Query 001230
Match_columns 1118
No_of_seqs 209 out of 1059
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 19:20:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02250 FCP1_euk FCP1-like p 100.0 4.3E-34 9.3E-39 281.7 14.2 155 915-1079 1-156 (156)
2 KOG1605 TFIIF-interacting CTD 100.0 2.3E-32 5.1E-37 290.2 5.4 165 914-1099 83-249 (262)
3 KOG0323 TFIIF-interacting CTD 100.0 3.5E-31 7.6E-36 306.2 14.6 223 882-1118 111-411 (635)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 7.3E-30 1.6E-34 251.4 10.7 157 920-1097 1-158 (162)
5 PF03031 NIF: NLI interacting 99.9 1.8E-27 3.9E-32 228.9 11.3 143 921-1088 1-145 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 5.4E-25 1.2E-29 225.7 12.4 148 916-1098 17-180 (195)
7 smart00577 CPDc catalytic doma 99.9 9.6E-22 2.1E-26 190.2 14.0 146 919-1082 1-147 (148)
8 KOG2832 TFIIF-interacting CTD 99.8 8.4E-21 1.8E-25 208.4 7.8 143 918-1098 187-330 (393)
9 COG5190 FCP1 TFIIF-interacting 99.8 1.3E-19 2.9E-24 201.8 10.4 169 908-1099 200-369 (390)
10 KOG0323 TFIIF-interacting CTD 99.1 6.4E-12 1.4E-16 147.5 -2.1 577 139-1004 23-634 (635)
11 COG5190 FCP1 TFIIF-interacting 99.1 1.3E-10 2.8E-15 130.8 6.4 155 913-1082 19-179 (390)
12 cd01427 HAD_like Haloacid deha 97.5 0.00015 3.2E-09 64.8 5.5 62 922-1012 1-63 (139)
13 TIGR01684 viral_ppase viral ph 96.9 0.0019 4.1E-08 72.0 7.4 75 914-1025 120-196 (301)
14 TIGR01681 HAD-SF-IIIC HAD-supe 96.9 0.00073 1.6E-08 65.1 3.7 80 974-1061 29-119 (128)
15 TIGR01685 MDP-1 magnesium-depe 96.9 0.0023 5E-08 65.9 6.9 135 921-1073 3-153 (174)
16 PHA03398 viral phosphatase sup 96.7 0.0029 6.2E-08 70.7 7.0 75 914-1025 122-198 (303)
17 TIGR01662 HAD-SF-IIIA HAD-supe 96.7 0.0063 1.4E-07 57.5 8.3 101 921-1059 1-112 (132)
18 TIGR01672 AphA HAD superfamily 96.4 0.0063 1.4E-07 65.5 6.7 133 914-1063 57-197 (237)
19 TIGR01261 hisB_Nterm histidino 96.4 0.014 3E-07 59.1 8.6 108 921-1060 2-130 (161)
20 COG4996 Predicted phosphatase 96.4 0.0075 1.6E-07 61.3 6.4 138 922-1087 2-156 (164)
21 PHA02530 pseT polynucleotide k 96.2 0.0041 8.8E-08 66.4 3.7 129 917-1072 155-291 (300)
22 TIGR01686 FkbH FkbH-like domai 96.1 0.0062 1.3E-07 66.9 5.0 107 919-1061 2-114 (320)
23 TIGR01549 HAD-SF-IA-v1 haloaci 96.0 0.0073 1.6E-07 57.9 4.2 82 972-1060 62-144 (154)
24 PRK08942 D,D-heptose 1,7-bisph 96.0 0.031 6.8E-07 56.1 8.8 107 920-1060 3-130 (181)
25 TIGR01656 Histidinol-ppas hist 95.9 0.021 4.5E-07 55.9 7.1 65 921-1012 1-81 (147)
26 TIGR01664 DNA-3'-Pase DNA 3'-p 95.8 0.055 1.2E-06 54.9 9.6 69 919-1012 12-93 (166)
27 PRK13478 phosphonoacetaldehyde 95.7 0.023 5E-07 60.3 6.9 87 973-1063 100-189 (267)
28 PF05152 DUF705: Protein of un 95.7 0.029 6.2E-07 62.7 7.8 75 914-1025 116-192 (297)
29 TIGR01533 lipo_e_P4 5'-nucleot 95.7 0.033 7.2E-07 61.2 8.1 89 917-1025 72-172 (266)
30 PF12689 Acid_PPase: Acid Phos 95.6 0.024 5.3E-07 58.6 6.2 121 920-1061 3-135 (169)
31 TIGR00213 GmhB_yaeD D,D-heptos 95.5 0.054 1.2E-06 54.4 8.4 28 973-1000 25-53 (176)
32 PRK13582 thrH phosphoserine ph 95.2 0.03 6.6E-07 56.2 5.2 49 972-1021 66-114 (205)
33 PRK11009 aphA acid phosphatase 94.6 0.056 1.2E-06 58.4 5.9 96 917-1025 60-170 (237)
34 PF13419 HAD_2: Haloacid dehal 94.3 0.062 1.3E-06 50.7 4.8 85 971-1060 74-160 (176)
35 TIGR02253 CTE7 HAD superfamily 94.1 0.06 1.3E-06 54.6 4.6 84 972-1060 92-177 (221)
36 PRK05446 imidazole glycerol-ph 93.8 0.26 5.6E-06 56.4 9.2 131 919-1081 1-155 (354)
37 TIGR01689 EcbF-BcbF capsule bi 93.1 0.23 5E-06 49.4 6.5 51 973-1024 23-86 (126)
38 PRK08238 hypothetical protein; 93.1 0.13 2.9E-06 60.6 5.6 92 973-1075 71-166 (479)
39 TIGR02254 YjjG/YfnB HAD superf 92.9 0.17 3.6E-06 51.1 5.4 84 972-1060 95-180 (224)
40 TIGR01509 HAD-SF-IA-v3 haloaci 92.9 0.17 3.6E-06 49.3 5.1 83 973-1061 84-168 (183)
41 TIGR01449 PGP_bact 2-phosphogl 92.6 0.2 4.4E-06 50.4 5.5 87 972-1063 83-171 (213)
42 TIGR01454 AHBA_synth_RP 3-amin 92.1 0.27 5.9E-06 49.8 5.8 87 972-1063 73-161 (205)
43 PRK13288 pyrophosphatase PpaX; 92.1 0.33 7.1E-06 49.6 6.3 87 972-1063 80-168 (214)
44 PRK11133 serB phosphoserine ph 92.0 0.24 5.3E-06 55.6 5.7 88 973-1061 180-275 (322)
45 TIGR01428 HAD_type_II 2-haloal 91.9 0.23 4.9E-06 50.0 4.9 83 973-1060 91-175 (198)
46 PRK13222 phosphoglycolate phos 91.9 0.33 7.1E-06 49.3 6.0 87 972-1063 91-179 (226)
47 PLN02770 haloacid dehalogenase 91.1 0.3 6.6E-06 51.7 5.1 87 972-1063 106-194 (248)
48 COG0546 Gph Predicted phosphat 91.0 0.46 1E-05 49.5 6.2 81 973-1061 88-173 (220)
49 TIGR01663 PNK-3'Pase polynucle 90.9 0.55 1.2E-05 56.4 7.4 113 917-1060 165-294 (526)
50 TIGR01993 Pyr-5-nucltdase pyri 90.7 0.19 4.2E-06 50.0 2.9 83 973-1061 83-169 (184)
51 PF08645 PNK3P: Polynucleotide 90.5 0.46 9.9E-06 48.3 5.5 53 921-998 1-54 (159)
52 PRK09449 dUMP phosphatase; Pro 90.3 0.4 8.7E-06 49.0 5.0 83 973-1060 94-178 (224)
53 PLN03243 haloacid dehalogenase 90.2 0.37 8E-06 52.3 4.7 87 972-1063 107-195 (260)
54 TIGR01668 YqeG_hyp_ppase HAD s 89.9 0.73 1.6E-05 46.6 6.3 93 918-1060 23-118 (170)
55 TIGR01491 HAD-SF-IB-PSPlk HAD- 89.7 0.59 1.3E-05 46.5 5.4 50 973-1023 79-129 (201)
56 TIGR01422 phosphonatase phosph 89.6 0.56 1.2E-05 49.3 5.4 87 973-1063 98-187 (253)
57 TIGR01675 plant-AP plant acid 89.1 1.1 2.3E-05 48.9 7.2 129 877-1025 34-172 (229)
58 TIGR01489 DKMTPPase-SF 2,3-dik 89.0 1 2.2E-05 44.2 6.4 49 973-1023 71-120 (188)
59 TIGR00338 serB phosphoserine p 88.7 0.71 1.5E-05 47.1 5.3 48 973-1021 84-132 (219)
60 PRK10563 6-phosphogluconate ph 88.6 0.36 7.8E-06 49.4 3.1 87 972-1064 86-173 (221)
61 PRK06769 hypothetical protein; 88.6 0.81 1.8E-05 46.4 5.5 28 973-1000 27-55 (173)
62 PF06941 NT5C: 5' nucleotidase 88.6 0.26 5.7E-06 50.3 2.1 77 973-1070 72-155 (191)
63 PRK10826 2-deoxyglucose-6-phos 88.3 0.72 1.6E-05 47.5 5.0 87 973-1064 91-179 (222)
64 PRK13226 phosphoglycolate phos 87.4 1.2 2.6E-05 46.6 6.1 87 972-1063 93-181 (229)
65 COG1011 Predicted hydrolase (H 87.4 0.94 2E-05 46.0 5.2 86 973-1063 98-184 (229)
66 PRK13223 phosphoglycolate phos 87.1 1.1 2.3E-05 48.7 5.6 85 973-1062 100-186 (272)
67 TIGR01670 YrbI-phosphatas 3-de 86.6 1.8 3.8E-05 43.3 6.5 121 972-1116 28-150 (154)
68 PRK11587 putative phosphatase; 86.6 1.3 2.8E-05 45.8 5.7 86 972-1063 81-168 (218)
69 TIGR01488 HAD-SF-IB Haloacid D 86.5 1.3 2.7E-05 43.4 5.4 49 973-1022 72-121 (177)
70 PRK00192 mannosyl-3-phosphogly 86.4 1.4 3E-05 47.3 6.1 57 920-1013 4-61 (273)
71 PRK14988 GMP/IMP nucleotidase; 86.3 0.75 1.6E-05 48.3 3.9 94 973-1071 92-187 (224)
72 TIGR03333 salvage_mtnX 2-hydro 86.0 1.4 3.1E-05 45.6 5.7 50 972-1021 68-118 (214)
73 TIGR01459 HAD-SF-IIA-hyp4 HAD- 85.9 1.6 3.5E-05 46.1 6.2 17 919-935 7-23 (242)
74 TIGR02009 PGMB-YQAB-SF beta-ph 85.8 0.78 1.7E-05 45.1 3.5 82 973-1061 87-170 (185)
75 PLN02575 haloacid dehalogenase 85.7 1 2.2E-05 52.2 5.0 84 973-1061 215-300 (381)
76 COG2503 Predicted secreted aci 85.7 1.2 2.7E-05 49.5 5.3 79 908-1002 67-151 (274)
77 PF08282 Hydrolase_3: haloacid 85.6 1.4 3.1E-05 44.1 5.4 13 923-935 1-13 (254)
78 PRK10725 fructose-1-P/6-phosph 85.5 0.95 2.1E-05 44.9 4.0 86 973-1064 87-173 (188)
79 PF13344 Hydrolase_6: Haloacid 84.7 1.8 3.9E-05 40.9 5.2 30 977-1006 17-51 (101)
80 TIGR02252 DREG-2 REG-2-like, H 84.4 1.8 4E-05 43.6 5.5 82 973-1060 104-187 (203)
81 TIGR01548 HAD-SF-IA-hyp1 haloa 84.2 1.8 3.8E-05 44.0 5.3 81 974-1060 106-188 (197)
82 COG0561 Cof Predicted hydrolas 84.1 2.3 4.9E-05 45.0 6.3 18 919-936 2-19 (264)
83 TIGR01456 CECR5 HAD-superfamil 82.3 2.3 4.9E-05 47.4 5.7 16 921-936 1-16 (321)
84 KOG3109 Haloacid dehalogenase- 82.1 1.8 3.8E-05 47.7 4.6 84 973-1063 99-191 (244)
85 TIGR02461 osmo_MPG_phos mannos 81.5 3.4 7.4E-05 43.9 6.4 33 979-1011 20-53 (225)
86 TIGR02463 MPGP_rel mannosyl-3- 81.3 2.4 5.2E-05 43.6 5.1 34 979-1012 21-55 (221)
87 PRK09456 ?-D-glucose-1-phospha 81.0 1.3 2.9E-05 45.0 3.1 89 971-1063 81-171 (199)
88 TIGR01487 SPP-like sucrose-pho 80.6 3.5 7.6E-05 42.4 6.0 14 921-934 2-15 (215)
89 PLN02940 riboflavin kinase 80.4 1.6 3.4E-05 50.0 3.8 84 973-1061 92-178 (382)
90 TIGR03351 PhnX-like phosphonat 79.9 2.8 6.2E-05 42.8 5.0 84 973-1060 86-173 (220)
91 COG0637 Predicted phosphatase/ 79.8 1.5 3.3E-05 46.2 3.1 86 973-1063 85-172 (221)
92 TIGR01544 HAD-SF-IE haloacid d 79.7 3.2 7E-05 46.5 5.7 140 972-1117 119-277 (277)
93 PLN02779 haloacid dehalogenase 79.4 3.1 6.7E-05 45.7 5.4 88 973-1064 143-233 (286)
94 PRK03669 mannosyl-3-phosphogly 79.0 4.9 0.00011 43.2 6.7 18 918-935 5-22 (271)
95 TIGR00099 Cof-subfamily Cof su 78.7 4 8.7E-05 43.0 5.8 13 923-935 2-14 (256)
96 TIGR02137 HSK-PSP phosphoserin 78.4 3.4 7.4E-05 43.5 5.2 50 973-1023 67-116 (203)
97 PRK06698 bifunctional 5'-methy 78.1 3.3 7.2E-05 48.1 5.4 82 973-1061 329-411 (459)
98 TIGR01484 HAD-SF-IIB HAD-super 77.6 3.8 8.1E-05 41.6 5.1 34 977-1010 20-54 (204)
99 TIGR02247 HAD-1A3-hyp Epoxide 77.5 1.6 3.5E-05 44.4 2.4 87 972-1063 92-182 (211)
100 PRK10530 pyridoxal phosphate ( 77.4 7.4 0.00016 41.0 7.3 23 920-944 3-25 (272)
101 PRK09552 mtnX 2-hydroxy-3-keto 77.1 3.2 6.9E-05 43.2 4.5 38 973-1010 73-111 (219)
102 PRK10513 sugar phosphate phosp 76.9 5.4 0.00012 42.2 6.2 16 920-935 3-18 (270)
103 PRK13225 phosphoglycolate phos 76.5 3.7 8.1E-05 45.1 5.0 81 973-1061 141-223 (273)
104 COG2179 Predicted hydrolase of 76.3 4.7 0.0001 42.9 5.4 114 913-1076 21-140 (175)
105 PHA02597 30.2 hypothetical pro 75.8 2.6 5.7E-05 42.6 3.4 85 972-1064 72-159 (197)
106 TIGR01691 enolase-ppase 2,3-di 75.7 3.8 8.2E-05 44.0 4.7 86 972-1063 93-182 (220)
107 TIGR01990 bPGM beta-phosphoglu 75.4 3.2 6.9E-05 40.9 3.8 82 973-1061 86-169 (185)
108 PF03767 Acid_phosphat_B: HAD 75.3 5.7 0.00012 42.8 5.9 78 917-1014 69-156 (229)
109 TIGR01486 HAD-SF-IIB-MPGP mann 75.0 5.9 0.00013 42.1 5.9 33 979-1011 21-54 (256)
110 PRK01158 phosphoglycolate phos 74.0 8.2 0.00018 39.7 6.4 15 921-935 4-18 (230)
111 PF11019 DUF2608: Protein of u 73.8 4.9 0.00011 44.1 5.0 164 919-1083 19-215 (252)
112 smart00775 LNS2 LNS2 domain. T 73.5 6.6 0.00014 39.9 5.6 30 975-1004 28-58 (157)
113 TIGR01680 Veg_Stor_Prot vegeta 73.0 12 0.00026 42.3 7.8 50 976-1025 147-197 (275)
114 TIGR01493 HAD-SF-IA-v2 Haloaci 72.0 1.3 2.8E-05 43.6 0.2 77 973-1060 89-166 (175)
115 TIGR01482 SPP-subfamily Sucros 70.9 8.6 0.00019 39.3 5.7 13 923-935 1-13 (225)
116 PRK15126 thiamin pyrimidine py 70.7 9.5 0.00021 40.7 6.2 15 921-935 3-17 (272)
117 PLN02954 phosphoserine phospha 70.2 9 0.00019 39.4 5.7 49 973-1021 83-133 (224)
118 PRK10444 UMP phosphatase; Prov 69.5 8.3 0.00018 41.9 5.5 14 922-935 3-16 (248)
119 TIGR02244 HAD-IG-Ncltidse HAD 68.9 8.4 0.00018 44.4 5.7 42 970-1011 180-223 (343)
120 PRK09484 3-deoxy-D-manno-octul 68.0 17 0.00037 37.4 7.1 61 988-1062 63-124 (183)
121 PRK10187 trehalose-6-phosphate 67.3 8 0.00017 42.2 4.9 17 919-935 13-29 (266)
122 PRK10976 putative hydrolase; P 67.1 13 0.00028 39.5 6.2 22 921-944 3-24 (266)
123 PTZ00174 phosphomannomutase; P 66.5 7 0.00015 41.7 4.2 28 919-948 4-31 (247)
124 PLN02645 phosphoglycolate phos 66.2 10 0.00023 42.1 5.6 17 919-935 27-43 (311)
125 PLN02919 haloacid dehalogenase 65.0 9.1 0.0002 49.7 5.5 85 975-1063 162-248 (1057)
126 TIGR01458 HAD-SF-IIA-hyp3 HAD- 64.1 10 0.00022 41.1 4.9 15 921-935 2-16 (257)
127 PLN02811 hydrolase 63.1 8.3 0.00018 40.1 3.9 86 973-1063 77-170 (220)
128 TIGR01490 HAD-SF-IB-hyp1 HAD-s 61.5 13 0.00028 37.5 4.8 49 973-1022 86-135 (202)
129 PLN03017 trehalose-phosphatase 59.3 16 0.00034 42.8 5.6 63 914-1008 105-167 (366)
130 PF09419 PGP_phosphatase: Mito 59.2 16 0.00035 38.4 5.2 126 874-1069 14-157 (168)
131 TIGR00685 T6PP trehalose-phosp 58.2 6.9 0.00015 41.7 2.4 16 919-934 2-17 (244)
132 TIGR01485 SPP_plant-cyano sucr 58.1 15 0.00033 39.0 4.8 15 920-934 1-15 (249)
133 TIGR01452 PGP_euk phosphoglyco 57.9 18 0.00039 39.4 5.5 15 921-935 3-17 (279)
134 PLN03243 haloacid dehalogenase 56.1 9.2 0.0002 41.7 2.9 23 912-935 17-39 (260)
135 TIGR01457 HAD-SF-IIA-hyp2 HAD- 54.4 22 0.00049 38.2 5.5 15 922-936 3-17 (249)
136 PLN02423 phosphomannomutase 53.5 25 0.00055 37.9 5.7 17 919-935 6-22 (245)
137 COG4359 Uncharacterized conser 53.0 26 0.00057 38.3 5.6 39 973-1011 72-111 (220)
138 PRK12702 mannosyl-3-phosphogly 52.8 29 0.00062 39.9 6.1 15 921-935 2-16 (302)
139 PLN02151 trehalose-phosphatase 52.6 25 0.00055 40.9 5.8 63 914-1008 92-154 (354)
140 COG3882 FkbH Predicted enzyme 52.4 7.7 0.00017 46.9 1.7 130 914-1077 216-355 (574)
141 PLN02887 hydrolase family prot 50.8 28 0.00061 42.8 6.1 21 915-935 303-323 (580)
142 TIGR01548 HAD-SF-IA-hyp1 haloa 50.4 8.7 0.00019 39.1 1.5 15 922-936 2-16 (197)
143 COG0241 HisB Histidinol phosph 50.2 54 0.0012 35.2 7.3 108 920-1060 5-132 (181)
144 PRK10725 fructose-1-P/6-phosph 50.2 9.1 0.0002 38.1 1.6 17 920-936 5-21 (188)
145 PRK11590 hypothetical protein; 50.1 9.2 0.0002 39.8 1.7 39 973-1011 94-134 (211)
146 PHA02597 30.2 hypothetical pro 49.6 9.6 0.00021 38.6 1.7 15 921-935 3-17 (197)
147 PRK14502 bifunctional mannosyl 49.4 31 0.00068 43.4 6.2 19 917-935 413-431 (694)
148 COG0647 NagD Predicted sugar p 49.4 25 0.00054 39.5 5.0 18 918-935 6-23 (269)
149 PRK11587 putative phosphatase; 48.4 9.4 0.0002 39.5 1.5 17 920-936 3-19 (218)
150 TIGR01460 HAD-SF-IIA Haloacid 48.0 22 0.00048 37.9 4.2 14 923-936 1-14 (236)
151 COG1877 OtsB Trehalose-6-phosp 47.6 47 0.001 37.4 6.7 64 913-1008 11-76 (266)
152 PLN02580 trehalose-phosphatase 47.5 26 0.00057 41.2 4.9 63 914-1008 113-175 (384)
153 COG0560 SerB Phosphoserine pho 47.2 36 0.00078 36.4 5.6 49 972-1021 75-124 (212)
154 PRK13288 pyrophosphatase PpaX; 45.7 11 0.00025 38.5 1.6 17 920-936 3-19 (214)
155 TIGR02253 CTE7 HAD superfamily 45.6 11 0.00025 38.4 1.5 16 921-936 3-18 (221)
156 TIGR03351 PhnX-like phosphonat 45.1 13 0.00028 38.2 1.8 16 921-936 2-17 (220)
157 TIGR01993 Pyr-5-nucltdase pyri 44.7 11 0.00024 37.7 1.3 14 922-935 2-15 (184)
158 PRK13223 phosphoglycolate phos 41.3 13 0.00029 40.4 1.4 16 920-935 13-28 (272)
159 TIGR02252 DREG-2 REG-2-like, H 41.2 16 0.00034 37.0 1.8 14 922-935 2-15 (203)
160 PF13419 HAD_2: Haloacid dehal 40.8 14 0.00031 35.0 1.3 14 923-936 1-14 (176)
161 TIGR02009 PGMB-YQAB-SF beta-ph 40.7 14 0.00029 36.6 1.2 16 921-936 2-17 (185)
162 PRK13226 phosphoglycolate phos 40.3 14 0.0003 38.9 1.2 15 921-935 13-27 (229)
163 PF00702 Hydrolase: haloacid d 39.6 63 0.0014 32.3 5.7 77 971-1060 124-205 (215)
164 KOG3120 Predicted haloacid deh 38.8 50 0.0011 37.1 5.1 39 973-1011 83-123 (256)
165 PRK10748 flavin mononucleotide 38.2 28 0.00062 36.9 3.2 82 973-1064 112-196 (238)
166 TIGR01511 ATPase-IB1_Cu copper 38.1 60 0.0013 39.4 6.1 41 972-1012 403-444 (562)
167 PRK11590 hypothetical protein; 37.4 43 0.00093 35.0 4.3 18 918-935 4-21 (211)
168 TIGR01509 HAD-SF-IA-v3 haloaci 37.4 16 0.00035 35.6 1.2 14 922-935 1-14 (183)
169 PLN02770 haloacid dehalogenase 37.3 16 0.00035 39.0 1.2 16 921-936 23-38 (248)
170 TIGR00338 serB phosphoserine p 37.2 19 0.0004 37.0 1.6 18 918-935 12-29 (219)
171 TIGR01990 bPGM beta-phosphoglu 37.2 15 0.00033 36.2 0.9 14 923-936 2-15 (185)
172 TIGR01422 phosphonatase phosph 37.1 21 0.00045 37.8 2.0 15 921-935 3-17 (253)
173 PTZ00445 p36-lilke protein; Pr 36.3 58 0.0013 36.1 5.1 75 904-1002 29-104 (219)
174 PF12710 HAD: haloacid dehalog 35.8 39 0.00085 33.4 3.5 47 975-1021 86-138 (192)
175 TIGR01454 AHBA_synth_RP 3-amin 35.8 14 0.00031 37.6 0.5 14 923-936 1-14 (205)
176 TIGR02254 YjjG/YfnB HAD superf 35.7 19 0.0004 36.6 1.3 16 921-936 2-17 (224)
177 PRK10826 2-deoxyglucose-6-phos 35.6 20 0.00044 37.1 1.5 17 919-935 6-22 (222)
178 TIGR01428 HAD_type_II 2-haloal 35.3 19 0.00041 36.4 1.3 14 922-935 3-16 (198)
179 TIGR02247 HAD-1A3-hyp Epoxide 35.1 23 0.0005 36.2 1.9 15 921-935 3-17 (211)
180 TIGR01545 YfhB_g-proteo haloac 34.8 71 0.0015 33.9 5.4 37 973-1009 93-131 (210)
181 TIGR01491 HAD-SF-IB-PSPlk HAD- 34.7 22 0.00048 35.5 1.6 15 921-935 5-19 (201)
182 TIGR01449 PGP_bact 2-phosphogl 34.5 15 0.00033 37.1 0.5 13 923-935 1-13 (213)
183 TIGR01489 DKMTPPase-SF 2,3-dik 34.1 23 0.0005 34.9 1.6 16 920-935 1-16 (188)
184 PRK13225 phosphoglycolate phos 34.0 19 0.00042 39.7 1.1 16 920-935 62-77 (273)
185 PRK10748 flavin mononucleotide 33.7 20 0.00043 38.0 1.2 15 921-935 11-25 (238)
186 PRK13222 phosphoglycolate phos 33.3 21 0.00046 36.3 1.3 16 920-935 6-21 (226)
187 PRK09449 dUMP phosphatase; Pro 33.2 20 0.00044 36.9 1.1 14 921-934 4-17 (224)
188 PRK14501 putative bifunctional 31.7 59 0.0013 40.5 4.9 19 916-934 488-506 (726)
189 TIGR01493 HAD-SF-IA-v2 Haloaci 31.6 22 0.00048 35.1 1.0 13 923-935 2-14 (175)
190 PLN02382 probable sucrose-phos 30.3 27 0.00059 40.9 1.7 21 914-934 3-23 (413)
191 PLN02779 haloacid dehalogenase 30.1 30 0.00066 38.2 1.9 17 919-935 39-55 (286)
192 PRK14988 GMP/IMP nucleotidase; 30.0 28 0.0006 36.8 1.5 16 920-935 10-25 (224)
193 PF04147 Nop14: Nop14-like fam 29.3 27 0.00058 44.6 1.4 68 188-268 415-482 (840)
194 PF06888 Put_Phosphatase: Puta 27.8 90 0.002 34.5 4.9 40 973-1012 70-112 (234)
195 TIGR02726 phenyl_P_delta pheny 27.5 2.5E+02 0.0053 29.4 7.7 115 920-1075 7-123 (169)
196 COG4502 5'(3')-deoxyribonucleo 27.4 1.2E+02 0.0027 32.2 5.5 30 973-1002 67-96 (180)
197 PF13701 DDE_Tnp_1_4: Transpos 26.8 1.4E+02 0.0031 35.6 6.7 126 877-1015 102-242 (448)
198 PRK10563 6-phosphogluconate ph 26.5 34 0.00073 35.3 1.4 16 920-935 4-19 (221)
199 PLN02954 phosphoserine phospha 24.9 40 0.00086 34.7 1.5 19 918-936 10-28 (224)
200 PLN02575 haloacid dehalogenase 23.9 51 0.0011 38.8 2.3 20 916-935 127-146 (381)
201 cd02514 GT13_GLCNAC-TI GT13_GL 23.2 74 0.0016 36.9 3.4 106 971-1077 6-138 (334)
202 PRK06698 bifunctional 5'-methy 23.2 37 0.0008 39.8 1.0 16 921-936 242-257 (459)
203 TIGR01525 ATPase-IB_hvy heavy 22.3 1.1E+02 0.0024 36.9 4.8 75 972-1061 382-458 (556)
204 TIGR02137 HSK-PSP phosphoserin 21.6 44 0.00096 35.4 1.2 12 923-934 4-15 (203)
205 COG1011 Predicted hydrolase (H 21.6 51 0.0011 33.6 1.5 17 919-935 3-19 (229)
206 PF05116 S6PP: Sucrose-6F-phos 21.3 52 0.0011 35.7 1.6 14 919-932 1-14 (247)
207 TIGR02471 sucr_syn_bact_C sucr 21.1 42 0.00092 35.2 0.9 13 923-935 2-14 (236)
208 PF04546 Sigma70_ner: Sigma-70 21.0 36 0.00078 36.3 0.3 58 175-232 83-142 (211)
209 PF08235 LNS2: LNS2 (Lipin/Ned 20.9 1.6E+02 0.0034 31.2 4.9 62 923-1010 2-64 (157)
210 COG0637 Predicted phosphatase/ 20.8 45 0.00098 35.4 1.0 27 988-1014 76-102 (221)
211 PRK09552 mtnX 2-hydroxy-3-keto 20.2 53 0.0011 34.3 1.4 17 920-936 3-19 (219)
No 1
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=4.3e-34 Score=281.72 Aligned_cols=155 Identities=43% Similarity=0.704 Sum_probs=127.2
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEEE
Q 001230 915 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 994 (1118)
Q Consensus 915 LLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIVI 994 (1118)
|+..+|++||||||||||||+....... .+.+...+......+..+.|.+....+|+++|||+.+||++|++.|+++|
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I 78 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSE--WEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHV 78 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccch--hhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEE
Confidence 4678999999999999999996432211 11111111011112334667776778999999999999999999999999
Q ss_pred eccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccCCCCeEEe
Q 001230 995 YTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVV 1073 (1118)
Q Consensus 995 FTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgIpI 1073 (1118)
||++.+.||++|++.|||.+.+|++|+|+|++|. | .++|||++++|++ ++||||||++.+|..|++|+|+|
T Consensus 79 ~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~----~----~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i 150 (156)
T TIGR02250 79 YTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG----S----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI 150 (156)
T ss_pred EeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC----C----CccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence 9999999999999999999989989999998874 2 5899998899987 99999999999999999999999
Q ss_pred ccccCC
Q 001230 1074 ERYTYF 1079 (1118)
Q Consensus 1074 kpF~gF 1079 (1118)
+||.||
T Consensus 151 ~~~~~f 156 (156)
T TIGR02250 151 EPYNYF 156 (156)
T ss_pred CCcccC
Confidence 999997
No 2
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.97 E-value=2.3e-32 Score=290.23 Aligned_cols=165 Identities=28% Similarity=0.378 Sum_probs=136.0
Q ss_pred hhhcCCCeEEEEeCCCceeeccc-CCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceE
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAK-FHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 992 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~-~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEI 992 (1118)
+....+|+||||||||||||++. ++...+ .+... ...+......+||.+|||+++||.+++++||+
T Consensus 83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~~-~d~~~------------~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~ 149 (262)
T KOG1605|consen 83 RLATVGRKTLVLDLDETLVHSSLNLKPIVN-ADFTV------------PVEIDGHIHQVYVRKRPHVDEFLSRVSKWYEL 149 (262)
T ss_pred ccccCCCceEEEeCCCcccccccccCCCCC-cceee------------eeeeCCcceEEEEEcCCCHHHHHHHhHHHHHH
Confidence 44578999999999999999994 221111 11111 01111123578999999999999999999999
Q ss_pred EEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccCCCCeE
Q 001230 993 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLI 1071 (1118)
Q Consensus 993 VIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgI 1071 (1118)
+||||+...||.+|+++|||.+++|.+|+| |++| ...+| .|+|||. ++|++ ++||||||+|.+|..||+|+|
T Consensus 150 v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C-~~~~g----~yvKdls-~~~~dL~~viIiDNsP~sy~~~p~NgI 222 (262)
T KOG1605|consen 150 VLFTASLEVYADPLLDILDPDRKIISHRLY-RDSC-TLKDG----NYVKDLS-VLGRDLSKVIIVDNSPQSYRLQPENGI 222 (262)
T ss_pred HHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccce-EeECC----cEEEEcc-eeccCcccEEEEcCChHHhccCccCCC
Confidence 999999999999999999998889999988 5655 46777 6999998 68888 899999999999999999999
Q ss_pred EeccccCCCCchhhhCCCCCCccccccc
Q 001230 1072 VVERYTYFPCSRRQFGLLGPSLLEIDHD 1099 (1118)
Q Consensus 1072 pIkpF~gFp~DrrllgL~~pSL~El~~D 1099 (1118)
+|++|..++.|.+|++| .|+|..+...
T Consensus 223 pI~sw~~d~~D~eLL~L-lpfLe~L~~~ 249 (262)
T KOG1605|consen 223 PIKSWFDDPTDTELLKL-LPFLEALAFV 249 (262)
T ss_pred cccccccCCChHHHHHH-HHHHHHhccc
Confidence 99999999999999998 6888887754
No 3
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.97 E-value=3.5e-31 Score=306.21 Aligned_cols=223 Identities=38% Similarity=0.548 Sum_probs=177.2
Q ss_pred cccCCcccccCCchhHHHHhhHHHHHhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcc
Q 001230 882 AWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHR 961 (1118)
Q Consensus 882 ~~~df~~L~~Gy~~~qra~i~ke~tkRL~eq~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v 961 (1118)
+...|.++..+.+..+.... ..+++..+..++..++|+||+|||+||+|+....++......+.. +......+.
T Consensus 111 ~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~---~~~~~~sn~ 184 (635)
T KOG0323|consen 111 QGRSFDYLVKGLQLSNEMVA---FTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETEKYLKE---EAESVESNK 184 (635)
T ss_pred hccchhcccchhhhhhhhhh---hhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhhhhccc---ccccccccc
Confidence 35566778887777666554 578888888889999999999999999999964433222111111 111101222
Q ss_pred eeeeec----cceEEEEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCC
Q 001230 962 HLFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERV 1037 (1118)
Q Consensus 962 ~lF~l~----~~~vyVKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~ 1037 (1118)
..|.++ ...||||+||++.+||++++++|||||||+|++.||..|+++|||.|.||++|||+|++.. .
T Consensus 185 dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~--------~ 256 (635)
T KOG0323|consen 185 DLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESP--------F 256 (635)
T ss_pred cceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCC--------c
Confidence 334443 2578999999999999999999999999999999999999999999999999999998732 1
Q ss_pred ccccccccccCCC-CeEEEEeCCCCccccCCCCeEEeccccCCCCchhhhC-----------------------------
Q 001230 1038 PKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFG----------------------------- 1087 (1118)
Q Consensus 1038 ~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgIpIkpF~gFp~Drrllg----------------------------- 1087 (1118)
...+||..++.+. ++||||||+..||.+++.|+|.|.+|.||....+..-
T Consensus 257 ~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~ 336 (635)
T KOG0323|consen 257 FKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSR 336 (635)
T ss_pred ccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCcccccc
Confidence 3567887666665 8999999999999999889999999999998764442
Q ss_pred --------------------------------------------CCCCCccccccccCCCcchHHHHHHHHhhcC
Q 001230 1088 --------------------------------------------LLGPSLLEIDHDERSEDGTLASSLGVRQQLH 1118 (1118)
Q Consensus 1088 --------------------------------------------L~~pSL~El~~DE~~~DGtLAn~L~vL~~IH 1118 (1118)
.-..++.|..+|+.+.|+.|++++++|+.||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH 411 (635)
T KOG0323|consen 337 ISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVH 411 (635)
T ss_pred cccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccc
Confidence 3467889999999999999999999999999
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.96 E-value=7.3e-30 Score=251.40 Aligned_cols=157 Identities=29% Similarity=0.342 Sum_probs=122.9
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEEEeccCc
Q 001230 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGN 999 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIVIFTAGt 999 (1118)
|+|||||||||||||...+ ... ..+ ......++.....+||++|||+.+||++|+++|||+|||++.
T Consensus 1 k~~lvlDLDeTLi~~~~~~----~~~-------~~~--~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~ 67 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKM----PKV-------DAD--FKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASL 67 (162)
T ss_pred CcEEEEcCCCCcCCCCCCC----CCC-------CCc--eEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCc
Confidence 6899999999999997522 100 000 000001111245799999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccCCCCeEEeccccC
Q 001230 1000 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTY 1078 (1118)
Q Consensus 1000 KeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgIpIkpF~g 1078 (1118)
+.||++|++.|||.+.+|.+++| |++|.. ..| .+.|||+ .+|++ +++|||||++..|..++.|+|+|.+|.|
T Consensus 68 ~~yA~~il~~ldp~~~~f~~~l~-r~~~~~-~~~----~~~K~L~-~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 68 EEYADPVLDILDRGGKVISRRLY-RESCVF-TNG----KYVKDLS-LVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred HHHHHHHHHHHCcCCCEEeEEEE-ccccEE-eCC----CEEeEch-hcCCChhhEEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999889998766 676642 333 4899999 58887 9999999999999999999999999999
Q ss_pred CCCchhhhCCCCCCccccc
Q 001230 1079 FPCSRRQFGLLGPSLLEID 1097 (1118)
Q Consensus 1079 Fp~DrrllgL~~pSL~El~ 1097 (1118)
..+|++++.| .+.|.++.
T Consensus 141 ~~~D~~L~~l-~~~L~~l~ 158 (162)
T TIGR02251 141 DPNDTELLNL-IPFLEGLR 158 (162)
T ss_pred CCCHHHHHHH-HHHHHHHh
Confidence 9888887765 34444443
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.94 E-value=1.8e-27 Score=228.89 Aligned_cols=143 Identities=38% Similarity=0.509 Sum_probs=101.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEEEeccCcH
Q 001230 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNK 1000 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIVIFTAGtK 1000 (1118)
++|||||||||||+...... + .+ .........++|++|||+++||++|+++|||+|||++++
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~-----------~~------~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~ 62 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-P-----------YD------FKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASE 62 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T------------S------EEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-H
T ss_pred CEEEEeCCCcEEEEeecCCC-C-----------cc------cceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehh
Confidence 68999999999999853211 0 00 000002346899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccCCCCeEEeccccCC
Q 001230 1001 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF 1079 (1118)
Q Consensus 1001 eYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgIpIkpF~gF 1079 (1118)
.||.+|++.|||++.+|.+++ +|++|. ...| .++|||++ +|++ ++||||||++.+|..+++|+|+|++|.+.
T Consensus 63 ~ya~~v~~~ldp~~~~~~~~~-~r~~~~-~~~~----~~~KdL~~-l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~ 135 (159)
T PF03031_consen 63 EYAEPVLDALDPNGKLFSRRL-YRDDCT-FDKG----SYIKDLSK-LGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGD 135 (159)
T ss_dssp HHHHHHHHHHTTTTSSEEEEE-EGGGSE-EETT----EEE--GGG-SSS-GGGEEEEES-GGGGTTSGGGEEE----SSC
T ss_pred hhhhHHHHhhhhhcccccccc-cccccc-cccc----ccccchHH-HhhccccEEEEeCCHHHeeccCCceEEeccccCC
Confidence 999999999999888998765 467664 2222 46899994 5776 99999999999999999999999999988
Q ss_pred -CCchhhhCC
Q 001230 1080 -PCSRRQFGL 1088 (1118)
Q Consensus 1080 -p~DrrllgL 1088 (1118)
+.|+++..|
T Consensus 136 ~~~D~~L~~l 145 (159)
T PF03031_consen 136 TPNDRELLRL 145 (159)
T ss_dssp HTT--HHHHH
T ss_pred CcchhHHHHH
Confidence 677665553
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.92 E-value=5.4e-25 Score=225.70 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=112.3
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEEEe
Q 001230 916 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLY 995 (1118)
Q Consensus 916 Ls~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIVIF 995 (1118)
...+|++|||||||||||+.. +. ...|+.+||||++||++|+++|||+||
T Consensus 17 ~~~~kklLVLDLDeTLvh~~~-----~~-------------------------~~~~~~kRP~l~eFL~~~~~~feIvVw 66 (195)
T TIGR02245 17 PREGKKLLVLDIDYTLFDHRS-----PA-------------------------ETGEELMRPYLHEFLTSAYEDYDIVIW 66 (195)
T ss_pred CCCCCcEEEEeCCCceEcccc-----cC-------------------------CCceEEeCCCHHHHHHHHHhCCEEEEE
Confidence 357899999999999999742 10 024789999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhcCCC-ceeeeeEEecCCCCCC-----CCCCCCCcccccccccc---CC--C-CeEEEEeCCCCcc
Q 001230 996 TMGNKLYATEMAKVLDPKG-VLFAGRVISRGDDGDP-----FDGDERVPKSKDLEGVL---GM--E-SAVVIIDDSVRVW 1063 (1118)
Q Consensus 996 TAGtKeYAd~VLdiLDP~g-kLFs~RVySRDDC~~~-----~dGnER~~yvKDLSrVL---Gr--d-srVVIVDDSp~VW 1063 (1118)
||+...||+.+++.|++.+ ..+..+++ ++.|+.+ ..| ..++|||+.+. |+ + +++|||||++.++
T Consensus 67 TAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g---~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~ 142 (195)
T TIGR02245 67 SATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRG---KFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNF 142 (195)
T ss_pred ecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccC---cEEEeecHHhhhhcccCCCcccEEEEeCCHHHH
Confidence 9999999999999997643 22333333 4655321 122 13589999653 32 4 7999999999999
Q ss_pred ccCCCCeEEeccccCC----CCchhhhCCCCCCcccccc
Q 001230 1064 PHNKLNLIVVERYTYF----PCSRRQFGLLGPSLLEIDH 1098 (1118)
Q Consensus 1064 ~~QpdNgIpIkpF~gF----p~DrrllgL~~pSL~El~~ 1098 (1118)
..||.|+|+|++|.+. +.|+++..| .+.|.++.+
T Consensus 143 ~~~P~N~i~I~~f~~~~~~~~~D~eL~~L-~~yL~~la~ 180 (195)
T TIGR02245 143 LMNPQNGLKIRPFKKAHANRGTDQELLKL-TQYLKTIAE 180 (195)
T ss_pred hcCCCCccccCCccccCCCCcccHHHHHH-HHHHHHHhc
Confidence 9999999999999864 466666665 466666654
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.87 E-value=9.6e-22 Score=190.15 Aligned_cols=146 Identities=38% Similarity=0.504 Sum_probs=114.4
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEEEeccC
Q 001230 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 998 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIVIFTAG 998 (1118)
+|++|||||||||||+...... ++.. ...+-...+......+++++|||+.+||++|.+.|+|+|||++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~ 69 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-----EWTN------RDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAG 69 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-----CCCc------cceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCC
Confidence 6899999999999999741110 1110 0001112222334578899999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccCCCCeEEecccc
Q 001230 999 NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYT 1077 (1118)
Q Consensus 999 tKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgIpIkpF~ 1077 (1118)
.+.||+.+++.|++.+.+|. +++++++|.. .++ .|.|+|+ .+|+. +.+|+|||++..|..++.|+|.|++|.
T Consensus 70 ~~~~~~~il~~l~~~~~~f~-~i~~~~d~~~-~KP----~~~k~l~-~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~ 142 (148)
T smart00577 70 LRMYADPVLDLLDPKKYFGY-RRLFRDECVF-VKG----KYVKDLS-LLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWF 142 (148)
T ss_pred cHHHHHHHHHHhCcCCCEee-eEEECccccc-cCC----eEeecHH-HcCCChhcEEEEECCHHHhhcCccCEEEecCcC
Confidence 99999999999999764554 5888887642 222 3889998 57876 899999999999999999999999999
Q ss_pred CCCCc
Q 001230 1078 YFPCS 1082 (1118)
Q Consensus 1078 gFp~D 1082 (1118)
++.+|
T Consensus 143 ~~~~d 147 (148)
T smart00577 143 GDPDD 147 (148)
T ss_pred CCCCC
Confidence 99987
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.82 E-value=8.4e-21 Score=208.37 Aligned_cols=143 Identities=24% Similarity=0.371 Sum_probs=126.6
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEEEecc
Q 001230 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTM 997 (1118)
Q Consensus 918 ~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIVIFTA 997 (1118)
++++||||||.++|||..+- +. .++.+++|||++.||..|+++|||||||.
T Consensus 187 Qp~yTLVleledvLVhpdws--------------------------~~---tGwRf~kRPgvD~FL~~~a~~yEIVi~ss 237 (393)
T KOG2832|consen 187 QPPYTLVLELEDVLVHPDWS--------------------------YK---TGWRFKKRPGVDYFLGHLAKYYEIVVYSS 237 (393)
T ss_pred CCCceEEEEeeeeEeccchh--------------------------hh---cCceeccCchHHHHHHhhcccceEEEEec
Confidence 47999999999999999741 00 24789999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccCCCCeEEeccc
Q 001230 998 GNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERY 1076 (1118)
Q Consensus 998 GtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgIpIkpF 1076 (1118)
....||.+|++.|||+| ++++|+| |+ ||.+.+| +++|||+. |.|+ ++||+||-++..+..||+|.|.+++|
T Consensus 238 e~gmt~~pl~d~lDP~g-~IsYkLf-r~-~t~y~~G----~HvKdls~-LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W 309 (393)
T KOG2832|consen 238 EQGMTVFPLLDALDPKG-YISYKLF-RG-ATKYEEG----HHVKDLSK-LNRDLQKVIVVDFDANSYKLQPENMLPLEPW 309 (393)
T ss_pred CCccchhhhHhhcCCcc-eEEEEEe-cC-cccccCc----cchhhhhh-hccccceeEEEEccccccccCcccccccCcC
Confidence 99999999999999997 7889998 45 6677887 79999994 7777 99999999999999999999999999
Q ss_pred cCCCCchhhhCCCCCCcccccc
Q 001230 1077 TYFPCSRRQFGLLGPSLLEIDH 1098 (1118)
Q Consensus 1077 ~gFp~DrrllgL~~pSL~El~~ 1098 (1118)
.|+.+|+.+++| .++|..+..
T Consensus 310 ~Gn~dDt~L~dL-~~FL~~ia~ 330 (393)
T KOG2832|consen 310 SGNDDDTSLFDL-LAFLEYIAQ 330 (393)
T ss_pred CCCcccchhhhH-HHHHHHHHH
Confidence 999999999998 567766654
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.80 E-value=1.3e-19 Score=201.81 Aligned_cols=169 Identities=26% Similarity=0.318 Sum_probs=134.6
Q ss_pred hHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh
Q 001230 908 RLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 987 (1118)
Q Consensus 908 RL~eq~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS 987 (1118)
.+..+..--...+.+|+||||+||+|+.... ....+++... ........+||.+||+|++||..++
T Consensus 200 ~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~---~~~~df~~~~-----------e~~~~~~~~~v~kRp~l~~fl~~ls 265 (390)
T COG5190 200 TLEPPVSKSTSPKKTLVLDLDETLVHSSFRY---ITLLDFLVKV-----------EISLLQHLVYVSKRPELDYFLGKLS 265 (390)
T ss_pred cccchhhcCCCCccccccCCCccceeecccc---ccccchhhcc-----------ccccceeEEEEcCChHHHHHHhhhh
Confidence 3334444557899999999999999998531 1111121111 1111125689999999999999999
Q ss_pred hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccC
Q 001230 988 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHN 1066 (1118)
Q Consensus 988 KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~Q 1066 (1118)
++|++++||++.+.||++|+++||+.+ +|.+|+|++ .|+ ..+| .|+|||. .+++. .+++|||++|..|..+
T Consensus 266 ~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lfr~-sc~-~~~G----~~ikDis-~i~r~l~~viiId~~p~SY~~~ 337 (390)
T COG5190 266 KIHELVYFTASVKRYADPVLDILDSDK-VFSHRLFRE-SCV-SYLG----VYIKDIS-KIGRSLDKVIIIDNSPASYEFH 337 (390)
T ss_pred hhEEEEEEecchhhhcchHHHhccccc-eeehhhhcc-cce-eccC----chhhhHH-hhccCCCceEEeeCChhhhhhC
Confidence 999999999999999999999999998 899998854 454 5666 4999999 56776 9999999999999999
Q ss_pred CCCeEEeccccCCCCchhhhCCCCCCccccccc
Q 001230 1067 KLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHD 1099 (1118)
Q Consensus 1067 pdNgIpIkpF~gFp~DrrllgL~~pSL~El~~D 1099 (1118)
|.|+|+|.+|.+++++.+++.+ .+++..+.+.
T Consensus 338 p~~~i~i~~W~~d~~d~el~~l-l~~le~L~~~ 369 (390)
T COG5190 338 PENAIPIEKWISDEHDDELLNL-LPFLEDLPDR 369 (390)
T ss_pred ccceeccCcccccccchhhhhh-cccccccccc
Confidence 9999999999999999999987 5666666653
No 10
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.11 E-value=6.4e-12 Score=147.53 Aligned_cols=577 Identities=22% Similarity=0.196 Sum_probs=334.6
Q ss_pred cccccccccccccccccccc----------ccccchhhh------Hhhhhhh-hHHHHHHHHhhhh--cccchhHHhhhh
Q 001230 139 IEKEEGELEEGEIELDLESE----------SNEKVSEQV------KEEMKLI-NVESIREALESVL--RGDISFEGVCSK 199 (1118)
Q Consensus 139 ~ekeegeleegeidld~~~e----------~~~~~~~~~------~e~~~~~-~~~~ir~~le~v~--~~~~sf~~~c~~ 199 (1118)
..++.+.+.+|.++.-.++. +.+...... +.+++.. .|..+++++.+.+ +...-|.|.|..
T Consensus 23 ~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~v~~~~~~~~~~~~C~H~~v~~GlC~~ 102 (635)
T KOG0323|consen 23 DLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLGRDLEKKVALISGVSSSTSCCEHFTVFGGLCAS 102 (635)
T ss_pred chhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccccchhhhhccccccccccCCccceeecccHHHH
Confidence 37889999999987743311 111111111 1135555 6667777777744 778899999999
Q ss_pred HHHHHHHHHHhhcCCCCcchhHHHHHHHhhhheeeeeeeccChhhhhhhHHHHHHHHHHhhcCCCCCCChhHHHHHHHHh
Q 001230 200 LEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAML 279 (1118)
Q Consensus 200 l~~~l~~l~~~~~~~~~~~~d~lv~~~f~~~~~~~~v~~s~~~~~ke~nk~~~~rll~~~~~~~~~~~~~~q~~e~~~~~ 279 (1118)
.-..|+++..... .+-.....|++..+..++++++.||+|++.. |.++..+...++...+...|..+.
T Consensus 103 Cg~~l~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~Dld~tllh~~~~~~l~e~~ 170 (635)
T KOG0323|consen 103 CGKDLESLQGRSF-DYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVLDLDHTLLHTILKSDLSETE 170 (635)
T ss_pred HHHHHHHhhccch-hcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeehhhhhHHHHhhccchhhhhh
Confidence 9888887655544 4447889999999999999999999998766 222222222222222222332222
Q ss_pred hhhhhccccchhhhhhhccccCCCCCccccccccccccccCCCCCccccccCCCccCCCCCCCCccccccccccCCCCCc
Q 001230 280 SSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKV 359 (1118)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~r~~~~plldlh~d 359 (1118)
..+.... . .++...+.+.-++. .+++.-..|-|--+.++|..|+
T Consensus 171 ~~l~~~~----------------------~----------~~~sn~dl~~~~~~---~~~~~~~vKlRP~~~efL~~~s- 214 (635)
T KOG0323|consen 171 KYLKEEA----------------------E----------SVESNKDLFRFNPL---GHDTEYLVKLRPFVHEFLKEAN- 214 (635)
T ss_pred hhccccc----------------------c----------cccccccceeeccc---CCCceEEEEeCccHHHHHHHHH-
Confidence 2221111 0 01223333333333 4456666788988999999888
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccccccccccccccccCcCCCccCCCchhhhHHHhHHHhhhcCcccccCCCCCCC
Q 001230 360 HDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSP 439 (1118)
Q Consensus 360 hd~dslpsptre~~~~~pv~~~~~~g~~m~~~~~~~~~~~~~~~~~~~~~~etdalkavssyqqkf~~~s~f~~d~lpsp 439 (1118)
..++.++...++.-++...+. |..+..... +.++..++. +.+|.+.+|+.+
T Consensus 215 ---klfemhVyTmg~R~YA~~i~~----liDP~~~lF-------~dRIisrde---------------~~~~kt~dL~~~ 265 (635)
T KOG0323|consen 215 ---KLFEMHVYTMGTRDYALEIAK----LIDPEGKYF-------GDRIISRDE---------------SPFFKTLDLVLL 265 (635)
T ss_pred ---hhceeEEEeccchHHHHHHHH----HhCCCCccc-------cceEEEecC---------------CCcccccccccC
Confidence 778888888777777766655 444332211 133344433 889999999999
Q ss_pred CCCCCCCCCCCCCCcccccccccCCCCCCCCCC---------CCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCC
Q 001230 440 TPSEESGDGDGDTGGEISSATAVDQPKPVNMPT---------LGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGY 510 (1118)
Q Consensus 440 tps~~~~~~~gd~~~evss~~~~~~~~~~~p~~---------~~q~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 510 (1118)
+|.|++-.=.+|--+-|==. ... |.++ .+.+.++ ++-| ++.+-+....|.
T Consensus 266 ~p~g~smvvIIDDr~dVW~~----~~~--nLI~i~~y~yF~~~gd~nap-------~~~~--------~~~~~~~~~~~~ 324 (635)
T KOG0323|consen 266 FPCGDSMVVIIDDRSDVWPD----HKR--NLIQIAPYPYFSGQGDINAP-------PPLH--------VLRNVACSVRGA 324 (635)
T ss_pred CCCCCccEEEEeCccccccC----CCc--ceEEeeeeecccCcccccCC-------cccc--------cccchhcccccc
Confidence 99998764333333322111 111 2221 1222221 1111 334444444444
Q ss_pred CCCCCCCCcccCCCccCCcccccccCcccccCCCCCccCCCCCCccccccccccccccccCCCCCCchhhhhhccCCCCC
Q 001230 511 NPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENS 590 (1118)
Q Consensus 511 ~~~~~~~~~~k~saksrdprlr~~~~d~~~~~~~~~~~~~n~~k~~~~g~~~~~rk~k~~~ep~~d~~~~kr~r~~~~n~ 590 (1118)
-....++|+++|++++|+.+.|.+..-.+ -++..|... .+++++.++.
T Consensus 325 -----~~k~~~~s~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-p~~~~~~~~~----------------- 372 (635)
T KOG0323|consen 325 -----FFKEFDPSLKSRISEVRYEDDDESNPTSY---------SVELSANPG-PLKQDGMDEF----------------- 372 (635)
T ss_pred -----cccccCcccccccccccccccccccCccc---------ccccccccC-cccccccccc-----------------
Confidence 56677999999999999999997632111 112222111 2222222222
Q ss_pred ccccccccccCCCCccccccCCcccccccccccccccccccccCCCCCCCccCCCcccccCCCCCCCcccCccccchHHh
Q 001230 591 GVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPAL 670 (1118)
Q Consensus 591 ~~~rd~~~~~g~ggwl~~~~~~~~q~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~slp~l 670 (1118)
T Consensus 373 -------------------------------------------------------------------------------- 372 (635)
T KOG0323|consen 373 -------------------------------------------------------------------------------- 372 (635)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccChHHHHHHHHhhhhhhhHHHhhhccCCCCCCcCCCCCCCCCCCcccccccCCCCCCCCCcccCceecccCCCcc
Q 001230 671 LKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRR 750 (1118)
Q Consensus 671 lkdiavnptml~~~~~~~~q~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~d~g~irmkprdprr 750 (1118)
.|. . -+|..++|+++||++|++|
T Consensus 373 ---------------------------------------~~~-~-----------------~~~~~~~~s~~~~~~de~~ 395 (635)
T KOG0323|consen 373 ---------------------------------------VPE-E-----------------NAPEARSGSYREKKSDESD 395 (635)
T ss_pred ---------------------------------------ccc-c-----------------cchhhcccccccccccccc
Confidence 000 0 3456889999999999999
Q ss_pred cccccccccC--CCCCCccccCCCCCCCCCCCccchhhhhccCCCCCCcccccc----cCCCchhhHHhhcccccccccc
Q 001230 751 VLHGNALQRS--GSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQS----VLQPDITQQFTKNLKHIADFMS 824 (1118)
Q Consensus 751 ~lh~n~~~~~--~~~g~eq~k~~~~~~~~q~~k~~~~~~~~~~~~~~~~~~~q~----~~~pdi~~~ft~nl~~iad~~s 824 (1118)
.-+.-.-+-. .......+.-.. ...++-+..|++..-.+..++.+-.-- -..|....+++ ||++-
T Consensus 396 ~D~~L~~~~kvl~~vH~~ff~~~~---~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~------s~~~~ 466 (635)
T KOG0323|consen 396 EDGELANLLKVLKPVHKGFFAKYD---EVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDES------ADILG 466 (635)
T ss_pred cchhHHHHhhhhcccchhhhhccc---cccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcch------hhhhh
Confidence 7553222111 111222221111 112233334555544444433322222 22244444444 78877
Q ss_pred cCccCCCCCCCCCCCCCCCCCcccccccccccccCCCcCCCCCCCCCCC-CCCCCCCccccCCcccccCCchhHHHHhhH
Q 001230 825 VSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAG-PVGAHPQSAWGDVEHLFEGYDDQQKAAIQK 903 (1118)
Q Consensus 825 ~sq~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pq~~~~df~~L~~Gy~~~qra~i~k 903 (1118)
++|+.....++- ++...-+. ...++........+.-. ++.+++ ..-...+..|+...+.+..+...+++.+.+
T Consensus 467 ~~~~~g~vs~~~----~~~~~th~-i~~~~gt~k~~~a~~~~-~~~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~ 540 (635)
T KOG0323|consen 467 VAQQLGAVSAPD----VSDKTTHL-IAANAGTKKVYKAVVSG-SAKVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRR 540 (635)
T ss_pred hhhcccceeccc----ccchhhhH-HhhccCcceeecccccc-ceeEechhHHHHHHHHhcchhcccccccccccchhcc
Confidence 777765222211 11111111 01222222333322222 244444 666778889999999999999999999888
Q ss_pred HHHHhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHH
Q 001230 904 ERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFL 983 (1118)
Q Consensus 904 e~tkRL~eq~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFL 983 (1118)
+.-.+...+..+.. .++.++.++|++++-+..+..++.....++...+..+..++...+|.......+++.+ +
T Consensus 541 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~------~ 613 (635)
T KOG0323|consen 541 ESLARLYEQEKVFP-PKLSLVAPLDNELQESGKENEVNSRTELLDETGEDVSSEPPDRHLERELPSSMWIKLL------L 613 (635)
T ss_pred cchhhhhhhhcccc-hhhhccCccchhhhhccccchhcccchhhccccCcccCCCCCccchhhccccCccccc------h
Confidence 87777777777777 8999999999999988765444444455655555555555666777766778888888 8
Q ss_pred HHHhhcceEEEeccCcHHHHH
Q 001230 984 ERASKLFEMHLYTMGNKLYAT 1004 (1118)
Q Consensus 984 eeLSKlYEIVIFTAGtKeYAd 1004 (1118)
+.....|+.+.||++.+-||.
T Consensus 614 ~~~~~~~~~~~~~s~~~~~~~ 634 (635)
T KOG0323|consen 614 EKASKLYELHLYTSGNKHRAE 634 (635)
T ss_pred hhhhhHHHhccCCcccccccC
Confidence 888999999999999887764
No 11
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.07 E-value=1.3e-10 Score=130.80 Aligned_cols=155 Identities=32% Similarity=0.566 Sum_probs=116.7
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCC--cceeeeeccceEEEEeccCHHHHHHHHhhcc
Q 001230 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKP--HRHLFRFPHMGMWTKLRPGIWTFLERASKLF 990 (1118)
Q Consensus 913 ~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P--~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlY 990 (1118)
..+...+++.||+|||.|.+|+.... .+|.... . ...+... ....+......+++|+||++..|+...++.|
T Consensus 19 ~~l~q~~~~~l~~~~~~~~~h~~~~~-~~p~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~ 92 (390)
T COG5190 19 EALRQDKKLILVVDLDQTIIHTTVDP-NDPNNVN-Q----SLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLY 92 (390)
T ss_pred HHhhcCcccccccccccceecccccC-CCCCchh-h----hhhccccchhccccccccccceeeecccccchhhhhchhc
Confidence 45567899999999999999998532 2332110 0 0000000 0011112235789999999999999999999
Q ss_pred eEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCcc---ccC
Q 001230 991 EMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVW---PHN 1066 (1118)
Q Consensus 991 EIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW---~~Q 1066 (1118)
|+++||+|++.||..+++++||.|.+|..|+..++.... ...|-+++++..+ +.++|+||++.+| ..+
T Consensus 93 e~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~--------~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~ 164 (390)
T COG5190 93 ELHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGS--------LSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN 164 (390)
T ss_pred ceeeEeeccccchhhhhhccccccccccccccccccccc--------chhhhhhhcCccccccccccccccccCCccchh
Confidence 999999999999999999999999999999998875421 3568899888888 8999999999999 443
Q ss_pred CCCeEEeccccCCCCc
Q 001230 1067 KLNLIVVERYTYFPCS 1082 (1118)
Q Consensus 1067 pdNgIpIkpF~gFp~D 1082 (1118)
.|++...++..+..+
T Consensus 165 -~~~v~~~~~~~~~~~ 179 (390)
T COG5190 165 -SNFVAKSPFSKYESD 179 (390)
T ss_pred -hhhhccccccccccc
Confidence 688888886555544
No 12
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.52 E-value=0.00015 Score=64.79 Aligned_cols=62 Identities=24% Similarity=0.196 Sum_probs=50.3
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhc-ceEEEeccCcH
Q 001230 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 1000 (1118)
Q Consensus 922 TLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKl-YEIVIFTAGtK 1000 (1118)
++|||+|+||+...... . . ...+..+|++.+||+++.+. +.++|+|++.+
T Consensus 1 ~~vfD~D~tl~~~~~~~------~------------------~-----~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~ 51 (139)
T cd01427 1 AVLFDLDGTLLDSEPGI------A------------------E-----IEELELYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred CeEEccCCceEccCccc------c------------------c-----cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH
Confidence 48999999999875310 0 0 12477899999999999986 99999999999
Q ss_pred HHHHHHHHHhcC
Q 001230 1001 LYATEMAKVLDP 1012 (1118)
Q Consensus 1001 eYAd~VLdiLDP 1012 (1118)
.++..+++.+.-
T Consensus 52 ~~~~~~~~~~~~ 63 (139)
T cd01427 52 REVLELLEELGL 63 (139)
T ss_pred HHHHHHHHHcCC
Confidence 999999998754
No 13
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.94 E-value=0.0019 Score=71.98 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=60.8
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEec-cCHHHHHHHHhhc-ce
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FE 991 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkR-PGLdEFLeeLSKl-YE 991 (1118)
++.-+....+|+|||+|||.... -|.+| ||+.++|++|.+. +-
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~-----------------------------------~v~irdPgV~EaL~~LkekGik 164 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEE-----------------------------------PVRIRDPRIYDSLTELKKRGCI 164 (301)
T ss_pred ccccccceEEEEecCCCCcCCCC-----------------------------------ccccCCHHHHHHHHHHHHCCCE
Confidence 34557788999999999996531 15588 9999999999976 89
Q ss_pred EEEeccCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 001230 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1118)
Q Consensus 992 IVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRD 1025 (1118)
+.|+|.+.+.++..+++.++-.+ +|. .+++.+
T Consensus 165 LaIaTS~~Re~v~~~L~~lGLd~-YFd-vIIs~G 196 (301)
T TIGR01684 165 LVLWSYGDRDHVVESMRKVKLDR-YFD-IIISGG 196 (301)
T ss_pred EEEEECCCHHHHHHHHHHcCCCc-ccC-EEEECC
Confidence 99999999999999999988775 664 355543
No 14
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.93 E-value=0.00073 Score=65.12 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=53.7
Q ss_pred EeccCHHHHHHHHh-hcceEEEeccC-cHHHHHHHHHHhcCCC------ceeeeeEEecCCCCCCCCCCCCCcccccccc
Q 001230 974 KLRPGIWTFLERAS-KLFEMHLYTMG-NKLYATEMAKVLDPKG------VLFAGRVISRGDDGDPFDGDERVPKSKDLEG 1045 (1118)
Q Consensus 974 KkRPGLdEFLeeLS-KlYEIVIFTAG-tKeYAd~VLdiLDP~g------kLFs~RVySRDDC~~~~dGnER~~yvKDLSr 1045 (1118)
++.||+.++|+++. +.|.++|.|++ .+.|+..+++.+.+.+ .+|.. ++..++. -+ +..+.+=+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~---pk---p~~~~~a~~- 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWL---PK---SPRLVEIAL- 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCC---cH---HHHHHHHHH-
Confidence 57899999999996 47999999999 9999999999876311 13332 2211110 01 113334343
Q ss_pred ccC--CC-CeEEEEeCCCC
Q 001230 1046 VLG--ME-SAVVIIDDSVR 1061 (1118)
Q Consensus 1046 VLG--rd-srVVIVDDSp~ 1061 (1118)
.+| .. +.+++|||++.
T Consensus 101 ~lg~~~~p~~~l~igDs~~ 119 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDRPD 119 (128)
T ss_pred HhcCCCCcceEEEECCCHh
Confidence 467 55 89999999974
No 15
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.86 E-value=0.0023 Score=65.91 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=78.5
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh-hcceEEEeccC-
Q 001230 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMG- 998 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS-KlYEIVIFTAG- 998 (1118)
..+|+|||.||..-.... .+...+... | +. ...-......-+.++||+.++|+.|. +.+.+.|-|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~---~~-~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~ 71 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMIS----LLGGPFKPV---K---QN-NSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWND 71 (174)
T ss_pred cEEEEeCCCCCcCccccc----ccCCCceec---c---CC-CCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCC
Confidence 368999999998665421 111111000 0 00 00001112345789999999999997 56999999988
Q ss_pred cHHHHHHHHHHhcCC--C------ceeeeeEEecCCCCCCCCCCCCCcc---cccccccc--CCC-CeEEEEeCCCCccc
Q 001230 999 NKLYATEMAKVLDPK--G------VLFAGRVISRGDDGDPFDGDERVPK---SKDLEGVL--GME-SAVVIIDDSVRVWP 1064 (1118)
Q Consensus 999 tKeYAd~VLdiLDP~--g------kLFs~RVySRDDC~~~~dGnER~~y---vKDLSrVL--Grd-srVVIVDDSp~VW~ 1064 (1118)
...|+..+++.++-. | .+|.. +++-++. . . ..+. .+.+.+.+ |.. +.+|+|||++.-..
T Consensus 72 ~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~-~--~---~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~ 144 (174)
T TIGR01685 72 VPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKP-N--K---AKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVR 144 (174)
T ss_pred ChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCC-c--h---HHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHH
Confidence 999999999998754 1 46765 3432221 0 0 0011 12222222 344 89999999986654
Q ss_pred cCCCCeEEe
Q 001230 1065 HNKLNLIVV 1073 (1118)
Q Consensus 1065 ~QpdNgIpI 1073 (1118)
.-..+++.+
T Consensus 145 aA~~aGi~~ 153 (174)
T TIGR01685 145 EVWGYGVTS 153 (174)
T ss_pred HHHHhCCEE
Confidence 333444443
No 16
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.75 E-value=0.0029 Score=70.65 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=60.1
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEec-cCHHHHHHHHhhc-ce
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FE 991 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkR-PGLdEFLeeLSKl-YE 991 (1118)
++.-+.+..+|+|||+|||.... -|.+| |++.++|++|.+. +.
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~-----------------------------------~v~irdp~V~EtL~eLkekGik 166 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEE-----------------------------------PVRIRDPFVYDSLDELKERGCV 166 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCC-----------------------------------ccccCChhHHHHHHHHHHCCCE
Confidence 44557888999999999996641 15578 9999999999875 89
Q ss_pred EEEeccCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 001230 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1118)
Q Consensus 992 IVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRD 1025 (1118)
+.|+|.+.+.++..+++.+.-.+ +|.. +++.+
T Consensus 167 LaIvTNg~Re~v~~~Le~lgL~~-yFDv-II~~g 198 (303)
T PHA03398 167 LVLWSYGNREHVVHSLKETKLEG-YFDI-IICGG 198 (303)
T ss_pred EEEEcCCChHHHHHHHHHcCCCc-cccE-EEECC
Confidence 99999999999999999888765 5642 44433
No 17
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.74 E-value=0.0063 Score=57.52 Aligned_cols=101 Identities=17% Similarity=0.101 Sum_probs=64.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhh-cceEEEeccCc
Q 001230 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 999 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-lYEIVIFTAGt 999 (1118)
+.|+||+|+||++.... .++ | -+..+.|++.++|++|.+ .|.++|.|++.
T Consensus 1 k~~~~D~dgtL~~~~~~--~~~----~-----------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY--VDD----E-----------------------DERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CEEEEeCCCceecCCCC--CCC----H-----------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 36899999999964211 111 1 125578999999999975 59999999999
Q ss_pred --------HHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCcccccccccc-CCC-CeEEEEeCC
Q 001230 1000 --------KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME-SAVVIIDDS 1059 (1118)
Q Consensus 1000 --------KeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVL-Grd-srVVIVDDS 1059 (1118)
..++..+++.+.-. ++. ++....+ .+. ....+.+=++ .+ +.. +.+|+|+|+
T Consensus 52 ~~~~~~~~~~~~~~~l~~~~l~--~~~--~~~~~~~---~KP-~~~~~~~~~~-~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 52 GIGRGKFSSGRVARRLEELGVP--IDV--LYACPHC---RKP-KPGMFLEALK-RFNEIDPEESVYVGDQ 112 (132)
T ss_pred cccccHHHHHHHHHHHHHCCCC--EEE--EEECCCC---CCC-ChHHHHHHHH-HcCCCChhheEEEcCC
Confidence 88899999988643 222 2222111 111 1112223333 45 355 789999994
No 18
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.42 E-value=0.0063 Score=65.49 Aligned_cols=133 Identities=10% Similarity=0.076 Sum_probs=71.2
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchh-hhhhhhhcccc--CCCcceeeeeccceEEEEeccCHHHHHHHHhh-c
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHD-EILRKKEEQDR--EKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-L 989 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~-EIl~k~EeqD~--~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-l 989 (1118)
+|-.++++.++|||||||+.|+..- ..+ ..... +.... +.+....+. ....-.....|++.+||+++.+ -
T Consensus 57 ~~~~~~p~aViFDlDgTLlDSs~~~----~~G~~~~s~-~~~~~l~g~~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G 130 (237)
T TIGR01672 57 SLEGRPPIAVSFDIDDTVLFSSPGF----WRGKKTFSP-GSEDYLKNQVFWEKVN-NGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred hcCCCCCeEEEEeCCCccccCcHHH----hCCcccCCH-HHhhhhcChHHHHHHH-HhcccCCcchhHHHHHHHHHHHCC
Confidence 3345667799999999999998520 000 00000 00000 000000000 0011223444559999999976 5
Q ss_pred ceEEEeccC----cHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCCCeEEEEeCCCCcc
Q 001230 990 FEMHLYTMG----NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVW 1063 (1118)
Q Consensus 990 YEIVIFTAG----tKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrdsrVVIVDDSp~VW 1063 (1118)
+.|+|.|+. ...++..+++.+.-.. +|. -+|..++.. ..+ +-|. ..+.....+|+|-|+..=+
T Consensus 131 ~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f~-~i~~~d~~~-~~K------p~~~--~~l~~~~i~i~vGDs~~DI 197 (237)
T TIGR01672 131 DAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MNP-VIFAGDKPG-QYQ------YTKT--QWIQDKNIRIHYGDSDNDI 197 (237)
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHhCCch-hee-EEECCCCCC-CCC------CCHH--HHHHhCCCeEEEeCCHHHH
Confidence 899999998 7789999999887654 564 356544321 011 1121 1222223478888886444
No 19
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.40 E-value=0.014 Score=59.06 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=66.8
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhh-cceEEEeccC-
Q 001230 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 998 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-lYEIVIFTAG- 998 (1118)
+.|.||.|+||++...+ . |.... .-++++-||+.++|++|.+ .|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~----~---------------------~~~~~-~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS----D---------------------FQVDA-LEKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CEEEEeCCCCccccCCC----c---------------------cccCC-HHHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 57999999999985311 0 00000 0146788999999999986 5999999996
Q ss_pred --------------cHHHHHHHHHHhcCCCceeeeeEEe----cCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCC
Q 001230 999 --------------NKLYATEMAKVLDPKGVLFAGRVIS----RGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDS 1059 (1118)
Q Consensus 999 --------------tKeYAd~VLdiLDP~gkLFs~RVyS----RDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDS 1059 (1118)
...|+..+++.++-. |...+++ .+++. ..++. . ..+..+-..++.+ +++++|+|+
T Consensus 56 g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~-~~KP~-~-~~~~~~~~~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 56 GLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCD-CRKPK-I-KLLEPYLKKNLIDKARSYVIGDR 129 (161)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCC-CCCCC-H-HHHHHHHHHcCCCHHHeEEEeCC
Confidence 466888888887654 6544454 22221 11110 0 0112221234545 789999998
Q ss_pred C
Q 001230 1060 V 1060 (1118)
Q Consensus 1060 p 1060 (1118)
.
T Consensus 130 ~ 130 (161)
T TIGR01261 130 E 130 (161)
T ss_pred H
Confidence 4
No 20
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.36 E-value=0.0075 Score=61.28 Aligned_cols=138 Identities=22% Similarity=0.239 Sum_probs=92.5
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeee-ccceEEEEeccCHHHHHHHHhh-cceEEEeccCc
Q 001230 922 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRF-PHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 999 (1118)
Q Consensus 922 TLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l-~~~~vyVKkRPGLdEFLeeLSK-lYEIVIFTAGt 999 (1118)
.+|||+|+||..-...+.+.|-...+ ..-.+ ...+.-|.+||++.+||+++.. -|-+-.+|=.-
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rV--------------s~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~ 67 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRV--------------SSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF 67 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceec--------------CccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc
Confidence 48999999998765443333311100 00011 1246779999999999999975 57788999999
Q ss_pred HHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCcccccc--ccccC-----C-----CCeEEEEeCCCCccc---
Q 001230 1000 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDL--EGVLG-----M-----ESAVVIIDDSVRVWP--- 1064 (1118)
Q Consensus 1000 KeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDL--SrVLG-----r-----dsrVVIVDDSp~VW~--- 1064 (1118)
..-|-++++.||-.. ||.+.|+-. + + .|++ ..++. + .+++|.+||+.-.+.
T Consensus 68 ~~kA~~aLral~~~~-yFhy~VieP--h----------P-~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iw 133 (164)
T COG4996 68 EDKAIKALRALDLLQ-YFHYIVIEP--H----------P-YKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIW 133 (164)
T ss_pred hHHHHHHHHHhchhh-hEEEEEecC--C----------C-hhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHH
Confidence 999999999999887 898766532 1 1 1332 22221 1 279999999975443
Q ss_pred cCCCCeEEeccccCCCCchhhhC
Q 001230 1065 HNKLNLIVVERYTYFPCSRRQFG 1087 (1118)
Q Consensus 1065 ~QpdNgIpIkpF~gFp~Drrllg 1087 (1118)
.+.+|+=.|+.|..-.|-++.+.
T Consensus 134 e~~G~V~~~~~~~Di~c~~ei~s 156 (164)
T COG4996 134 EYLGNVKCLEMWKDISCYSEIFS 156 (164)
T ss_pred HhcCCeeeeEeecchHHHHHHHH
Confidence 24678888888876666555443
No 21
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.18 E-value=0.0041 Score=66.44 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=82.4
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhc-ceEEEe
Q 001230 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLY 995 (1118)
Q Consensus 917 s~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKl-YEIVIF 995 (1118)
..++..+++|+|+||...... .|. +|.. .......|++.++|+++.+. +.++|.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~---~~~--~~~~--------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~ 209 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGR---SPY--DWTK--------------------VKEDKPNPMVVELVKMYKAAGYEIIVV 209 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCC---Ccc--chhh--------------------cccCCCChhHHHHHHHHHhCCCEEEEE
Confidence 345789999999999976531 111 1211 01245789999999999765 999999
Q ss_pred ccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCC--CC---CCCccccccccccCC-C-CeEEEEeCCCCccccCCC
Q 001230 996 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFD--GD---ERVPKSKDLEGVLGM-E-SAVVIIDDSVRVWPHNKL 1068 (1118)
Q Consensus 996 TAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~d--Gn---ER~~yvKDLSrVLGr-d-srVVIVDDSp~VW~~Qpd 1068 (1118)
|+....++..+++.|+..+.+|.. ++..+.+..+.. +. ....+.+-|.+ ++. . ..+|+|||++.....-..
T Consensus 210 T~r~~~~~~~~l~~l~~~~~~f~~-i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~-~~~~~~~~~~~vgD~~~d~~~a~~ 287 (300)
T PHA02530 210 SGRDGVCEEDTVEWLRQTDIWFDD-LIGRPPDMHFQREQGDKRPDDVVKEEIFWE-KIAPKYDVLLAVDDRDQVVDMWRR 287 (300)
T ss_pred eCCChhhHHHHHHHHHHcCCchhh-hhCCcchhhhcccCCCCCCcHHHHHHHHHH-HhccCceEEEEEcCcHHHHHHHHH
Confidence 999999999999999988767754 554442110000 00 01122334443 344 3 789999999865544334
Q ss_pred CeEE
Q 001230 1069 NLIV 1072 (1118)
Q Consensus 1069 NgIp 1072 (1118)
++|.
T Consensus 288 ~Gi~ 291 (300)
T PHA02530 288 IGLE 291 (300)
T ss_pred hCCe
Confidence 4444
No 22
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.14 E-value=0.0062 Score=66.91 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=67.1
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhh-cceEEEecc
Q 001230 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 997 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-lYEIVIFTA 997 (1118)
.+++||||||+||.....-. + + ...+. +....|++.++|+.+.+ .+-+.|.|+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e----------------~-g---~~~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~ 55 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE----------------D-G---IDNLN------LSPLHKTLQEKIKTLKKQGFLLALASK 55 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc----------------C-C---ccccc------cCccHHHHHHHHHHHHhCCCEEEEEcC
Confidence 47899999999999765210 0 0 00011 12347899999999974 589999999
Q ss_pred CcHHHHHHHHHH----hcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCC
Q 001230 998 GNKLYATEMAKV----LDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1118)
Q Consensus 998 GtKeYAd~VLdi----LDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~ 1061 (1118)
....+|..+++. +.... +|..-... +. -+. ..++-+-+-++.. ..+|+|||++.
T Consensus 56 n~~~~a~~~l~~~~~~~~~~~-~f~~~~~~----~~-pk~----~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 56 NDEDDAKKVFERRKDFILQAE-DFDARSIN----WG-PKS----ESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred CCHHHHHHHHHhCccccCcHH-HeeEEEEe----cC-chH----HHHHHHHHHhCCCcCcEEEECCCHH
Confidence 999999999987 54332 45431111 11 000 1122222235554 78999999974
No 23
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.01 E-value=0.0073 Score=57.94 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=54.6
Q ss_pred EEEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.....||+.++|+.+. +.+.++|.|++.+.++..+++.+ -..+|. .++..++.. .+. ....|.+=++ .+|..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f~-~i~~~~~~~--~Kp-~~~~~~~~~~-~~~~~ 134 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYFD-LILGSDEFG--AKP-EPEIFLAALE-SLGLP 134 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcCc-EEEecCCCC--CCc-CHHHHHHHHH-HcCCC
Confidence 3456699999999995 56999999999999999999984 123665 466655432 121 1112323333 34443
Q ss_pred CeEEEEeCCC
Q 001230 1051 SAVVIIDDSV 1060 (1118)
Q Consensus 1051 srVVIVDDSp 1060 (1118)
..+|+|+|+.
T Consensus 135 ~~~l~iGDs~ 144 (154)
T TIGR01549 135 PEVLHVGDNL 144 (154)
T ss_pred CCEEEEeCCH
Confidence 3899999984
No 24
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=95.99 E-value=0.031 Score=56.07 Aligned_cols=107 Identities=13% Similarity=-0.012 Sum_probs=61.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhc-ceEEEeccC
Q 001230 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 998 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKl-YEIVIFTAG 998 (1118)
.+.|+||+|+||+-... .... . + -.+...||+.++|++|.+. |.+.|.|++
T Consensus 3 ~~~~~~d~~~t~~~~~~-----~~~~-~----------------~------~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~ 54 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD-----GYVK-S----------------P------DEWIPIPGSIEAIARLKQAGYRVVVATNQ 54 (181)
T ss_pred ccEEEEECCCCcccCCc-----cccC-C----------------H------HHeEECCCHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999865431 1100 0 0 0245789999999999875 999999998
Q ss_pred cH---------------HHHHHHHHHhcCCCceeeeeEEecCCCC-C---CCCCCCCCccccccccccCCC-CeEEEEeC
Q 001230 999 NK---------------LYATEMAKVLDPKGVLFAGRVISRGDDG-D---PFDGDERVPKSKDLEGVLGME-SAVVIIDD 1058 (1118)
Q Consensus 999 tK---------------eYAd~VLdiLDP~gkLFs~RVySRDDC~-~---~~dGnER~~yvKDLSrVLGrd-srVVIVDD 1058 (1118)
.. .+...+++.+ +.+|.. +|....++ + ..+. ....|.+-+. .+|.. .++|+|+|
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~f~~-i~~~~~~~~~~~~~~KP-~p~~~~~~~~-~l~~~~~~~~~VgD 128 (181)
T PRK08942 55 SGIARGLFTEAQLNALHEKMDWSLADR---GGRLDG-IYYCPHHPEDGCDCRKP-KPGMLLSIAE-RLNIDLAGSPMVGD 128 (181)
T ss_pred ccccCCcCCHHHHHHHHHHHHHHHHHc---CCccce-EEECCCCCCCCCcCCCC-CHHHHHHHHH-HcCCChhhEEEEeC
Confidence 73 3333444433 323544 33322111 1 1111 0112233333 35655 89999999
Q ss_pred CC
Q 001230 1059 SV 1060 (1118)
Q Consensus 1059 Sp 1060 (1118)
+.
T Consensus 129 s~ 130 (181)
T PRK08942 129 SL 130 (181)
T ss_pred CH
Confidence 97
No 25
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=95.95 E-value=0.021 Score=55.88 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=46.7
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh-hcceEEEeccCc
Q 001230 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMGN 999 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS-KlYEIVIFTAGt 999 (1118)
++|+||+|+||+..... .....| --+...||+.++|+.|. +.|.++|.|++.
T Consensus 1 ~~~~~d~dgtl~~~~~~----~~~~~~-----------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 1 PALFLDRDGVINEDTVS----DYPRSL-----------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred CeEEEeCCCceeccCCc----ccCCCH-----------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 37899999999988631 011111 01357899999999996 569999999987
Q ss_pred H---------------HHHHHHHHHhcC
Q 001230 1000 K---------------LYATEMAKVLDP 1012 (1118)
Q Consensus 1000 K---------------eYAd~VLdiLDP 1012 (1118)
+ .++..+++.++-
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (147)
T TIGR01656 54 GIGRGYFSAEAFRAPNGRVLELLRQLGV 81 (147)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 567777777653
No 26
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.79 E-value=0.055 Score=54.89 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=46.7
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh-hcceEEEecc
Q 001230 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 997 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS-KlYEIVIFTA 997 (1118)
+++.++||+|+||+-+.... ..+.. + .-|..+-||+.++|++|. +.|.|.|.|+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~-~~~~~--------------~----------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGK-VFPTS--------------A----------SDWRFLYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred cCcEEEEeCCCceEecCCCC-cccCC--------------h----------HHeEEecCCHHHHHHHHHHCCCEEEEEeC
Confidence 45679999999999764210 00000 0 013335699999999996 6799999999
Q ss_pred CcHH------------HHHHHHHHhcC
Q 001230 998 GNKL------------YATEMAKVLDP 1012 (1118)
Q Consensus 998 GtKe------------YAd~VLdiLDP 1012 (1118)
+... ++..+++.++-
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~~gl 93 (166)
T TIGR01664 67 QSGIGRGKLSAESFKNKIEAFLEKLKV 93 (166)
T ss_pred CcccccCcccHHHHHHHHHHHHHHcCC
Confidence 8763 56667776654
No 27
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=95.72 E-value=0.023 Score=60.30 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=59.3
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCC-C
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGr-d 1050 (1118)
+.+-||+.++|+.|.+ .|.+.|-|++.+.++..+++.+.-.+ +|...+++.++... .+. .+..|.+-++ .+|. .
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~-~KP-~p~~~~~a~~-~l~~~~ 175 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPA-GRP-YPWMALKNAI-ELGVYD 175 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCC-CCC-ChHHHHHHHH-HcCCCC
Confidence 5678999999999975 59999999999999999999765445 33234666554321 111 1113344444 3554 3
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
+.+|+|+|++.-.
T Consensus 176 ~~e~l~IGDs~~Di 189 (267)
T PRK13478 176 VAACVKVDDTVPGI 189 (267)
T ss_pred CcceEEEcCcHHHH
Confidence 6899999998433
No 28
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.72 E-value=0.029 Score=62.68 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=59.1
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEE-eccCHHHHHHHHhhcc-e
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTK-LRPGIWTFLERASKLF-E 991 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVK-kRPGLdEFLeeLSKlY-E 991 (1118)
++.-+.+-.+|+|||+|||.... + +. .-|.+.+.|.++.+.+ -
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~-----~------------------------------v~Ir~~~v~~sL~~Lk~~g~v 160 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEG-----D------------------------------VRIRDPAVYDSLRELKEQGCV 160 (297)
T ss_pred hccCCCCcEEEEECCCcccccCC-----c------------------------------cccCChHHHHHHHHHHHcCCE
Confidence 44557888999999999997652 0 11 2377889999998876 8
Q ss_pred EEEeccCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 001230 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1118)
Q Consensus 992 IVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRD 1025 (1118)
+++|+.|.++||..-++.+.-.+ +|.- ++++.
T Consensus 161 LvLWSyG~~eHV~~sl~~~~L~~-~Fd~-ii~~G 192 (297)
T PF05152_consen 161 LVLWSYGNREHVRHSLKELKLEG-YFDI-IICGG 192 (297)
T ss_pred EEEecCCCHHHHHHHHHHhCCcc-ccEE-EEeCC
Confidence 99999999999999999998775 6764 66654
No 29
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.69 E-value=0.033 Score=61.16 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=56.9
Q ss_pred cCCCeEEEEeCCCceeecccCC-----CCCCc----hhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh
Q 001230 917 SARKLCLVLDLDHTLLNSAKFH-----EVDPV----HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 987 (1118)
Q Consensus 917 s~kKLTLVLDLDETLIHSs~~~-----eldP~----~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS 987 (1118)
..+++.+|||||||++..+... .-.+. ..+|.. .--...-||+.+||+++.
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~--------------------~~~a~~ipGA~e~L~~L~ 131 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQ--------------------AAQAKPVAGALDFLNYAN 131 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHH--------------------cCCCCcCccHHHHHHHHH
Confidence 6789999999999999876210 00010 111111 112446799999999996
Q ss_pred h-cceEEEeccCcHHHHHHHHHHhcCCCc--eeeeeEEecC
Q 001230 988 K-LFEMHLYTMGNKLYATEMAKVLDPKGV--LFAGRVISRG 1025 (1118)
Q Consensus 988 K-lYEIVIFTAGtKeYAd~VLdiLDP~gk--LFs~RVySRD 1025 (1118)
+ .+.|+|.|+....+....++.|...|. .+...|+.|+
T Consensus 132 ~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 132 SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC
Confidence 4 589999999987777766666654442 2223466664
No 30
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=95.58 E-value=0.024 Score=58.60 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=64.3
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhh-cceEEEec-c
Q 001230 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT-M 997 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-lYEIVIFT-A 997 (1118)
.+.+|+|||.||-.......+.|-.. . .. ... --....+.-|++-|++.+.|+.|.. ...|.|=| .
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~---~-----~~--~~~--~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt 70 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFK---K-----IS--NGN--VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT 70 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EE---E------T--TS----EEETT--EE---TTHHHHHHHHHHCT--EEEEE--
T ss_pred CcEEEEcCcCCCCchhHhhccCCCce---e-----cC--CCC--EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC
Confidence 45789999999987764332222100 0 00 000 0112245568999999999999985 68888888 5
Q ss_pred CcHHHHHHHHHHhcCC---------CceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCC
Q 001230 998 GNKLYATEMAKVLDPK---------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 1061 (1118)
Q Consensus 998 GtKeYAd~VLdiLDP~---------gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~ 1061 (1118)
..+.+|.++|+.|+-. ..+|.+--+.. | .+..+.+.|.+-.|.. +.+|++||...
T Consensus 71 ~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~--------g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~ 135 (169)
T PF12689_consen 71 DEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP--------G-SKTTHFRRIHRKTGIPYEEMLFFDDESR 135 (169)
T ss_dssp S-HHHHHHHHHHTT-C----------CCECEEEESS--------S--HHHHHHHHHHHH---GGGEEEEES-HH
T ss_pred CChHHHHHHHHhcCCCccccccccchhhcchhheec--------C-chHHHHHHHHHhcCCChhHEEEecCchh
Confidence 7889999999998766 12444322222 2 1124566676666777 88999999864
No 31
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=95.54 E-value=0.054 Score=54.42 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.3
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcH
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtK 1000 (1118)
+.+-||+.++|++|.+ .|.++|.|+...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4567999999999985 599999999985
No 32
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=95.15 E-value=0.03 Score=56.18 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.1
Q ss_pred EEEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeE
Q 001230 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RV 1021 (1118)
.+..+||+.+||+.+.+.+.++|.|++.+.|++.+++.++-.. +|..++
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~ 114 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSL 114 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceE
Confidence 3567899999999998779999999999999999999887543 565544
No 33
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=94.63 E-value=0.056 Score=58.44 Aligned_cols=96 Identities=10% Similarity=0.040 Sum_probs=57.9
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceee---------eeccceEEEEeccCHHHHHHHH-
Q 001230 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLF---------RFPHMGMWTKLRPGIWTFLERA- 986 (1118)
Q Consensus 917 s~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF---------~l~~~~vyVKkRPGLdEFLeeL- 986 (1118)
..+++.+|+|+|||+++++... ++... .-.+....| -......+....||+.+||+++
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~--------~~~~~----~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~ 127 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGF--------WRGKK----TFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHV 127 (237)
T ss_pred CCCCcEEEEECcCccccCCchh--------eeeee----ccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHH
Confidence 4567799999999999975311 11000 000000001 0011233566677799999999
Q ss_pred hhcceEEEecc----CcHHHHHHHHHHhcC-CCceeeeeEEecC
Q 001230 987 SKLFEMHLYTM----GNKLYATEMAKVLDP-KGVLFAGRVISRG 1025 (1118)
Q Consensus 987 SKlYEIVIFTA----GtKeYAd~VLdiLDP-~gkLFs~RVySRD 1025 (1118)
.+-++|++-|+ ....++..+++.+.- ...+|. -++..+
T Consensus 128 ~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd 170 (237)
T PRK11009 128 KRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP-VIFAGD 170 (237)
T ss_pred HCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee-EEEcCC
Confidence 56799999998 457789999986654 233564 355443
No 34
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=94.32 E-value=0.062 Score=50.70 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=60.9
Q ss_pred EEEEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCC
Q 001230 971 MWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1049 (1118)
Q Consensus 971 vyVKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGr 1049 (1118)
......|++.+||+.+. +.|.++|+|++...++..+++.+.-. .+|.. ++..+++.. .+.+ ...|.+=+. .+|.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~-i~~~~~~~~-~Kp~-~~~~~~~~~-~~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDE-IISSDDVGS-RKPD-PDAYRRALE-KLGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSE-EEEGGGSSS-STTS-HHHHHHHHH-HHTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccccc-ccccchhhh-hhhH-HHHHHHHHH-HcCC
Confidence 46899999999999998 88999999999999999999988655 36764 665543321 1110 111222222 3455
Q ss_pred C-CeEEEEeCCC
Q 001230 1050 E-SAVVIIDDSV 1060 (1118)
Q Consensus 1050 d-srVVIVDDSp 1060 (1118)
. .++|+|||++
T Consensus 149 ~p~~~~~vgD~~ 160 (176)
T PF13419_consen 149 PPEEILFVGDSP 160 (176)
T ss_dssp SGGGEEEEESSH
T ss_pred CcceEEEEeCCH
Confidence 5 8999999997
No 35
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=94.13 E-value=0.06 Score=54.56 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=60.3
Q ss_pred EEEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
++.+.||+.+||++|.+. +.+.|.|++...++..+++.++-.. +|.. +++.++.+. .+. ....|.+-++ .+|..
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~-~KP-~~~~~~~~~~-~~~~~ 166 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDA-VITSEEEGV-EKP-HPKIFYAALK-RLGVK 166 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccE-EEEeccCCC-CCC-CHHHHHHHHH-HcCCC
Confidence 468899999999999875 9999999999999999999887654 7765 565544321 111 1112333343 45665
Q ss_pred -CeEEEEeCCC
Q 001230 1051 -SAVVIIDDSV 1060 (1118)
Q Consensus 1051 -srVVIVDDSp 1060 (1118)
+++|+|+|++
T Consensus 167 ~~~~~~igDs~ 177 (221)
T TIGR02253 167 PEEAVMVGDRL 177 (221)
T ss_pred hhhEEEECCCh
Confidence 7899999997
No 36
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=93.81 E-value=0.26 Score=56.39 Aligned_cols=131 Identities=13% Similarity=0.044 Sum_probs=73.4
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhh-cceEEEecc
Q 001230 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 997 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-lYEIVIFTA 997 (1118)
+|+.|+||=|+||+..... .. .. .....+.+.||+.+||++|.+ .|.++|.|+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~----~y---~~-------------------~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT----DF---QV-------------------DSLDKLAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred CCcEEEEeCCCCccCCCCc----cc---cc-------------------cCcccceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 4789999999999987420 00 00 011247899999999999975 599999999
Q ss_pred C---------------cHHHHHHHHHHhcCCCceeeeeEEec----CCCCCCCCCCCCCccccccccccCCC-CeEEEEe
Q 001230 998 G---------------NKLYATEMAKVLDPKGVLFAGRVISR----GDDGDPFDGDERVPKSKDLEGVLGME-SAVVIID 1057 (1118)
Q Consensus 998 G---------------tKeYAd~VLdiLDP~gkLFs~RVySR----DDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVD 1057 (1118)
. .+.|+..+++.+. .+|..-+++- ++|. +.+.. . ..+..+...++.+ +.+++|.
T Consensus 55 q~g~G~~~~~~~~l~~~~~~i~~iL~~~g---l~fd~i~i~~~~~sd~~~-~rKP~-p-~~l~~a~~~l~v~~~~svmIG 128 (354)
T PRK05446 55 QDGLGTDSFPQEDFDPPHNLMMQIFESQG---IKFDEVLICPHFPEDNCS-CRKPK-T-GLVEEYLAEGAIDLANSYVIG 128 (354)
T ss_pred CccccCccccHHHHhhHHHHHHHHHHHcC---CceeeEEEeCCcCcccCC-CCCCC-H-HHHHHHHHHcCCCcccEEEEc
Confidence 5 2455555666543 3354323432 2221 11110 0 0111111123444 7899999
Q ss_pred CCCCcc---ccCCCCeEEeccccCCCC
Q 001230 1058 DSVRVW---PHNKLNLIVVERYTYFPC 1081 (1118)
Q Consensus 1058 DSp~VW---~~QpdNgIpIkpF~gFp~ 1081 (1118)
|+..=. ...--+.|.|.+......
T Consensus 129 Ds~sDi~aAk~aGi~~I~v~~~~~~~~ 155 (354)
T PRK05446 129 DRETDVQLAENMGIKGIRYARETLNWD 155 (354)
T ss_pred CCHHHHHHHHHCCCeEEEEECCCCCHH
Confidence 985111 111235666766554443
No 37
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=93.13 E-value=0.23 Score=49.42 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=38.6
Q ss_pred EEeccCHHHHHHHH-hhcceEEEeccCcHHHHH------------HHHHHhcCCCceeeeeEEec
Q 001230 973 TKLRPGIWTFLERA-SKLFEMHLYTMGNKLYAT------------EMAKVLDPKGVLFAGRVISR 1024 (1118)
Q Consensus 973 VKkRPGLdEFLeeL-SKlYEIVIFTAGtKeYAd------------~VLdiLDP~gkLFs~RVySR 1024 (1118)
....+.+.+.|+++ .+.++|++.|+-...+.. .++++|+-.+.-|. .||-|
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd-~l~~~ 86 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYD-EIYVG 86 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCc-eEEeC
Confidence 34677888888888 568999999998888877 78889988775443 35444
No 38
>PRK08238 hypothetical protein; Validated
Probab=93.08 E-value=0.13 Score=60.59 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=59.6
Q ss_pred EEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCCC
Q 001230 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 1051 (1118)
Q Consensus 973 VKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrds 1051 (1118)
..++|++.++|+++. +.+.++|-|++.+.|++++++.+. +|. .++..++..+ ..|. +...-|...++ ..
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG----lFd-~Vigsd~~~~-~kg~---~K~~~l~~~l~-~~ 140 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG----LFD-GVFASDGTTN-LKGA---AKAAALVEAFG-ER 140 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC----CCC-EEEeCCCccc-cCCc---hHHHHHHHHhC-cc
Confidence 357899999999996 569999999999999999999984 365 3665443211 1111 11111222233 24
Q ss_pred eEEEEeCCC---CccccCCCCeEEecc
Q 001230 1052 AVVIIDDSV---RVWPHNKLNLIVVER 1075 (1118)
Q Consensus 1052 rVVIVDDSp---~VW~~QpdNgIpIkp 1075 (1118)
.++++.|+. ..|.. -+|.+.|.|
T Consensus 141 ~~~yvGDS~~Dlp~~~~-A~~av~Vn~ 166 (479)
T PRK08238 141 GFDYAGNSAADLPVWAA-ARRAIVVGA 166 (479)
T ss_pred CeeEecCCHHHHHHHHh-CCCeEEECC
Confidence 477888886 55553 467777765
No 39
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=92.93 E-value=0.17 Score=51.12 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=60.3
Q ss_pred EEEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCcccccccccc-CCC
Q 001230 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVL-Grd 1050 (1118)
.++++||+.++|+++.+.|.++|-|++...++..+++.+.-.+ +|.. +++.+++.. .+.+ ...|.+-+. .+ |..
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~~ 169 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDD-IFVSEDAGI-QKPD-KEIFNYALE-RMPKFS 169 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCE-EEEcCccCC-CCCC-HHHHHHHHH-HhcCCC
Confidence 3689999999999998889999999999999999999876554 6764 665443321 1211 112334444 45 654
Q ss_pred -CeEEEEeCCC
Q 001230 1051 -SAVVIIDDSV 1060 (1118)
Q Consensus 1051 -srVVIVDDSp 1060 (1118)
..+|+|+|++
T Consensus 170 ~~~~v~igD~~ 180 (224)
T TIGR02254 170 KEEVLMIGDSL 180 (224)
T ss_pred chheEEECCCc
Confidence 7899999986
No 40
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=92.88 E-value=0.17 Score=49.29 Aligned_cols=83 Identities=25% Similarity=0.244 Sum_probs=54.3
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.++||+.+||+.+.+ .|.++|.|++...+ ..++..++-.+ +|.. ++..+++.. .+. ....|.+=+ +.+|..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~-~KP-~~~~~~~~~-~~~~~~~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGR-GKP-DPDIYLLAL-KKLGLKP 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCC-CCC-CHHHHHHHH-HHcCCCc
Confidence 6789999999999976 59999999999999 66666565544 5765 443332221 111 011222222 245655
Q ss_pred CeEEEEeCCCC
Q 001230 1051 SAVVIIDDSVR 1061 (1118)
Q Consensus 1051 srVVIVDDSp~ 1061 (1118)
+.+|+|||++.
T Consensus 158 ~~~~~vgD~~~ 168 (183)
T TIGR01509 158 EECLFVDDSPA 168 (183)
T ss_pred ceEEEEcCCHH
Confidence 88999999973
No 41
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=92.60 E-value=0.2 Score=50.40 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=60.3
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.+.++||+.++|+.+.+ .|.+.|.|++.+.++..+++.++-.+ +|.. +++.++... .+. .+..+.+-+. .+|..
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~~-~Kp-~p~~~~~~~~-~~~~~ 157 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSV-LIGGDSLAQ-RKP-HPDPLLLAAE-RLGVA 157 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcE-EEecCCCCC-CCC-ChHHHHHHHH-HcCCC
Confidence 36789999999999975 59999999999999999999987554 6754 665543211 111 0112333333 35655
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
+.+++|+|+..-.
T Consensus 158 ~~~~~~igDs~~d~ 171 (213)
T TIGR01449 158 PQQMVYVGDSRVDI 171 (213)
T ss_pred hhHeEEeCCCHHHH
Confidence 7899999997544
No 42
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=92.13 E-value=0.27 Score=49.81 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=60.2
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.+.+.||+.++|++|.+ .|.++|.|++.+.++..+++.++-.+ +|.. +++.+++. ..+.. ...+.+=++ .++..
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~ 147 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDH-VIGSDEVP-RPKPA-PDIVREALR-LLDVP 147 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heee-EEecCcCC-CCCCC-hHHHHHHHH-HcCCC
Confidence 36788999999999975 69999999999999999999987665 6764 66555432 11110 111222222 35655
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
+++|+|+|+..-.
T Consensus 148 ~~~~l~igD~~~Di 161 (205)
T TIGR01454 148 PEDAVMVGDAVTDL 161 (205)
T ss_pred hhheEEEcCCHHHH
Confidence 7899999997433
No 43
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=92.09 E-value=0.33 Score=49.57 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=60.8
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.+++.||+.++|+++.+ .+.++|.|++.+.++..+++.++-.. +|.. +++.+++.. .+. ....+.+-+. .++..
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~-i~~~~~~~~-~Kp-~p~~~~~~~~-~~~~~ 154 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDV-VITLDDVEH-AKP-DPEPVLKALE-LLGAK 154 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeE-EEecCcCCC-CCC-CcHHHHHHHH-HcCCC
Confidence 46788999999999975 69999999999999999999987655 7764 666554321 111 0112223333 34544
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
+++|+|+|++.-.
T Consensus 155 ~~~~~~iGDs~~Di 168 (214)
T PRK13288 155 PEEALMVGDNHHDI 168 (214)
T ss_pred HHHEEEECCCHHHH
Confidence 7899999997444
No 44
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=91.97 E-value=0.24 Score=55.60 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=55.4
Q ss_pred EEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecC------CCCCCCCCCCCCcccccccc
Q 001230 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG------DDGDPFDGDERVPKSKDLEG 1045 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRD------DC~~~~dGnER~~yvKDLSr 1045 (1118)
+.++||+.+||+.+.+. |.+.|.|.+...|++.+++.|+-.. +|.+++--.+ .++...++..+...++.+..
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 67899999999999864 8999999999999999999876543 3332211110 01111111111112334433
Q ss_pred ccCCC-CeEEEEeCCCC
Q 001230 1046 VLGME-SAVVIIDDSVR 1061 (1118)
Q Consensus 1046 VLGrd-srVVIVDDSp~ 1061 (1118)
-+|.+ +.+|.|-|...
T Consensus 259 ~lgi~~~qtIaVGDg~N 275 (322)
T PRK11133 259 EYEIPLAQTVAIGDGAN 275 (322)
T ss_pred HcCCChhhEEEEECCHH
Confidence 45655 78999999973
No 45
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=91.94 E-value=0.23 Score=50.02 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=57.4
Q ss_pred EEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+...||+.++|+++.+. |.++|.|++...++..+++.+.-.. +|.. +++.++.. ..+.. ...|.+=++ .+|..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~-~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~p 165 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD-PFDA-VLSADAVR-AYKPA-PQVYQLALE-ALGVPP 165 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh-hhhe-eEehhhcC-CCCCC-HHHHHHHHH-HhCCCh
Confidence 56789999999999986 9999999999999999999875333 6764 66544332 11110 111222222 35655
Q ss_pred CeEEEEeCCC
Q 001230 1051 SAVVIIDDSV 1060 (1118)
Q Consensus 1051 srVVIVDDSp 1060 (1118)
+.+|+|+|++
T Consensus 166 ~~~~~vgD~~ 175 (198)
T TIGR01428 166 DEVLFVASNP 175 (198)
T ss_pred hhEEEEeCCH
Confidence 8899999997
No 46
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=91.90 E-value=0.33 Score=49.27 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=58.8
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.+..+||+.+||+.+.+ .+.++|.|++...|+..+++.++-.. +|. .+++.+++. ..+. .+..+.+ +-..++..
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~-~~kp-~~~~~~~-~~~~~~~~ 165 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFS-VVIGGDSLP-NKKP-DPAPLLL-ACEKLGLD 165 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Ccc-EEEcCCCCC-CCCc-ChHHHHH-HHHHcCCC
Confidence 36789999999999985 59999999999999999999887544 565 366544321 1111 0001222 22234555
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
+.+|+|+|+..-.
T Consensus 166 ~~~~i~igD~~~Di 179 (226)
T PRK13222 166 PEEMLFVGDSRNDI 179 (226)
T ss_pred hhheEEECCCHHHH
Confidence 7899999996433
No 47
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=91.13 E-value=0.3 Score=51.75 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=62.1
Q ss_pred EEEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.+.+.||+.++|++|. +.|.+.|-|++.+.|+..+++.++-.. +|.. +++.+++.. .+. ....|.+=+. .++..
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-iv~~~~~~~-~KP-~p~~~~~a~~-~~~~~ 180 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQA-VIIGSECEH-AKP-HPDPYLKALE-VLKVS 180 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcE-EEecCcCCC-CCC-ChHHHHHHHH-HhCCC
Confidence 3667899999999995 569999999999999999999987655 7865 665554432 121 1113344444 35655
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
..+|+|+|++.-.
T Consensus 181 ~~~~l~vgDs~~Di 194 (248)
T PLN02770 181 KDHTFVFEDSVSGI 194 (248)
T ss_pred hhHEEEEcCCHHHH
Confidence 7899999998333
No 48
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=91.04 E-value=0.46 Score=49.54 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=56.2
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCcccccccc---ccC
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEG---VLG 1048 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSr---VLG 1048 (1118)
...-||+.+.|+.+.+ .|.+.|.|+....+++.+++.++-.. +|.. ++.-+++. ..+ +.-.-|-. .+|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~~-~~K-----P~P~~l~~~~~~~~ 159 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDVP-PPK-----PDPEPLLLLLEKLG 159 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCCC-CCC-----cCHHHHHHHHHHhC
Confidence 5678999999999974 58999999999999999999988765 7764 45422221 111 22222222 234
Q ss_pred CC-CeEEEEeCCCC
Q 001230 1049 ME-SAVVIIDDSVR 1061 (1118)
Q Consensus 1049 rd-srVVIVDDSp~ 1061 (1118)
.+ .++|+|-|+..
T Consensus 160 ~~~~~~l~VGDs~~ 173 (220)
T COG0546 160 LDPEEALMVGDSLN 173 (220)
T ss_pred CChhheEEECCCHH
Confidence 44 58999999973
No 49
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.89 E-value=0.55 Score=56.36 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=66.6
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhh-cceEEEe
Q 001230 917 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLY 995 (1118)
Q Consensus 917 s~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-lYEIVIF 995 (1118)
..+.+++.||||+|||.+.... .-+.. + . =|..+-||+.+.|++|.+ .|.|+|+
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~-~~~~~--------------~--~--------d~~~l~pgV~e~L~~L~~~Gy~IvIv 219 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGK-VFPKG--------------P--D--------DWQIIFPEIPEKLKELEADGFKICIF 219 (526)
T ss_pred CccCcEEEEECCCCccccCCCc-cCCCC--------------H--H--------HeeecccCHHHHHHHHHHCCCEEEEE
Confidence 3567899999999999764210 00000 0 0 133356999999999975 5999999
Q ss_pred ccCcH------------HHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCcc---ccccccccCCC-CeEEEEeCC
Q 001230 996 TMGNK------------LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPK---SKDLEGVLGME-SAVVIIDDS 1059 (1118)
Q Consensus 996 TAGtK------------eYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~y---vKDLSrVLGrd-srVVIVDDS 1059 (1118)
|+... .++..|++.|+- .|. .+++-++| .+.+.. ...+ .+++..-++.+ +..++|.|.
T Consensus 220 TNQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfd-viia~~~~-~~RKP~-pGm~~~a~~~~~~~~~Id~~~S~~VGDa 293 (526)
T TIGR01663 220 TNQGGIARGKINADDFKAKIEAIVAKLGV---PFQ-VFIAIGAG-FYRKPL-TGMWDHLKEEANDGTEIQEDDCFFVGDA 293 (526)
T ss_pred ECCcccccCcccHHHHHHHHHHHHHHcCC---ceE-EEEeCCCC-CCCCCC-HHHHHHHHHhcCcccCCCHHHeEEeCCc
Confidence 99776 468888888753 354 35554433 111110 0011 12221001234 789999998
Q ss_pred C
Q 001230 1060 V 1060 (1118)
Q Consensus 1060 p 1060 (1118)
.
T Consensus 294 a 294 (526)
T TIGR01663 294 A 294 (526)
T ss_pred c
Confidence 6
No 50
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=90.67 E-value=0.19 Score=50.04 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=56.2
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCC---CCCCCCCccccccccccCC
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDP---FDGDERVPKSKDLEGVLGM 1049 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~---~dGnER~~yvKDLSrVLGr 1049 (1118)
++..||+.++|++|. |.++|.|++.+.++..+++.++-.. +|.. ++..++.... .+. .+..|.+-+. .+|.
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~-i~~~~~~~~~~~~~KP-~p~~~~~~~~-~~~~ 156 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDG-IFCFDTANPDYLLPKP-SPQAYEKALR-EAGV 156 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCe-EEEeecccCccCCCCC-CHHHHHHHHH-HhCC
Confidence 457899999999997 7899999999999999999886543 7765 5654432110 011 1112333333 3465
Q ss_pred C-CeEEEEeCCCC
Q 001230 1050 E-SAVVIIDDSVR 1061 (1118)
Q Consensus 1050 d-srVVIVDDSp~ 1061 (1118)
. +++++|+|++.
T Consensus 157 ~~~~~l~vgD~~~ 169 (184)
T TIGR01993 157 DPERAIFFDDSAR 169 (184)
T ss_pred CccceEEEeCCHH
Confidence 5 78999999963
No 51
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=90.54 E-value=0.46 Score=48.28 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=34.0
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhh-cceEEEeccC
Q 001230 921 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 998 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSK-lYEIVIFTAG 998 (1118)
+.+.+|||+|||...... . +.. .+ .=|..+-|++-+-|+++.+ -|.|+|+|+.
T Consensus 1 Kia~fD~DgTLi~~~s~~---~----f~~--------~~----------~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGK---K----FPK--------DP----------DDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STST---T----S-S--------ST----------CGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCC---c----CcC--------CH----------HHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 368899999999986311 0 000 00 0145577889999999875 7999999986
No 52
>PRK09449 dUMP phosphatase; Provisional
Probab=90.35 E-value=0.4 Score=49.04 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=59.4
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCC-C-
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGr-d- 1050 (1118)
+...||+.++|++|.+.|.+.|.|++.+.++..+++.+.-.+ +|.. ++..+++.. .+.+ ...|.+-++ .+|. .
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 168 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDL-LVISEQVGV-AKPD-VAIFDYALE-QMGNPDR 168 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCE-EEEECccCC-CCCC-HHHHHHHHH-HcCCCCc
Confidence 568999999999999889999999999999999999876554 6764 555444321 1211 112334444 3554 3
Q ss_pred CeEEEEeCCC
Q 001230 1051 SAVVIIDDSV 1060 (1118)
Q Consensus 1051 srVVIVDDSp 1060 (1118)
+.+|+|+|++
T Consensus 169 ~~~~~vgD~~ 178 (224)
T PRK09449 169 SRVLMVGDNL 178 (224)
T ss_pred ccEEEEcCCc
Confidence 6899999996
No 53
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=90.18 E-value=0.37 Score=52.25 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=61.7
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.+.+.||+.++|+.|.+ .|.++|-|++.+.|+..+++.++-.. +|.. +++.+++.. .+. ....|.+-+. .+|..
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-ii~~~d~~~-~KP-~Pe~~~~a~~-~l~~~ 181 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSV-VLAAEDVYR-GKP-DPEMFMYAAE-RLGFI 181 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcE-EEecccCCC-CCC-CHHHHHHHHH-HhCCC
Confidence 35679999999999985 59999999999999999999986544 7765 666554321 121 1112344444 45665
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
..+|+|+|+..-.
T Consensus 182 p~~~l~IgDs~~Di 195 (260)
T PLN03243 182 PERCIVFGNSNSSV 195 (260)
T ss_pred hHHeEEEcCCHHHH
Confidence 7899999996433
No 54
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=89.93 E-value=0.73 Score=46.63 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=60.8
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhc-ceEEEec
Q 001230 918 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 996 (1118)
Q Consensus 918 ~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKl-YEIVIFT 996 (1118)
.+-..||+|+|+||..... ...-|++.++|++|.+. +.++|.|
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~S 66 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------------------------------------NEAYPALRDWIEELKAAGRKLLIVS 66 (170)
T ss_pred CCCCEEEEecCCccccCCC------------------------------------CCcChhHHHHHHHHHHcCCEEEEEe
Confidence 4667899999999985421 12358999999999865 9999999
Q ss_pred cCc-HHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCC
Q 001230 997 MGN-KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV 1060 (1118)
Q Consensus 997 AGt-KeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp 1060 (1118)
++. ..++..+++.++-. .+.. +... ++ ..+.+=++ -++.. +.+++|+|+.
T Consensus 67 n~~~~~~~~~~~~~~gl~-------~~~~--~~KP-~p---~~~~~~l~-~~~~~~~~~l~IGDs~ 118 (170)
T TIGR01668 67 NNAGEQRAKAVEKALGIP-------VLPH--AVKP-PG---CAFRRAHP-EMGLTSEQVAVVGDRL 118 (170)
T ss_pred CCchHHHHHHHHHHcCCE-------EEcC--CCCC-Ch---HHHHHHHH-HcCCCHHHEEEECCcc
Confidence 999 67888877766421 1111 1110 00 01222222 34555 7899999996
No 55
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=89.66 E-value=0.59 Score=46.46 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.4
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEe
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVyS 1023 (1118)
+.++||+.++|+.+.+ -+.++|.|++...++..+++.+.... +|...++.
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~ 129 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVF 129 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEE
Confidence 6789999999999974 69999999999999999999987554 66665554
No 56
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=89.57 E-value=0.56 Score=49.35 Aligned_cols=87 Identities=15% Similarity=0.036 Sum_probs=60.8
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCC--
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-- 1049 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGr-- 1049 (1118)
+.+.||+.+||++|.+ .+.+.|-|++.+.++..+++.+.-.+ +|-..+++.++... .+. .+..|.+-+. .+|.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~-~KP-~p~~~~~a~~-~l~~~~ 173 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPA-GRP-APWMALKNAI-ELGVYD 173 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCC-CCC-CHHHHHHHHH-HcCCCC
Confidence 5788999999999975 59999999999999999999887665 44345776654321 111 1113444444 3564
Q ss_pred CCeEEEEeCCCCcc
Q 001230 1050 ESAVVIIDDSVRVW 1063 (1118)
Q Consensus 1050 dsrVVIVDDSp~VW 1063 (1118)
...+|+|.|++.=.
T Consensus 174 ~~~~l~IGDs~~Di 187 (253)
T TIGR01422 174 VAACVKVGDTVPDI 187 (253)
T ss_pred chheEEECCcHHHH
Confidence 37899999997433
No 57
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=89.15 E-value=1.1 Score=48.92 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=72.2
Q ss_pred CCCCccccCCcccccCCchhHHHHhhHHHHHhHHHHHhhhcCCCeEEEEeCCCceeecccCC-----C---CCCc-hhhh
Q 001230 877 AHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFH-----E---VDPV-HDEI 947 (1118)
Q Consensus 877 ~~pq~~~~df~~L~~Gy~~~qra~i~ke~tkRL~eq~rLLs~kKLTLVLDLDETLIHSs~~~-----e---ldP~-~~EI 947 (1118)
+-|+.+.....+-..|-+...-...-.+.++.-..+..+-..+|..+|||+|||++...... . .++. ..+|
T Consensus 34 ~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~w 113 (229)
T TIGR01675 34 TVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLW 113 (229)
T ss_pred cCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHH
Confidence 34555544444333333332222222234444444444456799999999999999876210 0 0110 1122
Q ss_pred hhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 001230 948 LRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1118)
Q Consensus 948 l~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRD 1025 (1118)
+... -...-|+..+|++++. +-++|++.|.-........++.|--.|--.-.+++-|.
T Consensus 114 v~~~--------------------~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 114 LGKG--------------------AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred HHcC--------------------CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 2110 1235689999999985 57999999999888866677776555521113455553
No 58
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=89.01 E-value=1 Score=44.22 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=40.4
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEe
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVyS 1023 (1118)
+.++||+.++|+.+.+ .+.++|.|++...++..+++.++-.. +|.. +++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIE-IYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeE-Eec
Confidence 6899999999999976 49999999999999999999876443 5543 453
No 59
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=88.71 E-value=0.71 Score=47.13 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=40.9
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeE
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RV 1021 (1118)
+.++||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|..++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~ 132 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRL 132 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEE
Confidence 5689999999999986 59999999999999999999876554 665543
No 60
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=88.60 E-value=0.36 Score=49.39 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=58.2
Q ss_pred EEEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
.+...||+.+||+.+. +.+.|.|++.+.++..+++.++-.. +|...+++.++... .+.. ...|.+=+. .+|..
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~-~KP~-p~~~~~a~~-~~~~~p 159 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQR-WKPD-PALMFHAAE-AMNVNV 159 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 3677899999999994 8999999999999999998876544 66544665443221 1110 112223333 34555
Q ss_pred CeEEEEeCCCCccc
Q 001230 1051 SAVVIIDDSVRVWP 1064 (1118)
Q Consensus 1051 srVVIVDDSp~VW~ 1064 (1118)
+++|+|+|++.-..
T Consensus 160 ~~~l~igDs~~di~ 173 (221)
T PRK10563 160 ENCILVDDSSAGAQ 173 (221)
T ss_pred HHeEEEeCcHhhHH
Confidence 78999999985543
No 61
>PRK06769 hypothetical protein; Validated
Probab=88.56 E-value=0.81 Score=46.45 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.9
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcH
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNK 1000 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtK 1000 (1118)
+.+-||+.++|++|.+ .|.+.|.|+...
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 4467999999999975 599999999875
No 62
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=88.56 E-value=0.26 Score=50.25 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=41.7
Q ss_pred EEeccCHHHHHHHHhhc-ceEEEeccCcHH-H---HHHHHHHhcCC-CceeeeeE-EecCCCCCCCCCCCCCcccccccc
Q 001230 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKL-Y---ATEMAKVLDPK-GVLFAGRV-ISRGDDGDPFDGDERVPKSKDLEG 1045 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKl-YEIVIFTAGtKe-Y---Ad~VLdiLDP~-gkLFs~RV-ySRDDC~~~~dGnER~~yvKDLSr 1045 (1118)
+..=||+.+.|++|.+. |++++-|+.... | +..=.+.|+-. +.++..++ +..+ |.+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~---------------K~~-- 134 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD---------------KTL-- 134 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS---------------GGG--
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC---------------CCe--
Confidence 66779999999999987 477777776654 2 33445556533 11232233 3211 322
Q ss_pred ccCCCCeEEEEeCCCCccccCCCCe
Q 001230 1046 VLGMESAVVIIDDSVRVWPHNKLNL 1070 (1118)
Q Consensus 1046 VLGrdsrVVIVDDSp~VW~~QpdNg 1070 (1118)
++.+ |+|||++.....-...+
T Consensus 135 -v~~D---vlIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 135 -VGGD---VLIDDRPHNLEQFANAG 155 (191)
T ss_dssp -C--S---EEEESSSHHHSS-SSES
T ss_pred -Eecc---EEecCChHHHHhccCCC
Confidence 2222 78999987765443444
No 63
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=88.26 E-value=0.72 Score=47.49 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=60.2
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.+.||+.++|+.+.+ .|.++|.|++.+.++..+++.+.-.+ +|.. +++.++... .+.. ...+..-++ .+|..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~~-~Kp~-~~~~~~~~~-~~~~~~ 165 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDA-LASAEKLPY-SKPH-PEVYLNCAA-KLGVDP 165 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccE-EEEcccCCC-CCCC-HHHHHHHHH-HcCCCH
Confidence 5678999999999975 59999999999999999999887555 6764 666543211 1110 112222232 34555
Q ss_pred CeEEEEeCCCCccc
Q 001230 1051 SAVVIIDDSVRVWP 1064 (1118)
Q Consensus 1051 srVVIVDDSp~VW~ 1064 (1118)
+++|+|+|+..-+.
T Consensus 166 ~~~~~igDs~~Di~ 179 (222)
T PRK10826 166 LTCVALEDSFNGMI 179 (222)
T ss_pred HHeEEEcCChhhHH
Confidence 78999999985553
No 64
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=87.40 E-value=1.2 Score=46.61 Aligned_cols=87 Identities=17% Similarity=0.104 Sum_probs=59.8
Q ss_pred EEEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
++.+.||+.++|+.|.+. +.+.|.|++...++..+++.++-.. +|.. +++.+++.. .+. .+..+.+-++ .+|..
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~-~KP-~p~~~~~~~~-~l~~~ 167 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAV-LIGGDTLAE-RKP-HPLPLLVAAE-RIGVA 167 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccE-EEecCcCCC-CCC-CHHHHHHHHH-HhCCC
Confidence 468899999999999764 8999999999999999999886544 5653 555443321 111 1112333333 45655
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
+.+|+|+|++.-.
T Consensus 168 p~~~l~IGDs~~Di 181 (229)
T PRK13226 168 PTDCVYVGDDERDI 181 (229)
T ss_pred hhhEEEeCCCHHHH
Confidence 8899999997433
No 65
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=87.37 E-value=0.94 Score=45.96 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=59.9
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-C
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-s 1051 (1118)
+...|++.++|+.+.+.|.++|.|+|...++...+..+. =..+|.. ++.-++.+ ..+.+ +..|..-+. .+|.. .
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g-~~KP~-~~~f~~~~~-~~g~~p~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVG-VAKPD-PEIFEYALE-KLGVPPE 172 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccc-cCCCC-cHHHHHHHH-HcCCCcc
Confidence 678899999999999889999999999999999999876 3347876 44444433 12211 111222333 34554 7
Q ss_pred eEEEEeCCCCcc
Q 001230 1052 AVVIIDDSVRVW 1063 (1118)
Q Consensus 1052 rVVIVDDSp~VW 1063 (1118)
.+++|||+...-
T Consensus 173 ~~l~VgD~~~~d 184 (229)
T COG1011 173 EALFVGDSLEND 184 (229)
T ss_pred eEEEECCChhhh
Confidence 899999997544
No 66
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=87.08 E-value=1.1 Score=48.74 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=57.7
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.++||+.++|+.+.+ .|.++|.|++...++..+++.++-.+ +|.. +++.+++. ..+. .. ..++.+-+.+|..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~-i~~~d~~~-~~Kp-~p-~~~~~~~~~~g~~~ 174 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRW-IIGGDTLP-QKKP-DP-AALLFVMKMAGVPP 174 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeE-EEecCCCC-CCCC-Cc-HHHHHHHHHhCCCh
Confidence 5679999999999974 69999999999999999999876544 6754 66554321 1111 00 0122222245655
Q ss_pred CeEEEEeCCCCc
Q 001230 1051 SAVVIIDDSVRV 1062 (1118)
Q Consensus 1051 srVVIVDDSp~V 1062 (1118)
.++|+|+|+..-
T Consensus 175 ~~~l~IGD~~~D 186 (272)
T PRK13223 175 SQSLFVGDSRSD 186 (272)
T ss_pred hHEEEECCCHHH
Confidence 799999999633
No 67
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=86.64 E-value=1.8 Score=43.28 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=69.0
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
+++++|+. -|++|.+ .+.++|.|+..+..+..+++.+.-.. +|.. .. -+. ..++.+..-+|..
T Consensus 28 ~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~~~--------~~-~k~----~~~~~~~~~~~~~ 91 (154)
T TIGR01670 28 AFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LYQG--------QS-NKL----IAFSDILEKLALA 91 (154)
T ss_pred EEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EEec--------cc-chH----HHHHHHHHHcCCC
Confidence 34677776 5777765 68999999999999999999886443 3321 00 011 1223332234555
Q ss_pred -CeEEEEeCCCCccccCCCCeEEeccccCCCCchhhhCCCCCCccccccccCCCcchHHHHHHHHhh
Q 001230 1051 -SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVRQQ 1116 (1118)
Q Consensus 1051 -srVVIVDDSp~VW~~QpdNgIpIkpF~gFp~DrrllgL~~pSL~El~~DE~~~DGtLAn~L~vL~~ 1116 (1118)
+.+++|-|+..=...-...++.+.-..... .. ......-.+...++|+++.++..|-.
T Consensus 92 ~~~~~~vGDs~~D~~~~~~ag~~~~v~~~~~----~~----~~~a~~i~~~~~~~g~~~~~~~~~~~ 150 (154)
T TIGR01670 92 PENVAYIGDDLIDWPVMEKVGLSVAVADAHP----LL----IPRADYVTRIAGGRGAVREVCELLLL 150 (154)
T ss_pred HHHEEEECCCHHHHHHHHHCCCeEecCCcCH----HH----HHhCCEEecCCCCCcHHHHHHHHHHH
Confidence 789999998744432223333332222221 11 11122333566789999888776543
No 68
>PRK11587 putative phosphatase; Provisional
Probab=86.56 E-value=1.3 Score=45.80 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=58.1
Q ss_pred EEEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
.+.+.||+.+||+.|. +.|.+.|-|++...++..+++...- . +|. .+++.++... .++ .+..|.+-+. .+|..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~-~~~-~i~~~~~~~~-~KP-~p~~~~~~~~-~~g~~ 154 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-P-APE-VFVTAERVKR-GKP-EPDAYLLGAQ-LLGLA 154 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-C-Ccc-EEEEHHHhcC-CCC-CcHHHHHHHH-HcCCC
Confidence 3678999999999997 5699999999999988888776543 2 343 3565543321 121 1223445554 35655
Q ss_pred -CeEEEEeCCCCcc
Q 001230 1051 -SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 -srVVIVDDSp~VW 1063 (1118)
+.+|+|+|++.-.
T Consensus 155 p~~~l~igDs~~di 168 (218)
T PRK11587 155 PQECVVVEDAPAGV 168 (218)
T ss_pred cccEEEEecchhhh
Confidence 8899999997433
No 69
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=86.51 E-value=1.3 Score=43.41 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=40.6
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEE
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVy 1022 (1118)
+.+|||+.++|+.+.+ .+.++|.|++.+.|+..+++.+.-.. +|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-heeeeEE
Confidence 5689999999999965 58999999999999999999886543 5665543
No 70
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.40 E-value=1.4 Score=47.34 Aligned_cols=57 Identities=21% Similarity=0.096 Sum_probs=42.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhc-ceEEEeccC
Q 001230 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 998 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKl-YEIVIFTAG 998 (1118)
.+.|++||||||+.... ...|...+.|+++.+. +.++|-|.-
T Consensus 4 ~kli~~DlDGTLl~~~~-------------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR 46 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------------------------------------YSYEPAKPALKALKEKGIPVIPCTSK 46 (273)
T ss_pred ceEEEEcCcccCcCCCC-------------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56899999999996531 0124566778887764 888898888
Q ss_pred cHHHHHHHHHHhcCC
Q 001230 999 NKLYATEMAKVLDPK 1013 (1118)
Q Consensus 999 tKeYAd~VLdiLDP~ 1013 (1118)
...++..+++.|+-.
T Consensus 47 ~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 47 TAAEVEVLRKELGLE 61 (273)
T ss_pred CHHHHHHHHHHcCCC
Confidence 888888888887643
No 71
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=86.26 E-value=0.75 Score=48.32 Aligned_cols=94 Identities=17% Similarity=0.032 Sum_probs=61.8
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+...||+.++|+.+.+ .|.+.|-|++.+.++..+++.+.-.. +|.. +++.++... .+. .+..|.+=++ .+|..
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-iv~s~~~~~-~KP-~p~~~~~~~~-~~~~~p 166 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDL-LLSTHTFGY-PKE-DQRLWQAVAE-HTGLKA 166 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCE-EEEeeeCCC-CCC-CHHHHHHHHH-HcCCCh
Confidence 6788999999999986 58999999999999999998865433 6765 554333211 111 0112333333 35655
Q ss_pred CeEEEEeCCCCccccCCCCeE
Q 001230 1051 SAVVIIDDSVRVWPHNKLNLI 1071 (1118)
Q Consensus 1051 srVVIVDDSp~VW~~QpdNgI 1071 (1118)
+.+|+|+|++.-...-...++
T Consensus 167 ~~~l~igDs~~di~aA~~aG~ 187 (224)
T PRK14988 167 ERTLFIDDSEPILDAAAQFGI 187 (224)
T ss_pred HHEEEEcCCHHHHHHHHHcCC
Confidence 789999999754432233444
No 72
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=85.98 E-value=1.4 Score=45.61 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=41.5
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeE
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RV 1021 (1118)
.+.+|||+.+||+.+.+ .+.++|.|++...|+.++++.+.+...++..++
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~ 118 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEA 118 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEecee
Confidence 47899999999999987 499999999999999999998865444554433
No 73
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=85.86 E-value=1.6 Score=46.10 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=13.5
Q ss_pred CCeEEEEeCCCceeecc
Q 001230 919 RKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs 935 (1118)
+-..+++|+|+||.+..
T Consensus 7 ~~~~~~~D~dG~l~~~~ 23 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGN 23 (242)
T ss_pred cCCEEEEecccccccCC
Confidence 34578999999998764
No 74
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=85.75 E-value=0.78 Score=45.15 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=53.4
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.+.||+.+||+.+.+ .|.++|-|++ .++..+++.++-.+ +|.. ++..+++.. .+. ....|.+=++ -++..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~-v~~~~~~~~-~kp-~~~~~~~~~~-~~~~~~ 159 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDA-IVDADEVKE-GKP-HPETFLLAAE-LLGVSP 159 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCE-eeehhhCCC-CCC-ChHHHHHHHH-HcCCCH
Confidence 6789999999999976 4889999988 88999998765444 6765 554433211 111 0111222232 34554
Q ss_pred CeEEEEeCCCC
Q 001230 1051 SAVVIIDDSVR 1061 (1118)
Q Consensus 1051 srVVIVDDSp~ 1061 (1118)
+.+|+|+|+..
T Consensus 160 ~~~v~IgD~~~ 170 (185)
T TIGR02009 160 NECVVFEDALA 170 (185)
T ss_pred HHeEEEeCcHh
Confidence 78999999963
No 75
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=85.73 E-value=1 Score=52.20 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=60.0
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.+.||+.+||+.|.+ .+.+.|-|++.+.|+..+++.++-.. ||.. +++.+++.. .+. ....|.+-+. .+|..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~-Iv~sddv~~-~KP-~Peifl~A~~-~lgl~P 289 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSV-IVAAEDVYR-GKP-DPEMFIYAAQ-LLNFIP 289 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceE-EEecCcCCC-CCC-CHHHHHHHHH-HcCCCc
Confidence 4578999999999965 59999999999999999999887554 7875 776655421 111 1112334444 45654
Q ss_pred CeEEEEeCCCC
Q 001230 1051 SAVVIIDDSVR 1061 (1118)
Q Consensus 1051 srVVIVDDSp~ 1061 (1118)
+.+|+|+|+..
T Consensus 290 eecl~IGDS~~ 300 (381)
T PLN02575 290 ERCIVFGNSNQ 300 (381)
T ss_pred ccEEEEcCCHH
Confidence 78999999763
No 76
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=85.71 E-value=1.2 Score=49.47 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=45.2
Q ss_pred hHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEE-----EEeccCHHHH
Q 001230 908 RLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMW-----TKLRPGIWTF 982 (1118)
Q Consensus 908 RL~eq~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vy-----VKkRPGLdEF 982 (1118)
.+.++.+.-+.+++.+|||||||++..+. ..+..+.. ..+ |.-..-..| -+.=||..+|
T Consensus 67 ~~d~~~k~~k~K~~aVvlDlDETvLdNs~------Yqgy~v~n------nk~----f~pe~Wd~wV~a~~sk~vpGA~eF 130 (274)
T COG2503 67 ALDTQAKKKKGKKKAVVLDLDETVLDNSA------YQGYQVLN------NKG----FTPETWDKWVQAKKSKAVPGAVEF 130 (274)
T ss_pred HHHhhhccccCCCceEEEecchHhhcCcc------ccchhhhc------CCC----CCccchHHHHhhcccccCccHHHH
Confidence 34445566778889999999999998864 22211100 000 111000112 4566999999
Q ss_pred HHHHhhcce-EEEeccCcHHH
Q 001230 983 LERASKLFE-MHLYTMGNKLY 1002 (1118)
Q Consensus 983 LeeLSKlYE-IVIFTAGtKeY 1002 (1118)
|+++.++-- |+.-|+-.+.-
T Consensus 131 l~Yvn~~Gg~ifyiSNR~~~~ 151 (274)
T COG2503 131 LNYVNSNGGKIFYISNRDQEN 151 (274)
T ss_pred HHHHHhcCcEEEEEeccchhc
Confidence 999976644 44444444443
No 77
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=85.61 E-value=1.4 Score=44.09 Aligned_cols=13 Identities=62% Similarity=0.744 Sum_probs=11.6
Q ss_pred EEEeCCCceeecc
Q 001230 923 LVLDLDHTLLNSA 935 (1118)
Q Consensus 923 LVLDLDETLIHSs 935 (1118)
|++||||||+++.
T Consensus 1 i~~DlDGTLl~~~ 13 (254)
T PF08282_consen 1 IFSDLDGTLLNSD 13 (254)
T ss_dssp EEEECCTTTCSTT
T ss_pred cEEEECCceecCC
Confidence 6899999999865
No 78
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=85.53 E-value=0.95 Score=44.91 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=58.1
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-C
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-s 1051 (1118)
+..-|++ ++|+.+.+.+.+.|-|++.+.++..+++.+.=.+ +|.. +++.+++.. .+. .+..+.+-++ .+|.. +
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~~-~KP-~p~~~~~~~~-~~~~~~~ 160 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDA-VVAADDVQH-HKP-APDTFLRCAQ-LMGVQPT 160 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceE-EEehhhccC-CCC-ChHHHHHHHH-HcCCCHH
Confidence 3455764 8899998879999999999999999999986554 7764 777664321 111 1112333333 35655 7
Q ss_pred eEEEEeCCCCccc
Q 001230 1052 AVVIIDDSVRVWP 1064 (1118)
Q Consensus 1052 rVVIVDDSp~VW~ 1064 (1118)
.+|+|+|++.-+.
T Consensus 161 ~~l~igDs~~di~ 173 (188)
T PRK10725 161 QCVVFEDADFGIQ 173 (188)
T ss_pred HeEEEeccHhhHH
Confidence 8999999965443
No 79
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=84.65 E-value=1.8 Score=40.94 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=24.1
Q ss_pred cCHHHHHHHHhhc-ceEEEeccCc----HHHHHHH
Q 001230 977 PGIWTFLERASKL-FEMHLYTMGN----KLYATEM 1006 (1118)
Q Consensus 977 PGLdEFLeeLSKl-YEIVIFTAGt----KeYAd~V 1006 (1118)
||..+||+++.+. ..+++.|+.+ ..|+..+
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 8999999999875 8999999998 5566555
No 80
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=84.40 E-value=1.8 Score=43.65 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=53.0
Q ss_pred EEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.+-||+.++|++|.+. |.++|.|++...+ ..+++.+.-.+ +|.. ++..+++. ..+.+ +..+.+-++ .+|..
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~~ 177 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDF-VVTSYEVG-AEKPD-PKIFQEALE-RAGISP 177 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcce-EEeecccC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 36789999999999864 9999999998764 67777664433 6764 55443332 11111 112333333 35655
Q ss_pred CeEEEEeCCC
Q 001230 1051 SAVVIIDDSV 1060 (1118)
Q Consensus 1051 srVVIVDDSp 1060 (1118)
.++|+|+|+.
T Consensus 178 ~~~~~IgD~~ 187 (203)
T TIGR02252 178 EEALHIGDSL 187 (203)
T ss_pred hHEEEECCCc
Confidence 8899999986
No 81
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=84.20 E-value=1.8 Score=43.98 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=55.5
Q ss_pred EeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-C
Q 001230 974 KLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1118)
Q Consensus 974 KkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-s 1051 (1118)
+..|+..++|+.|.+ -+.+.|.|++.+.++..+++.+.-.. +|.. +++.++... +. .+..+.+-++ -+|.. +
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~-~~~~~~~~~--KP-~p~~~~~~~~-~~~~~~~ 179 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPV-QIWMEDCPP--KP-NPEPLILAAK-ALGVEAC 179 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCE-EEeecCCCC--Cc-CHHHHHHHHH-HhCcCcc
Confidence 345566999999985 49999999999999999999886554 6764 565554221 21 1112333333 34555 7
Q ss_pred eEEEEeCCC
Q 001230 1052 AVVIIDDSV 1060 (1118)
Q Consensus 1052 rVVIVDDSp 1060 (1118)
.+|+|+|++
T Consensus 180 ~~i~vGD~~ 188 (197)
T TIGR01548 180 HAAMVGDTV 188 (197)
T ss_pred cEEEEeCCH
Confidence 899999986
No 82
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=84.08 E-value=2.3 Score=45.05 Aligned_cols=18 Identities=50% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCeEEEEeCCCceeeccc
Q 001230 919 RKLCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs~ 936 (1118)
..+.|++||||||+....
T Consensus 2 ~~kli~~DlDGTLl~~~~ 19 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK 19 (264)
T ss_pred CeeEEEEcCCCCccCCCC
Confidence 357899999999998863
No 83
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=82.30 E-value=2.3 Score=47.45 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeeccc
Q 001230 921 LCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~ 936 (1118)
+.+++||||||+++..
T Consensus 1 ~~~ifD~DGvL~~g~~ 16 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK 16 (321)
T ss_pred CEEEEeCcCceECCcc
Confidence 4689999999999863
No 84
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=82.12 E-value=1.8 Score=47.73 Aligned_cols=84 Identities=25% Similarity=0.254 Sum_probs=57.4
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCcccccc----c---c
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDL----E---G 1045 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDL----S---r 1045 (1118)
+|.-|-|++||-.|.+.+ .+|||++.+..|..+++.|.-.. .|.. |+ ||...+..+.....|-. . +
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii----~~e~~np~~~~~vcKP~~~afE~a~k 171 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-II----CFETLNPIEKTVVCKPSEEAFEKAMK 171 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-ee----EeeccCCCCCceeecCCHHHHHHHHH
Confidence 788888999999999888 99999999999999999997665 5654 33 22222221110111211 1 1
Q ss_pred ccCCC--CeEEEEeCCCCcc
Q 001230 1046 VLGME--SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1046 VLGrd--srVVIVDDSp~VW 1063 (1118)
+.|.+ .+++++||+....
T Consensus 172 ~agi~~p~~t~FfDDS~~NI 191 (244)
T KOG3109|consen 172 VAGIDSPRNTYFFDDSERNI 191 (244)
T ss_pred HhCCCCcCceEEEcCchhhH
Confidence 34544 7999999997554
No 85
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=81.52 E-value=3.4 Score=43.88 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=20.8
Q ss_pred HHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhc
Q 001230 979 IWTFLERASK-LFEMHLYTMGNKLYATEMAKVLD 1011 (1118)
Q Consensus 979 LdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLD 1011 (1118)
..++|+++.+ ...++|.|.-+...+..+++.|.
T Consensus 20 ~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg 53 (225)
T TIGR02461 20 AREALEELKDLGFPIVFVSSKTRAEQEYYREELG 53 (225)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 4566666654 36677777666666666666554
No 86
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=81.32 E-value=2.4 Score=43.58 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=25.4
Q ss_pred HHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcC
Q 001230 979 IWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 1012 (1118)
Q Consensus 979 LdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP 1012 (1118)
..+.|+++.+ ...++|.|.-....+..+++.|.-
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 3566777664 478888888888888888887753
No 87
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=81.02 E-value=1.3 Score=45.01 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=56.3
Q ss_pred EEEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCC
Q 001230 971 MWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1049 (1118)
Q Consensus 971 vyVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGr 1049 (1118)
++..++||+.++|+.+.+ .|.++|-|++.+..+..++....--..+|.. +|+-+++.. .+. ....|.+-++ .+|.
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~-v~~s~~~~~-~KP-~p~~~~~~~~-~~~~ 156 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADH-IYLSQDLGM-RKP-EARIYQHVLQ-AEGF 156 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCE-EEEecccCC-CCC-CHHHHHHHHH-HcCC
Confidence 346789999999999975 5999999999988766554331111236654 555444332 221 1112333344 4566
Q ss_pred C-CeEEEEeCCCCcc
Q 001230 1050 E-SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1050 d-srVVIVDDSp~VW 1063 (1118)
. +.+|+|||++.-.
T Consensus 157 ~p~~~l~vgD~~~di 171 (199)
T PRK09456 157 SAADAVFFDDNADNI 171 (199)
T ss_pred ChhHeEEeCCCHHHH
Confidence 5 8999999997443
No 88
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=80.59 E-value=3.5 Score=42.45 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.9
Q ss_pred eEEEEeCCCceeec
Q 001230 921 LCLVLDLDHTLLNS 934 (1118)
Q Consensus 921 LTLVLDLDETLIHS 934 (1118)
+.+++||||||+..
T Consensus 2 k~v~~DlDGTLl~~ 15 (215)
T TIGR01487 2 KLVAIDIDGTLTEP 15 (215)
T ss_pred cEEEEecCCCcCCC
Confidence 37899999999964
No 89
>PLN02940 riboflavin kinase
Probab=80.45 E-value=1.6 Score=50.02 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=56.7
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHH-HhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAK-VLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLd-iLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
+.+.||+.++|+.|.+ .+.+.|-|++.+.++..+++ .++=. .+|.. +++.+++.. .+. .+..+.+-++ .+|..
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~-ii~~d~v~~-~KP-~p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSV-IVGGDEVEK-GKP-SPDIFLEAAK-RLNVE 166 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCE-EEehhhcCC-CCC-CHHHHHHHHH-HcCCC
Confidence 5678999999999965 48999999999999998886 44433 36765 666555421 111 1112333333 34554
Q ss_pred -CeEEEEeCCCC
Q 001230 1051 -SAVVIIDDSVR 1061 (1118)
Q Consensus 1051 -srVVIVDDSp~ 1061 (1118)
.++|+|+|+..
T Consensus 167 p~~~l~VGDs~~ 178 (382)
T PLN02940 167 PSNCLVIEDSLP 178 (382)
T ss_pred hhHEEEEeCCHH
Confidence 78999999974
No 90
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=79.92 E-value=2.8 Score=42.84 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=57.8
Q ss_pred EEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCC-CceeeeeEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~-gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
+.+.||+.+||+.|. +.|.+.|-|++.+.++..+++.++-. +.+|.. +++.++-. ..+. ....+.+=+. .+|..
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~-i~~~~~~~-~~KP-~p~~~~~a~~-~~~~~ 161 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDA-VVCPSDVA-AGRP-APDLILRAME-LTGVQ 161 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCE-EEcCCcCC-CCCC-CHHHHHHHHH-HcCCC
Confidence 478999999999996 56999999999999999999988754 157764 66554311 0111 0111223233 34542
Q ss_pred --CeEEEEeCCC
Q 001230 1051 --SAVVIIDDSV 1060 (1118)
Q Consensus 1051 --srVVIVDDSp 1060 (1118)
+.+|+|+|++
T Consensus 162 ~~~~~~~igD~~ 173 (220)
T TIGR03351 162 DVQSVAVAGDTP 173 (220)
T ss_pred ChhHeEEeCCCH
Confidence 6899999997
No 91
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=79.84 E-value=1.5 Score=46.25 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=64.6
Q ss_pred EEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
++..||+.+||+.|... .-+.+-|.+.+..+..+++.+.-.+ +|...+++ ++.... +. .+..|.+-.. .||..
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~-~dv~~~-KP-~Pd~yL~Aa~-~Lgv~P 159 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTA-DDVARG-KP-APDIYLLAAE-RLGVDP 159 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhccH-HHHhcC-CC-CCHHHHHHHH-HcCCCh
Confidence 68999999999999977 9999999999999999998887665 78775553 332211 11 1235677776 46766
Q ss_pred CeEEEEeCCCCcc
Q 001230 1051 SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1051 srVVIVDDSp~VW 1063 (1118)
.++|+|+|++.--
T Consensus 160 ~~CvviEDs~~Gi 172 (221)
T COG0637 160 EECVVVEDSPAGI 172 (221)
T ss_pred HHeEEEecchhHH
Confidence 8999999997544
No 92
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=79.71 E-value=3.2 Score=46.47 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=78.8
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHh---cCCCceeeeeEEec-CCCCCCCCCCCCCcccc--cc-
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL---DPKGVLFAGRVISR-GDDGDPFDGDERVPKSK--DL- 1043 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiL---DP~gkLFs~RVySR-DDC~~~~dGnER~~yvK--DL- 1043 (1118)
-+.+|||+.+||+.|.+ .+.++|+|+|...++..+++.+ ++...++.+++.-. +.+..-+.+.--..+-| ++
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 47899999999999965 4899999999999999999964 34545666665432 22111111100001112 11
Q ss_pred ---ccccC--CC-CeEEEEeCCC-Cccc----cCCCCeEEeccccCCCCchhhhCCCCCCccccccccCCCcchHHHHHH
Q 001230 1044 ---EGVLG--ME-SAVVIIDDSV-RVWP----HNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLG 1112 (1118)
Q Consensus 1044 ---SrVLG--rd-srVVIVDDSp-~VW~----~QpdNgIpIkpF~gFp~DrrllgL~~pSL~El~~DE~~~DGtLAn~L~ 1112 (1118)
...++ .. +++|+|.|+. +... .+.+|.|.| ||-+++-... .+.|.+.=.=.=..|+|+.-.+.
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i----gfln~~~e~~--l~~y~~~~Divl~~D~t~~v~~~ 272 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI----GYLNDRVDEL--LEKYMDSYDIVLVQDETLEVANS 272 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE----EecccCHHHH--HHHHHHhCCEEEECCCCchHHHH
Confidence 11234 23 6899999996 2222 134677777 3333321111 12222222112345677766666
Q ss_pred HHhhc
Q 001230 1113 VRQQL 1117 (1118)
Q Consensus 1113 vL~~I 1117 (1118)
+|..|
T Consensus 273 il~~i 277 (277)
T TIGR01544 273 ILQKI 277 (277)
T ss_pred HHhhC
Confidence 66654
No 93
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=79.42 E-value=3.1 Score=45.66 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=56.3
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeee-eEEecCCCCCCCCCCCCCccccccccccCCC
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAG-RVISRGDDGDPFDGDERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~-RVySRDDC~~~~dGnER~~yvKDLSrVLGrd 1050 (1118)
+.+.||+.+||+++.+ .|.++|-|++...++..+++.+.-.+ +|.. .++..+++.. .+. +...+.+=++ .+|..
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~-~KP-~p~~~~~a~~-~~~~~ 218 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVPK-KKP-DPDIYNLAAE-TLGVD 218 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccCC-CCC-CHHHHHHHHH-HhCcC
Confidence 5789999999999975 69999999999999999998762111 2321 1334333211 111 0112223333 45655
Q ss_pred -CeEEEEeCCCCccc
Q 001230 1051 -SAVVIIDDSVRVWP 1064 (1118)
Q Consensus 1051 -srVVIVDDSp~VW~ 1064 (1118)
..+|+|+|++.-+.
T Consensus 219 p~~~l~IGDs~~Di~ 233 (286)
T PLN02779 219 PSRCVVVEDSVIGLQ 233 (286)
T ss_pred hHHEEEEeCCHHhHH
Confidence 78999999975443
No 94
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.03 E-value=4.9 Score=43.19 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=15.2
Q ss_pred CCCeEEEEeCCCceeecc
Q 001230 918 ARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 918 ~kKLTLVLDLDETLIHSs 935 (1118)
+.++.+++||||||++..
T Consensus 5 ~~~~lI~~DlDGTLL~~~ 22 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSH 22 (271)
T ss_pred CCCeEEEEeCccCCcCCC
Confidence 467789999999999864
No 95
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=78.68 E-value=4 Score=43.03 Aligned_cols=13 Identities=54% Similarity=0.825 Sum_probs=11.6
Q ss_pred EEEeCCCceeecc
Q 001230 923 LVLDLDHTLLNSA 935 (1118)
Q Consensus 923 LVLDLDETLIHSs 935 (1118)
+++||||||+...
T Consensus 2 i~~DlDGTLl~~~ 14 (256)
T TIGR00099 2 IFIDLDGTLLNDD 14 (256)
T ss_pred EEEeCCCCCCCCC
Confidence 7899999999874
No 96
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=78.40 E-value=3.4 Score=43.51 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=43.2
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEe
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1023 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVyS 1023 (1118)
+.++||+.+||+.+.+.+.++|-|++...|+.++++.|.-.. +|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEE
Confidence 578999999999998888999999999999999999987654 67665544
No 97
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=78.10 E-value=3.3 Score=48.13 Aligned_cols=82 Identities=10% Similarity=0.063 Sum_probs=56.5
Q ss_pred EEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCCC
Q 001230 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 1051 (1118)
Q Consensus 973 VKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrds 1051 (1118)
+.+.||+.++|+++. +.+.+.|.|++.+.|+..+++.++-.. +|.. +++.++... .+ .+..+.+-+.+ ++ .+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~-i~~~d~v~~--~~-kP~~~~~al~~-l~-~~ 401 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTE-TFSIEQINS--LN-KSDLVKSILNK-YD-IK 401 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcce-eEecCCCCC--CC-CcHHHHHHHHh-cC-cc
Confidence 567899999999996 569999999999999999999887554 6765 565443210 01 01123233322 22 26
Q ss_pred eEEEEeCCCC
Q 001230 1052 AVVIIDDSVR 1061 (1118)
Q Consensus 1052 rVVIVDDSp~ 1061 (1118)
.+|+|.|++.
T Consensus 402 ~~v~VGDs~~ 411 (459)
T PRK06698 402 EAAVVGDRLS 411 (459)
T ss_pred eEEEEeCCHH
Confidence 7999999973
No 98
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=77.62 E-value=3.8 Score=41.59 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=23.8
Q ss_pred cCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHh
Q 001230 977 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 1010 (1118)
Q Consensus 977 PGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiL 1010 (1118)
|.+.+.|+++.+. ..++|-|.....++..+++.+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 5566667777655 677777777777777777664
No 99
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=77.49 E-value=1.6 Score=44.42 Aligned_cols=87 Identities=25% Similarity=0.158 Sum_probs=50.8
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHH--HHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLY--ATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeY--Ad~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLG 1048 (1118)
.+.+.||+.+||++|.+ .|.++|.|++...+ +...+..++- ..+|.. ++..+++. ..+.+ +..|.+-++ .+|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~fd~-v~~s~~~~-~~KP~-p~~~~~~~~-~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALFDA-VVESCLEG-LRKPD-PRIYQLMLE-RLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhCCE-EEEeeecC-CCCCC-HHHHHHHHH-HcC
Confidence 36689999999999986 59999999987655 3222222221 135654 55433221 11211 112333333 456
Q ss_pred CC-CeEEEEeCCCCcc
Q 001230 1049 ME-SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1049 rd-srVVIVDDSp~VW 1063 (1118)
.. +.+|+|||+..-.
T Consensus 167 ~~~~~~l~i~D~~~di 182 (211)
T TIGR02247 167 VAPEECVFLDDLGSNL 182 (211)
T ss_pred CCHHHeEEEcCCHHHH
Confidence 55 7899999986433
No 100
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=77.36 E-value=7.4 Score=40.98 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=16.5
Q ss_pred CeEEEEeCCCceeecccCCCCCCch
Q 001230 920 KLCLVLDLDHTLLNSAKFHEVDPVH 944 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~~~eldP~~ 944 (1118)
.+.+++||||||+.... .+.|..
T Consensus 3 ~kli~~DlDGTLl~~~~--~i~~~~ 25 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TILPES 25 (272)
T ss_pred ccEEEEeCCCceECCCC--ccCHHH
Confidence 35889999999997753 344443
No 101
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=77.10 E-value=3.2 Score=43.16 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=35.1
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHh
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL 1010 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiL 1010 (1118)
+.+|||+.+||+.+.+ .+.++|.|++.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6899999999999975 5999999999999999999976
No 102
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=76.87 E-value=5.4 Score=42.22 Aligned_cols=16 Identities=31% Similarity=0.384 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 001230 920 KLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1118)
.+.+++||||||++..
T Consensus 3 ~kli~~DlDGTLl~~~ 18 (270)
T PRK10513 3 IKLIAIDMDGTLLLPD 18 (270)
T ss_pred eEEEEEecCCcCcCCC
Confidence 4678999999999874
No 103
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=76.46 E-value=3.7 Score=45.05 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=55.1
Q ss_pred EEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.+.||+.++|+.|. +.+.+.|.|++.+.++..+++.++-.. +|.. +++.++. .. .+..+.+=+. .++..
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~-vi~~~~~---~~--k~~~~~~~l~-~~~~~p 212 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSV-VQAGTPI---LS--KRRALSQLVA-REGWQP 212 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEE-EEecCCC---CC--CHHHHHHHHH-HhCcCh
Confidence 566899999999997 458999999999999999999987654 6764 5443221 00 0001212122 23444
Q ss_pred CeEEEEeCCCC
Q 001230 1051 SAVVIIDDSVR 1061 (1118)
Q Consensus 1051 srVVIVDDSp~ 1061 (1118)
+++|+|+|++.
T Consensus 213 ~~~l~IGDs~~ 223 (273)
T PRK13225 213 AAVMYVGDETR 223 (273)
T ss_pred hHEEEECCCHH
Confidence 78999999963
No 104
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=76.32 E-value=4.7 Score=42.86 Aligned_cols=114 Identities=20% Similarity=0.291 Sum_probs=72.9
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhc-ce
Q 001230 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FE 991 (1118)
Q Consensus 913 ~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKl-YE 991 (1118)
..|...+-..||||||+|||-=.. |. .-|-+.+.|..+.+. -.
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~-----~~-------------------------------~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDN-----PD-------------------------------ATPELRAWLAELKEAGIK 64 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccC-----CC-------------------------------CCHHHHHHHHHHHhcCCE
Confidence 356678999999999999994331 10 235567777777754 78
Q ss_pred EEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCC--CccccCCC
Q 001230 992 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV--RVWPHNKL 1068 (1118)
Q Consensus 992 IVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp--~VW~~Qpd 1068 (1118)
++|.++.++.-+..++..||-.- || + ....+. ..+-|-|. .++-+ +.||+|-|+- ++...|..
T Consensus 65 v~vvSNn~e~RV~~~~~~l~v~f------i~-~--A~KP~~----~~fr~Al~-~m~l~~~~vvmVGDqL~TDVlggnr~ 130 (175)
T COG2179 65 VVVVSNNKESRVARAAEKLGVPF------IY-R--AKKPFG----RAFRRALK-EMNLPPEEVVMVGDQLFTDVLGGNRA 130 (175)
T ss_pred EEEEeCCCHHHHHhhhhhcCCce------ee-c--ccCccH----HHHHHHHH-HcCCChhHEEEEcchhhhhhhccccc
Confidence 99999999998888888887542 22 2 111110 01123332 23444 7899999995 66665533
Q ss_pred --CeEEeccc
Q 001230 1069 --NLIVVERY 1076 (1118)
Q Consensus 1069 --NgIpIkpF 1076 (1118)
..|.|+|-
T Consensus 131 G~~tIlV~Pl 140 (175)
T COG2179 131 GMRTILVEPL 140 (175)
T ss_pred CcEEEEEEEe
Confidence 45777775
No 105
>PHA02597 30.2 hypothetical protein; Provisional
Probab=75.80 E-value=2.6 Score=42.56 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=51.9
Q ss_pred EEEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCC---ceeeeeEEecCCCCCCCCCCCCCccccccccccC
Q 001230 972 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKG---VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~g---kLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLG 1048 (1118)
.++..||+.++|++|.+.|.+++-|++.......+++.+.-.+ .+|.. +++-+++ .+. ...+.+-++ .+|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~-i~~~~~~----~~k-p~~~~~a~~-~~~ 144 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE-VLMCGHD----ESK-EKLFIKAKE-KYG 144 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE-EEEeccC----ccc-HHHHHHHHH-HhC
Confidence 3668999999999999888888888876665555666553322 14543 4443322 110 112222232 345
Q ss_pred CCCeEEEEeCCCCccc
Q 001230 1049 MESAVVIIDDSVRVWP 1064 (1118)
Q Consensus 1049 rdsrVVIVDDSp~VW~ 1064 (1118)
.+.+|+|||+..-..
T Consensus 145 -~~~~v~vgDs~~di~ 159 (197)
T PHA02597 145 -DRVVCFVDDLAHNLD 159 (197)
T ss_pred -CCcEEEeCCCHHHHH
Confidence 567999999985554
No 106
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=75.73 E-value=3.8 Score=44.00 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=56.3
Q ss_pred EEEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCC--CceeeeeEEecCCCCCCCCCCCCCccccccccccC
Q 001230 972 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK--GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 1048 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~--gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLG 1048 (1118)
...+.|++.++|+++. +.|.++|||++...+...+++..+-. ..+|.. +|... .+ .+. +...|.+=++ -+|
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~-~fd~~-~g--~KP-~p~~y~~i~~-~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSG-YFDTT-VG--LKT-EAQSYVKIAG-QLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcce-EEEeC-cc--cCC-CHHHHHHHHH-HhC
Confidence 4568999999999996 46999999999999999988875311 124554 33211 11 111 1123444444 356
Q ss_pred CC-CeEEEEeCCCCcc
Q 001230 1049 ME-SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1049 rd-srVVIVDDSp~VW 1063 (1118)
.. +.+++|+|+..-.
T Consensus 167 v~p~e~lfVgDs~~Di 182 (220)
T TIGR01691 167 SPPREILFLSDIINEL 182 (220)
T ss_pred cChhHEEEEeCCHHHH
Confidence 55 8899999997433
No 107
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=75.38 E-value=3.2 Score=40.94 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=51.3
Q ss_pred EEeccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-
Q 001230 973 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 1050 (1118)
Q Consensus 973 VKkRPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd- 1050 (1118)
+.+.||+.++|++|. ..+.+.|-|++. .+..+++.+.-.. +|.. ++..++-. ..+. .+..|.+-++ .++..
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~kp-~p~~~~~~~~-~~~~~~ 158 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDA-IVDPAEIK-KGKP-DPEIFLAAAE-GLGVSP 158 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcE-EEehhhcC-CCCC-ChHHHHHHHH-HcCCCH
Confidence 467899999999997 458999999764 4567787776543 6764 55433211 1111 1112333333 34555
Q ss_pred CeEEEEeCCCC
Q 001230 1051 SAVVIIDDSVR 1061 (1118)
Q Consensus 1051 srVVIVDDSp~ 1061 (1118)
+++|+|+|++.
T Consensus 159 ~~~v~vgD~~~ 169 (185)
T TIGR01990 159 SECIGIEDAQA 169 (185)
T ss_pred HHeEEEecCHH
Confidence 78999999963
No 108
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=75.25 E-value=5.7 Score=42.82 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=48.4
Q ss_pred cCCCeEEEEeCCCceeecccCC--------CCCC-chhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh
Q 001230 917 SARKLCLVLDLDHTLLNSAKFH--------EVDP-VHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 987 (1118)
Q Consensus 917 s~kKLTLVLDLDETLIHSs~~~--------eldP-~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS 987 (1118)
..+++.+||||||||+....+. ..++ ...+|+.. .. -..=|+..+|++.+.
T Consensus 69 ~~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~-----------------~~---~~aip~a~~l~~~~~ 128 (229)
T PF03767_consen 69 ADKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVAS-----------------GK---APAIPGALELYNYAR 128 (229)
T ss_dssp HTSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHC-----------------TG---GEEETTHHHHHHHHH
T ss_pred cCCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhc-----------------cc---CcccHHHHHHHHHHH
Confidence 3799999999999999654310 0000 01112110 11 144588999999987
Q ss_pred hc-ceEEEeccCcHHHHHHHHHHhcCCC
Q 001230 988 KL-FEMHLYTMGNKLYATEMAKVLDPKG 1014 (1118)
Q Consensus 988 Kl-YEIVIFTAGtKeYAd~VLdiLDP~g 1014 (1118)
+. ++|++-|.-....-..-++.|.-.|
T Consensus 129 ~~G~~V~~iT~R~~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 129 SRGVKVFFITGRPESQREATEKNLKKAG 156 (229)
T ss_dssp HTTEEEEEEEEEETTCHHHHHHHHHHHT
T ss_pred HCCCeEEEEecCCchhHHHHHHHHHHcC
Confidence 55 8999999877665555555554334
No 109
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=74.96 E-value=5.9 Score=42.06 Aligned_cols=33 Identities=21% Similarity=0.107 Sum_probs=23.0
Q ss_pred HHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhc
Q 001230 979 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 1011 (1118)
Q Consensus 979 LdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLD 1011 (1118)
..++|+++.+. +.++|-|.-....+..+++.++
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~ 54 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELG 54 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 45666666654 6777777777777777777765
No 110
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=73.98 E-value=8.2 Score=39.71 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
+.|++||||||+...
T Consensus 4 kli~~DlDGTLl~~~ 18 (230)
T PRK01158 4 KAIAIDIDGTITDKD 18 (230)
T ss_pred eEEEEecCCCcCCCC
Confidence 578999999999664
No 111
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=73.82 E-value=4.9 Score=44.06 Aligned_cols=164 Identities=14% Similarity=0.128 Sum_probs=89.8
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhh---hccccCCCcceee--e---eccceEEEEeccCHHHHHHHHh-hc
Q 001230 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKK---EEQDREKPHRHLF--R---FPHMGMWTKLRPGIWTFLERAS-KL 989 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~---EeqD~~~P~v~lF--~---l~~~~vyVKkRPGLdEFLeeLS-Kl 989 (1118)
....+|+|+|+|||-+...- ..+.+-.|...+ ...+........| . +....-+...=|.+-+|++.++ +.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~l-g~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPL-GSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCcccc-CCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 77889999999999776321 122222332211 0000000001111 0 1112345677899999999998 45
Q ss_pred ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCC------CCC-------CCCCC------CCCccccccccccCCC
Q 001230 990 FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGD------DGD-------PFDGD------ERVPKSKDLEGVLGME 1050 (1118)
Q Consensus 990 YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDD------C~~-------~~dGn------ER~~yvKDLSrVLGrd 1050 (1118)
.-++.+|+....|...-++.|=--|.-|..+.+..+. |+. +.+|. ....-++.+-..+|..
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~ 177 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQS 177 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCC
Confidence 9999999999999999998875445444443211100 110 11110 0111112221123444
Q ss_pred -CeEEEEeCCCCccc----cCCCCeEEeccccCCCCch
Q 001230 1051 -SAVVIIDDSVRVWP----HNKLNLIVVERYTYFPCSR 1083 (1118)
Q Consensus 1051 -srVVIVDDSp~VW~----~QpdNgIpIkpF~gFp~Dr 1083 (1118)
+.||+|||+.+.-. ......|..--|+|.+-..
T Consensus 178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~~~~ 215 (252)
T PF11019_consen 178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTGAEE 215 (252)
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcchhh
Confidence 89999999975432 2344778877787776553
No 112
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=73.54 E-value=6.6 Score=39.90 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=23.0
Q ss_pred eccCHHHHHHHHhh-cceEEEeccCcHHHHH
Q 001230 975 LRPGIWTFLERASK-LFEMHLYTMGNKLYAT 1004 (1118)
Q Consensus 975 kRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd 1004 (1118)
..|++.++++++.+ -|.+++.|.....-+.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~ 58 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQAD 58 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence 47999999999875 5777777777666554
No 113
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=73.03 E-value=12 Score=42.34 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=34.9
Q ss_pred ccCHHHHHHHHh-hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecC
Q 001230 976 RPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 1025 (1118)
Q Consensus 976 RPGLdEFLeeLS-KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRD 1025 (1118)
=|+..+|++++. .-+.|++-|.-....-..=++.|--.|-..-.+++-|.
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKD 197 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecC
Confidence 378889999985 57999999998877766667777656621223455553
No 114
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=71.99 E-value=1.3 Score=43.56 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=53.0
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-C
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-s 1051 (1118)
+..+||+.++|+. +.|.|++.+.|...+++.+.-.. +|.. +++.++.. ..+.+ +..|.+-++ .+|.. +
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~-~~KP~-p~~f~~~~~-~~~~~p~ 157 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDR-AFSVDTVR-AYKPD-PVVYELVFD-TVGLPPD 157 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhh-hccHhhcC-CCCCC-HHHHHHHHH-HHCCCHH
Confidence 5689999999994 78999999999999999876443 6764 66554322 12211 112344444 45665 8
Q ss_pred eEEEEeCCC
Q 001230 1052 AVVIIDDSV 1060 (1118)
Q Consensus 1052 rVVIVDDSp 1060 (1118)
.+|+|+|+.
T Consensus 158 ~~l~vgD~~ 166 (175)
T TIGR01493 158 RVLMVAAHQ 166 (175)
T ss_pred HeEeEecCh
Confidence 899999995
No 115
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=70.86 E-value=8.6 Score=39.33 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.4
Q ss_pred EEEeCCCceeecc
Q 001230 923 LVLDLDHTLLNSA 935 (1118)
Q Consensus 923 LVLDLDETLIHSs 935 (1118)
+++|||+||+.+.
T Consensus 1 i~~DlDGTLl~~~ 13 (225)
T TIGR01482 1 IASDIDGTLTDPN 13 (225)
T ss_pred CeEeccCccCCCC
Confidence 5899999999875
No 116
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=70.66 E-value=9.5 Score=40.72 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
+.+++||||||+...
T Consensus 3 kli~~DlDGTLl~~~ 17 (272)
T PRK15126 3 RLAAFDMDGTLLMPD 17 (272)
T ss_pred cEEEEeCCCcCcCCC
Confidence 478999999999765
No 117
>PLN02954 phosphoserine phosphatase
Probab=70.19 E-value=9 Score=39.38 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=40.0
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCC-ceeeeeE
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRV 1021 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~g-kLFs~RV 1021 (1118)
..++||+.+||+.+.+ .+.++|-|++.+.|+..+++.+.-.. .+|..++
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~ 133 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQI 133 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEE
Confidence 5688999999999965 58999999999999999999876432 3665544
No 118
>PRK10444 UMP phosphatase; Provisional
Probab=69.49 E-value=8.3 Score=41.88 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 001230 922 CLVLDLDHTLLNSA 935 (1118)
Q Consensus 922 TLVLDLDETLIHSs 935 (1118)
.+++||||||++..
T Consensus 3 ~v~~DlDGtL~~~~ 16 (248)
T PRK10444 3 NVICDIDGVLMHDN 16 (248)
T ss_pred EEEEeCCCceEeCC
Confidence 68999999999886
No 119
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=68.88 E-value=8.4 Score=44.44 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=38.2
Q ss_pred eEEEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHh-c
Q 001230 970 GMWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVL-D 1011 (1118)
Q Consensus 970 ~vyVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiL-D 1011 (1118)
.-||++-|++.++|+++.+ .+.+.|-|++...|++.+++.+ +
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 4689999999999999975 4899999999999999999997 5
No 120
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=67.96 E-value=17 Score=37.42 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=39.2
Q ss_pred hcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCc
Q 001230 988 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRV 1062 (1118)
Q Consensus 988 KlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~V 1062 (1118)
+.+.++|-|.....++..+++.+.-.. +|. ++. ... ..++.+-.-+|.. +.+++|-|+..=
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~--------g~~-~k~----~~l~~~~~~~gl~~~ev~~VGDs~~D 124 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQ--------GQS-NKL----IAFSDLLEKLAIAPEQVAYIGDDLID 124 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eec--------CCC-cHH----HHHHHHHHHhCCCHHHEEEECCCHHH
Confidence 679999999999999999999885332 332 111 000 1233333345665 789999988633
No 121
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=67.29 E-value=8 Score=42.21 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 001230 919 RKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs 935 (1118)
.++.|++||||||+...
T Consensus 13 ~~~li~~D~DGTLl~~~ 29 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIK 29 (266)
T ss_pred CCEEEEEecCCCCCCCC
Confidence 36889999999999764
No 122
>PRK10976 putative hydrolase; Provisional
Probab=67.06 E-value=13 Score=39.46 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=16.1
Q ss_pred eEEEEeCCCceeecccCCCCCCch
Q 001230 921 LCLVLDLDHTLLNSAKFHEVDPVH 944 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~~~eldP~~ 944 (1118)
+.+++||||||++... .+.+..
T Consensus 3 kli~~DlDGTLl~~~~--~is~~~ 24 (266)
T PRK10976 3 QVVASDLDGTLLSPDH--TLSPYA 24 (266)
T ss_pred eEEEEeCCCCCcCCCC--cCCHHH
Confidence 5789999999998753 344443
No 123
>PTZ00174 phosphomannomutase; Provisional
Probab=66.46 E-value=7 Score=41.72 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=19.6
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhh
Q 001230 919 RKLCLVLDLDHTLLNSAKFHEVDPVHDEIL 948 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs~~~eldP~~~EIl 948 (1118)
+.+.+++||||||+++.. .++|...+.+
T Consensus 4 ~~klia~DlDGTLL~~~~--~is~~~~~ai 31 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN--PITQEMKDTL 31 (247)
T ss_pred CCeEEEEECcCCCcCCCC--CCCHHHHHHH
Confidence 456899999999998864 3455443333
No 124
>PLN02645 phosphoglycolate phosphatase
Probab=66.18 E-value=10 Score=42.07 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=14.1
Q ss_pred CCeEEEEeCCCceeecc
Q 001230 919 RKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs 935 (1118)
+-..+++|+||||++..
T Consensus 27 ~~~~~~~D~DGtl~~~~ 43 (311)
T PLN02645 27 SVETFIFDCDGVIWKGD 43 (311)
T ss_pred hCCEEEEeCcCCeEeCC
Confidence 34589999999999875
No 125
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=65.03 E-value=9.1 Score=49.69 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=59.5
Q ss_pred eccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-Ce
Q 001230 975 LRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SA 1052 (1118)
Q Consensus 975 kRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-sr 1052 (1118)
+.||+.+||++|.+ .|.+.|.|++.+.+++.+++.+.-...+|.. +++.+++.. .+. ....|.+-++ .++.. ..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~-iv~~~~~~~-~KP-~Pe~~~~a~~-~lgv~p~e 237 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA-IVSADAFEN-LKP-APDIFLAAAK-ILGVPTSE 237 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE-EEECccccc-CCC-CHHHHHHHHH-HcCcCccc
Confidence 57999999999964 6999999999999999999987644346765 665554321 121 1113334443 45655 78
Q ss_pred EEEEeCCCCcc
Q 001230 1053 VVIIDDSVRVW 1063 (1118)
Q Consensus 1053 VVIVDDSp~VW 1063 (1118)
+|+|+|++.-.
T Consensus 238 ~v~IgDs~~Di 248 (1057)
T PLN02919 238 CVVIEDALAGV 248 (1057)
T ss_pred EEEEcCCHHHH
Confidence 99999997444
No 126
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=64.13 E-value=10 Score=41.06 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
..+++||||||++..
T Consensus 2 k~i~~D~DGtl~~~~ 16 (257)
T TIGR01458 2 KGVLLDISGVLYISD 16 (257)
T ss_pred CEEEEeCCCeEEeCC
Confidence 378999999999875
No 127
>PLN02811 hydrolase
Probab=63.07 E-value=8.3 Score=40.08 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=52.8
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHH-HHHHhcCCCceeeeeEEecC--CCCCCCCCCCCCccccccccccC
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATE-MAKVLDPKGVLFAGRVISRG--DDGDPFDGDERVPKSKDLEGVLG 1048 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~-VLdiLDP~gkLFs~RVySRD--DC~~~~dGnER~~yvKDLSrVLG 1048 (1118)
+.+.||+.+||+.|.+ .|.+.|-|++.+.+... +.+...-. .+|.. +++.+ ++.. .+. ....|.+=+.+ ++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~-i~~~~~~~~~~-~KP-~p~~~~~a~~~-~~ 151 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHH-VVTGDDPEVKQ-GKP-APDIFLAAARR-FE 151 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCE-EEECChhhccC-CCC-CcHHHHHHHHH-hC
Confidence 5678999999999975 69999999999876654 33222111 25654 56555 3321 111 11133444443 33
Q ss_pred ---CC-CeEEEEeCCCCcc
Q 001230 1049 ---ME-SAVVIIDDSVRVW 1063 (1118)
Q Consensus 1049 ---rd-srVVIVDDSp~VW 1063 (1118)
.. +.+|+|+|+..-.
T Consensus 152 ~~~~~~~~~v~IgDs~~di 170 (220)
T PLN02811 152 DGPVDPGKVLVFEDAPSGV 170 (220)
T ss_pred CCCCCccceEEEeccHhhH
Confidence 44 7899999997443
No 128
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=61.53 E-value=13 Score=37.55 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=41.4
Q ss_pred EEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcCCCceeeeeEE
Q 001230 973 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 1022 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVy 1022 (1118)
..++|++.++|+.+.+ .+.++|-|++...|+..+++.+.-.. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 4689999999999865 58999999999999999999987655 6666554
No 129
>PLN03017 trehalose-phosphatase
Probab=59.30 E-value=16 Score=42.75 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=43.1
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEE
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIV 993 (1118)
.....+++.|+||+||||+--.. +|.. ...-|.+.+-|++|.+.+.++
T Consensus 105 ~~~~~k~~llflD~DGTL~Piv~----~p~~----------------------------a~i~~~~~~aL~~La~~~~va 152 (366)
T PLN03017 105 EASRGKQIVMFLDYDGTLSPIVD----DPDK----------------------------AFMSSKMRRTVKKLAKCFPTA 152 (366)
T ss_pred HHhcCCCeEEEEecCCcCcCCcC----Cccc----------------------------ccCCHHHHHHHHHHhcCCcEE
Confidence 44667899999999999992221 1110 123366777788888888888
Q ss_pred EeccCcHHHHHHHHH
Q 001230 994 LYTMGNKLYATEMAK 1008 (1118)
Q Consensus 994 IFTAGtKeYAd~VLd 1008 (1118)
|-|--...-+..++.
T Consensus 153 IvSGR~~~~l~~~~~ 167 (366)
T PLN03017 153 IVTGRCIDKVYNFVK 167 (366)
T ss_pred EEeCCCHHHHHHhhc
Confidence 888777776666643
No 130
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=59.21 E-value=16 Score=38.42 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCCCCCccccCCcccccCCchhHHHHhhHHHHHhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhc
Q 001230 874 PVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEE 953 (1118)
Q Consensus 874 ~~~~~pq~~~~df~~L~~Gy~~~qra~i~ke~tkRL~eq~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~Ee 953 (1118)
+.-+.|+.+..+|.++--... .+...+=..||+|+|+||+.-..
T Consensus 14 p~l~~P~l~V~si~~I~~~~~-------------------~Lk~~Gik~li~DkDNTL~~~~~----------------- 57 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDIDFEAN-------------------HLKKKGIKALIFDKDNTLTPPYE----------------- 57 (168)
T ss_pred ccccCCCEEcCChhhCCcchh-------------------hhhhcCceEEEEcCCCCCCCCCc-----------------
Confidence 445677777777766532110 12346778999999999984431
Q ss_pred cccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcce---EEEeccC-------cHHHHHHHHHHhcCCCceeeeeEEe
Q 001230 954 QDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE---MHLYTMG-------NKLYATEMAKVLDPKGVLFAGRVIS 1023 (1118)
Q Consensus 954 qD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYE---IVIFTAG-------tKeYAd~VLdiLDP~gkLFs~RVyS 1023 (1118)
-..-|.+.+.|++|.+.|- |+|++++ ...-|..+-+.|.-. +|.|+
T Consensus 58 -------------------~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~h~--- 113 (168)
T PF09419_consen 58 -------------------DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP--VLRHR--- 113 (168)
T ss_pred -------------------CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc--EEEeC---
Confidence 1134567778888887763 8999998 366677888877522 22221
Q ss_pred cCCCCCCCCCCCCCccccccccccC------CCCeEEEEeCCC--CccccCCCC
Q 001230 1024 RGDDGDPFDGDERVPKSKDLEGVLG------MESAVVIIDDSV--RVWPHNKLN 1069 (1118)
Q Consensus 1024 RDDC~~~~dGnER~~yvKDLSrVLG------rdsrVVIVDDSp--~VW~~QpdN 1069 (1118)
+... + ..+++.+.|+ ..+.+++|.|+- +++..|.-+
T Consensus 114 ---~kKP--~-----~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 114 ---AKKP--G-----CFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred ---CCCC--c-----cHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 2111 1 1122323343 137899999995 666555433
No 131
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=58.16 E-value=6.9 Score=41.69 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=14.1
Q ss_pred CCeEEEEeCCCceeec
Q 001230 919 RKLCLVLDLDHTLLNS 934 (1118)
Q Consensus 919 kKLTLVLDLDETLIHS 934 (1118)
+|..|+||+||||+-.
T Consensus 2 ~~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEI 17 (244)
T ss_pred CcEEEEEecCccccCC
Confidence 6789999999999954
No 132
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=58.10 E-value=15 Score=39.00 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=12.8
Q ss_pred CeEEEEeCCCceeec
Q 001230 920 KLCLVLDLDHTLLNS 934 (1118)
Q Consensus 920 KLTLVLDLDETLIHS 934 (1118)
++.|+.||||||+..
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 468899999999963
No 133
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=57.90 E-value=18 Score=39.40 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=12.6
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
..+++||||||++..
T Consensus 3 ~~~~~D~DGtl~~~~ 17 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE 17 (279)
T ss_pred cEEEEeCCCceEcCC
Confidence 368899999998865
No 134
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=56.08 E-value=9.2 Score=41.72 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=18.3
Q ss_pred HHhhhcCCCeEEEEeCCCceeecc
Q 001230 912 QKKMFSARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 912 q~rLLs~kKLTLVLDLDETLIHSs 935 (1118)
|++ +.+.-+.+++|||||||.|.
T Consensus 17 ~~~-~~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 17 QHR-LGCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred HHH-hcCCceEEEEeCCCceeCCc
Confidence 444 45677779999999999995
No 135
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=54.44 E-value=22 Score=38.25 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=13.0
Q ss_pred EEEEeCCCceeeccc
Q 001230 922 CLVLDLDHTLLNSAK 936 (1118)
Q Consensus 922 TLVLDLDETLIHSs~ 936 (1118)
.+++||||||++...
T Consensus 3 ~~~~D~DGtl~~~~~ 17 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE 17 (249)
T ss_pred EEEEeCCCceEcCCe
Confidence 689999999998763
No 136
>PLN02423 phosphomannomutase
Probab=53.49 E-value=25 Score=37.92 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.6
Q ss_pred CCeEEEEeCCCceeecc
Q 001230 919 RKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs 935 (1118)
.|+.+++||||||+...
T Consensus 6 ~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 6 PGVIALFDVDGTLTAPR 22 (245)
T ss_pred cceEEEEeccCCCcCCC
Confidence 45566699999999775
No 137
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=53.03 E-value=26 Score=38.27 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=35.4
Q ss_pred EEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhc
Q 001230 973 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 1011 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLD 1011 (1118)
+++|||..+|.+++.+. -.++|-++|...|..+++..|-
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 88999999999999854 7899999999999999998764
No 138
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=52.77 E-value=29 Score=39.88 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
+.+++|||+||+...
T Consensus 2 KLIftDLDGTLLd~~ 16 (302)
T PRK12702 2 RLVLSSLDGSLLDLE 16 (302)
T ss_pred cEEEEeCCCCCcCCC
Confidence 578999999999865
No 139
>PLN02151 trehalose-phosphatase
Probab=52.56 E-value=25 Score=40.93 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=44.8
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEE
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIV 993 (1118)
.+...+++.|+||+||||+--.. +|. -+..-|.+.+-|++|++.+.++
T Consensus 92 ~~~~~~~~ll~lDyDGTL~PIv~----~P~----------------------------~A~~~~~~~~aL~~La~~~~va 139 (354)
T PLN02151 92 HKSEGKQIVMFLDYDGTLSPIVD----DPD----------------------------RAFMSKKMRNTVRKLAKCFPTA 139 (354)
T ss_pred HhhcCCceEEEEecCccCCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhcCCCEE
Confidence 34567899999999999993321 121 1335578888888888888888
Q ss_pred EeccCcHHHHHHHHH
Q 001230 994 LYTMGNKLYATEMAK 1008 (1118)
Q Consensus 994 IFTAGtKeYAd~VLd 1008 (1118)
|-|--...-...++.
T Consensus 140 IvSGR~~~~l~~~~~ 154 (354)
T PLN02151 140 IVSGRCREKVSSFVK 154 (354)
T ss_pred EEECCCHHHHHHHcC
Confidence 888777776666554
No 140
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.41 E-value=7.7 Score=46.93 Aligned_cols=130 Identities=19% Similarity=0.155 Sum_probs=67.4
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEecc---CHHHHHHHHhh-c
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRP---GIWTFLERASK-L 989 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRP---GLdEFLeeLSK-l 989 (1118)
-+....|++||||||+||.--..-. +- +.-+++... .-=+ -+++|...+.+ -
T Consensus 216 A~~g~~kK~LVLDLDNTLWGGVIGe--dG------------------v~GI~Ls~~----~~G~~fk~fQ~~Ik~l~kqG 271 (574)
T COG3882 216 AMSGKSKKALVLDLDNTLWGGVIGE--DG------------------VDGIRLSNS----AEGEAFKTFQNFIKGLKKQG 271 (574)
T ss_pred HhhCcccceEEEecCCccccccccc--cc------------------ccceeecCC----CCchhHHHHHHHHHHHHhcc
Confidence 3456789999999999999776310 00 011121100 0001 13455555543 4
Q ss_pred ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCC----CCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccc
Q 001230 990 FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDD----GDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWP 1064 (1118)
Q Consensus 990 YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC----~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~ 1064 (1118)
+=+.|.+..+..-|..|... +. |-|+..++- |+|-+. ...++-+.+-|+-. ..+|+|||+|.-..
T Consensus 272 VlLav~SKN~~~da~evF~k----hp---~MiLkeedfa~~~iNW~~K---~eNirkIAkklNlg~dSmvFiDD~p~ErE 341 (574)
T COG3882 272 VLLAVCSKNTEKDAKEVFRK----HP---DMILKEEDFAVFQINWDPK---AENIRKIAKKLNLGLDSMVFIDDNPAERE 341 (574)
T ss_pred EEEEEecCCchhhHHHHHhh----CC---CeEeeHhhhhhheecCCcc---hhhHHHHHHHhCCCccceEEecCCHHHHH
Confidence 55788888888888877763 21 224544321 223211 11122222234443 67889999985553
Q ss_pred cCCCCe-EEecccc
Q 001230 1065 HNKLNL-IVVERYT 1077 (1118)
Q Consensus 1065 ~QpdNg-IpIkpF~ 1077 (1118)
.-..++ |.|.+|-
T Consensus 342 ~vk~~~~v~Vi~~~ 355 (574)
T COG3882 342 LVKRELPVSVIEFP 355 (574)
T ss_pred HHHhcCceeeccCC
Confidence 222222 6666663
No 141
>PLN02887 hydrolase family protein
Probab=50.78 E-value=28 Score=42.79 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=17.1
Q ss_pred hhcCCCeEEEEeCCCceeecc
Q 001230 915 MFSARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 915 LLs~kKLTLVLDLDETLIHSs 935 (1118)
.+..+.+.+++||||||++..
T Consensus 303 ~~~~~iKLIa~DLDGTLLn~d 323 (580)
T PLN02887 303 FYKPKFSYIFCDMDGTLLNSK 323 (580)
T ss_pred hhccCccEEEEeCCCCCCCCC
Confidence 355677789999999999875
No 142
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=50.37 E-value=8.7 Score=39.09 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.0
Q ss_pred EEEEeCCCceeeccc
Q 001230 922 CLVLDLDHTLLNSAK 936 (1118)
Q Consensus 922 TLVLDLDETLIHSs~ 936 (1118)
.|++|||||||.|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999863
No 143
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=50.20 E-value=54 Score=35.16 Aligned_cols=108 Identities=21% Similarity=0.255 Sum_probs=63.5
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHh-hcceEEEeccC
Q 001230 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTMG 998 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLS-KlYEIVIFTAG 998 (1118)
.+.|+||.||||+--.. +....+ -...+.||+.+=|..+. ..|-++|+|+.
T Consensus 5 ~k~lflDRDGtin~d~~-----~yv~~~-----------------------~~~~~~~g~i~al~~l~~~gy~lVvvTNQ 56 (181)
T COG0241 5 QKALFLDRDGTINIDKG-----DYVDSL-----------------------DDFQFIPGVIPALLKLQRAGYKLVVVTNQ 56 (181)
T ss_pred CcEEEEcCCCceecCCC-----cccCcH-----------------------HHhccCccHHHHHHHHHhCCCeEEEEECC
Confidence 67999999999994431 010000 01457899999999985 56999999992
Q ss_pred ----c--------HHHHHHHHHHhcCCCceeeeeEEecC---CCCCCCCCCCCCccccccccc---cCCC-CeEEEEeCC
Q 001230 999 ----N--------KLYATEMAKVLDPKGVLFAGRVISRG---DDGDPFDGDERVPKSKDLEGV---LGME-SAVVIIDDS 1059 (1118)
Q Consensus 999 ----t--------KeYAd~VLdiLDP~gkLFs~RVySRD---DC~~~~dGnER~~yvKDLSrV---LGrd-srVVIVDDS 1059 (1118)
+ ..+-..++..|--.|.-|...+|..+ +-|.+.+ +..+=|..+ ++.+ .+.++|-|+
T Consensus 57 sGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRK-----P~~gm~~~~~~~~~iD~~~s~~VGD~ 131 (181)
T COG0241 57 SGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRK-----PKPGMLLSALKEYNIDLSRSYVVGDR 131 (181)
T ss_pred CCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccC-----CChHHHHHHHHHhCCCccceEEecCc
Confidence 2 23333466666666666777665433 1122222 222222212 2234 778888888
Q ss_pred C
Q 001230 1060 V 1060 (1118)
Q Consensus 1060 p 1060 (1118)
.
T Consensus 132 ~ 132 (181)
T COG0241 132 L 132 (181)
T ss_pred H
Confidence 5
No 144
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=50.18 E-value=9.1 Score=38.07 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.4
Q ss_pred CeEEEEeCCCceeeccc
Q 001230 920 KLCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~ 936 (1118)
-..+++|||||||.|..
T Consensus 5 ~~~viFD~DGTLiDs~~ 21 (188)
T PRK10725 5 YAGLIFDMDGTILDTEP 21 (188)
T ss_pred ceEEEEcCCCcCccCHH
Confidence 45789999999999863
No 145
>PRK11590 hypothetical protein; Provisional
Probab=50.15 E-value=9.2 Score=39.84 Aligned_cols=39 Identities=10% Similarity=-0.107 Sum_probs=34.1
Q ss_pred EEeccCHHHHH-HHHh-hcceEEEeccCcHHHHHHHHHHhc
Q 001230 973 TKLRPGIWTFL-ERAS-KLFEMHLYTMGNKLYATEMAKVLD 1011 (1118)
Q Consensus 973 VKkRPGLdEFL-eeLS-KlYEIVIFTAGtKeYAd~VLdiLD 1011 (1118)
+..+||+.+.| +.+. ..+.++|-|++...|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46699999999 5676 589999999999999999999865
No 146
>PHA02597 30.2 hypothetical protein; Provisional
Probab=49.63 E-value=9.6 Score=38.58 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
+.+++||||||+...
T Consensus 3 k~viFDlDGTLiD~~ 17 (197)
T PHA02597 3 PTILTDVDGVLLSWQ 17 (197)
T ss_pred cEEEEecCCceEchh
Confidence 579999999999965
No 147
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=49.41 E-value=31 Score=43.41 Aligned_cols=19 Identities=42% Similarity=0.385 Sum_probs=15.7
Q ss_pred cCCCeEEEEeCCCceeecc
Q 001230 917 SARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 917 s~kKLTLVLDLDETLIHSs 935 (1118)
..+++.+++|||+||++..
T Consensus 413 ~~~~KLIfsDLDGTLLd~d 431 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPL 431 (694)
T ss_pred CceeeEEEEECcCCCcCCC
Confidence 3567789999999999864
No 148
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=49.41 E-value=25 Score=39.49 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCCeEEEEeCCCceeecc
Q 001230 918 ARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 918 ~kKLTLVLDLDETLIHSs 935 (1118)
.+.-+..+|||+||++..
T Consensus 6 ~~y~~~l~DlDGvl~~G~ 23 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGN 23 (269)
T ss_pred hhcCEEEEcCcCceEeCC
Confidence 345678999999999886
No 149
>PRK11587 putative phosphatase; Provisional
Probab=48.36 E-value=9.4 Score=39.53 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.5
Q ss_pred CeEEEEeCCCceeeccc
Q 001230 920 KLCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~ 936 (1118)
...+++||||||+.|..
T Consensus 3 ~k~viFDlDGTL~Ds~~ 19 (218)
T PRK11587 3 CKGFLFDLDGTLVDSLP 19 (218)
T ss_pred CCEEEEcCCCCcCcCHH
Confidence 35799999999999963
No 150
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=48.03 E-value=22 Score=37.92 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=11.7
Q ss_pred EEEeCCCceeeccc
Q 001230 923 LVLDLDHTLLNSAK 936 (1118)
Q Consensus 923 LVLDLDETLIHSs~ 936 (1118)
++||+|+||+.+..
T Consensus 1 ~lfD~DGvL~~~~~ 14 (236)
T TIGR01460 1 FLFDIDGVLWLGHK 14 (236)
T ss_pred CEEeCcCccCcCCc
Confidence 47999999998863
No 151
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=47.58 E-value=47 Score=37.39 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=48.7
Q ss_pred HhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcce-
Q 001230 913 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE- 991 (1118)
Q Consensus 913 ~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYE- 991 (1118)
...+..+|..|+||.|+||++-..+ |.. +..=+++.+.|..|+..+.
T Consensus 11 ~~~~~a~~~~~~lDyDGTl~~i~~~----p~~----------------------------a~~~~~l~~lL~~Las~~~~ 58 (266)
T COG1877 11 EPYLNARKRLLFLDYDGTLTEIVPH----PEA----------------------------AVPDDRLLSLLQDLASDPRN 58 (266)
T ss_pred cccccccceEEEEeccccccccccC----ccc----------------------------cCCCHHHHHHHHHHHhcCCC
Confidence 3557789999999999999988753 211 2234678889999999998
Q ss_pred -EEEeccCcHHHHHHHHH
Q 001230 992 -MHLYTMGNKLYATEMAK 1008 (1118)
Q Consensus 992 -IVIFTAGtKeYAd~VLd 1008 (1118)
++|.|--.....+..+.
T Consensus 59 ~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 59 VVAIISGRSLAELERLFG 76 (266)
T ss_pred eEEEEeCCCHHHHHHhcC
Confidence 88888888876666665
No 152
>PLN02580 trehalose-phosphatase
Probab=47.50 E-value=26 Score=41.20 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=48.4
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhcceEE
Q 001230 914 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 993 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKlYEIV 993 (1118)
.+...+++.|+||.||||.--.. +|. -+..=|.+.+-|++|++.|-++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~----~Pd----------------------------~A~~s~~~~~aL~~La~~~~VA 160 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVD----DPD----------------------------RALMSDAMRSAVKNVAKYFPTA 160 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhhCCCEE
Confidence 44567899999999999984321 231 1335588999999999999999
Q ss_pred EeccCcHHHHHHHHH
Q 001230 994 LYTMGNKLYATEMAK 1008 (1118)
Q Consensus 994 IFTAGtKeYAd~VLd 1008 (1118)
|-|--...-.+..+.
T Consensus 161 IVSGR~~~~L~~~l~ 175 (384)
T PLN02580 161 IISGRSRDKVYELVG 175 (384)
T ss_pred EEeCCCHHHHHHHhC
Confidence 999988887776665
No 153
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=47.19 E-value=36 Score=36.44 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=41.9
Q ss_pred EEEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeE
Q 001230 972 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 1021 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RV 1021 (1118)
+++++||..++++.+... +.++|.|+|-..|+++|.+.|.-+. .+..++
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l 124 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANEL 124 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEE
Confidence 389999999999999865 9999999999999999999997665 444443
No 154
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=45.65 E-value=11 Score=38.54 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.5
Q ss_pred CeEEEEeCCCceeeccc
Q 001230 920 KLCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~ 936 (1118)
...+++||||||+++..
T Consensus 3 ~~~viFD~DGTL~ds~~ 19 (214)
T PRK13288 3 INTVLFDLDGTLINTNE 19 (214)
T ss_pred ccEEEEeCCCcCccCHH
Confidence 35789999999999973
No 155
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=45.61 E-value=11 Score=38.36 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeccc
Q 001230 921 LCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~ 936 (1118)
..+++||||||+.+..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 4789999999999863
No 156
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=45.14 E-value=13 Score=38.19 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.8
Q ss_pred eEEEEeCCCceeeccc
Q 001230 921 LCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~ 936 (1118)
.++++||||||+.+..
T Consensus 2 k~iiFD~DGTL~ds~~ 17 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDG 17 (220)
T ss_pred cEEEEecCCCeeccCc
Confidence 4789999999999863
No 157
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=44.68 E-value=11 Score=37.70 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.5
Q ss_pred EEEEeCCCceeecc
Q 001230 922 CLVLDLDHTLLNSA 935 (1118)
Q Consensus 922 TLVLDLDETLIHSs 935 (1118)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999885
No 158
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=41.29 E-value=13 Score=40.40 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.1
Q ss_pred CeEEEEeCCCceeecc
Q 001230 920 KLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1118)
.+.+++|||+||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3489999999999995
No 159
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=41.24 E-value=16 Score=37.04 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=12.7
Q ss_pred EEEEeCCCceeecc
Q 001230 922 CLVLDLDHTLLNSA 935 (1118)
Q Consensus 922 TLVLDLDETLIHSs 935 (1118)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999985
No 160
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=40.81 E-value=14 Score=34.97 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=12.4
Q ss_pred EEEeCCCceeeccc
Q 001230 923 LVLDLDHTLLNSAK 936 (1118)
Q Consensus 923 LVLDLDETLIHSs~ 936 (1118)
|++|||+||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999999873
No 161
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=40.73 E-value=14 Score=36.56 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=13.8
Q ss_pred eEEEEeCCCceeeccc
Q 001230 921 LCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~ 936 (1118)
..+++||||||+.+..
T Consensus 2 ~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP 17 (185)
T ss_pred CeEEEcCCCcccCChH
Confidence 4689999999999963
No 162
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=40.32 E-value=14 Score=38.87 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=13.7
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
..+++||||||+.|.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 489999999999996
No 163
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=39.59 E-value=63 Score=32.28 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=53.8
Q ss_pred EEEEeccCHHHHHHHHhhc-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCcccc---ccccc
Q 001230 971 MWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSK---DLEGV 1046 (1118)
Q Consensus 971 vyVKkRPGLdEFLeeLSKl-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvK---DLSrV 1046 (1118)
..-.+||++.++|++|.+. +.++|.|......|..+++.+.-. ...+|.+.. +. +.-| .+-+-
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~----~~~v~a~~~-~k--------P~~k~~~~~i~~ 190 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF----DSIVFARVI-GK--------PEPKIFLRIIKE 190 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC----SEEEEESHE-TT--------THHHHHHHHHHH
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc----ccccccccc-cc--------ccchhHHHHHHH
Confidence 3457899999999999986 899999999999999999998653 333444310 11 2222 22223
Q ss_pred cCCC-CeEEEEeCCC
Q 001230 1047 LGME-SAVVIIDDSV 1060 (1118)
Q Consensus 1047 LGrd-srVVIVDDSp 1060 (1118)
|+.. ..|++|-|..
T Consensus 191 l~~~~~~v~~vGDg~ 205 (215)
T PF00702_consen 191 LQVKPGEVAMVGDGV 205 (215)
T ss_dssp HTCTGGGEEEEESSG
T ss_pred HhcCCCEEEEEccCH
Confidence 4533 6899998875
No 164
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=38.80 E-value=50 Score=37.10 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=33.6
Q ss_pred EEeccCHHHHHHHHhhc--ceEEEeccCcHHHHHHHHHHhc
Q 001230 973 TKLRPGIWTFLERASKL--FEMHLYTMGNKLYATEMAKVLD 1011 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKl--YEIVIFTAGtKeYAd~VLdiLD 1011 (1118)
+-.-||+-+.++.+++. ||++|-+.+...+.+.+++..+
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~ 123 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAG 123 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHcc
Confidence 45679999988888753 8999999999999999999765
No 165
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=38.22 E-value=28 Score=36.87 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=48.9
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-C
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 1051 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-s 1051 (1118)
+..-||+.++|++|.+.|.++|.|++... ++.+.-. .+|.. +++-++.. ..+. .+..|.+-++ .+|.. +
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~-i~~~~~~~-~~KP-~p~~~~~a~~-~~~~~~~ 181 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEF-VLRAGPHG-RSKP-FSDMYHLAAE-KLNVPIG 181 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhce-eEecccCC-cCCC-cHHHHHHHHH-HcCCChh
Confidence 45559999999999988999999998865 2333222 36654 55433221 1111 1112333333 35655 7
Q ss_pred eEEEEeCCC--Cccc
Q 001230 1052 AVVIIDDSV--RVWP 1064 (1118)
Q Consensus 1052 rVVIVDDSp--~VW~ 1064 (1118)
.+|+|.|++ ++..
T Consensus 182 ~~~~VGD~~~~Di~~ 196 (238)
T PRK10748 182 EILHVGDDLTTDVAG 196 (238)
T ss_pred HEEEEcCCcHHHHHH
Confidence 899998884 4544
No 166
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=38.10 E-value=60 Score=39.42 Aligned_cols=41 Identities=24% Similarity=0.192 Sum_probs=36.6
Q ss_pred EEEeccCHHHHHHHHhh-cceEEEeccCcHHHHHHHHHHhcC
Q 001230 972 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDP 1012 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-lYEIVIFTAGtKeYAd~VLdiLDP 1012 (1118)
.-.+||++.++|++|.+ .+.++|-|...+.+|+.+++.+.-
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 35689999999999986 499999999999999999998854
No 167
>PRK11590 hypothetical protein; Provisional
Probab=37.44 E-value=43 Score=35.01 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCCeEEEEeCCCceeecc
Q 001230 918 ARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 918 ~kKLTLVLDLDETLIHSs 935 (1118)
..+..+++||||||++..
T Consensus 4 ~~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 4 HERRVVFFDLDGTLHQQD 21 (211)
T ss_pred ccceEEEEecCCCCcccc
Confidence 466799999999999554
No 168
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=37.35 E-value=16 Score=35.64 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 001230 922 CLVLDLDHTLLNSA 935 (1118)
Q Consensus 922 TLVLDLDETLIHSs 935 (1118)
.+++|||+|||.+.
T Consensus 1 ~vlFDlDgtLv~~~ 14 (183)
T TIGR01509 1 AILFDLDGVLVDTS 14 (183)
T ss_pred CeeeccCCceechH
Confidence 37999999999995
No 169
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=37.27 E-value=16 Score=38.98 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=14.0
Q ss_pred eEEEEeCCCceeeccc
Q 001230 921 LCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~ 936 (1118)
..+++||||||+.|..
T Consensus 23 k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP 38 (248)
T ss_pred CEEEEcCCCccCcCHH
Confidence 5799999999999873
No 170
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=37.22 E-value=19 Score=36.97 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=15.0
Q ss_pred CCCeEEEEeCCCceeecc
Q 001230 918 ARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 918 ~kKLTLVLDLDETLIHSs 935 (1118)
..++.+++|+||||+++.
T Consensus 12 ~~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 12 RSKKLVVFDMDSTLINAE 29 (219)
T ss_pred ccCCEEEEeCcccCCCch
Confidence 345689999999999975
No 171
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=37.16 E-value=15 Score=36.19 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=12.6
Q ss_pred EEEeCCCceeeccc
Q 001230 923 LVLDLDHTLLNSAK 936 (1118)
Q Consensus 923 LVLDLDETLIHSs~ 936 (1118)
+++|+|+||+.+..
T Consensus 2 iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 2 VIFDLDGVITDTAE 15 (185)
T ss_pred eEEcCCCccccChH
Confidence 79999999999873
No 172
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=37.11 E-value=21 Score=37.79 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
..+++|||||||.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 479999999999984
No 173
>PTZ00445 p36-lilke protein; Provisional
Probab=36.29 E-value=58 Score=36.09 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=49.7
Q ss_pred HHHHhHHHHHhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHH
Q 001230 904 ERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFL 983 (1118)
Q Consensus 904 e~tkRL~eq~rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFL 983 (1118)
+.++.++. .|...+=+.+++|||.|||-...- + |.... .| ...+.-..||.+..++
T Consensus 29 ~~~~~~v~--~L~~~GIk~Va~D~DnTlI~~Hsg-------G-~~~~~--~~------------~~~~~~~~tpefk~~~ 84 (219)
T PTZ00445 29 ESADKFVD--LLNECGIKVIASDFDLTMITKHSG-------G-YIDPD--ND------------DIRVLTSVTPDFKILG 84 (219)
T ss_pred HHHHHHHH--HHHHcCCeEEEecchhhhhhhhcc-------c-ccCCC--cc------------hhhhhccCCHHHHHHH
Confidence 44454443 355678899999999999853210 1 11100 00 0124567899999999
Q ss_pred HHHhh-cceEEEeccCcHHH
Q 001230 984 ERASK-LFEMHLYTMGNKLY 1002 (1118)
Q Consensus 984 eeLSK-lYEIVIFTAGtKeY 1002 (1118)
++|.+ .+.|+|-|-+.+.-
T Consensus 85 ~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 85 KRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHCCCeEEEEEccchhh
Confidence 99974 79999999988855
No 174
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=35.82 E-value=39 Score=33.39 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.6
Q ss_pred eccCHH----HHHHHH-hhcceEEEeccCcHHHHHHHHHHhcCCC-ceeeeeE
Q 001230 975 LRPGIW----TFLERA-SKLFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRV 1021 (1118)
Q Consensus 975 kRPGLd----EFLeeL-SKlYEIVIFTAGtKeYAd~VLdiLDP~g-kLFs~RV 1021 (1118)
++|++. +||+++ ...++++|-|++...|+..+++.+.-.. .++..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 456666 999997 5789999999999999999999776443 2444444
No 175
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=35.80 E-value=14 Score=37.62 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.3
Q ss_pred EEEeCCCceeeccc
Q 001230 923 LVLDLDHTLLNSAK 936 (1118)
Q Consensus 923 LVLDLDETLIHSs~ 936 (1118)
+|+||||||+.|..
T Consensus 1 iiFDlDGTL~Ds~~ 14 (205)
T TIGR01454 1 VVFDLDGVLVDSFA 14 (205)
T ss_pred CeecCcCccccCHH
Confidence 58999999999863
No 176
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=35.71 E-value=19 Score=36.64 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.8
Q ss_pred eEEEEeCCCceeeccc
Q 001230 921 LCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~ 936 (1118)
..+++|+||||+.+..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 4689999999999863
No 177
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=35.56 E-value=20 Score=37.06 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.7
Q ss_pred CCeEEEEeCCCceeecc
Q 001230 919 RKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs 935 (1118)
.-..+++|+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 45688999999999885
No 178
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=35.33 E-value=19 Score=36.43 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.8
Q ss_pred EEEEeCCCceeecc
Q 001230 922 CLVLDLDHTLLNSA 935 (1118)
Q Consensus 922 TLVLDLDETLIHSs 935 (1118)
.+++|||+|||.+.
T Consensus 3 ~viFD~dgTLiD~~ 16 (198)
T TIGR01428 3 ALVFDVYGTLFDVH 16 (198)
T ss_pred EEEEeCCCcCccHH
Confidence 68999999999876
No 179
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=35.06 E-value=23 Score=36.19 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.1
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
..+++|||+||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 379999999999874
No 180
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=34.84 E-value=71 Score=33.93 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=33.1
Q ss_pred EEeccCHHHHHH-HHh-hcceEEEeccCcHHHHHHHHHH
Q 001230 973 TKLRPGIWTFLE-RAS-KLFEMHLYTMGNKLYATEMAKV 1009 (1118)
Q Consensus 973 VKkRPGLdEFLe-eLS-KlYEIVIFTAGtKeYAd~VLdi 1009 (1118)
+.++|++.+.|+ .+. +-+.|+|-|++...|+.++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 777 5899999999999999999976
No 181
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=34.66 E-value=22 Score=35.48 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
..+|+|||+|||.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 479999999999864
No 182
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=34.53 E-value=15 Score=37.11 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=11.6
Q ss_pred EEEeCCCceeecc
Q 001230 923 LVLDLDHTLLNSA 935 (1118)
Q Consensus 923 LVLDLDETLIHSs 935 (1118)
+|+||||||+.|.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999876
No 183
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=34.15 E-value=23 Score=34.89 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=14.2
Q ss_pred CeEEEEeCCCceeecc
Q 001230 920 KLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1118)
|..+|+|+|+||+...
T Consensus 1 ~~~iiFD~dgTL~~~~ 16 (188)
T TIGR01489 1 KVVVVSDFDGTITLND 16 (188)
T ss_pred CeEEEEeCCCcccCCC
Confidence 6789999999999875
No 184
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=33.96 E-value=19 Score=39.67 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=14.3
Q ss_pred CeEEEEeCCCceeecc
Q 001230 920 KLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1118)
-..+++|||||||.|.
T Consensus 62 ~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 62 LQAIIFDFDGTLVDSL 77 (273)
T ss_pred cCEEEECCcCccccCH
Confidence 4589999999999996
No 185
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=33.70 E-value=20 Score=38.00 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 001230 921 LCLVLDLDHTLLNSA 935 (1118)
Q Consensus 921 LTLVLDLDETLIHSs 935 (1118)
..+++|||+||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 479999999999985
No 186
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=33.31 E-value=21 Score=36.34 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=13.8
Q ss_pred CeEEEEeCCCceeecc
Q 001230 920 KLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1118)
-..+++|+||||+++.
T Consensus 6 ~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 6 IRAVAFDLDGTLVDSA 21 (226)
T ss_pred CcEEEEcCCcccccCH
Confidence 3479999999999885
No 187
>PRK09449 dUMP phosphatase; Provisional
Probab=33.22 E-value=20 Score=36.87 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=12.3
Q ss_pred eEEEEeCCCceeec
Q 001230 921 LCLVLDLDHTLLNS 934 (1118)
Q Consensus 921 LTLVLDLDETLIHS 934 (1118)
..+++||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 47999999999973
No 188
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=31.73 E-value=59 Score=40.53 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=15.7
Q ss_pred hcCCCeEEEEeCCCceeec
Q 001230 916 FSARKLCLVLDLDHTLLNS 934 (1118)
Q Consensus 916 Ls~kKLTLVLDLDETLIHS 934 (1118)
...++..|++|+||||+-.
T Consensus 488 ~~~~~rLi~~D~DGTL~~~ 506 (726)
T PRK14501 488 RAASRRLLLLDYDGTLVPF 506 (726)
T ss_pred HhccceEEEEecCccccCC
Confidence 3467889999999999954
No 189
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=31.65 E-value=22 Score=35.10 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.9
Q ss_pred EEEeCCCceeecc
Q 001230 923 LVLDLDHTLLNSA 935 (1118)
Q Consensus 923 LVLDLDETLIHSs 935 (1118)
|++|||||||.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999886
No 190
>PLN02382 probable sucrose-phosphatase
Probab=30.28 E-value=27 Score=40.87 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.6
Q ss_pred hhhcCCCeEEEEeCCCceeec
Q 001230 914 KMFSARKLCLVLDLDHTLLNS 934 (1118)
Q Consensus 914 rLLs~kKLTLVLDLDETLIHS 934 (1118)
++-...++.||.||||||+..
T Consensus 3 ~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 3 RLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cccCCCCEEEEEcCCCcCcCC
Confidence 345678999999999999965
No 191
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=30.07 E-value=30 Score=38.16 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=14.7
Q ss_pred CCeEEEEeCCCceeecc
Q 001230 919 RKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs 935 (1118)
+-..+|+||||||+.+.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 34579999999999997
No 192
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=30.01 E-value=28 Score=36.83 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=13.6
Q ss_pred CeEEEEeCCCceeecc
Q 001230 920 KLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1118)
-+.+++||||||+.+.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 3579999999999964
No 193
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=29.34 E-value=27 Score=44.63 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=37.9
Q ss_pred cccchhHHhhhhHHHHHHHHHHhhcCCCCcchhHHHHHHHhhhheeeeeeeccChhhhhhhHHHHHHHHHHhhcCCCCCC
Q 001230 188 RGDISFEGVCSKLEFTLESLRELVNENNVPTKDALIQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLF 267 (1118)
Q Consensus 188 ~~~~sf~~~c~~l~~~l~~l~~~~~~~~~~~~d~lv~~~f~~~~~~~~v~~s~~~~~ke~nk~~~~rll~~~~~~~~~~~ 267 (1118)
..+.-|.=.|-.-+. .|.+++.+......-.+|+ -|++. +.-...+.||..|.+|+.+|-.|+-.+.
T Consensus 415 ~~elPftf~~P~s~e---el~~lL~~~~~~~~~~iI~----RIrk~------~hpsLa~~NK~Kl~~f~~vLlq~i~~la 481 (840)
T PF04147_consen 415 KSELPFTFPCPSSHE---ELLELLDGYSPEDQPTIIQ----RIRKC------YHPSLAEGNKEKLQVFFGVLLQHILYLA 481 (840)
T ss_pred ccCCCceecCCCCHH---HHHHHHhcCCHHHHhHHHH----HHHHh------CCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 555667777887554 4456887665433333333 34443 4445566777777666655544443333
Q ss_pred C
Q 001230 268 S 268 (1118)
Q Consensus 268 ~ 268 (1118)
+
T Consensus 482 ~ 482 (840)
T PF04147_consen 482 S 482 (840)
T ss_pred c
Confidence 3
No 194
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=27.81 E-value=90 Score=34.51 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=35.7
Q ss_pred EEeccCHHHHHHHHhh---cceEEEeccCcHHHHHHHHHHhcC
Q 001230 973 TKLRPGIWTFLERASK---LFEMHLYTMGNKLYATEMAKVLDP 1012 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSK---lYEIVIFTAGtKeYAd~VLdiLDP 1012 (1118)
+.+.||+.+||+.+.+ .|+++|-+.|...|-+.||+.-+-
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl 112 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGL 112 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCC
Confidence 7789999999999953 899999999999999999997544
No 195
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=27.45 E-value=2.5e+02 Score=29.45 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=63.5
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHH-HHHHHhhcceEEEeccC
Q 001230 920 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWT-FLERASKLFEMHLYTMG 998 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdE-FLeeLSKlYEIVIFTAG 998 (1118)
=+.+|+|.||+|---+.+ +++...++ .-+-.|-+.-- +|+ .+.+.+.|.|..
T Consensus 7 i~~~v~d~dGv~tdg~~~--~~~~g~~~-----------------------~~~~~~D~~~~~~L~--~~Gi~laIiT~k 59 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIV--INDEGIES-----------------------RNFDIKDGMGVIVLQ--LCGIDVAIITSK 59 (169)
T ss_pred CeEEEEeCceeeECCeEE--EcCCCcEE-----------------------EEEecchHHHHHHHH--HCCCEEEEEECC
Confidence 467999999999866532 11111000 11233444332 222 356999999999
Q ss_pred cHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCCC-CeEEEEeCCCCccccCCCCeEEecc
Q 001230 999 NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVER 1075 (1118)
Q Consensus 999 tKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGrd-srVVIVDDSp~VW~~QpdNgIpIkp 1075 (1118)
...++..+++.+.-.. +|.. + .. + . ..++.+-..++.. +.+++|.|+..=...-...++.+.+
T Consensus 60 ~~~~~~~~l~~lgi~~-~f~~-~--kp------k---p-~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am 123 (169)
T TIGR02726 60 KSGAVRHRAEELKIKR-FHEG-I--KK------K---T-EPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAV 123 (169)
T ss_pred CcHHHHHHHHHCCCcE-EEec-C--CC------C---H-HHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEEC
Confidence 9999999999986442 4432 1 10 0 0 0122222234544 7899999986333222233444444
No 196
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=27.41 E-value=1.2e+02 Score=32.20 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=25.9
Q ss_pred EEeccCHHHHHHHHhhcceEEEeccCcHHH
Q 001230 973 TKLRPGIWTFLERASKLFEMHLYTMGNKLY 1002 (1118)
Q Consensus 973 VKkRPGLdEFLeeLSKlYEIVIFTAGtKeY 1002 (1118)
...-||.++-+++|-+.|+|||-|++.--|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp 96 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP 96 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence 567799999999999999999999995443
No 197
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=26.79 E-value=1.4e+02 Score=35.58 Aligned_cols=126 Identities=20% Similarity=0.174 Sum_probs=63.7
Q ss_pred CCCCccccCCcccccCCchhHHHHhhHHHHHhHHHHH-hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccc
Q 001230 877 AHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQK-KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQD 955 (1118)
Q Consensus 877 ~~pq~~~~df~~L~~Gy~~~qra~i~ke~tkRL~eq~-rLLs~kKLTLVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD 955 (1118)
.-.|.++..|.+....-.. . ...+.+.+.. .-+...+..+|||||.|..-..-..+. ..+...+ ..+
T Consensus 102 Las~~t~sR~e~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~i~LDiD~T~~~~~G~Qe~----~~~n~y~-g~~ 169 (448)
T PF13701_consen 102 LASQPTLSRLENRPDERDL-----K--RLRRALVDLFLASYKKPPKEIVLDIDSTVDDVHGEQEG----AVFNTYY-GED 169 (448)
T ss_pred ccchhhHHHHHccccHHHH-----H--HHHHHHHHHHHHHhccccceEEEecccccccchhhccc----ccccccC-CCc
Confidence 4556777777766642221 1 1112222221 113456789999999997433321110 0010000 000
Q ss_pred cCCCcceeee-eccceEEEEeccC-------HHHHHHHHhhcc-----e-EEEeccCcHHHHHHHHHHhcCCCc
Q 001230 956 REKPHRHLFR-FPHMGMWTKLRPG-------IWTFLERASKLF-----E-MHLYTMGNKLYATEMAKVLDPKGV 1015 (1118)
Q Consensus 956 ~~~P~v~lF~-l~~~~vyVKkRPG-------LdEFLeeLSKlY-----E-IVIFTAGtKeYAd~VLdiLDP~gk 1015 (1118)
.-.| ...|. ..+.-+-+.+||| ..+||+++-+.+ + -+++=+-+-.|...+++.++-.+.
T Consensus 170 gY~P-L~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~ 242 (448)
T PF13701_consen 170 GYHP-LVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGV 242 (448)
T ss_pred cccc-ceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCC
Confidence 0011 11121 1233455789997 567877764333 2 345666666788889999887774
No 198
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=26.48 E-value=34 Score=35.26 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.8
Q ss_pred CeEEEEeCCCceeecc
Q 001230 920 KLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs 935 (1118)
-..+++||||||+-+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 4578999999999875
No 199
>PLN02954 phosphoserine phosphatase
Probab=24.85 E-value=40 Score=34.73 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.2
Q ss_pred CCCeEEEEeCCCceeeccc
Q 001230 918 ARKLCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 918 ~kKLTLVLDLDETLIHSs~ 936 (1118)
...+.+|+|+|+||+.+..
T Consensus 10 ~~~k~viFDfDGTL~~~~~ 28 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEG 28 (224)
T ss_pred ccCCEEEEeCCCcccchHH
Confidence 3467888999999998753
No 200
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=23.92 E-value=51 Score=38.82 Aligned_cols=20 Identities=5% Similarity=0.234 Sum_probs=17.1
Q ss_pred hcCCCeEEEEeCCCceeecc
Q 001230 916 FSARKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 916 Ls~kKLTLVLDLDETLIHSs 935 (1118)
+...-+.+|+|||||||.+.
T Consensus 127 ~~~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 127 MGCGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred ccCCCCEEEEcCcCcceeCH
Confidence 45677899999999999876
No 201
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=23.17 E-value=74 Score=36.87 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=59.3
Q ss_pred EEEEecc-CHHHHHHHHhh------cceEEEeccCcHHHHHHHHHHhcCCC-ceeeeeEEecCCCC--CCCCCCC--CCc
Q 001230 971 MWTKLRP-GIWTFLERASK------LFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRVISRGDDG--DPFDGDE--RVP 1038 (1118)
Q Consensus 971 vyVKkRP-GLdEFLeeLSK------lYEIVIFTAGtKeYAd~VLdiLDP~g-kLFs~RVySRDDC~--~~~dGnE--R~~ 1038 (1118)
+.++.|| +|..-|+.|.+ .|+|+|+-.|...-+..+++... .+ +++.+.-++...-. ..+.+-. ..+
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~h 84 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-DGVTHIQHPPISIKNVNPPHKFQGYYRIARH 84 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-cccEEEEcccccccccCcccccchhhHHHHH
Confidence 5688999 79999998875 48999999998776566665442 11 12322111100000 0000000 012
Q ss_pred cccccccccCC--CCeEEEEeCCCCcccc-------------CCCCeEEecccc
Q 001230 1039 KSKDLEGVLGM--ESAVVIIDDSVRVWPH-------------NKLNLIVVERYT 1077 (1118)
Q Consensus 1039 yvKDLSrVLGr--dsrVVIVDDSp~VW~~-------------QpdNgIpIkpF~ 1077 (1118)
|..-|+.++.. -..+|||||.-..-+. +-..+.-|..|.
T Consensus 85 yk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N 138 (334)
T cd02514 85 YKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN 138 (334)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 33356656654 3899999998654432 234677777775
No 202
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=23.15 E-value=37 Score=39.76 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=14.1
Q ss_pred eEEEEeCCCceeeccc
Q 001230 921 LCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 921 LTLVLDLDETLIHSs~ 936 (1118)
..+++|||||||.|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4799999999999874
No 203
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=22.27 E-value=1.1e+02 Score=36.90 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=51.8
Q ss_pred EEEeccCHHHHHHHHhh-c-ceEEEeccCcHHHHHHHHHHhcCCCceeeeeEEecCCCCCCCCCCCCCccccccccccCC
Q 001230 972 WTKLRPGIWTFLERASK-L-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 1049 (1118)
Q Consensus 972 yVKkRPGLdEFLeeLSK-l-YEIVIFTAGtKeYAd~VLdiLDP~gkLFs~RVySRDDC~~~~dGnER~~yvKDLSrVLGr 1049 (1118)
....|||+.+.|++|.+ . +.++|-|...+.+|..+++.++-+. +|.. +... ++...++.|.. .
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~~-~~p~----------~K~~~v~~l~~---~ 446 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHAE-LLPE----------DKLAIVKELQE---E 446 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eecc-CCHH----------HHHHHHHHHHH---c
Confidence 35699999999999976 4 8999999999999999999987643 3321 1110 01122333331 2
Q ss_pred CCeEEEEeCCCC
Q 001230 1050 ESAVVIIDDSVR 1061 (1118)
Q Consensus 1050 dsrVVIVDDSp~ 1061 (1118)
...+++|-|...
T Consensus 447 ~~~v~~vGDg~n 458 (556)
T TIGR01525 447 GGVVAMVGDGIN 458 (556)
T ss_pred CCEEEEEECChh
Confidence 258999999863
No 204
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=21.63 E-value=44 Score=35.38 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.7
Q ss_pred EEEeCCCceeec
Q 001230 923 LVLDLDHTLLNS 934 (1118)
Q Consensus 923 LVLDLDETLIHS 934 (1118)
.|+|||+|||..
T Consensus 4 a~FDlD~TLi~~ 15 (203)
T TIGR02137 4 ACLDLEGVLVPE 15 (203)
T ss_pred EEEeCCcccHHH
Confidence 799999999954
No 205
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.57 E-value=51 Score=33.65 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 001230 919 RKLCLVLDLDHTLLNSA 935 (1118)
Q Consensus 919 kKLTLVLDLDETLIHSs 935 (1118)
.-..+++|+|+||++..
T Consensus 3 ~~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 3 MIKAILFDLDGTLLDFD 19 (229)
T ss_pred ceeEEEEecCCcccccc
Confidence 34688999999999985
No 206
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=21.30 E-value=52 Score=35.72 Aligned_cols=14 Identities=43% Similarity=0.432 Sum_probs=12.3
Q ss_pred CCeEEEEeCCCcee
Q 001230 919 RKLCLVLDLDHTLL 932 (1118)
Q Consensus 919 kKLTLVLDLDETLI 932 (1118)
+++.||-|||+|||
T Consensus 1 ~~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 1 PPRLLASDLDGTLI 14 (247)
T ss_dssp -SEEEEEETBTTTB
T ss_pred CCEEEEEECCCCCc
Confidence 46889999999999
No 207
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=21.12 E-value=42 Score=35.23 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.4
Q ss_pred EEEeCCCceeecc
Q 001230 923 LVLDLDHTLLNSA 935 (1118)
Q Consensus 923 LVLDLDETLIHSs 935 (1118)
+++|||+||++..
T Consensus 2 i~~DlDgTLl~~~ 14 (236)
T TIGR02471 2 IITDLDNTLLGDD 14 (236)
T ss_pred eEEeccccccCCH
Confidence 7899999999864
No 208
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=20.95 E-value=36 Score=36.26 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhhcccchhHHhhhhHHHHHHHHHHhhcCCC--CcchhHHHHHHHhhhhe
Q 001230 175 NVESIREALESVLRGDISFEGVCSKLEFTLESLRELVNENN--VPTKDALIQLAFSAVQS 232 (1118)
Q Consensus 175 ~~~~ir~~le~v~~~~~sf~~~c~~l~~~l~~l~~~~~~~~--~~~~d~lv~~~f~~~~~ 232 (1118)
++..||+..+.+..+-+.--..=.+.+.+++.|.++|...- ...-|.|++++...++-
T Consensus 83 ~f~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ikl~~k~id~L~~~lr~~~~~ 142 (211)
T PF04546_consen 83 RFDEIRKLYEKLQKALKKHGRDSKKYQKLREELAEEFMEIKLSPKQIDRLVEQLREIVER 142 (211)
T ss_dssp HHHHHCCCHHHHCCCTTT--S-SHHHHHHHHHHHHHHTTCEE-HHHHHHHCHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence 44455555555553221111112345666677777887743 35667777776655443
No 209
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=20.90 E-value=1.6e+02 Score=31.15 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=39.2
Q ss_pred EEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeeeeccceEEEEeccCHHHHHHHHhhc-ceEEEeccCcHH
Q 001230 923 LVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNKL 1001 (1118)
Q Consensus 923 LVLDLDETLIHSs~~~eldP~~~EIl~k~EeqD~~~P~v~lF~l~~~~vyVKkRPGLdEFLeeLSKl-YEIVIFTAGtKe 1001 (1118)
+|-|+|+||--|... +.+. .+-+.. +.|||+.+|...+.+. |.|+--|+-.-.
T Consensus 2 VvsDIDGTiT~SD~~-------G~i~----------------~~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~ 55 (157)
T PF08235_consen 2 VVSDIDGTITKSDVL-------GHIL----------------PILGKD---WTHPGAAELYRKIADNGYKILYLTARPIG 55 (157)
T ss_pred EEEeccCCcCccchh-------hhhh----------------hccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHH
Confidence 688999999988521 1111 111112 6889999999988754 776666766555
Q ss_pred HHHHHHHHh
Q 001230 1002 YATEMAKVL 1010 (1118)
Q Consensus 1002 YAd~VLdiL 1010 (1118)
.|...-.+|
T Consensus 56 qa~~Tr~~L 64 (157)
T PF08235_consen 56 QANRTRSWL 64 (157)
T ss_pred HHHHHHHHH
Confidence 555555544
No 210
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=20.82 E-value=45 Score=35.42 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=19.2
Q ss_pred hcceEEEeccCcHHHHHHHHHHhcCCC
Q 001230 988 KLFEMHLYTMGNKLYATEMAKVLDPKG 1014 (1118)
Q Consensus 988 KlYEIVIFTAGtKeYAd~VLdiLDP~g 1014 (1118)
..+....-+......+..+++.|...+
T Consensus 76 ~~~~~~~~~~~~~pGv~~~l~~L~~~~ 102 (221)
T COG0637 76 EAEALELEGLKPIPGVVELLEQLKARG 102 (221)
T ss_pred HHHHhhhcCCCCCccHHHHHHHHHhcC
Confidence 344456666777788888888887766
No 211
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=20.22 E-value=53 Score=34.32 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.5
Q ss_pred CeEEEEeCCCceeeccc
Q 001230 920 KLCLVLDLDHTLLNSAK 936 (1118)
Q Consensus 920 KLTLVLDLDETLIHSs~ 936 (1118)
|.++++|+|+||+.+..
T Consensus 3 ~~~vifDfDgTi~~~d~ 19 (219)
T PRK09552 3 SIQIFCDFDGTITNNDN 19 (219)
T ss_pred CcEEEEcCCCCCCcchh
Confidence 56899999999998763
Done!