BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001234
         (1118 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
            OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
          Length = 1042

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1050 (51%), Positives = 729/1050 (69%), Gaps = 108/1050 (10%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECY 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E Y
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   ILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 121
                 ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESL
Sbjct: 75   -----DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESL 129

Query: 122  KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181
            KK +G+ KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AA
Sbjct: 130  KKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAA 189

Query: 182  ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKIL 241
            E+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K L
Sbjct: 190  EALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSL 249

Query: 242  QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 301
            QQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L
Sbjct: 250  QQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIAL 309

Query: 302  VSLLKREE---------------------------AVIEREASLQKKEQKLLVSQETLAS 334
                KREE                           AV ERE+SL KKEQ+LLV++E +AS
Sbjct: 310  ALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIAS 369

Query: 335  KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESL 394
            KES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ +
Sbjct: 370  KESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLV 429

Query: 395  LEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIK 454
             E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  + 
Sbjct: 430  GEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLD 489

Query: 455  SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 514
             +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D
Sbjct: 490  LELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEAD 549

Query: 515  KLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 574
            +L++EKAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK
Sbjct: 550  RLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHK 609

Query: 575  RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 634
             DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S
Sbjct: 610  NDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENS 669

Query: 635  FREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 694
             R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAE
Sbjct: 670  SRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAE 729

Query: 695  LNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLE 754
            L +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE
Sbjct: 730  LKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLE 789

Query: 755  HSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPS 807
             S +K+SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S
Sbjct: 790  RSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSS 839

Query: 808  LARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVI 867
               FSWIKR  +L+FK S E S                           + + + E    
Sbjct: 840  ATPFSWIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG- 872

Query: 868  LEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNN 927
              VPSE       + LES   +  A     S++ + + A RKRR +    + SE    NN
Sbjct: 873  --VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNN 922

Query: 928  KRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGG 987
            K+RK   D  +  S+EA     ++   N+PED+H L S +++  P G+            
Sbjct: 923  KKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------------ 967

Query: 988  NEEASILIVDKIIKISEVTCEMTDADNFIN 1017
                  +++ + +KI+ VTCE T+  N + 
Sbjct: 968  ------VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.325 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,303,439
Number of Sequences: 539616
Number of extensions: 15909479
Number of successful extensions: 143755
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 5451
Number of HSP's that attempted gapping in prelim test: 82126
Number of HSP's gapped (non-prelim): 28768
length of query: 1118
length of database: 191,569,459
effective HSP length: 128
effective length of query: 990
effective length of database: 122,498,611
effective search space: 121273624890
effective search space used: 121273624890
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)