Query 001234
Match_columns 1118
No_of_seqs 42 out of 44
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 19:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.4 7.9E-07 1.7E-11 107.0 65.4 147 131-284 252-401 (880)
2 KOG0161 Myosin class II heavy 99.3 2.7E-05 5.8E-10 101.2 78.1 498 218-730 964-1531(1930)
3 PRK02224 chromosome segregatio 99.2 4.7E-05 1E-09 92.1 72.1 93 114-210 148-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.1 0.00016 3.5E-09 92.0 78.3 77 132-208 396-472 (1311)
5 TIGR00606 rad50 rad50. This fa 99.1 0.00025 5.4E-09 90.4 73.3 77 175-252 576-652 (1311)
6 PRK03918 chromosome segregatio 98.9 0.00058 1.3E-08 82.5 72.4 41 217-257 244-284 (880)
7 TIGR02168 SMC_prok_B chromosom 98.8 0.0013 2.9E-08 80.1 78.0 10 813-822 1018-1027(1179)
8 TIGR02168 SMC_prok_B chromosom 98.7 0.0026 5.6E-08 77.7 82.0 29 683-711 993-1021(1179)
9 PRK03918 chromosome segregatio 98.7 0.0034 7.3E-08 76.1 67.0 15 20-34 32-46 (880)
10 KOG0161 Myosin class II heavy 98.5 0.014 3E-07 77.3 81.7 281 37-333 836-1135(1930)
11 PRK01156 chromosome segregatio 98.5 0.01 2.2E-07 72.8 66.2 49 684-732 682-730 (895)
12 PRK01156 chromosome segregatio 98.4 0.017 3.8E-07 70.9 73.5 58 658-715 670-727 (895)
13 PF12128 DUF3584: Protein of u 98.4 0.028 6.2E-07 71.9 68.4 207 484-694 594-810 (1201)
14 TIGR02169 SMC_prok_A chromosom 98.3 0.028 6.1E-07 69.3 79.9 16 25-40 120-135 (1164)
15 COG1196 Smc Chromosome segrega 98.3 0.039 8.4E-07 70.4 80.1 81 73-153 228-311 (1163)
16 TIGR02169 SMC_prok_A chromosom 98.3 0.031 6.7E-07 69.0 83.0 32 700-731 982-1013(1164)
17 KOG4674 Uncharacterized conser 97.9 0.24 5.3E-06 65.6 73.8 459 40-533 861-1382(1822)
18 KOG1029 Endocytic adaptor prot 97.9 0.019 4.1E-07 70.1 31.4 217 352-592 316-566 (1118)
19 COG1196 Smc Chromosome segrega 97.9 0.21 4.5E-06 64.1 78.5 230 24-287 121-367 (1163)
20 COG0419 SbcC ATPase involved i 97.8 0.23 4.9E-06 62.0 69.5 86 183-268 274-365 (908)
21 PF10174 Cast: RIM-binding pro 97.7 0.32 7E-06 60.5 63.8 322 301-634 182-533 (775)
22 PF07888 CALCOCO1: Calcium bin 97.7 0.26 5.6E-06 59.2 41.1 44 689-732 409-452 (546)
23 COG0419 SbcC ATPase involved i 97.6 0.4 8.6E-06 59.9 72.5 63 481-544 557-619 (908)
24 PF01576 Myosin_tail_1: Myosin 97.5 2.6E-05 5.6E-10 95.7 0.0 509 111-703 41-566 (859)
25 PF07888 CALCOCO1: Calcium bin 97.1 1.1 2.4E-05 54.0 41.3 96 493-592 353-448 (546)
26 KOG0250 DNA repair protein RAD 97.0 1.8 4E-05 55.4 33.7 107 447-553 357-464 (1074)
27 PF00261 Tropomyosin: Tropomyo 96.9 0.84 1.8E-05 48.9 26.3 178 232-422 57-234 (237)
28 PF00261 Tropomyosin: Tropomyo 96.8 0.58 1.3E-05 50.1 24.4 97 238-334 91-187 (237)
29 PF00038 Filament: Intermediat 96.4 2 4.4E-05 46.8 34.2 232 494-740 58-295 (312)
30 PRK11637 AmiB activator; Provi 96.4 1.4 3.1E-05 50.6 25.6 44 305-348 92-135 (428)
31 PRK12704 phosphodiesterase; Pr 96.4 0.15 3.2E-06 60.7 18.1 77 355-438 59-135 (520)
32 PRK11637 AmiB activator; Provi 96.4 2.9 6.2E-05 48.3 28.1 26 596-621 158-183 (428)
33 PF10174 Cast: RIM-binding pro 96.2 5.3 0.00011 50.3 59.6 181 135-338 133-316 (775)
34 KOG0964 Structural maintenance 96.2 6.3 0.00014 50.5 35.0 300 210-526 172-489 (1200)
35 KOG4674 Uncharacterized conser 96.2 8.7 0.00019 52.1 75.8 344 169-528 710-1098(1822)
36 KOG0933 Structural maintenance 96.0 7.4 0.00016 50.0 32.7 274 255-553 679-979 (1174)
37 TIGR03319 YmdA_YtgF conserved 96.0 0.31 6.8E-06 57.9 18.1 75 355-436 53-127 (514)
38 PF12128 DUF3584: Protein of u 95.9 8.8 0.00019 50.1 73.6 86 494-579 675-765 (1201)
39 PF08317 Spc7: Spc7 kinetochor 95.8 2 4.3E-05 48.2 22.5 166 402-573 127-292 (325)
40 PRK00106 hypothetical protein; 95.7 0.78 1.7E-05 55.1 20.1 74 356-436 75-148 (535)
41 PF01576 Myosin_tail_1: Myosin 95.4 0.0041 8.8E-08 77.0 0.0 244 44-298 201-446 (859)
42 KOG0018 Structural maintenance 95.3 14 0.0003 48.0 31.9 94 497-593 303-399 (1141)
43 PHA02562 46 endonuclease subun 95.2 8.8 0.00019 44.9 27.7 90 460-549 307-396 (562)
44 PRK12704 phosphodiesterase; Pr 95.2 0.28 6E-06 58.4 13.9 62 364-428 57-118 (520)
45 TIGR03319 YmdA_YtgF conserved 94.9 0.35 7.6E-06 57.5 13.8 70 364-436 51-120 (514)
46 PRK00106 hypothetical protein; 94.9 1.2 2.5E-05 53.7 18.1 12 901-912 476-487 (535)
47 KOG0977 Nuclear envelope prote 94.7 14 0.0003 45.1 29.6 302 144-504 81-384 (546)
48 PRK04863 mukB cell division pr 94.6 25 0.00053 47.5 43.1 146 132-282 232-398 (1486)
49 PHA02562 46 endonuclease subun 94.3 14 0.00031 43.3 33.9 99 439-544 307-405 (562)
50 PF12072 DUF3552: Domain of un 94.0 1.1 2.4E-05 47.2 13.7 70 361-430 61-130 (201)
51 PF05701 WEMBL: Weak chloropla 93.4 23 0.00049 42.7 48.0 147 428-592 282-428 (522)
52 KOG1029 Endocytic adaptor prot 92.6 38 0.00083 43.1 29.8 118 444-581 316-433 (1118)
53 KOG0996 Structural maintenance 92.5 47 0.001 43.9 41.7 136 451-586 475-612 (1293)
54 PF13851 GAS: Growth-arrest sp 92.5 17 0.00037 38.8 20.1 143 485-644 22-168 (201)
55 PF12072 DUF3552: Domain of un 91.8 4.7 0.0001 42.6 14.4 59 379-437 72-130 (201)
56 COG1340 Uncharacterized archae 91.3 32 0.00069 39.4 30.3 53 399-451 30-82 (294)
57 PF00038 Filament: Intermediat 90.7 30 0.00064 38.0 37.2 241 446-703 2-250 (312)
58 PRK12705 hypothetical protein; 90.0 17 0.00037 44.0 18.5 60 362-428 61-120 (508)
59 PF05557 MAD: Mitotic checkpoi 89.6 2.4 5.1E-05 52.1 11.4 67 262-329 259-325 (722)
60 TIGR03185 DNA_S_dndD DNA sulfu 89.3 63 0.0014 39.7 33.9 25 9-37 30-54 (650)
61 PF05667 DUF812: Protein of un 89.1 67 0.0015 39.8 24.9 216 259-494 320-544 (594)
62 KOG0612 Rho-associated, coiled 87.7 1.1E+02 0.0025 40.8 42.3 28 691-719 1016-1043(1317)
63 KOG0994 Extracellular matrix g 87.6 1.2E+02 0.0025 40.7 31.4 204 227-436 1520-1740(1758)
64 smart00787 Spc7 Spc7 kinetocho 85.9 71 0.0015 36.6 22.0 167 401-573 121-287 (312)
65 PF05557 MAD: Mitotic checkpoi 85.7 0.24 5.3E-06 60.4 0.0 32 496-527 398-429 (722)
66 PF08317 Spc7: Spc7 kinetochor 85.1 72 0.0016 36.2 18.7 33 498-530 231-263 (325)
67 KOG0250 DNA repair protein RAD 83.3 1.7E+02 0.0037 38.8 52.2 134 133-270 277-411 (1074)
68 PRK09039 hypothetical protein; 83.0 79 0.0017 36.4 18.1 114 121-238 65-178 (343)
69 PF12718 Tropomyosin_1: Tropom 82.3 63 0.0014 33.1 16.6 90 187-287 11-100 (143)
70 TIGR01005 eps_transp_fam exopo 81.5 1.2E+02 0.0027 37.6 20.2 72 152-223 184-263 (754)
71 KOG0612 Rho-associated, coiled 80.9 2.2E+02 0.0047 38.4 47.9 38 969-1007 1127-1164(1317)
72 PF09726 Macoilin: Transmembra 80.9 1.7E+02 0.0036 37.2 26.6 54 362-423 543-597 (697)
73 TIGR02680 conserved hypothetic 80.6 2.3E+02 0.0049 38.4 29.7 121 65-200 709-831 (1353)
74 PF13863 DUF4200: Domain of un 80.2 44 0.00096 32.2 12.9 89 369-467 12-100 (126)
75 PRK04863 mukB cell division pr 80.2 2.5E+02 0.0054 38.6 46.0 98 135-237 228-336 (1486)
76 TIGR03185 DNA_S_dndD DNA sulfu 79.9 1.6E+02 0.0035 36.3 36.3 47 663-709 422-468 (650)
77 PF10146 zf-C4H2: Zinc finger- 79.2 78 0.0017 35.0 15.7 77 633-717 4-80 (230)
78 PF05262 Borrelia_P83: Borreli 78.0 1.1E+02 0.0023 37.4 17.6 70 410-479 189-258 (489)
79 PF06818 Fez1: Fez1; InterPro 76.4 85 0.0018 34.4 14.8 130 449-600 32-170 (202)
80 PF09755 DUF2046: Uncharacteri 76.0 1.6E+02 0.0035 34.2 20.6 29 575-603 113-141 (310)
81 PLN03188 kinesin-12 family pro 75.0 92 0.002 41.8 16.9 151 116-292 1079-1250(1320)
82 PF00769 ERM: Ezrin/radixin/mo 74.0 1.1E+02 0.0023 33.9 15.1 79 448-526 12-90 (246)
83 COG1340 Uncharacterized archae 73.8 1.8E+02 0.0039 33.7 28.7 25 620-644 132-156 (294)
84 KOG0977 Nuclear envelope prote 73.7 2.4E+02 0.0052 35.1 35.5 275 358-690 90-377 (546)
85 TIGR03007 pepcterm_ChnLen poly 73.6 1.9E+02 0.0042 34.0 18.9 32 158-189 157-188 (498)
86 PRK09039 hypothetical protein; 73.4 1.8E+02 0.0039 33.6 20.2 51 470-520 117-167 (343)
87 PF09755 DUF2046: Uncharacteri 73.2 1.9E+02 0.0041 33.7 24.1 162 509-677 32-200 (310)
88 PF05622 HOOK: HOOK protein; 73.1 1.1 2.4E-05 54.8 0.0 154 197-364 193-357 (713)
89 PF10473 CENP-F_leu_zip: Leuci 72.6 1.3E+02 0.0027 31.4 18.3 88 473-560 7-94 (140)
90 PF04111 APG6: Autophagy prote 70.3 67 0.0014 36.6 12.9 16 690-705 166-181 (314)
91 PF05483 SCP-1: Synaptonemal c 69.5 3.3E+02 0.0071 34.9 68.0 324 198-543 216-566 (786)
92 PF11559 ADIP: Afadin- and alp 69.4 1.3E+02 0.0028 30.3 14.5 76 401-479 71-146 (151)
93 PRK12705 hypothetical protein; 68.7 2.9E+02 0.0063 34.0 19.9 60 355-418 65-124 (508)
94 PF04111 APG6: Autophagy prote 67.0 80 0.0017 36.0 12.7 34 484-517 100-133 (314)
95 KOG0804 Cytoplasmic Zn-finger 65.6 1.7E+02 0.0036 35.8 15.1 109 497-628 347-455 (493)
96 PF10186 Atg14: UV radiation r 64.4 2.1E+02 0.0045 30.8 16.5 90 256-345 66-155 (302)
97 KOG0976 Rho/Rac1-interacting s 63.9 4.5E+02 0.0098 34.5 45.3 370 309-730 92-471 (1265)
98 PF00769 ERM: Ezrin/radixin/mo 63.7 1.7E+02 0.0038 32.3 14.1 121 167-287 3-123 (246)
99 KOG4643 Uncharacterized coiled 62.6 5.1E+02 0.011 34.7 48.1 131 401-531 413-550 (1195)
100 COG4026 Uncharacterized protei 62.4 73 0.0016 35.7 10.8 83 485-571 118-205 (290)
101 PF12126 DUF3583: Protein of u 62.0 2.4E+02 0.0053 32.8 15.0 121 453-584 4-124 (324)
102 COG4942 Membrane-bound metallo 61.9 3.6E+02 0.0078 32.7 29.4 75 449-526 172-246 (420)
103 PF10146 zf-C4H2: Zinc finger- 60.8 2E+02 0.0042 32.0 13.8 95 478-572 3-103 (230)
104 COG1579 Zn-ribbon protein, pos 60.5 2.9E+02 0.0062 31.1 20.4 68 344-415 15-82 (239)
105 COG2433 Uncharacterized conser 58.8 1.4E+02 0.003 37.5 13.3 71 471-545 424-494 (652)
106 KOG3200 Uncharacterized conser 56.1 24 0.00051 38.2 5.7 21 813-833 69-89 (224)
107 PF10212 TTKRSYEDQ: Predicted 56.0 2.5E+02 0.0053 34.8 14.6 112 198-315 403-514 (518)
108 PRK10698 phage shock protein P 53.8 3.3E+02 0.0072 29.8 14.7 133 26-187 2-138 (222)
109 TIGR01000 bacteriocin_acc bact 52.5 2E+02 0.0044 33.9 13.1 220 3-235 64-315 (457)
110 COG1579 Zn-ribbon protein, pos 51.1 4.1E+02 0.0088 30.0 22.8 90 510-603 95-184 (239)
111 PF05701 WEMBL: Weak chloropla 50.6 5.5E+02 0.012 31.4 48.7 111 212-332 124-234 (522)
112 PF05262 Borrelia_P83: Borreli 50.6 4.9E+02 0.011 32.1 16.0 14 311-324 194-207 (489)
113 PRK04778 septation ring format 48.5 6E+02 0.013 31.2 43.7 411 216-732 89-521 (569)
114 KOG0946 ER-Golgi vesicle-tethe 48.2 7.9E+02 0.017 32.5 26.8 75 265-347 679-753 (970)
115 PF03904 DUF334: Domain of unk 47.9 4.6E+02 0.0099 29.6 14.7 111 497-613 43-154 (230)
116 TIGR01843 type_I_hlyD type I s 47.8 4.5E+02 0.0098 29.6 19.2 47 206-252 132-178 (423)
117 PRK00409 recombination and DNA 47.0 4.4E+02 0.0094 33.9 15.5 105 261-365 489-593 (782)
118 PF14662 CCDC155: Coiled-coil 47.0 4.3E+02 0.0094 29.1 23.2 172 433-624 17-188 (193)
119 PRK10246 exonuclease subunit S 46.5 8.4E+02 0.018 32.3 72.6 148 112-259 164-331 (1047)
120 TIGR01005 eps_transp_fam exopo 44.9 7.3E+02 0.016 31.1 18.5 63 114-183 199-265 (754)
121 PF09789 DUF2353: Uncharacteri 44.6 5.8E+02 0.013 29.9 23.1 206 441-662 2-228 (319)
122 PRK06800 fliH flagellar assemb 44.5 70 0.0015 35.0 7.1 50 681-730 36-85 (228)
123 TIGR03017 EpsF chain length de 44.5 5.6E+02 0.012 29.7 19.5 125 151-276 160-298 (444)
124 PF10473 CENP-F_leu_zip: Leuci 44.3 3.9E+02 0.0085 27.9 16.7 100 237-336 1-100 (140)
125 PF08614 ATG16: Autophagy prot 43.7 2.5E+02 0.0053 29.7 10.9 77 221-297 70-146 (194)
126 PF12329 TMF_DNA_bd: TATA elem 43.6 2.2E+02 0.0047 26.5 9.2 67 457-533 3-69 (74)
127 PF07926 TPR_MLP1_2: TPR/MLP1/ 43.2 3.6E+02 0.0077 27.0 16.9 96 448-546 17-112 (132)
128 PF03962 Mnd1: Mnd1 family; I 43.1 3.8E+02 0.0082 28.7 12.2 34 454-487 68-101 (188)
129 PTZ00266 NIMA-related protein 42.7 2.6E+02 0.0056 37.2 12.9 37 53-90 66-106 (1021)
130 PF11932 DUF3450: Protein of u 42.7 4.9E+02 0.011 28.5 13.5 56 507-562 59-114 (251)
131 PF03962 Mnd1: Mnd1 family; I 42.2 3.8E+02 0.0083 28.7 12.1 94 493-587 72-165 (188)
132 TIGR02977 phageshock_pspA phag 42.2 4.7E+02 0.01 28.2 14.5 130 26-184 2-135 (219)
133 PF15066 CAGE1: Cancer-associa 41.4 7.9E+02 0.017 30.5 21.6 85 481-569 406-490 (527)
134 PF07106 TBPIP: Tat binding pr 40.8 2.8E+02 0.0061 28.5 10.6 32 448-479 72-103 (169)
135 PF14988 DUF4515: Domain of un 40.7 5.2E+02 0.011 28.2 14.7 111 586-696 7-127 (206)
136 PF04871 Uso1_p115_C: Uso1 / p 40.7 4.2E+02 0.0091 27.2 14.3 37 477-513 78-114 (136)
137 TIGR02680 conserved hypothetic 40.1 1.2E+03 0.025 32.1 28.4 59 618-676 1085-1145(1353)
138 KOG1103 Predicted coiled-coil 40.1 7.4E+02 0.016 29.8 15.8 28 823-850 420-448 (561)
139 KOG0804 Cytoplasmic Zn-finger 39.8 7.1E+02 0.015 30.7 14.7 75 394-471 373-447 (493)
140 KOG0018 Structural maintenance 39.6 1.1E+03 0.025 31.9 57.0 221 497-737 652-901 (1141)
141 PF02841 GBP_C: Guanylate-bind 39.2 6E+02 0.013 28.5 15.5 9 131-139 41-49 (297)
142 PF09787 Golgin_A5: Golgin sub 38.1 8.2E+02 0.018 29.8 28.6 18 673-690 410-427 (511)
143 PF10186 Atg14: UV radiation r 38.0 5.4E+02 0.012 27.7 16.7 14 495-508 138-151 (302)
144 TIGR01069 mutS2 MutS2 family p 37.0 6.1E+02 0.013 32.7 14.6 33 145-177 136-168 (771)
145 PRK15422 septal ring assembly 35.7 2.3E+02 0.0051 27.3 8.2 55 470-524 12-66 (79)
146 TIGR01069 mutS2 MutS2 family p 35.6 8.1E+02 0.018 31.6 15.4 100 260-359 483-582 (771)
147 PF06476 DUF1090: Protein of u 35.5 1.3E+02 0.0028 30.2 6.9 43 132-174 45-89 (115)
148 KOG0995 Centromere-associated 35.5 1E+03 0.022 30.1 40.8 27 442-468 260-286 (581)
149 PRK00409 recombination and DNA 35.3 5.4E+02 0.012 33.1 13.8 35 146-180 142-176 (782)
150 KOG1962 B-cell receptor-associ 35.0 2.8E+02 0.006 30.9 9.9 57 509-576 156-212 (216)
151 KOG4661 Hsp27-ERE-TATA-binding 35.0 4.9E+02 0.011 33.0 12.6 20 590-609 681-700 (940)
152 PF09728 Taxilin: Myosin-like 34.4 7.8E+02 0.017 28.4 36.5 65 648-712 230-308 (309)
153 PTZ00266 NIMA-related protein 33.3 4.3E+02 0.0094 35.2 12.7 12 722-733 528-539 (1021)
154 PF09789 DUF2353: Uncharacteri 32.7 8.8E+02 0.019 28.5 26.1 40 698-737 190-229 (319)
155 COG4372 Uncharacterized protei 32.2 1E+03 0.022 29.1 23.0 41 291-331 234-274 (499)
156 KOG1853 LIS1-interacting prote 32.1 8.6E+02 0.019 28.2 15.6 82 195-283 50-131 (333)
157 PRK11519 tyrosine kinase; Prov 32.0 1.1E+03 0.023 30.0 15.4 44 151-194 256-299 (719)
158 PF02841 GBP_C: Guanylate-bind 31.6 7.9E+02 0.017 27.6 13.8 8 429-436 199-206 (297)
159 PF06428 Sec2p: GDP/GTP exchan 31.0 1.2E+02 0.0025 30.0 5.7 69 124-195 2-70 (100)
160 COG1842 PspA Phage shock prote 30.7 7.9E+02 0.017 27.3 12.7 106 135-253 29-134 (225)
161 COG1842 PspA Phage shock prote 30.0 8.1E+02 0.018 27.3 14.9 77 26-128 2-82 (225)
162 KOG1003 Actin filament-coating 29.9 8.2E+02 0.018 27.3 22.4 120 312-465 84-203 (205)
163 PF09744 Jnk-SapK_ap_N: JNK_SA 29.8 7E+02 0.015 26.5 12.6 71 387-463 80-157 (158)
164 PRK15422 septal ring assembly 29.7 5.3E+02 0.011 25.0 9.5 58 488-549 6-63 (79)
165 KOG3859 Septins (P-loop GTPase 29.5 5E+02 0.011 30.7 11.0 52 401-455 350-401 (406)
166 KOG0980 Actin-binding protein 28.8 1.6E+03 0.034 30.2 27.5 236 121-364 349-603 (980)
167 PRK11281 hypothetical protein; 28.5 1.7E+03 0.036 30.4 27.4 122 223-344 126-262 (1113)
168 PF11802 CENP-K: Centromere-as 28.4 7.4E+02 0.016 28.6 12.0 98 48-149 34-143 (268)
169 PF11068 YlqD: YlqD protein; 28.3 6.3E+02 0.014 26.1 10.5 73 646-734 18-90 (131)
170 PRK10884 SH3 domain-containing 28.2 6.1E+02 0.013 27.8 11.0 22 495-516 144-165 (206)
171 PF10234 Cluap1: Clusterin-ass 28.0 4.9E+02 0.011 29.8 10.6 95 419-516 157-258 (267)
172 smart00806 AIP3 Actin interact 27.6 1.2E+03 0.026 28.5 15.8 126 137-264 155-307 (426)
173 smart00502 BBC B-Box C-termina 27.3 5.1E+02 0.011 24.0 11.4 38 596-633 49-86 (127)
174 PRK09841 cryptic autophosphory 27.3 1.4E+03 0.03 29.1 17.1 34 291-324 352-385 (726)
175 PF04012 PspA_IM30: PspA/IM30 27.2 7.8E+02 0.017 26.2 17.1 74 27-126 2-79 (221)
176 cd07647 F-BAR_PSTPIP The F-BAR 27.1 8.4E+02 0.018 26.5 18.2 48 565-613 168-215 (239)
177 KOG2891 Surface glycoprotein [ 26.9 1.1E+03 0.024 27.8 13.8 92 257-354 345-438 (445)
178 TIGR01010 BexC_CtrB_KpsE polys 26.7 7.7E+02 0.017 28.1 12.1 55 232-292 249-303 (362)
179 PF04156 IncA: IncA protein; 26.2 7.4E+02 0.016 25.6 15.1 27 483-509 95-121 (191)
180 KOG0994 Extracellular matrix g 25.2 2E+03 0.044 30.3 34.8 156 243-425 1595-1750(1758)
181 PF14992 TMCO5: TMCO5 family 25.0 1.1E+03 0.025 27.3 13.7 64 358-422 37-100 (280)
182 PF04880 NUDE_C: NUDE protein, 24.6 90 0.002 33.2 4.0 17 501-517 28-44 (166)
183 PF15254 CCDC14: Coiled-coil d 24.6 1.4E+03 0.031 30.1 14.5 96 519-621 442-537 (861)
184 KOG0962 DNA repair protein RAD 24.2 2.1E+03 0.045 30.1 70.6 136 608-756 992-1129(1294)
185 cd07672 F-BAR_PSTPIP2 The F-BA 23.7 1E+03 0.022 26.4 20.1 112 495-613 105-216 (240)
186 KOG0249 LAR-interacting protei 23.0 1.8E+03 0.04 29.1 16.6 62 369-430 96-159 (916)
187 PRK10884 SH3 domain-containing 22.9 5.9E+02 0.013 27.9 9.8 53 246-298 118-170 (206)
188 KOG4657 Uncharacterized conser 22.7 1.2E+03 0.026 26.7 12.8 71 263-333 47-117 (246)
189 KOG2350 Zn-finger protein join 22.6 1.1E+02 0.0023 33.8 4.1 50 803-859 55-110 (221)
190 PF10498 IFT57: Intra-flagella 21.7 1.2E+03 0.027 27.5 12.7 135 338-475 198-337 (359)
191 PF05529 Bap31: B-cell recepto 21.6 5.2E+02 0.011 27.1 8.8 35 493-527 157-191 (192)
192 TIGR03545 conserved hypothetic 21.5 5.9E+02 0.013 31.7 10.4 90 386-477 165-262 (555)
193 PF09730 BicD: Microtubule-ass 21.1 1.9E+03 0.041 28.6 17.2 61 511-579 121-181 (717)
194 COG3074 Uncharacterized protei 21.1 7.5E+02 0.016 23.8 9.4 64 489-574 7-70 (79)
195 PF06818 Fez1: Fez1; InterPro 20.9 1.2E+03 0.026 26.0 15.7 30 494-526 135-164 (202)
196 KOG0995 Centromere-associated 20.8 1.8E+03 0.039 28.1 42.6 37 493-529 342-378 (581)
197 TIGR03007 pepcterm_ChnLen poly 20.5 1.5E+03 0.032 26.9 19.3 64 121-187 166-229 (498)
198 PF10498 IFT57: Intra-flagella 20.4 9.8E+02 0.021 28.3 11.5 99 157-286 222-320 (359)
199 PF06103 DUF948: Bacterial pro 20.4 3.4E+02 0.0073 25.2 6.5 53 129-181 25-77 (90)
200 PF12240 Angiomotin_C: Angiomo 20.2 1.2E+03 0.027 26.0 13.1 161 82-275 1-165 (205)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.44 E-value=7.9e-07 Score=107.04 Aligned_cols=147 Identities=15% Similarity=0.202 Sum_probs=60.0
Q ss_pred HHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001234 131 CIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 207 (1118)
Q Consensus 131 CVadLEKAL~emr~E~AevK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~ 207 (1118)
.+..++..+..+...+.+.. -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...+
T Consensus 252 ~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~ 331 (880)
T PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443321 122333333333333333333333333333333333333344444444555554444
Q ss_pred HHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHH
Q 001234 208 DLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 284 (1118)
Q Consensus 208 ~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie 284 (1118)
.++.....+..+.+.+.. .+...++.+.+.++.+.....-+..-+..+......+..++.++++.+..++
T Consensus 332 ~~~~~l~~~~~~~e~~~~-------~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 332 ECRVAAQAHNEEAESLRE-------DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444433333333323222 2333333333333333333333444444444444455555555555544444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.32 E-value=2.7e-05 Score=101.25 Aligned_cols=498 Identities=21% Similarity=0.273 Sum_probs=268.3
Q ss_pred hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhh--
Q 001234 218 ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS-- 295 (1118)
Q Consensus 218 ~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~-- 295 (1118)
......++++..+++.+...-|.=...++++.+.+.-|...++.++.-.+...+++-.|++....++.+.....+-+.
T Consensus 964 ~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~ 1043 (1930)
T KOG0161|consen 964 NKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAK 1043 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433333333334455555555555555555555555555555555555555554444443331
Q ss_pred -----hhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhh--hHHHHHHHH-----------------HhHHHH
Q 001234 296 -----NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKE--SNEIQKIIA-----------------NHESAL 351 (1118)
Q Consensus 296 -----dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE--~~EIQKLld-----------------eh~a~L 351 (1118)
++...-..+..-......+...|.++|-+|..++.++..-. ....|+.+. ...+.+
T Consensus 1044 rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ 1123 (1930)
T KOG0161|consen 1044 RKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKA 1123 (1930)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111122223344455555666666666665554322 122222222 234556
Q ss_pred hhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----HhhhhHHHHhhhhHH
Q 001234 352 RVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERSHLLEE 424 (1118)
Q Consensus 352 ~~Kk~EFElElE~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ksk~LKE 424 (1118)
+..++++..+++....-+++-......-. .++|.++..+-..+.+.....+.+...+. +.=.++.+-+..++.
T Consensus 1124 ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~ 1203 (1930)
T KOG0161|consen 1124 ERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQK 1203 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777776666643333333 35566666555555555444444444443 223445555666666
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001234 425 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 504 (1118)
Q Consensus 425 kEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~ 504 (1118)
....+......++.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-...-++++..-.++|..|+..+=.
T Consensus 1204 ~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~ 1280 (1930)
T KOG0161|consen 1204 DKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSR 1280 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 66666666666666666777777777777777777776665 456666777777777777788888888888888888
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001234 505 QKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 584 (1118)
Q Consensus 505 Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 584 (1118)
|.++....+..+-..+..|+.+-+.+ +.++ ...+..+-++..-+. ++..+.+.++.+|.-+.+....-.
T Consensus 1281 ~lee~e~~~~~~~r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~~~~l~ 1349 (1930)
T KOG0161|consen 1281 QLEEAEAKLSALSRDKQALESQLEEL---KRQL----EEETREKSALENALR----QLEHELDLLREQLEEEQEAKNELE 1349 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877766 3333 333444444443332 455567777777776666654211
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH------------------------------
Q 001234 585 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS------------------------------ 634 (1118)
Q Consensus 585 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~------------------------------ 634 (1118)
-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++.-++.+|-.
T Consensus 1350 r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~ 1428 (1930)
T KOG0161|consen 1350 RK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRA 1428 (1930)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 00 11112233445555555555555555555555555555444444322
Q ss_pred ----HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHH
Q 001234 635 ----FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ 707 (1118)
Q Consensus 635 ----L~EREk~FEe---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~ 707 (1118)
|..+-+.|+. +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|..+-.
T Consensus 1429 ~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~ 1508 (1930)
T KOG0161|consen 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKD 1508 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233321 112233444555555666666666666666555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 001234 708 KLEEQRQLLHADREEIQAESERL 730 (1118)
Q Consensus 708 KLk~QRE~~~~ERe~fl~~vEkl 730 (1118)
-+-.-...+...+..+-..++.+
T Consensus 1509 e~~k~v~elek~~r~le~e~~el 1531 (1930)
T KOG0161|consen 1509 EGGKRVHELEKEKRRLEQEKEEL 1531 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444333
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.20 E-value=4.7e-05 Score=92.12 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=64.4
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001234 114 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 193 (1118)
Q Consensus 114 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s 193 (1118)
...|.+=+.+.+|+.. +-.+...+.+.+..+..++-...+++......+.. ....++...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999833 35567778888888888888888888888777766 2245566667777777776666666
Q ss_pred HHhhhhHHHhhhhhHHH
Q 001234 194 SAERKLQEVVAREDDLS 210 (1118)
Q Consensus 194 ~aerKL~eVEaRE~~Lr 210 (1118)
.+...+..+...-..|.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555554444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=0.00016 Score=91.98 Aligned_cols=77 Identities=8% Similarity=0.022 Sum_probs=54.8
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhH
Q 001234 132 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDD 208 (1118)
Q Consensus 132 VadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~ 208 (1118)
...|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..-++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~ 472 (1311)
T TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR 472 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHH
Confidence 34467777777777777777777788888888888887777777777777777776666666666666655554443
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=0.00025 Score=90.36 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001234 175 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 252 (1118)
Q Consensus 175 E~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q 252 (1118)
...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555555555555555 11244455555555555555554
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=98.91 E-value=0.00058 Score=82.54 Aligned_cols=41 Identities=7% Similarity=0.165 Sum_probs=22.5
Q ss_pred hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhh
Q 001234 217 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 257 (1118)
Q Consensus 217 ~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNq 257 (1118)
..+....+..+..-...+.+|+..+.+.+..+...+.++.+
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~ 284 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE 284 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444455666666666666666665555544
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.81 E-value=0.0013 Score=80.12 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 001234 813 WIKRFADLVF 822 (1118)
Q Consensus 813 WlrKCTskIF 822 (1118)
=|.+++..+|
T Consensus 1018 ~i~~~~~~~f 1027 (1179)
T TIGR02168 1018 TLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHH
Confidence 3444445555
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.71 E-value=0.0026 Score=77.69 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=14.3
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001234 683 MDRQRRDREWAELNNSIEELMVQRQKLEE 711 (1118)
Q Consensus 683 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 711 (1118)
..-..+..+..++...++.|...-.++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555444443
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=98.66 E-value=0.0034 Score=76.12 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=9.6
Q ss_pred CCCCcHHHHHHHHHc
Q 001234 20 SPLSDESIWKRLKEA 34 (1118)
Q Consensus 20 ~~~~d~~iWkr~~ea 34 (1118)
+++|-..+...+.=|
T Consensus 32 nG~GKStil~ai~~~ 46 (880)
T PRK03918 32 NGSGKSSILEAILVG 46 (880)
T ss_pred CCCCHHHHHHHHHHH
Confidence 556677777666544
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.55 E-value=0.014 Score=77.28 Aligned_cols=281 Identities=22% Similarity=0.226 Sum_probs=134.3
Q ss_pred ChHHHhhhcHH--HHHHHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001234 37 DEVSIKRRDKA--ALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEA 114 (1118)
Q Consensus 37 De~S~~rrD~~--aLia~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEa 114 (1118)
+++-|..+|.. .|-..+.+-|+. .=++--+|--++-|+-.++.....=+.-.++|++.+.+..+.-.-+=.++
T Consensus 836 ~ee~~~~~~~e~~~l~~~l~~~e~~-----~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l 910 (1930)
T KOG0161|consen 836 TEEEMRAKEEEIQKLKEELQKSESK-----RKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL 910 (1930)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556555543 233344444444 55566677777777777777777777777777777777766543221111
Q ss_pred HHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHh
Q 001234 115 RKREESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAK 177 (1118)
Q Consensus 115 eKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK-----------------~tsesKLaEA~aLv~~~eeKslEvE~K 177 (1118)
..+..-+..+..=.++|++-.+++..++.+.+ .+.+.++-....=+.+ ..+..+|
T Consensus 911 ----~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~k 982 (1930)
T KOG0161|consen 911 ----KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISK 982 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 11111122222222333444444443333332 1222222222221111 2223333
Q ss_pred hhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhh
Q 001234 178 LHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 257 (1118)
Q Consensus 178 L~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNq 257 (1118)
|-.+...+-+++| .+.-.|+.-+..-..|.+....+.+..+..+..+..++....+.+|.....+-.|...|..+..
T Consensus 983 L~kekk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~ 1059 (1930)
T KOG0161|consen 983 LSKEKKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE 1059 (1930)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3333333222222 2222334444444455555555555555555556666666666665555555555555544444
Q ss_pred hhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001234 258 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 333 (1118)
Q Consensus 258 REe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~ 333 (1118)
-.....+-+..++.++-+|-.++.+++.....+....-.|..--+.+..-++++..-+..+.+-|+....|...|.
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666666666655544444333333333333344444555555555555555555554443
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.48 E-value=0.01 Score=72.78 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=22.4
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001234 684 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 732 (1118)
Q Consensus 684 ~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ 732 (1118)
....+..+...++.+|..|...-..++++-+.+..+...+-.+++.++.
T Consensus 682 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~ 730 (895)
T PRK01156 682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554444444444444444444444444433
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=98.39 E-value=0.017 Score=70.86 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001234 658 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL 715 (1118)
Q Consensus 658 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~ 715 (1118)
.....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777777777666544455444444
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.35 E-value=0.028 Score=71.85 Aligned_cols=207 Identities=14% Similarity=0.275 Sum_probs=148.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001234 484 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 563 (1118)
Q Consensus 484 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK 563 (1118)
++.+|......|.++++.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+........+..-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988888888888888888888777777777666666666677777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001234 564 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 643 (1118)
Q Consensus 564 ~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE 643 (1118)
..+..-+..+...+..+..+-..|- .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776665553 455566666666666666566666666666666666666666665555554
Q ss_pred H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001234 644 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 694 (1118)
Q Consensus 644 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE 694 (1118)
+ ....+|.. |+- .-..++++++++..++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4 33344432 221 445567888888899999998888887766666666654
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.30 E-value=0.028 Score=69.34 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.1
Q ss_pred HHHHHHHHHccCChHH
Q 001234 25 ESIWKRLKEAGLDEVS 40 (1118)
Q Consensus 25 ~~iWkr~~eaG~De~S 40 (1118)
.++=..|...||+...
T Consensus 120 ~~~~~~l~~~~~~~~~ 135 (1164)
T TIGR02169 120 SEIHDFLAAAGIYPEG 135 (1164)
T ss_pred HHHHHHHHHcCCCcCc
Confidence 3455568888876543
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.28 E-value=0.039 Score=70.37 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=49.5
Q ss_pred chhheehhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhh
Q 001234 73 GLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAET 149 (1118)
Q Consensus 73 GLLLiEkKEwtSK~EeLkqa~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~Aev 149 (1118)
++++.+-..+..+++++...+...+.- +......+.-.+...+.+-+.++..+..-.++...+...+.++-.+.+.+
T Consensus 228 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 307 (1163)
T COG1196 228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLL 307 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777776666533 33444445555666666666676666666667776666666666666666
Q ss_pred hhhh
Q 001234 150 KVAA 153 (1118)
Q Consensus 150 K~ts 153 (1118)
+-..
T Consensus 308 ~~~~ 311 (1163)
T COG1196 308 RERL 311 (1163)
T ss_pred HHHH
Confidence 5433
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.28 E-value=0.031 Score=69.01 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001234 700 EELMVQRQKLEEQRQLLHADREEIQAESERLK 731 (1118)
Q Consensus 700 eeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK 731 (1118)
+++...-..|.+|++.+...+..|...|+.|+
T Consensus 982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666666666666666665
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.90 E-value=0.24 Score=65.59 Aligned_cols=459 Identities=18% Similarity=0.214 Sum_probs=238.4
Q ss_pred HHhhhcHHHHHHHHHHhhhhhcc----hhhhhh-ccccchhheeh-------------hhhh---hhHHHHHHHHHHHHH
Q 001234 40 SIKRRDKAALIAYIAKLETECYI----LKIFEH-QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL 98 (1118)
Q Consensus 40 S~~rrD~~aLia~IskLE~E~~~----~~lydY-QynMGLLLiEk-------------KEwt---SK~EeLkqa~~eae~ 98 (1118)
+-.+.+.+-|-.+++.|++..-- ...|+- +|||..-+.+. ..++ |+..++++.+-..+.
T Consensus 861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888887211 111121 45666655543 2333 445566778888888
Q ss_pred HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001234 99 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 178 (1118)
Q Consensus 99 ~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL 178 (1118)
+|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999988888888888887777665544344456677777777777777778888888888887777765544444332
Q ss_pred hhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHH---HhchHHHHHHHHHHHHHHHHHhhhh
Q 001234 179 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL 255 (1118)
Q Consensus 179 ~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~q---Re~L~eweKkLqe~eerL~e~q~~L 255 (1118)
-.+++..+.+-.. |..++........-|+.++..- .+.|.....-+......+.+.....
T Consensus 1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2333333333332 3333334444444444443221 2333344444444444444444444
Q ss_pred hhhhHhhHhhHHHHhHhHHHHH----HHhhhHH---HHHHHHhhhhhhhhHhHH--HhhhhHHHHHHHHHH--HHHhHHh
Q 001234 256 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK 324 (1118)
Q Consensus 256 NqREe~~~e~~~~l~~kEkeLE----e~kkkie---~~~~~Lk~ke~dl~~rl~--~l~~rEe~~~~~~~~--Le~KEkE 324 (1118)
-++..-.-+..+-...+++-|+ ...+.|. ..+..|...=+.+....+ .++.-..-...+... .--+|++
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence 4443333333222222222222 2222221 122222222222222221 111111111111110 1124455
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 001234 325 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG 388 (1118)
Q Consensus 325 Ll~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~---------eeEle~K~~~~E-~rEv------el~ 388 (1118)
+..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..+. .+|- +..
T Consensus 1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 554444455555433322 22333444444444555555555 344445555544 2222 223
Q ss_pred hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 001234 389 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD 456 (1118)
Q Consensus 389 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~-------~L-----~~eKEel~~lK~d 456 (1118)
+-.+++ +.|..+.+++.-.=.-|..-++.|+..=....++=+.|+.+.. .| ..|+.++.+++.+
T Consensus 1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 333333 3444444444333333333333333333333333333333222 12 2347788888888
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001234 457 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 533 (1118)
Q Consensus 457 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 533 (1118)
|......+++....|.+-... +.++|-++|...|..-..+..+.++...|+.-+-+.+.-|.-.-++
T Consensus 1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887666666555443 4455578888888888888999999999999999999988876665
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.019 Score=70.05 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=127.6
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 001234 352 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 422 (1118)
Q Consensus 352 ~~Kk~EFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L 422 (1118)
|.|+-.|+ +|||..|+-+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665 788888888888777777766666543 22333 3334455667777777666654332 223333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001234 423 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 490 (1118)
Q Consensus 423 KEkEksL~aeEK~--le~e-------k~~L~~eKEel~~lK---~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lr 490 (1118)
..+|-.-+-.||. ++-+ .+|...+.+.|-.+| ..++--+..|..++.++..--....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333322222221 1111 112222333333332 2333444444555555544443333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001234 491 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 557 (1118)
Q Consensus 491 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~-------------~~ 557 (1118)
..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 35689999999999999999999988754 34444445555555444322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001234 558 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 592 (1118)
Q Consensus 558 E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe 592 (1118)
+-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77788888899999999999999988888777766
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.88 E-value=0.21 Score=64.07 Aligned_cols=230 Identities=21% Similarity=0.280 Sum_probs=137.1
Q ss_pred cHHHHHHHHHccCChH--------------HHhhhcHHHHHHHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHH
Q 001234 24 DESIWKRLKEAGLDEV--------------SIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQI 89 (1118)
Q Consensus 24 d~~iWkr~~eaG~De~--------------S~~rrD~~aLia~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeL 89 (1118)
-.||=.-|...|++.. +++..++..|++-++=. . .+-.++++.
T Consensus 121 ~~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv-------~----------------~y~~r~~ea 177 (1163)
T COG1196 121 LKDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGV-------S----------------KYKERKEEA 177 (1163)
T ss_pred HHHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhch-------H----------------HHHHHHHHH
Confidence 3467788888887433 34556666665544321 1 122334444
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhh
Q 001234 90 KASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQK 169 (1118)
Q Consensus 90 kqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~ee 169 (1118)
...+..++.-|.| =-.-+.|.+++=+.|++---.- +|-.+|...++.++..+.-.++ -.++.-...+.+
T Consensus 178 ~~~L~~~~~nl~~----~~~~~~el~~~l~~L~~q~~~a-~~y~~l~~e~~~~~~~~~~~~~------~~~~~~l~~~~~ 246 (1163)
T COG1196 178 ERKLERTEENLER----LEDLLEELEKQLEKLERQAEKA-ERYQELKAELRELELALLLAKL------KELRKELEELEE 246 (1163)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 5555555555544 2233567777777777655443 3455778888888877766552 233333444444
Q ss_pred hhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 001234 170 KFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLL 249 (1118)
Q Consensus 170 KslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~ 249 (1118)
....+++-+.+....+.++...-..+..+++++.+....++.+-+.+......++.++...++.+..-...+.+.+.++.
T Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1163)
T COG1196 247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE 326 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666666667777777777777776666666677788888888888777777777777777766
Q ss_pred HHhhhhhhhhHhhHhh---HHHHhHhHHHHHHHhhhHHHHH
Q 001234 250 DAQTLLNEREDHILSK---LQELSRKEKELEASRANVEEKF 287 (1118)
Q Consensus 250 e~q~~LNqREe~~~e~---~~~l~~kEkeLEe~kkkie~~~ 287 (1118)
..+.-+-.+...+... ...+......+.......+...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~ 367 (1163)
T COG1196 327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL 367 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655 3444444444444443333333
No 20
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.23 Score=62.03 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=38.2
Q ss_pred HHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhh------hhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhh
Q 001234 183 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 256 (1118)
Q Consensus 183 a~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~------E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LN 256 (1118)
..+++..+....+..+++.++.....+....--+.. +.+.....+....+.+..++.++......+.+.....+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443333332 23333333333344444444444444444444444444
Q ss_pred hhhHhhHhhHHH
Q 001234 257 EREDHILSKLQE 268 (1118)
Q Consensus 257 qREe~~~e~~~~ 268 (1118)
+...-+.++...
T Consensus 354 ~~~~~~~~~~~~ 365 (908)
T COG0419 354 ELAKLLEERLKE 365 (908)
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.68 E-value=0.32 Score=60.49 Aligned_cols=322 Identities=19% Similarity=0.272 Sum_probs=192.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHHH
Q 001234 301 LVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAIK 365 (1118)
Q Consensus 301 l~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~a-----RE~---~EIQKLldeh~a~L~~Kk~EF-------ElElE~k 365 (1118)
...+.-.|-.+..++..|+.+|++...+-+.|-- ++. ..+|++|+.- +++...| |.|+...
T Consensus 182 ~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 182 LRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777788888888888666443322 222 3568887764 3444444 5555444
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHH
Q 001234 366 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 445 (1118)
Q Consensus 366 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~ 445 (1118)
+..++---. -+.-..++++.........|-. ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-+
T Consensus 258 ~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 258 RSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred Hhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 443321111 1222333444444444443321 333344455666666666666666666666667777777888888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001234 446 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 525 (1118)
Q Consensus 446 eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~ 525 (1118)
--.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd- 412 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD- 412 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888899999999999999999999999999999999887665444455666666666565666666555543322111
Q ss_pred HHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 001234 526 EWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 593 (1118)
Q Consensus 526 EWE~LDEKRael~------------KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMeh 593 (1118)
..|++-++.|. -.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+ |
T Consensus 413 --~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-s 489 (775)
T PF10174_consen 413 --RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-S 489 (775)
T ss_pred --HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H
Confidence 11222222222 33333333444444444444444444444444667777777777777777655 6
Q ss_pred hhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001234 594 EHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS 634 (1118)
Q Consensus 594 Ers~~~eKiq~Erad~l~d~Emqkre---LE~~iqkRqEEiE~~ 634 (1118)
|+..-+.-++.+-+.+.-+.+-+..+ |+..+++.++++++-
T Consensus 490 Ek~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 490 EKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence 77777777777777776666555544 446666666666543
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.67 E-value=0.26 Score=59.16 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.6
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001234 689 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 732 (1118)
Q Consensus 689 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ 732 (1118)
.=+.+|-++.|.+|+.-=+-+++-.|+|..++-.++..|++|..
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999998863
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.4 Score=59.95 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001234 481 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 544 (1118)
Q Consensus 481 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I 544 (1118)
..++...+..+..+|+...+.++.-. ....+.++++..-..+...|..|.+.-..++......
T Consensus 557 l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 557 LKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444333 2224444444444444455555555555554444444
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.47 E-value=2.6e-05 Score=95.74 Aligned_cols=509 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 001234 111 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES 183 (1118)
Q Consensus 111 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAea 183 (1118)
|-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.++ |.--.+-++
T Consensus 41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~ 120 (859)
T PF01576_consen 41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA 120 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555566666665666777777777777666444443333333333222222221 222234456
Q ss_pred HHHHHhcchhHHhhhh----HHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001234 184 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 259 (1118)
Q Consensus 184 ~~AEa~Rk~s~aerKL----~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqRE 259 (1118)
.+++.-++|+.+--.| ..+.---..|-+.+-.|..|......++..-=.....-+|.....+.-|.+.+.-+..-+
T Consensus 121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e 200 (859)
T PF01576_consen 121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE 200 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 6777777775543222 222222233344444444444444444433333344446666666666666666666666
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001234 260 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 339 (1118)
Q Consensus 260 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~E 339 (1118)
..+++.......++.++.++...++.. ...+..|+. ....-+..|..+...|..-
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE---- 255 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE---- 255 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence 666666666666666555555544333 222222211 0011122233333222211
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHH
Q 001234 340 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 416 (1118)
Q Consensus 340 IQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~ 416 (1118)
+ -.+..|..+.+..+.+++..+..++++-++|... +..-..+|..+-.+ -+.......+.|.+--+.|.
T Consensus 256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~ 327 (859)
T PF01576_consen 256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLE 327 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHH
Confidence 0 1345667778888888888888888887776542 22233333333222 23344444556666667777
Q ss_pred HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001234 417 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 493 (1118)
Q Consensus 417 ~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a---~~e~q~~qi~ee~E~LkiteeER~E~lrLQs 493 (1118)
.++..+.+.-..+.+.--.|+.-+..|+.+-+.+.. +|++..+ .++.+.++++.....++.- -.
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~ 394 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence 777777777777777777787778888877666554 5555444 5566666666544433322 13
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001234 494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 573 (1118)
Q Consensus 494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~ 573 (1118)
.+..+.|..-.....+..++-.|+.+.......|+.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.+
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence 556677777777777788888888887777777777777777777777777655443333332 2222222111111111
Q ss_pred HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001234 574 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 653 (1118)
Q Consensus 574 krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~I 653 (1118)
+..++-+ .+-+...|..+.-|+..|+.-+-++++.|.+|+..|++.+..=...|
T Consensus 474 ~~~leE~--------------------------E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l 527 (859)
T PF01576_consen 474 QEQLEEA--------------------------EDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL 527 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence 1122211 12223455567778888888899999999999999998776544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001234 654 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 703 (1118)
Q Consensus 654 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~ 703 (1118)
-+|..-+..| -+.|.++.-.|++++.+..+|.-.++..+
T Consensus 528 ~~le~~LE~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 528 ESLEAELEEE-----------RKERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp --------------------------------------------------
T ss_pred HHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443333222 22344455555555555555544444333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.12 E-value=1.1 Score=54.04 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001234 493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 572 (1118)
Q Consensus 493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 572 (1118)
+.+-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444567788888887776 68899988777777777655443 56778888887776665555
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 001234 573 HKRDVDSLNREREEFMNKMV 592 (1118)
Q Consensus 573 ~krelEsL~~ekEsF~~kMe 592 (1118)
.+.+-|.|..++-+.|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444443
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.97 E-value=1.8 Score=55.38 Aligned_cols=107 Identities=25% Similarity=0.258 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001234 447 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 525 (1118)
Q Consensus 447 KEel~~lK~dlEK~~a~~e~q~~qi~ee~E~L-kiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~ 525 (1118)
++++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333334444444444444444444444444 44555555544444556666666666666666666666666655555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001234 526 EWEMIDEKREELRKEAERVAVERVVVSK 553 (1118)
Q Consensus 526 EWE~LDEKRael~KEa~~I~eEre~lek 553 (1118)
|-+.+..+...|.+-...+..+=..+.+
T Consensus 437 e~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 437 EKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6555656666666666665554444433
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.88 E-value=0.84 Score=48.93 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=85.3
Q ss_pred hchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHH
Q 001234 232 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 311 (1118)
Q Consensus 232 e~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~ 311 (1118)
+.|..-..+|...+.++-+..+.+..=|.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|..+
T Consensus 57 erL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 57 ERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555554444444444444444444444444
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001234 312 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 391 (1118)
Q Consensus 312 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 391 (1118)
+..++.+..-|.+|..+-..|-+=|-.+.+ -.+=+-.++.+-+.|..-|..=..-++--|..+...|
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~-------------~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEK-------------ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332221110 0111122222233333333333344444455566666
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001234 392 ESLLEREHDLEVQSRALVDKEKDLVERSHLL 422 (1118)
Q Consensus 392 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 422 (1118)
..+..-+-.|..--.+.+....+|+.-+..|
T Consensus 204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666555443
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.81 E-value=0.58 Score=50.12 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHH
Q 001234 238 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 317 (1118)
Q Consensus 238 eKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~ 317 (1118)
.-++.+.+.+|-++...+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|..--..|-.-|-.....-..
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 34444455555555555555555555556666666666666655555554444444444433333332222222222222
Q ss_pred HHHhHHhHHHHHHHHhh
Q 001234 318 LQKKEQKLLVSQETLAS 334 (1118)
Q Consensus 318 Le~KEkELl~leEKL~a 334 (1118)
.+.-|..+..|..+|..
T Consensus 171 e~~~e~~i~~L~~~lke 187 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23334444445555443
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.38 E-value=2 Score=46.82 Aligned_cols=232 Identities=21% Similarity=0.340 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001234 494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 570 (1118)
Q Consensus 494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek---~~~~E~erLK~EK~~~r 570 (1118)
.|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.|..-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 445677777777777777788888888888888887777777776666555433332222 23456677888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001234 571 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 648 (1118)
Q Consensus 571 ~~~krelEsL~~ekE-sF~~kMehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~ 648 (1118)
..|..++..|...-. .+-..|..- ...+..-+..=| ...+..+.+-+.++|..++-+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888876553 222222210 122222233333 3444445555555555555544444333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001234 649 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 727 (1118)
Q Consensus 649 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~fl~~v 727 (1118)
--..+.+ +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233444444444444444444444455555555555433332 22233334444444444455555565
Q ss_pred HHhhhhhhhHhHH
Q 001234 728 ERLKKLEDLKIAV 740 (1118)
Q Consensus 728 EklK~ckncg~~~ 740 (1118)
..+..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 5555555555444
No 30
>PRK11637 AmiB activator; Provisional
Probab=96.38 E-value=1.4 Score=50.59 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001234 305 LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 348 (1118)
Q Consensus 305 ~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~ 348 (1118)
...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus 92 ~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 92 RETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555554444333333333333
No 31
>PRK12704 phosphodiesterase; Provisional
Probab=96.37 E-value=0.15 Score=60.70 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001234 355 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 434 (1118)
Q Consensus 355 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK 434 (1118)
+.+++.|+...|..++.++..+ +.++..+|..|.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555443 444556666677777777777777777777777777666666666665555
Q ss_pred HhHH
Q 001234 435 EADL 438 (1118)
Q Consensus 435 ~le~ 438 (1118)
+++.
T Consensus 132 ~~~~ 135 (520)
T PRK12704 132 ELEE 135 (520)
T ss_pred HHHH
Confidence 5543
No 32
>PRK11637 AmiB activator; Provisional
Probab=96.35 E-value=2.9 Score=48.26 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001234 596 SEWFTKIQQERADFLLGIEMQKRDLE 621 (1118)
Q Consensus 596 s~~~eKiq~Erad~l~d~EmqkreLE 621 (1118)
..++..+.+-+.+++..|.-.+..|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555
No 33
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.25 E-value=5.3 Score=50.27 Aligned_cols=181 Identities=24% Similarity=0.231 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001234 135 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 214 (1118)
Q Consensus 135 LEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerl 214 (1118)
|-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..++ +..-.+.+.+.+.+.+++-..|+--
T Consensus 133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le~l-- 198 (775)
T PF10174_consen 133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLESL-- 198 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHHHH--
Confidence 45677778888888888888777777777777655544431 1111122333333333333222211
Q ss_pred HhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH-HHH-HHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhh
Q 001234 215 SFKADCEEKEREIIRERQSLSDRKKILQQEHE-RLL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 292 (1118)
Q Consensus 215 Sf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee-rL~-e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 292 (1118)
.+.++.....-|+ .....++-..+ ... -.|..|...+..|.+..+.+..++-++..++..++....--..
T Consensus 199 -----le~~e~~~~~~r~---~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~ 270 (775)
T PF10174_consen 199 -----LERKEKEHMEARE---QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDR 270 (775)
T ss_pred -----HHHHHHHhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence 1111111111111 00001100000 000 2455666666666666666666666666665555433221111
Q ss_pred hhhhhhH-hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001234 293 EKSNLDL-TLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 338 (1118)
Q Consensus 293 ke~dl~~-rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~ 338 (1118)
....+.. +...+..+-+ ++..+..|..|..||..++-+|......
T Consensus 271 ~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 271 LDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1011111 1111111111 6777778888888888888888766653
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.18 E-value=6.3 Score=50.48 Aligned_cols=300 Identities=23% Similarity=0.296 Sum_probs=176.8
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHH---HH
Q 001234 210 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK 286 (1118)
Q Consensus 210 rRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie---~~ 286 (1118)
|++.++.--|-+-+...|..-=+.+.++=+.|.+..+.|..-|.+=++| +.-+++.-.++|-++...++ ..
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3445566677777777888777888888778888888888777765554 23345556666666665543 33
Q ss_pred HHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 001234 287 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA 363 (1118)
Q Consensus 287 ~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leE---KL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE 363 (1118)
+.+.-++-+++. ..+..++.+.......+..-|..|..|-+ .+.+++..-+++ ++.|..+..+|--+++
T Consensus 246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT 317 (1200)
T ss_pred HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence 334444433333 33445555666666666555555555433 445555544443 3344444444444433
Q ss_pred HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001234 364 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA 431 (1118)
Q Consensus 364 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksL~a 431 (1118)
-- |++.-..++.=....+.++.++...+ ..+...|..+...+..+..+..||-+| ++.-+++++=|+.
T Consensus 318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ 397 (1200)
T KOG0964|consen 318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS 397 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence 21 11121111111122222222222222 123334444444455555555555443 3444667777776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001234 432 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 511 (1118)
Q Consensus 432 eEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~Llk 511 (1118)
+=..| +.-+..-++..+.+.-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus 398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 777888888888888888888888888877777777777777777788888888888888877666666666
Q ss_pred hhHHHHHHHHHHHHH
Q 001234 512 ETDKLQLEKAKFEAE 526 (1118)
Q Consensus 512 Eae~Lk~eKekFE~E 526 (1118)
|.-.|+..-++.+-+
T Consensus 475 EE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666676666655543
No 35
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.18 E-value=8.7 Score=52.06 Aligned_cols=344 Identities=18% Similarity=0.180 Sum_probs=167.5
Q ss_pred hhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHH
Q 001234 169 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKIL 241 (1118)
Q Consensus 169 eKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~-------~E~ea~E~~~~~qRe~L~eweKkL 241 (1118)
+....+..=++..+.....++--...+..++.-+++.=+.|+.+-..|. .|.+++....+.++..|...+-..
T Consensus 710 er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~ 789 (1822)
T KOG4674|consen 710 ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQK 789 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566777777788887888888899999998888888876655 445555555555555555555554
Q ss_pred HHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHH----HhhhhHHHHHHHHH-
Q 001234 242 QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV----SLLKREEAVIEREA- 316 (1118)
Q Consensus 242 qe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~----~l~~rEe~~~~~~~- 316 (1118)
...++-...++.-+++ .+..++.+|..++++++....-++.-..+++.-+. .+..-....+.+..
T Consensus 790 ~~~e~s~~~~k~~~e~----------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~ 859 (1822)
T KOG4674|consen 790 NELEESEMATKDKCES----------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTS 859 (1822)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444442 23445555555555555555444443333333222 22222333333333
Q ss_pred ------HHHHhHHhHHHHHHHHhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHH---HHHHHHH
Q 001234 317 ------SLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIE---KKRRAWE 381 (1118)
Q Consensus 317 ------~Le~KEkELl~leEKL~aRE~~EIQKLldeh---~a~L~~Kk~EFElElE~k---rKs~eeEle---~K~~~~E 381 (1118)
.+.+.|..+..|..+|. .+.++.+..+. .....-+-..|..++++- +..|-.... +=-....
T Consensus 860 l~~~~~~~~~le~k~~eL~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~ 936 (1822)
T KOG4674|consen 860 LDSVSTNIAKLEIKLSELEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYS 936 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444442 35666666665 233333334466665554 333322221 1112222
Q ss_pred hhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHH
Q 001234 382 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEV 450 (1118)
Q Consensus 382 ~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~--------aeEK~---le~ek~~L~~eKEel 450 (1118)
.-|.-|..+...+.+--+.++.+.+.+..+--.|+.++..|+..=..|. -.+++ +..+..-++.+...+
T Consensus 937 s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~ 1016 (1822)
T KOG4674|consen 937 SLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSL 1016 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHH
Confidence 3333333343444443344444444444444444444333332211111 11221 122233334444444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001234 451 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 523 (1118)
Q Consensus 451 ~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER----~E~l---rLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF 523 (1118)
.....+..+....+...+.. ..+.+....+.- ..|. ..=.+|+++..+|-.+-..|-+.++-+...-..|
T Consensus 1017 ~~~~s~~~~~~~~~k~dl~~---~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~ 1093 (1822)
T KOG4674|consen 1017 LKAASQANEQIEDLQNDLKT---ETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQ 1093 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhc
Confidence 44444333333333333222 222222222211 1111 1224567777777777777888888777788888
Q ss_pred HHHHh
Q 001234 524 EAEWE 528 (1118)
Q Consensus 524 E~EWE 528 (1118)
++-|.
T Consensus 1094 ~~~w~ 1098 (1822)
T KOG4674|consen 1094 ERDWS 1098 (1822)
T ss_pred ccchH
Confidence 88885
No 36
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.04 E-value=7.4 Score=50.03 Aligned_cols=274 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001234 255 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 334 (1118)
Q Consensus 255 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~a 334 (1118)
||+++..+......|...+++|...+..-..- ..+++.|+-+=.+|.-++..+..
T Consensus 679 l~~~~~~~~~~q~el~~le~eL~~le~~~~kf-------------------------~~l~~ql~l~~~~l~l~~~r~~~ 733 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELEALERELKSLEAQSQKF-------------------------RDLKQQLELKLHELALLEKRLEQ 733 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred hhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHH--HHHHHHHHHh-hhhhhhhhHHHHHhhhhhHHHhHHHHHHh
Q 001234 335 KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE--IEKKRRAWEL-RDLDLGQREESLLEREHDLEVQSRALVDK 411 (1118)
Q Consensus 335 RE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeE--le~K~~~~E~-rEvel~h~Eekl~kREqaLe~k~~~lkEK 411 (1118)
-+.--++.=+..+.-.+..=.++......-.+++.+.= |+++..+|.. ||..++..+..+-.-.|.++..+..++..
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~ 813 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR 813 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 001234 412 EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 491 (1118)
Q Consensus 412 Ekdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrL 491 (1118)
+.++..=.-...+-++.+...+..++.-..++..=+.++-.+.+.+-+.-.....-..+|...+.++...-.+-+.++..
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~ 893 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTS 893 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH------------------------HHHHHHHHH
Q 001234 492 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR------------------------KEAERVAVE 547 (1118)
Q Consensus 492 QseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~------------------------KEa~~I~eE 547 (1118)
+-+.-.|+-..-.-...|..|...++.++..-.++-+.|-.|-+=|. .+++.+.+-
T Consensus 894 ~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k 973 (1174)
T KOG0933|consen 894 QEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEK 973 (1174)
T ss_pred HHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHH
Q ss_pred HHHHHH
Q 001234 548 RVVVSK 553 (1118)
Q Consensus 548 re~lek 553 (1118)
..++++
T Consensus 974 ~~~l~k 979 (1174)
T KOG0933|consen 974 KEKLEK 979 (1174)
T ss_pred HHHHHh
No 37
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.97 E-value=0.31 Score=57.95 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001234 355 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 434 (1118)
Q Consensus 355 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK 434 (1118)
+.+++.|+...|..++.+++.+ +.++..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.+....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555444 444555566666666666666666666666666666666666666555555
Q ss_pred Hh
Q 001234 435 EA 436 (1118)
Q Consensus 435 ~l 436 (1118)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 38
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.94 E-value=8.8 Score=50.10 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001234 494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW----EMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 568 (1118)
Q Consensus 494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW----E~LD-EKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~ 568 (1118)
.+++....+..+...+..+...+++++..|..+- -.+. +..+..+--...+..+-+.+..-+.......+.++..
T Consensus 675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666655432 2222 4444445555566666677777777777777777777
Q ss_pred HHHHHHhhhhh
Q 001234 569 MRDQHKRDVDS 579 (1118)
Q Consensus 569 ~r~~~krelEs 579 (1118)
++.+|..+|.+
T Consensus 755 le~~~~~eL~~ 765 (1201)
T PF12128_consen 755 LEQQYNQELAG 765 (1201)
T ss_pred HHHHHHHHHHh
Confidence 87777776644
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.80 E-value=2 Score=48.23 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=116.1
Q ss_pred HHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001234 402 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 481 (1118)
Q Consensus 402 e~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lkit 481 (1118)
=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +.
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~ 204 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence 3444555556666666666666655555555555555555555555555555555555555555555544443333 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001234 482 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS 561 (1118)
Q Consensus 482 eeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~er 561 (1118)
.-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-.+
T Consensus 205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2334444 346677777777788888888999999999999999999999999999999999999899999999999
Q ss_pred hHHHHHHHHHHH
Q 001234 562 LRQERDAMRDQH 573 (1118)
Q Consensus 562 LK~EK~~~r~~~ 573 (1118)
||..-+.++...
T Consensus 281 Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 281 LKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 40
>PRK00106 hypothetical protein; Provisional
Probab=95.74 E-value=0.78 Score=55.14 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001234 356 SEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 435 (1118)
Q Consensus 356 ~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~ 435 (1118)
.+++.|+...|..++.++...+.. +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....++
T Consensus 75 lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~ 147 (535)
T PRK00106 75 LEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544443333 4444555555555555555555555555555555555555555444444
Q ss_pred h
Q 001234 436 A 436 (1118)
Q Consensus 436 l 436 (1118)
+
T Consensus 148 ~ 148 (535)
T PRK00106 148 V 148 (535)
T ss_pred H
Confidence 4
No 41
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.41 E-value=0.0041 Score=77.02 Aligned_cols=244 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHhhhhhcch--hhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhh
Q 001234 44 RDKAALIAYIAKLETECYIL--KIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 121 (1118)
Q Consensus 44 rD~~aLia~IskLE~E~~~~--~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnL 121 (1118)
|.+..|.+...+|++|..-| .|=+.....+-|--.+.-|.+..++++..+++- .+.+.+-...+..++.-=+.|
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHH
Confidence 34455666677777772211 133333445555555666666666666655543 122222233455556666788
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHH
Q 001234 122 KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE 201 (1118)
Q Consensus 122 kKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~e 201 (1118)
+..|.-|-.+...|++.|.-+..+.+.+|--++.-... .+..+++=---...+|..+...+-+++.+.+.+++.-+-
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~r 353 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKR 353 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888999999999999999998888666553332 233333222223445666666666666666666665554
Q ss_pred HhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhh
Q 001234 202 VVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRA 281 (1118)
Q Consensus 202 VEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kk 281 (1118)
+.+--.+++-+.-...+.+...++...+--..|.+|..++......+-..++-....+-.++..-..+....-.++.+.
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le- 432 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE- 432 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 4444444444444444555555554433446678888887777766666666666666666655555554444444333
Q ss_pred hHHHHHHHHhhhhhhhh
Q 001234 282 NVEEKFKALNEEKSNLD 298 (1118)
Q Consensus 282 kie~~~~~Lk~ke~dl~ 298 (1118)
..+..|..+-.++.
T Consensus 433 ---re~k~L~~El~dl~ 446 (859)
T PF01576_consen 433 ---RENKQLQDELEDLT 446 (859)
T ss_dssp -----------------
T ss_pred ---HHHHHHHHhhccch
Confidence 23344444444443
No 42
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=14 Score=48.00 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHH
Q 001234 497 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQH 573 (1118)
Q Consensus 497 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre---~lek~~~~E~erLK~EK~~~r~~~ 573 (1118)
-.|......-....+.+..++..-++|+++|..++-++++..+|.+.....|- ++..-...|.+||+.+-...-
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~--- 379 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA--- 379 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---
Confidence 33444444455566778889999999999999999999999999999887554 455555667788877655433
Q ss_pred HhhhhhhhhhHHHHHHhhhh
Q 001234 574 KRDVDSLNREREEFMNKMVH 593 (1118)
Q Consensus 574 krelEsL~~ekEsF~~kMeh 593 (1118)
..+|+.|++...+=-+...|
T Consensus 380 ~~el~~ln~~~r~~~~~ld~ 399 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDH 399 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66666666655544444443
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.17 E-value=8.8 Score=44.94 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=52.2
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001234 460 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK 539 (1118)
Q Consensus 460 ~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~K 539 (1118)
.++.++.+...+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-.++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 45555555555555555555555556665555566666666666666666666666666666666654444444444444
Q ss_pred HHHHHHHHHH
Q 001234 540 EAERVAVERV 549 (1118)
Q Consensus 540 Ea~~I~eEre 549 (1118)
++..+..++.
T Consensus 387 ~l~~~~~~~~ 396 (562)
T PHA02562 387 ELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 44
>PRK12704 phosphodiesterase; Provisional
Probab=95.16 E-value=0.28 Score=58.44 Aligned_cols=62 Identities=31% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001234 364 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 428 (1118)
Q Consensus 364 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 428 (1118)
..+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.
T Consensus 57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~ 118 (520)
T PRK12704 57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKE 118 (520)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456655555554 34555566666666555554444444444444444444333333
No 45
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.93 E-value=0.35 Score=57.55 Aligned_cols=70 Identities=29% Similarity=0.291 Sum_probs=36.8
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001234 364 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 436 (1118)
Q Consensus 364 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l 436 (1118)
..+..+++++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++++
T Consensus 51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666665554 4455566666666666655555555555555554444444444444444433
No 46
>PRK00106 hypothetical protein; Provisional
Probab=94.91 E-value=1.2 Score=53.72 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=9.4
Q ss_pred ccchhhhhhccC
Q 001234 901 EDGIHAARKRRV 912 (1118)
Q Consensus 901 ~~~~~agrkrr~ 912 (1118)
--++||||-=||
T Consensus 476 ~yaiqaGREiRv 487 (535)
T PRK00106 476 SFALQAGREIRI 487 (535)
T ss_pred HHHHhcCCeEEE
Confidence 356899998886
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.73 E-value=14 Score=45.09 Aligned_cols=302 Identities=17% Similarity=0.170 Sum_probs=167.1
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001234 144 AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 223 (1118)
Q Consensus 144 ~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~ 223 (1118)
.+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+
T Consensus 81 ~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~---------------------------- 132 (546)
T KOG0977|consen 81 RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA---------------------------- 132 (546)
T ss_pred CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------------
Confidence 4778999999999999999999998888887777766555555443332222
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHH
Q 001234 224 EREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 303 (1118)
Q Consensus 224 E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~ 303 (1118)
++...--|+++.+|...|-+.+.-++-.++.+..=++.....-+...++..+|..+++-++.+...-.+-...+..-+..
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 12223346778888888888888888888887777777777777888888888888888877754433332222222222
Q ss_pred hhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 001234 304 LLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE 381 (1118)
Q Consensus 304 l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~-~EIQKLl-deh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E 381 (1118)
|.- ....=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.++.=.+.|+.++.
T Consensus 213 l~f----------~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 213 LAF----------LKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred HHH----------HHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 211 111222333332222 12221 1111110 0111222233445666666777777777777777665
Q ss_pred hhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001234 382 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSL 461 (1118)
Q Consensus 382 ~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~ 461 (1118)
..=.--+ ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+...+..=++.+...
T Consensus 282 ~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i 351 (546)
T KOG0977|consen 282 TSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEI 351 (546)
T ss_pred hhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 3110000 001111122222222222222233333445555566666666777776666655555544444
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001234 462 SSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 504 (1118)
Q Consensus 462 a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~ 504 (1118)
+.+-++..++.- |...|+-.+.-|--||..||.
T Consensus 352 ~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 352 AKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence 444444444443 444455555788889999985
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.64 E-value=25 Score=47.50 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=76.7
Q ss_pred HHhHHHHHHHHHhhhhhhhhhh-hhh-----h---------------hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001234 132 IASLEKAVHEIRAESAETKVAA-DSK-----F---------------AEARCMVENAQKKFAEAEAKLHAAESLQAEANR 190 (1118)
Q Consensus 132 VadLEKAL~emr~E~AevK~ts-esK-----L---------------aEA~aLv~~~eeKslEvE~KL~aAea~~AEa~R 190 (1118)
|.+|+.+|++.|--.-.||++. +.. + .+-+.|++.| +-.-.|+..|..++..+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4567777777766666666543 111 1 1223333333 2233566666666666666
Q ss_pred chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHh
Q 001234 191 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 270 (1118)
Q Consensus 191 k~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~ 270 (1118)
+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+.+-.+.+.+....+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777776665543322222 222223444444555555555555555555555555555555555
Q ss_pred HhHHHHHHHhhh
Q 001234 271 RKEKELEASRAN 282 (1118)
Q Consensus 271 ~kEkeLEe~kkk 282 (1118)
..+.++..++..
T Consensus 387 elEeeLeeLqeq 398 (1486)
T PRK04863 387 AAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.30 E-value=14 Score=43.30 Aligned_cols=99 Identities=26% Similarity=0.269 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001234 439 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 518 (1118)
Q Consensus 439 ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~ 518 (1118)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++...+.|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 3444444444444444444444443333333333333333333222 233666777777777777777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001234 519 EKAKFEAEWEMIDEKREELRKEAERV 544 (1118)
Q Consensus 519 eKekFE~EWE~LDEKRael~KEa~~I 544 (1118)
+....+.+|..+...++++.++....
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988763
No 50
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.05 E-value=1.1 Score=47.15 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001234 361 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 430 (1118)
Q Consensus 361 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~ 430 (1118)
++...|..++.|+..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666655555555555555555555544443
No 51
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.41 E-value=23 Score=42.66 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=77.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001234 428 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 507 (1118)
Q Consensus 428 sL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke 507 (1118)
.|.+..++|+.-+..|.+-++++..|...++.++.+++..+..+..-+++.......- .-|..++..+|..-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3667777777778888888888888888888888888777777777777665555433 334444444444443
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001234 508 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF 587 (1118)
Q Consensus 508 ~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF 587 (1118)
....+..+.+. .|..|--.-.++..|++....+.. ....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea~----~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEAE----EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211 222222222333333332221111 1224555555555555555554444444444444
Q ss_pred HHhhh
Q 001234 588 MNKMV 592 (1118)
Q Consensus 588 ~~kMe 592 (1118)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44333
No 52
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=38 Score=43.13 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001234 444 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 523 (1118)
Q Consensus 444 ~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF 523 (1118)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++ |.++.++-+. .
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQRe----i 383 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQRE----I 383 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----H
Confidence 356788888899999999999999999999999999999998888888776665544 3333322111 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001234 524 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 581 (1118)
Q Consensus 524 E~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~ 581 (1118)
| -.+-++-.|+.++-.--|+.+++...-|-+|.|. ..|.+|..|+-|-+-
T Consensus 384 E------~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~iv 433 (1118)
T KOG1029|consen 384 E------RQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEWIV 433 (1118)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence 1 1122223334444444556666666666665543 345555555554443
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.53 E-value=47 Score=43.92 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=94.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001234 451 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 530 (1118)
Q Consensus 451 ~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 530 (1118)
..+..++.++..++..-..++.+++..+.+.++|=.-|+-.+..+..-.+.+-....-+++..++.+..--....+...+
T Consensus 475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~ 554 (1293)
T KOG0996|consen 475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL 554 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34566777777888888889999999999999888888888888777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--hhhhhhhhhHHH
Q 001234 531 DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK--RDVDSLNREREE 586 (1118)
Q Consensus 531 DEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~k--relEsL~~ekEs 586 (1118)
--+..++.+++.....+=..+...++.=+.++-.-+..|...-. .=|.+|.+.+++
T Consensus 555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 77777777777766665555555555444444433333332222 235666666664
No 54
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.50 E-value=17 Score=38.83 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=92.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001234 485 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 564 (1118)
Q Consensus 485 R~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~ 564 (1118)
|..-+.|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44566777889999999999999999999999999999999999999999999998887665554443322
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001234 565 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 640 (1118)
Q Consensus 565 EK~~~r~~~krelEsL~~ekEsF~---~kMehErs~~~eKiq~Erad~l~d~EmqkreL-E~~iqkRqEEiE~~L~EREk 640 (1118)
..+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23556666666666554 3444555555544442 233332 22222 33455566666666666665
Q ss_pred HHHH
Q 001234 641 AFEE 644 (1118)
Q Consensus 641 ~FEe 644 (1118)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 55
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=91.75 E-value=4.7 Score=42.56 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=38.1
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001234 379 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 437 (1118)
Q Consensus 379 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le 437 (1118)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|...+..++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777666666666666666555555555553
No 56
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.25 E-value=32 Score=39.36 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=35.3
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 001234 399 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 451 (1118)
Q Consensus 399 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~ 451 (1118)
..|..++..+.++--++-.+.+.+.++=+++++....|-.+-.+|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777777777777777777776666666666666555554
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.66 E-value=30 Score=37.98 Aligned_cols=241 Identities=25% Similarity=0.330 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001234 446 EKEEVNIIKSDL----QKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 521 (1118)
Q Consensus 446 eKEel~~lK~dl----EK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe 521 (1118)
+|++|..|++-+ ++.+ +++.+-..+......+.... ......+..-.-.+|..+|.+-..+..|...|..+..
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEID 78 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence 456666655543 3443 34444444444444444442 3444556677778888888888888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001234 522 KFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD---AMRDQHKRDVDSLNREREEFMNKMVHEHSEW 598 (1118)
Q Consensus 522 kFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~---~~r~~~krelEsL~~ekEsF~~kMehErs~~ 598 (1118)
+...+.+.+-.|-.........+. ++-..|+...+ ..+......+.+|.-+-.-.....+.|-..+
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le-----------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLE-----------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 887777776555444433322222 23333333332 2344455556666655543333444455666
Q ss_pred HHHHHHHHHHhhhhhH-hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001234 599 FTKIQQERADFLLGIE-MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 677 (1118)
Q Consensus 599 ~eKiq~Erad~l~d~E-mqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE 677 (1118)
-..++ ..+.-++. ....+|...|..-+.+.+.....--...+.--...+..|+.........+..++.|...+-..
T Consensus 148 ~~~~~---~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 148 REQIQ---SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp STT-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccc---cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence 66555 33333333 456677777777777777666555555555555666666666666666666666666665555
Q ss_pred HHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001234 678 RMEINMDRQRRDREWAELNNSIEELM 703 (1118)
Q Consensus 678 R~Ei~~~ke~le~e~aEm~kdIeeL~ 703 (1118)
-+.+..+-..+...-+.+.+.|.+|.
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHH
Confidence 54444444444444444444444443
No 58
>PRK12705 hypothetical protein; Provisional
Probab=90.04 E-value=17 Score=43.95 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=33.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001234 362 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 428 (1118)
Q Consensus 362 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 428 (1118)
+...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666555555 44566666666666666666666555555544444443
No 59
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.60 E-value=2.4 Score=52.14 Aligned_cols=67 Identities=30% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHH
Q 001234 262 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQ 329 (1118)
Q Consensus 262 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~le 329 (1118)
+..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.
T Consensus 259 i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~ 325 (722)
T PF05557_consen 259 IRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWE 325 (722)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333322 234566666777777776666666666665555555555555553
No 60
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.27 E-value=63 Score=39.68 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=15.9
Q ss_pred ccccCCCccccCCCCcHHHHHHHHHccCC
Q 001234 9 LAITPSSRVLQSPLSDESIWKRLKEAGLD 37 (1118)
Q Consensus 9 l~~~~g~rv~~~~~~d~~iWkr~~eaG~D 37 (1118)
+++-.|. ++.|-..+-..++-+=|+
T Consensus 30 ~~~i~G~----Ng~GKttll~ai~~~LyG 54 (650)
T TIGR03185 30 IILIGGL----NGAGKTTLLDAIQLALYG 54 (650)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHhcC
Confidence 4444454 678888888777765333
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.13 E-value=67 Score=39.81 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=118.8
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001234 259 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 338 (1118)
Q Consensus 259 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~ 338 (1118)
+....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34445666667777777776666666665555555555555444444444444444444444443322221110000 2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001234 339 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418 (1118)
Q Consensus 339 EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 418 (1118)
.+|.+++. -..|..++..+.+..|.-+.++++.=+... ..++-+.-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~--------------~~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKA--------------SNRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence 22333322 233445555555556655555544332222 222222333344444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001234 419 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 489 (1118)
Q Consensus 419 sk~LKEkEksL~aeEK~le~e---------k~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~l 489 (1118)
...++.|+...+...+.++.- ...++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444444333321 23445556678888999999999999999999999999999998888887
Q ss_pred HHHHH
Q 001234 490 VLEIK 494 (1118)
Q Consensus 490 rLQse 494 (1118)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 76666
No 62
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.74 E-value=1.1e+02 Score=40.78 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001234 691 EWAELNNSIEELMVQRQKLEEQRQLLHAD 719 (1118)
Q Consensus 691 e~aEm~kdIeeL~~ls~KLk~QRE~~~~E 719 (1118)
--.|++| +-+|..++.+|...|....++
T Consensus 1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 3457788 899999999998887655544
No 63
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.60 E-value=1.2e+02 Score=40.71 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=105.0
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhhHHHHHHHHhhhhhhhhHhHH
Q 001234 227 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV 302 (1118)
Q Consensus 227 ~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~k----EkeLEe~kkkie~~~~~Lk~ke~dl~~rl~ 302 (1118)
|..--.+|..-+-+|....--+.-+.. |-++-+++.+....++.. ..-|+++.......-.+++.-..+|...-.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444445555555555554444443332 334444555444443332 334666666666666666666666665555
Q ss_pred HhhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 001234 303 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 373 (1118)
Q Consensus 303 ~l~~rEe~~~~~~-------~~Le~KEkELl~leEKL--~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEl 373 (1118)
.|+.-.+++...+ ..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5555444443333 44444454444444443 356677888888765554444556666 7777666666666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhh----hhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001234 374 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 436 (1118)
Q Consensus 374 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l 436 (1118)
+.|..... .-..+=++|..+ -.+-+.++..|++.|-.+..+..+|.-+...|--.++++
T Consensus 1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 55543221 111112222222 123345566666666666665555555555555555544
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.90 E-value=71 Score=36.58 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=112.6
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001234 401 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 480 (1118)
Q Consensus 401 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki 480 (1118)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+..++....+.+..+..++.+....+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 34455566666666777777766666655555555555555555555555555555555555555555444444333322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001234 481 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 560 (1118)
Q Consensus 481 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 560 (1118)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24566555555444 34445556667888999999999999999999999999998888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 001234 561 SLRQERDAMRDQH 573 (1118)
Q Consensus 561 rLK~EK~~~r~~~ 573 (1118)
+|+..-..++...
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 65
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.67 E-value=0.24 Score=60.38 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001234 496 KEELDVVRAQKLELMVETDKLQLEKAKFEAEW 527 (1118)
Q Consensus 496 KeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 527 (1118)
+..+..+=.|+..+.+|.|-|+++-..|+.|=
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344444567778889999999999998874
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.10 E-value=72 Score=36.17 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001234 498 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 530 (1118)
Q Consensus 498 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 530 (1118)
+|+.++.+...+....+.+..++..+..+=..+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444333333
No 67
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.27 E-value=1.7e+02 Score=38.78 Aligned_cols=134 Identities=20% Similarity=0.272 Sum_probs=88.6
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001234 133 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 212 (1118)
Q Consensus 133 adLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRe 212 (1118)
.+.++.|.....++-. ..-|++.+..=+.....|.-++..|+-.-+|+.+++......-+..+...-+.-++++|+
T Consensus 277 ~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re 352 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE 352 (1074)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444432 233455566666666666666666777777777777778888888888888888889998
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHH-HHHhhhhhhhhHhhHhhHHHHh
Q 001234 213 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSKLQELS 270 (1118)
Q Consensus 213 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL-~e~q~~LNqREe~~~e~~~~l~ 270 (1118)
-.-+..+..-.+..|.+-+......+|.+-..+.++ -.++..+-++++.++-..+.+.
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve 411 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE 411 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 888888877777777777777777777777777666 4455445555555444443333
No 68
>PRK09039 hypothetical protein; Validated
Probab=82.95 E-value=79 Score=36.42 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=72.9
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001234 121 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 200 (1118)
Q Consensus 121 LkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~ 200 (1118)
|=-.|+.+...-++|+-.|.+|+..+.. +...-+.+....++...-..+++..+....+.+++.--.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778999999999999999999998872 233333333333322222335666666666666666666677777777
Q ss_pred HHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHH
Q 001234 201 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 238 (1118)
Q Consensus 201 eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ewe 238 (1118)
-+-+.=.+||.++.++.++..+.+......+..+.+.+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666665544433333333
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.29 E-value=63 Score=33.09 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=66.5
Q ss_pred HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001234 187 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 266 (1118)
Q Consensus 187 Ea~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~ 266 (1118)
.|.-+...++-++++++.+-..+-.++.||..=..-.|.++..-...|.+-...|.++..+..... ...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667777888888888888888888888888888888888888888888888887776554 334
Q ss_pred HHHhHhHHHHHHHhhhHHHHH
Q 001234 267 QELSRKEKELEASRANVEEKF 287 (1118)
Q Consensus 267 ~~l~~kEkeLEe~kkkie~~~ 287 (1118)
+-+..+|.+|+.+.+++..+.
T Consensus 80 rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666665443
No 70
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.45 E-value=1.2e+02 Score=37.64 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=38.3
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHh--------hhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001234 152 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE--------RKLQEVVAREDDLSRRIASFKADCEEK 223 (1118)
Q Consensus 152 tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~ae--------rKL~eVEaRE~~LrRerlSf~~E~ea~ 223 (1118)
..+.|...+..-..-+.+...++..+|.+|++.++.--+++.... .+|.++..+-...+-++....+-....
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666777777777777777666655443322 344444444444444444444333333
No 71
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=80.95 E-value=2.2e+02 Score=38.42 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCCCccccccccCCCCCCCcccceeeeeeeeeeeceee
Q 001234 969 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTC 1007 (1118)
Q Consensus 969 ~~~~~~~~~~~s~nqtqg~~ee~~~~~~d~ii~isevtc 1007 (1118)
-.|+++-+...+..+-.++ .-.=+|-|++.|||-.||-
T Consensus 1127 V~~s~~~~l~~~~~~~k~~-~~~~il~i~k~~~v~~vt~ 1164 (1317)
T KOG0612|consen 1127 VIVSSKKILFYVSEQDKEQ-SGPLILDIKKLFHVRQVTQ 1164 (1317)
T ss_pred EeecccceEeeeccccccc-cchhhhhhhhceeEEeecc
Confidence 3566777777777777773 2234667889999999974
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.95 E-value=1.7e+02 Score=37.15 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHH-HHhhhhHHHHhhhhH
Q 001234 362 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 423 (1118)
Q Consensus 362 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdl~~Ksk~LK 423 (1118)
+-++++.+|.|++.-++++-.+|-.+..+|..+ ..++.. +|-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555566666666666666666666666555 222333 445556665555553
No 73
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.64 E-value=2.3e+02 Score=38.42 Aligned_cols=121 Identities=23% Similarity=0.224 Sum_probs=77.5
Q ss_pred hhhhccccchhheehhhhhhhHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHH
Q 001234 65 IFEHQHHMGLLILEKKELASKYEQIKASA--EAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEI 142 (1118)
Q Consensus 65 lydYQynMGLLLiEkKEwtSK~EeLkqa~--~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~em 142 (1118)
--|=-|.+|.|- .-|+ |+. +.+ ..|..... .--|++.+.|=.-|.-.+..=..=++.|+..+..+
T Consensus 709 ~~dG~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L 775 (1353)
T TIGR02680 709 DVDGRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRAL 775 (1353)
T ss_pred CCCCceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888875 7788 654 222 22222222 23455666666667777777677777888888888
Q ss_pred HhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001234 143 RAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 200 (1118)
Q Consensus 143 r~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~ 200 (1118)
..+.+. |.++.-|..|+..+..+......+..++..|+..++.+-+....+.+.+.
T Consensus 776 ~~e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~ 831 (1353)
T TIGR02680 776 ADELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELE 831 (1353)
T ss_pred HHHHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777 77778888888888777666666666666666555555554444444433
No 74
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=80.21 E-value=44 Score=32.20 Aligned_cols=89 Identities=26% Similarity=0.292 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001234 369 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 448 (1118)
Q Consensus 369 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKE 448 (1118)
+...|..|+.+...++..+..++..|.++++.|....-.+..-=++-+. ...-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888888888888888888888777666544333333 333334444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 001234 449 EVNIIKSDLQKSLSSLDEK 467 (1118)
Q Consensus 449 el~~lK~dlEK~~a~~e~q 467 (1118)
+|..+..+|..+.+.+..-
T Consensus 82 ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655554433
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.17 E-value=2.5e+02 Score=38.64 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhh-hhhHH-HHHHHHHhhhhHH---HHHhhhhhhH---HH---HHHhcchhHHhhhhHHHh
Q 001234 135 LEKAVHEIRAESAETKVAADS-KFAEA-RCMVENAQKKFAE---AEAKLHAAES---LQ---AEANRYHRSAERKLQEVV 203 (1118)
Q Consensus 135 LEKAL~emr~E~AevK~tses-KLaEA-~aLv~~~eeKslE---vE~KL~aAea---~~---AEa~Rk~s~aerKL~eVE 203 (1118)
+-+|+..|++-..+.+.|-+. |.... ..|...+=..+.- ++= |..|.- .+ +-.-.+..++.++|..++
T Consensus 228 v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~kkLe~tE 306 (1486)
T PRK04863 228 VRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSRRQLAAEQ 306 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888776543 22221 1122111111111 000 111100 00 222244566667777777
Q ss_pred hhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHH
Q 001234 204 AREDDLSRRIASFKADCEEKEREIIRERQSLSDR 237 (1118)
Q Consensus 204 aRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ew 237 (1118)
.+-..+.... .|.+.....+.++.+....|
T Consensus 307 ~nL~rI~diL----~ELe~rL~kLEkQaEkA~ky 336 (1486)
T PRK04863 307 YRLVEMAREL----AELNEAESDLEQDYQAASDH 336 (1486)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 6666665544 34444444555555555555
No 76
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.86 E-value=1.6e+02 Score=36.29 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Q 001234 663 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 709 (1118)
Q Consensus 663 E~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KL 709 (1118)
.+.++.-++..++++..++..+...+.++...++++|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666666655544443
No 77
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.18 E-value=78 Score=35.00 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001234 633 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 712 (1118)
Q Consensus 633 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 712 (1118)
..++.+-..|+.-+..-++.+.+++..- +=+++..-|+..|..|| ...-+++-.|+.||..|.+.=+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888887776654 44555555555555555 455677888899999999888888877
Q ss_pred HHHHH
Q 001234 713 RQLLH 717 (1118)
Q Consensus 713 RE~~~ 717 (1118)
|....
T Consensus 76 r~~~~ 80 (230)
T PF10146_consen 76 RNKRQ 80 (230)
T ss_pred HHHHH
Confidence 76643
No 78
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=78.03 E-value=1.1e+02 Score=37.43 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=42.3
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001234 410 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 479 (1118)
Q Consensus 410 EKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 479 (1118)
+++++++.+-.-...||..-....+..+..+.++....+++...+..+++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455555555555556666666666666666666666666666666666666666665555555554433
No 79
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.44 E-value=85 Score=34.42 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001234 449 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 528 (1118)
Q Consensus 449 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 528 (1118)
+|-.|+..+--.++.+.....++......+..- . -|++.|-.+-.-...|++-|+..-..++.|.-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555444433221 1 24444444444455555555555555555554
Q ss_pred hhHHHHHHH---HHHHH------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 001234 529 MIDEKREEL---RKEAE------RVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 599 (1118)
Q Consensus 529 ~LDEKRael---~KEa~------~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~ 599 (1118)
.|..--+.+ ....- ....++.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 00000 00000100 011223334333333 34555667788999999999999997
Q ss_pred H
Q 001234 600 T 600 (1118)
Q Consensus 600 e 600 (1118)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.03 E-value=1.6e+02 Score=34.21 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=12.0
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHH
Q 001234 575 RDVDSLNREREEFMNKMVHEHSEWFTKIQ 603 (1118)
Q Consensus 575 relEsL~~ekEsF~~kMehErs~~~eKiq 603 (1118)
+.+..|..+|-...+.|++|+.-++.+++
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~ 141 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQ 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444444444333333
No 81
>PLN03188 kinesin-12 family protein; Provisional
Probab=74.96 E-value=92 Score=41.77 Aligned_cols=151 Identities=25% Similarity=0.294 Sum_probs=89.1
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHH-HH------hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Q 001234 116 KREESLKKTLGVEKECIASLEKAVHE-IR------AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 188 (1118)
Q Consensus 116 KREEnLkKALgvEKqCVadLEKAL~e-mr------~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa 188 (1118)
-+-|.|+--|..||.|...|.-||+- |. +-||+.-=..-.=|+--+.++++|. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 45578999999999999999999963 32 3333332222222333333333332 223333322
Q ss_pred hcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH--------------HHHHHHHhhh
Q 001234 189 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE--------------HERLLDAQTL 254 (1118)
Q Consensus 189 ~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~--------------eerL~e~q~~ 254 (1118)
.+|.. + -|=+.+|.+|.-+...+-.++|+.|++=-|.||.- ==||-++..-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 23344555566666666666777777666666532 1244455555
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhh
Q 001234 255 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 292 (1118)
Q Consensus 255 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 292 (1118)
+.-=+++++.-.++-...-|.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777788777888888888888888777776
No 82
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.02 E-value=1.1e+02 Score=33.90 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001234 448 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 526 (1118)
Q Consensus 448 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 526 (1118)
+.|..+..+..+....+......+..--+++++.++++..|-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999999999999999999888888888888777776666655555555444444433
No 83
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=73.83 E-value=1.8e+02 Score=33.66 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 001234 620 LENCIEKRREELESSFREREKAFEE 644 (1118)
Q Consensus 620 LE~~iqkRqEEiE~~L~EREk~FEe 644 (1118)
-|..+-.+..+++..|..+.++.+.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777665543
No 84
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.72 E-value=2.4e+02 Score=35.10 Aligned_cols=275 Identities=21% Similarity=0.280 Sum_probs=124.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001234 358 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 437 (1118)
Q Consensus 358 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le 437 (1118)
||+|+-.-|+.+++- ..+....|-.+.+-...++.-..++.++++++.+==..+..+...|...+-++.
T Consensus 90 ye~El~~ar~~l~e~-----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 90 YEAELATARKLLDET-----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred hhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 555555555555543 223333333344444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001234 438 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 517 (1118)
Q Consensus 438 ~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk 517 (1118)
.-+...-.=-+++.-||.+...+...|..=+.+++.|. --|.++.---..|.++|+-+..+=.. ++.
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~~~h~~------eI~ 225 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLKRIHKQ------EIE 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhccHH------HHH
Confidence 33333333344555556666666666655555555443 11233333334466666655433221 223
Q ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh-----------hhH
Q 001234 518 LEKAKFEAEW--EMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN-----------RER 584 (1118)
Q Consensus 518 ~eKekFE~EW--E~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~-----------~ek 584 (1118)
+++.+|..+- +.=|+=+.+|..=+.+|-.+=++. .+.=+.+++.-|++.+..++ ..|
T Consensus 226 e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~----------~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~r 295 (546)
T KOG0977|consen 226 EERRKARRDTTADNREYFKNELALAIREIRAQYEAI----------SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAR 295 (546)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 3344444443 222333333443333333322222 22223334444444444443 233
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001234 585 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL 664 (1118)
Q Consensus 585 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~ 664 (1118)
|+... |. ..|-.=|++ |.|+|-.-. .+.++.+.++..|.+=-+.|+..=..- ..+|
T Consensus 296 EEl~~-~R-------~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i 351 (546)
T KOG0977|consen 296 EELRR-IR-------SRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEI 351 (546)
T ss_pred HHHHH-HH-------hcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHH
Confidence 33221 11 111111111 124444333 455677788888888888888643221 2345
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhH
Q 001234 665 EQVTLEIKRLDLERMEINMDRQRRDR 690 (1118)
Q Consensus 665 Eev~lE~~rLekER~Ei~~~ke~le~ 690 (1118)
..|.-|+..|-.|.+.+--.+.-|+-
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHh
Confidence 55666666666666666555555554
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.58 E-value=1.9e+02 Score=33.97 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHh
Q 001234 158 AEARCMVENAQKKFAEAEAKLHAAESLQAEAN 189 (1118)
Q Consensus 158 aEA~aLv~~~eeKslEvE~KL~aAea~~AEa~ 189 (1118)
..+.....-++....+++.+|..|+..+..--
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555443
No 86
>PRK09039 hypothetical protein; Validated
Probab=73.41 E-value=1.8e+02 Score=33.60 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001234 470 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 520 (1118)
Q Consensus 470 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eK 520 (1118)
++..-...|..++..-.+-..-=..|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666666777888888888666666666655544
No 87
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.21 E-value=1.9e+02 Score=33.69 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=105.8
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001234 509 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE----RVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 584 (1118)
Q Consensus 509 LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eE----re~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 584 (1118)
|..+-.-||.+-..+-..|-.|-+.-..|+..+-.|.-. =|-++..+..=-+.|+++|..+--.|.++=|.|.-.=
T Consensus 32 L~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L 111 (310)
T PF09755_consen 32 LQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDL 111 (310)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443322 2333333444467899999999888888877776554
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhhhhhhHHHHHH
Q 001234 585 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER---EKAFEEEKMREFQQISSLKEKAE 661 (1118)
Q Consensus 585 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~ER---Ek~FEeek~~EL~~IN~lkE~a~ 661 (1118)
-.=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.+++ |.+.|.+-+ +|-..+-
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE-------~lvN~L~ 184 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE-------ALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHH
Confidence 445778889999999999999999988888888888888888888888655554 233333332 3444567
Q ss_pred HHHHHHHHHHHHhHHH
Q 001234 662 KELEQVTLEIKRLDLE 677 (1118)
Q Consensus 662 kE~Eev~lE~~rLekE 677 (1118)
+-|.++..|...|+..
T Consensus 185 Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888777765
No 88
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=73.12 E-value=1.1 Score=54.84 Aligned_cols=154 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHH-------h----chHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhh
Q 001234 197 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRER-------Q----SLSDRKKILQQEHERLLDAQTLLNEREDHILSK 265 (1118)
Q Consensus 197 rKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qR-------e----~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~ 265 (1118)
.+.++++..-..|+.++-++..+.......+..-- . .+.++..++...++.+......+..=+.++...
T Consensus 193 q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~l 272 (713)
T PF05622_consen 193 QRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEEL 272 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777766655444333211 1 123334444444443332221122222223333
Q ss_pred HHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHH
Q 001234 266 LQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA 345 (1118)
Q Consensus 266 ~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLld 345 (1118)
...+..+..+.+++...-+ +..+|+++-|-+..+...+...|.++...+..|+ ++-.+. ..+ +.|.
T Consensus 273 e~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLe----d~~~lk--------~qv-k~Le 338 (713)
T PF05622_consen 273 EKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVEKYKKKLE----DLEDLK--------RQV-KELE 338 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--------HHH-HHHH
Confidence 3334444444444433332 4566777777776666666666666555554333 222222 122 4567
Q ss_pred HhHHHHhhhhhhHHHHHHH
Q 001234 346 NHESALRVKQSEFEAELAI 364 (1118)
Q Consensus 346 eh~a~L~~Kk~EFElElE~ 364 (1118)
++++.|--.+..+|-++..
T Consensus 339 e~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 339 EDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777743
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=72.59 E-value=1.3e+02 Score=31.37 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=64.6
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001234 473 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 552 (1118)
Q Consensus 473 ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 552 (1118)
+-.+.|+.++.+.+=+-.-=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444333322345567788888888999999999999999999999999999999999999997777776
Q ss_pred Hhhhhhhh
Q 001234 553 KSLKDERD 560 (1118)
Q Consensus 553 k~~~~E~e 560 (1118)
+.+.....
T Consensus 87 k~lq~~q~ 94 (140)
T PF10473_consen 87 KELQKKQE 94 (140)
T ss_pred HHHHHHHH
Confidence 66554433
No 90
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.34 E-value=67 Score=36.62 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=9.2
Q ss_pred HHHHHHHhhHHHHHHH
Q 001234 690 REWAELNNSIEELMVQ 705 (1118)
Q Consensus 690 ~e~aEm~kdIeeL~~l 705 (1118)
-.|.||+-=...+.-|
T Consensus 166 V~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 166 VEWNEINAAWGQTALL 181 (314)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 3788888766655443
No 91
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=69.50 E-value=3.3e+02 Score=34.95 Aligned_cols=324 Identities=17% Similarity=0.247 Sum_probs=148.8
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH----
Q 001234 198 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE---- 273 (1118)
Q Consensus 198 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kE---- 273 (1118)
||++.-..-..|..+ +..|+-.+|++++.----+.+-+-+++...--|.+.|..+|+=++..+.-...|+...
T Consensus 216 KlKE~~~k~~~leee---y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe 292 (786)
T PF05483_consen 216 KLKEDYEKFEDLEEE---YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQE 292 (786)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 444433333333332 3456666666655544444455555555555555555555555555555555554444
Q ss_pred ---HHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhh----hHHHHHHHHHHHHHhHHhHHHHHHHHhhhh---hHHHHHH
Q 001234 274 ---KELEASRANVEEKFKALNEEKSNLDLTLVSLLK----REEAVIEREASLQKKEQKLLVSQETLASKE---SNEIQKI 343 (1118)
Q Consensus 274 ---keLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~----rEe~~~~~~~~Le~KEkELl~leEKL~aRE---~~EIQKL 343 (1118)
.+|+.++..+..+-.+-+.-+.++......+.. +|-.+.............+..|+-+++.=. +.++|.+
T Consensus 293 ~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~ 372 (786)
T PF05483_consen 293 HLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRL 372 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444444333333333333333222221 111222222233333334445555544322 2344443
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhh------hhHHHhHHHHHHhhhhHHH
Q 001234 344 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE------HDLEVQSRALVDKEKDLVE 417 (1118)
Q Consensus 344 ldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE------qaLe~k~~~lkEKEkdl~~ 417 (1118)
-. ++....-+=+||..+-..+++..+.+.. +|+++...-.-|++.. ..+++-.+.|+..+.+|..
T Consensus 373 ~~-----~ed~lk~l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~ 443 (786)
T PF05483_consen 373 KK-----NEDQLKILTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTG 443 (786)
T ss_pred HH-----hHHHHHHHHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222233344555555555555544332 2333322222222222 3355555555556665554
Q ss_pred HhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-------hhhhhhhHHH
Q 001234 418 RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-------MKSEAGELSV 490 (1118)
Q Consensus 418 Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki-------teeER~E~lr 490 (1118)
. |.-.++.+.-.+-.| -...+.=..+-..++.++..++++..+-.+-..+... +.-+++...-
T Consensus 444 l---lq~~ekev~dLe~~l-------~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~ 513 (786)
T PF05483_consen 444 L---LQIREKEVHDLEIQL-------TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMAL 513 (786)
T ss_pred H---HHhhhhHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 333344444444333 3333333333333334444444333222222111111 1112222222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001234 491 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 543 (1118)
Q Consensus 491 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~ 543 (1118)
==.++.+-|...+.|.+-++++++.|......+-.|.+.+-+.-+.-.-|.++
T Consensus 514 elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 514 ELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356778888999999999999999888888877777766655444444444
No 92
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.42 E-value=1.3e+02 Score=30.27 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=55.5
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001234 401 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 479 (1118)
Q Consensus 401 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 479 (1118)
|.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555666666655554444 447888889999999999999999999999999888888776
No 93
>PRK12705 hypothetical protein; Provisional
Probab=68.73 E-value=2.9e+02 Score=34.02 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001234 355 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418 (1118)
Q Consensus 355 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 418 (1118)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...|..+++++..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444332 222444444444444444444444444444444444444433
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.03 E-value=80 Score=35.99 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001234 484 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 517 (1118)
Q Consensus 484 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk 517 (1118)
+.+.+..-...+.++.+.+-.|........|.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666777777777777777777765
No 95
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=65.56 E-value=1.7e+02 Score=35.76 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001234 497 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 576 (1118)
Q Consensus 497 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 576 (1118)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++-.+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888888888877777776665544 45556666666666666666
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 001234 577 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 628 (1118)
Q Consensus 577 lEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRq 628 (1118)
-+.++.+.-+.-. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 5555544433322 33477777666655554443
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.42 E-value=2.1e+02 Score=30.79 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=51.8
Q ss_pred hhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhh
Q 001234 256 NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASK 335 (1118)
Q Consensus 256 NqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aR 335 (1118)
.+...++......+....+.++..+..++.-+..|......+...-.......+.+......+...+..+..++..+..+
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 145 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARR 145 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555553333334444555666667777777777777777777
Q ss_pred hhHHHHHHHH
Q 001234 336 ESNEIQKIIA 345 (1118)
Q Consensus 336 E~~EIQKLld 345 (1118)
-+.-++.|..
T Consensus 146 r~~l~~~l~~ 155 (302)
T PF10186_consen 146 RRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHH
Confidence 7666665543
No 97
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=63.93 E-value=4.5e+02 Score=34.49 Aligned_cols=370 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHH---HHHHHHHHHHHhhhh
Q 001234 309 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE---DEIEKKRRAWELRDL 385 (1118)
Q Consensus 309 e~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~e---eEle~K~~~~E~rEv 385 (1118)
+.+...+--|.-.+..|.+||-++.-+|.. -.-|++-.+.+..-+.+-|.|||+-+--++ ++|-.|+.++--.=-
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~e--kq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEME--KQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001234 386 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 465 (1118)
Q Consensus 386 el~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e 465 (1118)
+|+..=..|..-+-.+..++....+..+.+..|++.++|- ...+.++-.+-...+-..-.+-
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~------------------~~~nD~~sle~~~~q~~tq~vl 231 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKED------------------LIEKDQKSLELHKDQENTQKVL 231 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhcchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001234 466 EKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 545 (1118)
Q Consensus 466 ~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 545 (1118)
....|+.--.+-|....-.- +.|++..+-+-+--.+|..-.-+|+.-......|--.-.+--.+++.++....
T Consensus 232 ~ev~QLss~~q~ltp~rk~~-------s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 232 KEVMQLSSQKQTLTPLRKTC-------SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHHhHhhhhhHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH-------HHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhh
Q 001234 546 VER-------VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKR 618 (1118)
Q Consensus 546 eEr-------e~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~Emqkr 618 (1118)
.-| +--.+|++.|--.|+.++.++|-..... ++.=|+|-++.. |+|-++-
T Consensus 305 qt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa----rrk~egfddk~~-------------------eLEKkrd 361 (1265)
T KOG0976|consen 305 QTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA----RRKAEGFDDKLN-------------------ELEKKRD 361 (1265)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcchhHHHH-------------------HHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhh
Q 001234 619 DLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 698 (1118)
Q Consensus 619 eLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kd 698 (1118)
.++++...-++-.+..=.+.-...+..-+++ +.|.-||..+-+ +++.+----....|-++....-..+..+....-.-
T Consensus 362 ~al~dvr~i~e~k~nve~elqsL~~l~aerq-eQidelKn~if~-~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q 439 (1265)
T KOG0976|consen 362 MALMDVRSIQEKKENVEEELQSLLELQAERQ-EQIDELKNHIFR-LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ 439 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh-hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001234 699 IEELMVQRQKLEEQRQLLHADREEIQAESERL 730 (1118)
Q Consensus 699 IeeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl 730 (1118)
.+-..+|-.--+--|+--+.--+..++||.-+
T Consensus 440 ~s~fk~Lke~aegsrrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 440 LSNFKVLKEHAEGSRRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred HhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHH
No 98
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=63.71 E-value=1.7e+02 Score=32.33 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=52.1
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH
Q 001234 167 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 246 (1118)
Q Consensus 167 ~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee 246 (1118)
|+.+..+.+.+|...+.....++........+...++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555555555555555555555444444444444444433333333222222211111222222333
Q ss_pred HHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHH
Q 001234 247 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 287 (1118)
Q Consensus 247 rL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~ 287 (1118)
.+.+.+..+.+-.+-...++.....++.+|..++.....+.
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555556655555444443
No 99
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.55 E-value=5.1e+02 Score=34.69 Aligned_cols=131 Identities=21% Similarity=0.156 Sum_probs=79.2
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001234 401 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL-------QKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 473 (1118)
Q Consensus 401 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L-------~~eKEel~~lK~dlEK~~a~~e~q~~qi~e 473 (1118)
|.++.+-|.+.=.++....-.|...+|.|.-+.+++..+.... ..+.+.+..+-.......+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433332222 224445555555555555666666666666
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001234 474 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 531 (1118)
Q Consensus 474 e~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 531 (1118)
....|.-..-|.+-+.-+-.+||+.+-+|=-|-..+..=++.|.+.+-..|.|-..|=
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666666666788888888888888888888888888888888877664
No 100
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.43 E-value=73 Score=35.74 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=67.1
Q ss_pred hhhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001234 485 AGELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER 559 (1118)
Q Consensus 485 R~E~lrLQ-----seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~ 559 (1118)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34455566 899999999999999999999999999999999999999999999999988887665543 466
Q ss_pred hhhHHHHHHHHH
Q 001234 560 DSLRQERDAMRD 571 (1118)
Q Consensus 560 erLK~EK~~~r~ 571 (1118)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766555543
No 101
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=61.95 E-value=2.4e+02 Score=32.82 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001234 453 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 532 (1118)
Q Consensus 453 lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 532 (1118)
|-..|+.-...|.+---+++.+..+|..-..++.|+.+ ....+=|+.+++|..+|+..++ .+|+++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455566666777778899999999999999999998 4567889999999999987665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001234 533 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 584 (1118)
Q Consensus 533 KRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 584 (1118)
+--.|..=+.+|..==.-++|+++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777766554 678888888888888877643
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=61.88 E-value=3.6e+02 Score=32.68 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001234 449 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 526 (1118)
Q Consensus 449 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 526 (1118)
.|...+..|+--++.+..........+.+|..+..|+.. +..+|-.++..-+...++|-+.+..|+.+.++-|.+
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333344444444444555566666555543 446777777777888888888888888888776654
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.78 E-value=2e+02 Score=32.01 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=55.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 001234 478 LEAMKSEAGELSVLEIKLKEELDVVRAQKL---ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK- 553 (1118)
Q Consensus 478 LkiteeER~E~lrLQseLKeEId~~R~Qke---~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek- 553 (1118)
++-...=..+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666777777777777666543 3456667777777777766666666666666555555554444322
Q ss_pred --hhhhhhhhhHHHHHHHHHH
Q 001234 554 --SLKDERDSLRQERDAMRDQ 572 (1118)
Q Consensus 554 --~~~~E~erLK~EK~~~r~~ 572 (1118)
.++.|...||.+-+.||..
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2234555555555555544
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.54 E-value=2.9e+02 Score=31.11 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001234 344 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 415 (1118)
Q Consensus 344 ldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 415 (1118)
||-...-|..+..++.-.|.. +..++..-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k----~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKK----AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333332 33455566666667777777777777766666655555554444444
No 105
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.79 E-value=1.4e+02 Score=37.49 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=50.1
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001234 471 VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 545 (1118)
Q Consensus 471 i~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 545 (1118)
+..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|..-..|++++..=.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666677777777888888888888888877776 455566777888888888887776544
No 106
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.13 E-value=24 Score=38.25 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHHHHHHHhccCCCCccccc
Q 001234 813 WIKRFADLVFKHSGENSVEND 833 (1118)
Q Consensus 813 WlrKCTskIFk~SP~Kk~~~~ 833 (1118)
||++.+.+|=+++==++...|
T Consensus 69 wLq~~v~kinnlglF~s~~NH 89 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANH 89 (224)
T ss_pred HHHHHHHHhhcccccCCCcce
Confidence 999999999777655555555
No 107
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.00 E-value=2.5e+02 Score=34.82 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=70.6
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001234 198 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 277 (1118)
Q Consensus 198 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 277 (1118)
...|.++||+.++ ..|....+-.-..+..-.--......-.+-...||.-.........+.+.+..+.+.+++.+|+
T Consensus 403 ~~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 403 ESPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred cCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888885533 3444444433333333333333334444445555555555556666778888889999999999
Q ss_pred HHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHH
Q 001234 278 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 315 (1118)
Q Consensus 278 e~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~ 315 (1118)
..+..-+.-+..+-+--..++.+|+ ...++++.++
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~---~Q~eeI~~LK 514 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLA---KQREEIQTLK 514 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9999999998888887777766554 3444555544
No 108
>PRK10698 phage shock protein PspA; Provisional
Probab=53.80 E-value=3.3e+02 Score=29.76 Aligned_cols=133 Identities=19% Similarity=0.211 Sum_probs=74.5
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHh
Q 001234 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQK 101 (1118)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lK 101 (1118)
.||+||..+. ++..--+--|+. .|--+|-.++.. |.+ ++++++.+.--.|
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~-----l~~---------------------~r~alA~~~A~~k 55 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDT-----LVE---------------------VRSTSARALAEKK 55 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHH-----HHH---------------------HHHHHHHHHHHHH
Confidence 4899999876 566666777999 666778888887 443 4555555555555
Q ss_pred hhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001234 102 HDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181 (1118)
Q Consensus 102 REqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 181 (1118)
+-.--+--+-..+.+++.--+.||.-=.+=.|- .||.+ +..+++.-.....-+......++.+.......+.|+..|
T Consensus 56 ~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr--~AL~~-K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 56 QLTRRIEQAEAQQVEWQEKAELALRKEKEDLAR--AALIE-KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555556666555555433322221 22221 112222223444445556666666666666666666555
Q ss_pred hHHHHH
Q 001234 182 ESLQAE 187 (1118)
Q Consensus 182 ea~~AE 187 (1118)
.++.-.
T Consensus 133 k~k~~~ 138 (222)
T PRK10698 133 RARQQA 138 (222)
T ss_pred HHHHHH
Confidence 554433
No 109
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=52.54 E-value=2e+02 Score=33.86 Aligned_cols=220 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCccc---ccCCCccccCCCCcHHHHHHHHHccC-ChHHHhhhcHHHHHHHHHHhhhhhcchhh-------------
Q 001234 3 SPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAALIAYIAKLETECYILKI------------- 65 (1118)
Q Consensus 3 ~p~~~~l~---~~~g~rv~~~~~~d~~iWkr~~eaG~-De~S~~rrD~~aLia~IskLE~E~~~~~l------------- 65 (1118)
+|-.|.+. |..|+.|-.+. ..=+|....+ -.-..-.-...+|-+.+++|+++ +
T Consensus 64 ~~~~G~v~~i~V~eG~~V~~G~-----~L~~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~-----~~~~~~~~~~f~~~ 133 (457)
T TIGR01000 64 STSNNAIKENYLKENKFVKKGD-----LLVVYDNGNEENQKQLLEQQLDNLKDQKKSLDTL-----KQSIENGRNQFPTD 133 (457)
T ss_pred cCCCcEEEEEEcCCCCEecCCC-----EEEEECchHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCCcCCCC
Q ss_pred --hhhccccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhh-hHHH-------HHHhH
Q 001234 66 --FEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG-VEKE-------CIASL 135 (1118)
Q Consensus 66 --ydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALg-vEKq-------CVadL 135 (1118)
+.|+..+-...-+..-+.+.+.+.++.+......+..+.+..-..+..+..+-.+++..+. ++++ -...|
T Consensus 134 ~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (457)
T TIGR01000 134 DSFGYRNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSL 213 (457)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHH
Q ss_pred HH----HHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh-HHH
Q 001234 136 EK----AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED-DLS 210 (1118)
Q Consensus 136 EK----AL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~-~Lr 210 (1118)
.+ .+..++.+...--+.+. .++++..-+..+.....++...+..+.+.++- ++-++++.++..+..... ...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 290 (457)
T TIGR01000 214 YENYQAQLKSASDKDQKNQVKST-ILATIQQQIDQLQKSIASYQVQKAGLTKSTAS--NYASSQNSKLAQLKEQQLAKVK 290 (457)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCCccc--hhhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHhHhhhhhhhHHHHHHHHHhchH
Q 001234 211 RRIASFKADCEEKEREIIRERQSLS 235 (1118)
Q Consensus 211 RerlSf~~E~ea~E~~~~~qRe~L~ 235 (1118)
.+.-...++....+.++..-+..|.
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 110
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.10 E-value=4.1e+02 Score=29.98 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=55.1
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001234 510 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 589 (1118)
Q Consensus 510 lkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~ 589 (1118)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444445555555556666666666666666666666666666666666555543 45667788888888
Q ss_pred hhhhhhhhHHHHHH
Q 001234 590 KMVHEHSEWFTKIQ 603 (1118)
Q Consensus 590 kMehErs~~~eKiq 603 (1118)
+|.-+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 88876666666554
No 111
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=50.64 E-value=5.5e+02 Score=31.37 Aligned_cols=111 Identities=21% Similarity=0.189 Sum_probs=60.6
Q ss_pred HHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHh
Q 001234 212 RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN 291 (1118)
Q Consensus 212 erlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk 291 (1118)
+..+-.++..+-..++.+-|..|..---.-.....+..+.... +..+...+..+-.+|..++.-++..+.+-.
T Consensus 124 q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~-------a~~~~~kve~L~~Ei~~lke~l~~~~~a~~ 196 (522)
T PF05701_consen 124 QYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSA-------AEENEEKVEELSKEIIALKESLESAKLAHI 196 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544433211111112222222222 234555566666666666666666655433
Q ss_pred hhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001234 292 EEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL 332 (1118)
Q Consensus 292 ~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL 332 (1118)
+-+ ..++..+..++.....++..|...+++|..|...+
T Consensus 197 eAe---ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 197 EAE---EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 34555556677777888888888888888887777
No 112
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=50.61 E-value=4.9e+02 Score=32.07 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhHHh
Q 001234 311 VIEREASLQKKEQK 324 (1118)
Q Consensus 311 ~~~~~~~Le~KEkE 324 (1118)
++.++.+.+.||.+
T Consensus 194 ~~~rk~m~D~KEre 207 (489)
T PF05262_consen 194 IDKRKDMVDIKERE 207 (489)
T ss_pred hhhhhhhHHHHHHH
Confidence 33334444444433
No 113
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.50 E-value=6e+02 Score=31.21 Aligned_cols=411 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhh
Q 001234 216 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS 295 (1118)
Q Consensus 216 f~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~ 295 (1118)
|.+|--+.-=.|.+-+..+.+-+..|...++.+.....-|++=-+.-..+...+..........++.+-.-+-.+=.
T Consensus 89 ~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~--- 165 (569)
T PRK04778 89 FEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGP--- 165 (569)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc---
Q ss_pred hhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHH
Q 001234 296 NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 375 (1118)
Q Consensus 296 dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~ 375 (1118)
+++.++..|..-|.+...|.+=-++=.=++-..++..
T Consensus 166 --------------a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~----------------------------- 202 (569)
T PRK04778 166 --------------ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQ----------------------------- 202 (569)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------------------------
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH---------HHHHHhHHHHHHHHHH
Q 001234 376 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI---------AFEKEADLKKSLLQKE 446 (1118)
Q Consensus 376 K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~---------aeEK~le~ek~~L~~e 446 (1118)
.+..+..-++.++.==.=+.+..+.|=+-+..|+.==+.|. ..+++|..=+.+|...
T Consensus 203 --------------l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 203 --------------LEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH-------
Q 001234 447 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE------- 519 (1118)
Q Consensus 447 KEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~e------- 519 (1118)
...|..+ +|....+.+..=..+|+.--+.|+--..-+...-.....+..-|++++.+-..|..|.+.|++.
T Consensus 269 ~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 269 LALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Q ss_pred ---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhh
Q 001234 520 ---KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 596 (1118)
Q Consensus 520 ---KekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs 596 (1118)
...|+.+-+.|...-..+..........-..+..-+. .+...++.+.-++.+|...+.
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le---------------el~e~leeie~eq~ei~e~l~---- 407 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE---------------EILKQLEEIEKEQEKLSEMLQ---- 407 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001234 597 EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 676 (1118)
Q Consensus 597 ~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLek 676 (1118)
.=+.-|..+.++...+...|. +-++.-+..++..+=+-.-.-...+.-++.+|..
T Consensus 408 -------------------~Lrk~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 408 -------------------GLRKDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhhh
Q 001234 677 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH---ADREEIQAESERLKK 732 (1118)
Q Consensus 677 ER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~---~ERe~fl~~vEklK~ 732 (1118)
+......|-...+.+..+...+++.|..+..-|-+...++- ..+++|..+......
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~ 521 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAE 521 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
No 114
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=7.9e+02 Score=32.46 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred hHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001234 265 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 344 (1118)
Q Consensus 265 ~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 344 (1118)
-...++..-++|++.=+..-++++.|++.-++|+.++-..+..-.+...-.........+|..+ +.++++|.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~--------~~e~k~l~ 750 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAA--------LSENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHH--------HHHHHHHH
Confidence 3344555556666666666677888888888888888877766665555555555555555444 34555555
Q ss_pred HHh
Q 001234 345 ANH 347 (1118)
Q Consensus 345 deh 347 (1118)
.+|
T Consensus 751 ~~q 753 (970)
T KOG0946|consen 751 NDQ 753 (970)
T ss_pred HHH
Confidence 443
No 115
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=47.91 E-value=4.6e+02 Score=29.64 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001234 497 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 575 (1118)
Q Consensus 497 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~e-Ere~lek~~~~E~erLK~EK~~~r~~~kr 575 (1118)
+||+++-.|-.++.+....+......||++=+.|--+-++-++.-.+.+. .+-.|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888888887777776654 3556777777777777555 55666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001234 576 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 613 (1118)
Q Consensus 576 elEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 613 (1118)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 5556666666555666666655555554
No 116
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=47.82 E-value=4.5e+02 Score=29.59 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=20.4
Q ss_pred hhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001234 206 EDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 252 (1118)
Q Consensus 206 E~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q 252 (1118)
...+..+...+.++...++..+..-+..+..++..+...+..+...+
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444443333
No 117
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.01 E-value=4.4e+02 Score=33.91 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=55.0
Q ss_pred hhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 001234 261 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 340 (1118)
Q Consensus 261 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~EI 340 (1118)
++++..+.+-.=..-++.|+..+......+..--.+|...-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555544444333333333333333333344445555555555666666666666666666666
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHH
Q 001234 341 QKIIANHESALRVKQSEFEAELAIK 365 (1118)
Q Consensus 341 QKLldeh~a~L~~Kk~EFElElE~k 365 (1118)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666655544433333
No 118
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=46.99 E-value=4.3e+02 Score=29.11 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=102.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Q 001234 433 EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVE 512 (1118)
Q Consensus 433 EK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkE 512 (1118)
-++|..+-..|...-+-+....+-|---...+..+.+-+.++-+.-++.++|=.+ ||...-.+=.+..-|++.
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443444444444444555555555554433 344444455567788888
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001234 513 TDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 592 (1118)
Q Consensus 513 ae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe 592 (1118)
+-.|..+...+.++|+.|-+....|.-+...+... ...|-.++.+++.++- ..++|-+.|++|.+.--
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-----------~~eL~~~~~~Lq~Ql~-~~e~l~~~~da~l~e~t 157 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-----------SKELATEKATLQRQLC-EFESLICQRDAILSERT 157 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-----------HHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999998888777777666655532 2334446666666552 57899999999988766
Q ss_pred hhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHH
Q 001234 593 HEHSEWFTKIQQERADFLLGIEMQKRDLENCI 624 (1118)
Q Consensus 593 hErs~~~eKiq~Erad~l~d~EmqkreLE~~i 624 (1118)
+--..+..-|. |-.....++-+-+..||.-|
T Consensus 158 ~~i~eL~~~ie-Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 158 QQIEELKKTIE-EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55444443333 33445556666666666554
No 119
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=46.51 E-value=8.4e+02 Score=32.32 Aligned_cols=148 Identities=13% Similarity=0.174 Sum_probs=66.8
Q ss_pred HHHHHhhHhhhhhhhhHHHHHH---------hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh
Q 001234 112 AEARKREESLKKTLGVEKECIA---------SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE 182 (1118)
Q Consensus 112 sEaeKREEnLkKALgvEKqCVa---------dLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe 182 (1118)
+....|.+-|.+.+|++.---. .....+..++.....+-..++..++....-+..+......+...+-.+.
T Consensus 164 a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~ 243 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQQQ 243 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999985421 1233444555555554444444444444333333333333322222222
Q ss_pred HHHH------HHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-----hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 001234 183 SLQA------EANRYHRSAERKLQEVVAREDDLSRRIASFK-----ADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 251 (1118)
Q Consensus 183 a~~A------Ea~Rk~s~aerKL~eVEaRE~~LrRerlSf~-----~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~ 251 (1118)
..+. +.......+...+..+..........+..+. ......-..+...+..+...+..+...+..+...
T Consensus 244 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (1047)
T PRK10246 244 QSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQST 323 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0001111222222222222222222222221 1222344445555666666666666666666666
Q ss_pred hhhhhhhh
Q 001234 252 QTLLNERE 259 (1118)
Q Consensus 252 q~~LNqRE 259 (1118)
+..+....
T Consensus 324 ~~~~~~~~ 331 (1047)
T PRK10246 324 MALRARIR 331 (1047)
T ss_pred HHHHHHHH
Confidence 55555444
No 120
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=44.88 E-value=7.3e+02 Score=31.14 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhh----hhhhhhHHHHHHHHHhhhhHHHHHhhhhhhH
Q 001234 114 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVA----ADSKFAEARCMVENAQKKFAEAEAKLHAAES 183 (1118)
Q Consensus 114 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~t----sesKLaEA~aLv~~~eeKslEvE~KL~aAea 183 (1118)
...|-..|++.| ...|.+|...+.++.-+-.. ++.+|++.+.-...++-....+++.+.....
T Consensus 199 L~~ql~~l~~~l-------~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 199 LAPEIADLSKQS-------RDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554443 34577777777766654321 1234444444444444444444444443333
No 121
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=44.62 E-value=5.8e+02 Score=29.93 Aligned_cols=206 Identities=26% Similarity=0.325 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 001234 441 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 506 (1118)
Q Consensus 441 ~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~l--------------rLQseLKeEId~~R~Qk 506 (1118)
..|++-.+-|..|-.+|++.+.+-..=+..+.+=+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 4566667777777777777776666666666665544444443333332 12234444555555566
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHHHhhhhhhhhh
Q 001234 507 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMR---DQHKRDVDSLNRE 583 (1118)
Q Consensus 507 e~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r---~~~krelEsL~~e 583 (1118)
.-|..|.+.|++...--..+--+|-++-+..+-....+. ..-+. .|++.|=..-..++ .++++++-++--+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-----~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-----ARHFP-HEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-----ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655555555555555554444332222221 00000 22222222222222 2344555555555
Q ss_pred HHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001234 584 REEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLKEK 659 (1118)
Q Consensus 584 kEsF~~kMehErs~~~eKi---q~Erad~l~d~EmqkreLE~~-iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~ 659 (1118)
+++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+||--|.+
T Consensus 156 keEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 156 KEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 3455544443 445566665544433333332 233 599999999999999999999988877
Q ss_pred HHH
Q 001234 660 AEK 662 (1118)
Q Consensus 660 a~k 662 (1118)
+.+
T Consensus 226 le~ 228 (319)
T PF09789_consen 226 LER 228 (319)
T ss_pred HHh
Confidence 653
No 122
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.54 E-value=70 Score=34.99 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=30.4
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001234 681 INMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 730 (1118)
Q Consensus 681 i~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl 730 (1118)
+..+.+.|..+|.++++....|..-.++|.+-|.+|-+||+.|...+.+.
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666555443
No 123
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=44.45 E-value=5.6e+02 Score=29.68 Aligned_cols=125 Identities=12% Similarity=0.091 Sum_probs=65.1
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH---------hhhhHHHhhhhhHHHHHHhHhhhhhh
Q 001234 151 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA---------ERKLQEVVAREDDLSRRIASFKADCE 221 (1118)
Q Consensus 151 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~a---------erKL~eVEaRE~~LrRerlSf~~E~e 221 (1118)
...+.+...+.....-+++..-++..+|.+|+..+..--+++.-. ..+|.++..+-...+.++....+-..
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777888888888888888888888887766665433 12344444333333333322211110
Q ss_pred hHHH-----HHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHH
Q 001234 222 EKER-----EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKEL 276 (1118)
Q Consensus 222 a~E~-----~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeL 276 (1118)
.... .+ -.=..+......|.+.+..|.+....+...-..+......+...+..|
T Consensus 240 ~~~~~~~~~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 240 GSSGKDALPEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred ccCCcccchhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 0000 00 000123344455555556666555555555555555555444444444
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=44.32 E-value=3.9e+02 Score=27.87 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHH
Q 001234 237 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 316 (1118)
Q Consensus 237 weKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~ 316 (1118)
|+++-....+-|-..++--.-=+.||..-.+.|...+..++.+..-.+.+...+..-+..|......+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888877666667788888888888888888888877777777777777777777777777888888888
Q ss_pred HHHHhHHhHHHHHHHHhhhh
Q 001234 317 SLQKKEQKLLVSQETLASKE 336 (1118)
Q Consensus 317 ~Le~KEkELl~leEKL~aRE 336 (1118)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776544
No 125
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=43.67 E-value=2.5e+02 Score=29.71 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhh
Q 001234 221 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 297 (1118)
Q Consensus 221 ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl 297 (1118)
.+.+..+...|++|.+-.|.--+...+|.....-|...+..+.+....+..++.++..++.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888888888888888888888888888888888887777776665555555554443
No 126
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.59 E-value=2.2e+02 Score=26.46 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=49.8
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001234 457 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 533 (1118)
Q Consensus 457 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 533 (1118)
+++..++=.++..++-++=++|-.++ .++-.-|.++|.+-..+.+.+..|+...+..+.+-+.|-.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666665554 88888999999999999999999998888888877766543
No 127
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=43.21 E-value=3.6e+02 Score=27.04 Aligned_cols=96 Identities=27% Similarity=0.301 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001234 448 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 527 (1118)
Q Consensus 448 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 527 (1118)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555566666666666666666666644211111111222256777777788888888888888877777777777
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 001234 528 EMIDEKREELRKEAERVAV 546 (1118)
Q Consensus 528 E~LDEKRael~KEa~~I~e 546 (1118)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 5 345555555554443
No 128
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.09 E-value=3.8e+02 Score=28.75 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 001234 454 KSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGE 487 (1118)
Q Consensus 454 K~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E 487 (1118)
+..++++...++.-...|...+..+..++..|.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3333344444444444444444444444444443
No 129
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=42.71 E-value=2.6e+02 Score=37.15 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=19.2
Q ss_pred HHHhhhhhcchhhhhhccccc----hhheehhhhhhhHHHHH
Q 001234 53 IAKLETECYILKIFEHQHHMG----LLILEKKELASKYEQIK 90 (1118)
Q Consensus 53 IskLE~E~~~~~lydYQynMG----LLLiEkKEwtSK~EeLk 90 (1118)
+..|-. .++|.+|+|-++-+ .+++|-=...+=++-|.
T Consensus 66 L~~L~H-PNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~ 106 (1021)
T PTZ00266 66 MRELKH-KNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQ 106 (1021)
T ss_pred HHHcCC-CCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHH
Confidence 344433 36788888654321 36676544444444443
No 130
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.65 E-value=4.9e+02 Score=28.47 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001234 507 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 562 (1118)
Q Consensus 507 e~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erL 562 (1118)
..|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444555555555555555555555555544444433
No 131
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.24 E-value=3.8e+02 Score=28.70 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001234 493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 572 (1118)
Q Consensus 493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 572 (1118)
.+|+.+|+.++.....|....+.++..|.-. .|-..+-++..+|+++...+..+=.++..+=..--+.++.+.....+.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777766655 233333334444444444444333333333333344444444444444
Q ss_pred HHhhhhhhhhhHHHH
Q 001234 573 HKRDVDSLNREREEF 587 (1118)
Q Consensus 573 ~krelEsL~~ekEsF 587 (1118)
..+=-+.+-.-+.-+
T Consensus 151 anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 151 ANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHhhHHHHHHHH
Confidence 444444443333333
No 132
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=42.24 E-value=4.7e+02 Score=28.21 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=65.7
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHh
Q 001234 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQK 101 (1118)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lK 101 (1118)
.+|+||..+. ++..--+--|+. .|--+|-.++.. |. +++++++.+.-..+
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~-----l~---------------------~ar~~lA~~~a~~k 55 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDT-----LV---------------------EVRTTSARTIADKK 55 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-----HH---------------------HHHHHHHHHHHHHH
Confidence 4899988765 566666777898 666777777776 44 55555555544444
Q ss_pred hhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001234 102 HDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181 (1118)
Q Consensus 102 REqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 181 (1118)
+-.--+--+-..+.+++...+.||.--.+=.|- .||-+ +..+.+.-.....-+......|+.+..+....+.|+..+
T Consensus 56 ~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr--~Al~~-k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 56 ELERRVSRLEAQVADWQEKAELALSKGREDLAR--AALIE-KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555432222111 12211 111222222333334444455555555555554444444
Q ss_pred hHH
Q 001234 182 ESL 184 (1118)
Q Consensus 182 ea~ 184 (1118)
.++
T Consensus 133 k~k 135 (219)
T TIGR02977 133 RAR 135 (219)
T ss_pred HHH
Confidence 443
No 133
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=41.45 E-value=7.9e+02 Score=30.54 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=65.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001234 481 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 560 (1118)
Q Consensus 481 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 560 (1118)
+.+-|.|--.||++||.=--.|++=.+.-+.|. ++|-+|=-.|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777889999988888888777888876 5788888888877765555556777888888888888888888
Q ss_pred hhHHHHHHH
Q 001234 561 SLRQERDAM 569 (1118)
Q Consensus 561 rLK~EK~~~ 569 (1118)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888754
No 134
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.77 E-value=2.8e+02 Score=28.48 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001234 448 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 479 (1118)
Q Consensus 448 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 479 (1118)
+++..|..+|..++..+..-...+......|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333333333
No 135
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.75 E-value=5.2e+02 Score=28.23 Aligned_cols=111 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHH
Q 001234 586 EFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE--EEKMREFQQISSLKEKAEKE 663 (1118)
Q Consensus 586 sF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE--eek~~EL~~IN~lkE~a~kE 663 (1118)
+|+.+=.+++..-..++...-.+-...++-.+.+|......+..+++..|-++++.+- ...-..|..|..+|+...+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH--------hhhhhhhhhHHHHHHH
Q 001234 664 LEQVTLEIKRLDLERME--------INMDRQRRDREWAELN 696 (1118)
Q Consensus 664 ~Eev~lE~~rLekER~E--------i~~~ke~le~e~aEm~ 696 (1118)
|..+.-++.++..+-.+ .-..|.+|+.+..+++
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 136
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.73 E-value=4.2e+02 Score=27.17 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001234 477 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 513 (1118)
Q Consensus 477 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEa 513 (1118)
.++.++.|-.+|++|=..|-.-|.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4466788999999999999999999998877664444
No 137
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.12 E-value=1.2e+03 Score=32.12 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001234 618 RDLENCIEKRREELESSFREREKA-FEEEKMREF-QQISSLKEKAEKELEQVTLEIKRLDL 676 (1118)
Q Consensus 618 reLE~~iqkRqEEiE~~L~EREk~-FEeek~~EL-~~IN~lkE~a~kE~Eev~lE~~rLek 676 (1118)
-.|=..|....++.+..|.|||+. ||+=-..++ .+|...--.|+.=+..|.-.|.++..
T Consensus 1085 ~~l~~~l~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1085 AGLLARLEQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677888888888999999875 666555444 34555666666667777777776665
No 138
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=40.11 E-value=7.4e+02 Score=29.83 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=14.4
Q ss_pred ccCCCCcccccCC-CCCCCCCCCcccccc
Q 001234 823 KHSGENSVENDEE-KSPTSDHEDASLTIN 850 (1118)
Q Consensus 823 k~SP~Kk~~~~~e-~~~~s~~~~~~~~~~ 850 (1118)
.+||+-++..+.- .+++|.--..+++|.
T Consensus 420 slspS~~ASSSlt~~pcSSPV~~k~llGs 448 (561)
T KOG1103|consen 420 SLSPSLPASSSLTPRPCSSPVKKKPLLGS 448 (561)
T ss_pred ccCCCCcccccCCCCCCCCcccccccccc
Confidence 3566666555543 344444444555553
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.77 E-value=7.1e+02 Score=30.74 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=44.3
Q ss_pred HHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001234 394 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 471 (1118)
Q Consensus 394 l~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi 471 (1118)
+..+.+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|++.|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455677777777788888888888888887777776433 22244444444444444444444445555555443
No 140
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.65 E-value=1.1e+03 Score=31.87 Aligned_cols=221 Identities=22% Similarity=0.284 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----
Q 001234 497 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ---- 572 (1118)
Q Consensus 497 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~---- 572 (1118)
.++|.++.+++-|+.+..+|.. +.+ |-....-|..-|+..+.+..-+-+.+.+. .+.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~----l~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRS----LEQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555 333 44444445555555555544444444422 23344555555544
Q ss_pred ------HHhhhhhhhhhHHHHHHhhhhhhhhHHH----------------HHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 001234 573 ------HKRDVDSLNREREEFMNKMVHEHSEWFT----------------KIQQERADFLLGIEMQKRDLENCIEKRREE 630 (1118)
Q Consensus 573 ------~krelEsL~~ekEsF~~kMehErs~~~e----------------Kiq~Erad~l~d~EmqkreLE~~iqkRqEE 630 (1118)
++|.++.......+...+|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+.
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~- 802 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ- 802 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec-
Confidence 3455555555555555555421122211 12888888888999999999888864433
Q ss_pred HHhHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHH
Q 001234 631 LESSFR---EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ 707 (1118)
Q Consensus 631 iE~~L~---EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~ 707 (1118)
++.+ +|...+=+.-+.+++.+---.+.+.+++-.+ .+|.. ++ ..-=+..+.+|.+.++...-|+..-.
T Consensus 803 --~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~t 873 (1141)
T KOG0018|consen 803 --KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELT 873 (1141)
T ss_pred --ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3444455555666666666666666666666 44433 22 22234456677777777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001234 708 KLEEQRQLLHADREEIQAESERLKKLEDLK 737 (1118)
Q Consensus 708 KLk~QRE~~~~ERe~fl~~vEklK~ckncg 737 (1118)
||..++-.+-..++++.. |.+.-+..|+
T Consensus 874 kl~~~i~~~es~ie~~~~--er~~lL~~ck 901 (1141)
T KOG0018|consen 874 KLDKEITSIESKIERKES--ERHNLLSKCK 901 (1141)
T ss_pred HHhhhhhhhhhHHHHHHH--HHHHHHHHhh
Confidence 776666555555555543 2333344454
No 141
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=39.15 E-value=6e+02 Score=28.53 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.5
Q ss_pred HHHhHHHHH
Q 001234 131 CIASLEKAV 139 (1118)
Q Consensus 131 CVadLEKAL 139 (1118)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 142
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=38.10 E-value=8.2e+02 Score=29.78 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=10.8
Q ss_pred HhHHHHHHhhhhhhhhhH
Q 001234 673 RLDLERMEINMDRQRRDR 690 (1118)
Q Consensus 673 rLekER~Ei~~~ke~le~ 690 (1118)
.|-.||.-+...-+++..
T Consensus 410 ~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHhhhhhccccHHHHHH
Confidence 555666666666555554
No 143
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.01 E-value=5.4e+02 Score=27.69 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001234 495 LKEELDVVRAQKLE 508 (1118)
Q Consensus 495 LKeEId~~R~Qke~ 508 (1118)
|...+...|.+.-.
T Consensus 138 l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 138 LQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 144
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.00 E-value=6.1e+02 Score=32.66 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHh
Q 001234 145 ESAETKVAADSKFAEARCMVENAQKKFAEAEAK 177 (1118)
Q Consensus 145 E~AevK~tsesKLaEA~aLv~~~eeKslEvE~K 177 (1118)
+..+++-.|...|...+.-+..++.+..+.-.+
T Consensus 136 ~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 136 DDGKVKDGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred CCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666667777766666666655554444
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.67 E-value=2.3e+02 Score=27.33 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001234 470 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 524 (1118)
Q Consensus 470 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 524 (1118)
+|..+.+-+..++=|=.|+----..|.+|++..|+.+..|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555455555444566677777777777777777777777766553
No 146
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.59 E-value=8.1e+02 Score=31.58 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=54.4
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001234 260 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 339 (1118)
Q Consensus 260 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~E 339 (1118)
.++++..+.+-.-+.-++.|+..+......+.+--.+|......+-.+..++......++...++|....++|..+....
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555556666666665554444444444444444444444444555555555666666666666666666666
Q ss_pred HHHHHHHhHHHHhhhhhhHH
Q 001234 340 IQKIIANHESALRVKQSEFE 359 (1118)
Q Consensus 340 IQKLldeh~a~L~~Kk~EFE 359 (1118)
++++-.+.+.++..-+.+.+
T Consensus 563 ~~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 563 KLELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555554444333
No 147
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=35.51 E-value=1.3e+02 Score=30.18 Aligned_cols=43 Identities=33% Similarity=0.495 Sum_probs=26.5
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh--hhhhHHHHHHHHHhhhhHHH
Q 001234 132 IASLEKAVHEIRAESAETKVAAD--SKFAEARCMVENAQKKFAEA 174 (1118)
Q Consensus 132 VadLEKAL~emr~E~AevK~tse--sKLaEA~aLv~~~eeKslEv 174 (1118)
|+-|++||.++++.|......++ .|+.+.+.=|...+.-+.++
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA 89 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEA 89 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999987664443 34444444444444333333
No 148
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.49 E-value=1e+03 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001234 442 LLQKEKEEVNIIKSDLQKSLSSLDEKK 468 (1118)
Q Consensus 442 ~L~~eKEel~~lK~dlEK~~a~~e~q~ 468 (1118)
.+...++....|+.|+.|..+.+.+-+
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~ 286 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMK 286 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444445555566666655554433
No 149
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.26 E-value=5.4e+02 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=27.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh
Q 001234 146 SAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 180 (1118)
Q Consensus 146 ~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~a 180 (1118)
..+|+=.|+..|...+..+..++....+.-.++..
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~ 176 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIR 176 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999888877776655544
No 150
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.97 E-value=2.8e+02 Score=30.91 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=42.4
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001234 509 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 576 (1118)
Q Consensus 509 LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 576 (1118)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+|+++...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhcc
Confidence 3445555555556666667777778888888877777 89999999999999988643
No 151
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.96 E-value=4.9e+02 Score=32.95 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=11.0
Q ss_pred hhhhhhhhHHHHHHHHHHHh
Q 001234 590 KMVHEHSEWFTKIQQERADF 609 (1118)
Q Consensus 590 kMehErs~~~eKiq~Erad~ 609 (1118)
+++|||..-.++|-++|+++
T Consensus 681 ~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 681 KVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHhhcchhhhhhhhHHHH
Confidence 44455555555555555544
No 152
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=34.35 E-value=7.8e+02 Score=28.39 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=44.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--------------hhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001234 648 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMD--------------RQRRDREWAELNNSIEELMVQRQKLEEQ 712 (1118)
Q Consensus 648 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~--------------ke~le~e~aEm~kdIeeL~~ls~KLk~Q 712 (1118)
.-|++=|.+=.....||+.|.--+.+|++|....-.- +..++.+..-+.+-|+.|..|-+-|+.+
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4577788888999999999999999999998765444 3444444444444444444444444444
No 153
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=33.31 E-value=4.3e+02 Score=35.23 Aligned_cols=12 Identities=8% Similarity=-0.263 Sum_probs=5.0
Q ss_pred HHHHHHHHhhhh
Q 001234 722 EIQAESERLKKL 733 (1118)
Q Consensus 722 ~fl~~vEklK~c 733 (1118)
.++.-++.-..|
T Consensus 528 ~~~~~~~~~~~~ 539 (1021)
T PTZ00266 528 YFLKGMENGLSA 539 (1021)
T ss_pred hhhhhccccccc
Confidence 344444443333
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=32.73 E-value=8.8e+02 Score=28.54 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001234 698 SIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 737 (1118)
Q Consensus 698 dIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg 737 (1118)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+.=+|+
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999877664
No 155
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.17 E-value=1e+03 Score=29.13 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=24.2
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHH
Q 001234 291 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQET 331 (1118)
Q Consensus 291 k~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEK 331 (1118)
......|+.+--.++.|++.+-+++..|.--|..+.-||.-
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667777666666666666555555443
No 156
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.09 E-value=8.6e+02 Score=28.24 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=42.7
Q ss_pred HhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHH
Q 001234 195 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 274 (1118)
Q Consensus 195 aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEk 274 (1118)
++-.|.+++.|-.+|.-+---+.+|.++....+..||-..-- ..-+.+.-|.....+-.|=-+ .-+.|.|-.-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~---q~s~Leddlsqt~aikeql~k----yiReLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQ---QESQLEDDLSQTHAIKEQLRK----YIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 444566667776666666666667777776666666632221 122223333333333222223 3345556666
Q ss_pred HHHHHhhhH
Q 001234 275 ELEASRANV 283 (1118)
Q Consensus 275 eLEe~kkki 283 (1118)
+||-++...
T Consensus 123 dLErakRat 131 (333)
T KOG1853|consen 123 DLERAKRAT 131 (333)
T ss_pred HHHHhhhhh
Confidence 677666543
No 157
>PRK11519 tyrosine kinase; Provisional
Probab=32.05 E-value=1.1e+03 Score=29.98 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=29.3
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001234 151 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 194 (1118)
Q Consensus 151 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~ 194 (1118)
...+.|...|...++-+++...++..+|..|+..++.--+.+..
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44556666677777777777777777777777776665555443
No 158
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.59 E-value=7.9e+02 Score=27.63 Aligned_cols=8 Identities=50% Similarity=0.405 Sum_probs=2.5
Q ss_pred hHHHHHHh
Q 001234 429 LIAFEKEA 436 (1118)
Q Consensus 429 L~aeEK~l 436 (1118)
|...+|.+
T Consensus 199 L~~~ek~~ 206 (297)
T PF02841_consen 199 LTEKEKEI 206 (297)
T ss_dssp S-HHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 159
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=31.03 E-value=1.2e+02 Score=29.95 Aligned_cols=69 Identities=29% Similarity=0.257 Sum_probs=47.0
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH
Q 001234 124 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA 195 (1118)
Q Consensus 124 ALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~a 195 (1118)
.|.-|+.=...+|.....|-.|.-+. +.+=|.+||.||+.+......++.|...++..+.++......+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~l 70 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESL 70 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777888887777763 3455799999999888877777777766666666555443333
No 160
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.66 E-value=7.9e+02 Score=27.34 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001234 135 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 214 (1118)
Q Consensus 135 LEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerl 214 (1118)
|+-++++|+.++.+++-+...-++..+.+-..+..=...++.=-..|...+.-.+ +.=||+-.- ++.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al~--~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREALE--EKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH--HHH
Confidence 7888999999999888888777777777766666655555544444544444333 223333222 344
Q ss_pred HhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhh
Q 001234 215 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 253 (1118)
Q Consensus 215 Sf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~ 253 (1118)
++..-+.+++..+..+++.+-..++.+...+..+.+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777766553
No 161
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.00 E-value=8.1e+02 Score=27.26 Aligned_cols=77 Identities=26% Similarity=0.268 Sum_probs=55.2
Q ss_pred HHHHHHHHcc---CChHHHhhhcHHHHHHH-HHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHh
Q 001234 26 SIWKRLKEAG---LDEVSIKRRDKAALIAY-IAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQK 101 (1118)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~aLia~-IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lK 101 (1118)
.||+||..++ |+..--+.-|+.-++.+ |-..+++ +-++++.++.+-...|
T Consensus 2 ~i~~r~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~--------------------------l~~ar~~~A~~~a~~k 55 (225)
T COG1842 2 GIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESE--------------------------LAKARQALAQAIARQK 55 (225)
T ss_pred chHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHH
Confidence 4788888776 57777788888876653 4445555 5677888887777777
Q ss_pred hhhhhhhhHHHHHHHhhHhhhhhhhhH
Q 001234 102 HDRASHLSAIAEARKREESLKKTLGVE 128 (1118)
Q Consensus 102 REqaAhl~ALsEaeKREEnLkKALgvE 128 (1118)
+-.--.=-+...+++++.+-+.||---
T Consensus 56 ~~e~~~~~~~~~~~k~e~~A~~Al~~g 82 (225)
T COG1842 56 QLERKLEEAQARAEKLEEKAELALQAG 82 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 766666667778888888888887443
No 162
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=29.86 E-value=8.2e+02 Score=27.31 Aligned_cols=120 Identities=26% Similarity=0.373 Sum_probs=66.7
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001234 312 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 391 (1118)
Q Consensus 312 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 391 (1118)
+.+-..|-++|.+|-..+++..+-|+.- ..|..+ + +-+...+++ |...+
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~-~eLeEe---------------~----~~~~~nlk~-----------l~~~e 132 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQS-EELEED---------------L----RILDSNLKS-----------LSAKE 132 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH---------------H----HHhHhHHHH-----------HHHHH
Confidence 3455678888999988888888777532 112111 1 111222222 33345
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001234 392 ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 465 (1118)
Q Consensus 392 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e 465 (1118)
+++..++-..+.+++.+.+|=+.-+.+-... |++....+|.+..=-..|...++....++.+|..+..+++
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555556666666655555444444443 3555555555555455566666666666766666665554
No 163
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.80 E-value=7e+02 Score=26.46 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=38.4
Q ss_pred hhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhh-------hHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001234 387 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHL-------LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 459 (1118)
Q Consensus 387 l~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~-------LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK 459 (1118)
+...|+..-...++|..+...|.+-.+-|..+++. |.+.+-.|+...+.+ -..+++-+..++.-+++
T Consensus 80 l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 80 LLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555544444 444444444444444 34566777788888887
Q ss_pred hhhh
Q 001234 460 SLSS 463 (1118)
Q Consensus 460 ~~a~ 463 (1118)
.+..
T Consensus 154 ~k~~ 157 (158)
T PF09744_consen 154 QKDE 157 (158)
T ss_pred HHhc
Confidence 7654
No 164
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.71 E-value=5.3e+02 Score=25.04 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001234 488 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 549 (1118)
Q Consensus 488 ~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre 549 (1118)
|..|+++.++=||.+ ..|.-|+++||.+......|-..+-.-|.+|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456888888888876 5677788888876666555555555555555554444444433
No 165
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.53 E-value=5e+02 Score=30.66 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=33.5
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001234 401 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 455 (1118)
Q Consensus 401 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~ 455 (1118)
+..+-..|++.|++|-+|+..||.-- .-+.++|+..+.+|..|.-.+..-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788888888887776532 23345677777777777666655444
No 166
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=28.78 E-value=1.6e+03 Score=30.17 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001234 121 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 200 (1118)
Q Consensus 121 LkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~ 200 (1118)
|-.+.+--..-++-++-.|.+|..+.++.++.++.-+.+.. ++-.-.+-|.+...-.-.+.+...+++++-.
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e--------qLr~elaql~a~r~q~eka~~~~ee~e~~~l 420 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE--------QLRNELAQLLASRTQLEKAQVLVEEAENKAL 420 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhhhhHHHHHHhHhhhh-------hhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH
Q 001234 201 EVVAREDDLSRRIASFKAD-------CEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 273 (1118)
Q Consensus 201 eVEaRE~~LrRerlSf~~E-------~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kE 273 (1118)
-.+.|=..|..-.--|..+ ..-.-+.+.-++++.-+.++...+....|.+.++-...=+-+..+....+...+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~ 500 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR 500 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhH--HHHHHHHh----------hhhhHHHH
Q 001234 274 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL--LVSQETLA----------SKESNEIQ 341 (1118)
Q Consensus 274 keLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkEL--l~leEKL~----------aRE~~EIQ 341 (1118)
.+|..+...++.--.++..-...-+..++.|...++.-|..-..+-.+|.|+ +.++..-+ +-|-...|
T Consensus 501 ~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ 580 (980)
T KOG0980|consen 501 QELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQ 580 (980)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHH
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHH
Q 001234 342 KIIANHESALRVKQSEFEAELAI 364 (1118)
Q Consensus 342 KLldeh~a~L~~Kk~EFElElE~ 364 (1118)
-..+....+|+.-.-.-+-.|..
T Consensus 581 ~~~~~~~~il~~~~~~~~q~lq~ 603 (980)
T KOG0980|consen 581 LQDDLNDPILDGSLASGIQALQN 603 (980)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH
No 167
>PRK11281 hypothetical protein; Provisional
Probab=28.53 E-value=1.7e+03 Score=30.43 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=61.8
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHH-----------HhhhHHHHHHHHh
Q 001234 223 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA-----------SRANVEEKFKALN 291 (1118)
Q Consensus 223 ~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe-----------~kkkie~~~~~Lk 291 (1118)
.|..+..-...|.+|+..|.+....|...+...-..-..+.++.+.+.+....|.. .+..+..+...|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 55566666667777777777777666666655555555556666666655555532 2333344444443
Q ss_pred hhhhhhhHhHHHhhhh----HHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001234 292 EEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 344 (1118)
Q Consensus 292 ~ke~dl~~rl~~l~~r----Ee~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 344 (1118)
-+-+-...-+.+-+.+ -...+-....+..-|..+..||+.++.|=..+-++-+
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~ 262 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTV 262 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222221111 1122333344455556666666666665555544433
No 168
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=28.37 E-value=7.4e+02 Score=28.58 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHH------------HHHHHHHHhhhhhhhhhHHHHHH
Q 001234 48 ALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKAS------------AEAAELLQKHDRASHLSAIAEAR 115 (1118)
Q Consensus 48 aLia~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa------------~~eae~~lKREqaAhl~ALsEae 115 (1118)
-.-.+++-++.| .+-+-+-..+||++.=|-++..|++.... +.-..+-+.+-.+---..|+-+.
T Consensus 34 ~~q~kL~l~~~e----~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q 109 (268)
T PF11802_consen 34 ECQNKLSLIGTE----TLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQ 109 (268)
T ss_pred HHHHHHhhcCCC----CCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666 33355666778888888888888887642 33344444444444455677888
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhh
Q 001234 116 KREESLKKTLGVEKECIASLEKAVHEIRAESAET 149 (1118)
Q Consensus 116 KREEnLkKALgvEKqCVadLEKAL~emr~E~Aev 149 (1118)
-+-+.||..|+.|++|..+-.-.+.-|-.-+++.
T Consensus 110 ~KnekLke~LerEq~wL~Eqqql~~sL~~r~~el 143 (268)
T PF11802_consen 110 SKNEKLKEDLEREQQWLDEQQQLLESLNKRHEEL 143 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999998876554444444444433
No 169
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=28.27 E-value=6.3e+02 Score=26.09 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=46.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001234 646 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 725 (1118)
Q Consensus 646 k~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~ 725 (1118)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666777888889999999999999888554433 33444445555555555555566666
Q ss_pred HHHHhhhhh
Q 001234 726 ESERLKKLE 734 (1118)
Q Consensus 726 ~vEklK~ck 734 (1118)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666665554
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.17 E-value=6.1e+02 Score=27.81 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 001234 495 LKEELDVVRAQKLELMVETDKL 516 (1118)
Q Consensus 495 LKeEId~~R~Qke~LlkEae~L 516 (1118)
|++++...+.+-..|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 171
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.97 E-value=4.9e+02 Score=29.84 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=65.4
Q ss_pred hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q 001234 419 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEIK 494 (1118)
Q Consensus 419 sk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER----~E~lrLQse 494 (1118)
--.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+.++..+...+.+|..+++=| +||-.|+.+
T Consensus 157 ~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred CcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334555666666655555 4455555666777777777777778888888888888999988877 789999999
Q ss_pred HHHHHHHHHHHH---HHhHHhhHHH
Q 001234 495 LKEELDVVRAQK---LELMVETDKL 516 (1118)
Q Consensus 495 LKeEId~~R~Qk---e~LlkEae~L 516 (1118)
|++--+.|=..- ..|..+.|+.
T Consensus 234 L~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999877664432 3444444443
No 172
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=27.57 E-value=1.2e+03 Score=28.54 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=78.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh----HHHHHHhcchhHHhhhhHHHhhhhhHHH--
Q 001234 137 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----SLQAEANRYHRSAERKLQEVVAREDDLS-- 210 (1118)
Q Consensus 137 KAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe----a~~AEa~Rk~s~aerKL~eVEaRE~~Lr-- 210 (1118)
..|+.||.+.|-++.++.+-.++-...|.++-.|...+=. .++. |-.|=++.-+..+......+-++=|+|+
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888888777665432 1111 1122222222233232233333333322
Q ss_pred -----------------HHHhHhhhhhhhHHHHHHHHHhchH----HHHHHHHHHHHHHHHHhhhhhhhhHhhHh
Q 001234 211 -----------------RRIASFKADCEEKEREIIRERQSLS----DRKKILQQEHERLLDAQTLLNEREDHILS 264 (1118)
Q Consensus 211 -----------------RerlSf~~E~ea~E~~~~~qRe~L~----eweKkLqe~eerL~e~q~~LNqREe~~~e 264 (1118)
++.-+...|..+..+++.+..+.+. -|.|.-...=+.+|+.|..||--|+-+..
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D 307 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD 307 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555666777777776666665 48888777788999999999998887654
No 173
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.32 E-value=5.1e+02 Score=24.03 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHh
Q 001234 596 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 633 (1118)
Q Consensus 596 s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~ 633 (1118)
..+...+...+..|+..++-........|......++.
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 174
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.32 E-value=1.4e+03 Score=29.07 Aligned_cols=34 Identities=9% Similarity=0.236 Sum_probs=17.0
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHh
Q 001234 291 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQK 324 (1118)
Q Consensus 291 k~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkE 324 (1118)
..+...+..++..+...|.++..++...+..+.-
T Consensus 352 ~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 352 EQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555544444433
No 175
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.19 E-value=7.8e+02 Score=26.16 Aligned_cols=74 Identities=23% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHcc---CChHHHhhhcHHHHHH-HHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHhh
Q 001234 27 IWKRLKEAG---LDEVSIKRRDKAALIA-YIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKH 102 (1118)
Q Consensus 27 iWkr~~eaG---~De~S~~rrD~~aLia-~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKR 102 (1118)
+|+||..+. ++..--+-.|+..++. +|-.++.. +.+++++++.+.-..++
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~--------------------------l~~a~~~~a~~~a~~~~ 55 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQ--------------------------LRKARQALARVMANQKR 55 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHH
Confidence 688887764 4666666667776554 34445544 44555555555444444
Q ss_pred hhhhhhhHHHHHHHhhHhhhhhhh
Q 001234 103 DRASHLSAIAEARKREESLKKTLG 126 (1118)
Q Consensus 103 EqaAhl~ALsEaeKREEnLkKALg 126 (1118)
=..-.--+-..+.+++.....||.
T Consensus 56 le~~~~~~~~~~~~~~~~A~~Al~ 79 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEKQAELALA 79 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555555543
No 176
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.11 E-value=8.4e+02 Score=26.55 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001234 565 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 613 (1118)
Q Consensus 565 EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 613 (1118)
.-...++.|+.-++.|..-+..|+..|.. =-..|-.+..+|-+|+.++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999999999999985 3344455666777777654
No 177
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.91 E-value=1.1e+03 Score=27.75 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=53.6
Q ss_pred hhhHhhHhhHHHHhHhHHHHHHHhhhHHH--HHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001234 257 EREDHILSKLQELSRKEKELEASRANVEE--KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 334 (1118)
Q Consensus 257 qREe~~~e~~~~l~~kEkeLEe~kkkie~--~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~a 334 (1118)
.|++.+.++.+.-...++++|+....--- -...|+-.-..+..|-.--..+| +..|..-++.+-.||+++-.
T Consensus 345 kr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqke------eeklk~e~qkikeleek~~e 418 (445)
T KOG2891|consen 345 KREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKE------EEKLKAEEQKIKELEEKIKE 418 (445)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666654432211 11333333334443332222222 23455556778889999999
Q ss_pred hhhHHHHHHHHHhHHHHhhh
Q 001234 335 KESNEIQKIIANHESALRVK 354 (1118)
Q Consensus 335 RE~~EIQKLldeh~a~L~~K 354 (1118)
-|..-.+-|+.-|.+-|...
T Consensus 419 eedal~~all~~qeirl~~~ 438 (445)
T KOG2891|consen 419 EEDALLLALLNLQEIRLIAE 438 (445)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 99988888888888776543
No 178
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.75 E-value=7.7e+02 Score=28.09 Aligned_cols=55 Identities=11% Similarity=0.227 Sum_probs=28.0
Q ss_pred hchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhh
Q 001234 232 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 292 (1118)
Q Consensus 232 e~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 292 (1118)
..+...+..+++...++..+.. ...+.....+..++++++-++...+.....+++
T Consensus 249 ~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 249 ARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443221 123444556666777777666666665555543
No 179
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.20 E-value=7.4e+02 Score=25.59 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001234 483 SEAGELSVLEIKLKEELDVVRAQKLEL 509 (1118)
Q Consensus 483 eER~E~lrLQseLKeEId~~R~Qke~L 509 (1118)
.+..++......+..++...+.....+
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333334444333333333
No 180
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.15 E-value=2e+03 Score=30.31 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhH
Q 001234 243 QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 322 (1118)
Q Consensus 243 e~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KE 322 (1118)
..++.|.++|...--=|..++...+.+..+++-+++++.++-.--.. -..-|+.+.+.+.....-|
T Consensus 1595 ~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~--------------A~~a~~~a~sa~~~A~~a~ 1660 (1758)
T KOG0994|consen 1595 LAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE--------------AKQAEKTAGSAKEQALSAE 1660 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555666666666666666665543221111 1112334444444455555
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHH
Q 001234 323 QKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 402 (1118)
Q Consensus 323 kELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe 402 (1118)
+.|..|+..+..-.+-.-.+....+.|.-++++.- +.-+|++ .+-.-+=.+|+.+|-.....+++|+
T Consensus 1661 q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~-----~eA~~Ll--------~~a~~kl~~l~dLe~~y~~~~~~L~ 1727 (1758)
T KOG0994|consen 1661 QGLEILQKYYELVDRLLEKRMEGSQAARERAEQLR-----TEAEKLL--------GQANEKLDRLKDLELEYLRNEQALE 1727 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-----HHHHHHH--------HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55556665554443322222222222211111100 0011111 1112222356677777778888888
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHH
Q 001234 403 VQSRALVDKEKDLVERSHLLEEK 425 (1118)
Q Consensus 403 ~k~~~lkEKEkdl~~Ksk~LKEk 425 (1118)
.+...|...|+.+..-+..++++
T Consensus 1728 ~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1728 DKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhh
Confidence 88888888888888888777765
No 181
>PF14992 TMCO5: TMCO5 family
Probab=24.96 E-value=1.1e+03 Score=27.31 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001234 358 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 422 (1118)
Q Consensus 358 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 422 (1118)
++-|+....-.+++. +..-.-.+.+|.++...|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 37 Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 37 LEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 334444444444433 2222223666777766665544444333333344466666666555553
No 182
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.60 E-value=90 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=2.1
Q ss_pred HHHHHHHHhHHhhHHHH
Q 001234 501 VVRAQKLELMVETDKLQ 517 (1118)
Q Consensus 501 ~~R~Qke~LlkEae~Lk 517 (1118)
.+|..-+-|..|+-|||
T Consensus 28 ~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 183
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=24.57 E-value=1.4e+03 Score=30.10 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001234 519 EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 598 (1118)
Q Consensus 519 eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~ 598 (1118)
|..--.+.-|+|--|.++|-|..+...+|-.+|.+.++.=...|+. .+.+|.-+...++++=++-+.+|++=+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q--- 514 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQ--- 514 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3333444556677777777777777777777777776654444443 345566666778888888888887544
Q ss_pred HHHHHHHHHHhhhhhHhhhhhhH
Q 001234 599 FTKIQQERADFLLGIEMQKRDLE 621 (1118)
Q Consensus 599 ~eKiq~Erad~l~d~EmqkreLE 621 (1118)
|.-...|...++++|.++-|+-|
T Consensus 515 ~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 515 FKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred hhHHHHHhhhhHhhhHHHHHHHH
Confidence 33445677777777777766654
No 184
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=24.20 E-value=2.1e+03 Score=30.14 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=88.0
Q ss_pred HhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q 001234 608 DFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 687 (1118)
Q Consensus 608 d~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~ 687 (1118)
|-+++--.++++|+..++.+ +|..+.+..+.+.......|+... ...++-++..|..++.-++..+..
T Consensus 992 ~~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~ 1059 (1294)
T KOG0962|consen 992 QKIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNL 1059 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhH
Confidence 33556666777777777654 344445555566666666666554 556788999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHhHHhhhhHhhhh--hcccchh
Q 001234 688 RDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHS 756 (1118)
Q Consensus 688 le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg~~~~~~vLSdlq--~sd~~~~ 756 (1118)
+-++..++...|.-+...=.+ .+-+......|..|+..---=.+|+++|...--.-.++|| ...|+.-
T Consensus 1060 ~lg~~ke~e~~i~~~k~eL~~-~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeei 1129 (1294)
T KOG0962|consen 1060 LLGEMKQYESQIKKLKQELRE-KDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEI 1129 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876543221 1222333344555554444445677777777655445565 5666644
No 185
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=23.65 E-value=1e+03 Score=26.38 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 001234 495 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 574 (1118)
Q Consensus 495 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~k 574 (1118)
+...++++..++.-..+.++ .=|.+|+..+-..+.=+..++. +....-.+ .++++. .=-++.+..-...++.|+
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~---ksKk~Ye~~Cke~~~a~~~~~~-~~~~~~~k-e~~K~~-~Kl~K~~~~~~k~~~~Y~ 178 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTM---ESKKNYEQKCRDKDEAEQAVNR-NANLVNVK-QQEKLF-AKLAQSKQNAEDADRLYM 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh-ccCCCCHH-HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45566776666666666554 4566788777654433322221 11110000 111111 124456667778899999
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001234 575 RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 613 (1118)
Q Consensus 575 relEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 613 (1118)
.-++.|..-+..|+..|. .--..|..+.-||-+|+++.
T Consensus 179 ~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~ 216 (240)
T cd07672 179 QNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 55556667788888888764
No 186
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.98 E-value=1.8e+03 Score=29.05 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHH--hHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001234 369 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV--QSRALVDKEKDLVERSHLLEEKENKLI 430 (1118)
Q Consensus 369 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~--k~~~lkEKEkdl~~Ksk~LKEkEksL~ 430 (1118)
++++|.+|..++-+-|--+...-+.+.--|..|-. +++++-+-|-.|..+.+++---+..+-
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~ 159 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSG 159 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 45555666555555444444333333333333322 266777778888887777654444433
No 187
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.88 E-value=5.9e+02 Score=27.88 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhh
Q 001234 246 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 298 (1118)
Q Consensus 246 erL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~ 298 (1118)
++..+.+..+++++..+++-.....++..+|+.++.+++.....+...++++.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666777777777777777777777777766555555555443
No 188
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=1.2e+03 Score=26.71 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=33.1
Q ss_pred HhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001234 263 LSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 333 (1118)
Q Consensus 263 ~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~ 333 (1118)
++..+.|.+...+++.+...+..+...+.+--.=+..+-+....-|.++-..++.|+.-+..+..+.+++.
T Consensus 47 ~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 47 VEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555554444433332222222222223333344555555566666666555555544
No 189
>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]
Probab=22.62 E-value=1.1e+02 Score=33.83 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=36.0
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCCcccccCCCCCCCCCCCccc-cc-----cccCCccccc
Q 001234 803 ASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASL-TI-----NSRKRQPVRY 859 (1118)
Q Consensus 803 ~SP~s~g~~SWlrKCTskIFk~SP~Kk~~~~~e~~~~s~~~~~~~-~~-----~~~k~q~iry 859 (1118)
.+|++.+|+-=+-+||.++|.-+-.-++++ |+++...+ +. -.+-+||.++
T Consensus 55 ~~~~~~~p~t~i~~~~p~~~att~k~~aer-------sd~~v~~l~lhkRqffHS~t~qPl~l 110 (221)
T KOG2350|consen 55 NGPVKRTPITHILVCRPKRTATTMKEFAER-------SDGEVEQLRLHKRQFFHSDTCQPLRL 110 (221)
T ss_pred CCCCCCCcchhhhccchHhhhhcccccccc-------cccceeeeccccceeeeccccCCCCH
Confidence 567777888889999999999887655555 45555555 22 4567788876
No 190
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.68 E-value=1.2e+03 Score=27.52 Aligned_cols=135 Identities=15% Similarity=0.240 Sum_probs=78.1
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHH---HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhh
Q 001234 338 NEIQKIIANHESALRVKQSEFEAEL---AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD 414 (1118)
Q Consensus 338 ~EIQKLldeh~a~L~~Kk~EFElEl---E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd 414 (1118)
.|+.+++-.-++...+.-.+-=.=+ .+-++++..-+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=..
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444444444333 3345667777777777788888888888899999999999998888776555
Q ss_pred HHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 001234 415 LVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK--KKQVNCAK 475 (1118)
Q Consensus 415 l~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q--~~qi~ee~ 475 (1118)
...+++.++++=+. .-..+......|-.=-++|...|.+++.=-+++.+. +-+|.++.
T Consensus 278 ~~~~ls~~~~~y~~---~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 278 AQDELSEVQEKYKQ---ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 55555555544433 333333334444444445555555555444444332 23444443
No 191
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.64 E-value=5.2e+02 Score=27.11 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001234 493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 527 (1118)
Q Consensus 493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 527 (1118)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777778888899999988888875
No 192
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.45 E-value=5.9e+02 Score=31.74 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHH--HHhhhhHHHHhhhhHHHHh------hhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001234 386 DLGQREESLLEREHDLEVQSRAL--VDKEKDLVERSHLLEEKEN------KLIAFEKEADLKKSLLQKEKEEVNIIKSDL 457 (1118)
Q Consensus 386 el~h~Eekl~kREqaLe~k~~~l--kEKEkdl~~Ksk~LKEkEk------sL~aeEK~le~ek~~L~~eKEel~~lK~dl 457 (1118)
...+.+..+.++++..+.....| ++.=+.+..+++.|+. + .+....+++..=+..+.++++.+..++.++
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~--~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK--KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHHHHHhh
Q 001234 458 QKSLSSLDEKKKQVNCAKDK 477 (1118)
Q Consensus 458 EK~~a~~e~q~~qi~ee~E~ 477 (1118)
+..+..+..+...+..+-++
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred HHhHHHHHHHHHHHHhccHh
No 193
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.11 E-value=1.9e+03 Score=28.56 Aligned_cols=61 Identities=28% Similarity=0.495 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001234 511 VETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 579 (1118)
Q Consensus 511 kEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEs 579 (1118)
.|-|-||-+..+++.|-+.|--.-++ +..-|+--++.+-.=-+.|+.|.+. +..++++|..
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee-------~~rLk~iae~qleEALesl~~EReq-k~~LrkEL~~ 181 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEE-------AARLKEIAEKQLEEALESLKSEREQ-KNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45555555555555555555443333 3333333344444444556665543 4556676666
No 194
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.07 E-value=7.5e+02 Score=23.81 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001234 489 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 568 (1118)
Q Consensus 489 lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~ 568 (1118)
-.|+.+.++-||.+- .|.-|+++|| ||...|+.|.-.....|++|++ |-+.||+|-.+
T Consensus 7 ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~~----eneqlk~e~~~ 64 (79)
T COG3074 7 EKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALER----ENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 467888999999874 4555565554 6777788888888888888763 67778888777
Q ss_pred HHHHHH
Q 001234 569 MRDQHK 574 (1118)
Q Consensus 569 ~r~~~k 574 (1118)
-++.+.
T Consensus 65 WQerlr 70 (79)
T COG3074 65 WQERLR 70 (79)
T ss_pred HHHHHH
Confidence 666554
No 195
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.90 E-value=1.2e+03 Score=26.02 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001234 494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 526 (1118)
Q Consensus 494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 526 (1118)
.|..+++.+|+ +|..|......+...|+.|
T Consensus 135 ~l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 135 SLRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred hHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 35555666554 3455555555666677765
No 196
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.77 E-value=1.8e+03 Score=28.14 Aligned_cols=37 Identities=35% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhh
Q 001234 493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEM 529 (1118)
Q Consensus 493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~ 529 (1118)
-+|+++++++-.+.+.|++++=+++-+-+.|=++-+.
T Consensus 342 ~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 342 NKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4678899999999999999999998888887665443
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=20.45 E-value=1.5e+03 Score=26.92 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=31.4
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHH
Q 001234 121 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAE 187 (1118)
Q Consensus 121 LkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AE 187 (1118)
|..-+..-++=+...|.+|.+.|.++.-+ ..+. ......=+.++..+...++..+.++++.+.-
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~~~-~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~ 229 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGI--LPDQ-EGDYYSEISEAQEELEAARLELNEAIAQRDA 229 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccc--Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555667788888888777543 2211 1122223344444444444444444444433
No 198
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.43 E-value=9.8e+02 Score=28.34 Aligned_cols=99 Identities=14% Similarity=0.334 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHH
Q 001234 157 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 236 (1118)
Q Consensus 157 LaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~e 236 (1118)
|..++.+..+|..-+.++-..|- |-+.++.+-|..+.+||.-|-.+.-....
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~----------kl~~~i~~~lekI~sREk~iN~qle~l~~------------------ 273 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLD----------KLQQDISKTLEKIESREKYINNQLEPLIQ------------------ 273 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------------
Confidence 66777777888777776665543 35667777777888887766543332222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHH
Q 001234 237 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 286 (1118)
Q Consensus 237 weKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~ 286 (1118)
.+...+.+|.+.+.-.++....+.++.+.|...-.+||..+..++.-
T Consensus 274 ---eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 274 ---EYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24455666667777777777777888888888888888777766544
No 199
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.39 E-value=3.4e+02 Score=25.20 Aligned_cols=53 Identities=9% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001234 129 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181 (1118)
Q Consensus 129 KqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 181 (1118)
+.++..+.+.+..|+.+...+.--...-+..++.+.++++.|...+..=..++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67889999999999999999998888899999999999888887776655444
No 200
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=20.20 E-value=1.2e+03 Score=26.00 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=92.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhh-hhhhhhHH
Q 001234 82 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVA-ADSKFAEA 160 (1118)
Q Consensus 82 wtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~t-sesKLaEA 160 (1118)
|.-|.++|++||..-+.+. +|||. .|+.--+.||+-|..||.--.+...+ +.+.--.|
T Consensus 1 Yvekv~~LQ~AL~~LQaa~--------------ekRE~-------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~ 59 (205)
T PF12240_consen 1 YVEKVERLQQALAQLQAAC--------------EKREQ-------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNA 59 (205)
T ss_pred ChhHHHHHHHHHHHHHHHH--------------HHHHH-------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcH
Confidence 3567899999998876543 55654 46666788999999999876664421 12211335
Q ss_pred HHHHHHHhhhhHHHHHhhhhhhHHHHHHhcch-hHHhhhhHHHhhhh-hHHHHHH-hHhhhhhhhHHHHHHHHHhchHHH
Q 001234 161 RCMVENAQKKFAEAEAKLHAAESLQAEANRYH-RSAERKLQEVVARE-DDLSRRI-ASFKADCEEKEREIIRERQSLSDR 237 (1118)
Q Consensus 161 ~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~-s~aerKL~eVEaRE-~~LrRer-lSf~~E~ea~E~~~~~qRe~L~ew 237 (1118)
..|.. .+-|-|.++.+.++-.+.-..++ -+.-+.==-++|=. ..-.|.. +.-.+.++.+...| +.-+++---
T Consensus 60 ~~L~~----~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~-r~~eel~~a 134 (205)
T PF12240_consen 60 SNLKE----LLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL-REEEELHMA 134 (205)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc-cchHHHHHh
Confidence 55544 45556788888877766655543 11111111121111 1122333 33345666664444 444666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHH
Q 001234 238 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKE 275 (1118)
Q Consensus 238 eKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEke 275 (1118)
.++.++++.||-..- -.|.|.|..++.++..
T Consensus 135 ~~K~qemE~RIK~Lh-------aqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 135 NRKCQEMENRIKALH-------AQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 777888888765554 3456666666666543
Done!