Query 001234
Match_columns 1118
No_of_seqs 42 out of 44
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.9 1.9E-05 6.5E-10 97.4 10.2 42 687-728 1120-1161(1184)
2 1i84_S Smooth muscle myosin he 97.8 4.4E-05 1.5E-09 94.2 10.1 33 561-594 1148-1180(1184)
3 3na7_A HP0958; flagellar bioge 94.9 2.5 8.6E-05 44.2 20.5 90 497-604 97-186 (256)
4 3vkg_A Dynein heavy chain, cyt 94.5 5.9 0.0002 54.7 27.2 30 213-243 1665-1694(3245)
5 2dfs_A Myosin-5A; myosin-V, in 93.6 1.2 4.1E-05 55.5 17.3 92 493-608 987-1078(1080)
6 3na7_A HP0958; flagellar bioge 93.0 9.9 0.00034 39.7 22.4 122 404-527 6-134 (256)
7 3vkg_A Dynein heavy chain, cyt 92.3 17 0.00058 50.4 26.2 24 553-576 2080-2103(3245)
8 2dfs_A Myosin-5A; myosin-V, in 91.5 6.4 0.00022 49.3 19.7 25 494-518 1020-1044(1080)
9 3oja_B Anopheles plasmodium-re 88.5 8.5 0.00029 43.4 16.0 70 448-520 463-532 (597)
10 3oja_B Anopheles plasmodium-re 87.8 3.4 0.00012 46.6 12.2 18 494-511 562-579 (597)
11 2efr_A General control protein 84.4 37 0.0013 34.2 19.0 135 133-306 3-137 (155)
12 3oja_A Leucine-rich immune mol 79.1 36 0.0012 37.7 15.5 63 488-550 419-481 (487)
13 3oja_A Leucine-rich immune mol 71.4 69 0.0024 35.5 15.2 52 660-711 433-484 (487)
14 2eqb_B RAB guanine nucleotide 71.4 51 0.0017 31.2 11.9 92 82-187 3-94 (97)
15 3q8t_A Beclin-1; autophagy, AT 68.6 32 0.0011 31.9 9.9 63 664-726 6-68 (96)
16 2v71_A Nuclear distribution pr 66.8 1.2E+02 0.0043 31.4 16.5 70 440-520 104-177 (189)
17 2ocy_A RAB guanine nucleotide 65.9 1E+02 0.0034 31.2 13.5 83 118-217 60-142 (154)
18 3mq9_A Bone marrow stromal ant 64.0 43 0.0015 37.0 11.6 96 134-230 370-469 (471)
19 2fxo_A Myosin heavy chain, car 63.0 1.1E+02 0.0037 29.3 15.6 40 493-532 79-118 (129)
20 2b9c_A Striated-muscle alpha t 63.0 24 0.0008 35.1 8.4 41 167-207 8-48 (147)
21 2v71_A Nuclear distribution pr 62.3 1.5E+02 0.0052 30.8 16.5 112 194-315 46-157 (189)
22 3hnw_A Uncharacterized protein 54.6 70 0.0024 31.4 10.0 59 494-552 72-130 (138)
23 2e7s_A RAB guanine nucleotide 46.4 45 0.0016 33.1 7.2 77 119-212 49-125 (135)
24 3ghg_A Fibrinogen alpha chain; 45.4 1.8E+02 0.0061 34.6 12.8 135 339-497 50-187 (562)
25 3tnu_B Keratin, type II cytosk 39.1 2.5E+02 0.0087 26.7 11.0 116 237-372 13-129 (129)
26 1x8y_A Lamin A/C; structural p 32.9 2.8E+02 0.0095 25.1 9.7 80 284-372 2-82 (86)
27 3i00_A HIP-I, huntingtin-inter 31.7 2.1E+02 0.0073 27.6 9.2 64 449-522 16-79 (120)
28 3teq_A Stromal interaction mol 31.3 45 0.0015 31.8 4.3 44 149-192 22-80 (101)
29 3q8t_A Beclin-1; autophagy, AT 29.1 3.5E+02 0.012 25.0 12.4 38 508-545 15-52 (96)
30 4erc_A Dual specificity protei 28.9 29 0.00099 31.8 2.6 35 1-36 1-36 (150)
31 3u1c_A Tropomyosin alpha-1 cha 27.6 2E+02 0.007 26.6 8.0 71 143-213 24-95 (101)
32 1m1j_B Fibrinogen beta chain; 25.7 5.1E+02 0.017 30.1 12.4 28 254-281 129-156 (464)
33 2jee_A YIIU; FTSZ, septum, coi 25.3 3.6E+02 0.012 24.8 9.0 56 469-524 13-68 (81)
34 1f5n_A Interferon-induced guan 24.0 7.8E+02 0.027 29.1 13.8 121 403-526 456-582 (592)
35 3hnw_A Uncharacterized protein 23.8 3.7E+02 0.013 26.3 9.4 11 413-423 35-45 (138)
36 3nmd_A CGMP dependent protein 22.3 1.8E+02 0.0063 26.3 6.3 47 288-334 19-65 (72)
37 3htk_A Structural maintenance 20.7 3.6E+02 0.012 22.2 7.7 47 425-471 10-56 (60)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.93 E-value=1.9e-05 Score=97.38 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001234 687 RRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESE 728 (1118)
Q Consensus 687 ~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vE 728 (1118)
.++.+..++...+++......++..++..+..+...+...++
T Consensus 1120 ~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444443333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.79 E-value=4.4e-05 Score=94.16 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 001234 561 SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE 594 (1118)
Q Consensus 561 rLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE 594 (1118)
.|..+...++..+.. +...+...-+...+|+.|
T Consensus 1148 ~L~~ele~L~~~Iee-l~~vn~aq~el~~~~e~~ 1180 (1184)
T 1i84_S 1148 DLSEELEALKTELED-TLDTTATQQELRGSDYKD 1180 (1184)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHhhhccc
Confidence 444444444444432 333344444444444433
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.90 E-value=2.5 Score=44.20 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001234 497 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 576 (1118)
Q Consensus 497 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 576 (1118)
.||+........|..+.-++-...+..+.+++.+....+.++.+ .+.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444444444444333333 334445555566667777
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 001234 577 VDSLNREREEFMNKMVHEHSEWFTKIQQ 604 (1118)
Q Consensus 577 lEsL~~ekEsF~~kMehErs~~~eKiq~ 604 (1118)
++.|.-.|+.|...|...=...+++|..
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888888888666666666643
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.46 E-value=5.9 Score=54.66 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=15.3
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHH
Q 001234 213 IASFKADCEEKEREIIRERQSLSDRKKILQQ 243 (1118)
Q Consensus 213 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe 243 (1118)
..+|.+.++.+.=++.+- =++.+|..-|+.
T Consensus 1665 LAa~i~~~~vfqi~i~k~-Y~~~~f~eDLk~ 1694 (3245)
T 3vkg_A 1665 FVAWMNGLSIYTIKVNNN-YKSSDFDDDLRM 1694 (3245)
T ss_dssp HHHHHTTCEEECCC-----CCHHHHHHHHHH
T ss_pred HHHHHhCCeeEEEeeeCC-CCHHHHHHHHHH
Confidence 456777777666555432 235566555543
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.64 E-value=1.2 Score=55.53 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001234 493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 572 (1118)
Q Consensus 493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 572 (1118)
..|.+||+..|.+-..+.+|-+.|++....... .|.+|-..|++ |-..|++..+++...
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~------------------e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKE------------------QNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 345555555555555555555555444333331 22233333333 444555555555554
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 001234 573 HKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 608 (1118)
Q Consensus 573 ~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad 608 (1118)
+...-+.+. +.+-..|++++..+..-...||+.
T Consensus 1046 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1046 IHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 566777777777777766666664
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.04 E-value=9.9 Score=39.74 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=54.9
Q ss_pred hHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001234 404 QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ----KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 479 (1118)
Q Consensus 404 k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~----~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 479 (1118)
+++.|-+.. .++.++..|...-+.|.++=..++.+...+. +-+..+..++.++.+....+..-..+|..-+.+|.
T Consensus 6 ~L~~L~~LQ-~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 6 HLKQLIEIS-HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 3455555555555555444444433333333 33333334444444444444444444444444443
Q ss_pred hhhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001234 480 AMKSEAGELSVLEIK---LKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 527 (1118)
Q Consensus 480 iteeER~E~lrLQse---LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 527 (1118)
... ---||..|+-+ ++.+|..+.....++|...+.++......+...
T Consensus 85 ~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 85 EIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 12234444433 345555555555555555555554444444333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.31 E-value=17 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=14.5
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhh
Q 001234 553 KSLKDERDSLRQERDAMRDQHKRD 576 (1118)
Q Consensus 553 k~~~~E~erLK~EK~~~r~~~kre 576 (1118)
.-+.+|..|=...-..+..++..=
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHhc
Confidence 335567777666666666655543
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.54 E-value=6.4 Score=49.26 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHH
Q 001234 494 KLKEELDVVRAQKLELMVETDKLQL 518 (1118)
Q Consensus 494 eLKeEId~~R~Qke~LlkEae~Lk~ 518 (1118)
.|.+.|..+..+...|....|+|..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.55 E-value=8.5 Score=43.37 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001234 448 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 520 (1118)
Q Consensus 448 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eK 520 (1118)
.++..++.++....+.+.....+|....+.+.+.+++..+ ....|++++.+.+.....+..+...++++.
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR---SSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCC---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 4555555555555555666666666666665555443332 234556666655555555544444444443
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.81 E-value=3.4 Score=46.60 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001234 494 KLKEELDVVRAQKLELMV 511 (1118)
Q Consensus 494 eLKeEId~~R~Qke~Llk 511 (1118)
+|++|+...+.+...|+.
T Consensus 562 ~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.36 E-value=37 Score=34.22 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001234 133 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 212 (1118)
Q Consensus 133 adLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRe 212 (1118)
..||.-|++. ++-|. .|..++.. ++.-+..+|.++.+|+++..+.---...+...|+.+++++..-...
T Consensus 3 ~~lE~qlkea-ae~ad------~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr 71 (155)
T 2efr_A 3 KQLEDKVEEL-LSKNY------HLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71 (155)
T ss_dssp HHHHHHHHHH-HHHHH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 4577777777 44444 44456555 6666667788888888877666655566666666666655432211
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhh
Q 001234 213 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 292 (1118)
Q Consensus 213 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 292 (1118)
-+.|+.+ +....-+|.+.+.|. ..-.+.+..+++.++.+.-.+.......+.
T Consensus 72 -------Ed~yEeq-------Ik~L~~kLKEAE~RA--------------E~AERsv~kLEk~id~lEd~L~~~Kek~~~ 123 (155)
T 2efr_A 72 -------EDKYEEE-------IKVLSDKLKEAETRA--------------EFAERSVTKLEKSIDDLEDELYAQKLKYKA 123 (155)
T ss_dssp -------HHHHHHH-------HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHH-------HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 223333444444444 344444555555555555555555555555
Q ss_pred hhhhhhHhHHHhhh
Q 001234 293 EKSNLDLTLVSLLK 306 (1118)
Q Consensus 293 ke~dl~~rl~~l~~ 306 (1118)
-...|...+..|+.
T Consensus 124 i~~eLd~tl~el~~ 137 (155)
T 2efr_A 124 ISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55556666666554
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.07 E-value=36 Score=37.75 Aligned_cols=63 Identities=8% Similarity=-0.039 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001234 488 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVV 550 (1118)
Q Consensus 488 ~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~ 550 (1118)
+..+.+++-.|++..++.......+.+.|++++++-+++-+.+|..-++..-...+...++..
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 333445555555555555556666666666666666666666666655555555555544433
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.44 E-value=69 Score=35.50 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001234 660 AEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEE 711 (1118)
Q Consensus 660 a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 711 (1118)
+.+.|+.++.+..+|..|...+...-..++.+.++++...-.+.++...|-.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 4444455555555554444444444455556666666666666655555543
No 14
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.35 E-value=51 Score=31.20 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 001234 82 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEAR 161 (1118)
Q Consensus 82 wtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~ 161 (1118)
+.+.|+.++..+...+.-++. ++.--.-|...|.-|+.--...|..+..|..|.-+. +-|=|.+||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~-----------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL---TasLFeEAN 68 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD-----------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEAN 68 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 345677777777666643322 444444566677777776677788888888887773 335689999
Q ss_pred HHHHHHhhhhHHHHHhhhhhhHHHHH
Q 001234 162 CMVENAQKKFAEAEAKLHAAESLQAE 187 (1118)
Q Consensus 162 aLv~~~eeKslEvE~KL~aAea~~AE 187 (1118)
.||+.+......+|.|...-.+-+++
T Consensus 69 ~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 69 NMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999977777777776665555544
No 15
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.61 E-value=32 Score=31.92 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001234 664 LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAE 726 (1118)
Q Consensus 664 ~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~ 726 (1118)
++.+..++..|..|-..+...-+.++.+.+.+...|..|...+..|..+-+.|.++++.|..+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345556666666777777777777888888888899999999999999999999999888543
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.84 E-value=1.2e+02 Score=31.37 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 001234 440 KSLLQKEKEEVNIIKSDLQKS----LSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDK 515 (1118)
Q Consensus 440 k~~L~~eKEel~~lK~dlEK~----~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~ 515 (1118)
+..|....-+|...++|+|.. -+++++-..+.+.+.|+...++ ++|.+ =+.++..-.-|.-|+-+
T Consensus 104 ~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE----------~El~E-Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 104 KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE----------SELDE-KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHHHHHHHHHHH
Confidence 333444444444444444432 3445555556666666666655 44442 33333333445555555
Q ss_pred HHHHH
Q 001234 516 LQLEK 520 (1118)
Q Consensus 516 Lk~eK 520 (1118)
|+++-
T Consensus 173 Lk~El 177 (189)
T 2v71_A 173 LRQEL 177 (189)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 17
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.90 E-value=1e+02 Score=31.22 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=50.7
Q ss_pred hHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhh
Q 001234 118 EESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 197 (1118)
Q Consensus 118 EEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aer 197 (1118)
-.-|..+|.-|+.--...|+.+..|..|.-+. +-|=|.+||.||+.+...-.. +-++...+..
T Consensus 60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~~~~~--------------~e~r~~~L~~ 122 (154)
T 2ocy_A 60 VKRLREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEANNMVADARKEKYA--------------IEILNKRLTE 122 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence 33355555555555556677777777776663 335689999999876444333 4445555666
Q ss_pred hhHHHhhhhhHHHHHHhHhh
Q 001234 198 KLQEVVAREDDLSRRIASFK 217 (1118)
Q Consensus 198 KL~eVEaRE~~LrRerlSf~ 217 (1118)
.|.+.+.+-+.|+.+.-.++
T Consensus 123 ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 123 QLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655544433
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.96 E-value=43 Score=36.99 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh----HHHhhhhhHH
Q 001234 134 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL----QEVVAREDDL 209 (1118)
Q Consensus 134 dLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL----~eVEaRE~~L 209 (1118)
+.+.||.++......+ +..-.+-++|.....-+++++.++.+.+..+++..+-|||.--.+.-.| -.-++|-..|
T Consensus 370 t~eeal~~~~~~i~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3mq9_A 370 TVDEALKDAQTRITAA-RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL 448 (471)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555554433 2333455688888999999999999999999999999999754433332 2233333333
Q ss_pred HHHHhHhhhhhhhHHHHHHHH
Q 001234 210 SRRIASFKADCEEKEREIIRE 230 (1118)
Q Consensus 210 rRerlSf~~E~ea~E~~~~~q 230 (1118)
.-++..++.+.+..++++.++
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 449 EGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=63.04 E-value=1.1e+02 Score=29.31 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001234 493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 532 (1118)
Q Consensus 493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 532 (1118)
.+|-..|..+-.+.+........|...|.+++.++..|-.
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555555554433
No 20
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=63.01 E-value=24 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=26.0
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001234 167 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 207 (1118)
Q Consensus 167 ~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~ 207 (1118)
+++.+.-++..|..|-.++.+|.-...+.+|..+-++.|..
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~ 48 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 48 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445556666777777777777777777777766666654
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.29 E-value=1.5e+02 Score=30.75 Aligned_cols=112 Identities=16% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH
Q 001234 194 SAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 273 (1118)
Q Consensus 194 ~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kE 273 (1118)
+++..|..++.|...|+.....+..|++....-+.... +++-+.....+..+...+ .--..+...-+.|.+..
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~----~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTR----AIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555544433322 222222222222222222 11122223333444444
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHH
Q 001234 274 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 315 (1118)
Q Consensus 274 keLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~ 315 (1118)
-+||.+...+ ..+|.+-+..++.-|...+.=|-+++.+.
T Consensus 119 DdlEr~~R~~---~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 119 DDLERAKRAT---IMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333 33344444455555555555555555433
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.62 E-value=70 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001234 494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 552 (1118)
Q Consensus 494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 552 (1118)
+++++++.++.+...+.+|..+||.+....-..-+.+...-++|+++......+-..++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777777777766666655555555555555555555544444443
No 23
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.43 E-value=45 Score=33.09 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=45.2
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhh
Q 001234 119 ESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK 198 (1118)
Q Consensus 119 EnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerK 198 (1118)
..|..+|.-|+.--...|.....|..|.-+. +-|=|.+||.||+.+......+| ++...+.+.
T Consensus 49 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L---TasLFeEAN~MVa~ar~~~~~~e--------------~r~~~L~~q 111 (135)
T 2e7s_A 49 KRLREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEANNLVADARMEKYAIE--------------ILNKRLTEQ 111 (135)
T ss_dssp HTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHH--------------HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 3355666666666666677777777777663 33568999999988755444444 445555555
Q ss_pred hHHHhhhhhHHHHH
Q 001234 199 LQEVVAREDDLSRR 212 (1118)
Q Consensus 199 L~eVEaRE~~LrRe 212 (1118)
|.+.+++-+.|+.+
T Consensus 112 l~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 112 LREKDMLLDTLTLQ 125 (135)
T ss_dssp TTHHHHCC------
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555555444
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.41 E-value=1.8e+02 Score=34.56 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=73.8
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHH---HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001234 339 EIQKIIANHESALRVKQSEFEAEL---AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 415 (1118)
Q Consensus 339 EIQKLldeh~a~L~~Kk~EFElEl---E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 415 (1118)
+||-||+.|+--|..+..++=.++ .+.+++.+.=+..+...|..+-......+..+.+--.+|+.+...|+++
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek---- 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK---- 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH----
Confidence 689999999988887777665544 4456666666777777776666655555555555555555554444432
Q ss_pred HHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 001234 416 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKL 495 (1118)
Q Consensus 416 ~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseL 495 (1118)
|..+..+|..=+-.|..+-.+|+++-+.|..|.+--.--+.+-=.-+=+...|.-+|-+|
T Consensus 126 --------------------VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 126 --------------------VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 222222222222333334444455555555555444333444334444555565555555
Q ss_pred HH
Q 001234 496 KE 497 (1118)
Q Consensus 496 Ke 497 (1118)
.|
T Consensus 186 eQ 187 (562)
T 3ghg_A 186 EQ 187 (562)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.06 E-value=2.5e+02 Score=26.65 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhh-HHHHHHHH
Q 001234 237 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR-EEAVIERE 315 (1118)
Q Consensus 237 weKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~r-Ee~~~~~~ 315 (1118)
|..++.+........-.-|..=...+.+.-+.+..++-+|+ .|+.....|...+++.-.+ +.++....
T Consensus 13 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~-----------~l~~~~~~LE~~l~e~e~~~~~~l~~~q 81 (129)
T 3tnu_B 13 YQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEID-----------NVKKQCANLQNAIADAEQRGELALKDAR 81 (129)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHH
Q 001234 316 ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 372 (1118)
Q Consensus 316 ~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeE 372 (1118)
..+...|.+|..+ +.+++..+.++..-|+.|.. ++.|+..-||.++-|
T Consensus 82 ~~i~~lE~eL~~~--------r~e~~~ql~EYq~LlnvKl~-Ld~EIatYRkLLEgE 129 (129)
T 3tnu_B 82 NKLAELEEALQKA--------KQDMARLLREYQELMNTKLA-LDVEIATYRKLLEGE 129 (129)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHCcC
No 26
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.88 E-value=2.8e+02 Score=25.05 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhHhHHHhhhh-HHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHH
Q 001234 284 EEKFKALNEEKSNLDLTLVSLLKR-EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAEL 362 (1118)
Q Consensus 284 e~~~~~Lk~ke~dl~~rl~~l~~r-Ee~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElEl 362 (1118)
..+...|+...+.+..+++++-.+ +.++......+...|.+|..+ +.+++..+.++..-|+.|.. +|.|+
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~--------r~e~~~ql~EYq~LlnvK~~-Le~EI 72 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEM--------RARMQQQLDEYQELLDIKLA-LDMEI 72 (86)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh-hHHHH
Q ss_pred HHHhhhHHHH
Q 001234 363 AIKYKLAEDE 372 (1118)
Q Consensus 363 E~krKs~eeE 372 (1118)
..-||.++-|
T Consensus 73 atYRkLLEGE 82 (86)
T 1x8y_A 73 HAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
No 27
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.72 E-value=2.1e+02 Score=27.64 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 001234 449 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAK 522 (1118)
Q Consensus 449 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKek 522 (1118)
.|..|+.+|+.++..++.=+.........|+-- . +.|.-|++..|+++...+.|.+.|+.+.+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~------i----~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGH------V----SELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666554433333333333221 1 456677788888888888888888876653
No 28
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=31.27 E-value=45 Score=31.78 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=34.2
Q ss_pred hhhhhhhhhhHHHHHHHHHhhh---------------hHHHHHhhhhhhHHHHHHhcch
Q 001234 149 TKVAADSKFAEARCMVENAQKK---------------FAEAEAKLHAAESLQAEANRYH 192 (1118)
Q Consensus 149 vK~tsesKLaEA~aLv~~~eeK---------------slEvE~KL~aAea~~AEa~Rk~ 192 (1118)
-|.+|+.+|.+|..-++.+.+| +.+||.++++|...+.++.+-.
T Consensus 22 kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l 80 (101)
T 3teq_A 22 KKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAAL 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999998 3467777777777777776543
No 29
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.05 E-value=3.5e+02 Score=25.01 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=19.6
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001234 508 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 545 (1118)
Q Consensus 508 ~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 545 (1118)
.|..|-..|-++...-|+|.+.||.=.+.++.|+....
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~ 52 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555555555555555555544
No 30
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=28.89 E-value=29 Score=31.77 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCCCCCcccccCCCccccCCCC-cHHHHHHHHHccC
Q 001234 1 MASPSSGRLAITPSSRVLQSPLS-DESIWKRLKEAGL 36 (1118)
Q Consensus 1 ~~~p~~~~l~~~~g~rv~~~~~~-d~~iWkr~~eaG~ 36 (1118)
|+.||.+--.|+||. +.+++.. ..+++..|+..|+
T Consensus 1 m~~pp~~~~~i~~~~-l~~~~~p~~~~~~~~L~~~gi 36 (150)
T 4erc_A 1 MGVQPPNFSWVLPGR-LAGLALPRLPAHYQFLLDLGV 36 (150)
T ss_dssp CCCCCTTCEEEETTT-EEEESCCCSHHHHHHHHHTTE
T ss_pred CCCCCCCCEEeccCc-eeeecCCCCHHHHHHHHHCCC
Confidence 889999888899984 6667776 7888999999995
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.59 E-value=2e+02 Score=26.59 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=0.0
Q ss_pred Hhhhhhhh-hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHH
Q 001234 143 RAESAETK-VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRI 213 (1118)
Q Consensus 143 r~E~AevK-~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRer 213 (1118)
|++.++.+ -.++.....+-.=|.+++.|..-+|.-|-.+...+.+++.+..+.+....+.|+--..|.|.+
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 32
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.67 E-value=5.1e+02 Score=30.10 Aligned_cols=28 Identities=18% Similarity=0.054 Sum_probs=12.0
Q ss_pred hhhhhhHhhHhhHHHHhHhHHHHHHHhh
Q 001234 254 LLNEREDHILSKLQELSRKEKELEASRA 281 (1118)
Q Consensus 254 ~LNqREe~~~e~~~~l~~kEkeLEe~kk 281 (1118)
.+++++..+.++...++.....||..+.
T Consensus 129 slk~~Q~Qi~en~n~~~~~~~~~e~~~~ 156 (464)
T 1m1j_B 129 KLVKTQKQRKDNDIILSEYNTEMELHYN 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.33 E-value=3.6e+02 Score=24.80 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001234 469 KQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 524 (1118)
Q Consensus 469 ~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 524 (1118)
.+|..+-+....++-|=.|+-.--..|.++.+..|.....|..|...|+++...|.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444455566666666666666666666666665543
No 34
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.97 E-value=7.8e+02 Score=29.09 Aligned_cols=121 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-h
Q 001234 403 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-M 481 (1118)
Q Consensus 403 ~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki-t 481 (1118)
++.+-|.+-=+..+....++-.-+++|...+|.++.+...-.+-..+...|..-..+.-.-+++|.+...+-..+|.. |
T Consensus 456 ~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHH-----HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001234 482 KSEAGELSV-----LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 526 (1118)
Q Consensus 482 eeER~E~lr-----LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 526 (1118)
+.||.-+++ |..+||++=+.++.. ...+++.|+.|...+...
T Consensus 536 e~~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 536 ENDRVQLLKEQERTLALKLQEQEQLLKEG---FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.85 E-value=3.7e+02 Score=26.34 Aligned_cols=11 Identities=0% Similarity=-0.013 Sum_probs=5.1
Q ss_pred hhHHHHhhhhH
Q 001234 413 KDLVERSHLLE 423 (1118)
Q Consensus 413 kdl~~Ksk~LK 423 (1118)
..++.|...++
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 36
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.29 E-value=1.8e+02 Score=26.26 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=38.2
Q ss_pred HHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001234 288 KALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 334 (1118)
Q Consensus 288 ~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~a 334 (1118)
.++.+-+..|..+...|..++.-+..++..|..|+.++..|+-.|..
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888888999999999999999999998888777654
No 37
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.65 E-value=3.6e+02 Score=22.19 Aligned_cols=47 Identities=28% Similarity=0.298 Sum_probs=29.0
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001234 425 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 471 (1118)
Q Consensus 425 kEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi 471 (1118)
.+..+....-.....+..+.+.+..+..+..+|++++.+|..-+.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444334445566666777777777777777777776665555
Done!