Query 001234
Match_columns 1118
No_of_seqs 42 out of 44
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 17:48:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001234.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001234hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cosa1 a.5.2.1 (A:8-48) Serin 35.4 17 0.0012 27.6 3.7 32 25-56 3-41 (41)
2 d1xria_ c.45.1.1 (A:) Putative 32.6 9.2 0.00067 34.0 2.2 33 1-36 2-34 (151)
3 d1zu2a1 a.118.8.1 (A:1-145) Mi 17.5 74 0.0054 27.4 5.2 45 51-100 65-109 (145)
4 d1qvra2 c.37.1.20 (A:149-535) 15.6 1.9E+02 0.014 29.6 8.7 21 489-509 312-332 (387)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 12.9 3.5E+02 0.026 22.5 7.9 53 426-478 1-58 (72)
6 d1aopa2 d.58.36.1 (A:346-425) 9.4 29 0.0021 29.0 -0.2 31 7-37 43-76 (80)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 8.8 2.1E+02 0.015 23.3 5.1 43 691-733 43-88 (88)
8 d1bjta_ e.11.1.1 (A:) DNA topo 8.1 2.1E+02 0.015 32.0 6.3 21 517-537 738-758 (760)
9 d1qvra2 c.37.1.20 (A:149-535) 7.4 5.7E+02 0.041 25.8 9.0 59 658-716 256-329 (387)
10 d2fa8a1 c.47.1.23 (A:4-89) Hyp 7.3 14 0.00099 32.0 -3.3 47 3-49 31-79 (86)
No 1
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.43 E-value=17 Score=27.63 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=25.6
Q ss_pred HHHHHHHHHccCChHHHhh-------hcHHHHHHHHHHh
Q 001234 25 ESIWKRLKEAGLDEVSIKR-------RDKAALIAYIAKL 56 (1118)
Q Consensus 25 ~~iWkr~~eaG~De~S~~r-------rD~~aLia~IskL 56 (1118)
-.+.+-|.-||||++-.-| |.-+|.|+||||.
T Consensus 3 RQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 3 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHhcC
Confidence 3577889999999986543 7788999999984
No 2
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.58 E-value=9.2 Score=34.01 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCCCCCCcccccCCCccccCCCCcHHHHHHHHHccC
Q 001234 1 MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGL 36 (1118)
Q Consensus 1 ~~~p~~~~l~~~~g~rv~~~~~~d~~iWkr~~eaG~ 36 (1118)
|.||+.++ .|.+| |.||+..+.+.|..|+..|+
T Consensus 2 ~~pp~nF~-~V~~~--lyRs~~~t~~~~~~L~~lgI 34 (151)
T d1xria_ 2 LIPPLNFS-MVDNG--IFRSGFPDSANFSFLQTLGL 34 (151)
T ss_dssp BCCCTTCE-EEETT--EEEESCCCHHHHHHHHHHTC
T ss_pred CCCCcccc-eecCC--ceecCCCCHHHHHHHHHCCC
Confidence 34555554 48887 89999999999999999996
No 3
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.54 E-value=74 Score=27.36 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=30.9
Q ss_pred HHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHH
Q 001234 51 AYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQ 100 (1118)
Q Consensus 51 a~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~l 100 (1118)
.++-+|.-. -++.-||||.++.+...+..........+..|...+
T Consensus 65 ~kAl~l~P~-----~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~ 109 (145)
T d1zu2a1 65 EEALLIDPK-----KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 109 (145)
T ss_dssp HHHHHHCTT-----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcch-----hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence 345556666 667789999999998887766655555555555444
No 4
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=15.56 E-value=1.9e+02 Score=29.61 Aligned_cols=21 Identities=19% Similarity=-0.029 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001234 489 SVLEIKLKEELDVVRAQKLEL 509 (1118)
Q Consensus 489 lrLQseLKeEId~~R~Qke~L 509 (1118)
..-..+||++|+.+|.+.+..
T Consensus 312 l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 312 LRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333467888888888876543
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.94 E-value=3.5e+02 Score=22.45 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=39.0
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHhhh
Q 001234 426 ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ-----KSLSSLDEKKKQVNCAKDKL 478 (1118)
Q Consensus 426 EksL~aeEK~le~ek~~L~~eKEel~~lK~dlE-----K~~a~~e~q~~qi~ee~E~L 478 (1118)
|+||......|+..+.+|..-+.++..++.|.- +++..++..+.++.--.++|
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL 58 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL 58 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888898889998888888888888775 55556665655555544443
No 6
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=9.35 E-value=29 Score=28.97 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=22.4
Q ss_pred CcccccCCCccccCCCCcHH---HHHHHHHccCC
Q 001234 7 GRLAITPSSRVLQSPLSDES---IWKRLKEAGLD 37 (1118)
Q Consensus 7 ~~l~~~~g~rv~~~~~~d~~---iWkr~~eaG~D 37 (1118)
|.+-+||.|.++=..+++++ +|.+|+++||+
T Consensus 43 g~irlT~~Qnlil~~V~~~~~~~i~~~L~~~Gl~ 76 (80)
T d1aopa2 43 GDFRITANQNLIIAGVPESEKAKIEKIAKESGLM 76 (80)
T ss_dssp SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT
T ss_pred CcEEEcCCCCeEecCCCHHHHHHHHHHHHHcCCC
Confidence 44557888876655555554 79999999983
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.81 E-value=2.1e+02 Score=23.29 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHHHHhhHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHhhhh
Q 001234 691 EWAELNNSIEELMVQRQ---KLEEQRQLLHADREEIQAESERLKKL 733 (1118)
Q Consensus 691 e~aEm~kdIeeL~~ls~---KLk~QRE~~~~ERe~fl~~vEklK~c 733 (1118)
-+.-+..-|+-+..|.. .|....+.+......+...+.+|.+|
T Consensus 43 K~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555555555554444 44555566666666777777777776
No 8
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.08 E-value=2.1e+02 Score=31.98 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 001234 517 QLEKAKFEAEWEMIDEKREEL 537 (1118)
Q Consensus 517 k~eKekFE~EWE~LDEKRael 537 (1118)
+.+...|+++|...++++++-
T Consensus 738 ~~DL~~l~~~y~k~~~~~~e~ 758 (760)
T d1bjta_ 738 NTDLKAFEVGYQEFLQRDAEA 758 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 566678888888888887763
No 9
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=7.44 E-value=5.7e+02 Score=25.83 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---------------HHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001234 658 EKAEKELEQVTLEI---------------KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 716 (1118)
Q Consensus 658 E~a~kE~Eev~lE~---------------~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~ 716 (1118)
+...+++.++..|+ ..++.+...+......+..+|...+..|+.+..+..+|.+-|..+
T Consensus 256 ~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~l 329 (387)
T d1qvra2 256 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 329 (387)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.33 E-value=14 Score=32.03 Aligned_cols=47 Identities=19% Similarity=0.525 Sum_probs=0.0
Q ss_pred CCCCCcccccCCC-ccccCCCCcHHHHHHHHHccC-ChHHHhhhcHHHH
Q 001234 3 SPSSGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAAL 49 (1118)
Q Consensus 3 ~p~~~~l~~~~g~-rv~~~~~~d~~iWkr~~eaG~-De~S~~rrD~~aL 49 (1118)
+...+.++..||. ++..=-+.+.-+|.|..+-|| |...|+.+=|..+
T Consensus 31 ~~~i~evsL~P~~~G~FeV~v~g~li~srk~~ggFPd~kelkq~VRd~i 79 (86)
T d2fa8a1 31 ASDIGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 79 (86)
T ss_dssp GGGCSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred CccCceEEEEECCCeEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHhh
Done!