BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001235
         (1117 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P14712|PHYA_ARATH Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2
          Length = 1122

 Score = 1944 bits (5037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 924/1121 (82%), Positives = 1024/1121 (91%), Gaps = 4/1121 (0%)

Query: 1    MSSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQ 60
            MS SRP QSS  + +SRHSAR+IAQTT+DAKLHADFE SG+SFDYS SVRV+     +Q 
Sbjct: 1    MSGSRPTQSSEGSRRSRHSARIIAQTTVDAKLHADFEESGSSFDYSTSVRVTGPVVENQP 60

Query: 61   PRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDH 120
            PRSD+VTT YLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENA ELLTM +HAVPSVG+H
Sbjct: 61   PRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASELLTMASHAVPSVGEH 120

Query: 121  PVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLII 180
            PVLGIG+DI+++FTAPSASALQKALGFG+VSLLNPILVHC+TS KPFYAI+HRVTGS+II
Sbjct: 121  PVLGIGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCRTSAKPFYAIIHRVTGSIII 180

Query: 181  DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVM 240
            DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTM+QEVFELTGYDRVM
Sbjct: 181  DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 240

Query: 241  AYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV 300
            AYKFHEDDHGEVVSE+TK GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDC A+H +V
Sbjct: 241  AYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHARV 300

Query: 301  LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGD----NTLPQ 356
            LQDEKL FDLTLCGSTLRAPHSCHLQYM NM+SIASLVMAVVVN+E+ EGD     T PQ
Sbjct: 301  LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDATTQPQ 360

Query: 357  KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLL 416
            KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKE+EL+ Q++EKNILRTQTLL
Sbjct: 361  KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELDNQMVEKNILRTQTLL 420

Query: 417  CDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHM 476
            CDMLMRDAPLGIV+QSPNIMDLVKCDGAALLYK+KIW+LG TP++F L +I SWL EYHM
Sbjct: 421  CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEYHM 480

Query: 477  DSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPD 536
            DSTGLS DSL+DAG+  AL+LGD VCGMAAVRIS KDMIFWFRS TA EVRWGGAKH+PD
Sbjct: 481  DSTGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 540

Query: 537  EKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSI 596
            ++DD R+MHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKD  T D++TK I
Sbjct: 541  DRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTKVI 600

Query: 597  HSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKA 656
            +SKL DLKI+G++ELEAVTSEMVRLIETATVPILAVD DGLVNGWNTKIAELTGLSVD+A
Sbjct: 601  YSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEA 660

Query: 657  IGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRD 716
            IGKHFLTLVEDSS++ VKRML  AL+G EEQN+QFEIKTH S+ +  PI+L+VNACASRD
Sbjct: 661  IGKHFLTLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 720

Query: 717  LHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNP 776
            LH+NVVGVCFVA D+T QKTVMDKFTRIEGDYKAI+QNPNPLIPPIFG+DEFGWC EWNP
Sbjct: 721  LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWNP 780

Query: 777  AMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFG 836
            AM KLTG KREEVIDK+LL EVFGT  +CCRLKNQEAFVNLGIVLN A++ QDPEKV F 
Sbjct: 781  AMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPEKVSFA 840

Query: 837  FFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKAL 896
            FF R GKY ECLLCV+KKLDREG VTGVFCFLQLASHELQQALHVQRL+E+TA+KRLKAL
Sbjct: 841  FFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTAVKRLKAL 900

Query: 897  AYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGY 956
            AY KRQIRNPLSGI+F+RKM+EGTELG EQ+R+L TSA CQ+QL KILDDSDL+SII+G 
Sbjct: 901  AYIKRQIRNPLSGIMFTRKMIEGTELGPEQRRILQTSALCQKQLSKILDDSDLESIIEGC 960

Query: 957  LDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFL 1016
            LDLEM EFTLNEVL AS SQVMMKSN K +RI NET E++MS+TLYGDSIRLQQVLADF+
Sbjct: 961  LDLEMKEFTLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLADFM 1020

Query: 1017 SISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTS 1076
             +++NF P+GGQL VS+SL KDQLG+SVHLA LE+R+TH G GIPE LL+QMFG+E D S
Sbjct: 1021 LMAVNFTPSGGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMFGTEEDVS 1080

Query: 1077 EEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
            EEG+SL++SRKLVKLMNGDVQYLR+AGKS+FI++ ELAAA+
Sbjct: 1081 EEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAELAAAN 1121


>sp|P93673|PHYA_LATSA Phytochrome type A OS=Lathyrus sativus GN=PHYA PE=3 SV=1
          Length = 1124

 Score = 1941 bits (5028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1120 (81%), Positives = 1018/1120 (90%), Gaps = 3/1120 (0%)

Query: 1    MSSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQ 60
            MS++RP+QSS+N+G+SR+SAR+IAQTT+DAKLHA FE SG+SFDYS+ VRVS +  GDQQ
Sbjct: 1    MSTTRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSWVRVSGSVDGDQQ 60

Query: 61   PRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDH 120
            PRS++VTTAYL+HIQ+GK IQPFGCLLALDEKT KV+AYSENAPE+LTMV+HAVPSVGDH
Sbjct: 61   PRSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDH 120

Query: 121  PVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLII 180
            P LGIG+DI+T+FTAPSASALQKALGF EVSLLNPILVHCKTSGKPFYAI+HRVTGSLII
Sbjct: 121  PALGIGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLII 180

Query: 181  DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVM 240
            DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSL SGSMERLCDTM+QEVFELTGYDRVM
Sbjct: 181  DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDRVM 240

Query: 241  AYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV 300
            AYKFHEDDHGEV++EI K GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDC A+HVKV
Sbjct: 241  AYKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVKV 300

Query: 301  LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNT---LPQK 357
            LQDEKLPFDLTLCGSTLRAPHSCHLQYM NM+SIASLVMAVVVND +E+GD+    LPQK
Sbjct: 301  LQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQK 360

Query: 358  RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLC 417
            +KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKE+ELEYQILEKNILRTQTLLC
Sbjct: 361  KKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLC 420

Query: 418  DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMD 477
            DMLMRDAPLGIV+QSPNIMDLVKCDGAAL Y+NK+W LG TP ++Q+ +I  W+SEYH D
Sbjct: 421  DMLMRDAPLGIVSQSPNIMDLVKCDGAALFYRNKLWLLGATPTEYQIREIALWMSEYHTD 480

Query: 478  STGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE 537
            STGLS DSL DAG+ GAL+L D VCGMAAVRI+ KD++FWFRS TA+E+RWGGAKHEP E
Sbjct: 481  STGLSTDSLLDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGE 540

Query: 538  KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIH 597
            +DDGRKMHPRSSFKAFLEVVK RS+PWKD+EMDAIHSLQLILRNA KD   +DL+TK+I+
Sbjct: 541  QDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKAIN 600

Query: 598  SKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAI 657
            ++L DLKIEGM+ELEAVTSEMVRLIETATVPILAVDVDG VNGWN KIAELTGL V +AI
Sbjct: 601  TRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAI 660

Query: 658  GKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDL 717
            GKH LTLVEDSS D VK+ML LALQG+EE+N+QFEIKTHG ++   PI+LIVNACASRDL
Sbjct: 661  GKHLLTLVEDSSTDIVKKMLNLALQGEEEKNVQFEIKTHGDQVEFGPISLIVNACASRDL 720

Query: 718  HDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPA 777
             +NVVGVCFVAQDIT QKTVMDKFTRIEGDYKAIVQNPN LIPPIFG+DEFGWCCEWN A
Sbjct: 721  RENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAA 780

Query: 778  MVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGF 837
            M+KLTGWKREEV+DK+LL EVFGT M+CCRLKNQEAFVN GIVLNKAM+G + EKV FGF
Sbjct: 781  MIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVAFGF 840

Query: 838  FARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALA 897
            F+R GKY ECLL V+KK+D EG VTGVFCFLQLAS ELQQALH+QRLSEQTALKRLK L 
Sbjct: 841  FSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLT 900

Query: 898  YTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYL 957
            Y KRQIRNPL+GI+FS KM+EGT+L  EQK++++TS+QCQRQL KILDDSDLD IIDGYL
Sbjct: 901  YMKRQIRNPLAGIVFSSKMLEGTDLETEQKQIVNTSSQCQRQLSKILDDSDLDGIIDGYL 960

Query: 958  DLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLS 1017
            DLEM EFTL+EVLV S+SQVM +SN KGIRI N+ AE I  E+LYGDS+RLQQVLADFL 
Sbjct: 961  DLEMAEFTLHEVLVTSLSQVMNRSNTKGIRIANDVAEHIAKESLYGDSLRLQQVLADFLL 1020

Query: 1018 ISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSE 1077
            ISIN  PNGGQ++++SSLTK+QLG+SVHL  LEL ITH G G+PE  L+QMFG+    SE
Sbjct: 1021 ISINSTPNGGQVVIASSLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESE 1080

Query: 1078 EGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
            EGISL ISRKL+KLMNGDV+YL+EAGKS+FI+SVELAAAH
Sbjct: 1081 EGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAH 1120


>sp|P33530|PHYA1_TOBAC Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1
          Length = 1124

 Score = 1926 bits (4989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 906/1106 (81%), Positives = 1012/1106 (91%), Gaps = 3/1106 (0%)

Query: 14   GKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHH 73
             +S+HSAR+IAQTTIDAKLHADFE SG SFDYS+SVRV+S AG +++P+SDRVTTAYL+ 
Sbjct: 14   ARSKHSARIIAQTTIDAKLHADFEESGDSFDYSSSVRVTSVAGDERKPKSDRVTTAYLNQ 73

Query: 74   IQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIF 133
            IQKGK IQPFGCLLALDEKTFKVIA+SENAPE+LTMV+HAVPSVG+ P LGIG+DI+TIF
Sbjct: 74   IQKGKFIQPFGCLLALDEKTFKVIAFSENAPEMLTMVSHAVPSVGELPALGIGTDIRTIF 133

Query: 134  TAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMT 193
            T PSA+ALQKALGFGEVSLLNP+LVHCKTSGKP+YAIVHRVTGSLIIDFEPVKPYEVPMT
Sbjct: 134  TGPSAAALQKALGFGEVSLLNPVLVHCKTSGKPYYAIVHRVTGSLIIDFEPVKPYEVPMT 193

Query: 194  AAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVV 253
            AAGALQSYKLAAKAITRLQ+LPSGSMERLCDTM+QEVFELTGYDRVM YKFH+DDHGEVV
Sbjct: 194  AAGALQSYKLAAKAITRLQALPSGSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVV 253

Query: 254  SEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLC 313
            +EITK GL+PYLGLHYPATDIPQAARFLFMKNKVRMI DCRA+HVKV+QDEKLPFDLTLC
Sbjct: 254  AEITKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLC 313

Query: 314  GSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEG---DNTLPQKRKRLWGLVVCHNT 370
            GSTLRAPH CHLQYMENM+SIASLVMAVVVND +EEG   D+T  QKRKRLWGLVVCHNT
Sbjct: 314  GSTLRAPHYCHLQYMENMSSIASLVMAVVVNDGDEEGESSDSTQSQKRKRLWGLVVCHNT 373

Query: 371  TPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVT 430
            TPRFVPFPLRYACEFLAQVFAIHVNKELELE QILEKNILRTQTLLCDMLMR APLGIV+
Sbjct: 374  TPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRVAPLGIVS 433

Query: 431  QSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAG 490
            QSPNIMDLVKCDGAALLYKNKI RLG+TP+DFQLHDIVSWLSEYH DSTGLS DSLYDAG
Sbjct: 434  QSPNIMDLVKCDGAALLYKNKIHRLGMTPSDFQLHDIVSWLSEYHTDSTGLSTDSLYDAG 493

Query: 491  YLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSF 550
            + GALALGDVVCGMAAVRIS K  +FW+RS TA+EVRWGGAKHEP EKDDGRKMHPRSSF
Sbjct: 494  FPGALALGDVVCGMAAVRISDKGWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSF 553

Query: 551  KAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKE 610
            KAFLEVVKTRS+PWKDYEMDAIHSLQLILRNA KD   +D +T  IH+KL DLKI+G++E
Sbjct: 554  KAFLEVVKTRSVPWKDYEMDAIHSLQLILRNASKDADAMDSNTNIIHTKLNDLKIDGLQE 613

Query: 611  LEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSI 670
            LEAVT+EMVRLIETA+VPI AVDVDG +NGWNTKIAELTGL VD+AIG H LTLVEDSS+
Sbjct: 614  LEAVTAEMVRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLLTLVEDSSV 673

Query: 671  DTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQD 730
            DTV +ML LALQG+EE+N++FEIKTHG   +  PI+LIVNACASRD+ D+VVGVCF+AQD
Sbjct: 674  DTVSKMLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDSVVGVCFIAQD 733

Query: 731  ITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVI 790
            IT QK +MDKFTRIEGDY+AI+QNP+PLIPPIFG+D+FGWC EWN AM KLTGW+R++VI
Sbjct: 734  ITGQKNIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVI 793

Query: 791  DKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLC 850
            DK+LL EVFGT  ACCRLKNQEAFVN G+VLN AM+GQ+  K+ FGFFARNGKY ECLLC
Sbjct: 794  DKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFARNGKYVECLLC 853

Query: 851  VNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGI 910
            V+K+LDREGAVTG+FCFLQLASHELQQALH+QRLSEQTALKRLK LAY +RQIRNPLSGI
Sbjct: 854  VSKRLDREGAVTGLFCFLQLASHELQQALHIQRLSEQTALKRLKVLAYIRRQIRNPLSGI 913

Query: 911  IFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVL 970
            IFSRKM+EGT LG EQK +L TS+QCQRQL+KILDD+DLDSIIDGYLDLEM+EF L+EVL
Sbjct: 914  IFSRKMLEGTNLGEEQKNILRTSSQCQRQLNKILDDTDLDSIIDGYLDLEMLEFKLHEVL 973

Query: 971  VASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLM 1030
            VASISQ+MMKSN K I IVN+  E +++ETLYGDS RLQQVLA+FL + +N  P+GGQL 
Sbjct: 974  VASISQIMMKSNGKNIMIVNDMVEDLLNETLYGDSPRLQQVLANFLLVCVNSTPSGGQLS 1033

Query: 1031 VSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVK 1090
            +S +LTKD++G+SV LA LE+RI+H GGG+PE LL QMFG+E + SEEGISLLISRKLVK
Sbjct: 1034 ISGTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGISLLISRKLVK 1093

Query: 1091 LMNGDVQYLREAGKSTFIVSVELAAA 1116
            LMNG+VQYLREAG+STFI+SVELA A
Sbjct: 1094 LMNGEVQYLREAGRSTFIISVELAVA 1119


>sp|P30733|PHYA_SOLTU Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2
          Length = 1123

 Score = 1918 bits (4968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 901/1103 (81%), Positives = 1002/1103 (90%), Gaps = 3/1103 (0%)

Query: 17   RHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQK 76
            +HSAR+IAQT+IDAKLHADFE SG SFDYS+SVRV++ A G+Q+P+SD+VTTAYLH IQK
Sbjct: 17   KHSARIIAQTSIDAKLHADFEESGDSFDYSSSVRVTNVAEGEQRPKSDKVTTAYLHQIQK 76

Query: 77   GKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAP 136
            GK IQPFGCLLALDEKT KVIA+SENAPE+LTMV+HAVPSVG+HPVLGIG DI+TIFT P
Sbjct: 77   GKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGIDIRTIFTGP 136

Query: 137  SASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196
            S +ALQKALGFGEVSLLNP+LVHCK SGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG
Sbjct: 137  SGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196

Query: 197  ALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEI 256
            ALQSYKLAAKAITRLQSLPSGSMERLCDTM+QEVFELTGYDRVM YKFH+DDHGEVVSEI
Sbjct: 197  ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHDDDHGEVVSEI 256

Query: 257  TKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGST 316
            TK GLEPYLGLHYPATDIPQAARFLFMKNKVRMI DCRA+HVKV+QDEKLPFDLTLCGST
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGST 316

Query: 317  LRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEG---DNTLPQKRKRLWGLVVCHNTTPR 373
            LRAPH CHLQYMENMNSIASLVMAVVVND +EEG   D++  QKRKRLWGLVV HNTTPR
Sbjct: 317  LRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVSHNTTPR 376

Query: 374  FVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSP 433
            F PFPLRYACEFLAQVFAI VNKELELE Q LEKNILRTQTLLCDMLMRDAPLGIV+QSP
Sbjct: 377  FAPFPLRYACEFLAQVFAILVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQSP 436

Query: 434  NIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLG 493
            NIMDL+KCDGAALLYKNKI RLG+ P+DFQLHDIVSWL EYH DSTGLS DSLYDAG+ G
Sbjct: 437  NIMDLIKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTGLSTDSLYDAGFPG 496

Query: 494  ALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAF 553
            ALALGD VCGMAAVRIS KD +FW+RS TA+EVRWGGAKHEP EKDDGRKMHPRSSFK F
Sbjct: 497  ALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKGF 556

Query: 554  LEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEA 613
            LEVVKTRS+PWKDYEMD IHSLQLILRNAFKD   ++ +T SIH+KL DLKI+GM+ELEA
Sbjct: 557  LEVVKTRSIPWKDYEMDRIHSLQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELEA 616

Query: 614  VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTV 673
            VT+EMVRLIETA+VPI AVDVDG VNGWNTK+AELTGL VD+AIGKH LTLVEDSS+DTV
Sbjct: 617  VTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLTLVEDSSVDTV 676

Query: 674  KRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITP 733
             +ML LALQGQEE+N++FEIKTHG   +  PI+LIVNACAS+D+ D+VVGVCF+AQDIT 
Sbjct: 677  NKMLELALQGQEERNVEFEIKTHGPSRDSSPISLIVNACASKDVRDSVVGVCFIAQDITG 736

Query: 734  QKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKL 793
            QK++MDKFTRIEGDY+AI+QNP+PLIPPIFG+D+FGWC EWN AM  LTGW+R++V+DK+
Sbjct: 737  QKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTMLTGWRRDDVMDKM 796

Query: 794  LLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNK 853
            LL EVFGT  ACCRLKNQEAFVN G++LN A++GQ+ EK+PFGFFAR GKY ECLLCV+K
Sbjct: 797  LLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFARYGKYVECLLCVSK 856

Query: 854  KLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFS 913
            +LD+EGAVTG+FCFLQLASHELQQALHVQRLSEQTALKRLK LAY +RQIRNPLSGIIFS
Sbjct: 857  RLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLAYIRRQIRNPLSGIIFS 916

Query: 914  RKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVAS 973
            RKM+EGT LG EQK +LHTSAQCQRQL KILDD+DLDSII+GYLDLEM+EF L+EVLVAS
Sbjct: 917  RKMLEGTSLGEEQKNILHTSAQCQRQLDKILDDTDLDSIIEGYLDLEMLEFKLHEVLVAS 976

Query: 974  ISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSS 1033
            ISQVMMKSN K I I N+  E +++ETLYGDS RLQQVLA+FL +S+N  P+GG+L +S 
Sbjct: 977  ISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNSTPSGGKLSISG 1036

Query: 1034 SLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMN 1093
             LTKD++G+SV LA LE RI H GGG+PE LL QMFGSE D SEEGISLL+SRKLVKLMN
Sbjct: 1037 KLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMFGSEADASEEGISLLVSRKLVKLMN 1096

Query: 1094 GDVQYLREAGKSTFIVSVELAAA 1116
            G+VQYLREAG+STFI+SVELA A
Sbjct: 1097 GEVQYLREAGRSTFIISVELAVA 1119


>sp|P15001|PHYA_PEA Phytochrome A OS=Pisum sativum GN=PHYA PE=3 SV=1
          Length = 1124

 Score = 1915 bits (4961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 913/1120 (81%), Positives = 1019/1120 (90%), Gaps = 3/1120 (0%)

Query: 1    MSSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQ 60
            MS++RP+QSS+N+G+SR+SAR+IAQTT+DAKLHA FE SG+SFDYS+SVRVS +  GDQQ
Sbjct: 1    MSTTRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGDQQ 60

Query: 61   PRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDH 120
            PRS++VTTAYL+HIQ+GK IQPFGCLLALDEKT KV+AYSENAPE+LTMV+HAVPSVGDH
Sbjct: 61   PRSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDH 120

Query: 121  PVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLII 180
            P LGIG+DI+T+FTAPSASALQKALGF EVSLLNPILVHCKTSGKPFYAI+HRVTGSLII
Sbjct: 121  PALGIGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLII 180

Query: 181  DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVM 240
            DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSL SGSMERLCDTM+QEVFELTGYDRVM
Sbjct: 181  DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDRVM 240

Query: 241  AYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV 300
            AYKFHEDDHGEV++EI K GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDC A+HVKV
Sbjct: 241  AYKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVKV 300

Query: 301  LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNT---LPQK 357
            LQDEKLPFDLTLCGSTLRAPHSCHLQYM NM+SIASLVMAVVVND +E+GD+    LPQK
Sbjct: 301  LQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQK 360

Query: 358  RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLC 417
            +KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKE+ELEYQILEKNILRTQTLLC
Sbjct: 361  KKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLC 420

Query: 418  DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMD 477
            DMLMRDAPLGIV+QSPNIMDLVKCDGAAL Y+NK+W LG TP + QL +I  W+SEYH D
Sbjct: 421  DMLMRDAPLGIVSQSPNIMDLVKCDGAALFYRNKLWLLGATPTESQLREIALWMSEYHTD 480

Query: 478  STGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE 537
            STGLS DSL DAG+ GAL+L D VCGMAAVRI+ KD++FWFRS TA+E+RWGGAKHEP +
Sbjct: 481  STGLSTDSLSDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGD 540

Query: 538  KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIH 597
            +DDGRKMHPRSSFKAFLEVVK RS+PWKD+EMDAIHSLQLILRNA KD   +DL+TK+I+
Sbjct: 541  QDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKAIN 600

Query: 598  SKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAI 657
            ++L DLKIEGM+ELEAVTSEMVRLIETATVPILAVDVDG VNGWN KIAELTGL V +AI
Sbjct: 601  TRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAI 660

Query: 658  GKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDL 717
            GKH LTLVEDSS D VK+ML LALQG+EE+N+QFEIKTHG ++   PI+LIVNACAS+DL
Sbjct: 661  GKHLLTLVEDSSTDIVKKMLNLALQGEEEKNVQFEIKTHGDQVESGPISLIVNACASKDL 720

Query: 718  HDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPA 777
             +NVVGVCFVAQDIT QKTVMDKFTRIEGDYKAIVQNPN LIPPIFG+DEFGWCCEWN A
Sbjct: 721  RENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAA 780

Query: 778  MVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGF 837
            M+KLTGWKREEV+DK+LL EVFGT M+CCRLKNQEAFVN GIVLNKAM+G + EKVPFGF
Sbjct: 781  MIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGF 840

Query: 838  FARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALA 897
            F+R GKY ECLL V+KK+D EG VTGVFCFLQLAS ELQQALH+QRLSEQTALKRLK L 
Sbjct: 841  FSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLT 900

Query: 898  YTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYL 957
            Y KRQIRNPL+GI+FS KM+EGT+L  EQKR+++TS+QCQRQL KILDDSDLD IIDGYL
Sbjct: 901  YMKRQIRNPLAGIVFSSKMLEGTDLETEQKRIVNTSSQCQRQLSKILDDSDLDGIIDGYL 960

Query: 958  DLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLS 1017
            DLEM EFTL+EVLV S+SQVM +SN KGIRI N+ AE I  ETLYGDS+RLQQVLADFL 
Sbjct: 961  DLEMAEFTLHEVLVTSLSQVMNRSNTKGIRIANDVAEHIARETLYGDSLRLQQVLADFLL 1020

Query: 1018 ISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSE 1077
            ISIN  PNGGQ+++++SLTK+QLG+SVHL  LEL ITH G G+PE  L+QMFG+    SE
Sbjct: 1021 ISINSTPNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMFGNNVLESE 1080

Query: 1078 EGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
            EGISL ISRKL+KLMNGDV+YL+EAGKS+FI+SVELAAAH
Sbjct: 1081 EGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAH 1120


>sp|P06592|PHYA_CUCPE Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1
          Length = 1124

 Score = 1912 bits (4954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1099 (82%), Positives = 998/1099 (90%), Gaps = 2/1099 (0%)

Query: 21   RVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKLI 80
            R+IAQT++DA + ADFE SG SFDYS+SVRV+S   GDQQPRSD+VTTAYLHHIQKGKLI
Sbjct: 21   RIIAQTSVDANVQADFEESGNSFDYSSSVRVTSDVSGDQQPRSDKVTTAYLHHIQKGKLI 80

Query: 81   QPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASA 140
            QPFGCLLALD+KTFKVIAYSENAPE+LTMV+HAVPS+GD+PVLGIG+D++TIFTAPSASA
Sbjct: 81   QPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASA 140

Query: 141  LQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQS 200
            L KALGFGEV+LLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYE P+TAAGALQS
Sbjct: 141  LLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEGPVTAAGALQS 200

Query: 201  YKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSG 260
            YKLAAKAITRLQSLPSGSM RLCDTM+QEVFELTGYDRVMAYKFH+DDHGEV+SE+ K G
Sbjct: 201  YKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVAKPG 260

Query: 261  LEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAP 320
            L+PYLGLHYPATDIPQAARFLFMKNKVRMIVDCRA+H+KVLQDEKL FDLTLCGSTLRAP
Sbjct: 261  LQPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAP 320

Query: 321  HSCHLQYMENMNSIASLVMAVVVN--DEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFP 378
            HSCHLQYMENMNSIASLVMAVVVN  DEE EG     QKRKRLWGLVVCHN++PRFVPFP
Sbjct: 321  HSCHLQYMENMNSIASLVMAVVVNEGDEENEGPALQQQKRKRLWGLVVCHNSSPRFVPFP 380

Query: 379  LRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDL 438
            LRYACEFLAQVFAIHVNKELELE QI+EKNILRTQTLLCDMLMRDAPLGIV++SPNIMDL
Sbjct: 381  LRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDL 440

Query: 439  VKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALALG 498
            VK DGAALLYK KIWRLG+TPNDFQL DI SWLSEYHMDSTGLS DSLYDAGY GA+ALG
Sbjct: 441  VKSDGAALLYKKKIWRLGLTPNDFQLLDIASWLSEYHMDSTGLSTDSLYDAGYPGAIALG 500

Query: 499  DVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEVVK 558
            D VCGMAAVRI+  DMIFWFRS TASE+RWGGAKHE  +KDD RKMHPRSSFKAFLEVVK
Sbjct: 501  DEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQKDDARKMHPRSSFKAFLEVVK 560

Query: 559  TRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEAVTSEM 618
            TRSLPWKDYEMDAIHSLQLILRN FKD    +++ KSI + L DLKIEG +ELE+VTSEM
Sbjct: 561  TRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQTTLGDLKIEGRQELESVTSEM 620

Query: 619  VRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLY 678
            VRLIETATVPILAVD+DGL+NGWNTKIAELTGL VDKAIGKH LTLVEDSS++ V++ML+
Sbjct: 621  VRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVRKMLF 680

Query: 679  LALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVM 738
            LALQGQEEQN+QFEIKTHGS I    I+L+VNACASRDL +NVVGV FVAQDIT QK VM
Sbjct: 681  LALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVFFVAQDITGQKMVM 740

Query: 739  DKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEV 798
            DKFTR+EGDYKAIVQNPNPLIPPIFGSDEFGWC EWNPAM KLTGW REEVIDK+LL EV
Sbjct: 741  DKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDKMLLGEV 800

Query: 799  FGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDRE 858
            FG + +CCRLKNQEAFVNLGIVLN AM GQDPEK  FGF ARNG Y ECLLCVNK LD++
Sbjct: 801  FGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFLARNGMYVECLLCVNKILDKD 860

Query: 859  GAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMME 918
            GAVTG FCFLQL SHELQQAL++QRL EQTALKRL+AL Y KRQI+NPLSGIIFSR+++E
Sbjct: 861  GAVTGFFCFLQLPSHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLE 920

Query: 919  GTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVASISQVM 978
             TELG EQK LL TS  CQ+Q+ K+LD+SD+D IIDG++DLEM EFTL+EVL+ SISQVM
Sbjct: 921  RTELGVEQKELLRTSGLCQKQISKVLDESDIDKIIDGFIDLEMDEFTLHEVLMVSISQVM 980

Query: 979  MKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKD 1038
            +K   KGI+IVNET E+ MSETLYGDS+RLQQVLADFL IS+++ P+GGQL +S+ +TK+
Sbjct: 981  LKIKGKGIQIVNETPEEAMSETLYGDSLRLQQVLADFLLISVSYAPSGGQLTISTDVTKN 1040

Query: 1039 QLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMNGDVQY 1098
            QLG+SVHL +LE RIT+AGGGIPE LL++MFGSE D SEEG SLLISRKLVKLMNGDV+Y
Sbjct: 1041 QLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRY 1100

Query: 1099 LREAGKSTFIVSVELAAAH 1117
            +REAGKS+FI++VELAAAH
Sbjct: 1101 MREAGKSSFIITVELAAAH 1119


>sp|O49934|PHYA_POPTM Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1
          Length = 1125

 Score = 1895 bits (4908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 920/1103 (83%), Positives = 997/1103 (90%), Gaps = 8/1103 (0%)

Query: 20   ARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKL 79
            AR+IAQTT+DAKLHADFE SG+SFDYS+SVRV+ + GGDQ PRSD+VTTAYLHHIQKGKL
Sbjct: 20   ARIIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQPPRSDKVTTAYLHHIQKGKL 79

Query: 80   IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
            IQPFGCLLALDEKTF+V+AYSENAPELLTMV+HAVPSVG+HPVLGIG+DI+TIFTAPSAS
Sbjct: 80   IQPFGCLLALDEKTFRVVAYSENAPELLTMVSHAVPSVGEHPVLGIGTDIRTIFTAPSAS 139

Query: 140  ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
            ALQKA+GFG+VSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ
Sbjct: 140  ALQKAMGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199

Query: 200  SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
            SYKLAAKAITRLQSLPSGSMERLCDTM+QEVFELTGYDR MAYKFH+DDHGEVVSE+TK 
Sbjct: 200  SYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEVTKP 259

Query: 260  GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRA 319
            G+EPYLGLHYPATDIPQA+RFLFMKNKVRMIVDC A+HVKVLQDEKLPFDLTLCGSTLRA
Sbjct: 260  GMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRA 319

Query: 320  PHSCHLQYMENMNSIASLVMAVVVNDEEEEGD---NTLPQKRKRLWGLVVCHNTTPRFVP 376
            PHSCHLQYMENMNSIASLVMAVVVND +E+GD   +  PQKRKRLWGLVVCHNT+PRFVP
Sbjct: 320  PHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSANPQKRKRLWGLVVCHNTSPRFVP 379

Query: 377  FPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPNIM 436
            FPLRYACEFLAQVFAIHVNKELELE QI+EKNILRTQTLLCDMLMRDAPLGIVTQSPNIM
Sbjct: 380  FPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIM 439

Query: 437  DLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALA 496
            DLVKCDGA L Y+NKIWRLG+TP+D QL DI  WLSEYHMDSTGLS DSLYDAGY GALA
Sbjct: 440  DLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPGALA 499

Query: 497  LGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEV 556
            LGDVVCGMAAVRI+ KDM+FWFRSQTA+E+RWGGAKHEP EKDDGR+MHPRSSFKAFLEV
Sbjct: 500  LGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAFLEV 559

Query: 557  VKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEAVTS 616
            VKTRSLPWKDYEMDAIHSLQLILRN FKD+ T+D+DTK+IH++L DLKIEGM+ELEAVTS
Sbjct: 560  VKTRSLPWKDYEMDAIHSLQLILRNTFKDIETMDVDTKTIHARLSDLKIEGMQELEAVTS 619

Query: 617  EMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRM 676
            EMVRLIETATVPILAVDVDGLVNGWNTKI+ELTGL VDKAIGKH LTLVEDSS+D VKRM
Sbjct: 620  EMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLLTLVEDSSVDIVKRM 679

Query: 677  LYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKT 736
            L+LALQG+EEQNIQFEIKTHGSK    PI L+VNACASRDLH+NVVGVCFV QDIT QK 
Sbjct: 680  LFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDITGQKM 739

Query: 737  VMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLA 796
            VMDKFTRIEGDYKAIVQN NPLIPPIFG+DEFGWC EWNPAM  LTGWKREEV+DK+LL 
Sbjct: 740  VMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDKMLLG 799

Query: 797  EVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLD 856
            EVFG NMACCRLKNQEAFVNLG+VLN AM+GQ+ EKV FGFFAR GKY ECLLCV+KKLD
Sbjct: 800  EVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVSKKLD 859

Query: 857  REGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKM 916
            REGAVTGVFCFLQLAS ELQQALHVQRLSEQTALKRLKALAY K+QI NPLSGIIFS KM
Sbjct: 860  REGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLKKQIWNPLSGIIFSGKM 919

Query: 917  MEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVASISQ 976
            MEGTELGAEQK LLHTSAQCQ QL KILDDSDLDSII+GYLDLEMVEFTL E      S 
Sbjct: 920  MEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLEMVEFTLREYYGCYQSS 979

Query: 977  VMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLT 1036
               K + KGI I+N+  +  M+ETLYGDSIRLQQVLADF    +   P+GG L VS+S  
Sbjct: 980  HDEK-HEKGIPIINDALK--MAETLYGDSIRLQQVLADFCRCQLILTPSGGLLTVSASFF 1036

Query: 1037 KDQLGQSVHLAYL--ELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMNG 1094
            +  +G  + +     +LRI H G GIPE L+DQM+G +   S EGISL+ISRKLVKLMNG
Sbjct: 1037 QRPVGAILFILVHSGKLRIRHLGAGIPEALVDQMYGEDTGASVEGISLVISRKLVKLMNG 1096

Query: 1095 DVQYLREAGKSTFIVSVELAAAH 1117
            DV+Y+REAGKS+FI+SVELA  H
Sbjct: 1097 DVRYMREAGKSSFIISVELAGGH 1119


>sp|P42500|PHYA_SOYBN Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1
          Length = 1131

 Score = 1787 bits (4628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 871/1110 (78%), Positives = 970/1110 (87%), Gaps = 19/1110 (1%)

Query: 23   IAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKLIQP 82
            +AQ T+DAK+HA FE SG+SFDYS+SVRVS TA G  QPRSD+VTTAYL    +GK+IQP
Sbjct: 22   MAQATVDAKIHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYL----RGKMIQP 77

Query: 83   FGCLLALDEK----TFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSA 138
            FGCLLA+DEK    T KVIAYSEN PE+LTMV+HAVPSVGDHP LGIG+DIKT+FTAPS 
Sbjct: 78   FGCLLAIDEKNHMQTCKVIAYSENEPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSV 137

Query: 139  SALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGAL 198
            S LQKALG  +VSLLNPILVHCKTSGKPFYAIVHRVTGSLI+DFEPVKPYEVPMTAAGAL
Sbjct: 138  SGLQKALGCADVSLLNPILVHCKTSGKPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGAL 197

Query: 199  QSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITK 258
            QSYKLAAKAITRLQSLPSG+MERLCDTM+QEVFELTGYDRVMAYKFHEDDHGEV+ EITK
Sbjct: 198  QSYKLAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIREITK 257

Query: 259  SGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLR 318
              LEPYLGLHYPATDIPQA+RFLF KNKVRMIVDC A+HV+VLQDEKL FDL LCGSTLR
Sbjct: 258  PCLEPYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLR 317

Query: 319  APHSCHLQYMENMNSIASLVMAVVVNDEEEEGDN--TLPQKRKRLWGLVVCHNTTPRFVP 376
            APHSCH QYM NM+SIASLV+AVVVND EE+GD     PQK +RLWGLVVCHNTTPRFVP
Sbjct: 318  APHSCHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKTERLWGLVVCHNTTPRFVP 377

Query: 377  FPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPNIM 436
            FPLRYA EFL QVFA HV+KE+ELEYQI+EKNIL     L  MLMRDAPLGI ++SPNIM
Sbjct: 378  FPLRYAREFLPQVFADHVHKEIELEYQIIEKNILHHPGHLLCMLMRDAPLGIASESPNIM 437

Query: 437  DLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALA 496
            DLVKCDGAAL+Y+NK+WRLGVTP++ Q+ +I  WLSEYHMDST  S DSL+DAG+  AL+
Sbjct: 438  DLVKCDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTSFSTDSLFDAGFPSALS 497

Query: 497  LGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEV 556
            LGDVVCGMA+VR++ KDM+FWFRS TA+E+RWGGAKHE  EKDD R+MHPRSSFKAFLEV
Sbjct: 498  LGDVVCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEV 557

Query: 557  VKTRSLPWKDYEMDAIHSLQLILRNAFK-DVGTLDLDTKSIHSKLCDLKIEG-------- 607
            VK RSLPWK+YEMDAIHSLQ+ILRNAFK D  +LDL+ K+I+++L DLKIEG        
Sbjct: 558  VKARSLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLRDLKIEGINDLKIER 617

Query: 608  MKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVED 667
            M+ELEAVTSE+VRL  TATVPILAVDVDGLVNGWN KIAELTGL + +A GKH LTLVED
Sbjct: 618  MQELEAVTSEIVRLDYTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLLTLVED 677

Query: 668  SSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFV 727
            SS D VK+ML LAL G+EE+N+QFEIKT GSK++  PI+L+VN CASRDL DNVVGVCFV
Sbjct: 678  SSTDRVKKMLNLALLGEEEKNVQFEIKTLGSKMDSGPISLVVNRCASRDLRDNVVGVCFV 737

Query: 728  AQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKRE 787
            A DIT QK VMDKF RIEGDYKAIVQN NPLIPPIFG+DEFGWCCEWNPAM+KLTGWKRE
Sbjct: 738  AHDITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKRE 797

Query: 788  EVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAEC 847
            EV+DK+LL E+FGT MA CRLKNQEAFVNLG+VLNKAM+G + EKVPFGFFARNGKY EC
Sbjct: 798  EVMDKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVEC 857

Query: 848  LLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPL 907
            LL V+KKLD EG VTGVFCFLQLAS ELQQALH+QRLSEQTA KRL AL+Y KRQIRNPL
Sbjct: 858  LLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALSYMKRQIRNPL 917

Query: 908  SGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLN 967
             GI+FSRKM+EGT+LG EQK+LL TSAQCQ+QL KILDDSDLD+IIDGYLDLEM EFTL+
Sbjct: 918  CGIVFSRKMLEGTDLGTEQKQLLRTSAQCQQQLSKILDDSDLDTIIDGYLDLEMAEFTLH 977

Query: 968  EVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGG 1027
            EVLV S+SQVM KSN K IRIVN+ A  IM ETLYGDS+RLQQVLADFL ISINF PNGG
Sbjct: 978  EVLVTSLSQVMEKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFTPNGG 1037

Query: 1028 QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRK 1087
            Q++V+ SLTK+QLG+SVHL  LEL ITH G G+PE LL+QMFG+ G  SEEGISLLI  K
Sbjct: 1038 QVVVAGSLTKEQLGKSVHLVKLELSITHGGSGVPEVLLNQMFGNNGLESEEGISLLIRAK 1097

Query: 1088 LVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
            L+KLMNGDV+YLREAGKS FI+S ELAAAH
Sbjct: 1098 LLKLMNGDVRYLREAGKSAFILSAELAAAH 1127


>sp|P55141|PHYA_PETCR Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2 SV=1
          Length = 1129

 Score = 1764 bits (4569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 827/1114 (74%), Positives = 962/1114 (86%), Gaps = 10/1114 (0%)

Query: 12   NTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYL 71
            N G++  +ARV+  TT+DAK+HADFE SG SFDYS+SVRV+S  G +   +S+++TTAYL
Sbjct: 12   NPGRANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRVTSAVGENSSIQSNKLTTAYL 70

Query: 72   HHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKT 131
            HHIQKGKLIQP GCLLA+DEK+FK++AYSENAPE+LTMV+HAVPSVG+HPVLGIG+D++T
Sbjct: 71   HHIQKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRT 130

Query: 132  IFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVP 191
            IFTAPSA+ALQKA+GF +++LLNPILVHCKTSGKPFYAI HRVTGSLIIDFEPVKPYEVP
Sbjct: 131  IFTAPSAAALQKAVGFTDINLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEVP 190

Query: 192  MTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGE 251
            MTAAGALQSYKLA+KA+ RLQ+LP GSMERLCDTM+QEVFELTGYDRVMAYKFH+DDHGE
Sbjct: 191  MTAAGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGE 250

Query: 252  VVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLT 311
            V +E+TK GLEPY GLHYPATD+PQAARFLF+KNKVRMI DCRA    VLQDEKLPF+LT
Sbjct: 251  VTAEVTKPGLEPYFGLHYPATDVPQAARFLFLKNKVRMICDCRANSAPVLQDEKLPFELT 310

Query: 312  LCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEE--EGDNTLPQKRKRLWGLVVCHN 369
            LCGSTLRAPHSCHLQYMENMNSIASLVMAVV+ND +E  E  +    K K+LWGLVVCHN
Sbjct: 311  LCGSTLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHN 370

Query: 370  TTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIV 429
            T+PRFVPFPLRYACEFLAQVFAIHV+KELELE QI+EKNILRTQTLLCD+LMRDAPLGIV
Sbjct: 371  TSPRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIV 430

Query: 430  TQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDA 489
            +QSPN+MDLVKCDGAALLYKNK++RLG TP+D+QL DIVSWL+EYH DSTGLS DSLYDA
Sbjct: 431  SQSPNMMDLVKCDGAALLYKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDA 490

Query: 490  GYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSS 549
            GY GALALGDVVCGMA V+I+  DM+FWFRS  A  +RWGGAK EPDE  DGRKMHPRSS
Sbjct: 491  GYPGALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKAEPDENHDGRKMHPRSS 550

Query: 550  FKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAF---KDVGT----LDLDTKSIHSKLCD 602
            FKAFLEVVKTRS  WK++EMDAIHSLQLILR A    K V      +  +T  IH+KL D
Sbjct: 551  FKAFLEVVKTRSTTWKEFEMDAIHSLQLILRKALSVEKAVAAQGDEIRSNTDVIHTKLND 610

Query: 603  LKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFL 662
            LKIEG++ELEAVTSEMVRLIETATVPI AVD D +VNGWNTKIAELTGL VD+A+GKH L
Sbjct: 611  LKIEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLL 670

Query: 663  TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVV 722
            TLVEDSS+ TV  +L LALQG+EEQ I FE KT+GS+ +  PIT++VNACA+R LHDNVV
Sbjct: 671  TLVEDSSVGTVVFLLALALQGKEEQGIPFEFKTYGSREDSVPITVVVNACATRGLHDNVV 730

Query: 723  GVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLT 782
            GVCFVAQD+T QKT+MDKFTRI+GDYKAIVQNPNPLIPPIFG+DEFGWC EWN AM +L+
Sbjct: 731  GVCFVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELS 790

Query: 783  GWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNG 842
            GW+RE+V++K+LL E+FG   +CC LK++EAFVNLG+VLN A++GQ  EK+ F FFA +G
Sbjct: 791  GWRREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQISEKICFSFFATDG 850

Query: 843  KYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQ 902
            KY ECLLC +KKL  EG VTG+FCFLQLAS ELQQALH+QRL+EQTA+KRLK L+Y +RQ
Sbjct: 851  KYVECLLCASKKLHGEGTVTGIFCFLQLASQELQQALHIQRLTEQTAMKRLKTLSYLRRQ 910

Query: 903  IRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMV 962
             +NPL GI F R+ +E   +G EQ +L  TS  CQR ++KILDD+DLDSIIDGYLDLEM 
Sbjct: 911  AKNPLCGINFVREKLEEIGMGEEQTKLFRTSVHCQRHVNKILDDTDLDSIIDGYLDLEMS 970

Query: 963  EFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINF 1022
            EF L++V VAS SQV M+SN K I++V+  +E++MSETLYGDS+RLQ+VLADF+S+ +N 
Sbjct: 971  EFRLHDVYVASRSQVSMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQKVLADFMSVCVNL 1030

Query: 1023 VPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISL 1082
             P GG L +S +LT+D LGQSV L +LE RITH G G+PE  + QMFGS+ +TSEEGISL
Sbjct: 1031 TPVGGHLGISVTLTEDNLGQSVQLVHLEFRITHTGAGVPEEAVSQMFGSDSETSEEGISL 1090

Query: 1083 LISRKLVKLMNGDVQYLREAGKSTFIVSVELAAA 1116
            LISRKLVKLMNGDV YLREAGKSTFI++VELAAA
Sbjct: 1091 LISRKLVKLMNGDVHYLREAGKSTFIITVELAAA 1124


>sp|Q10DU0|PHYA_ORYSJ Phytochrome A OS=Oryza sativa subsp. japonica GN=PHYA PE=2 SV=1
          Length = 1128

 Score = 1539 bits (3984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1132 (65%), Positives = 920/1132 (81%), Gaps = 23/1132 (2%)

Query: 1    MSSSRPAQ--SSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGD 58
            MSSSRP Q  SSS+  +    AR++AQTT+DA+L+A++E  G SFDYS  V    T G +
Sbjct: 1    MSSSRPTQCSSSSSRTRQSSRARILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPE 60

Query: 59   QQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVG 118
            QQ RS++V  AYLHHIQ+ KLIQPFGCLLALDEKTF VIA SENAPE+LT V+HAVPSV 
Sbjct: 61   QQARSEKVI-AYLHHIQRAKLIQPFGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVD 119

Query: 119  DHPVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSL 178
            D P L IG+++ ++FT P A+ALQKALGF +VSLLNPILV CKTSGKPFYAIVHR TG L
Sbjct: 120  DPPKLRIGTNVWSLFTDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCL 179

Query: 179  IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDR 238
            ++DFEPVKP E P TAAGALQSYKLAAKAI+++QSLP GSME LC+T+++E+F+LTGYDR
Sbjct: 180  VVDFEPVKPTEFPATAAGALQSYKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDR 239

Query: 239  VMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHV 298
            VMAYKFHEDDHGEV +EITK GLEPYLGLHYPATDIPQAARFLFMKNKVRMI DCRAR +
Sbjct: 240  VMAYKFHEDDHGEVFAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSI 299

Query: 299  KVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGD-----NT 353
            K+++DE L  D++LCGSTLRAPHSCHLQYMENMNSIASLVMAVVVN+ E++ +       
Sbjct: 300  KIIEDESLHLDISLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPA 359

Query: 354  LPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQ 413
              QKRK+LWGL+VCH+ +PR+VPFPLRYACEFLAQVFA+HVNKE ELE Q+ EK+ILR Q
Sbjct: 360  QQQKRKKLWGLLVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQ 419

Query: 414  TLLCDMLMRDA-PLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLS 472
            T+L DML+R++ PL IV+ +PNIMDLVKCDGAALLY  K+WRL   P + Q+ DI  WLS
Sbjct: 420  TMLSDMLLRESSPLSIVSGTPNIMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLS 479

Query: 473  EYHMDSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAK 532
            + H DSTGLS DSL+DAGY GA ALGD++CGMA  +I+ KD++FWFRS TA+E+RWGGAK
Sbjct: 480  DVHRDSTGLSTDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAK 539

Query: 533  HEPDEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLD 592
            H+P +KDD R+MHPR SFKAFLEVVK +SLPW DYEMDAIHSLQLILR      GTL+ D
Sbjct: 540  HDPSDKDDSRRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILR------GTLNDD 593

Query: 593  TK-----SIHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAE 647
             K     S+ +++ DLK++G+ EL+AVTSEMVRL+ETATVPILAVD +GLVNGWN K+AE
Sbjct: 594  IKPTRAASLDNQVGDLKLDGLAELQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAE 653

Query: 648  LTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITL 707
            LTGL VD+AIG+H LT+VE+SS+  V+RMLYLALQG+EE+ ++FE+KTHGSK +D P+ L
Sbjct: 654  LTGLRVDEAIGRHILTVVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVIL 713

Query: 708  IVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDE 767
            +VNACASRDLHD+VVGVCFVAQD+T  K VMDKFTR+EGDYKAI+ NP+PLIPPIFG+DE
Sbjct: 714  VVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADE 773

Query: 768  FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG 827
            FGWC EWN AM KLTGW R+EVI+K+LL EVF +  A C +KN++AFV+L I++N A++G
Sbjct: 774  FGWCSEWNAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAG 833

Query: 828  QDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQ 887
             + EK PF FF RNGKY ECLL VN+K++ +G +TGVFCF+Q+ SHELQ ALHVQ+ S+Q
Sbjct: 834  DETEKAPFSFFDRNGKYIECLLSVNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQ 893

Query: 888  TALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDS 947
             AL +LKA +Y +  I NPLSG+++SRK ++ T L  EQ + ++ +  C RQL+KIL D 
Sbjct: 894  NALTKLKAYSYMRHAINNPLSGMLYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDL 953

Query: 948  DLDSIID--GYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDS 1005
            D DS+++    LDLEMVEF L +V VA++SQV++    KGIR+     E+ M +T+YGD 
Sbjct: 954  DQDSVMNKSSCLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDG 1013

Query: 1006 IRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLL 1065
            +RLQQ+L+DFL +S+ F P GG + +S SLTK+ +G+++HL  LELRI H G G+P  LL
Sbjct: 1014 VRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLL 1073

Query: 1066 DQMFGSEG-DTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAA 1116
             QM+  +  + S+EG+SL +SR L++LMNGDV+++REAG STFI+SVELA+A
Sbjct: 1074 SQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA 1125


>sp|A2XLG5|PHYA_ORYSI Phytochrome A OS=Oryza sativa subsp. indica GN=PHYA PE=2 SV=2
          Length = 1128

 Score = 1539 bits (3984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1132 (65%), Positives = 920/1132 (81%), Gaps = 23/1132 (2%)

Query: 1    MSSSRPAQ--SSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGD 58
            MSSSRP Q  SSS+  +    AR++AQTT+DA+L+A++E  G SFDYS  V    T G +
Sbjct: 1    MSSSRPTQCSSSSSRTRQSSRARILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPE 60

Query: 59   QQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVG 118
            QQ RS++V  AYLHHIQ+ KLIQPFGCLLALDEKTF VIA SENAPE+LT V+HAVPSV 
Sbjct: 61   QQARSEKVI-AYLHHIQRAKLIQPFGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVD 119

Query: 119  DHPVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSL 178
            D P L IG+++ ++FT P A+ALQKALGF +VSLLNPILV CKTSGKPFYAIVHR TG L
Sbjct: 120  DPPKLRIGTNVWSLFTDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCL 179

Query: 179  IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDR 238
            ++DFEPVKP E P TAAGALQSYKLAAKAI+++QSLP GSME LC+T+++E+F+LTGYDR
Sbjct: 180  VVDFEPVKPTEFPATAAGALQSYKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDR 239

Query: 239  VMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHV 298
            VMAYKFHEDDHGEV +EITK GLEPYLGLHYPATDIPQAARFLFMKNKVRMI DCRAR +
Sbjct: 240  VMAYKFHEDDHGEVFAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSI 299

Query: 299  KVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGD-----NT 353
            K+++DE L  D++LCGSTLRAPHSCHLQYMENMNSIASLVMAVVVN+ E++ +       
Sbjct: 300  KIIEDESLHLDISLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPA 359

Query: 354  LPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQ 413
              QKRK+LWGL+VCH+ +PR+VPFPLRYACEFLAQVFA+HVNKE ELE Q+ EK+ILR Q
Sbjct: 360  QQQKRKKLWGLLVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQ 419

Query: 414  TLLCDMLMRDA-PLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLS 472
            T+L DML+R++ PL IV+ +PNIMDLVKCDGAALLY  K+WRL   P + Q+ DI  WLS
Sbjct: 420  TMLSDMLLRESSPLSIVSGTPNIMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLS 479

Query: 473  EYHMDSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAK 532
            + H DSTGLS DSL+DAGY GA ALGD++CGMA  +I+ KD++FWFRS TA+E+RWGGAK
Sbjct: 480  DVHRDSTGLSTDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAK 539

Query: 533  HEPDEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLD 592
            H+P +KDD R+MHPR SFKAFLEVVK +SLPW DYEMDAIHSLQLILR      GTL+ D
Sbjct: 540  HDPSDKDDSRRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILR------GTLNDD 593

Query: 593  TK-----SIHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAE 647
             K     S+ +++ DLK++G+ EL+AVTSEMVRL+ETATVPILAVD +GLVNGWN K+AE
Sbjct: 594  IKPTRAASLDNQVGDLKLDGLAELQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAE 653

Query: 648  LTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITL 707
            LTGL VD+AIG+H LT+VE+SS+  V+RMLYLALQG+EE+ ++FE+KTHGSK +D P+ L
Sbjct: 654  LTGLRVDEAIGRHILTVVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVIL 713

Query: 708  IVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDE 767
            +VNACASRDLHD+VVGVCFVAQD+T  K VMDKFTR+EGDYKAI+ NP+PLIPPIFG+DE
Sbjct: 714  VVNACASRDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADE 773

Query: 768  FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG 827
            FGWC EWN AM KLTGW R+EVI+K+LL EVF +  A C +KN++AFV+L I++N A++G
Sbjct: 774  FGWCSEWNAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAG 833

Query: 828  QDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQ 887
             + EK PF FF RNGKY ECLL VN+K++ +G +TGVFCF+Q+ SHELQ ALHVQ+ S+Q
Sbjct: 834  DETEKAPFSFFDRNGKYIECLLSVNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQ 893

Query: 888  TALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDS 947
             AL +LKA +Y +  I NPLSG+++SRK ++ T L  EQ + ++ +  C RQL+KIL D 
Sbjct: 894  NALTKLKAYSYMRHAINNPLSGMLYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDL 953

Query: 948  DLDSIID--GYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDS 1005
            D DS+++    LDLEMVEF L +V VA++SQV++    KGIR+     E+ M +T+YGD 
Sbjct: 954  DQDSVMNKSSCLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDG 1013

Query: 1006 IRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLL 1065
            +RLQQ+L+DFL +S+ F P GG + +S SLTK+ +G+++HL  LELRI H G G+P  LL
Sbjct: 1014 VRLQQILSDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLL 1073

Query: 1066 DQMFGSEG-DTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAA 1116
             QM+  +  + S+EG+SL +SR L++LMNGDV+++REAG STFI+SVELA+A
Sbjct: 1074 SQMYEDDNKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASA 1125


>sp|P93526|PHYA_SORBI Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2 SV=1
          Length = 1131

 Score = 1534 bits (3971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1106 (64%), Positives = 897/1106 (81%), Gaps = 11/1106 (0%)

Query: 20   ARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKL 79
            AR++AQTT+DA+L+A++E SG SFDYS  V    +   +QQ RS +V  AYL HIQ+GKL
Sbjct: 22   ARILAQTTLDAELNAEYEESGDSFDYSKLVEAQRSTPSEQQGRSGKVI-AYLQHIQRGKL 80

Query: 80   IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
            IQPFGCLLALDEK+F+VIA+SENAPE+LT V+HAVP+V D P LGIG++++++FT P A+
Sbjct: 81   IQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLGIGTNVRSLFTDPGAT 140

Query: 140  ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
            ALQKALGF +VSLLNPILV CKTSGKPFYAIVHR TG L++DFEPVKP E P TAAGALQ
Sbjct: 141  ALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQ 200

Query: 200  SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
            SYKLAAKAI+++QSLP GSME LC+T+++EVFELTGYDRVMAYKFHED+HGEV +EITK 
Sbjct: 201  SYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAEITKP 260

Query: 260  GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRA 319
            G+EPYLGLHYPATDIPQAARFLFMKNKVRMI DCRA+ VK+++DE L  D++LCGSTLRA
Sbjct: 261  GIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGSTLRA 320

Query: 320  PHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRK-----RLWGLVVCHNTTPRF 374
            PHSCHLQYMENMNSIASLVMAVVVN+ EE+ +    Q  +     RLWGL+VCH+ +PR+
Sbjct: 321  PHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHESPRY 380

Query: 375  VPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA-PLGIVTQSP 433
            VPFPLRYACEFLAQVFA+HVNKE ELE QI EK+ILR QT+L DML ++A PL IV+ SP
Sbjct: 381  VPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIVSGSP 440

Query: 434  NIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLG 493
            NIMDLVKCDGAALLY +K+WRL   P + Q+ DI  WLSE H DSTGLS DSL DAGY G
Sbjct: 441  NIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAGYPG 500

Query: 494  ALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAF 553
            A +LGD++CGMA  +I+ KD++FWFRS TA+E++WGGAKH+P +KDD R+MHPR SFKAF
Sbjct: 501  AASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLSFKAF 560

Query: 554  LEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEA 613
            LEVVK +SLPW DYEMDAIHSLQLILR    D     +    + +++ DLK++G+ EL+A
Sbjct: 561  LEVVKMKSLPWSDYEMDAIHSLQLILRGTLND-ALKPVQASGLDNQIGDLKLDGLAELQA 619

Query: 614  VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTV 673
            VTSEMVRL+ETATVPILAVD +GLVNGWN K+AEL+GL VD+AIG+H LTLVEDSS+  V
Sbjct: 620  VTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILTLVEDSSVSIV 679

Query: 674  KRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITP 733
            +RMLYLALQG+EE+ ++FE+KTHGSK +D P+ L+VNACASRDLHD+VVGVCFVAQD+T 
Sbjct: 680  QRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTV 739

Query: 734  QKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKL 793
             K VMDKFTR+EGDYKAI+ NPNPLIPPIFG+D+FGWC EWN AM KLTGW R+EVIDK+
Sbjct: 740  HKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRDEVIDKM 799

Query: 794  LLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNK 853
            LL EVF ++ A C LK+++ FV L I++N A++G++ E  PFG F RNGKY ECLL VN+
Sbjct: 800  LLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAENAPFGLFDRNGKYIECLLSVNR 859

Query: 854  KLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFS 913
            K++ +G VTGVFCF+ + S +LQ ALHVQ+ SEQTA +RLKA +Y +  I  PLSG+++S
Sbjct: 860  KVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPLSGMLYS 919

Query: 914  RKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIID--GYLDLEMVEFTLNEVLV 971
            R+ ++ T L  EQ R +H +  C RQL+KIL D D D+I D    LDL+M EF L +V+V
Sbjct: 920  RETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFVLEDVVV 979

Query: 972  ASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMV 1031
            +++SQV++    KGIR+     E+ M + +YGD IRLQQ+L+DFL +S+ F P GG + +
Sbjct: 980  SAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPVGGSVDI 1039

Query: 1032 SSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG-DTSEEGISLLISRKLVK 1090
            SS LTK+ +G+++HL   ELRI H G G+P  +L QM+  +  + SEEG+SLL+SR L++
Sbjct: 1040 SSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLLVSRNLLR 1099

Query: 1091 LMNGDVQYLREAGKSTFIVSVELAAA 1116
            LMNG+++++REAG STFI++ ELAAA
Sbjct: 1100 LMNGNIRHIREAGMSTFILTAELAAA 1125


>sp|P06593|PHYA3_AVESA Phytochrome A type 3 OS=Avena sativa GN=PHYA3 PE=1 SV=3
          Length = 1129

 Score = 1524 bits (3947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/1106 (65%), Positives = 896/1106 (81%), Gaps = 11/1106 (0%)

Query: 20   ARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKL 79
            ARV+AQTT+DA+L+A++E SG SFDYS  V         QQ RS++V  AYL HIQKGKL
Sbjct: 20   ARVLAQTTLDAELNAEYEESGDSFDYSKLVEAQRDGPPVQQGRSEKVI-AYLQHIQKGKL 78

Query: 80   IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
            IQ FGCLLALDEK+F VIA+SENAPE+LT V+HAVPSV D P LGIG++++++F+   A+
Sbjct: 79   IQTFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGAT 138

Query: 140  ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
            AL KALGF +VSLLNPILV CKTSGKPFYAIVHR TG L++DFEPVKP E P TAAGALQ
Sbjct: 139  ALHKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQ 198

Query: 200  SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
            SYKLAAKAI+++QSLP GSME LC+T+++EVF+LTGYDRVMAYKFHEDDHGEV SEITK 
Sbjct: 199  SYKLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFSEITKP 258

Query: 260  GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRA 319
            GLEPYLGLHYPATDIPQAAR LFMKNKVRMI DCRAR +KV++ E LPFD++LCGS LRA
Sbjct: 259  GLEPYLGLHYPATDIPQAARLLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSALRA 318

Query: 320  PHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQ-----KRKRLWGLVVCHNTTPRF 374
            PHSCHLQYMENMNSIASLVMAVVVN+ EE+ +    Q     K+K+LWGL+VCH+ +PR+
Sbjct: 319  PHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQKKKKLWGLLVCHHESPRY 378

Query: 375  VPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA-PLGIVTQSP 433
            VPFPLRYACEFLAQVFA+HVN+E ELE Q+ EKNIL+ QT+L DML R+A PL IV+ +P
Sbjct: 379  VPFPLRYACEFLAQVFAVHVNREFELEKQLREKNILKMQTMLSDMLFREASPLTIVSGTP 438

Query: 434  NIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLG 493
            NIMDLVKCDGAALLY  K+WRL   P + Q+HDI  WLS+ H DSTGLS DSL+DAGY G
Sbjct: 439  NIMDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGYPG 498

Query: 494  ALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAF 553
            A ALGD++CGMA  +I+ KD++FWFRS TA+E+RWGGAK++P + DD R+MHPR SFKAF
Sbjct: 499  AAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKNDPSDMDDSRRMHPRLSFKAF 558

Query: 554  LEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEA 613
            LEVVK +SLPW DYEMDAIHSLQLILR    D      +  S+ +++ DLK++G+ EL+A
Sbjct: 559  LEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDASKPKREA-SLDNQIGDLKLDGLAELQA 617

Query: 614  VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTV 673
            VTSEMVRL+ETATVPILAVD +GLVNGWN K AELTGL VD AIG+H LTLVEDSS+  V
Sbjct: 618  VTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILTLVEDSSVPVV 677

Query: 674  KRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITP 733
            +RMLYLALQG+EE+ ++FE+KTHG K +D P+ L+VNACASRDLHD+VVGVCFVAQD+T 
Sbjct: 678  QRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTV 737

Query: 734  QKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKL 793
             K VMDKFTR+EGDYKAI+ NPNPLIPPIFG+DEFGWC EWN AM KLTGW R+EV+DK+
Sbjct: 738  HKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVLDKM 797

Query: 794  LLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNK 853
            LL EVF ++ A C LKN++AFV+L +++N A++G++ EK PFGFF R+GKY ECLL  N+
Sbjct: 798  LLGEVFDSSNASCPLKNRDAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLSANR 857

Query: 854  KLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFS 913
            K +  G +TGVFCF+ +ASHELQ AL VQ+ SEQT+LKRLKA +Y +  I NPLSG+++S
Sbjct: 858  KENEGGLITGVFCFIHVASHELQHALQVQQASEQTSLKRLKAFSYMRHAINNPLSGMLYS 917

Query: 914  RKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIID--GYLDLEMVEFTLNEVLV 971
            RK ++ T+L  EQ + +H    C  Q++KIL D D DSI +    LDLEM EF L +V+V
Sbjct: 918  RKALKNTDLNEEQMKQIHVGDNCHHQINKILADLDQDSITEKSSCLDLEMAEFLLQDVVV 977

Query: 972  ASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMV 1031
            A++SQV++    KGIRI     E+ M +++YGD +RLQQ+L+DFL IS+ F P GG + +
Sbjct: 978  AAVSQVLITCQGKGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFSPVGGSVEI 1037

Query: 1032 SSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG-DTSEEGISLLISRKLVK 1090
            SS LTK+ +G+++HL  LELRI H G G+P  L+ QMF  +  + SEEG+SLL+SR L++
Sbjct: 1038 SSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDNKEQSEEGLSLLVSRNLLR 1097

Query: 1091 LMNGDVQYLREAGKSTFIVSVELAAA 1116
            LMNGDV++LREAG STFI++ ELA+A
Sbjct: 1098 LMNGDVRHLREAGVSTFIITAELASA 1123


>sp|P19862|PHYA1_MAIZE Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1
          Length = 1131

 Score = 1523 bits (3944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/1104 (64%), Positives = 896/1104 (81%), Gaps = 11/1104 (0%)

Query: 22   VIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKLIQ 81
            ++AQTT+DA+L+A++E SG SFDYS  V    +   +QQ RS +V  AYL HIQ+GKLIQ
Sbjct: 24   ILAQTTLDAELNAEYEESGDSFDYSKLVEAQRSTPPEQQGRSGKVI-AYLQHIQRGKLIQ 82

Query: 82   PFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASAL 141
            PFGCLLALDEK+F+VIA+SENAPE+LT V+HAVP+V D P LGIG++++++FT P A+AL
Sbjct: 83   PFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLGIGTNVRSLFTDPGATAL 142

Query: 142  QKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201
            QKALGF +VSLLNPILV CKTSGKPFYAIVHR TG L++DFEPVKP E P TAAGALQSY
Sbjct: 143  QKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSY 202

Query: 202  KLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGL 261
            KLAAKAI+++QSLP GSME LC+T+++EVF+LTGYDRVMAYKFHED+HGEV +EITK G+
Sbjct: 203  KLAAKAISKIQSLPGGSMEALCNTVVKEVFDLTGYDRVMAYKFHEDEHGEVFAEITKPGI 262

Query: 262  EPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPH 321
            EPY+GLHYPATDIPQAARFLFMKNKVRMI DCRAR VK+++DE L  D++LCGSTLRAPH
Sbjct: 263  EPYIGLHYPATDIPQAARFLFMKNKVRMICDCRARSVKIIEDEALSIDISLCGSTLRAPH 322

Query: 322  SCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQ-----KRKRLWGLVVCHNTTPRFVP 376
            SCHL+YMENMNSIASLVMAVVVN+ EE+ +    Q     K+KRLWGL+VCH+ +PR+VP
Sbjct: 323  SCHLKYMENMNSIASLVMAVVVNENEEDDEPEPEQPPQQQKKKRLWGLIVCHHESPRYVP 382

Query: 377  FPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA-PLGIVTQSPNI 435
            FPLRYACEFLAQVFA+HVNKE ELE QI EKNILR QT+L DML +++ PL IV+ SPNI
Sbjct: 383  FPLRYACEFLAQVFAVHVNKEFELEKQIREKNILRMQTMLSDMLFKESSPLSIVSGSPNI 442

Query: 436  MDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGAL 495
            MDLVKCDGAALLY +K+WRL   P + Q+ DI  WLSE H DSTGLS DSL DAGY GA 
Sbjct: 443  MDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAGYPGAA 502

Query: 496  ALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLE 555
            +LGD++CGMA  +I+ KD++FWFRS TA+E++WGGAKH+P +KDD R+MHPR SFKAFLE
Sbjct: 503  SLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLSFKAFLE 562

Query: 556  VVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEAVT 615
            VVKT+SLPW DYEMDAIHSLQLILR    D  +       + +++ DLK++G+ EL+AVT
Sbjct: 563  VVKTKSLPWSDYEMDAIHSLQLILRGTLND-ASKPAQASGLDNQIGDLKLDGLAELQAVT 621

Query: 616  SEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKR 675
            SEMVRL+ETATVPILAVD +GLVNGWN K+AEL+GL VD+AIG+H LTLVEDSS+  V+R
Sbjct: 622  SEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILTLVEDSSVSLVQR 681

Query: 676  MLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQK 735
            MLYLALQG+EE+ ++FE+KTHGSK +D P+ L+VNACASRDLHD+VVGVCFVAQD+T  K
Sbjct: 682  MLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHK 741

Query: 736  TVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLL 795
             VMDKFTR+EGDYKAI+ NPNPLIPPIFG+D+FGWC EWN AM KLTGW R+EV+DK+LL
Sbjct: 742  LVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNAAMTKLTGWHRDEVVDKMLL 801

Query: 796  AEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKL 855
             EVF ++ A C LK+++AFV L IV+N A++G++ EK  FGFF RN KY ECLL VN+K+
Sbjct: 802  GEVFNSSNASCLLKSKDAFVRLCIVINSALAGEEAEKASFGFFDRNEKYVECLLSVNRKV 861

Query: 856  DREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRK 915
            + +G VTGVFCF+ + S +LQ ALHVQ+ SEQTA ++LKA +Y +  I  PLSG+++SR+
Sbjct: 862  NADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRKLKAFSYMRHAINKPLSGMLYSRE 921

Query: 916  MMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIID--GYLDLEMVEFTLNEVLVAS 973
             ++ T L  EQ R +     C RQL+KIL D D D+I D    LDL+M EF L +V+V++
Sbjct: 922  TLKSTGLNEEQMRQVRVGDNCHRQLNKILADLDQDNITDKSSCLDLDMAEFVLQDVVVSA 981

Query: 974  ISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSS 1033
            +SQV++   AKGIR+     E+ M + +YGD IRLQQ+++DFL +S+ F P GG + +SS
Sbjct: 982  VSQVLIGCQAKGIRVACNLPERSMKQKVYGDGIRLQQIVSDFLFVSVKFSPAGGSVDISS 1041

Query: 1034 SLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG-DTSEEGISLLISRKLVKLM 1092
             LTK+ +G+++HL   ELRI H G G+P  +L QM+  +  + SEEG SL +SR L++LM
Sbjct: 1042 KLTKNSIGENLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSLAVSRNLLRLM 1101

Query: 1093 NGDVQYLREAGKSTFIVSVELAAA 1116
            NGD+++LREAG STFI++ ELAAA
Sbjct: 1102 NGDIRHLREAGMSTFILTAELAAA 1125


>sp|P06594|PHYA4_AVESA Phytochrome A type 4 OS=Avena sativa GN=PHYA4 PE=1 SV=3
          Length = 1129

 Score = 1512 bits (3914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/1104 (65%), Positives = 893/1104 (80%), Gaps = 11/1104 (0%)

Query: 22   VIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKLIQ 81
            V+AQTT+DA+L+A++E SG SFDYS  V         QQ RS++V  AYL HIQKGKLIQ
Sbjct: 22   VLAQTTLDAELNAEYEESGDSFDYSKLVEAQRDGPPVQQGRSEKVI-AYLQHIQKGKLIQ 80

Query: 82   PFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASAL 141
             FGC+LALDEK+F VIA+SENAPE+LT V+HAVPSV D P LGIG++++++F+   A+AL
Sbjct: 81   TFGCMLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGATAL 140

Query: 142  QKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201
             KALGF +VSLLNPILV CKTSGKPFYAIVHR TG L++DFEPVKP E P TAAGALQSY
Sbjct: 141  HKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSY 200

Query: 202  KLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGL 261
            KLAAKAI+++QSLP GSME LC+T+++EVF+LTGYDRVMAYKFHEDDHGEV +EITK GL
Sbjct: 201  KLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFAEITKPGL 260

Query: 262  EPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPH 321
            EPYLGLHYPATDIPQAARFLFMKNKVRMI DCRAR +KV++ E LPFD++LCGS LRAPH
Sbjct: 261  EPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSALRAPH 320

Query: 322  SCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQ-----KRKRLWGLVVCHNTTPRFVP 376
            SCHLQYMENMNSIASLVMAVVVN+ EE+ +    Q     ++K+LWGL+VCH+ +PR+VP
Sbjct: 321  SCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQQKKKLWGLLVCHHESPRYVP 380

Query: 377  FPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA-PLGIVTQSPNI 435
            FPLRYACEFLAQVFA+HVN+E ELE Q+ EK+IL+ QT+L DML R+A PL IV+ +PNI
Sbjct: 381  FPLRYACEFLAQVFAVHVNREFELEKQLREKSILKMQTMLSDMLFREASPLTIVSGAPNI 440

Query: 436  MDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGAL 495
            MDLVKCDGAALLY  K+WRL   P + Q+HDI  WLS+ H DSTGLS DSL+DAGY GA 
Sbjct: 441  MDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGYPGAS 500

Query: 496  ALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLE 555
            ALGD++CGMA  +I+ KD+IFWFRS TA+E+RWGGAKH+  + DD R+MHPR SFKAFLE
Sbjct: 501  ALGDMICGMAVAKINSKDIIFWFRSHTAAEIRWGGAKHDSSDMDDSRRMHPRLSFKAFLE 560

Query: 556  VVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEAVT 615
            VVK +SLPW DYEMDAIHSLQLILR    D      +  S+ +++ DLK++G+ EL+AVT
Sbjct: 561  VVKMKSLPWTDYEMDAIHSLQLILRGTLNDASKPKREA-SLDNQIGDLKLDGLAELQAVT 619

Query: 616  SEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKR 675
            SEMVRL+ETATVPILAVD +GLVNGWN K AELTGL VD AIG+H LTLVE+SS+  V+R
Sbjct: 620  SEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILTLVEESSVPVVQR 679

Query: 676  MLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQK 735
            MLYLALQG+EE+ ++FE+KTHG + +D P+ L+VNACASRDLHD+VVGVCFVAQD+T  K
Sbjct: 680  MLYLALQGKEEKEVRFEVKTHGPRRDDGPVILVVNACASRDLHDHVVGVCFVAQDMTVHK 739

Query: 736  TVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLL 795
             VMDKFTR+EGDYKAI+ NPNPLIPPIFG+DEFGWC EWN AM KLTGW R+EV+DK+LL
Sbjct: 740  LVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVLDKMLL 799

Query: 796  AEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKL 855
             EVF ++ A C LKN+ AFV+L +++N A++G++ EK PFGFF R+GKY ECLL  N+K 
Sbjct: 800  GEVFDSSNASCPLKNKNAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLSANRKE 859

Query: 856  DREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRK 915
            +  G +TGVFCF+ +ASHELQ AL VQ+ SEQT+LKRLKA +Y +  I NPLSG+++SRK
Sbjct: 860  NEGGLITGVFCFIHVASHELQHALQVQQASEQTSLKRLKAFSYMRHAINNPLSGMLYSRK 919

Query: 916  MMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIID--GYLDLEMVEFTLNEVLVAS 973
             ++ T+L  EQ + +H    C  Q++KIL D D DSI +    LDLEM EF   +V+VA+
Sbjct: 920  ALKNTDLNEEQMKQIHVGDNCHHQINKILADLDQDSISEKSSCLDLEMAEFVFQDVVVAA 979

Query: 974  ISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSS 1033
            +SQV++    KGIRI     E+ M +++YGD +RLQQ+L+DFL IS+ F P GG + +SS
Sbjct: 980  VSQVLITCQGKGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFSPVGGSVEISS 1039

Query: 1034 SLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG-DTSEEGISLLISRKLVKLM 1092
             LTK+ +G+++HL  LELRI H G G+P  L++QMF  +  + S+EG+ LL+SRKL++LM
Sbjct: 1040 KLTKNSIGENLHLIDLELRIKHQGLGVPAELMEQMFEEDNKEQSDEGLGLLVSRKLLRLM 1099

Query: 1093 NGDVQYLREAGKSTFIVSVELAAA 1116
            NGDV++LREAG STFI++ ELA+A
Sbjct: 1100 NGDVRHLREAGVSTFILTAELASA 1123


>sp|Q40762|PHY_PICAB Phytochrome OS=Picea abies PE=2 SV=1
          Length = 1136

 Score = 1397 bits (3616), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1138 (60%), Positives = 870/1138 (76%), Gaps = 27/1138 (2%)

Query: 1    MSSSRPAQSS------SNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSST 54
            MS++RP  ++      S +  S+HSARVI QT +DAKL A+FE S  SFDY+ S+ +S  
Sbjct: 1    MSTTRPRAATHSASSGSVSRSSKHSARVITQTPVDAKLQAEFEGSVHSFDYTKSIDISGD 60

Query: 55   AGGDQQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVN--H 112
            +             AYL  +QK  LIQPFGC+LA++E +  V+ YSENAPE+L +V   H
Sbjct: 61   S----SSVPSETVKAYLQRLQKEMLIQPFGCVLAVEEGSCAVVGYSENAPEMLDVVGGAH 116

Query: 113  AVPSVGDHP---------VLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTS 163
            AVPS+G            +L IG D +T+F   SA+ALQKA  F ++ L+NPI V C  S
Sbjct: 117  AVPSIGGQQQEGGGGGGGLLRIGMDARTLFKPASAAALQKAATFADMHLVNPIFVRCNRS 176

Query: 164  GKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLC 223
            GKPFYAI++R+   L+IDFEPV P +VP++AAGALQSYKLAAKAI+RLQSLP G +  LC
Sbjct: 177  GKPFYAILNRIDAGLVIDFEPVMPSDVPVSAAGALQSYKLAAKAISRLQSLPGGDIRLLC 236

Query: 224  DTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFM 283
            DT++QEV ELTGYDRVMAY+FHED+HGEVV+E+ +  LEPYLGLHYPATDIPQA+RFLFM
Sbjct: 237  DTVVQEVRELTGYDRVMAYRFHEDEHGEVVAEMRRPDLEPYLGLHYPATDIPQASRFLFM 296

Query: 284  KNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVV 343
            KN+VRMI DC A  V V+QD++L   L+LCGSTLRAPH CH QYM NM SIASLVM+V  
Sbjct: 297  KNRVRMICDCCAPPVNVIQDKRLRQPLSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTT 356

Query: 344  N---DEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELEL 400
            N   D+ E G    PQ R++LWGLVVCH+T+PR +PFPLRYACEFL QVF I +NKE+EL
Sbjct: 357  NENGDDSEGGGQQQPQNRRKLWGLVVCHHTSPRVIPFPLRYACEFLMQVFGIQLNKEVEL 416

Query: 401  EYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPN 460
              Q+ EK+ILR Q +LCDML+RDAP+GIV+Q+PNIMDLVKCDGAALLY  ++W LG TP 
Sbjct: 417  AAQLREKHILRVQPVLCDMLLRDAPVGIVSQTPNIMDLVKCDGAALLYGKRLWLLGTTPT 476

Query: 461  DFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRS 520
            + Q+ DI  WL E+H DSTGLS DSL +AGY GA +LGD VCG+AA RI+ KD +FWFRS
Sbjct: 477  EAQILDIADWLLEHHRDSTGLSTDSLAEAGYPGAASLGDAVCGIAAARITSKDFLFWFRS 536

Query: 521  QTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILR 580
             TA E+ WGGAKH+P++KDDGR+MHPRSSFKAFLEVVK RSLPW+D EMDAIHSLQLILR
Sbjct: 537  HTAKEIIWGGAKHDPNDKDDGRRMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILR 596

Query: 581  NAFKDVGTLDLDTKS-IHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVN 639
            ++F D+   D D+K+ IH++L DL+++G+ EL AVT+EMVRLIETATVPILA+D +GLVN
Sbjct: 597  DSFHDID--DSDSKTMIHARLNDLRLQGIDELSAVTNEMVRLIETATVPILAIDSNGLVN 654

Query: 640  GWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSK 699
            GWNTK AELTGL  D+ IG+  + LV+  S++ VK+MLYLALQG+EEQN++ ++KT G +
Sbjct: 655  GWNTKAAELTGLLADEVIGRPLIDLVQHDSVEIVKKMLYLALQGEEEQNVEIKLKTFGIQ 714

Query: 700  INDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLI 759
                P+ LIVNAC+SRDL +NVVGVCFVAQD+T Q+  MDKFT ++GDY+AIVQNPNPLI
Sbjct: 715  EEKGPVVLIVNACSSRDLEENVVGVCFVAQDVTWQRIAMDKFTHLQGDYRAIVQNPNPLI 774

Query: 760  PPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGI 819
            PPIFG+DE+G+C EWNPAM KLTGWKREEVI K+L+ EVFG +   C+LK Q+    L I
Sbjct: 775  PPIFGADEYGYCSEWNPAMEKLTGWKREEVIGKMLVGEVFGIHRMSCQLKGQDGLTKLRI 834

Query: 820  VLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQAL 879
            VLN AM+G++ EK PF FF R+GK  E LL  NK+ D EG +TGVFCFL + S ELQQAL
Sbjct: 835  VLNNAMAGKETEKFPFSFFDRHGKNTEALLSANKRTDAEGIITGVFCFLHVTSTELQQAL 894

Query: 880  HVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQ 939
             VQR++EQ A+ RLK LAY +++IRNPL GIIF+RK+ME T+L  EQK+++ TSA CQRQ
Sbjct: 895  QVQRMAEQAAMDRLKELAYIRQEIRNPLYGIIFTRKLMESTDLSEEQKQIVQTSALCQRQ 954

Query: 940  LHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSE 999
            L K+LDD+DL+SI DGYL+L+ +EFTL  VL A +SQ M+ S  KG++++ ++ E+I + 
Sbjct: 955  LVKVLDDADLESIEDGYLELDTIEFTLGTVLDAVVSQGMILSREKGLQLIRDSPEEIKTM 1014

Query: 1000 TLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGG 1059
             LYGD +RLQQ+L++FL  ++ F  + G +      TK  LG  V++ ++E RITH+G G
Sbjct: 1015 CLYGDQLRLQQILSNFLINALRFSTSEGWVGNKVVPTKRHLGSGVNVMHMEFRITHSGQG 1074

Query: 1060 IPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
            IPE L+ +MF    D  +EG+ L + ++LVK+MNGDVQYLREAG+S+FI++VE   A 
Sbjct: 1075 IPEELIKEMFVHNQDMFQEGLGLYMCQQLVKIMNGDVQYLREAGRSSFIINVEFPLAQ 1132


>sp|Q39557|PHY2_CERPU Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1
          Length = 1121

 Score = 1373 bits (3554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/1123 (59%), Positives = 844/1123 (75%), Gaps = 16/1123 (1%)

Query: 1    MSSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGG 57
            MS+ +   SS+ + KS+HS RV AQTT DA L A +E SG S   FDYS SV      G 
Sbjct: 1    MSAPKKTYSSTTSAKSKHSVRV-AQTTADAALEAVYEMSGDSGDSFDYSKSV------GQ 53

Query: 58   DQQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSV 117
              +       TAYL  +Q+G LIQ FGC++A++E  F VIAYSENA E L ++  AVPS+
Sbjct: 54   SAESVPAGAVTAYLQRMQRGGLIQTFGCMVAVEEPNFCVIAYSENASEFLDLMPQAVPSM 113

Query: 118  GDHPVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGS 177
            G+  VLGIG+DI+T+FT  S +AL+KA    ++SLLNPI VHC+ SGKP YAI HR+   
Sbjct: 114  GEMDVLGIGTDIRTLFTPSSGAALEKAAATQDISLLNPITVHCRRSGKPLYAIAHRIDIG 173

Query: 178  LIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYD 237
            ++IDFE VK  +V ++AAGALQS+KLAAKAITRLQ+LP G +  LCDT+++EV ELTGYD
Sbjct: 174  IVIDFEAVKMNDVSVSAAGALQSHKLAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYD 233

Query: 238  RVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARH 297
            RVMAYKFHED+HGEVV+EI +  LEPYLGLHYPATDIPQA+RFLFMKN+VR+I DC A  
Sbjct: 234  RVMAYKFHEDEHGEVVAEIRRMDLEPYLGLHYPATDIPQASRFLFMKNRVRVIADCCASP 293

Query: 298  VKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQK 357
            VK++QD  +   ++L GSTLRAPH CH QYM NM SIASLVMAV++ND EE+    + Q+
Sbjct: 294  VKLIQDPDIKQPVSLAGSTLRAPHGCHAQYMGNMGSIASLVMAVIINDNEEDSRGAI-QR 352

Query: 358  RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLC 417
             ++LWGLVVCH+T+PR VPFPLR ACEFL QVF + +N E+EL  Q+ EK+ILRTQTLLC
Sbjct: 353  GRKLWGLVVCHHTSPRTVPFPLRSACEFLMQVFGMQLNMEVELAAQLREKHILRTQTLLC 412

Query: 418  DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMD 477
            DML+RDAP+GIV+Q+PNIMDLVKCDGAAL Y  + W LG TP + Q+ DI  WL EYH D
Sbjct: 413  DMLLRDAPIGIVSQTPNIMDLVKCDGAALYYGKRFWLLGTTPTENQIKDIAEWLLEYHKD 472

Query: 478  STGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE 537
            STGLS DSL DA Y GA  LGD VCGMAA +I+ KD +FWFRS TA EV+WGGAKH+P E
Sbjct: 473  STGLSTDSLADANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDPAE 532

Query: 538  KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKS-I 596
            KDDGRKMHPRSSFKAFLEVVK RSLPW+D EMDAIHSLQLILR +F+D+   D DTK+ I
Sbjct: 533  KDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDID--DSDTKTMI 590

Query: 597  HSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKA 656
            H++L DLK+ GM EL  V +EMVRLIETAT PILAVD  G++NGWN KIA +TGL V +A
Sbjct: 591  HARLNDLKLHGMDELSVVANEMVRLIETATAPILAVDSTGMINGWNAKIAHVTGLPVSEA 650

Query: 657  IGKHFLT-LVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASR 715
            +G+  +  LV D S+  V+R+LYLA QG+EEQN++ ++KT G++   + + LIVNAC+SR
Sbjct: 651  MGRSLVKDLVLDESVVVVERLLYLASQGEEEQNVEIKLKTFGTQTEKEAVILIVNACSSR 710

Query: 716  DLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWN 775
            D+ D+VVGVCFV QD+T QK  MDKFTRI+GDYK IV+NP+PLIPPIFG DE+G+C EWN
Sbjct: 711  DVSDSVVGVCFVGQDVTGQKMFMDKFTRIQGDYKTIVKNPHPLIPPIFGGDEYGYCFEWN 770

Query: 776  PAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPF 835
            PAM  LTGWK +EV+ KLL+ E+FG  M CCRLK+Q++     I LN AM G + +K  F
Sbjct: 771  PAMEALTGWKHDEVVGKLLVGEIFGMEMMCCRLKSQDSMTKFMISLNNAMDGTNTDKFSF 830

Query: 836  GFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKA 895
             F  R GK+ E LL  NK+ + +G +TGVFCFLQ+AS ELQQAL VQR +E+ A+ +LK 
Sbjct: 831  SFCNREGKFVEALLSTNKRTNADGVITGVFCFLQIASSELQQALTVQRATEKVAIAKLKE 890

Query: 896  LAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDG 955
            LAY +++I+NPL GI F+R+++E T+L  +QK+ L TSA C++QL K+L+D DL+SI DG
Sbjct: 891  LAYIRQEIKNPLCGITFTRQLLEDTDLSDDQKQFLDTSAVCEQQLQKVLNDMDLESIEDG 950

Query: 956  YLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADF 1015
            YL+L+  EF +  V+ A ISQ M  S  KG++I+ ET  +I +  L+GD IRLQQVL+DF
Sbjct: 951  YLELDTAEFEMGTVMDAVISQGMTTSREKGLQIIRETPREISTMRLFGDQIRLQQVLSDF 1010

Query: 1016 LSISINFVPNG-GQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGD 1074
            L  +I F P+  G + +    T+ +LG +VH+ +LE R++H GGG+P+ L+ +M+     
Sbjct: 1011 LINAIRFTPSSEGWVKIKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYDRAKG 1070

Query: 1075 TSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
             ++EG+ L + RKLV+LMNGDVQY+RE  +  F+V VEL  A 
Sbjct: 1071 MTQEGLGLNMCRKLVRLMNGDVQYVRENAQCYFVVYVELPMAQ 1113


>sp|Q01549|PHY1_SELMA Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1
          Length = 1134

 Score = 1367 bits (3537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1129 (59%), Positives = 858/1129 (75%), Gaps = 20/1129 (1%)

Query: 1    MSSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGG 57
            MS+++   SS ++ KS+HS RV AQTT DAKLHA +E SG S   FDYS S+  + + G 
Sbjct: 1    MSTTKLTYSSGSSAKSKHSVRV-AQTTADAKLHAVYEESGESGDSFDYSKSINATKSTG- 58

Query: 58   DQQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSV 117
              +    +  TAYL  +Q+G L+QPFGC+LA++E +F+VIA+S+NA E+L ++  +VPS+
Sbjct: 59   --ETIPAQAVTAYLQRMQRGGLVQPFGCMLAVEEGSFRVIAFSDNAGEMLDLMPQSVPSL 116

Query: 118  GD--HPVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVT 175
            G     VL IG+D +T+FTA +ASAL+KA G  ++S+LNPI V  KTS KPFYAIVHR+ 
Sbjct: 117  GSGQQDVLTIGTDARTLFTA-AASALEKAAGAVDLSMLNPIWVQSKTSAKPFYAIVHRID 175

Query: 176  GSLIIDFEPVKPYEVPM-TAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELT 234
              L++D EPVK  +  + +AAGALQS+KLAAKAI+RLQSLP G +  LCDT+++EV ++T
Sbjct: 176  VGLVMDLEPVKASDTRVGSAAGALQSHKLAAKAISRLQSLPGGDIGLLCDTVVEEVRDVT 235

Query: 235  GYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCR 294
            GYD VMAYKFHED+HGEVV+EI +S LEPYLGLHYPATDIPQA+RFLFMKN+VRMI DC 
Sbjct: 236  GYDLVMAYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCS 295

Query: 295  ARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTL 354
            A  VK+ QD++L   ++L GSTLRAPH CH QYM NM S+ASLVMA+++ND +E      
Sbjct: 296  APPVKITQDKELRQPISLAGSTLRAPHGCHAQYMGNMGSVASLVMAMIINDNDEPSGGGG 355

Query: 355  ---PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILR 411
                 K +RLWGLVVCH+T+PR VPF LR ACEFL QVF + +N E  +   + EK+ILR
Sbjct: 356  GGGQHKGRRLWGLVVCHHTSPRSVPF-LRSACEFLMQVFGLQLNMEAAVAAHVREKHILR 414

Query: 412  TQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWL 471
            TQTLLCDML+RDAP+GIV+QSPNIMDLVKCDGAAL Y  + W LG+TP++ Q+ DI  WL
Sbjct: 415  TQTLLCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRFWLLGITPSEAQIKDIAEWL 474

Query: 472  SEYHMDSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGA 531
             E+H DSTGLS DSL DAGY GA +LGD VCGMAA +I+ KD +FWFRS TA EV+WGGA
Sbjct: 475  LEHHKDSTGLSTDSLADAGYPGAASLGDEVCGMAAAKITAKDFLFWFRSHTAKEVKWGGA 534

Query: 532  KHEPDEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDL 591
            KH+PD+KDDGRKMHPRSSFKAFLEVVK RSLPW+D EMDAIHSLQLILR +F+D+   D 
Sbjct: 535  KHDPDDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDID--DS 592

Query: 592  DTKS-IHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTG 650
            DTK+ IH++L DLK++GM EL  V +EMVRLIETAT PILAVD  G +NGWN K+A++TG
Sbjct: 593  DTKTMIHARLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSSGFINGWNAKVADVTG 652

Query: 651  LSVDKAIGKHFLT-LVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIV 709
            L V +A+G+     LV   S D V+R+LYLALQG EEQN++ ++KT G + + + + L+V
Sbjct: 653  LPVTEAMGRSLAKELVLHESADMVERLLYLALQGDEEQNVELKLKTFGGQKDKEAVILVV 712

Query: 710  NACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFG 769
            NACASRD+ DNVVGVCFV QD+T QK VMDKFTRI+GDYKAIVQNPNPLIPPIFG+DEFG
Sbjct: 713  NACASRDVSDNVVGVCFVGQDVTGQKVVMDKFTRIQGDYKAIVQNPNPLIPPIFGADEFG 772

Query: 770  WCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQD 829
            +C EWNPAM KL+GW+REEV+ K+L+ E+FG  M  CRLK Q+A     IVLN A  GQD
Sbjct: 773  YCSEWNPAMEKLSGWRREEVLGKMLVGEIFGIQMMYCRLKGQDAVTKFMIVLNSAADGQD 832

Query: 830  PEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTA 889
             EK PF FF R GKY E LL   K+ D EG++TGVFCFL +AS ELQQAL VQR +E+ A
Sbjct: 833  TEKFPFAFFDRQGKYVEALLTATKRADAEGSITGVFCFLHIASAELQQALTVQRATEKVA 892

Query: 890  LKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDL 949
            L +LK LAY +++I+NPL GI+F+R +ME T+L  +QK+ + T A C++Q+ KILDD DL
Sbjct: 893  LSKLKELAYIRQEIKNPLYGIMFTRTLMETTDLSEDQKQYVETGAVCEKQIRKILDDMDL 952

Query: 950  DSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQ 1009
            +SI DGYL+L+  EF +  V+ A ISQ M+ S  K ++++ ET ++I +  LYGD +RLQ
Sbjct: 953  ESIEDGYLELDTTEFMMGTVMDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQ 1012

Query: 1010 QVLADFLSISINFVPNGGQLM-VSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQM 1068
            QVLADFL  +I F P+    + +  + ++ +LG  VH+ +LE RITH G G+PE L+ +M
Sbjct: 1013 QVLADFLLNAIRFTPSSENWVGIKVATSRKRLGGVVHVMHLEFRITHPGVGLPEELVQEM 1072

Query: 1069 FGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
            F      ++EG+ L + RKLVKLMNG+V+Y+REAGK+ F+VS+EL  A 
Sbjct: 1073 FDRGRGMTQEGLGLSMCRKLVKLMNGEVEYIREAGKNYFLVSLELPLAQ 1121


>sp|P36505|PHY1_PHYPA Phytochrome 1 OS=Physcomitrella patens subsp. patens GN=PHY1 PE=2
            SV=1
          Length = 1132

 Score = 1330 bits (3441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1106 (58%), Positives = 825/1106 (74%), Gaps = 15/1106 (1%)

Query: 18   HSARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHI 74
            HS RV AQTT DA L A FE SG S   FDYS SV   S +  +  P      TAYL  +
Sbjct: 19   HSVRV-AQTTADAALQAVFEKSGDSGDSFDYSKSV---SKSTAESLPSG--AVTAYLQRM 72

Query: 75   QKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFT 134
            Q+G L Q FGC++A++   F+VIAYSENAPE+L +V  AVPSVG+   L IG+D++T+FT
Sbjct: 73   QRGGLTQSFGCMIAVEGTGFRVIAYSENAPEILDLVPQAVPSVGEMDTLRIGTDVRTLFT 132

Query: 135  APSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTA 194
            A S ++L+KA    E+SLLNPI V+C+ SGK  YAI HR+   ++IDFE VK  +  ++A
Sbjct: 133  ASSVASLEKAAEAQEMSLLNPITVNCRRSGKQLYAIAHRIDIGIVIDFEAVKTDDHLVSA 192

Query: 195  AGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVS 254
            AGALQS+KLAAKAITRLQ+LP G++  LCDT+++EV ELTGYDRVMAY+FHED+HGEVV+
Sbjct: 193  AGALQSHKLAAKAITRLQALPGGNIGLLCDTVVEEVRELTGYDRVMAYRFHEDEHGEVVA 252

Query: 255  EITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCG 314
            EI ++ LEPYLGLHYP TDIPQA+RFLFMKNKVR+I DC A  VKV+QD  L   ++L G
Sbjct: 253  EIRRADLEPYLGLHYPGTDIPQASRFLFMKNKVRIIADCSAPPVKVIQDPTLRQPVSLAG 312

Query: 315  STLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRF 374
            STLR+PH CH QYM NM SIASLVMAV++ND EE+   ++ Q+ ++LWGLVVCH+T+PR 
Sbjct: 313  STLRSPHGCHAQYMGNMGSIASLVMAVIINDNEEDSHGSV-QRGRKLWGLVVCHHTSPRT 371

Query: 375  VPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPN 434
            VPFPLR AC FL QVF + +N E+E   Q+ EK+ILRTQTLLCDML+RDAP+GIV+Q PN
Sbjct: 372  VPFPLRSACGFLMQVFGLQLNMEVESAAQLREKHILRTQTLLCDMLLRDAPIGIVSQIPN 431

Query: 435  IMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGA 494
            IMDLVKCDGAAL Y    W LG TP + Q+ DI  WL EYH DSTGLS DSL DA Y  A
Sbjct: 432  IMDLVKCDGAALYYGKPFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAA 491

Query: 495  LALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFL 554
              LGD VCGMAA +I+ KD +FWFRS TA E++WGGAKH+P E  DGRKMHPRSSFKAFL
Sbjct: 492  HLLGDAVCGMAAAKITAKDFLFWFRSHTAKEIKWGGAKHDPGENHDGRKMHPRSSFKAFL 551

Query: 555  EVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKS-IHSKLCDLKIEGMKELEA 613
            EVVK RSLPW+D EMDAIHSLQLILR +F+D+   D DTK+ IH++L DLK+  M EL  
Sbjct: 552  EVVKRRSLPWEDVEMDAIHSLQLILRGSFQDIA--DSDTKTMIHARLNDLKLHDMDELSV 609

Query: 614  VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLT-LVEDSSIDT 672
            V +EMVRLIETAT PILAVD +G++NGWN KIA++TGL V +A G+  +  LV D S+  
Sbjct: 610  VANEMVRLIETATAPILAVDSNGMINGWNAKIAQVTGLPVSEAHGRSLVKDLVTDESVAV 669

Query: 673  VKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732
            V+R+LYLAL+G+EEQN++ ++KT G++     + LIV+AC+S  + +NVVGVCFV QD+T
Sbjct: 670  VERLLYLALRGEEEQNVEIKLKTFGTQTEKGVVILIVDACSSIHVSENVVGVCFVGQDVT 729

Query: 733  PQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDK 792
             QK  MDKFTRI+GDYK IVQNP+PLIPPIFG+DEFG+C EWNPAM  LTGWK++EV+ K
Sbjct: 730  GQKMFMDKFTRIQGDYKTIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKKDEVVGK 789

Query: 793  LLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVN 852
            LL+ E+FG  M CCR+K+Q+A     I LN AM GQ  +K  F FF R GKY + LL  N
Sbjct: 790  LLVGEIFGMQMMCCRMKSQDAMTKFMIALNTAMDGQSTDKFTFSFFDREGKYVDVLLSTN 849

Query: 853  KKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIF 912
            K+ + +G +TGVFCFLQ+AS ELQQAL VQR +E+ A+ +LK LAY  R+I+NPL G+ F
Sbjct: 850  KRTNADGVITGVFCFLQIASSELQQALKVQRATEKVAVAKLKELAYIVREIKNPLCGLTF 909

Query: 913  SRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVA 972
            +R+++E T+L  +Q++ L TSA C++QL K L+D DL+SI DGYL+L+  EF +  V+ A
Sbjct: 910  TRQLLEDTDLSDDQQQFLDTSAVCEQQLQKSLNDMDLESIEDGYLELDTAEFEMGTVMNA 969

Query: 973  SISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNG-GQLMV 1031
             ISQ M  S  KG++I  ET  +I +  L GD IRLQQVL+DFL  ++ F P+  G + +
Sbjct: 970  VISQGMTTSREKGLQIFRETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGWVKI 1029

Query: 1032 SSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKL 1091
                T+ +LG SVH+ +LE R++H G G+PE L+ +M+      ++EG+ L + RKLV+L
Sbjct: 1030 KVVPTRKRLGGSVHVVHLEFRVSHPGAGLPEELVLEMYDRGKGMTQEGLGLNMCRKLVRL 1089

Query: 1092 MNGDVQYLREAGKSTFIVSVELAAAH 1117
            MNGDV Y+REA +  F+V+VEL  A 
Sbjct: 1090 MNGDVHYVREAMQCYFVVNVELPMAQ 1115


>sp|Q10CQ8|PHYC_ORYSJ Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1
          Length = 1137

 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1125 (56%), Positives = 833/1125 (74%), Gaps = 15/1125 (1%)

Query: 2    SSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQP 61
            S++R   S S++ +S+HSARV+AQT +DA+LHA+FE S   FDYS+SV  ++ +G     
Sbjct: 6    SNNRATCSRSSSARSKHSARVVAQTPMDAQLHAEFEGSQRHFDYSSSVGAANRSGA---- 61

Query: 62   RSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHP 121
             +    +AYL ++Q+G+ +QPFGCLLA+  +TF ++AYSENA E+L +  HAVP++    
Sbjct: 62   -TTSNVSAYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQRE 120

Query: 122  VLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIID 181
             L +G+D++T+F + S  ALQKA  FG+V+LLNPILVH +TSGKPFYAI+HR+   L+ID
Sbjct: 121  ALAVGTDVRTLFRSHSFVALQKAATFGDVNLLNPILVHARTSGKPFYAIMHRIDVGLVID 180

Query: 182  FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMA 241
             EPV P ++P+TA GA++SYKLAA+AI RLQSLPSG++  LCD +++EV ELTGYDRVMA
Sbjct: 181  LEPVNPVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMA 240

Query: 242  YKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVL 301
            YKFHED+HGEV++E  +S LEPYLGLHYPATDIPQA+RFLFMKNKVRMI DC A  VK++
Sbjct: 241  YKFHEDEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKII 300

Query: 302  QDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTL----PQK 357
            QD+ L   +++CGSTLRAPH CH QYM +M S+ASLVM+V +N++E++  +T     P+ 
Sbjct: 301  QDDSLTQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKG 360

Query: 358  RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLC 417
            RK LWGL+VCH+T+PRFVPFPLRYACEFL QVF I +NKE+EL  Q  E++ILRTQTLLC
Sbjct: 361  RK-LWGLMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLC 419

Query: 418  DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMD 477
            DML+RDAP+GI TQSPN+MDLVKCDGAAL Y+N++W LG TP++ ++ +IV+WL EYH  
Sbjct: 420  DMLLRDAPVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDG 479

Query: 478  STGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEP-D 536
            STGLS DSL +AGY GA ALGDVVCGMAA++IS KD IFWFRS TA E++WGGAKHEP D
Sbjct: 480  STGLSTDSLVEAGYPGAAALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPID 539

Query: 537  EKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDV-GTLDLDTKS 595
              D+GRKMHPRSSFKAFLEVVK RS+PW+D EMDAIHSLQLILR + +D     + + KS
Sbjct: 540  ADDNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKS 599

Query: 596  IHSKLCD--LKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSV 653
            I +   D   KI+G+ EL  VT+EMVRLIETAT PILAVD+ G +NGWN K AELTGL V
Sbjct: 600  IVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPV 659

Query: 654  DKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACA 713
             +AIGK  + LV D S++ VK++L  ALQG EEQN+Q ++KT   + N+ P+ L+VNAC 
Sbjct: 660  MEAIGKPLVDLVIDDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACC 719

Query: 714  SRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCE 773
            SRDL + VVGVCFVAQD+T Q  +MDK+TRI+GDY AIV+NP+ LIPPIF  ++ G C E
Sbjct: 720  SRDLSEKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLE 779

Query: 774  WNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKV 833
            WN AM K+TG KRE+ +DKLL+ EVF  +   CR+K+      L I++N  +SGQDPEK+
Sbjct: 780  WNEAMQKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKL 839

Query: 834  PFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRL 893
             FGFF  +GKY E L+   K+ D EG +TG  CFL +AS ELQ AL VQ++SEQ A+   
Sbjct: 840  LFGFFNTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSF 899

Query: 894  KALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSII 953
            K L Y ++++RNPL+G+ F+R ++E ++L  EQ++LL ++  CQ QL KIL D+DL+SI 
Sbjct: 900  KELTYIRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNVLCQEQLKKILHDTDLESIE 959

Query: 954  DGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLA 1013
              Y ++  V+F L E L   + Q M +S  K I I  +   ++    L GD++RLQQVLA
Sbjct: 960  QCYTEMSTVDFNLEEALNTVLMQAMPQSKEKQISIDRDWPAEVSCMHLCGDNLRLQQVLA 1019

Query: 1014 DFLSISINFV-PNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSE 1072
            DFL+  + F  P  G +++      + +G  + +A+LE R+ H   G+PE L+ +MF   
Sbjct: 1020 DFLACMLQFTQPAEGPIVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFRHS 1079

Query: 1073 GDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
               S EG+ L IS+KLVK M+G VQYLRE+  S+FIV VE   A 
Sbjct: 1080 PGASREGLGLYISQKLVKTMSGTVQYLRESESSSFIVLVEFPVAQ 1124


>sp|A2XM23|PHYC_ORYSI Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=2 SV=2
          Length = 1137

 Score = 1306 bits (3380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1125 (56%), Positives = 832/1125 (73%), Gaps = 15/1125 (1%)

Query: 2    SSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQP 61
            S++R   S S++ +S+HSARV+AQT +DA+LHA+FE S   FDYS+SV  ++ +G     
Sbjct: 6    SNNRATCSRSSSARSKHSARVVAQTPMDAQLHAEFEGSQRHFDYSSSVGAANRSGA---- 61

Query: 62   RSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHP 121
             +    +AYL ++Q+G+ +QPFGCLLA+  +TF ++AYSENA E+L +  HAVP++    
Sbjct: 62   -TTSNVSAYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQRE 120

Query: 122  VLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIID 181
             L +G+D++T+F + S  ALQKA  FG+V+LLNPILVH +TSGKPFYAI+HR+   L+ID
Sbjct: 121  ALAVGTDVRTLFRSHSFVALQKAATFGDVNLLNPILVHARTSGKPFYAIMHRIDVGLVID 180

Query: 182  FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMA 241
             EPV P ++P+TA GA++SYKLAA+AI RLQSLPSG++  LCD +++EV ELTGYDRVMA
Sbjct: 181  LEPVNPVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMA 240

Query: 242  YKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVL 301
            YKFHED+HGEV++E  +S LEPYLGLHYPATDIPQA+RFLFMKNKVRMI DC A  VK++
Sbjct: 241  YKFHEDEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKII 300

Query: 302  QDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTL----PQK 357
            QD+ L   +++CGSTLRAPH CH QYM +M S+ASLVM+V +N++E++  +T     P+ 
Sbjct: 301  QDDSLTQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKG 360

Query: 358  RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLC 417
            RK LWGL+VCH+T+PRFVPFPLRYACEFL QVF I +NKE+EL  Q  E++ILRTQTLLC
Sbjct: 361  RK-LWGLMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLC 419

Query: 418  DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMD 477
            DML+RDAP+GI TQSPN+MDLVKCDGAAL Y+N++W LG TP++ ++ +IV+WL EYH  
Sbjct: 420  DMLLRDAPVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDG 479

Query: 478  STGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEP-D 536
            STGLS DSL +AGY GA ALGDVV GMAA++IS KD IFWFRS TA E++WGGAKHEP D
Sbjct: 480  STGLSTDSLVEAGYPGAAALGDVVYGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPID 539

Query: 537  EKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDV-GTLDLDTKS 595
              D+GRKMHPRSSFKAFLEVVK RS+PW+D EMDAIHSLQLILR + +D     + + KS
Sbjct: 540  ADDNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKS 599

Query: 596  IHSKLCD--LKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSV 653
            I +   D   KI+G+ EL  VT+EMVRLIETAT PILAVD+ G +NGWN K AELTGL V
Sbjct: 600  IVTAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPV 659

Query: 654  DKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACA 713
             +AIGK  + LV D S++ VK++L  ALQG EEQN+Q ++KT   + N+ P+ L+VNAC 
Sbjct: 660  MEAIGKPLVDLVIDDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACC 719

Query: 714  SRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCE 773
            SRDL + VVGVCFVAQD+T Q  +MDK+TRI+GDY AIV+NP+ LIPPIF  ++ G C E
Sbjct: 720  SRDLSEKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLE 779

Query: 774  WNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKV 833
            WN AM K+TG KRE+ +DKLL+ EVF  +   CR+K+      L I++N  +SGQDPEK+
Sbjct: 780  WNEAMQKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKL 839

Query: 834  PFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRL 893
             FGFF  +GKY E L+   K+ D EG +TG  CFL +AS ELQ AL VQ++SEQ A+   
Sbjct: 840  LFGFFNTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSF 899

Query: 894  KALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSII 953
            K L Y ++++RNPL+G+ F+R ++E ++L  EQ++LL ++  CQ QL KIL D+DL+SI 
Sbjct: 900  KELTYIRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNVLCQEQLKKILHDTDLESIE 959

Query: 954  DGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLA 1013
              Y ++  V+F L E L   + Q M +S  K I I  +   ++    L GD++RLQQVLA
Sbjct: 960  QCYTEMSTVDFNLEEALNTVLMQAMPQSKEKQISIDRDWPAEVSCMHLCGDNLRLQQVLA 1019

Query: 1014 DFLSISINFV-PNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSE 1072
            DFL+  + F  P  G +++      + +G  + +A+LE R+ H   G+PE L+ +MF   
Sbjct: 1020 DFLACMLQFTQPAEGPIVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFRHS 1079

Query: 1073 GDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAAAH 1117
               S EG+ L IS+KLVK M+G VQYLRE+  S+FIV VE   A 
Sbjct: 1080 PGASREGLGLYISQKLVKTMSGTVQYLRESESSSFIVLVEFPVAQ 1124


>sp|Q41046|PHY_PINSY Phytochrome OS=Pinus sylvestris PE=2 SV=1
          Length = 1131

 Score = 1274 bits (3296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1106 (56%), Positives = 810/1106 (73%), Gaps = 21/1106 (1%)

Query: 20   ARVIAQTTIDAKLHADFETSG---TSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQK 76
            A  +AQ   DA+L   FE SG    SFDY+ S++V + A  +QQ       TAYL  IQ+
Sbjct: 31   ATAMAQYNSDARLLQVFEQSGESGKSFDYTRSIQVHNRAVPEQQ------ITAYLSRIQR 84

Query: 77   GKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSV--GDHPVLGIGSDIKTIFT 134
            G  IQPFGC+LA++E TF++IAYSEN  E+L +   +VPS+      VL IG+D++T+FT
Sbjct: 85   GGRIQPFGCVLAVEETTFRIIAYSENE-EMLDLGAQSVPSMEKPQQDVLTIGTDVRTLFT 143

Query: 135  APSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTA 194
            A SA +L+KA    E+SL+NPI VHCK S KPFYAIVHR+   ++ID EP++  +  M+A
Sbjct: 144  AASAHSLEKAAVAQEISLMNPIWVHCKNSRKPFYAIVHRIDVGMVIDLEPLRTGDAFMSA 203

Query: 195  AGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVS 254
            AGA+QS KLA +AI+RLQSLP G +  LCDT+++ V ELTGYDRVM YKFHED+HGEVV+
Sbjct: 204  AGAVQSQKLAVRAISRLQSLPCGDVGLLCDTVVENVRELTGYDRVMVYKFHEDEHGEVVA 263

Query: 255  EITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCG 314
            EI +S LEPYLGLHYPATDIPQA+RFLFM+N+VRMI DC A  VKV+Q E+L   L L G
Sbjct: 264  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVG 323

Query: 315  STLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRF 374
            ST  APH CH QYM NM SI SL+MAV++N  ++EG  +  +   +LWGLVVCH+T+PR 
Sbjct: 324  STPSAPHGCHAQYMANMGSIRSLLMAVIINGNDDEGGGS-GRNSMKLWGLVVCHHTSPRA 382

Query: 375  VPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPN 434
            VPFPLRYACEFL Q   + +N EL+L  Q+ EK+ILRTQTLLCDML+RDAP+GIVTQSP+
Sbjct: 383  VPFPLRYACEFLMQALGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAPMGIVTQSPS 442

Query: 435  IMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGA 494
            I DLVKCDGAAL Y    W LGVTP + Q+ DI  WL E+H DSTGLS DSL DAGY GA
Sbjct: 443  IKDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGA 502

Query: 495  LALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFL 554
             +LGD VCGMA+ RI+ KD +FWFRS TA E++WGGAKH PD+KDD R+MHPRSSFKAFL
Sbjct: 503  ASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFL 562

Query: 555  EVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKS-IHSKLCDLKIEGMKELEA 613
            EVVK RSLPW + E+DAIHSLQLILR +F+D+   D  TK+ +HS+L  L+++G+ EL +
Sbjct: 563  EVVKRRSLPWDNVEIDAIHSLQLILRCSFRDID--DSGTKTMVHSRLNYLRLQGIDELSS 620

Query: 614  VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLT-LVEDSSIDT 672
            V SEMVRLIETAT PILAVD +GLVNGWN K+AELTGL V +A+G   +  LV + S++ 
Sbjct: 621  VASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEQSVER 680

Query: 673  VKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732
            V++ML+ AL+G+EE+N++  +KT G +   + + L+VNAC+SRD  DN+VGVCFV QD+T
Sbjct: 681  VEKMLHNALRGEEEKNVEMMLKTFGPQKEKEAVILVVNACSSRDFTDNIVGVCFVGQDVT 740

Query: 733  PQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDK 792
             QK VMDKF RI+GDY++IVQ+PNPLIPPIF SDE+  C EWN AM K+TGW  +EVI K
Sbjct: 741  SQKVVMDKFIRIQGDYRSIVQSPNPLIPPIFASDEYACCSEWNAAMEKVTGWTHDEVIGK 800

Query: 793  LLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVN 852
            +L+ E+FG    CCRLK Q+A     IVL++   GQ+ EK PF FF + GKY E LL  N
Sbjct: 801  MLVGEIFG---GCCRLKGQDAVTKFTIVLHQCNHGQEIEKFPFAFFDKQGKYVEALLTAN 857

Query: 853  KKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIF 912
            K+ D +G +TG FCF ++AS ELQ AL VQR  E+    RLK LAY +++I+NPL G++F
Sbjct: 858  KRTDADGRITGSFCFFRIASSELQHALEVQRQQEKKCFARLKELAYIRQEIKNPLYGMMF 917

Query: 913  SRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVA 972
            +RK++E T+L  +QK+ + TSA C+RQ+ K++DD DL+S+ DGY++L+  EF L  V+ A
Sbjct: 918  TRKLLEETDLSDDQKQFVETSAVCERQMQKVMDDMDLESLEDGYMELDTAEFILGTVIDA 977

Query: 973  SISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNG-GQLMV 1031
             +SQ M+    KG++++ E   ++ +  LYGD +++QQ+LADFL   + F P+  G + +
Sbjct: 978  VVSQGMIVLREKGLQLIREIPGEVKTMRLYGDEVKIQQILADFLLNVLRFTPSPEGWVAI 1037

Query: 1032 SSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKL 1091
                T  QLG  +H+ +LE RITH G G+P  L+  +F      ++EG+ L + RKL+KL
Sbjct: 1038 KVFPTLKQLGGGLHVVHLEFRITHPGLGLPAELVQDLFDRSQWATQEGVGLSMCRKLLKL 1097

Query: 1092 MNGDVQYLREAGKSTFIVSVELAAAH 1117
            MNGDV+Y+RE+G   F+V+VE   A 
Sbjct: 1098 MNGDVRYIRESGICYFLVNVEFPMAQ 1123


>sp|P42496|PHY_ADICA Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1 PE=2 SV=2
          Length = 1118

 Score = 1263 bits (3267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 615/1106 (55%), Positives = 810/1106 (73%), Gaps = 24/1106 (2%)

Query: 21   RVIAQTTIDAKLHADFETSGTS--FDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGK 78
            R IAQT+ DAKL+A +E S  S  FDYS SV    +AG  ++  S ++ TAYL  +Q+G 
Sbjct: 20   RRIAQTSADAKLYAAYEESSESGSFDYSQSV----SAG--KEGISSQLVTAYLQRMQRGG 73

Query: 79   LIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSA 138
            L+Q FGCL+A++E+TF+V+AY  NAPE+L +   AVP++G +  L IG+D++T+ +  SA
Sbjct: 74   LVQQFGCLIAVEEETFRVLAYGANAPEMLDVATQAVPTMGQYSRLCIGADVRTLLSPASA 133

Query: 139  SALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGAL 198
            SAL + +G  +VS+ NPI V  ++SGKPFYAI+HR    L+ID EP++P +  +T  GAL
Sbjct: 134  SALDRVIGVVDVSMFNPITVQSRSSGKPFYAILHRNDVGLVIDLEPIRPDDASITG-GAL 192

Query: 199  QSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITK 258
            QS+KLAAKAI RLQSLP G +  LCD++++EV ELTG+DRVMAYKFHED+HGEVV+EI +
Sbjct: 193  QSHKLAAKAIARLQSLPGGDIGLLCDSVVEEVHELTGFDRVMAYKFHEDEHGEVVAEIRR 252

Query: 259  SGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLR 318
            + LEPY+GLHYPATDIPQAARFLFMKN+VRMI DCR   VK++QD+ L   ++L GS LR
Sbjct: 253  TDLEPYIGLHYPATDIPQAARFLFMKNRVRMICDCRLPPVKLIQDKTLSQPMSLTGSKLR 312

Query: 319  APHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFP 378
            APH CH QYM NMNSI+SLVMAV+VND +++      Q  K LWGLVVCH+T+PR+VPFP
Sbjct: 313  APHGCHTQYMANMNSISSLVMAVIVNDSDDDSPGHSSQGIK-LWGLVVCHHTSPRYVPFP 371

Query: 379  LRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDL 438
            +R ACEFL QVF++ +N E+ +  Q+ EK+ILRTQTLLCDML+RDAP+GIV+QSPNIMDL
Sbjct: 372  VRSACEFLMQVFSLQLNMEVGMAAQVREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDL 431

Query: 439  VKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALALG 498
            V CDGAAL Y  K W LG TP + Q+ DI +WL + H DSTGLS DSL   GY  A  LG
Sbjct: 432  VTCDGAALYYGKKCWLLGTTPTEAQIVDIAAWLLDCHKDSTGLSTDSLAKTGYPEASCLG 491

Query: 499  DVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEVVK 558
            D VCG+AA +I+  D +FWFRS TA EVRWGGA+H+P+E+DDGR+MHPRSSFKAFLEVVK
Sbjct: 492  DAVCGLAAAKITATDFLFWFRSHTAKEVRWGGARHDPEERDDGRRMHPRSSFKAFLEVVK 551

Query: 559  TRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKS-IHSKLCDLKIEGMKELEAVTSE 617
             +SLPW+D EMDAIHSLQLILR +F+D+   D +TK+ IH++L DLK++G+ EL  V SE
Sbjct: 552  QQSLPWEDVEMDAIHSLQLILRGSFQDID--DSNTKTMIHARLNDLKLQGLDELSTVASE 609

Query: 618  MVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLT-LVEDSSIDTVKRM 676
            MVRLIETAT PILAVD  GL+NGWN K+AELTGLS + A+GK     LV + S   V+R+
Sbjct: 610  MVRLIETATAPILAVDGQGLINGWNGKVAELTGLSFETAMGKSLAKELVHEESKTIVERV 669

Query: 677  LYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKT 736
            L+LAL+G+EEQ+I+  ++T+        + LIVN C SRD+ +NVVGVCFV QD+T QK 
Sbjct: 670  LHLALEGEEEQDIEIHLRTYDQHKQKGVVILIVNTCCSRDVSNNVVGVCFVGQDVTGQKL 729

Query: 737  VMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLA 796
            V+D+F RI+GDYKAIVQ+ NPLIPPIFG+DE+G+C EWN AM KL+ W+REEV+ K+L+ 
Sbjct: 730  VLDRFIRIQGDYKAIVQSLNPLIPPIFGADEYGFCSEWNAAMEKLSNWRREEVLGKMLVG 789

Query: 797  EVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLD 856
            E+FG  M CCRL+ Q+    L IVLN A++GQ+ EK P  F+ RNG+  E LL  +K+ D
Sbjct: 790  EIFGLQMVCCRLQGQDVVTKLMIVLNDAVNGQESEKFPLVFYDRNGRRVEALLIASKRTD 849

Query: 857  REGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKM 916
             +G +TGVFCFL  AS EL QAL ++R  E+      K L+Y K +++ PL G+ F+R +
Sbjct: 850  ADGRITGVFCFLHTASPELLQALIIKRAKEKVD----KELSYVKEELKKPLEGLAFTRTV 905

Query: 917  MEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVASISQ 976
            +EGT L  EQ++L+ T+A C+RQL KIL+D DL++I +GY+DLEM EF +  V+ A ISQ
Sbjct: 906  LEGTNLTIEQRQLIKTNAWCERQLRKILED-DLNNIEEGYMDLEMSEFFMGSVIDAVISQ 964

Query: 977  VMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQ-----LMV 1031
             M  S  KG++I+ E    +    L+GD  RLQQVLAD L  +IN      +     + +
Sbjct: 965  GMAASRGKGVQILTEIPNDVKLMCLFGDQARLQQVLADLLFCAINHATTTNEDEKDWVTI 1024

Query: 1032 SSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKL 1091
              S TK +L   VHL + E RI+H+G GI E L+++M       + EG+++ IS  L++L
Sbjct: 1025 KVSRTKTRLDDGVHLMHFEFRISHSGQGISEALVEEMTNKSQKWTPEGLAISISCTLIRL 1084

Query: 1092 MNGDVQYLREAGKSTFIVSVELAAAH 1117
            MNGDV+Y  +AG   F+V+++   AH
Sbjct: 1085 MNGDVKYTTDAGNKCFLVTIQFPLAH 1110


>sp|P93528|PHYC_SORBI Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1
          Length = 1135

 Score = 1260 bits (3260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1104 (56%), Positives = 805/1104 (72%), Gaps = 14/1104 (1%)

Query: 22   VIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKLIQ 81
            V+AQT +DA+LHA+FE+S  +FDYS+SV     +   +   S    + Y   +Q+G  IQ
Sbjct: 25   VVAQTPVDAQLHAEFESSQRNFDYSSSV-----SAAIRPSVSTSTVSTYHQTMQRGLYIQ 79

Query: 82   PFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASAL 141
            PFGCLLA+   TF ++AYSENAPE+L +  HAVP++     L +G+D++T+F + S+ AL
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 142  QKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSY 201
             KA  FGEV+LLNPILVH +TSGKPFYAI+HR+   L+ID EPV P +VP+TAAGAL+SY
Sbjct: 140  HKAATFGEVNLLNPILVHARTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALKSY 199

Query: 202  KLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGL 261
            KLAAKAI+RLQSLPSG++  LCD +++EV ELTGYDRVMAYKFHED+HGEV+SE  +S L
Sbjct: 200  KLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRSDL 259

Query: 262  EPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPH 321
            EPYLGLHYPATDIPQA+RFLFMKNKVRMI DC A  VK++QD+ L   L+LCGSTLRA H
Sbjct: 260  EPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRASH 319

Query: 322  SCHLQYMENMNSIASLVMAVVVNDEEEE----GDNTLPQKRKRLWGLVVCHNTTPRFVPF 377
             CH QYM NM S+ASLVM+V ++++EEE    G +  P+ RK LWGLVVCH+T+PRFVPF
Sbjct: 320  GCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRK-LWGLVVCHHTSPRFVPF 378

Query: 378  PLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMD 437
            PLRYACEFL QVF I +NKE+EL  Q  E++ILRTQTLL DML+RDAP+GI TQSPN+MD
Sbjct: 379  PLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLWDMLLRDAPVGIFTQSPNVMD 438

Query: 438  LVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALAL 497
            LVKCDG AL Y+N++  LG TP++ ++  I +WL E H  STGLS DSL +AGY GA AL
Sbjct: 439  LVKCDGVALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAAL 498

Query: 498  GDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEP-DEKDDGRKMHPRSSFKAFLEV 556
             +VVCGMAA++IS KD IFWFRS T  E++WGGAKHEP D  D+GRKMHPRSSFKAFLEV
Sbjct: 499  REVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLEV 558

Query: 557  VKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCD--LKIEGMKELEAV 614
            VK RS+PW+D EMDAIHSLQLILR + +D      + +SI     D   KI+G+ EL  V
Sbjct: 559  VKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANRNNVRSIVKAPPDDTKKIQGLLELRTV 618

Query: 615  TSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVK 674
            T+EMVRLIETAT P+LAVD+ G +NGWN K AELTGL V +AIG+  + LV   SI+ VK
Sbjct: 619  TNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVVVDSIEVVK 678

Query: 675  RMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQ 734
            R+L  ALQG EEQN++ ++K    +  + PI L+VN+C SRDL + V+GVCFV QD+T Q
Sbjct: 679  RILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDLTTQ 738

Query: 735  KTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLL 794
            K +MDK+TRI+GDY AIV+NP+ LIPPIF  ++ G C EWN AM K+TG +RE+VIDKLL
Sbjct: 739  KMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVIDKLL 798

Query: 795  LAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKK 854
            + EVF  +   CR+K+      L I++N  +SGQDPEK+ FGFF  +GKY E LL VNK+
Sbjct: 799  IGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTVNKR 858

Query: 855  LDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSR 914
            ++ EG +TG  CFL +AS ELQ AL VQ++SEQ A    K L Y  +++RNPL+G+ F+ 
Sbjct: 859  INAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQFTC 918

Query: 915  KMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVASI 974
             ++E +EL  EQ++LL ++  CQ QL KIL D+DL+SI   Y+++  VEF L E L   +
Sbjct: 919  NLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALNTVL 978

Query: 975  SQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFV-PNGGQLMVSS 1033
             Q +     K I I  +   +I    LYGD++RLQQVLAD+L+ ++ F  P  G +++  
Sbjct: 979  MQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIVLQV 1038

Query: 1034 SLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMN 1093
               K+ +G  + +A+LE RI H   G+PE L+ +MF    + S EG+ L I +KLVK M+
Sbjct: 1039 IPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFRHNPEVSREGLGLYICQKLVKTMS 1098

Query: 1094 GDVQYLREAGKSTFIVSVELAAAH 1117
            G VQYLREA  S+FI+ +E   A 
Sbjct: 1099 GTVQYLREADTSSFIILIEFPVAQ 1122


>sp|P34094|PHYB_SOLTU Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2
          Length = 1130

 Score = 1234 bits (3193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1114 (53%), Positives = 809/1114 (72%), Gaps = 26/1114 (2%)

Query: 10   SSNTGKSRHSARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGGDQQPRSDRV 66
            +SN       ++ IAQ T DA+LHA FE SG S   FDYS SV+ ++      Q   +R 
Sbjct: 22   TSNVNYKDSISKAIAQYTADARLHAVFEQSGESGKFFDYSQSVKTTT------QSVPERQ 75

Query: 67   TTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIG 126
             TAYL  IQ+G  IQPFGC++A+DE +F+VIAYSENA E+L++   +VPS+    +L IG
Sbjct: 76   ITAYLTKIQRGGHIQPFGCMIAVDEASFRVIAYSENACEMLSLTPQSVPSLEKCEILTIG 135

Query: 127  SDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVK 186
            +D++T+FT  S+  L++A G  E++LLNPI +H K SGKPFYAI+HRV   ++ID EP +
Sbjct: 136  TDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFYAILHRVDVGIVIDLEPAR 195

Query: 187  PYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHE 246
              +  ++ AGA+QS KLA +AI+ LQSLP G ++ LCDT+++ V ELTGYDRVM YKFHE
Sbjct: 196  TEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHE 255

Query: 247  DDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKL 306
            D+HGEVV+E  +S LEPY+GLHYPATDIPQA+RFLF +N+VRMIVDC A  V+V QDE L
Sbjct: 256  DEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVTQDESL 315

Query: 307  PFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEE----GDNTLPQKRKRLW 362
               L L GSTLRAPH CH QYM NM SIASL +AV++N  +EE    G N++     RLW
Sbjct: 316  MQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGGRNSM-----RLW 370

Query: 363  GLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMR 422
            GLVV H+T+ R +PFPLRYACEFL Q F + +N EL+L  Q+ EK++LRTQTLLCDML+R
Sbjct: 371  GLVVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLR 430

Query: 423  DAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLS 482
            D+P GIVTQSP+IMDLVKCDGAAL Y+ K + LGVTP + Q+ DIV WL  YH DSTGLS
Sbjct: 431  DSPPGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAYHGDSTGLS 490

Query: 483  ADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGR 542
             DSL DAGY GA +LGD VCGMA   I+ KD +FWFRS TA E++WGGAKH P++KDDG+
Sbjct: 491  TDSLPDAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQ 550

Query: 543  KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSI-HSKLC 601
            +MHPRSSFKAFLEVVK+RS PW++ EMDAIHSLQLILR++FKD      ++K+I H+ L 
Sbjct: 551  RMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEA--SNSKAIVHAHLG 608

Query: 602  DLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHF 661
            +++++G+ EL +V  EMVRLIETAT PI AVDV+G +NGWN K+AELTG+SV++A+GK  
Sbjct: 609  EMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTGVSVEEAMGKSL 668

Query: 662  L-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDN 720
            +  LV   S +T +++LY AL+G+E++N++ +++T G++  +  + ++VNACAS+D  +N
Sbjct: 669  VHDLVYKESQETAEKLLYNALRGEEDKNVEIKLRTFGAEQLEKAVFVVVNACASKDYTNN 728

Query: 721  VVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVK 780
            +VGVCFV QD+T +K VMDKF  I+GDYKAIV +PNPLIPPIF SDE   C EWN AM K
Sbjct: 729  IVGVCFVGQDVTGEKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEK 788

Query: 781  LTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFAR 840
            LTGW R E++ K+L+ E+FG+   CCRLK  +A     IVL+ A+ GQD +K PF FF R
Sbjct: 789  LTGWSRGEIVGKMLVGEIFGS---CCRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFFDR 845

Query: 841  NGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTK 900
            NGKY + LL  NK+++ EG   G FCF+Q+AS ELQQAL VQR  E+    ++K LAY  
Sbjct: 846  NGKYVQALLTANKRVNMEGDTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELAYIC 905

Query: 901  RQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLE 960
            ++I++PL+GI F+  ++E T L   QK+ L TSA C+RQ+ KI+ D DL++I DG L LE
Sbjct: 906  QEIKSPLNGIRFTNSLLEATNLTENQKQYLETSAACERQMSKIIRDIDLENIEDGSLTLE 965

Query: 961  MVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISI 1020
              +F L  V+ A +SQVM+    KG++++ +  E+I + T++GD +R+QQVLADFL   +
Sbjct: 966  KEDFFLGSVIDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMV 1025

Query: 1021 NFVPN-GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEG 1079
             + P+  G + +    +   +   V + ++ELRI   G G+P  L+  MF S    ++EG
Sbjct: 1026 RYAPSPDGWVEIQLRPSMMPISDGVTVVHIELRIICPGEGLPPELVQDMFHSSRWVTQEG 1085

Query: 1080 ISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
            + L + RK++KLMNG++QY+RE+ +  F++ ++L
Sbjct: 1086 LGLSMCRKMLKLMNGEIQYIRESERCYFLIILDL 1119


>sp|Q9ZS62|PHYB1_SOLLC Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1
          Length = 1131

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1123 (53%), Positives = 805/1123 (71%), Gaps = 27/1123 (2%)

Query: 2    SSSRPAQSS--SNTGKSRHSARVIAQTTIDAKLHADFETSG---TSFDYSNSVRVSSTAG 56
            SS   AQSS  SN       ++ IAQ T DA+LHA FE SG    SFDYS SV+ ++   
Sbjct: 14   SSQGQAQSSGTSNMNYKDSISKAIAQYTADARLHAVFEQSGESGKSFDYSQSVKTTT--- 70

Query: 57   GDQQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPS 116
               Q   +R  TAYL  IQ+G  IQPFGC++A+DE +F++IAYSENA E+L++   +VPS
Sbjct: 71   ---QSVPERQITAYLTKIQRGGHIQPFGCMIAVDEASFRIIAYSENACEMLSLTPQSVPS 127

Query: 117  VGDHPVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTG 176
            +    +L +G+D++T+FT  S+  L++A G  E++LLNPI +H K SGKPFYAI+HRV  
Sbjct: 128  LDKSEILTVGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFYAILHRVDV 187

Query: 177  SLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGY 236
             ++ID EP +  +  ++ AGA+QS KLA +AI+ LQSLP G ++ LCDT+++ V ELTGY
Sbjct: 188  GIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGY 247

Query: 237  DRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAR 296
            DRVM YKFHED+HGEVV+E  +S LEPY+GLHYPATDIPQA+RFLF +N+VRMIVDC A 
Sbjct: 248  DRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHAT 307

Query: 297  HVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEE----GDN 352
             V+V QDE L   L L GSTLRAPH CH QYM NM SIASL +AV++N  +EE    G N
Sbjct: 308  PVRVTQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGGRN 367

Query: 353  TLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRT 412
            ++     RLWGLVV H+T+ R +PFPLRYACEFL Q F + +N EL+L  Q+ EK++LRT
Sbjct: 368  SM-----RLWGLVVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRT 422

Query: 413  QTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLS 472
            QTLLCDML+RD+P GIVTQSP+IMDLVKCDGAAL Y+ K + LGVTP + Q+ DIV WL 
Sbjct: 423  QTLLCDMLLRDSPPGIVTQSPSIMDLVKCDGAALYYQRKYYPLGVTPTEAQIKDIVEWLL 482

Query: 473  EYHMDSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAK 532
             YH DSTGLS DSL DAGY GA +LGD VCGMA   I+ KD +FWFRS TA E++WGGAK
Sbjct: 483  AYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAK 542

Query: 533  HEPDEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLD 592
            H P++KDDG++MHPRSSFKAFLEVVK+RS PW++ EMDAIHSLQLILR++FKD      +
Sbjct: 543  HHPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEA--SN 600

Query: 593  TKSIHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLS 652
            +K+I   L +++++G+ EL +V  EMVRLIETAT PI  VDV+G +NGWN K+ ELTGLS
Sbjct: 601  SKAIVHALGEMELQGIDELSSVAREMVRLIETATAPIFGVDVNGRINGWNEKVVELTGLS 660

Query: 653  VDKAIGKHFL-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNA 711
             ++A GK  +  L+   S ++ +++LY AL+G E +N++ +++T G++  +  + L+VNA
Sbjct: 661  AEEAKGKSLVHDLLYKESQESAEKLLYNALRGVEGKNVEIKLRTFGAEQVEKAVFLVVNA 720

Query: 712  CASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWC 771
            C+SRD  +++VGV FV QD+T +K VMDKF  I+GDYKAIV +PNPLIPPIF SDE   C
Sbjct: 721  CSSRDYTNSIVGVSFVGQDVTGEKIVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTSC 780

Query: 772  CEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPE 831
             EWN AM KL+GW REE++ K+L+ E+FG+   CCRLK  +A     IVL+ A+ GQD +
Sbjct: 781  SEWNTAMEKLSGWSREEIVGKMLVGEIFGS---CCRLKGPDAMTKFMIVLHNAIGGQDTD 837

Query: 832  KVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALK 891
            K PF FF RNGKY + LL  NK+++ EG   G FCF+Q+AS ELQQAL VQR  E+    
Sbjct: 838  KFPFSFFDRNGKYVQALLTANKRVNMEGDTIGAFCFIQIASPELQQALRVQRQQEKKCYS 897

Query: 892  RLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDS 951
            ++K LAY  +++++PL+GI F+  ++E T L   QK+ L TSA C+RQ+ KI+ D DL++
Sbjct: 898  QMKELAYICQEVKSPLNGIRFTNSLLEATNLTEYQKQYLETSAACERQMSKIIRDVDLEN 957

Query: 952  IIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQV 1011
            I DG L LE  +F L  V+ A +SQVM+    KG++++ +  E+I + T++GD +R+QQV
Sbjct: 958  IEDGSLTLEKEDFFLGSVIDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQV 1017

Query: 1012 LADFLSISINFVPN-GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFG 1070
            LADFL   + + P+  G + +    +   +     + ++ELRI   G G+P  L+  MF 
Sbjct: 1018 LADFLLNMVRYAPSPDGWVEIQLRPSMMPISDGATVVHIELRIICPGEGLPPELVQDMFH 1077

Query: 1071 SEGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
            S    ++EG+ L + RK++KLMNG++QY+RE+ +  F++ ++L
Sbjct: 1078 SSRWVTQEGLGLSMCRKMLKLMNGEIQYIRESERCYFMIILDL 1120


>sp|P29130|PHYB_TOBAC Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2
          Length = 1132

 Score = 1217 bits (3149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1114 (53%), Positives = 799/1114 (71%), Gaps = 19/1114 (1%)

Query: 7    AQSS--SNTGKSRHSARVIAQTTIDAKLHADFETSG---TSFDYSNSVRVSSTAGGDQQP 61
            AQSS  SN       ++ IAQ T DA+LHA FE SG    SFDYS S++ ++     Q  
Sbjct: 20   AQSSGTSNVNYKDSISKAIAQYTADARLHAVFEQSGESGKSFDYSQSIKTTT-----QSV 74

Query: 62   RSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHP 121
              ++  TAYL  IQ+G  IQPFGC++A+DE +F+VIAYSENA E+L++   +VPS+    
Sbjct: 75   VPEQQITAYLTKIQRGGHIQPFGCMIAVDEASFRVIAYSENACEMLSLTPQSVPSLERPE 134

Query: 122  VLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIID 181
            +L +G+D++T+FT  S+  L++A G  E++LLNPI +H K SGKPFYAI+HRV   ++ID
Sbjct: 135  ILTVGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFYAILHRVDVGIVID 194

Query: 182  FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMA 241
             EP +  +  ++ AGA+QS KLA +AI+ LQSLP G ++ LCDT+++ V ELTGYDRVM 
Sbjct: 195  LEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDVKLLCDTVVESVRELTGYDRVMV 254

Query: 242  YKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVL 301
            YKFHED+HGEVV+E     LEPY+GLHYPATDIPQA+RFLF +N+VRMIVDC A  V+V+
Sbjct: 255  YKFHEDEHGEVVAESKIPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVV 314

Query: 302  QDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRL 361
            QDE L   L L GSTLRAPH CH QYM NM SIASL +AV++N  +EE      +   RL
Sbjct: 315  QDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGG--RSSMRL 372

Query: 362  WGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLM 421
            WGLVV H+T+ R +PFPLRYACEFL Q F + +N EL+L  Q+ EK++LRTQTLLCDML+
Sbjct: 373  WGLVVGHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLL 432

Query: 422  RDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGL 481
            RD+P GIV QSP+IMDLVKCDGAAL  + K + LGVTP + Q+ DIV WL  YH DSTGL
Sbjct: 433  RDSPTGIVIQSPSIMDLVKCDGAALYCQGKYYPLGVTPTEAQIKDIVEWLLTYHGDSTGL 492

Query: 482  SADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDG 541
            S DSL DAGY GA  LGD VCGMA   I+ KD +FWFRS TA E++WGGAKH P++KDDG
Sbjct: 493  STDSLADAGYPGAALLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDG 552

Query: 542  RKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLC 601
            ++MHPRSSFKAFLEVVK+RSLPW++ EMDAIHSL LILR++FKD    +     +H++L 
Sbjct: 553  QRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSL-LILRDSFKDAEASN-SKAVVHAQLG 610

Query: 602  DLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHF 661
            +++++G+ EL +V  EMVRLIETAT PI AVDV+G +NGWN K+AELT LSV++A+GK  
Sbjct: 611  EMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTDLSVEEAMGKSL 670

Query: 662  L-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDN 720
            +  LV   S +T +++L+ AL+G+E++N++ +++T G +     + ++VNAC+S+D  +N
Sbjct: 671  VHDLVHKESQETAEKLLFNALRGEEDKNVEIKLRTFGPEQLKKAVFVVVNACSSKDYTNN 730

Query: 721  VVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVK 780
            +VGVCFV QD+T QK VMDKF  I+GDYKAIV +PNPLIPPIF SDE   C EWN AM K
Sbjct: 731  IVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEK 790

Query: 781  LTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFAR 840
            LTGW R E+I K+L+ E+FG+   CCRLK  +A     IVL+ A+  QD +K PF FF R
Sbjct: 791  LTGWSRGEIIGKMLVGEIFGS---CCRLKGPDAMTKFMIVLHNAIGVQDTDKFPFSFFDR 847

Query: 841  NGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTK 900
            NGKY + LL  NK+++ EG + G FCF+Q+AS ELQQAL VQR  E+    ++K LAY  
Sbjct: 848  NGKYVQALLTANKRVNMEGQIIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELAYLC 907

Query: 901  RQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLE 960
            ++I++PL+GI F+  ++E T+L   QK+ L TSA C+RQ+ KI+ D DL++I DG L LE
Sbjct: 908  QEIKSPLNGIRFTNSLLEATDLTENQKQYLETSAACERQMSKIIRDVDLENIEDGSLTLE 967

Query: 961  MVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISI 1020
              EF L  V+ A +SQVM+    + ++++ +  E+I + T++GD +R+QQVLADFL   +
Sbjct: 968  KEEFFLGSVIDAVVSQVMLLLRERSVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMV 1027

Query: 1021 NFVPN-GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEG 1079
             + P+  G + +       Q+   V + ++E RI   G G+P  L+  MF S    ++EG
Sbjct: 1028 RYAPSPDGWVEIQLQPNMKQISDEVTVVHIEFRIVCPGEGLPPELVQDMFHSSRWVTKEG 1087

Query: 1080 ISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
            + L + RK++KLMNGD+QY+RE+ +  F++ ++L
Sbjct: 1088 LGLSMCRKILKLMNGDIQYIRESERCYFLIILDL 1121


>sp|A2XFW2|PHYB_ORYSI Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2
          Length = 1171

 Score = 1202 bits (3109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1113 (53%), Positives = 786/1113 (70%), Gaps = 31/1113 (2%)

Query: 20   ARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQK 76
            ++ +AQ T+DA+LHA FE SG S   FDY+ S+R S T   +QQ        AYL  IQ+
Sbjct: 59   SKAVAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQ------IAAYLSRIQR 112

Query: 77   GKLIQPFGCLLAL-DEKTFKVIAYSENAPELLTMV-NHAVPSVGDH---PVLGIGSDIKT 131
            G  IQPFGC LA+ D+ +F+++AYSEN  +LL +  +H+VPS+      P + +G+D + 
Sbjct: 113  GGHIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARL 172

Query: 132  IFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVP 191
            +F   SA  L++A    E+SLLNP+ +H + S KPFYAI+HR+   ++ID EP +  +  
Sbjct: 173  LFAPSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPA 232

Query: 192  MTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGE 251
            ++ AGA+QS KLA +AI+RLQ+LP G ++ LCDT+++ V ELTGYDRVM Y+FHED+HGE
Sbjct: 233  LSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGE 292

Query: 252  VVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLT 311
            VV+E  ++ LEPY+GLHYPATDIPQA+RFLF +N+VRMI DC A  V+V+QD  L   L 
Sbjct: 293  VVAESRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLC 352

Query: 312  LCGSTLRAPHSCHLQYMENMNSIASLVMAVVV----NDEEEEGDNTLPQKRKRLWGLVVC 367
            L GSTLR+PH CH QYM NM SIASLVMAV++    +D+      ++P   K LWGLVVC
Sbjct: 353  LVGSTLRSPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMK-LWGLVVC 411

Query: 368  HNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLG 427
            H+T+PR +PFPLRYACEFL Q F + +N EL+L +Q+ EK+ILRTQTLLCDML+RD+P G
Sbjct: 412  HHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTG 471

Query: 428  IVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLY 487
            IVTQSP+IMDLVKCDGAAL Y  K + LGVTP + Q+ DI+ WL+  H DSTGLS DSL 
Sbjct: 472  IVTQSPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLA 531

Query: 488  DAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPR 547
            DAGY GA ALGD V GMA   I+P D +FWFRS TA E++WGGAKH P++KDDG++MHPR
Sbjct: 532  DAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPR 591

Query: 548  SSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSI---HSKLCDLK 604
            SSFKAFLEVVK+RSLPW++ EMDAIHSLQLILR++F+D      ++K+I     +L +L+
Sbjct: 592  SSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELE 651

Query: 605  IEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLT- 663
            + G+ EL +V  EMVRLIETATVPI AVD DG +NGWN K+AELTGLSV++A+GK  +  
Sbjct: 652  LRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVND 711

Query: 664  LVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVG 723
            L+   S +TV ++L  AL+G E++N++ ++KT G + +  PI +IVNAC+SRD   N+VG
Sbjct: 712  LIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVG 771

Query: 724  VCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTG 783
            VCFV QD+T QK VMDKF  I+GDYKAIV NPNPLIPPIF SDE   C EWN AM KLTG
Sbjct: 772  VCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTG 831

Query: 784  WKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGK 843
            W R EV+ KLL+ EVFG    CCRLK  +A     IVL+ A+ GQD EK PF FF +NGK
Sbjct: 832  WSRGEVVGKLLVGEVFGN---CCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGK 888

Query: 844  YAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQI 903
            Y + LL  N +   +G   G FCFLQ+AS ELQQA  +QR  E+    R+K LAY  ++I
Sbjct: 889  YVQALLTANTRSRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEI 948

Query: 904  RNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVE 963
            +NPL+GI F+  ++E T+L  +Q++ L TS  C++Q+ KI+ D+ L SI DG L LE  E
Sbjct: 949  KNPLNGIRFTNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGE 1008

Query: 964  FTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFV 1023
            F+L  V+ A +SQVM++   + ++++ +  ++I   + YGD  R+QQVL DFL   + F 
Sbjct: 1009 FSLGSVMNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFA 1068

Query: 1024 P--NGG-QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGI 1080
            P  NG  ++ V  ++ ++  G    L     R    G G+P  ++  MF +   T++EGI
Sbjct: 1069 PAENGWVEIQVRPNIKQNSDGTDTML--FPFRFACPGEGLPPEIVQDMFSNSRWTTQEGI 1126

Query: 1081 SLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
             L I RK++KLM G+VQY+RE+ +S F + +EL
Sbjct: 1127 GLSICRKILKLMGGEVQYIRESERSFFHIVLEL 1159


>sp|Q10MG9|PHYB_ORYSJ Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1
          Length = 1171

 Score = 1200 bits (3105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1113 (53%), Positives = 786/1113 (70%), Gaps = 31/1113 (2%)

Query: 20   ARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQK 76
            ++ +AQ T+DA+LHA FE SG S   FDY+ S+R S T   +QQ        AYL  IQ+
Sbjct: 59   SKAVAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQ------IAAYLSRIQR 112

Query: 77   GKLIQPFGCLLAL-DEKTFKVIAYSENAPELLTMV-NHAVPSVGDH---PVLGIGSDIKT 131
            G  IQPFGC LA+ D+ +F+++AYSEN  +LL +  +H+VPS+      P + +G+D + 
Sbjct: 113  GGHIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARL 172

Query: 132  IFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVP 191
            +F   SA  L++A    E+SLLNP+ +H + S KPFYAI+HR+   ++ID EP +  +  
Sbjct: 173  LFAPSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPA 232

Query: 192  MTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGE 251
            ++ AGA+QS KLA +AI+RLQ+LP G ++ LCDT+++ V ELTGYDRVM Y+FHED+HGE
Sbjct: 233  LSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGE 292

Query: 252  VVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLT 311
            VV+E  ++ LEPY+GLHYPATDIPQA+RFLF +N+VRMI DC A  V+V+QD  L   L 
Sbjct: 293  VVAESRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLC 352

Query: 312  LCGSTLRAPHSCHLQYMENMNSIASLVMAVVV----NDEEEEGDNTLPQKRKRLWGLVVC 367
            L GSTLR+PH CH QYM NM SIASLVMAV++    +D+      ++P   K LWGLVVC
Sbjct: 353  LVGSTLRSPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMK-LWGLVVC 411

Query: 368  HNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLG 427
            H+T+PR +PFPLRYACEFL Q F + +N EL+L +Q+ EK+ILRTQTLLCDML+RD+P G
Sbjct: 412  HHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTG 471

Query: 428  IVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLY 487
            IVTQSP+IMDLVKCDGAAL Y  K + LGVTP + Q+ DI+ WL+  H DSTGLS DSL 
Sbjct: 472  IVTQSPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLA 531

Query: 488  DAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPR 547
            DAGY GA ALGD V GMA   I+P D +FWFRS TA E++WGGAKH P++KDDG++MHPR
Sbjct: 532  DAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPR 591

Query: 548  SSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSI---HSKLCDLK 604
            SSFKAFLEVVK+RSLPW++ EMDAIHSLQLILR++F+D      ++K+I     +L +L+
Sbjct: 592  SSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELE 651

Query: 605  IEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLT- 663
            + G+ EL +V  EMVRLIETATVPI AVD DG +NGWN K+AELTGLSV++A+GK  +  
Sbjct: 652  LRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVND 711

Query: 664  LVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVG 723
            L+   S +TV ++L  AL+G E++N++ ++KT G + +  PI +IVNAC+SRD   N+VG
Sbjct: 712  LIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVG 771

Query: 724  VCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTG 783
            VCFV QD+T QK VMDKF  I+GDYKAIV NPNPLIPPIF SDE   C EWN AM KLTG
Sbjct: 772  VCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTG 831

Query: 784  WKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGK 843
            W R EV+ KLL+ EVFG    CCRLK  +A     IVL+ A+ GQD EK PF FF +NGK
Sbjct: 832  WSRGEVVGKLLVGEVFGN---CCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGK 888

Query: 844  YAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQI 903
            Y + LL  N +   +G   G FCFLQ+AS ELQQA  +QR  E+    R+K LAY  ++I
Sbjct: 889  YVQALLTANTRSRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEI 948

Query: 904  RNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVE 963
            +NPL+GI F+  ++E T+L  +Q++ L TS  C++Q+ KI+ D+ L SI DG L LE  E
Sbjct: 949  KNPLNGIRFTNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGE 1008

Query: 964  FTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFV 1023
            F+L  V+ A +SQVM++   + ++++ +  ++I   + YGD  R+QQVL DFL   + F 
Sbjct: 1009 FSLGSVMNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFA 1068

Query: 1024 P--NGG-QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGI 1080
            P  NG  ++ V  ++ ++  G    L     R    G G+P  ++  MF +   T++EGI
Sbjct: 1069 PAENGWVEIQVRPNIKQNSDGTDTML--FLFRFACPGEGLPPEIVQDMFSNSRWTTQEGI 1126

Query: 1081 SLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
             L I RK++KLM G+VQY+RE+ +S F + +EL
Sbjct: 1127 GLSICRKILKLMGGEVQYIRESERSFFHIVLEL 1159


>sp|P93527|PHYB_SORBI Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2
          Length = 1178

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/1111 (52%), Positives = 790/1111 (71%), Gaps = 29/1111 (2%)

Query: 20   ARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQK 76
            ++ +AQ T+DA+LHA FE SG S   FDYS S+R   T      P S++   AYL  IQ+
Sbjct: 68   SKAVAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPT------PSSEQQIAAYLSRIQR 121

Query: 77   GKLIQPFGCLLAL-DEKTFKVIAYSENAPELLTMV-NHAVPSVGDH--PVLGIGSDIKTI 132
            G  IQPFGC LA+ D+ +F+++A+SENA +LL +  +H+VPS+     P + +G+D + +
Sbjct: 122  GGHIQPFGCTLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLL 181

Query: 133  FTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPM 192
            F+  SA  L++A    E+SLLNP+ +H + S KPFYAI+HR+   ++ID EP +  +  +
Sbjct: 182  FSPSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPAL 241

Query: 193  TAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEV 252
            + AGA+QS KLA +AI+RLQ+LP G ++ LCDT+++ V ELTGYDRVM Y+FHED+HGEV
Sbjct: 242  SIAGAVQSQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEV 301

Query: 253  VSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTL 312
            V+E  +  LEPYLGLHYPATDIPQA+RFLF +N+VRMI DC A  V+V+QD  +   L L
Sbjct: 302  VAESRRDNLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCL 361

Query: 313  CGSTLRAPHSCHLQYMENMNSIASLVMAVVVN---DEEEEGDNTLPQKRKRLWGLVVCHN 369
             GSTLRAPH CH QYM NM SIASLVMAV+++   D+E+ G   +    K LWGLVVCH+
Sbjct: 362  VGSTLRAPHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMK-LWGLVVCHH 420

Query: 370  TTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIV 429
            T+PR +PFPLRYACEFL Q F + +N EL+L +Q+ EK+ILRTQTLLCDML+RD+P GIV
Sbjct: 421  TSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIV 480

Query: 430  TQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDA 489
            TQSP+IMDLVKCDGAAL Y  K + LGVTP + Q+ DI+ WL+  H DSTGLS DSL DA
Sbjct: 481  TQSPSIMDLVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADA 540

Query: 490  GYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSS 549
            GYLGA ALGD VCGMA   I+P D +FWFRS TA E++WGGAKH P++KDDG++MHPRSS
Sbjct: 541  GYLGAAALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSS 600

Query: 550  FKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSI---HSKLCDLKIE 606
            FKAFLEVVK+RSLPW++ EMDAIHSLQLILR++F+D      ++K+I     +L +L++ 
Sbjct: 601  FKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELR 660

Query: 607  GMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLT-LV 665
            G+ EL +V  EMVRLIETATVPI AVD DG +NGWN KIAELTGLSV++A+GK  +  L+
Sbjct: 661  GINELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLI 720

Query: 666  EDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVC 725
               S + V+++L  AL+G+E++N++ ++KT GS+ ++  I +IVNAC+SRD   N+VGVC
Sbjct: 721  FKESEEIVEKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVC 780

Query: 726  FVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWK 785
            FV QD+T QK VMDKF  I+GDYKAIV NPNPLIPPIF SDE   C EWN AM KLTGW 
Sbjct: 781  FVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWS 840

Query: 786  REEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYA 845
            R EV+ K L+ EVFG+    CRLK  +A     +V++ A+ GQD EK PF FF +NGKY 
Sbjct: 841  RGEVVGKFLIGEVFGS---FCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYV 897

Query: 846  ECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRN 905
            + LL  N +   +G   G FCFLQ+AS E+QQA  +QR  E+    R+K LAY  ++I+N
Sbjct: 898  QALLTANTRSKMDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKN 957

Query: 906  PLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFT 965
            PLSGI F+  +++ T+L  +Q++ L T + C+ Q+ KI+ D+ L SI DG L LE  EF+
Sbjct: 958  PLSGIRFTNSLLQMTDLNDDQRQFLETCSACEEQMSKIVKDATLQSIEDGSLVLEKSEFS 1017

Query: 966  LNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVP- 1024
              +V+ A +SQ M+    + ++++ +  ++I   + YGD  R+QQVLADFL   +   P 
Sbjct: 1018 FGDVMNAVVSQAMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPS 1077

Query: 1025 -NGG-QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISL 1082
             NG  ++ V  ++ ++  G    L     R T+ G G+P  ++  MF +   +++EG+ L
Sbjct: 1078 ENGWVEIQVRPNVKQNSDGTDTEL--FIFRFTYPGEGLPADIVQDMFSNSQWSTQEGVGL 1135

Query: 1083 LISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
               RK++KLM G+VQY+RE+ +S F++ +EL
Sbjct: 1136 STCRKILKLMGGEVQYIRESERSFFLIVLEL 1166


>sp|P14713|PHYB_ARATH Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1
          Length = 1172

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1126 (51%), Positives = 790/1126 (70%), Gaps = 30/1126 (2%)

Query: 2    SSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSG---TSFDYSNSVRVSSTAGGD 58
            S ++  +  SNT      ++ I Q T+DA+LHA FE SG    SFDYS S++  +T  G 
Sbjct: 40   SGTKSLRPRSNT---ESMSKAIQQYTVDARLHAVFEQSGESGKSFDYSQSLK--TTTYGS 94

Query: 59   QQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVG 118
              P  ++  TAYL  IQ+G  IQPFGC++A+DE +F++I YSENA E+L ++  +VP++ 
Sbjct: 95   SVP--EQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGIMPQSVPTLE 152

Query: 119  DHPVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSL 178
               +L +G+D++++FT+ S+  L++A    E++LLNP+ +H K +GKPFYAI+HR+   +
Sbjct: 153  KPEILAMGTDVRSLFTSSSSILLERAFVAREITLLNPVWIHSKNTGKPFYAILHRIDVGV 212

Query: 179  IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDR 238
            +ID EP +  +  ++ AGA+QS KLA +AI++LQ+LP G ++ LCDT+++ V +LTGYDR
Sbjct: 213  VIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRDLTGYDR 272

Query: 239  VMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHV 298
            VM YKFHED+HGEVV+E  +  LEPY+GLHYPATDIPQA+RFLF +N+VRMIVDC A  V
Sbjct: 273  VMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNATPV 332

Query: 299  KVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKR 358
             V+QD++L   + L GSTLRAPH CH QYM NM SIASL MAV++N  E++G N    + 
Sbjct: 333  LVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEDDGSNVASGRS 392

Query: 359  K-RLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLC 417
              RLWGLVVCH+T+ R +PFPLRYACEFL Q F + +N EL+L  Q+ EK +LRTQTLLC
Sbjct: 393  SMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLC 452

Query: 418  DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMD 477
            DML+RD+P GIVTQSP+IMDLVKCDGAA LY  K + LGV P++ Q+ D+V WL   H D
Sbjct: 453  DMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVVEWLLANHAD 512

Query: 478  STGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE 537
            STGLS DSL DAGY GA ALGD VCGMA   I+ +D +FWFRS TA E++WGGAKH P++
Sbjct: 513  STGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPED 572

Query: 538  KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIH 597
            KDDG++MHPRSSF+AFLEVVK+RS PW+  EMDAIHSLQLILR++FK+         +++
Sbjct: 573  KDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKE------SEAAMN 626

Query: 598  SKLCDLKI---------EGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAEL 648
            SK+ D  +         +G+ EL AV  EMVRLIETATVPI AVD  G +NGWN KIAEL
Sbjct: 627  SKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAEL 686

Query: 649  TGLSVDKAIGKHFLT-LVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITL 707
            TGLSV++A+GK  ++ L+   +  TV ++L  AL+G EE+N++ ++KT   ++    + +
Sbjct: 687  TGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQGKAVFV 746

Query: 708  IVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDE 767
            +VNAC+S+D  +N+VGVCFV QD+T QK VMDKF  I+GDYKAIV +PNPLIPPIF +DE
Sbjct: 747  VVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADE 806

Query: 768  FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG 827
               C EWN AM KLTGW R EVI K+++ EVFG+   CC LK  +A     IVL+ A+ G
Sbjct: 807  NTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGS---CCMLKGPDALTKFMIVLHNAIGG 863

Query: 828  QDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQ 887
            QD +K PF FF RNGK+ + LL  NK++  EG V G FCFLQ+ S ELQQAL VQR  + 
Sbjct: 864  QDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQDT 923

Query: 888  TALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDS 947
                + K LAY  + I+NPLSG+ F+  ++E T+L  +QK+LL TS  C++Q+ +I+ D 
Sbjct: 924  ECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVGDM 983

Query: 948  DLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIR 1007
            DL+SI DG   L+  EF L  V+ A +SQ M     +G++++ +  E+I S  ++GD IR
Sbjct: 984  DLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQIR 1043

Query: 1008 LQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQ 1067
            +QQ+LA+FL   I + P+   + +  S    Q+         E R+   G G+P  L+  
Sbjct: 1044 IQQLLAEFLLSIIRYAPSQEWVEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPELVRD 1103

Query: 1068 MFGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
            MF S   TS EG+ L + RK++KLMNG+VQY+RE+ +S F++ +EL
Sbjct: 1104 MFHSSRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1149


>sp|P42497|PHYD_ARATH Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2
          Length = 1164

 Score = 1189 bits (3075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1120 (52%), Positives = 781/1120 (69%), Gaps = 17/1120 (1%)

Query: 4    SRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSG---TSFDYSNSVRVSSTAGGDQQ 60
            S+  Q  ++ G +  + + I Q T+DA+LHA FE SG    SFDYS S++   TA  D  
Sbjct: 41   SQNQQPQNHGGGTESTNKAIQQYTVDARLHAVFEQSGESGKSFDYSQSLK---TAPYDSS 97

Query: 61   PRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDH 120
                ++T AYL  IQ+G   QPFGCL+A++E TF +I YSENA E+L +++ +VPS+ D 
Sbjct: 98   VPEQQIT-AYLSRIQRGGYTQPFGCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDK 156

Query: 121  P-VLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLI 179
              VL IG+D++++F + S   L++A    E++LLNPI +H   +GKPFYAI+HRV   ++
Sbjct: 157  SEVLTIGTDLRSLFKSSSYLLLERAFVAREITLLNPIWIHSNNTGKPFYAILHRVDVGIL 216

Query: 180  IDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRV 239
            ID EP +  +  ++ AGA+QS KLA +AI+ LQSLPSG ++ LCDT+++ V +LTGYDRV
Sbjct: 217  IDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRV 276

Query: 240  MAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVK 299
            M YKFHED+HGEVV+E  ++ LEPY+GLHYPATDIPQA+RFLF +N+VRMIVDC A  V+
Sbjct: 277  MVYKFHEDEHGEVVAESKRNDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVR 336

Query: 300  VLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGD--NTLPQK 357
            V+QD++L   + L GSTLRAPH CH QYM NM SIASL MAV++N  EE+G+  NT  + 
Sbjct: 337  VVQDDRLTQFICLVGSTLRAPHGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRN 396

Query: 358  RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLC 417
              RLWGLVVCH+T+ R +PFPLRYACEFL Q F + +N EL+L  Q+ EK +LR QTLLC
Sbjct: 397  SMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLC 456

Query: 418  DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMD 477
            DML+RD+P GIVTQ P+IMDLVKC+GAA LY+ K + LGVTP D Q++DIV WL   H D
Sbjct: 457  DMLLRDSPAGIVTQRPSIMDLVKCNGAAFLYQGKYYPLGVTPTDSQINDIVEWLVANHSD 516

Query: 478  STGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE 537
            STGLS DSL DAGY  A ALGD VCGMA   I+ +D +FWFRS T  E++WGGAKH P++
Sbjct: 517  STGLSTDSLGDAGYPRAAALGDAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPED 576

Query: 538  KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTK--- 594
            KDDG++M+PRSSF+ FLEVVK+R  PW+  EMDAIHSLQLILR++FK+   +D       
Sbjct: 577  KDDGQRMNPRSSFQTFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAG 636

Query: 595  SIHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVD 654
            ++     D+  +GM+E+ AV  EMVRLIETATVPI AVD+DG +NGWN KIAELTGLSV+
Sbjct: 637  AVQPHGDDMVQQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVE 696

Query: 655  KAIGKHFL-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACA 713
             A+GK  +  L+     +TV R+L  AL+G E +N++ ++KT GS++    + ++VNAC+
Sbjct: 697  DAMGKSLVRELIYKEYKETVDRLLSCALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACS 756

Query: 714  SRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCE 773
            S+D  +N+VGVCFV QD+T  K VMDKF  I+GDYKAI+ +PNPLIPPIF +DE   C E
Sbjct: 757  SKDYLNNIVGVCFVGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLE 816

Query: 774  WNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKV 833
            WN AM KLTGW R EVI KLL+ EVFG+    CRLK  +A     IVL+ A+ GQD +K 
Sbjct: 817  WNTAMEKLTGWPRSEVIGKLLVREVFGSY---CRLKGPDALTKFMIVLHNAIGGQDTDKF 873

Query: 834  PFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRL 893
            PF FF R G++ + LL +NK++  +G + G FCFLQ+ S ELQQAL VQR  E     R 
Sbjct: 874  PFPFFDRKGEFIQALLTLNKRVSIDGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRR 933

Query: 894  KALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSII 953
            K LAY  + I+NPLSG+ F+  ++E  +L  +QK+LL TS  C++Q+ KI+ D D+ SI 
Sbjct: 934  KELAYIFQVIKNPLSGLRFTNSLLEDMDLNEDQKQLLETSVSCEKQISKIVGDMDVKSID 993

Query: 954  DGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLA 1013
            DG   LE  EF +  V  A +SQVM+    + ++++     ++ S  +YGD IRLQQVLA
Sbjct: 994  DGSFLLERTEFFIGNVTNAVVSQVMLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLA 1053

Query: 1014 DFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG 1073
            +FL   + + P  G + +    T +Q+        LE R+  AG G+P   +  MF S  
Sbjct: 1054 EFLLSIVRYAPMEGSVELHLCPTLNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHSSR 1113

Query: 1074 DTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
             TS EG+ L + RK++KLMNG VQY+RE  +S F++ +EL
Sbjct: 1114 WTSPEGLGLSVCRKILKLMNGGVQYIREFERSYFLIVIEL 1153


>sp|P14714|PHYC_ARATH Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1
          Length = 1111

 Score = 1184 bits (3062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1110 (51%), Positives = 786/1110 (70%), Gaps = 12/1110 (1%)

Query: 9    SSSNTGKSRHSARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTT 68
            S S + +SR ++RV +Q  +DAKLH +FE S   FDYS S+ ++  +   + P S    +
Sbjct: 6    SRSCSTRSRQNSRVSSQVLVDAKLHGNFEESERLFDYSASINLNMPSSSCEIPSS--AVS 63

Query: 69   AYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSD 128
             YL  IQ+G LIQPFGCL+ +DEK  KVIA+SEN  E+L ++ H VPS+     L IG+D
Sbjct: 64   TYLQKIQRGMLIQPFGCLIVVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTD 123

Query: 129  IKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPY 188
            +K++F +P  SAL+KA+ FGE+S+LNPI +HC++S KPFYAI+HR+   L+ID EPV P 
Sbjct: 124  VKSLFLSPGCSALEKAVDFGEISILNPITLHCRSSSKPFYAILHRIEEGLVIDLEPVSPD 183

Query: 189  EVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDD 248
            EVP+TAAGAL+SYKLAAK+I+RLQ+LPSG+M  LCD +++EV ELTGYDRVM YKFHED 
Sbjct: 184  EVPVTAAGALRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDG 243

Query: 249  HGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPF 308
            HGEV++E  +  +EPYLGLHY ATDIPQA+RFLFM+NKVRMI DC A  VKV+QD+ L  
Sbjct: 244  HGEVIAECCREDMEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQ 303

Query: 309  DLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCH 368
             ++L GSTLRAPH CH QYM NM S+ASLVM+V +N  + +  N   Q  + LWGLVVCH
Sbjct: 304  PISLSGSTLRAPHGCHAQYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCH 363

Query: 369  NTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGI 428
            + +PRFVPFPLRYACEFL QVF + +NKE E    + EK IL+TQ++LCDML R+AP+GI
Sbjct: 364  HASPRFVPFPLRYACEFLTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGI 423

Query: 429  VTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYD 488
            VTQSPNIMDLVKCDGAAL Y++ +W LGVTP + Q+ D++ W+ + H  +TG + +SL +
Sbjct: 424  VTQSPNIMDLVKCDGAALYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLME 483

Query: 489  AGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRS 548
            +GY  A  LG+ +CGMAAV IS KD +FWFRS TA +++WGGA+H+P+++ DG++MHPRS
Sbjct: 484  SGYPDASVLGESICGMAAVYISEKDFLFWFRSSTAKQIKWGGARHDPNDR-DGKRMHPRS 542

Query: 549  SFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGM 608
            SFKAF+E+V+ +S+PW D EMDAI+SLQLI++ + ++    +     +   L D +++ +
Sbjct: 543  SFKAFMEIVRWKSVPWDDMEMDAINSLQLIIKGSLQE----EHSKTVVDVPLVDNRVQKV 598

Query: 609  KELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDS 668
             EL  + +EMVRLI+TA VPI AVD  G++NGWN+K AE+TGL+V++AIGK    LVED 
Sbjct: 599  DELCVIVNEMVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSDLVEDD 658

Query: 669  SIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVA 728
            S++TVK ML LAL+G EE+  +  I+  G K    P+ L+VN C SRD+ +NV+GVCF+ 
Sbjct: 659  SVETVKNMLALALEGSEERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIG 718

Query: 729  QDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREE 788
            QD+T QKT+ + ++R++GDY  I+ +P+ LIPPIF ++E G C EWN AM KL+G KREE
Sbjct: 719  QDVTGQKTLTENYSRVKGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREE 778

Query: 789  VIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQ-DPEKVPFGFFARNGKYAEC 847
            V++K+LL EVF T+   C LK+ +    L I  N  +SGQ + EK+ FGF+ R+G + E 
Sbjct: 779  VVNKILLGEVFTTDDYGCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEA 838

Query: 848  LLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPL 907
            LL  NK+ D EG VTGV CFLQ+ S ELQ AL VQ++SE      L  LAY + ++++P 
Sbjct: 839  LLSANKRTDIEGKVTGVLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPE 898

Query: 908  SGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLN 967
              I F + ++  + L  +QKRLL TS  C+ QL K++ DSD++ I +GY++L+  EF L 
Sbjct: 899  KAISFLQDLLHSSGLSEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQ 958

Query: 968  EVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGG 1027
            E L A + QVM  S  + ++I  +  +++ S  LYGD++RLQQ+L++ L  SI F P   
Sbjct: 959  ESLEAVVKQVMELSIERKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPALR 1018

Query: 1028 QLMVSSSLTK--DQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGS-EGDTSEEGISLLI 1084
             L VS  +    + +G+ +    LE RI H   G+PE L+ +MF      TS EG+ L I
Sbjct: 1019 GLCVSFKVIARIEAIGKRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHI 1078

Query: 1085 SRKLVKLM-NGDVQYLREAGKSTFIVSVEL 1113
            ++KLVKLM  G ++YLRE+  S F++  E 
Sbjct: 1079 TQKLVKLMERGTLRYLRESEMSAFVILTEF 1108


>sp|P33529|PHY_MOUSC Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2
          Length = 1124

 Score = 1170 bits (3027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1102 (53%), Positives = 779/1102 (70%), Gaps = 15/1102 (1%)

Query: 23   IAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAG-GDQQPRSDRVTTAYLHHIQKGKLIQ 81
            + Q + DAKL   FE S +S   S     S TA     +P + +  TAYL  +Q+G +IQ
Sbjct: 23   VTQASADAKLSTAFEVSSSSGGDSFDYTKSVTASLNPTEPLAAKSVTAYLQRMQRGSIIQ 82

Query: 82   PFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHP-VLGIGSDIKTIFTAPSASA 140
             FGC++A++  TF++IAYSEN  E+L +   +VP+ GDH   +GIG+D++++ +  S S 
Sbjct: 83   SFGCMMAVEPGTFRIIAYSENVSEMLGVTPQSVPT-GDHQNAIGIGTDVRSLLSPSSVSV 141

Query: 141  LQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEV-PMTAAGALQ 199
            ++KA+   +VS++NPI V+   + K F+AI+H     L+ID EP+       M +AGA+Q
Sbjct: 142  VEKAVAANDVSMMNPIAVYSLATQKLFFAILHMNDVGLVIDLEPISSSSDSAMFSAGAVQ 201

Query: 200  SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
            S+KLAAKAI+RLQSLP G +  LCD +++EV ELTGYDRVMAYKFH+D+HGEVV+EI +S
Sbjct: 202  SHKLAAKAISRLQSLPGGDICGLCDVVVEEVRELTGYDRVMAYKFHDDEHGEVVAEIRRS 261

Query: 260  GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRA 319
             LEPYLGLHYPATDIPQA+RFLF+KN++RMI DC +  VKV+QD ++P +++L GST+R 
Sbjct: 262  DLEPYLGLHYPATDIPQASRFLFIKNRIRMICDCTSPQVKVVQDSRIPQEMSLAGSTMRG 321

Query: 320  PHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPL 379
             H CH QYM NM S ASLVM+V +ND  E        K ++LWGL+VCH++TPR +PFP+
Sbjct: 322  VHGCHTQYMMNMGSTASLVMSVTINDTNEIAGGP-GMKGRKLWGLIVCHHSTPRHIPFPI 380

Query: 380  RYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLV 439
            R ACEFL QVF + +N E+EL  Q  EK+ILRTQTLLCDML+RDAP+GIV+QSPN+MDLV
Sbjct: 381  RSACEFLMQVFGLQLNMEVELAAQHREKHILRTQTLLCDMLLRDAPMGIVSQSPNVMDLV 440

Query: 440  KCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALALGD 499
            KCDGAALL+  + W LG++P   Q+ DI +WL   H D+TGLS DSL DAGY  A  LG 
Sbjct: 441  KCDGAALLFGGRCWLLGISPTQEQVKDIATWLISSHTDTTGLSTDSLVDAGYPKARELGV 500

Query: 500  VVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEVVKT 559
             VCGMAA RI+  D +FWFR     EV+W GAK    E +DG +MHPRSSFKAFLEVVK 
Sbjct: 501  DVCGMAAARITENDFLFWFRGHAQKEVKWAGAKDGGSE-EDGSRMHPRSSFKAFLEVVKQ 559

Query: 560  RSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEAVTSEMV 619
            RSLPW+D EMDAIHSLQLILR +F+D+   + D K +H++L ++ ++GM+EL +V SEMV
Sbjct: 560  RSLPWEDVEMDAIHSLQLILRGSFQDIEDKE-DRKIVHARLKEMHLQGMEELSSVASEMV 618

Query: 620  RLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLT-LVEDSSIDTVKRMLY 678
            RLIETAT PILAVD  G VNGWN KI+ELTGLS+ + +GK  +  L   SS DTV+++LY
Sbjct: 619  RLIETATAPILAVDTAGCVNGWNFKISELTGLSIPEVMGKSLVKDLTHPSSKDTVEKLLY 678

Query: 679  LALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVM 738
            +AL G+EEQN++  +KT G +    P+ L+VNACASRD+ + VVGVCFVAQD+T +K V 
Sbjct: 679  MALNGEEEQNVEIRLKTWGMQQGKGPVILMVNACASRDVSEKVVGVCFVAQDVTGEKIVQ 738

Query: 739  DKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEV 798
            DKFTRI+GDY  IV++ N LIPPIFGSDE G+C EWNPAM +L+G KREE I K+L  E+
Sbjct: 739  DKFTRIQGDYTTIVRSHNSLIPPIFGSDESGFCVEWNPAMERLSGVKREEAIGKMLTREL 798

Query: 799  FGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDRE 858
            FG      RLKN +      IVLN AMS  D +K PF F+ R+GK  E LL  +K+ + E
Sbjct: 799  FG---GILRLKNVDGLTKFMIVLNAAMSSHDTDKFPFTFYDRSGKIVEVLLTTSKRCNSE 855

Query: 859  GAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMME 918
            G VTGVFCFL  AS ELQQAL VQ+ +E+ A  + K LAY +++I+NPL GI F+R  ME
Sbjct: 856  GVVTGVFCFLHTASSELQQALTVQKAAERVAEVKAKELAYIRQEIQNPLDGIHFARSFME 915

Query: 919  GTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVASISQVM 978
             T L  +QK+L+ TSA C++QL +IL D DL SI  GYL+LE  EF++  V+ + +SQ M
Sbjct: 916  HTVLSEDQKQLIETSATCEKQLRRILADMDLASIEKGYLELETGEFSMATVMNSVVSQGM 975

Query: 979  MKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKD 1038
            ++S  K +++  +T     S +++GD +RLQQVLADFL  ++ F P  G + +       
Sbjct: 976  IQSTQKNLQLYCDTPPDFKSLSVFGDQVRLQQVLADFLLNAVQFTPPSGWVEIKVEPVVK 1035

Query: 1039 QLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT---SEEGISLLISRKLVKLMNGD 1095
            +L   V +A ++ R++H G G+PE L+DQMF    D    S+EG+ L I RKLV+LMNG+
Sbjct: 1036 KLPGGVSVANVDFRVSHPGEGLPEDLIDQMF-DRADARVKSQEGLGLSICRKLVRLMNGE 1094

Query: 1096 VQYLREAGKSTFIVSVELAAAH 1117
            VQY RE  ++ F++ +EL  A 
Sbjct: 1095 VQYRREGERNFFLLQLELPLAQ 1116


>sp|P42499|PHYB_SOYBN Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1
          Length = 1156

 Score = 1095 bits (2832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1125 (49%), Positives = 756/1125 (67%), Gaps = 48/1125 (4%)

Query: 20   ARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQK 76
            ++ IAQ T D  +HA FE SG S   F+YS S+R++S +  +QQ       TAYL  IQ+
Sbjct: 39   SKAIAQYTEDG-VHAVFEQSGESGRSFNYSESIRIASESVPEQQ------ITAYLVKIQR 91

Query: 77   GKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDH---------------- 120
            G  IQPFG ++A+DE +F+++ YS+NA ++L +   +VPS+ D                 
Sbjct: 92   GGFIQPFGSMIAVDEPSFRILGYSDNARDMLGITPQSVPSLDDKNDAAFALGPQSVPSLD 151

Query: 121  ----PVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTG 176
                    +G+D++ +FT  SA  L+KA    E+SL+NPI +H +TSGKPFY I+HR+  
Sbjct: 152  DKNDAAFALGTDVRALFTHSSALLLEKAFSAREISLMNPIWIHSRTSGKPFYGILHRIDV 211

Query: 177  SLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGY 236
             ++ID EP +  +  ++ AGA+QS +   +AI++LQSLPS  ++ LCDT+++ V ELTGY
Sbjct: 212  GIVIDLEPARTEDPALSIAGAVQSQEALVRAISQLQSLPSADVKLLCDTVVESVRELTGY 271

Query: 237  DRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAR 296
            DRVM YKFHED+HGEVVSE  +  LEPY+GLHYPATDIPQA+RFLF +N+VRMIVDC A 
Sbjct: 272  DRVMVYKFHEDEHGEVVSESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHAS 331

Query: 297  HVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQ 356
             V+V+QDE L   L L GSTL APH CH QYM NM SIASLVMAV++N  +EEG     +
Sbjct: 332  AVRVVQDEALVQPLCLVGSTLGAPHGCHAQYMANMGSIASLVMAVIINGNDEEGVGG--R 389

Query: 357  KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLL 416
               RLWGLVVCH+T+ R +PFPLRYACEFL Q F + +N EL+L  Q LEK +LRTQTLL
Sbjct: 390  SSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLL 449

Query: 417  CDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHM 476
            CDML+RD+P GIVTQSP+IMDLVKCDGAAL ++   + LGVTP + Q+ DI+ WL  +H 
Sbjct: 450  CDMLLRDSPTGIVTQSPSIMDLVKCDGAALYFQGNYYPLGVTPTEAQIRDIIEWLLAFHG 509

Query: 477  DSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPD 536
            DSTGLS DSL DAGY G   LG    G     I+ KD +FWFRS TA E++WGGAK    
Sbjct: 510  DSTGLSTDSLGDAGYPGLPRLGMQFVGWQVAYITEKDFLFWFRSHTAKEIKWGGAKLILR 569

Query: 537  EKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSI 596
             +  G++MHP SSFKAFLEVVK+RSLPW++ EMDAIHSLQLILR++FKD    +     +
Sbjct: 570  TRMMGQRMHPLSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEHRN-SKAVV 628

Query: 597  HSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKA 656
               + + +++G+ EL +V  EMVRLIETAT PI AVDVDG VNGWN K++ELTGL V++A
Sbjct: 629  DPHVSEQELQGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWNAKVSELTGLPVEEA 688

Query: 657  IGKHFL-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASR 715
            +GK  +  LV   S +TV ++    L  +E++N++ +++T G +  +    L+VNAC+S+
Sbjct: 689  MGKSLVHDLVFKESEETVNKL----LSREEDKNVETKMRTFGKEHQNKAAFLVVNACSSK 744

Query: 716  DLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWN 775
               +NVVGVCFV Q++T QK VM KF  I+GDYKAIV +PNPLIPPIF SD+   C EWN
Sbjct: 745  HFTNNVVGVCFVGQNVTGQKIVMHKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWN 804

Query: 776  PAMVKLTGWKRE------EVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQD 829
             AM KL            +VI K+L+ EVFG+   CC+LK  ++     IVL+ A+ GQD
Sbjct: 805  TAMEKLDPSNENVTVGGVDVIGKMLVGEVFGS---CCQLKGSDSITKFMIVLHNALGGQD 861

Query: 830  PEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTA 889
             +K PF F  R+GKY +  L  NK+++ EG + G FCFLQ+ S ELQQAL  QR  E+  
Sbjct: 862  TDKFPFSFLDRHGKYVQTFLTANKRVNMEGQIIGAFCFLQIMSPELQQALKAQRQQEKEF 921

Query: 890  LKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDL 949
            L R+K LAY  + ++ PLSGI F+  ++E T L  EQK+ L TS  C++Q+ KI+ D DL
Sbjct: 922  LGRMKELAYICQGVKKPLSGIRFTNSLLEATSLTNEQKQFLETSVACEKQMLKIIRDVDL 981

Query: 950  DSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQ 1009
            +SI DG L+LE  EF L  V+ A +SQV++    + ++++ +  E+I +  +YGD +R+Q
Sbjct: 982  ESIEDGSLELEKGEFLLGNVINAVVSQVILLLRERNLQLIRDIPEEIKTLAVYGDQLRIQ 1041

Query: 1010 QVLADFLSISINFVPN-GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQM 1068
            QVL+DFL   + + P+  G + +       Q+   + L + E R+   G G+P  L+  M
Sbjct: 1042 QVLSDFLLNIVRYAPSPDGWVEIHVRPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDM 1101

Query: 1069 FGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
            F +    ++EG+ L +SRK++KLMNG+VQY+REA +  F V +EL
Sbjct: 1102 FNNSRWGTQEGLGLSMSRKILKLMNGEVQYIREAERCYFYVLLEL 1146


>sp|P55004|PHYE_IPONI Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1
          Length = 1115

 Score = 1094 bits (2830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1121 (50%), Positives = 757/1121 (67%), Gaps = 44/1121 (3%)

Query: 4    SRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETS---GTSFDYSNSVRVSSTAGGDQQ 60
            S  A S+ NTGK+      IAQ   DAKL A+FE S   G SFDYS SV  +       Q
Sbjct: 11   SSSATSNLNTGKA------IAQYNADAKLMAEFEQSRESGKSFDYSRSVIHAP------Q 58

Query: 61   PRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDH 120
              ++   TAYL  IQ+G LIQPFGC+LA++E +FK++ +SEN  +LL + +   P     
Sbjct: 59   NVTEEEMTAYLSRIQRGGLIQPFGCMLAIEEPSFKIVGFSENCFDLLGLKSGVEPP---E 115

Query: 121  PVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLII 180
             +  IG D +T+FT  S ++L KA+   E+SLLNPI VH K + KPFYA++HR+   ++I
Sbjct: 116  RMSLIGIDARTLFTLSSRASLAKAVASREISLLNPIWVHSKINQKPFYAVLHRIDVGIVI 175

Query: 181  DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVM 240
            D EP    +  +  AGA+QS KLA +AI+RLQSLP G +  LCDT++++V +LTGYDRVM
Sbjct: 176  DLEPANSADPALLLAGAVQSQKLAVRAISRLQSLPGGDIGTLCDTVVEDVQKLTGYDRVM 235

Query: 241  AYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV 300
             YKFH+D HGEVVSEI +S LEPYLGLHYPATDIPQAARFLF +N+VRMI DC A+ VKV
Sbjct: 236  VYKFHDDSHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNAQPVKV 295

Query: 301  LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKR 360
            LQ E+L   L L  STLR+PH CH +YM NM SIASLVMAVV+N  E            +
Sbjct: 296  LQCEELKQPLCLVNSTLRSPHGCHTKYMANMGSIASLVMAVVINSSES----------MK 345

Query: 361  LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDML 420
            LWGLVVCH+T+PR+VPFPLRYACEFL Q F++ +  EL+L  Q+ EK IL+TQTLLCDML
Sbjct: 346  LWGLVVCHHTSPRYVPFPLRYACEFLMQAFSLQLYMELQLASQLAEKKILQTQTLLCDML 405

Query: 421  MRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTG 480
            +RDAP GIVTQ+P+IMDLV+CDGAAL Y  K W LGVTP + Q+ DI  WL   H DSTG
Sbjct: 406  LRDAPFGIVTQTPSIMDLVRCDGAALYYNGKCWLLGVTPTETQVKDIAEWLLHNHGDSTG 465

Query: 481  LSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDEKDD 540
            LS D L DAGY GA  LGD V GMA  RI+ KD +FWFRS TA EV+WGGAKH P++KDD
Sbjct: 466  LSTDCLSDAGYPGAPLLGDAVSGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDD 525

Query: 541  GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKL 600
            G +MHPRSSF AFLEVVK+RSLPW+D E++AIHSLQLI+R++ + +G   +  KS+ S  
Sbjct: 526  GGRMHPRSSFIAFLEVVKSRSLPWEDSEINAIHSLQLIMRDSLQGIGENYM--KSVSSPQ 583

Query: 601  CDLKIEGMK--ELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIG 658
             +   +G++  EL ++  E+VRL+ETATVPI  VD  GL+NGWN KIAELTGL  + AIG
Sbjct: 584  QN-DSDGVRFYELSSMALELVRLVETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIG 642

Query: 659  KHFL-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDL 717
            K+ +  +  + S +T K ++  ALQG+E++N++ ++   G+    + + L+VNAC SRD 
Sbjct: 643  KYLIDDVTHEDSHETFKALMCRALQGEEDRNVEVKLLKFGNHPTKEVVYLVVNACTSRDY 702

Query: 718  HDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPA 777
             ++++GVCFV QDITP+K VMDKF R++GDY+AI+Q+ NPLIPPIF SDE   C EWN A
Sbjct: 703  KNDIIGVCFVGQDITPEKAVMDKFVRLQGDYEAIIQSLNPLIPPIFASDENACCSEWNAA 762

Query: 778  MVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGF 837
            M +LTG  + EVI K L  E+FG     CRLK Q+A     I+L + +SG D EK+ FGF
Sbjct: 763  MERLTGLVKCEVIGKRLPGEIFG---GLCRLKGQDALTKFMILLYQGISGHDTEKLSFGF 819

Query: 838  FARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALA 897
            F R G + +  +  NK+ D  G + G FCFLQ  + +  Q        ++  L  LK  A
Sbjct: 820  FDRKGNFIDVFITANKRTDERGNIIGCFCFLQTMAVDHPQISARDIEDDRECLSTLKEFA 879

Query: 898  YTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDG-Y 956
            Y ++Q++NPL+GI F+ K++EGT     QK+ L TS  C++Q+  I+++ D   I+DG  
Sbjct: 880  YIQQQMKNPLNGIRFTHKLLEGTVTSDHQKQFLETSEACEKQILSIIENMDSGGIVDGNR 939

Query: 957  LDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFL 1016
            ++L+  EF +  V+ A +SQVM+    K ++++++  +QI S  +YGD I+LQ VL+DFL
Sbjct: 940  VELKTEEFVIGNVIDAVVSQVMIPLKEKNLQLLHDIPDQIKSLPIYGDQIKLQLVLSDFL 999

Query: 1017 SISINFVPNGG---QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMF-GSE 1072
               +   P+     ++ VS  L   Q G      +++ R+TH G G+P  L++ M  G  
Sbjct: 1000 LSIVRHAPSPDGWVEIRVSPGLKLIQDGNV--FIHIQFRMTHPGQGLPSALIEDMVRGGT 1057

Query: 1073 GDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
              T++EG+ L +S+KLV++MNG V Y+RE  K  F++ ++ 
Sbjct: 1058 RWTTQEGVVLHLSQKLVRMMNGHVHYVREQQKCYFLIDLDF 1098


>sp|P42498|PHYE_ARATH Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=2
          Length = 1112

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1132 (47%), Positives = 732/1132 (64%), Gaps = 68/1132 (6%)

Query: 2    SSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETS---GTSFDYSNSVRVSSTAGGD 58
            S+ +P    SNT          AQ ++DA L ADF  S   G SF+YS SV     +  +
Sbjct: 11   SNMKPQPQKSNT----------AQYSVDAALFADFAQSIYTGKSFNYSKSV----ISPPN 56

Query: 59   QQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVG 118
              P  D   TAYL +IQ+G L+QPFGCL+A++E +F+++  S+N+ + L ++  ++PS  
Sbjct: 57   HVP--DEHITAYLSNIQRGGLVQPFGCLIAVEEPSFRILGLSDNSSDFLGLL--SLPSTS 112

Query: 119  DH----PVLG-IGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHR 173
                   V G IG D +T+FT  S ++L KA  F E+SLLNP+LVH +T+ KPFYAI+HR
Sbjct: 113  HSGEFDKVKGLIGIDARTLFTPSSGASLSKAASFTEISLLNPVLVHSRTTQKPFYAILHR 172

Query: 174  VTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFEL 233
            +   +++D EP K  +  +T AGA+QS KLA +AI+RLQSLP G +  LCDT++++V  L
Sbjct: 173  IDAGIVMDLEPAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRL 232

Query: 234  TGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDC 293
            TGYDRVM Y+FHEDDHGEVVSEI +S LEPYLGLHYPATDIPQAARFLF +N+VRMI DC
Sbjct: 233  TGYDRVMVYQFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDC 292

Query: 294  RARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNT 353
             A  VKV+Q E+L   L L  STLRAPH CH QYM NM S+ASL +A+VV  ++      
Sbjct: 293  NATPVKVVQSEELKRPLCLVNSTLRAPHGCHTQYMANMGSVASLALAIVVKGKDS----- 347

Query: 354  LPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQ 413
                  +LWGLVV H+ +PR+VPFPLRYACEFL Q F + +  EL+L  Q+ EK  +RTQ
Sbjct: 348  -----SKLWGLVVGHHCSPRYVPFPLRYACEFLMQAFGLQLQMELQLASQLAEKKAMRTQ 402

Query: 414  TLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSE 473
            TLLCDML+RD    IVTQSP IMDLVKCDGAAL YK K W +GVTPN+ Q+ D+V+WL E
Sbjct: 403  TLLCDMLLRDTVSAIVTQSPGIMDLVKCDGAALYYKGKCWLVGVTPNESQVKDLVNWLVE 462

Query: 474  YHM-DSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAK 532
             H  DSTGL+ DSL DAGY GA++LGD VCG+AA   S KD + WFRS TAS ++WGGAK
Sbjct: 463  NHGDDSTGLTTDSLVDAGYPGAISLGDAVCGVAAAGFSSKDYLLWFRSNTASAIKWGGAK 522

Query: 533  HEPDEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLD 592
            H P +KDD  +MHPRSSF AFLEV K+RSLPW+  E+DAIHSL+LI+R +F         
Sbjct: 523  HHPKDKDDAGRMHPRSSFTAFLEVAKSRSLPWEISEIDAIHSLRLIMRESF--------- 573

Query: 593  TKSIHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLS 652
            T S      +       EL +   EMVR+IETAT PI  VD  G +NGWN K AE+TGL 
Sbjct: 574  TSSRPVLSGNGVARDANELTSFVCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLL 633

Query: 653  VDKAIGKHFL-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDD---PITLI 708
              +A+GK     +V++ S   ++ +L  ALQG+EE+++  +++  G   + D    + ++
Sbjct: 634  ASEAMGKSLADEIVQEESRAALESLLCKALQGEEEKSVMLKLRKFGQNNHPDYSSDVCVL 693

Query: 709  VNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEF 768
            VN+C SRD  +N++GVCFV QDIT +K + D+F R++GDYK IVQ+ NPLIPPIF SDE 
Sbjct: 694  VNSCTSRDYTENIIGVCFVGQDITSEKAITDRFIRLQGDYKTIVQSLNPLIPPIFASDEN 753

Query: 769  GWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQ 828
              C EWN AM KLTGW + EVI K+L  EVFG     C++K Q++     I L + ++G 
Sbjct: 754  ACCSEWNAAMEKLTGWSKHEVIGKMLPGEVFGV---FCKVKCQDSLTKFLISLYQGIAGD 810

Query: 829  D-PEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQ 887
            + PE     FF + GKY E  L  NK  + EG V   F FLQ+ + E    L    L E 
Sbjct: 811  NVPESSLVEFFNKEGKYIEASLTANKSTNIEGKVIRCFFFLQIINKE--SGLSCPELKE- 867

Query: 888  TALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDS 947
             + + L  L Y +++I+NPL+GI F+ K++E +E+ A Q++ L TS  C++Q+  I++ +
Sbjct: 868  -SAQSLNELTYVRQEIKNPLNGIRFAHKLLESSEISASQRQFLETSDACEKQITTIIEST 926

Query: 948  DLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIR 1007
            DL SI +G L LE  EF L  +L   ISQVM+    +  ++  E AE+I +  L GD ++
Sbjct: 927  DLKSIEEGKLQLETEEFRLENILDTIISQVMIILRERNSQLRVEVAEEIKTLPLNGDRVK 986

Query: 1008 LQQVLADFLSISINFVPN-----GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPE 1062
            LQ +LAD L   +N  P      G  +     L++D  G+ +HL +   R+ H G G+P 
Sbjct: 987  LQLILADLLRNIVNHAPFPNSWVGISISPGQELSRDN-GRYIHLQF---RMIHPGKGLPS 1042

Query: 1063 PLLDQMFGS-EGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113
             +L  MF + +G  + +G+ L +SRKL++ MNG V Y+RE  +  F V +++
Sbjct: 1043 EMLSDMFETRDGWVTPDGLGLKLSRKLLEQMNGRVSYVREDERCFFQVDLQV 1094


>sp|P25848|PHY1_CERPU Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3
           SV=3
          Length = 1307

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/784 (59%), Positives = 591/784 (75%), Gaps = 16/784 (2%)

Query: 1   MSSSRPAQSSSNTGKSRHSARVIAQTTIDAKLHADFETSGTS---FDYSNSVRVSSTAGG 57
           MS+++   SS+ + KS+HS RV AQTT DA L A +E SG S   FDYS SV      G 
Sbjct: 1   MSATKKTYSSTTSAKSKHSVRV-AQTTADAALEAVYEMSGDSGDSFDYSKSV------GQ 53

Query: 58  DQQPRSDRVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSV 117
             +       TAYL  +Q+  LIQ FGC++A++E  F VIAYSENA E L ++  AVPS+
Sbjct: 54  SAESVPAGAVTAYLQRMQREGLIQNFGCMVAVEEPNFCVIAYSENASEFLDLIPQAVPSM 113

Query: 118 GDHPVLGIGSDIKTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGS 177
           G+  VLGIG+DI+T+FT  S++AL+KA    ++SLLNPI VHC+ SGKP YAI HR+   
Sbjct: 114 GEMDVLGIGTDIRTLFTPSSSAALEKAAATQDISLLNPITVHCRRSGKPLYAIAHRIDIG 173

Query: 178 LIIDFEPVKPYEVPMTAA-GALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGY 236
           ++IDFE VK  +VP++AA GALQS+KLAA+AITRLQ+LP G +E LCDT+++EV ELTGY
Sbjct: 174 IVIDFEAVKMIDVPVSAAAGALQSHKLAARAITRLQALPGGDIELLCDTIVEEVRELTGY 233

Query: 237 DRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAR 296
           DRVMA+KFHED+HGEVV+EI +  LEPY+GLHYPATDIPQA+RFL MKN+VR+I DC A 
Sbjct: 234 DRVMAFKFHEDEHGEVVAEIRRMDLEPYMGLHYPATDIPQASRFLLMKNRVRLIADCYAS 293

Query: 297 HVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQ 356
            VK++QD  +   ++L GSTLRAPH CH QYM NM SIASLVMAV++ND EE     + Q
Sbjct: 294 PVKLIQDPDIRQPVSLAGSTLRAPHGCHAQYMGNMGSIASLVMAVIINDNEEYSRGAI-Q 352

Query: 357 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLL 416
           + ++LWGLVVC +T+PR VPFPLR  CEFL QVF + +N  +EL  Q+ EK+ILRTQTLL
Sbjct: 353 RGRKLWGLVVCQHTSPRTVPFPLRSVCEFLMQVFGMQLNLHVELAAQLREKHILRTQTLL 412

Query: 417 CDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHM 476
           CDML+RDAP+GIV+Q+PNIMDLVKCDGAAL Y  ++W LG TP + Q+ +I  WL E+H 
Sbjct: 413 CDMLLRDAPIGIVSQTPNIMDLVKCDGAALYYGKRVWLLGTTPTENQIKEIADWLLEHHN 472

Query: 477 DSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPD 536
           DSTGLS DSL DA Y GA  LGD VCGMAA +I+ KD +FWFRS TA+EV+WGGAKH+PD
Sbjct: 473 DSTGLSTDSLADANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTATEVKWGGAKHDPD 532

Query: 537 EKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKS- 595
           EKDDGRKMHPRSSFKAFLEVV  RS PW+D EMDAIHSLQLILR +F+D+   D DTK+ 
Sbjct: 533 EKDDGRKMHPRSSFKAFLEVVNKRSPPWEDVEMDAIHSLQLILRGSFRDIA--DSDTKTM 590

Query: 596 IHSKLCDLKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDK 655
           IH++L DLK++G++E  A+ +EM R++ETA  PILAVD  G++N WN KIA++TGL V++
Sbjct: 591 IHARLNDLKLQGVEERNALANEMSRVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEE 650

Query: 656 AIGKHFLT-LVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITLIVNACAS 714
           A+       LV D S+  V+R+L LALQG+EEQN++ ++KT G++  +  + LIVNAC S
Sbjct: 651 AMHCSLTKDLVLDESVVVVERLLSLALQGEEEQNVEIKLKTFGTQTTERAVILIVNACCS 710

Query: 715 RDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEW 774
           RD  D VVGV FV QD+T Q+  MD+FTRI+G  K  VQ+P+PL+ P F  DEFG   + 
Sbjct: 711 RDASDFVVGVFFVGQDVTEQRMFMDRFTRIQGGEKTTVQDPHPLMRPSFDGDEFGRTFKR 770

Query: 775 NPAM 778
           N A+
Sbjct: 771 NSAL 774


>sp|P06595|PHYA5_AVESA Phytochrome A type 5 (Fragment) OS=Avena sativa GN=PHYA5 PE=1 SV=3
          Length = 495

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/477 (71%), Positives = 400/477 (83%), Gaps = 7/477 (1%)

Query: 20  ARVIAQTTIDAKLHADFETSGTSFDYSNSVRVSSTAGGDQQPRSDRVTTAYLHHIQKGKL 79
           ARV+AQTT+DA+L+A++E SG SFDYS  V         QQ RS++V  AYL HIQKGKL
Sbjct: 20  ARVLAQTTLDAELNAEYEESGDSFDYSKLVEAQRDGPPVQQGRSEKVI-AYLQHIQKGKL 78

Query: 80  IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
           IQ FGCLLALDEK+F VIA+SENAPE+LT V+HAVPSV D P LGIG++++++F+   A+
Sbjct: 79  IQTFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGAT 138

Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
           AL KALGF +VSLLNPILV CKTSGKPFYAIVHR TG L++DFEPVKP E P TAAGALQ
Sbjct: 139 ALHKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQ 198

Query: 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS 259
           SYKLAAKAI+++QSLP GSME LC+T+++EVF+LTGYDRVMAYKFHEDDHGEV SEITK 
Sbjct: 199 SYKLAAKAISKIQSLPGGSMEMLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFSEITKP 258

Query: 260 GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRA 319
           GLEPYLGLHYPATDIPQAARFLFMKNKVRMI DCRAR +KV++ E LPFD++LCGS LRA
Sbjct: 259 GLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSALRA 318

Query: 320 PHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQK-----RKRLWGLVVCHNTTPRF 374
           PHSCHLQYMENMNSIASLVMAVVVN+ EE+ +    Q      +K+LWGL+VCH+ +PR+
Sbjct: 319 PHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQKKKKLWGLLVCHHESPRY 378

Query: 375 VPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA-PLGIVTQSP 433
           VPFPLRYACEFLAQVFA+HVN+E ELE Q+ EKNIL+ QT+L DML R+A PL IV+ +P
Sbjct: 379 VPFPLRYACEFLAQVFAVHVNREFELEKQLREKNILKMQTMLSDMLFREASPLTIVSGNP 438

Query: 434 NIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYDAG 490
           NIMDLVKCDGAALLY  K+WRL   P + Q+HDI  WLS+ H DSTGLS DSL+DAG
Sbjct: 439 NIMDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAG 495


>sp|Q9LCC2|PHYA_NOSS1 Cyanobacterial phytochrome A OS=Nostoc sp. (strain PCC 7120 / UTEX
           2576) GN=aphA PE=3 SV=1
          Length = 765

 Score =  257 bits (656), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 165/522 (31%), Positives = 266/522 (50%), Gaps = 54/522 (10%)

Query: 80  IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
           IQP G LL L+E   K++  S N   +L +    +          +   ++ +  +    
Sbjct: 26  IQPHGVLLVLEEPGLKILQVSNNTWGILGINAENI----------LQKKLEDLLDSFQIE 75

Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKP---FYAIVHRVT-GSLIIDFEPVKPYE-VPMTA 194
            +Q  L  G +  +NP  +  +  G     F A+ HR T G LI++ EP    E +P   
Sbjct: 76  RIQSGLSSGNLEFINPTKIWIRKKGDDYAVFDAVFHRNTEGFLILELEPAITQENIPF-- 133

Query: 195 AGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVS 254
              L  Y LA  +I +LQ   + ++   C  ++QEV ++T +DRVM YKF +D HG V++
Sbjct: 134 ---LSFYHLAKASINQLQK--TANLRDFCQIIVQEVRKVTDFDRVMLYKFDDDGHGSVIA 188

Query: 255 EITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQD----EKLPFDL 310
           E     LEPYLGLHYP +DIP+ AR LF+ N +R+I + +A+ ++++         P DL
Sbjct: 189 EEKLDSLEPYLGLHYPESDIPKPARKLFISNSIRVIPNAQAQAIQMIPALNPVSDRPVDL 248

Query: 311 TLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNT 370
           T   S LR+  +CHL+Y+ NM   ASL ++++              K  +LWGL+ CH+ 
Sbjct: 249 T--NSILRSAANCHLEYLHNMGVGASLTISLI--------------KDNKLWGLIACHHL 292

Query: 371 TPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPL--GI 428
           + ++V + LR ACEFL +V    ++   E E      N+   Q+LL + + ++     G+
Sbjct: 293 SAKYVSYELRKACEFLGRVIFAEISAREETEDYDYRMNLTHIQSLLVEYMSQEDNFVDGL 352

Query: 429 VTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYD 488
           +   P+++DL    GAA+ + +    +G TP    L  +V WL   +++      DSL  
Sbjct: 353 IKHQPSLLDLTSAQGAAVCFGDHCTLIGETPKAEDLVFLVQWLKN-NVEEEVFYTDSLPQ 411

Query: 489 AGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE--KDDGR-KMH 545
             Y  A    +V  G+ A+ IS ++ + WFR +    V WGG  ++P E  K DG  ++ 
Sbjct: 412 V-YPDAERYKNVASGLLAIPISQRNYVLWFRPEVIQTVNWGGDPNQPFEVNKLDGNVRLC 470

Query: 546 PRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQ-----LILRNA 582
           PR SF+ + E V+  SLPW+  E+ A   L+     ++LR A
Sbjct: 471 PRKSFELWKETVRLTSLPWRYVEIRAALELRKAIVNIVLRQA 512


>sp|Q55168|PHY1_SYNY3 Phytochrome-like protein cph1 OS=Synechocystis sp. (strain PCC 6803
           / Kazusa) GN=cph1 PE=1 SV=1
          Length = 748

 Score =  243 bits (621), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 159/528 (30%), Positives = 258/528 (48%), Gaps = 54/528 (10%)

Query: 74  IQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIF 133
           I    LIQP G ++ L E    +   S N   +L          G  P   +G  +  +F
Sbjct: 20  IHTAHLIQPHGLVVVLQEPDLTISQISANCTGIL----------GRSPEDLLGRTLGEVF 69

Query: 134 TAPSASALQKALGFGEVSLLNPILVHCKTSGKPFY---AIVHRVT-GSLIIDFEPVKPYE 189
            +     +Q  L  G++S LNP  +  +  G  F     + HR + G L+ + EP    +
Sbjct: 70  DSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSD 129

Query: 190 -VPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDD 248
            +P      L  Y +A  A+ RL+     ++    D +++EV  +TG+DRVM Y+F E++
Sbjct: 130 NLPF-----LGFYHMANAALNRLRQ--QANLRDFYDVIVEEVRRMTGFDRVMLYRFDENN 182

Query: 249 HGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHV----KVLQDE 304
           HG+V++E  +  +EPYLGLHYP +DIPQ AR LF+ N +R+I D     V     V    
Sbjct: 183 HGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPST 242

Query: 305 KLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGL 364
               DLT   S LR+ + CHL Y++NM   ASL ++++              K   LWGL
Sbjct: 243 NRAVDLT--ESILRSAYHCHLTYLKNMGVGASLTISLI--------------KDGHLWGL 286

Query: 365 VVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA 424
           + CH+ TP+ +PF LR ACEF  +V   +++ + + E       +   + +L D +   A
Sbjct: 287 IACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAA 346

Query: 425 PL--GIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLS 482
               G+      ++ L    GAA+ +  K+  +G TP++  +  ++ WL    +     +
Sbjct: 347 DFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFT 406

Query: 483 ADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE--KDD 540
             S     Y  A+    V  G+ A+ I+  + + WFR +    V WGG  +   E  ++D
Sbjct: 407 --SSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQED 464

Query: 541 GR-KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQ-----LILRNA 582
           G+ ++HPR SF  + E+V+ +SLPW+  E+ +  +L+     LILR A
Sbjct: 465 GKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILRQA 512


>sp|Q9R6X3|PHYB_NOSS1 Cyanobacterial phytochrome B OS=Nostoc sp. (strain PCC 7120 / UTEX
           2576) GN=bphB PE=3 SV=1
          Length = 751

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 253/507 (49%), Gaps = 50/507 (9%)

Query: 79  LIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSA 138
           LIQP G LL L E    ++  S N   +L          G HP   +   +  +  A   
Sbjct: 27  LIQPHGVLLVLQEVDLTILQVSNNTFNIL----------GRHPEQLLNQHLSCLLEAEQL 76

Query: 139 SALQKALGFGEVSLLNPI--LVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196
           S L+  L   ++ ++NP+  ++        F  I HR    LI++ E      +      
Sbjct: 77  SLLKDCLAQEDLQIINPLEFIIKSHNESISFDVIAHRSNNLLILELEA----NLSDKTHS 132

Query: 197 ALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEI 256
             + Y L   A+ +LQ   + +   +   + QEV ++TG+DRVM Y+F E  +G+V++E+
Sbjct: 133 FFRFYHLVKLAMLKLQG--TATTTEISQILAQEVRKITGFDRVMVYRFDEQWNGKVIAEV 190

Query: 257 TKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV------LQDEKLPFDL 310
               L  YLGL+YPA+DIPQ AR L+ +N +R+I D + + V +      L D+  P DL
Sbjct: 191 KPEYLTSYLGLNYPASDIPQQARKLYSQNWLRLIPDAKYQPVPIVPINNPLNDQ--PLDL 248

Query: 311 TLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNT 370
           +   S LR+    H++YM+NM   AS+ ++++              K ++LWGL+ CH+ 
Sbjct: 249 S--RSVLRSVSPLHIEYMQNMGVTASMSISIM--------------KNQKLWGLIACHHQ 292

Query: 371 TPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPL--GI 428
           +P+++P+ +R ACEFL Q+ ++ ++ + + E    +  +    + L   +  +      +
Sbjct: 293 SPKYIPYEIRSACEFLGQMTSVEMSAKEDSEDTEDKIQVKSVHSKLVQYMSAENDFINAL 352

Query: 429 VTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSEYHMDSTGLSADSLYD 488
           +   PNI+DLVK  GAA+ +      +G  P    +  +V W+S+ ++     + DSL  
Sbjct: 353 IDHQPNILDLVKAQGAAVCFNGNSCTVGQVPPMPDIQVLVEWMSQ-NIHEEIFATDSLAT 411

Query: 489 AGYLGALALGDVVCGMAAVRI--SPKDMIFWFRSQTASEVRWGGAKHEPDE--KDDGRKM 544
             Y  A  L DV  G+ A+ I  S K+ I WFR +    V WGG  H+P E   +   ++
Sbjct: 412 V-YPDAEKLRDVASGLIALSISRSQKNYILWFRPEVVRTVDWGGNPHKPVEVIANGEIRL 470

Query: 545 HPRSSFKAFLEVVKTRSLPWKDYEMDA 571
            PR SF  + E V  +S PWK +E++A
Sbjct: 471 SPRKSFDLWKETVLLKSQPWKSHEVNA 497


>sp|Q9HWR3|BPHY_PSEAE Bacteriophytochrome OS=Pseudomonas aeruginosa (strain ATCC 15692 /
           PAO1 / 1C / PRS 101 / LMG 12228) GN=bphP PE=1 SV=1
          Length = 728

 Score =  167 bits (424), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 148/527 (28%), Positives = 234/527 (44%), Gaps = 87/527 (16%)

Query: 80  IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
           IQP G L+ L      V+A SEN   LL  V                        +P + 
Sbjct: 23  IQPHGALVTLRADGM-VLAASENIQALLGFV-----------------------ASPGSY 58

Query: 140 ALQKALGFGEVSLLNPILVHCKTSGKPFYAIVHRVTGSLIID-----FEPVKPYEVPMTA 194
             Q+ +G   + +L   L    T   P+   V    G  + D     ++ V   E  +  
Sbjct: 59  LTQEQVGPEVLRMLEEGL----TGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRT 114

Query: 195 AGALQ--SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEV 252
           A  L   S+ L A+ I     L + +   L   +  E+  +TGYDRVMAY+F  DD GEV
Sbjct: 115 ADTLSITSFTLNAQRIIAQVQLHNDTAS-LLSNVTDELRRMTGYDRVMAYRFRHDDSGEV 173

Query: 253 VSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVL----QDEKLPF 308
           V+E  +  LE YLG  YPA+DIP  AR L+++N +R+I D     ++V      +    F
Sbjct: 174 VAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESF 233

Query: 309 DLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCH 368
           DL+   S LR+    H +Y+ NM   AS+ +++VV                +LWGL  CH
Sbjct: 234 DLSY--SVLRSVSPIHCEYLTNMGVRASMSISIVVG--------------GKLWGLFSCH 277

Query: 369 NTTPRFVPFPLRYACEFLAQVFAIHVNK-ELELEYQILEKNILRTQTLLCDMLMRDAPLG 427
           + +P+ +P+P+R + +  +QV +  V + E     ++L  +  R   L       D   G
Sbjct: 278 HMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFG 337

Query: 428 IVTQSPN-IMDLVKCDGAALLYKNKIWRLGVTPNDF--QLHDIVSWLSE------YHMDS 478
            +    + I  L+ CDGA ++   +   +     DF  Q  +++  L        YH D+
Sbjct: 338 ALAHPDDGIAALIPCDGALVMLGGRTLSIR---GDFERQAGNVLQRLQRDPERDIYHTDN 394

Query: 479 TGLSADSLYDAGYLGALALGDVVCGMAAVRISPKD--MIFWFRSQTASEVRWGGAKHEPD 536
               ++   D G           CG+ A+R   ++   IFWFR +    +RWGG   +P+
Sbjct: 395 WPQPSEDSPDGGD---------CCGVLAIRFHRQESGWIFWFRHEEVHRIRWGG---KPE 442

Query: 537 E----KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLIL 579
           +       G ++ PR SF+A+ EVV+  S PW + ++     L+L L
Sbjct: 443 KLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDL 489


>sp|Q9RZA4|BPHY_DEIRA Bacteriophytochrome OS=Deinococcus radiodurans (strain ATCC 13939 /
           DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
           9279 / R1 / VKM B-1422) GN=bphP PE=1 SV=1
          Length = 755

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 147/525 (28%), Positives = 232/525 (44%), Gaps = 74/525 (14%)

Query: 80  IQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSAS 139
           IQP G LL  D  + +V+  S NA   L          G  P +  G  +  +       
Sbjct: 35  IQPHGALLTADGHSGEVLQMSLNAATFL----------GQEPTVLRGQTLAALLPE-QWP 83

Query: 140 ALQKALGFG-------EVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPM 192
           ALQ AL  G         +L  P   H   +       VHRV   LI++FEP + ++   
Sbjct: 84  ALQAALPPGCPDALQYRATLDWPAAGHLSLT-------VHRVGELLILEFEPTEAWD--S 134

Query: 193 TAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEV 252
           T   AL++   A      L+S P+  +  L +   Q V ELTG+DRVM YKF  D  GEV
Sbjct: 135 TGPHALRNAMFA------LESAPN--LRALAEVATQTVRELTGFDRVMLYKFAPDATGEV 186

Query: 253 VSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKV--LQDEKLPFDL 310
           ++E  + GL  +LG  +PA+DIP  AR L+ ++ +R+  D RA  V +  + + +     
Sbjct: 187 IAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPT 246

Query: 311 TLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNT 370
            L G+ LRA    H+QY+ NM   +SL ++VVV  +              LWGL+ CH+ 
Sbjct: 247 PLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQ--------------LWGLIACHHQ 292

Query: 371 TPRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDAPLGIVT 430
           TP  +P  LR   E+L ++ ++ V  +   +     +++      +              
Sbjct: 293 TPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTL 352

Query: 431 QSP--NIMDLVKCDGAALLYKNKIWRLGVTPNDFQLHDIVSWLSE-----YHMDSTGLSA 483
             P  +++ L++  G  L ++ +   LG  P    +  +++WL          D+ G   
Sbjct: 353 SDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALG--- 409

Query: 484 DSLYDAGYLGALALGDVVCGMAAVRISP--KDMIFWFRSQTASEVRWGGAKHEPDE-KDD 540
             L+ AG      L     G+ A+ +     + + W R +   EV WGGA   PD+ KDD
Sbjct: 410 -QLWPAGA----DLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGGAT--PDQAKDD 462

Query: 541 GRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKD 585
              + PR SF  +LE  +  + PW   E++    L+  L  A  +
Sbjct: 463 ---LGPRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGALGE 504


>sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase B OS=Dictyostelium
            discoideum GN=dhkB PE=1 SV=1
          Length = 1969

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 125/251 (49%), Gaps = 22/251 (8%)

Query: 874  ELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTS 933
            +L +A +  R +E     ++  L     ++R P++G++ S  ++E T L + QK  L+  
Sbjct: 943  QLMEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTLDSTQKEFLNCI 1002

Query: 934  AQCQRQLHKILDDS-DLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRI---V 989
                  L  +++D  D   I  G +++   +F++ ++L  SI  V      KG+ +   +
Sbjct: 1003 KLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVSKNIYEKGLDLCIFI 1062

Query: 990  NETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYL 1049
            +     I++    GD  R++Q+L +FLS SI F  N GQ+++   L  D    S+    +
Sbjct: 1063 DPNVPVIVN----GDQRRIKQILLNFLSNSIKFT-NHGQIIIRVKLESDDSTHSL----I 1113

Query: 1050 ELRITHAGGGIPEPLLDQMFGS-----EGDTSE---EGISLLISRKLVKLMNGDVQYLRE 1101
            +  +  +G GI    L+Q+F S      G++ +    G+ L IS++L K+M GDV+   E
Sbjct: 1114 KFDVEDSGIGIKTEHLNQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGDVKVKSE 1173

Query: 1102 AG-KSTFIVSV 1111
             G  STF  ++
Sbjct: 1174 FGVGSTFSFTI 1184


>sp|Q54YZ9|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium
            discoideum GN=dhkJ PE=3 SV=2
          Length = 2062

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 19/267 (7%)

Query: 855  LDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKA----LAYTKRQIRNPLSGI 910
            +D +G V  +   +    H L++      L+++TA    +A    +A    +IR P++GI
Sbjct: 1306 VDAKGEVNLLKLIINEMIHNLKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGI 1365

Query: 911  IFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDS-DLDSIIDGYLDLEMVEFTLNEV 969
            I    +   TEL AEQ+  L         L  I++D  D   I  G L+L+  EF+L   
Sbjct: 1366 IGMTDLTLDTELTAEQREYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAH 1425

Query: 970  LVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQL 1029
            L  ++  +  +++ K I +V + A  +  ++L GD  RL+Q++ + +  +I F   G   
Sbjct: 1426 LYDALKTLSWRAHQKCIELVCDIASDV-PDSLIGDPGRLRQIVNNLVGNAIKFTSQGEVD 1484

Query: 1030 MVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFG--SEGDTS------EEGIS 1081
            +V     K +   S     L+  +   G GIP+  L  +F   S+ D S        G+ 
Sbjct: 1485 LV----VKVEKSLSCGEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLG 1540

Query: 1082 LLISRKLVKLMNGDVQYLREAGK-STF 1107
            L IS +LV+LM G +  + ++GK STF
Sbjct: 1541 LTISTRLVELMKGKLSVVSKSGKGSTF 1567


>sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia coli
            (strain K12) GN=barA PE=1 SV=1
          Length = 918

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 882  QRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLH 941
            ++ +++ A  + + LA    ++R PL+G+I   ++   TEL   Q+  L+T  +    L 
Sbjct: 283  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 942  KILDDS-DLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSET 1000
             I++D  D   +  G L LE + F L   L   ++ +   S+ KG+ +       +  + 
Sbjct: 343  AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDV-PDN 401

Query: 1001 LYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGI 1060
            + GD +RLQQ++ + +  +I F  NG    +   + K  L  +     +E++I   G GI
Sbjct: 402  VIGDPLRLQQIITNLVGNAIKFTENGN---IDILVEKRALSNTK--VQIEVQIRDTGIGI 456

Query: 1061 PEPLLDQMFGS--EGDTS------EEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSV 1111
            PE    ++F +  + D S        G+ L+I++KLV  M GD+ +  +  + STF   +
Sbjct: 457  PERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516

Query: 1112 EL 1113
             L
Sbjct: 517  NL 518


>sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia coli
            O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA PE=1
            SV=1
          Length = 918

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 882  QRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLH 941
            ++ +++ A  + + LA    ++R PL+G+I   ++   TEL   Q+  L+T  +    L 
Sbjct: 283  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 942  KILDDS-DLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSET 1000
             I++D  D   +  G L LE + F L   L   ++ +   S+ KG+ +       +  + 
Sbjct: 343  AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDV-PDN 401

Query: 1001 LYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGI 1060
            + GD +RLQQ++ + +  +I F  NG    +   + K  L  +     +E++I   G GI
Sbjct: 402  VIGDPLRLQQIITNLVGNAIKFTENGN---IDILVEKRALSNTK--VQIEVQIRDTGIGI 456

Query: 1061 PEPLLDQMFGS--EGDTS------EEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSV 1111
            PE    ++F +  + D S        G+ L+I++KLV  M GD+ +  +  + STF   +
Sbjct: 457  PERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516

Query: 1112 EL 1113
             L
Sbjct: 517  NL 518


>sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia coli
            O157:H7 GN=barA PE=3 SV=1
          Length = 918

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 882  QRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLH 941
            ++ +++ A  + + LA    ++R PL+G+I   ++   TEL   Q+  L+T  +    L 
Sbjct: 283  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 942  KILDDS-DLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSET 1000
             I++D  D   +  G L LE + F L   L   ++ +   S+ KG+ +       +  + 
Sbjct: 343  AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDV-PDN 401

Query: 1001 LYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGI 1060
            + GD +RLQQ++ + +  +I F  NG    +   + K  L  +     +E++I   G GI
Sbjct: 402  VIGDPLRLQQIITNLVGNAIKFTENGN---IDILVEKRALSNTK--VQIEVQIRDTGIGI 456

Query: 1061 PEPLLDQMFGS--EGDTS------EEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSV 1111
            PE    ++F +  + D S        G+ L+I++KLV  M GD+ +  +  + STF   +
Sbjct: 457  PERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516

Query: 1112 EL 1113
             L
Sbjct: 517  NL 518


>sp|P59342|BARA_SHIFL Signal transduction histidine-protein kinase BarA OS=Shigella
            flexneri GN=barA PE=3 SV=1
          Length = 918

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 16/242 (6%)

Query: 882  QRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLH 941
            ++ +++ A  + + LA    ++R PL+G+I   ++   TEL   Q+  L+T  +    L 
Sbjct: 283  KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342

Query: 942  KILDDS-DLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSET 1000
             I++D  D   +  G L LE + F L   L   ++ +   S+ KG+ +       +  + 
Sbjct: 343  AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDV-PDN 401

Query: 1001 LYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGI 1060
            + GD +RLQQ++ + +  +I F  NG    +   + K  L  +     +E++I   G GI
Sbjct: 402  VIGDPLRLQQIITNLVGNAIKFTENGN---IDILVEKRALSNTK--VQIEVQIRDTGIGI 456

Query: 1061 PEPLLDQMFGS--EGDTS------EEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSV 1111
            PE    ++F +  + D S        G+ L+I++KLV  M GD+ +  +  + STF   +
Sbjct: 457  PERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516

Query: 1112 EL 1113
             L
Sbjct: 517  NL 518


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,994,497
Number of Sequences: 539616
Number of extensions: 16920809
Number of successful extensions: 41465
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 40946
Number of HSP's gapped (non-prelim): 218
length of query: 1117
length of database: 191,569,459
effective HSP length: 128
effective length of query: 989
effective length of database: 122,498,611
effective search space: 121151126279
effective search space used: 121151126279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)