Query 001235
Match_columns 1117
No_of_seqs 610 out of 3801
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 5E-120 2E-124 1120.8 49.0 603 72-738 23-635 (635)
2 3zq5_A Phytochrome-like protei 100.0 3E-115 1E-119 1026.6 39.6 481 71-583 17-508 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 3E-112 9E-117 1000.1 50.3 469 71-583 14-493 (505)
4 4e04_A Bacteriophytochrome (li 100.0 7E-81 2.4E-85 690.5 33.5 295 72-398 18-316 (327)
5 3s7o_A Bacteriophytochrome; bi 100.0 2.8E-81 9.4E-86 694.2 29.8 293 71-401 40-337 (343)
6 2ool_A Sensor protein; bacteri 100.0 1.1E-77 3.7E-82 674.2 36.1 296 72-399 31-330 (337)
7 3a0r_A Sensor protein; four he 100.0 3.1E-41 1.1E-45 388.4 19.8 339 741-1116 3-347 (349)
8 4glq_A Methyl-accepting chemot 100.0 4.2E-34 1.4E-38 294.5 16.9 152 208-397 3-155 (171)
9 2c2a_A Sensor histidine kinase 100.0 2.3E-32 7.7E-37 301.2 29.0 233 869-1116 2-250 (258)
10 4fpp_A Phosphotransferase; fou 100.0 1.1E-30 3.6E-35 286.1 22.8 226 858-1112 17-246 (247)
11 4ew8_A Sensor protein DIVL; si 100.0 1.5E-29 5E-34 280.0 30.9 219 887-1116 35-258 (268)
12 3jz3_A Sensor protein QSEC; he 100.0 6.1E-30 2.1E-34 274.3 11.5 210 892-1116 2-219 (222)
13 1gkz_A [3-methyl-2-oxobutanoat 100.0 6.8E-28 2.3E-32 281.7 26.5 217 888-1116 117-375 (388)
14 3d36_A Sporulation kinase B; G 100.0 8.7E-28 3E-32 261.5 25.3 209 891-1116 13-227 (244)
15 2k2n_A Sensor protein, SYB-CPH 100.0 6.9E-28 2.4E-32 248.4 17.0 164 219-396 1-167 (172)
16 2btz_A Pyruvate dehydrogenase 99.9 5E-27 1.7E-31 274.9 24.5 209 894-1115 97-351 (394)
17 2e0a_A Pyruvate dehydrogenase 99.9 1.1E-26 3.6E-31 272.0 26.3 210 892-1115 95-351 (394)
18 2q8g_A [pyruvate dehydrogenase 99.9 2.2E-26 7.4E-31 270.6 26.2 209 894-1115 107-364 (407)
19 3ewk_A Sensor protein; PAS dom 99.9 6.2E-26 2.1E-30 244.6 26.6 221 628-870 1-227 (227)
20 2lb5_A Sensor histidine kinase 99.9 1.7E-26 5.9E-31 245.5 17.9 183 199-397 13-198 (208)
21 1y8o_A [pyruvate dehydrogenase 99.9 7E-26 2.4E-30 267.1 23.5 207 896-1115 121-375 (419)
22 1b3q_A Protein (chemotaxis pro 99.9 5.1E-23 1.7E-27 239.1 18.0 195 890-1116 8-250 (379)
23 3a0y_A Sensor protein; ATP-LID 99.9 6.3E-22 2.2E-26 198.7 20.9 146 960-1116 2-150 (152)
24 3ehh_A Sensor kinase (YOCF pro 99.9 6.2E-22 2.1E-26 211.7 21.2 189 890-1115 26-217 (218)
25 1id0_A PHOQ histidine kinase; 99.9 2.4E-21 8.1E-26 194.8 19.5 141 962-1116 2-147 (152)
26 1r62_A Nitrogen regulation pro 99.9 1.6E-21 5.4E-26 197.5 16.8 155 958-1115 2-160 (160)
27 1ysr_A Sensor-type histidine k 99.9 4.9E-21 1.7E-25 192.2 19.2 140 960-1114 4-149 (150)
28 1bxd_A ENVZ(290-450), protein 99.8 1.6E-20 5.3E-25 191.0 17.1 142 958-1116 4-152 (161)
29 3sl2_A Sensor histidine kinase 99.8 2.4E-20 8.1E-25 192.9 18.0 144 963-1116 2-154 (177)
30 1i58_A Chemotaxis protein CHEA 99.8 4.7E-20 1.6E-24 192.8 15.4 144 961-1114 2-189 (189)
31 4f3l_A Mclock, circadian locom 99.8 1.2E-18 3.9E-23 201.2 20.9 239 617-878 87-360 (361)
32 4f3l_B BMAL1B; BHLH, PAS, circ 99.8 3.3E-18 1.1E-22 199.0 18.5 235 618-876 88-386 (387)
33 3ehg_A Sensor kinase (YOCF pro 99.8 5.3E-18 1.8E-22 165.5 14.1 125 965-1115 3-127 (128)
34 3mr0_A Sensory box histidine k 99.7 4.6E-17 1.6E-21 161.1 14.7 138 609-750 2-141 (142)
35 3zxo_A Redox sensor histidine 99.7 7.1E-17 2.4E-21 157.3 14.8 126 961-1115 2-129 (129)
36 3zxq_A Hypoxia sensor histidin 99.7 1E-15 3.6E-20 147.9 14.9 121 965-1114 2-123 (124)
37 3rty_A Period circadian protei 99.6 1.4E-15 4.9E-20 172.3 17.5 222 628-872 5-262 (339)
38 2pr5_A Blue-light photorecepto 99.6 4.1E-15 1.4E-19 144.7 14.4 127 619-751 2-131 (132)
39 2gj3_A Nitrogen fixation regul 99.6 4.9E-15 1.7E-19 141.5 14.6 117 615-735 4-120 (120)
40 3k3c_A Protein RV1364C/MT1410; 99.6 4.9E-15 1.7E-19 148.3 15.3 140 614-756 15-157 (158)
41 3p7n_A Sensor histidine kinase 99.6 1.9E-15 6.6E-20 165.4 13.3 191 713-917 24-237 (258)
42 3mr0_A Sensory box histidine k 99.6 2.4E-15 8.2E-20 148.7 12.5 137 739-887 2-138 (142)
43 4hia_A LOV protein; PAS, HTH, 99.6 1.7E-15 5.8E-20 154.8 11.1 128 614-745 5-135 (176)
44 3p7n_A Sensor histidine kinase 99.6 2E-15 7E-20 165.3 11.2 175 607-792 54-233 (258)
45 3f1p_B ARYL hydrocarbon recept 99.6 5.1E-15 1.7E-19 141.4 11.9 115 618-736 4-120 (121)
46 3kx0_X Uncharacterized protein 99.6 7.4E-15 2.5E-19 152.3 12.2 141 613-757 34-182 (185)
47 3nja_A Probable ggdef family p 99.6 1.7E-14 5.6E-19 136.7 13.1 122 611-736 2-125 (125)
48 1th8_A Anti-sigma F factor; SP 99.6 1.2E-14 4.3E-19 144.6 12.0 99 1003-1116 35-141 (145)
49 3ue6_A Aureochrome1; PAS/LOV d 99.6 1E-14 3.4E-19 146.7 11.1 131 607-741 26-159 (166)
50 3t50_A Blue-light-activated hi 99.5 3E-14 1E-18 136.5 12.1 123 621-747 2-127 (128)
51 3f1p_A Endothelial PAS domain- 99.5 2.9E-14 9.8E-19 135.1 11.0 110 624-737 7-117 (117)
52 3mxq_A Sensor protein; PSI2, M 99.5 6.4E-14 2.2E-18 140.6 12.5 130 608-738 14-151 (152)
53 4dj3_A Period circadian protei 99.5 4.6E-13 1.6E-17 150.2 19.7 223 621-869 31-277 (317)
54 2gj3_A Nitrogen fixation regul 99.5 4.9E-14 1.7E-18 134.5 9.6 118 744-875 3-120 (120)
55 1d06_A Nitrogen fixation regul 99.5 1.1E-13 3.8E-18 134.0 11.8 122 605-732 5-130 (130)
56 3sw1_A Sensory box protein; li 99.5 1.8E-13 6.3E-18 136.9 13.7 132 615-750 24-158 (162)
57 2zbk_B Type 2 DNA topoisomeras 99.5 5.3E-14 1.8E-18 167.5 10.9 108 1001-1114 24-147 (530)
58 1mu5_A Type II DNA topoisomera 99.5 6.4E-14 2.2E-18 165.0 11.5 109 1000-1114 25-148 (471)
59 3h9w_A Diguanylate cyclase wit 99.5 1.6E-13 5.5E-18 129.6 12.0 111 625-739 2-114 (115)
60 3ue6_A Aureochrome1; PAS/LOV d 99.5 8.3E-14 2.9E-18 139.9 10.6 136 731-880 20-158 (166)
61 2vv6_A FIXL, sensor protein FI 99.5 1E-13 3.4E-18 132.0 10.5 114 624-743 1-118 (119)
62 2pr5_A Blue-light photorecepto 99.5 2.5E-13 8.4E-18 131.9 13.3 122 750-887 3-127 (132)
63 4dj2_A Period circadian protei 99.5 8.1E-13 2.8E-17 148.4 18.9 225 621-872 31-281 (320)
64 3f1p_B ARYL hydrocarbon recept 99.5 6.7E-14 2.3E-18 133.5 8.6 115 748-876 4-120 (121)
65 4hia_A LOV protein; PAS, HTH, 99.5 1.5E-13 5.2E-18 140.2 11.7 123 744-880 5-130 (176)
66 3gdi_A Period circadian protei 99.5 1.1E-12 3.6E-17 146.8 18.2 226 621-872 20-270 (309)
67 3luq_A Sensor protein; PAS, hi 99.4 7.8E-13 2.7E-17 123.0 14.1 113 615-732 2-114 (114)
68 3nja_A Probable ggdef family p 99.4 1.5E-13 5.3E-18 130.0 9.1 124 741-876 2-125 (125)
69 3lyx_A Sensory BOX/ggdef domai 99.4 8.6E-13 2.9E-17 123.3 14.1 120 614-737 5-124 (124)
70 3mqq_A Transcriptional regulat 99.4 3E-13 1E-17 128.7 10.3 115 617-737 4-119 (120)
71 2v0u_A NPH1-1, LOV2; kinase, t 99.4 7.9E-13 2.7E-17 127.7 13.3 135 618-757 4-141 (146)
72 4eet_B Phototropin-2; LOV, blu 99.4 1E-12 3.5E-17 122.2 13.6 111 621-735 2-115 (115)
73 2z6d_A Phototropin-2; PAS-fold 99.4 1.3E-12 4.6E-17 122.9 14.4 124 613-740 3-129 (130)
74 1d06_A Nitrogen fixation regul 99.4 4.8E-13 1.6E-17 129.5 11.4 125 732-872 2-130 (130)
75 2r78_A Sensor protein; sensory 99.4 1.3E-12 4.5E-17 124.3 13.2 113 610-732 5-117 (117)
76 3icy_A Sensor protein; sensory 99.4 8.5E-13 2.9E-17 124.0 11.4 115 614-732 2-118 (118)
77 1n9l_A PHOT-LOV1, putative blu 99.4 2E-12 7E-17 121.4 13.4 105 625-733 2-109 (109)
78 3eeh_A Putative light and redo 99.4 1.3E-12 4.3E-17 122.8 11.0 121 607-732 2-125 (125)
79 3f1p_A Endothelial PAS domain- 99.4 3.7E-13 1.3E-17 127.4 6.6 105 761-876 11-116 (117)
80 3h9w_A Diguanylate cyclase wit 99.4 1.1E-12 3.6E-17 123.9 9.5 109 761-879 5-114 (115)
81 3t50_A Blue-light-activated hi 99.4 1.9E-12 6.4E-17 123.8 10.9 119 751-883 2-123 (128)
82 3bwl_A Sensor protein; structu 99.4 1.6E-12 5.5E-17 124.3 10.4 124 730-872 1-126 (126)
83 3bwl_A Sensor protein; structu 99.4 8.4E-12 2.9E-16 119.3 15.2 121 603-732 4-126 (126)
84 1v9y_A Heme PAS sensor protein 99.4 1.9E-12 6.5E-17 129.5 11.0 137 605-743 29-165 (167)
85 3icy_A Sensor protein; sensory 99.4 2.1E-12 7.2E-17 121.2 10.2 117 744-872 2-118 (118)
86 2kdk_A ARYL hydrocarbon recept 99.3 6.6E-12 2.3E-16 119.1 12.7 112 620-735 7-120 (121)
87 3mjq_A Uncharacterized protein 99.3 2.4E-12 8.4E-17 122.1 9.5 120 619-745 2-121 (126)
88 3k3c_A Protein RV1364C/MT1410; 99.3 3.5E-12 1.2E-16 127.4 10.9 128 742-885 13-146 (158)
89 3eeh_A Putative light and redo 99.3 4.7E-12 1.6E-16 118.8 11.2 124 736-872 1-125 (125)
90 2wkq_A NPH1-1, RAS-related C3 99.3 7.2E-12 2.5E-16 142.3 14.6 120 620-743 15-137 (332)
91 3sw1_A Sensory box protein; li 99.3 3.4E-12 1.2E-16 127.6 10.4 130 744-887 23-155 (162)
92 1n9l_A PHOT-LOV1, putative blu 99.3 5.4E-12 1.8E-16 118.4 9.6 102 761-873 5-109 (109)
93 2r78_A Sensor protein; sensory 99.3 6.8E-12 2.3E-16 119.3 10.2 114 739-872 4-117 (117)
94 3lyx_A Sensory BOX/ggdef domai 99.3 8.9E-12 3E-16 116.3 10.6 120 743-876 4-123 (124)
95 2q2e_B Type 2 DNA topoisomeras 99.3 2.4E-12 8.2E-17 155.1 6.7 106 1000-1114 30-154 (621)
96 3mqq_A Transcriptional regulat 99.3 2.7E-12 9.3E-17 122.0 5.8 116 747-877 4-119 (120)
97 4eet_B Phototropin-2; LOV, blu 99.3 1.4E-11 4.7E-16 114.5 10.0 110 751-874 2-114 (115)
98 2vv6_A FIXL, sensor protein FI 99.3 1.6E-11 5.3E-16 116.6 10.4 110 761-883 5-118 (119)
99 3luq_A Sensor protein; PAS, hi 99.3 1.2E-11 3.9E-16 115.0 9.3 113 745-872 2-114 (114)
100 3olo_A Two-component sensor hi 99.3 2.8E-11 9.5E-16 113.4 11.8 111 611-732 8-118 (118)
101 1v9y_A Heme PAS sensor protein 99.2 1.1E-11 3.7E-16 124.0 9.1 144 725-884 19-166 (167)
102 2v0u_A NPH1-1, LOV2; kinase, t 99.2 1.8E-11 6E-16 118.1 9.7 117 748-878 4-123 (146)
103 2z6d_A Phototropin-2; PAS-fold 99.2 1.7E-11 5.8E-16 115.2 9.3 123 743-879 3-128 (130)
104 3vol_A Aerotaxis transducer AE 99.2 6.8E-11 2.3E-15 127.5 14.9 152 614-793 20-184 (233)
105 3fc7_A HTR-like protein, senso 99.2 1.6E-11 5.5E-16 116.5 6.9 108 614-732 17-125 (125)
106 2qkp_A Uncharacterized protein 99.2 1.3E-10 4.6E-15 116.2 14.0 123 616-745 19-144 (151)
107 3mxq_A Sensor protein; PSI2, M 99.2 1.4E-11 4.7E-16 123.5 6.6 124 739-877 15-150 (152)
108 3ewk_A Sensor protein; PAS dom 99.2 1E-10 3.5E-15 125.2 13.8 111 616-730 111-227 (227)
109 2wkq_A NPH1-1, RAS-related C3 99.2 5.5E-11 1.9E-15 135.0 11.1 118 750-881 15-135 (332)
110 2l0w_A Potassium voltage-gated 99.1 3.5E-10 1.2E-14 107.8 13.9 113 618-734 21-138 (138)
111 3mjq_A Uncharacterized protein 99.1 1E-10 3.5E-15 110.8 8.4 118 749-883 2-119 (126)
112 3kx0_X Uncharacterized protein 99.1 3.6E-11 1.2E-15 124.3 5.5 123 742-880 33-161 (185)
113 3p01_A Two-component response 99.1 1.1E-09 3.9E-14 113.0 16.4 152 200-396 28-179 (184)
114 1byw_A Protein (human ERG pota 99.1 8.6E-10 3E-14 100.2 13.4 104 627-734 2-110 (110)
115 2kdk_A ARYL hydrocarbon recept 99.1 1.7E-10 5.8E-15 109.2 8.2 110 751-874 8-119 (121)
116 3mfx_A Sensory BOX/ggdef famil 99.1 2.7E-10 9.2E-15 110.9 9.2 115 616-733 7-124 (129)
117 4hi4_A Aerotaxis transducer AE 99.1 1.1E-09 3.8E-14 104.5 13.3 106 615-734 4-121 (121)
118 3fg8_A Uncharacterized protein 99.1 6.2E-11 2.1E-15 112.7 4.2 114 609-734 5-118 (118)
119 3vol_A Aerotaxis transducer AE 99.0 6.7E-10 2.3E-14 119.7 12.1 122 744-889 20-153 (233)
120 4f3l_A Mclock, circadian locom 99.0 3.6E-10 1.2E-14 130.1 10.6 109 626-738 251-360 (361)
121 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 3.5E-10 1.2E-14 131.3 10.3 108 625-736 277-386 (387)
122 3olo_A Two-component sensor hi 99.0 3.2E-10 1.1E-14 106.1 8.1 114 738-872 5-118 (118)
123 2vlg_A Sporulation kinase A; h 99.0 7.2E-10 2.5E-14 104.8 9.8 95 620-721 3-97 (111)
124 3d72_A Vivid PAS protein VVD; 99.0 4.8E-10 1.6E-14 110.3 8.0 123 725-870 13-149 (149)
125 3d72_A Vivid PAS protein VVD; 99.0 1.3E-09 4.3E-14 107.3 11.0 105 621-730 31-149 (149)
126 4eho_A Bacteriophytochrome, PA 99.0 4E-11 1.4E-15 148.0 -0.9 122 742-878 514-635 (635)
127 2ykf_A Pdtas, probable sensor 98.5 6.1E-11 2.1E-15 133.0 0.0 170 707-901 111-305 (305)
128 3b33_A Sensor protein; structu 99.0 2E-09 6.8E-14 100.8 10.0 105 619-732 10-115 (115)
129 1byw_A Protein (human ERG pota 98.9 2.5E-09 8.6E-14 97.0 9.0 103 761-873 3-109 (110)
130 2zmf_A CAMP and CAMP-inhibited 98.9 2.2E-08 7.6E-13 102.7 17.2 154 203-396 14-176 (189)
131 2l0w_A Potassium voltage-gated 98.9 3.7E-09 1.3E-13 100.6 10.5 113 748-873 21-137 (138)
132 3a0r_A Sensor protein; four he 98.9 7.8E-10 2.7E-14 126.1 5.0 124 611-745 3-127 (349)
133 2vlg_A Sporulation kinase A; h 98.9 7.8E-09 2.7E-13 97.6 10.5 94 750-860 3-96 (111)
134 1ll8_A PAS kinase; PAS domain, 98.9 1.2E-09 4.2E-14 102.5 4.9 103 624-732 6-113 (114)
135 3cax_A Uncharacterized protein 98.9 8.5E-09 2.9E-13 118.8 13.0 115 616-740 239-353 (369)
136 3oov_A Methyl-accepting chemot 98.9 5E-08 1.7E-12 98.0 16.8 154 208-396 8-162 (169)
137 1ykd_A Adenylate cyclase; GAF 98.9 3.1E-07 1.1E-11 106.8 25.9 317 205-583 12-374 (398)
138 3k2n_A Sigma-54-dependent tran 98.9 1.1E-07 3.6E-12 96.7 19.4 161 201-397 5-167 (177)
139 3fc7_A HTR-like protein, senso 98.8 2.3E-09 7.8E-14 101.4 5.7 108 744-872 17-125 (125)
140 2w0n_A Sensor protein DCUS; si 98.8 1.2E-09 4E-14 102.0 3.0 109 608-732 7-118 (118)
141 3mfx_A Sensory BOX/ggdef famil 98.8 7.8E-09 2.7E-13 100.4 8.9 110 746-872 7-123 (129)
142 3ci6_A Phosphoenolpyruvate-pro 98.8 1.9E-07 6.5E-12 93.3 19.2 155 201-396 9-163 (171)
143 2qyb_A Membrane protein, putat 98.8 5.9E-08 2E-12 99.2 15.3 143 216-397 15-159 (181)
144 3trc_A Phosphoenolpyruvate-pro 98.8 9.2E-08 3.2E-12 96.3 16.5 158 198-396 4-161 (171)
145 2qkp_A Uncharacterized protein 98.8 8.1E-09 2.8E-13 103.2 8.3 119 745-880 18-139 (151)
146 3e0y_A Conserved domain protei 98.8 1.1E-07 3.6E-12 96.7 16.9 149 205-396 18-166 (181)
147 4hi4_A Aerotaxis transducer AE 98.8 1.8E-08 6.1E-13 96.0 9.5 105 746-874 5-121 (121)
148 2e4s_A CAMP and CAMP-inhibited 98.7 1.4E-07 4.8E-12 96.8 16.0 156 201-397 12-177 (189)
149 4dj3_A Period circadian protei 98.7 6.4E-08 2.2E-12 108.4 12.9 123 627-753 175-314 (317)
150 1mc0_A 3',5'-cyclic nucleotide 98.7 1.8E-07 6.3E-12 107.3 16.8 205 202-449 14-222 (368)
151 3fg8_A Uncharacterized protein 98.7 4.3E-09 1.5E-13 99.9 1.8 112 741-874 7-118 (118)
152 2jhe_A Transcription regulator 98.7 1.8E-08 6E-13 104.2 6.6 110 613-736 77-190 (190)
153 3a0s_A Sensor protein; PAS-fol 98.7 2.1E-07 7.3E-12 82.0 12.4 95 625-730 1-96 (96)
154 3ibj_A CGMP-dependent 3',5'-cy 98.6 1.6E-06 5.4E-11 108.5 24.6 205 200-449 13-222 (691)
155 3b33_A Sensor protein; structu 98.6 6.6E-08 2.2E-12 90.3 7.6 105 749-872 10-115 (115)
156 3hcy_A Putative two-component 98.6 2.1E-07 7.1E-12 92.1 11.4 138 216-396 1-139 (151)
157 3rty_A Period circadian protei 98.6 2.9E-07 9.9E-12 104.2 13.4 106 626-735 154-265 (339)
158 3o5y_A Sensor protein; GAF dom 98.5 1.6E-06 5.4E-11 87.9 16.1 139 216-396 3-143 (165)
159 1nwz_A PYP, photoactive yellow 98.5 3.2E-07 1.1E-11 87.5 9.8 102 619-726 20-122 (125)
160 1ll8_A PAS kinase; PAS domain, 98.5 5.5E-08 1.9E-12 91.0 4.1 99 761-872 10-113 (114)
161 2w0n_A Sensor protein DCUS; si 98.5 6E-08 2E-12 90.2 4.3 108 738-872 7-118 (118)
162 1mzu_A PPR; photoactive yellow 98.5 2.6E-07 8.8E-12 88.3 8.6 101 620-726 26-127 (129)
163 1mc0_A 3',5'-cyclic nucleotide 98.5 2.4E-06 8.1E-11 98.0 18.0 149 206-397 185-338 (368)
164 3cax_A Uncharacterized protein 98.4 3.7E-07 1.3E-11 105.1 8.2 114 745-878 238-351 (369)
165 3ke6_A Protein RV1364C/MT1410; 98.4 5.9E-07 2E-11 104.5 9.5 90 1004-1115 294-387 (399)
166 2w3g_A DOSS, two component sen 98.4 2.4E-06 8.1E-11 83.9 12.3 140 216-396 4-145 (153)
167 2ykf_A Pdtas, probable sensor 97.7 6.8E-08 2.3E-12 108.1 0.0 121 620-751 174-303 (305)
168 4dj2_A Period circadian protei 98.3 2E-06 6.8E-11 96.4 11.6 106 626-735 176-284 (320)
169 3gdi_A Period circadian protei 98.3 2.7E-06 9.1E-11 95.0 12.1 103 628-734 167-272 (309)
170 2jhe_A Transcription regulator 98.3 8.1E-07 2.8E-11 91.6 7.1 108 743-875 77-189 (190)
171 2vjw_A GAF-B, GAF family prote 98.2 2.2E-05 7.4E-10 77.9 15.5 128 218-395 1-133 (149)
172 1ykd_A Adenylate cyclase; GAF 98.2 2.2E-05 7.6E-10 91.0 17.9 142 216-397 212-377 (398)
173 3a0s_A Sensor protein; PAS-fol 98.2 3.1E-06 1.1E-10 74.3 8.0 92 761-870 4-96 (96)
174 1mzu_A PPR; photoactive yellow 98.2 4.5E-06 1.5E-10 79.7 8.7 100 750-865 26-126 (129)
175 1nwz_A PYP, photoactive yellow 98.2 5.7E-06 2E-10 78.8 9.4 102 749-866 20-122 (125)
176 1ixm_A SPO0B, protein (sporula 98.1 3.3E-05 1.1E-09 79.8 13.8 141 894-1072 23-169 (192)
177 3na3_A DNA mismatch repair pro 98.0 1.7E-05 5.9E-10 89.1 10.9 78 1007-1101 28-119 (348)
178 3ibj_A CGMP-dependent 3',5'-cy 98.0 6.9E-05 2.4E-09 93.6 16.9 141 217-397 195-338 (691)
179 1h7s_A PMS1 protein homolog 2; 98.0 1.5E-05 5E-10 90.9 9.6 70 1007-1088 34-117 (365)
180 3dba_A CONE CGMP-specific 3',5 97.9 9.8E-05 3.4E-09 75.5 14.5 153 202-394 7-171 (180)
181 1b63_A MUTL; DNA mismatch repa 97.9 2.2E-05 7.5E-10 88.6 9.8 70 1007-1088 24-107 (333)
182 3bjc_A CGMP-specific 3',5'-cyc 97.9 1.7E-06 5.7E-11 111.0 0.0 154 203-396 154-319 (878)
183 1kij_A DNA gyrase subunit B; t 97.9 8.6E-06 2.9E-10 93.7 5.5 77 1002-1092 31-127 (390)
184 3mmh_A FRMSR, methionine-R-sul 97.8 0.00091 3.1E-08 67.5 18.9 146 200-394 14-160 (167)
185 3h4l_A DNA mismatch repair pro 97.7 8E-05 2.7E-09 84.5 9.1 58 1007-1076 25-82 (367)
186 1vhm_A Protein YEBR; structura 97.3 0.0079 2.7E-07 62.1 18.3 139 206-395 33-172 (195)
187 3ksh_A Putative uncharacterize 97.2 0.015 5.3E-07 57.8 18.1 144 201-394 15-159 (160)
188 1f5m_A GAF; CGMP binding, sign 97.1 0.01 3.6E-07 60.4 15.7 145 201-393 25-176 (180)
189 3rfb_A Putative uncharacterize 96.9 0.027 9.4E-07 56.6 16.8 144 200-393 15-159 (171)
190 1qy5_A Endoplasmin; GRP94, NEC 96.8 0.00026 9E-09 76.7 0.6 52 1010-1070 31-96 (269)
191 2wer_A ATP-dependent molecular 96.7 0.00079 2.7E-08 71.2 4.1 53 1010-1071 29-95 (220)
192 1oj5_A Steroid receptor coacti 96.4 0.0042 1.4E-07 58.9 6.4 96 627-727 8-108 (132)
193 1yc1_A HSP 86, heat shock prot 96.4 0.002 6.9E-08 69.7 4.3 71 1010-1089 71-173 (264)
194 3zcc_A HAMP, osmolarity sensor 96.3 0.014 4.8E-07 53.6 9.3 57 888-949 56-113 (114)
195 1s16_A Topoisomerase IV subuni 96.2 0.011 3.9E-07 67.5 9.7 69 1009-1089 33-123 (390)
196 2ior_A Chaperone protein HTPG; 96.2 0.003 1E-07 67.4 4.3 54 1010-1072 50-117 (235)
197 1ei1_A DNA gyrase B, GYRB; ATP 96.1 0.01 3.5E-07 67.9 8.9 71 1007-1089 34-126 (391)
198 1oj5_A Steroid receptor coacti 96.1 0.0097 3.3E-07 56.4 6.8 95 762-868 10-109 (132)
199 3fv5_A DNA topoisomerase 4 sub 95.7 0.015 5.2E-07 60.2 7.1 45 1009-1065 19-65 (201)
200 3bjc_A CGMP-specific 3',5'-cyc 95.7 0.0018 6E-08 83.0 0.0 142 217-396 348-508 (878)
201 4duh_A DNA gyrase subunit B; s 95.4 0.029 1E-06 58.8 8.2 72 1006-1089 34-127 (220)
202 3t0h_A Heat shock protein HSP 95.4 0.014 4.8E-07 61.6 5.8 53 1010-1071 35-101 (228)
203 3cit_A Sensor histidine kinase 95.4 0.17 5.9E-06 49.8 13.0 135 200-397 13-148 (160)
204 4emv_A DNA topoisomerase IV, B 94.8 0.057 1.9E-06 56.8 8.2 73 1004-1088 37-130 (226)
205 1zxm_A TOPO IIA ATPase, DNA to 94.6 0.076 2.6E-06 60.8 9.2 72 1006-1088 51-145 (400)
206 3o0i_A HSP90AA1 protein; HSP90 94.6 0.029 1E-06 59.9 5.3 51 1010-1069 63-127 (256)
207 3cwv_A DNA gyrase, B subunit, 94.5 0.063 2.1E-06 60.9 8.1 49 1004-1064 27-77 (369)
208 2gqp_A Endoplasmin; GRP94, HSP 94.1 0.02 6.8E-07 60.9 2.6 53 1010-1071 35-101 (236)
209 3ttz_A DNA gyrase subunit B; p 94.0 0.16 5.3E-06 52.4 9.1 49 1004-1064 28-78 (198)
210 1pvg_A DNA topoisomerase II; G 93.9 0.13 4.6E-06 59.1 9.3 72 1006-1088 63-157 (418)
211 3zrx_A AF1503 protein, osmolar 93.9 0.28 9.4E-06 44.5 10.0 56 890-950 58-114 (115)
212 3peh_A Endoplasmin homolog; st 93.7 0.033 1.1E-06 60.1 3.5 49 1010-1067 49-111 (281)
213 2cg9_A ATP-dependent molecular 93.6 0.044 1.5E-06 66.4 4.6 52 1010-1070 29-94 (677)
214 3lnu_A Topoisomerase IV subuni 93.0 0.15 5E-06 58.3 7.6 68 1009-1088 52-141 (408)
215 1y4s_A Chaperone protein HTPG; 92.7 0.11 3.9E-06 61.8 6.3 50 1010-1070 30-95 (559)
216 3nmq_A Heat shock protein HSP 90.8 0.13 4.3E-06 54.4 3.4 48 1010-1066 42-103 (239)
217 2ioq_A Chaperone protein HTPG; 89.1 0.3 1E-05 59.0 5.2 49 1010-1069 30-94 (624)
218 2o1u_A Endoplasmin; GRP94, HSP 88.8 0.37 1.3E-05 58.4 5.8 58 1001-1070 42-113 (666)
219 3ied_A Heat shock protein; HSP 88.0 0.16 5.5E-06 53.8 1.7 21 1050-1070 131-151 (272)
220 2ool_A Sensor protein; bacteri 81.5 1.8 6.2E-05 48.2 6.4 50 627-676 42-93 (337)
221 4dah_A Sporulation kinase D; a 80.4 6.2 0.00021 40.4 9.9 125 613-778 55-181 (217)
222 3szt_A QCSR, quorum-sensing co 79.0 34 0.0012 35.6 15.3 128 207-372 8-135 (237)
223 3eea_A GAF domain/HD domain pr 78.6 43 0.0015 31.6 13.3 139 218-396 13-156 (162)
224 1p0z_A Sensor kinase CITA; tra 73.5 19 0.00065 33.7 10.3 77 627-733 51-127 (131)
225 2w1r_A Spovt, stage V sporulat 70.5 9.4 0.00032 35.7 7.2 119 223-395 4-122 (123)
226 3e4o_A C4-dicarboxylate transp 69.5 42 0.0014 36.5 13.4 121 615-777 101-222 (305)
227 3lif_A Putative diguanylate cy 66.6 51 0.0018 34.1 13.1 123 614-776 56-183 (254)
228 4gfh_A DNA topoisomerase 2; to 65.6 5.6 0.00019 51.6 5.9 71 1007-1088 59-152 (1177)
229 3by8_A Sensor protein DCUS; hi 59.0 25 0.00084 33.5 7.9 78 627-735 57-134 (142)
230 3qp6_A CVIR transcriptional re 52.0 2.3E+02 0.008 29.7 15.8 135 200-369 20-158 (265)
231 4e04_A Bacteriophytochrome (li 45.1 10 0.00036 41.7 2.9 46 629-674 32-77 (327)
232 3nhq_A Bacteriophytochrome; ph 44.9 9.4 0.00032 44.9 2.6 39 205-245 323-361 (505)
233 1p0z_A Sensor kinase CITA; tra 43.4 24 0.00084 32.9 5.0 27 846-872 100-126 (131)
234 3by9_A Sensor protein; histidi 43.3 2.7E+02 0.0092 28.3 13.9 108 627-776 73-180 (260)
235 4ew7_A Conjugative transfer: r 43.0 38 0.0013 30.1 5.5 41 618-658 22-62 (127)
236 4dah_A Sporulation kinase D; a 40.9 32 0.0011 34.8 5.8 95 744-872 56-150 (217)
237 3e98_A GAF domain of unknown f 40.1 1.5E+02 0.0051 31.2 10.9 43 204-248 105-147 (252)
238 3lmm_A Uncharacterized protein 36.7 51 0.0018 39.4 7.4 94 1010-1115 299-409 (583)
239 3by8_A Sensor protein DCUS; hi 35.0 80 0.0027 29.8 7.2 27 847-873 106-132 (142)
240 3s7o_A Bacteriophytochrome; bi 34.8 19 0.00066 39.8 3.0 45 629-674 55-100 (343)
241 3c8c_A Methyl-accepting chemot 32.0 1.8E+02 0.0061 29.0 10.0 56 706-775 118-175 (240)
242 4ew7_A Conjugative transfer: r 30.1 3E+02 0.01 24.5 11.4 38 745-785 19-56 (127)
243 3lid_A Putative sensory BOX/gg 29.8 1.5E+02 0.0051 31.8 9.2 135 611-776 62-205 (295)
244 3pxp_A Helix-turn-helix domain 24.7 1.2E+02 0.004 32.8 7.0 38 613-650 96-133 (292)
245 2hje_A Autoinducer 2 sensor ki 24.1 2.7E+02 0.0092 28.4 8.9 96 621-742 57-153 (221)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=5e-120 Score=1120.82 Aligned_cols=603 Identities=28% Similarity=0.447 Sum_probs=534.9
Q ss_pred hhccCCCCCCCceeEEEEecCCceEEEEccChhhhhcCCcCCCCCCCCCCccCCCCchhhhcChhHHHHHHHHhccCCcc
Q 001235 72 HHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASALQKALGFGEVS 151 (1117)
Q Consensus 72 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~~ 151 (1117)
+|||+||+|||||||||+|+++++|+++|+|+.++||.++ ++|+++.+++++.....+..... ..
T Consensus 23 EpIh~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~------------~lg~~l~~~~~~~~~~~~~~~~~---~~ 87 (635)
T 4eho_A 23 EEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGS------------VLGVPLAEIDGDLLIKILPHLDP---TA 87 (635)
T ss_dssp CBCSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCSC------------CSSCBSSSSSSSHHHHHGGGCCS---SS
T ss_pred ccccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcHh------------hhCCCHHHHcchHHHHHHhhhhh---hc
Confidence 6899999999999999999999999999999999999743 58999999999887776654322 12
Q ss_pred ccCcEEEEec--CCCCeEEEEEEee-CCeEEEEeeecCCCCCcchhhhhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 001235 152 LLNPILVHCK--TSGKPFYAIVHRV-TGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQ 228 (1117)
Q Consensus 152 ~~~~~~~~~~--~~~~~f~~~~hr~-~~~~~~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (1117)
..+|+.++++ ..++.|++++||. ++.+|+||||..+.. .+.+ ++.++|+||++ ++|+++||+++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~---~~~~------~~~~~~~~i~~--s~~l~~i~~~~v~ 156 (635)
T 4eho_A 88 EGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPI---DLSG------TLAPALERIRT--AGSLRALCDDTAL 156 (635)
T ss_dssp CCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCC---CCCT------TSSSHHHHHHH--CCSHHHHHHHHHH
T ss_pred cCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCch---hHHH------HHHHHHHHHHh--hCCHHHHHHHHHH
Confidence 3346666554 4577899999994 678999999986532 2222 34578999999 8899999999999
Q ss_pred HHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCccccccc--CCCC
Q 001235 229 EVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQ--DEKL 306 (1117)
Q Consensus 229 ~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~--~~~~ 306 (1117)
|||++|||||||||||++||||+||||++.++|+||||+|||++|||+++|+||++|++|+|+||+++|||++| ++.+
T Consensus 157 evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~v~~~~~~~~~~ 236 (635)
T 4eho_A 157 LFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVPLEPRLSPLT 236 (635)
T ss_dssp HHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCEEEESCSSCCCEEEESSBCTTT
T ss_pred HHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCeEEEecccCCccccccCcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 5778
Q ss_pred CCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCCCchhHHHHHHH
Q 001235 307 PFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFL 386 (1117)
Q Consensus 307 ~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~~~~~r~~~~~l 386 (1117)
++|+|||+|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++|.+|++|
T Consensus 237 ~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~--------------~~LWGLl~~h~~~pr~~~~~~~~~~~~l 302 (635)
T 4eho_A 237 GRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVG--------------GKLWGLVACHHYLPRFIHFELRAICELL 302 (635)
T ss_dssp SSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEET--------------TEEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred CCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEc--------------ceeeeeeeeecCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CcccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHH
Q 001235 387 AQVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRDA--PLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQL 464 (1117)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~a~~~~~~~~~~G~~p~~~~~ 464 (1117)
++++|++|+++...+++..+++++++++.+++++.+.. +.++..+.++++++++|||++|++++++|++|.||++.++
T Consensus 303 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~~~G~~P~~~~i 382 (635)
T 4eho_A 303 AEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIGDVPSTQDV 382 (635)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEEEEESCCCHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEEEEeCCCCHHHH
Confidence 99999999988888888888888899999999887643 5778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceEeecccccccCCCccccccccccEEEEEeCC--CCEEEEeccCCccEEeeccCCCCCCCC-CCC
Q 001235 465 HDIVSWLSEYHMDSTGLSADSLYDAGYLGALALGDVVCGMAAVRISP--KDMIFWFRSQTASEVRWGGAKHEPDEK-DDG 541 (1117)
Q Consensus 465 ~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~~~~--~~~l~wfR~e~~~~v~W~G~p~~~~~~-~~g 541 (1117)
.+|+.|+...+.+ .+|+|++|.. +||++..+++.+|||++++|+. ++|++|||+|+.++|+|||+|+|+... ++|
T Consensus 383 ~~l~~wl~~~~~~-~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~p~~~~~~~~~~ 460 (635)
T 4eho_A 383 REIAGWLDRQPRA-AVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKKPFTMGDTP 460 (635)
T ss_dssp HHHHHHHTTSCCC-SSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSCCSCCCCSCCSG
T ss_pred HHHHHHHHhcCCC-cEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccCCCCccccCCCc
Confidence 9999999877554 7899999986 6999999999999999999986 599999999999999999999999765 456
Q ss_pred CcccccchhhhhhhhhccccCCCchHHHHHHHHHHHHHHHHHhhhccccccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001235 542 RKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDVGTLDLDTKSIHSKLCDLKIEGMKELEAVTSEMVRL 621 (1117)
Q Consensus 542 ~~l~PR~SF~~w~e~v~~~s~pW~~~El~aa~sL~liL~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~eL~~~~~~l~~l 621 (1117)
.+|+||+||++|++++++++.||...|++++..++..+........ .+...++++..+++.++
T Consensus 461 ~~l~PR~SF~~w~e~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~r-----------------~~~~~~a~e~~~~~~~l 523 (635)
T 4eho_A 461 ADLSPRRSFAKWHQVVEGTSDPWTAADLAAAGTIGQTVADIVLQFR-----------------AVRTLIAREQVPQASSQ 523 (635)
T ss_dssp GGCSHHHHHHHHHHTTTTCCSCCCTTHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHTSSSHHHH
T ss_pred ceecceeeeecccceeeecccccchhhhHHHHhhhhhHHHHHHHHh-----------------HHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999998666554442211 11222334444568889
Q ss_pred HHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccC
Q 001235 622 IETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKIN 701 (1117)
Q Consensus 622 ie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~d 701 (1117)
+++++++++++|.+|+|++||+++++++||+.++++|++....+++++.+.+...+..+..|+.. ..+++ .+++|
T Consensus 524 le~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~~g~~~-~~E~~----~~~~d 598 (635)
T 4eho_A 524 VHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELIDHGRGW-RGEVL----LRGAG 598 (635)
T ss_dssp HHHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHHHCCCB-CCCCE----ECCSS
T ss_pred HHhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHHcCCcE-EEEEE----EEccC
Confidence 99999999999999999999999999999999999999999999999999988888777777643 23433 34789
Q ss_pred CceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhh
Q 001235 702 DDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVM 738 (1117)
Q Consensus 702 G~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE 738 (1117)
|+.+|+.++++|++|.+|+++|++++++|||+||++|
T Consensus 599 G~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 599 NRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp SSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred CcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 9999999999999999999999999999999999976
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=3.1e-115 Score=1026.59 Aligned_cols=481 Identities=31% Similarity=0.584 Sum_probs=437.1
Q ss_pred hhhccCCCCCCCceeEEEEecCCceEEEEccChhhhhcCCcCCCCCCCCCCccCCCCchhhhcChhHHHHHHHHhccCCc
Q 001235 71 LHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASALQKALGFGEV 150 (1117)
Q Consensus 71 ~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~ 150 (1117)
-+|||+||+|||||||||+|+++++|+|+|+|+.++||+++++ ++|+++.++|++..++.+++++...+.
T Consensus 17 rEPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~l~~~l~~~~~ 86 (520)
T 3zq5_A 17 TLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPED----------LLGRTLGEVFDSFQIDPIQSRLTAGQI 86 (520)
T ss_dssp TCCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCHHH----------HTTSBHHHHCEESSCCCCSSCCCHHHH
T ss_pred cccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHcCHHHHHHHHHHhccccc
Confidence 4799999999999999999999999999999999999998754 699999999999888888776655444
Q ss_pred cccCcEEEEec--CCCC-eEEEEEEee-CCeEEEEeeecCCCCCcchhhhhhHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 001235 151 SLLNPILVHCK--TSGK-PFYAIVHRV-TGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTM 226 (1117)
Q Consensus 151 ~~~~~~~~~~~--~~~~-~f~~~~hr~-~~~~~~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (1117)
...+|+.++++ .+++ .|++++||+ ++++||||||..+.+.. +....++++.+++.+|++ +++++++|+++
T Consensus 87 ~~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--sl~l~~il~~~ 160 (520)
T 3zq5_A 87 SSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--QANLRDFYDVI 160 (520)
T ss_dssp HHTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred ccCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--cCCHHHHHHHH
Confidence 56789988764 3455 799999999 99999999999654421 223578999999999999 78999999999
Q ss_pred HHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCccccccc--CC
Q 001235 227 IQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQ--DE 304 (1117)
Q Consensus 227 ~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~--~~ 304 (1117)
|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||.+|++|+|+|++++||||+| ++
T Consensus 161 v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~pv~l~~~~~~ 240 (520)
T 3zq5_A 161 VEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNP 240 (520)
T ss_dssp HHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCCCEEEESSSCT
T ss_pred HHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCCceeeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 46
Q ss_pred CCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCCCchhHHHHH
Q 001235 305 KLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYACE 384 (1117)
Q Consensus 305 ~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~~~~~r~~~~ 384 (1117)
.++.|+||++|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++|.+|+
T Consensus 241 ~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~--------------~~LWGLl~~Hh~~pR~w~~~er~~~e 306 (520)
T 3zq5_A 241 STNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKD--------------GHLWGLIACHHQTPKVIPFELRKACE 306 (520)
T ss_dssp TTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEET--------------TEEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred ccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEEC--------------CEEEEEEEEecCCCcCCCHHHHHHHH
Confidence 7889999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-CcccccCCcchhhhccCCEEEEEECCeEEEecCCCCHH
Q 001235 385 FLAQVFAIHVNKELELEYQILEKNILRTQT-LLCDMLMRDA-PLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDF 462 (1117)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~a~~~~~~~~~~G~~p~~~ 462 (1117)
++++++|++|++..+++....+++..++++ +++.|...++ +.++..+.++||+|++|||+||+++|+++++|.||+++
T Consensus 307 ~la~~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~~~G~~P~~~ 386 (520)
T 3zq5_A 307 FFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEK 386 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEEEEESCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEEEcCCCCCHH
Confidence 999999999998877776666666666554 4566766655 57888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCceEeecccccccCCCccccccccccEEEEEeCCCCEEEEeccCCccEEeeccCCCCCCC--CCC
Q 001235 463 QLHDIVSWLSEYHMDSTGLSADSLYDAGYLGALALGDVVCGMAAVRISPKDMIFWFRSQTASEVRWGGAKHEPDE--KDD 540 (1117)
Q Consensus 463 ~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~~~~~~~l~wfR~e~~~~v~W~G~p~~~~~--~~~ 540 (1117)
++++|++||..++.+ ++|+||+|++ +||++..+++.+|||||++|+.++||+|||+|+.++|+|||+|+|++. .++
T Consensus 387 ~i~~l~~wl~~~~~~-~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~ 464 (520)
T 3zq5_A 387 AVQYLLQWLENREVQ-DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQED 464 (520)
T ss_dssp HHHHHHHHHHHSCCC-SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGGGCSEEEEET
T ss_pred HHHHHHHHHHhcCCC-CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCCCcCCcCCCC
Confidence 999999999988776 6999999998 699999999999999999999999999999999999999999999975 336
Q ss_pred CC-cccccchhhhhhhhhccccCCCchHHHHHHHHHHHHHHHHH
Q 001235 541 GR-KMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAF 583 (1117)
Q Consensus 541 g~-~l~PR~SF~~w~e~v~~~s~pW~~~El~aa~sL~liL~~~l 583 (1117)
|. +|+||+||++|+|+|+++|.||+..|++++.+|+..+.+.+
T Consensus 465 g~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~vv 508 (520)
T 3zq5_A 465 GKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLI 508 (520)
T ss_dssp TEEEEECCCCCCCEEEEECSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhhhhheeeecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 75 89999999999999999999999999999999966655544
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=2.8e-112 Score=1000.05 Aligned_cols=469 Identities=28% Similarity=0.437 Sum_probs=425.9
Q ss_pred hhhccCCCCCCCceeEEEEecCCceEEEEccChhhhhcCCcCCCCCCCCCCccCCCCchhh-hcChhHHHHHHHHhccCC
Q 001235 71 LHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKT-IFTAPSASALQKALGFGE 149 (1117)
Q Consensus 71 ~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~l~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~l~~~~~~~~ 149 (1117)
-+|||+||+|||||||||+|+ +++|+|+|+|++++||+++ ++|+++.+ +|++..++++++++....
T Consensus 14 ~EPIh~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~------------~lG~~l~~~ll~~~~~~~l~~~l~~~~ 80 (505)
T 3nhq_A 14 DEPIHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA------------SPGSYLTQEQVGPEVLRMLEEGLTGNG 80 (505)
T ss_dssp GCCTTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC------------CTTCBCCHHHHHHHHHHHHHHHHSCSS
T ss_pred cccccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc------------ccCCchhhhhCCHHHHHHHHHHhhccc
Confidence 368999999999999999999 8999999999999999865 58999999 999999999999887655
Q ss_pred ccccCcEEEEecCCCCeEEEEEEeeCCeEEEEeeecCCCCCcchhhhhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 001235 150 VSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQE 229 (1117)
Q Consensus 150 ~~~~~~~~~~~~~~~~~f~~~~hr~~~~~~~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (1117)
. ..+|+.++ .++++|++++||+++++|+||||..+.+. ...+.++++.+++++|++ ++|++++|+++|+|
T Consensus 81 ~-~~~p~~~~--~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~~Ir~--sl~l~~il~~~v~e 150 (505)
T 3nhq_A 81 P-WSNSVETR--IGEHLFDVIGHSYKEVFYLEFEIRTADTL-----SITSFTLNAQRIIAQVQL--HNDTASLLSNVTDE 150 (505)
T ss_dssp C-CCCEEEEC--SSSSCEEEEEEEETTEEEEEEEECCSCCC-----CSHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred c-cCCcEEEe--cCCceEEEEEEEECCEEEEEEEEcCCccc-----chHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 4 67888884 56789999999999999999999865432 124688999999999999 77999999999999
Q ss_pred HHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCcccccccC--CCCC
Q 001235 230 VFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQD--EKLP 307 (1117)
Q Consensus 230 vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~~--~~~~ 307 (1117)
||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++|+|+|+++.|||++|. +.++
T Consensus 151 vr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~ 230 (505)
T 3nhq_A 151 LRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETN 230 (505)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHCSEEEESCTTCCCEEEESSEETTTT
T ss_pred HHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHcCCEEEEcCCCCCccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 6778
Q ss_pred CcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCCCchhHHHHHHHH
Q 001235 308 FDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLA 387 (1117)
Q Consensus 308 ~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~~~~~r~~~~~l~ 387 (1117)
.|+||++|+|||+||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++|.+|++++
T Consensus 231 ~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~--------------~~LWGLl~~Hh~~pR~w~~~er~~~e~la 296 (505)
T 3nhq_A 231 ESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVG--------------GKLWGLFSCHHMSPKLIPYPVRMSFQIFS 296 (505)
T ss_dssp EECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECS--------------SSEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CcccccccccccCCHHHHHHHHhcCCceEEEEEEEEC--------------CEEEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCcccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHH
Q 001235 388 QVFAIHVNKELELEYQILEKNILRTQTLLCDMLMRD--APLGIVTQSPNIMDLVKCDGAALLYKNKIWRLGVTPNDFQLH 465 (1117)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~g~a~~~~~~~~~~G~~p~~~~~~ 465 (1117)
+++|++|++....+.+..++++.++++.+++++.++ .+.++..+.+++++|++|||+|||++|+++++|.||++++++
T Consensus 297 ~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~~~~~~G~~P~~~~i~ 376 (505)
T 3nhq_A 297 QVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGN 376 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETTEEEEESSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECCeEEecCCCCCHHHHH
Confidence 999999998888888778888888888888887754 356788899999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceEeecccccccCCCccc---cccccccEEEEEeCC--CCEEEEeccCCccEEeeccCCCCCCC-CC
Q 001235 466 DIVSWLSEYHMDSTGLSADSLYDAGYLGALA---LGDVVCGMAAVRISP--KDMIFWFRSQTASEVRWGGAKHEPDE-KD 539 (1117)
Q Consensus 466 ~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~---~~~~~~g~l~~~~~~--~~~l~wfR~e~~~~v~W~G~p~~~~~-~~ 539 (1117)
+|++||..++.+ +|+|| +||++.+ +++.+|||||++|+. ++||+|||+|+.++|+|||||+|++. .+
T Consensus 377 ~l~~wl~~~~~~--v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~ 449 (505)
T 3nhq_A 377 VLQRLQRDPERD--IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGP 449 (505)
T ss_dssp HHHHHHTCTTCS--EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCSEEEEESCCCCCCCCT
T ss_pred HHHHHHHhcCCC--eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceEEEeCCCCCCcCCCCC
Confidence 999999988665 99999 5999988 899999999999986 79999999999999999999999976 45
Q ss_pred CCCcccccchhhhhhhhhccccCCCchHHHHHHHHHHHHHHHHH
Q 001235 540 DGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAF 583 (1117)
Q Consensus 540 ~g~~l~PR~SF~~w~e~v~~~s~pW~~~El~aa~sL~liL~~~l 583 (1117)
+|.+|+||+||++|+|+|+++|.||+..|++++..|+..+.+.+
T Consensus 450 ~~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~v~ 493 (505)
T 3nhq_A 450 SGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELC 493 (505)
T ss_dssp TCGGGSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCchhhhhhheeeecCccCCCCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999966555543
No 4
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=7e-81 Score=690.45 Aligned_cols=295 Identities=34% Similarity=0.544 Sum_probs=273.6
Q ss_pred hhccCCCCCCCceeEEEEecCCceEEEEccChhhhhcCCcCCCCCCCCCCccCCCCchhhhcChhHHHHHHHHhccCCcc
Q 001235 72 HHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASALQKALGFGEVS 151 (1117)
Q Consensus 72 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~~ 151 (1117)
+|||+||+|||||||||+| ++++|+|+|+|++++||+++++ ++|+++.++|++..++++++++......
T Consensus 18 EpIh~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~~~----------~lG~~l~~ll~~~~~~~l~~~l~~~~~~ 86 (327)
T 4e04_A 18 EPIHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAIGA----------LIGRSAADVFDSETHNRLTIALAEPGAA 86 (327)
T ss_dssp CCTTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCHHH----------HTTCBHHHHBCHHHHHHHHHHHHSCSCC
T ss_pred ccccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCChHh----------hcCCCHHHHcCHHHHHHHHHHhhccccc
Confidence 6899999999999999999 8999999999999999998754 6999999999999999999998876666
Q ss_pred ccCcEEEEec--CCCCeEEEEEEeeCCeEEEEeeecCCCCCcchhhhhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 001235 152 LLNPILVHCK--TSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQE 229 (1117)
Q Consensus 152 ~~~~~~~~~~--~~~~~f~~~~hr~~~~~~~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (1117)
..+|+.+++. .+++.|++++||+++.+|+||||..... .+ ....++++.+++.||++ ++|+++||+++|+|
T Consensus 87 ~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~--~~---~~~~~~ll~~i~~rIr~--sldl~~il~~av~e 159 (327)
T 4e04_A 87 VGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDV--RY---PQAFFRSVRSAIRRLQA--AETLESACAAAAQE 159 (327)
T ss_dssp SEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCS--SC---CCCHHHHHHHHHHHHHH--CCSHHHHHHHHHHH
T ss_pred cCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCcc--cc---hHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 7889998743 4577999999999999999999983322 11 12478999999999999 77999999999999
Q ss_pred HHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCccccccc--CCCCC
Q 001235 230 VFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQ--DEKLP 307 (1117)
Q Consensus 230 vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~--~~~~~ 307 (1117)
||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++|+|+|+++.|||++| ++.++
T Consensus 160 vr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~l~~~~~~~~~ 239 (327)
T 4e04_A 160 VREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTG 239 (327)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCCCTTTS
T ss_pred HHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCEEEEeCCCCCccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 46789
Q ss_pred CcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCCCchhHHHHHHHH
Q 001235 308 FDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLA 387 (1117)
Q Consensus 308 ~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~~~~~r~~~~~l~ 387 (1117)
+|+||++|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++|.+|++|+
T Consensus 240 ~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~--------------~~LWGLl~~Hh~~pR~w~~~er~~~e~la 305 (327)
T 4e04_A 240 RPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRG--------------ERLWGLIACHHRKPNYVDLEVRQACELVA 305 (327)
T ss_dssp SCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEET--------------TEEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CcccccccccccCCHHHHHHHHHhCCcEEEEEEEEEC--------------CEEEEEEEEecCCCcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001235 388 QVFAIHVNKEL 398 (1117)
Q Consensus 388 ~~~~~~~~~~~ 398 (1117)
+++|++|++..
T Consensus 306 ~~lsiaI~~~~ 316 (327)
T 4e04_A 306 QVLAWQIGVME 316 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997643
No 5
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=2.8e-81 Score=694.24 Aligned_cols=293 Identities=34% Similarity=0.509 Sum_probs=272.2
Q ss_pred hhhccCCCCCCCceeEEEEecCCceEEEEccChhhhhcCCcCCCCCCCCCCccCCCCchhhhcChhHHHHHHHHhccCCc
Q 001235 71 LHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASALQKALGFGEV 150 (1117)
Q Consensus 71 ~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~ 150 (1117)
-+|||+||+|||||||||+|+++++|+|+|+|++++||+++++ ++|+++.++|++ .++++++++...+.
T Consensus 40 ~EPIh~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~-~~~~l~~~l~~~~~ 108 (343)
T 3s7o_A 40 REPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV----------LRGQTLAALLPE-QWPALQAALPPGCP 108 (343)
T ss_dssp GCCTTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCHHH----------HTTCBHHHHSTT-THHHHHHHSCTTCC
T ss_pred cccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHHhH-HHHHHHHHhccccc
Confidence 4789999999999999999999999999999999999998753 799999999999 99999998876666
Q ss_pred cccC---cEEEEecCCCCeEEEEEEeeCCeEEEEeeecCCCCCcchhhhhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 001235 151 SLLN---PILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMI 227 (1117)
Q Consensus 151 ~~~~---~~~~~~~~~~~~f~~~~hr~~~~~~~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (1117)
...+ |+.+. +++.|++++||+++.+|+||||..+.+ .+.++++.+++.||++ ++|+++||+++|
T Consensus 109 ~~~~~~~p~~~~---~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~~ll~~i~~rIr~--sldl~~ilq~tV 175 (343)
T 3s7o_A 109 DALQYRATLDWP---AAGHLSLTVHRVGELLILEFEPTEAWD--------STGPHALRNAMFALES--APNLRALAEVAT 175 (343)
T ss_dssp TTCCEEEEECCS---SSSEEEEEEEEETTEEEEEEEEEC------------CHHHHHHHHHHHHHH--CCSHHHHHHHHH
T ss_pred cccccCCcEEEc---CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Confidence 5666 77663 577999999999999999999986532 1478999999999999 789999999999
Q ss_pred HHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCccccccc--CCC
Q 001235 228 QEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQ--DEK 305 (1117)
Q Consensus 228 ~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~--~~~ 305 (1117)
+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.||+|+| ++.
T Consensus 176 ~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ly~~~~vr~I~Di~~~pv~l~~~~~~~ 255 (343)
T 3s7o_A 176 QTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQ 255 (343)
T ss_dssp HHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESSEETT
T ss_pred HHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHHHHcCCEEEEeccCCCccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 467
Q ss_pred CCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCCCchhHHHHHH
Q 001235 306 LPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEF 385 (1117)
Q Consensus 306 ~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~~~~~r~~~~~ 385 (1117)
++.|+||++|+||++||||++||+||||+|||+|||+++ ++|||||+|||++||+|++++|.+|++
T Consensus 256 ~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~--------------~~LWGLL~~Hh~~pR~w~~~er~~~e~ 321 (343)
T 3s7o_A 256 TNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVG--------------GQLWGLIACHHQTPYVLPPDLRTTLES 321 (343)
T ss_dssp TTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEET--------------TEEEEEEEEEESSCCCCCHHHHHHHHH
T ss_pred cCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEEC--------------CEEEEEEEEEcCCCcCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 001235 386 LAQVFAIHVNKELELE 401 (1117)
Q Consensus 386 l~~~~~~~~~~~~~~~ 401 (1117)
|++++|++|+++++++
T Consensus 322 la~~lsiaI~~~~~~~ 337 (343)
T 3s7o_A 322 LGRLLSLQVQVKEALE 337 (343)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998776554
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=1.1e-77 Score=674.21 Aligned_cols=296 Identities=33% Similarity=0.554 Sum_probs=274.4
Q ss_pred hhccCCCCCCCceeEEEEecCCceEEEEccChhhhhcCCcCCCCCCCCCCccCCCCchhhhcChhHHHHHHHHhccCCcc
Q 001235 72 HHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMVNHAVPSVGDHPVLGIGSDIKTIFTAPSASALQKALGFGEVS 151 (1117)
Q Consensus 72 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~~ 151 (1117)
+|||+||+|||||||||+|+++++|+++|+|+.++||.++++ ++|+++.++|++...+++++++......
T Consensus 31 EpIh~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~l~~~l~~~~~~ 100 (337)
T 2ool_A 31 EPIHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPPAS----------LLNVPIAHYLTAASAARLTHALHGGDPA 100 (337)
T ss_dssp SCTTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCGGG----------GTTCBGGGGBCHHHHHHHHHHHCC----
T ss_pred CcCcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCHHH----------HcCCCHHHHcCHHHHHHHHHHHhcCCcc
Confidence 589999999999999999999999999999999999998854 6899999999999999999998877777
Q ss_pred ccCcEEEEecCC--CCeEEEEEEeeCCeEEEEeeecCCCCCcchhhhhhHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 001235 152 LLNPILVHCKTS--GKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMIQE 229 (1117)
Q Consensus 152 ~~~~~~~~~~~~--~~~f~~~~hr~~~~~~~e~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (1117)
..+|+.+++... +++|++++||+++.+|+||||....+. ..+.++++.+++.||++ ++|++++|+++|+|
T Consensus 101 ~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~~~Ir~--sl~l~~il~~tv~e 172 (337)
T 2ool_A 101 AINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAIRRLQT--AADLPTACWIAASE 172 (337)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHHHHHHT--CCSHHHHHHHHHHH
T ss_pred ccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 789998877543 678999999999999999999865432 34688999999999999 88999999999999
Q ss_pred HHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCcccccccC--CCCC
Q 001235 230 VFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQD--EKLP 307 (1117)
Q Consensus 230 vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~~--~~~~ 307 (1117)
||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.||||+|. +.++
T Consensus 173 vr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~~~~~~~~~~~ 252 (337)
T 2ool_A 173 VRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLVPDINPRLG 252 (337)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCCCTTTC
T ss_pred HHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEEEEEccCCCccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 6789
Q ss_pred CcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCCCchhHHHHHHHH
Q 001235 308 FDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLA 387 (1117)
Q Consensus 308 ~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~~~~~r~~~~~l~ 387 (1117)
+|+||++|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++|.+|++|+
T Consensus 253 ~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~--------------~~LWGLl~~Hh~~pR~w~~~e~~~~e~la 318 (337)
T 2ool_A 253 GPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRD--------------NRLWGMISCHNLTPRFVSYEVRQACELIA 318 (337)
T ss_dssp SSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEET--------------TEEEEEEEEEESSCCCCCHHHHHHHHHHH
T ss_pred CCcccccccccCCCHHHHHHHHHcCccccEEEEEEEC--------------CeeEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001235 388 QVFAIHVNKELE 399 (1117)
Q Consensus 388 ~~~~~~~~~~~~ 399 (1117)
+++|++|++..+
T Consensus 319 ~~l~iai~q~e~ 330 (337)
T 2ool_A 319 QVLTWQIGVLEE 330 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999976543
No 7
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-41 Score=388.35 Aligned_cols=339 Identities=19% Similarity=0.205 Sum_probs=272.6
Q ss_pred HhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHH
Q 001235 741 FTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIV 820 (1117)
Q Consensus 741 L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~ 820 (1117)
+++++++++.+++++++ +|+++|.+|+|++||+++++++||++++++|+++... .+++.. ...
T Consensus 3 l~~~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~-----------~~~~~~---~~~ 65 (349)
T 3a0r_A 3 VEHLRNFSESILESLET---AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL-----------PDFEEI---GSV 65 (349)
T ss_dssp ------CCCSSGGGSSS---EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTS-----------TTTTHH---HHH
T ss_pred hHHHHHHHHHHHhhhcC---eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHC-----------cChhHH---HHH
Confidence 45566778899999999 8999999999999999999999999999999985422 112222 222
Q ss_pred HHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCE-EEEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001235 821 LNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAV-TGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYT 899 (1117)
Q Consensus 821 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v-~g~v~i~~DITerk~~e~el~~~ae~~~~~k~~~la~i 899 (1117)
+......+.+...+ ...+..+|+.++..|+.+.+|.. .|++++++|||++++.++++++.+. ...+..+++.+
T Consensus 66 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~~~--~~~~~~~~~~i 139 (349)
T 3a0r_A 66 AESVFENKEPVFLN----FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRER--LSILGEMTARV 139 (349)
T ss_dssp HHHHHHHCCCCEEE----CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHHHH--HHHHHHHHHHH
T ss_pred HHHHHhcCCceeec----ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 33333333332221 22223457888999999988875 6899999999999988876554332 33456789999
Q ss_pred HhhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHhh-ccccccccCcccceeEEeeHHHHHHHHHHHH
Q 001235 900 KRQIRNPLSGIIFSRKMMEGTEL-GAEQKRLLHTSAQCQRQLHKILDD-SDLDSIIDGYLDLEMVEFTLNEVLVASISQV 977 (1117)
Q Consensus 900 sHEIrnPL~~I~~~~~LL~~~~l-~~~~~~~l~~i~~~~~~l~~ii~d-Ld~skie~g~~~l~~~~~~L~~li~~v~~~~ 977 (1117)
+||+||||++|.++++++..... .+...++++.+....+++..++++ +++++. ...+...++++.+++++++..+
T Consensus 140 ~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 216 (349)
T 3a0r_A 140 AHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLNELIREVYVLF 216 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHHHHHHHHHHHH
Confidence 99999999999999999986533 344578899999999999999999 588883 3456788999999999999999
Q ss_pred HhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeEEEEEEeecC
Q 001235 978 MMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAG 1057 (1117)
Q Consensus 978 ~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G 1057 (1117)
...+..+++.+.++.++..+ .+.+|+..|.|||.||+.||+||++++|.|.|++....+ .+.|+|+|||
T Consensus 217 ~~~~~~~~i~~~~~~~~~~~--~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------~~~i~v~D~G 285 (349)
T 3a0r_A 217 EEKIRKMNIDFCFETDNEDL--RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------KVRVSVWNSG 285 (349)
T ss_dssp HHHHTTTTCCCEEEESCSCC--EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT---------EEEEEEEEES
T ss_pred HHHHHHcCcEEEEecCCCCc--eEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEecCC---------EEEEEEEECC
Confidence 99999999999988876643 799999999999999999999999878999999888766 8999999999
Q ss_pred CCCChhhhhhccCCCCCCC--CccccHHHHHHHHH-HcCCEEEEEeeCCeEEEEEEEeccCC
Q 001235 1058 GGIPEPLLDQMFGSEGDTS--EEGISLLISRKLVK-LMNGDVQYLREAGKSTFIVSVELAAA 1116 (1117)
Q Consensus 1058 ~GI~~e~~~~iFe~f~~~~--GtGLGL~ivr~iVe-~~gG~I~v~s~~g~ttF~i~LPl~~a 1116 (1117)
+|||++.++++|+||++++ |+||||++||++++ .|||++++++.+++|+|+|+||+.++
T Consensus 286 ~Gi~~~~~~~if~~f~~~~~~g~GlGL~i~~~~v~~~~gg~i~~~~~~~Gt~f~i~lP~~~~ 347 (349)
T 3a0r_A 286 PPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPKTPE 347 (349)
T ss_dssp CCCCGGGGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEECSSEEEEEEEEESCTT
T ss_pred CCCChHHHhhcCCCCccCCCCCccchHHHHHHHHHHhCCCEEEEEeCCCcEEEEEEecCCCC
Confidence 9999999999999998665 89999999999999 89999999999888999999999865
No 8
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=100.00 E-value=4.2e-34 Score=294.50 Aligned_cols=152 Identities=20% Similarity=0.278 Sum_probs=140.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCe
Q 001235 208 ITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKV 287 (1117)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~ 287 (1117)
..+|++ ++|++++++++|++||+++|+||||||+|++||+|+|+||++.++++|++|.+||++|||.+++++|.++++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 467888 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEe
Q 001235 288 RMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVC 367 (1117)
Q Consensus 288 r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~ 367 (1117)
++|+|++.. +++|||.+||++|||+|+|++||+++ |+|||+|+|
T Consensus 81 ~~I~Dv~~~----------------------~~~~~~~~~l~~~~v~S~L~vPi~~~--------------~~l~GlL~~ 124 (171)
T 4glq_A 81 QATTDIFKA----------------------GLTECHLNQLRPLKVRANLVVPMVID--------------DQLFGLLIA 124 (171)
T ss_dssp EEESCGGGT----------------------TCCHHHHHHHGGGTEEEEEEEEEEET--------------TEEEEEEEE
T ss_pred EEEcCcCcC----------------------CCCHHHHHHHHhcCCcEEEEEEEEEC--------------CEEEEEEEE
Confidence 999999764 36899999999999999999999998 999999999
Q ss_pred ecc-CCCCCCchhHHHHHHHHHHHHHHHHHH
Q 001235 368 HNT-TPRFVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 368 hh~-~p~~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
||| +||.|+.++...++.++..+|+.|.+.
T Consensus 125 ~~~~~~r~w~~~ei~ll~~lA~ql~iAi~qa 155 (171)
T 4glq_A 125 HQASEPRQWQEIEIDQFSELASTGSLVLERL 155 (171)
T ss_dssp EEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998 699999999999999999999998654
No 9
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=2.3e-32 Score=301.23 Aligned_cols=233 Identities=17% Similarity=0.252 Sum_probs=197.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHh
Q 001235 869 QLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGT---ELGAEQKRLLHTSAQCQRQLHKILD 945 (1117)
Q Consensus 869 ~DITerk~~e~el~~~ae~~~~~k~~~la~isHEIrnPL~~I~~~~~LL~~~---~l~~~~~~~l~~i~~~~~~l~~ii~ 945 (1117)
.|+|++++.++ .++....+.+|++.++|||||||++|.++++++... ...++.+++++.+.....+|..+++
T Consensus 2 ~~it~~~~~~~-----l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 76 (258)
T 2c2a_A 2 ENVTESKELER-----LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76 (258)
T ss_dssp CCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-----HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57787776652 233344567899999999999999999999988643 2234567889999999999999999
Q ss_pred h-ccccccccCcccceeEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccC
Q 001235 946 D-SDLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVP 1024 (1117)
Q Consensus 946 d-Ld~skie~g~~~l~~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~ 1024 (1117)
+ +++++++.+...+...++++.++++.++..+...+..+++.+.++.+...+ ..+.+|+..|.|||.||+.||+||++
T Consensus 77 ~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~~l~~il~NLl~NAik~~~ 155 (258)
T 2c2a_A 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCP-VEAYIDPTRIRQVLLNLLNNGVKYSK 155 (258)
T ss_dssp HHHHHHHHHHTCCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSC-CEEEECHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCccCccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCC-ceEEeCHHHHHHHHHHHHHHHHhcCc
Confidence 9 699999999888899999999999999999999999999999887653332 36889999999999999999999997
Q ss_pred CC---CeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC--------CCccccHHHHHHHHHHcC
Q 001235 1025 NG---GQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT--------SEEGISLLISRKLVKLMN 1093 (1117)
Q Consensus 1025 ~~---g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~--------~GtGLGL~ivr~iVe~~g 1093 (1117)
.+ +.|.|.+....+ .+.|+|.|+|+|||++.++++|+||++. +|+||||+|||++++.||
T Consensus 156 ~~~~~~~i~i~~~~~~~---------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~g 226 (258)
T 2c2a_A 156 KDAPDKYVKVILDEKDG---------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHG 226 (258)
T ss_dssp TTCTTCEEEEEEEEETT---------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTT
T ss_pred CCCCceeEEEEEecCCC---------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcC
Confidence 53 568888777666 8999999999999999999999999743 389999999999999999
Q ss_pred CEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1094 GDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1094 G~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
|+|++.|.+|+ |+|+|+||...+
T Consensus 227 G~i~v~s~~~~Gt~f~i~lP~~~~ 250 (258)
T 2c2a_A 227 GRIWVESEVGKGSRFFVWIPKDRA 250 (258)
T ss_dssp CEEEEEEETTTEEEEEEEEECCC-
T ss_pred CEEEEEecCCCCcEEEEEeeCCCC
Confidence 99999999877 999999998653
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.1e-30 Score=286.11 Aligned_cols=226 Identities=13% Similarity=0.090 Sum_probs=163.0
Q ss_pred CCCEEEEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 001235 858 EGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQ 937 (1117)
Q Consensus 858 ~G~v~g~v~i~~DITerk~~e~el~~~ae~~~~~k~~~la~isHEIrnPL~~I~~~~~LL~~~~l~~~~~~~l~~i~~~~ 937 (1117)
.|....+...++|+|.++..+.+++...- ++ -+.+.|||||||||++|.+++++|++...++...++++.|.+..
T Consensus 17 ~g~~~~~~~~~~e~~~~~~~e~~~~~~~l-aa----llas~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~ 91 (247)
T 4fpp_A 17 RGSHNQMTETVTETTAPASPEADVQGPDF-AA----MLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSA 91 (247)
T ss_dssp --------------------------CHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHHH-HH----HHHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 45555667788999988877765543221 11 15678999999999999999999998887788888999999999
Q ss_pred HHHHHHHhhccccccccCcccceeEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHH
Q 001235 938 RQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLS 1017 (1117)
Q Consensus 938 ~~l~~ii~dLd~skie~g~~~l~~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~ 1017 (1117)
+++..+++.+.+.. +. .....++++.++.. .+......+++++..++++.. .+..+.|+|.||+.
T Consensus 92 ~~~~~ll~~~r~~~---~~-~~~~~~~~~~~l~~----~~~~~~~~~~i~l~~~~~~~~-------~~~~~~qvl~NLl~ 156 (247)
T 4fpp_A 92 RKLADLLQFTRVAF---GA-SASAENFDSRELEK----LAQGVFAHVRPTLDWQIEPQA-------MNKPSSRAVLNIAQ 156 (247)
T ss_dssp HHHHHHHHHHHHHT---TC-CSSCCCEEHHHHHH----HHHHHHTTSSSEEEECCCSCE-------ECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---cc-ccccccccHHHHHH----HHHHHHHhhhhhccccccchh-------hhHHHHHHHHHHHH
Confidence 99988887543322 11 22345677766543 344556678888888877652 24678899999999
Q ss_pred HHhhccCCCCeEEEEEEecccccccccceeEEEEEEeecCCC--CChhhhhhccCCCCCCC--CccccHHHHHHHHHHcC
Q 001235 1018 ISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGG--IPEPLLDQMFGSEGDTS--EEGISLLISRKLVKLMN 1093 (1117)
Q Consensus 1018 NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~G--I~~e~~~~iFe~f~~~~--GtGLGL~ivr~iVe~~g 1093 (1117)
||+||+|.+|.|+|++...++ .+.|+|.|+|+| ||++..+++|++|++++ |+||||+|||+||+.||
T Consensus 157 NA~~a~~~gg~I~v~~~~~~~---------~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~G~GLGLai~~~iv~~hG 227 (247)
T 4fpp_A 157 IAASALPAGGVATVKGVAADG---------RFSIIADAKGPRARLRPEVLAGLKGEPLAEGLGGPWVQAAYLNALVRAAG 227 (247)
T ss_dssp HHHTTCTTCCEEEEEEEEETT---------EEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCeEEEEEEEECC---------EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCCCccHHHHHHHHHHHHcC
Confidence 999999999999999988777 788888898877 78999999999997665 89999999999999999
Q ss_pred CEEEEEeeCCeEEEEEEEe
Q 001235 1094 GDVQYLREAGKSTFIVSVE 1112 (1117)
Q Consensus 1094 G~I~v~s~~g~ttF~i~LP 1112 (1117)
|+|+++|.+|+++|+|+||
T Consensus 228 G~i~v~s~~~G~~f~v~LP 246 (247)
T 4fpp_A 228 GQIAVEIGEDRASIAAWVP 246 (247)
T ss_dssp CEEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEcCCEEEEEEEec
Confidence 9999999999999999999
No 11
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.97 E-value=1.5e-29 Score=280.04 Aligned_cols=219 Identities=21% Similarity=0.362 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHhh-ccccccccCcccceeEEe
Q 001235 887 QTALKRLKALAYTKRQIRNPLSGIIFSRKMMEGT-ELGAEQKRLLHTSAQCQRQLHKILDD-SDLDSIIDGYLDLEMVEF 964 (1117)
Q Consensus 887 ~~~~~k~~~la~isHEIrnPL~~I~~~~~LL~~~-~l~~~~~~~l~~i~~~~~~l~~ii~d-Ld~skie~g~~~l~~~~~ 964 (1117)
+....+.++++.++|||||||++|.++++++... ..+++.+++++.+....+++..++++ ++++++..+...+...++
T Consensus 35 ~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 114 (268)
T 4ew8_A 35 EAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDI 114 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeec
Confidence 3344566789999999999999999999999864 46788899999999999999999999 599999988888999999
Q ss_pred eHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEeccccccccc
Q 001235 965 TLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSV 1044 (1117)
Q Consensus 965 ~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~ 1044 (1117)
++..++..++..+...+..+++.+.+++++..+ .+.+|+..|.+||.||+.||+||++.++.|.|++....+
T Consensus 115 ~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~--~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~------ 186 (268)
T 4ew8_A 115 RVSDLLLNAQERALKDAQLGGVTLAVECEEDVG--LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRALG------ 186 (268)
T ss_dssp EHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC--EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEECSS------
T ss_pred cHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc--eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEecCC------
Confidence 999999999999999999999999999988764 689999999999999999999999878999999988776
Q ss_pred ceeEEEEEEeecCCCCChhhhhhccCCCCCCC--CccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1045 HLAYLELRITHAGGGIPEPLLDQMFGSEGDTS--EEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1045 ~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~--GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
.+.|+|.|||+|||++..+++|+||++++ |+||||++||++++.|||+|++.+.+|+ |+|+|+||+..+
T Consensus 187 ---~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 187 ---EVRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp ---EEEEEEEESSCCCCHHHHTTTTSTTCCCSSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred ---EEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 89999999999999999999999997544 8999999999999999999999999887 999999998763
No 12
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.96 E-value=6.1e-30 Score=274.30 Aligned_cols=210 Identities=14% Similarity=0.196 Sum_probs=135.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHhh-ccccccccCcccceeEEeeHHHH
Q 001235 892 RLKALAYTKRQIRNPLSGIIFSRKMMEGTELG-AEQKRLLHTSAQCQRQLHKILDD-SDLDSIIDGYLDLEMVEFTLNEV 969 (1117)
Q Consensus 892 k~~~la~isHEIrnPL~~I~~~~~LL~~~~l~-~~~~~~l~~i~~~~~~l~~ii~d-Ld~skie~g~~~l~~~~~~L~~l 969 (1117)
+.+|++.++|||||||++|.++++++.....+ +...++++.+....+++..++++ +++++++.+........+++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45688999999999999999999998754433 34467777888888999999999 59999988888889999999999
Q ss_pred HHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeEE
Q 001235 970 LVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYL 1049 (1117)
Q Consensus 970 i~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l 1049 (1117)
+++++..+...+..+++.+.+++++... .+.+|+..|.|||.||+.||+||++.++.|.|.+. .. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~~---------~- 147 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI--KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--AD---------N- 147 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC--EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--SS---------E-
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce--EEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc--cC---------e-
Confidence 9999999999999999999999887743 68899999999999999999999987888887753 23 2
Q ss_pred EEEEeecCCCCChhhhhhccCCCCCCC-----CccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1050 ELRITHAGGGIPEPLLDQMFGSEGDTS-----EEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1050 ~i~V~D~G~GI~~e~~~~iFe~f~~~~-----GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
|.|.|||+|||++.++++|+||++++ |+||||++||++++.|||+|++.|.+|+ |+|+|++|..++
T Consensus 148 -i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~~ 219 (222)
T 3jz3_A 148 -FIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHHH 219 (222)
T ss_dssp -EEEECSCC--------------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC--
T ss_pred -EEEEECCCCCCHHHHHHHHhhhccCCCCCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCCC
Confidence 88999999999999999999997533 8999999999999999999999999988 999999998765
No 13
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.96 E-value=6.8e-28 Score=281.75 Aligned_cols=217 Identities=12% Similarity=0.119 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhh-ccccccccCcccceeEEee
Q 001235 888 TALKRLKALAYTKRQIRNPLSGII-FSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDD-SDLDSIIDGYLDLEMVEFT 965 (1117)
Q Consensus 888 ~~~~k~~~la~isHEIrnPL~~I~-~~~~LL~~~~l~~~~~~~l~~i~~~~~~l~~ii~d-Ld~skie~g~~~l~~~~~~ 965 (1117)
....+.++++.++||+||||+.|. ++.+++......++..++++.+..+..+|..++++ +++++++.+...+....++
T Consensus 117 ~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~ 196 (388)
T 1gkz_A 117 DEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLS 196 (388)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCC
Confidence 345667789999999999999999 77777766555778899999999999999999999 6999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccc---CcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCC--------eEEEEEE
Q 001235 966 LNEVLVASISQVMMKSNAK---GIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGG--------QLMVSSS 1034 (1117)
Q Consensus 966 L~~li~~v~~~~~~~~~~~---~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g--------~I~I~v~ 1034 (1117)
+.+++++++..+...+..+ .+.+.++..... .+.+|+..|.|||.|||.||+||++.++ .|.|.+.
T Consensus 197 l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~---~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 197 PKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA---RFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC---CEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCC---ceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 9999999999999988877 333444443332 5789999999999999999999997654 8999988
Q ss_pred ecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC----------------------------CCccccHHHHH
Q 001235 1035 LTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT----------------------------SEEGISLLISR 1086 (1117)
Q Consensus 1035 ~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~----------------------------~GtGLGL~ivr 1086 (1117)
..++ .+.|+|+|+|+|||++.+++||++|+++ .|+||||+|||
T Consensus 274 ~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r 344 (388)
T 1gkz_A 274 NNDV---------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSR 344 (388)
T ss_dssp ECSS---------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHH
T ss_pred eCCC---------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHH
Confidence 7766 8999999999999999999999999744 48999999999
Q ss_pred HHHHHcCCEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1087 KLVKLMNGDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1087 ~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
.+++.|||+|++.|.+|+ |+|+|+||....
T Consensus 345 ~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 345 AYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp HHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred HHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 999999999999999887 999999998764
No 14
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.96 E-value=8.7e-28 Score=261.45 Aligned_cols=209 Identities=19% Similarity=0.274 Sum_probs=184.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHhh-ccccccccCcccceeEEeeHHH
Q 001235 891 KRLKALAYTKRQIRNPLSGIIFSRKMMEGTEL-GAEQKRLLHTSAQCQRQLHKILDD-SDLDSIIDGYLDLEMVEFTLNE 968 (1117)
Q Consensus 891 ~k~~~la~isHEIrnPL~~I~~~~~LL~~~~l-~~~~~~~l~~i~~~~~~l~~ii~d-Ld~skie~g~~~l~~~~~~L~~ 968 (1117)
.+.++++.++|||||||++|.++++++..... .++..++++.+....+++..++++ +++.+...+ ....+++..
T Consensus 13 ~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~~ 88 (244)
T 3d36_A 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKL 88 (244)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHHH
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHHH
Confidence 34567889999999999999999999987654 456688999999999999999999 588886544 578999999
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeE
Q 001235 969 VLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAY 1048 (1117)
Q Consensus 969 li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~ 1048 (1117)
+++.++..+...+..+++.+.++.++ ..+.+|+..|.+||.||+.||++|++.++.|.|.+...++ .
T Consensus 89 ~l~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~---------~ 155 (244)
T 3d36_A 89 EIERVIDILRPLANMSCVDIQATLAP----FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG---------R 155 (244)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEECCC----CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------E
T ss_pred HHHHHHHHHHHHHHhcCeEEeccCCC----ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCC---------E
Confidence 99999999999999999999888765 2689999999999999999999999878999999888776 8
Q ss_pred EEEEEeecCCCCChhhhhhccCCCCCCC---CccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1049 LELRITHAGGGIPEPLLDQMFGSEGDTS---EEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1049 l~i~V~D~G~GI~~e~~~~iFe~f~~~~---GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
+.|.|.|+|+|||++..+++|+||++++ |.|+||++||++++.|||+|++.+.+++ |+|+|+||+..+
T Consensus 156 ~~i~i~D~G~gi~~~~~~~if~~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 156 VLIRIADTGVGMTKEQLERLGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp EEEEEEECSSCCCHHHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred EEEEEEecCCCCCHHHHHHHhcccccCCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 9999999999999999999999998655 8999999999999999999999999776 999999999753
No 15
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.95 E-value=6.9e-28 Score=248.42 Aligned_cols=164 Identities=33% Similarity=0.566 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccC-CCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCcc
Q 001235 219 MERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS-GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARH 297 (1117)
Q Consensus 219 ~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~-~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~ 297 (1117)
++++++++++++++++|+|||+||+|++|++|++++|+..+ +++|++|.+||.+|+|.+++.+|.++++|+|.|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 47899999999999999999999999999999999999987 47899999999999999999999999999999999998
Q ss_pred ccccc--CCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCC
Q 001235 298 VKVLQ--DEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFV 375 (1117)
Q Consensus 298 v~~~~--~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~ 375 (1117)
+.++| ...+++|+.++++..++.+|||.+|++++|++|.|++||+.+ |++||+|.|||+.||.|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~--------------~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH--------------QELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCS--------------SCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEEC--------------CEEEEEEEEEeCCCCCC
Confidence 88875 467899999999999999999999999999999999999977 99999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 001235 376 PFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 376 ~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
+.++...++.++.++|+.|.+
T Consensus 147 ~~~e~~~l~~la~~~a~ai~~ 167 (172)
T 2k2n_A 147 SQEELQVVQLLADQVSIAIAQ 167 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988864
No 16
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.95 E-value=5e-27 Score=274.89 Aligned_cols=209 Identities=14% Similarity=0.165 Sum_probs=171.3
Q ss_pred HHHHHHHhhhhh-----hHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHhh-cccccccc-Ccccce
Q 001235 894 KALAYTKRQIRN-----PLSGIIFSRKMMEGTELGAE----QKRLLH--TSAQCQRQLHKILDD-SDLDSIID-GYLDLE 960 (1117)
Q Consensus 894 ~~la~isHEIrn-----PL~~I~~~~~LL~~~~l~~~----~~~~l~--~i~~~~~~l~~ii~d-Ld~skie~-g~~~l~ 960 (1117)
.+++.++||||| ||+.|.++++++.....++. ..++++ .+.+...+| ++++ |++++.+. +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 468889999999 89999999999886544433 344777 377777888 8888 69999877 566677
Q ss_pred e----EEeeHHHHHHHHHHHHHhhhcc-----cCcEEEEee---cCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCC-
Q 001235 961 M----VEFTLNEVLVASISQVMMKSNA-----KGIRIVNET---AEQIMSETLYGDSIRLQQVLADFLSISINFVPNGG- 1027 (1117)
Q Consensus 961 ~----~~~~L~~li~~v~~~~~~~~~~-----~~i~i~~~~---~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g- 1027 (1117)
. .++++.+++++++..+...+.. +++.+.++. +.. ...+.+|+..|.|||.|||.||+||++.++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~~~~ 252 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ--PIHMVYVPSHLYHMLFELFKNAMRATVESHE 252 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCC--CeEEEecHHHHHHHHHHHHHHHHHHhhhccc
Confidence 7 8999999999999999998876 888888743 232 237999999999999999999999998655
Q ss_pred ------eEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC-------------CCccccHHHHHHH
Q 001235 1028 ------QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT-------------SEEGISLLISRKL 1088 (1117)
Q Consensus 1028 ------~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~-------------~GtGLGL~ivr~i 1088 (1117)
.|.|++....+ .+.|+|+|+|+|||++.+++||++|+++ +|+||||+|||.+
T Consensus 253 ~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i 323 (394)
T 2btz_A 253 SSLILPPIKVMVALGEE---------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLY 323 (394)
T ss_dssp TCSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCC---------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHH
Confidence 69999887766 8999999999999999999999999753 3899999999999
Q ss_pred HHHcCCEEEEEeeCCe-EEEEEEEeccC
Q 001235 1089 VKLMNGDVQYLREAGK-STFIVSVELAA 1115 (1117)
Q Consensus 1089 Ve~~gG~I~v~s~~g~-ttF~i~LPl~~ 1115 (1117)
++.|||+|++.|.+|+ |+|+|+||+..
T Consensus 324 ~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 324 AKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred HHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999887 99999999875
No 17
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.95 E-value=1.1e-26 Score=272.04 Aligned_cols=210 Identities=15% Similarity=0.200 Sum_probs=179.3
Q ss_pred HHHHHHHHHhhhhh-----hHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHhh-cc-ccccccCccc
Q 001235 892 RLKALAYTKRQIRN-----PLSGIIFSRKMMEGTE----LGAEQKRLLH--TSAQCQRQLHKILDD-SD-LDSIIDGYLD 958 (1117)
Q Consensus 892 k~~~la~isHEIrn-----PL~~I~~~~~LL~~~~----l~~~~~~~l~--~i~~~~~~l~~ii~d-Ld-~skie~g~~~ 958 (1117)
+..+++.++||||| ||+.|.+++++++... ..++..++++ .+.+...+| ++++ |+ +++. .+...
T Consensus 95 ~~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~ 171 (394)
T 2e0a_A 95 ALSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNP 171 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCT
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCC
Confidence 33467888899999 8888899999887542 3466688888 588888888 8888 66 6766 66677
Q ss_pred cee----EEeeHHHHHHHHHHHHHhhhccc-----CcEEEEee---cCCCcceeEEecHHHHHHHHHHHHHHHhhccCCC
Q 001235 959 LEM----VEFTLNEVLVASISQVMMKSNAK-----GIRIVNET---AEQIMSETLYGDSIRLQQVLADFLSISINFVPNG 1026 (1117)
Q Consensus 959 l~~----~~~~L~~li~~v~~~~~~~~~~~-----~i~i~~~~---~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~ 1026 (1117)
+.. .++++.+++++++..+...+..+ ++++.++. +.. ...+.+|+..|.|||.|||.||+||++++
T Consensus 172 ~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~~ 249 (394)
T 2e0a_A 172 SHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQ--PIHIVYVPSHLHHMLFELFKNAMRATVEH 249 (394)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHhc
Confidence 777 89999999999999999998888 88888853 222 23799999999999999999999999765
Q ss_pred C-------eEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC--------------CCccccHHHH
Q 001235 1027 G-------QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT--------------SEEGISLLIS 1085 (1117)
Q Consensus 1027 g-------~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~--------------~GtGLGL~iv 1085 (1117)
+ .|.|.+....+ .+.|+|+|+|+|||++.+++||++|+++ +|+||||+||
T Consensus 250 ~~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~ 320 (394)
T 2e0a_A 250 QENQPSLTPIEVIVVLGKE---------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPIS 320 (394)
T ss_dssp TTTSSSCCCEEEEEEECSS---------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHH
T ss_pred ccccCCCCCEEEEEEeCCC---------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHH
Confidence 4 69999887766 8999999999999999999999999754 3899999999
Q ss_pred HHHHHHcCCEEEEEeeCCe-EEEEEEEeccC
Q 001235 1086 RKLVKLMNGDVQYLREAGK-STFIVSVELAA 1115 (1117)
Q Consensus 1086 r~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~ 1115 (1117)
|.+++.|||+|++.|.+|+ |+|+|+||+..
T Consensus 321 ~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 321 RLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp HHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred HHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 9999999999999999886 99999999865
No 18
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.95 E-value=2.2e-26 Score=270.61 Aligned_cols=209 Identities=15% Similarity=0.157 Sum_probs=174.3
Q ss_pred HHHHHHHhhhhh-----hHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHhh-cccccccc----C--
Q 001235 894 KALAYTKRQIRN-----PLSGIIFSRKMMEGTELG----AEQKRLLHT--SAQCQRQLHKILDD-SDLDSIID----G-- 955 (1117)
Q Consensus 894 ~~la~isHEIrn-----PL~~I~~~~~LL~~~~l~----~~~~~~l~~--i~~~~~~l~~ii~d-Ld~skie~----g-- 955 (1117)
.++..++||||| ||+.|.+++++++....+ ++..++++. +.+...+| ++++ |++++.+. +
T Consensus 107 ~~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~ 184 (407)
T 2q8g_A 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHR 184 (407)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCc
Confidence 344555599999 999999999988765433 344677776 66667788 8888 69888865 3
Q ss_pred -cccceeEEeeHHHHHHHHHHHHHhhhccc-----CcEEEEee---cCCCcceeEEecHHHHHHHHHHHHHHHhhccCCC
Q 001235 956 -YLDLEMVEFTLNEVLVASISQVMMKSNAK-----GIRIVNET---AEQIMSETLYGDSIRLQQVLADFLSISINFVPNG 1026 (1117)
Q Consensus 956 -~~~l~~~~~~L~~li~~v~~~~~~~~~~~-----~i~i~~~~---~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~ 1026 (1117)
...+...++++.+++++++..+...+..+ ++.+.++. +.. ...+.+|+..|.|||.|||.||+||++.+
T Consensus 185 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 185 KHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ--PIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHhhc
Confidence 56778899999999999999999998877 88888876 222 23799999999999999999999999765
Q ss_pred C-------eEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC--------------CCccccHHHH
Q 001235 1027 G-------QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT--------------SEEGISLLIS 1085 (1117)
Q Consensus 1027 g-------~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~--------------~GtGLGL~iv 1085 (1117)
+ .|.|.+....+ .+.|+|+|+|+|||++.+++||++|+++ +|+||||+||
T Consensus 263 ~~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Iv 333 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE---------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPIS 333 (407)
T ss_dssp STTTCCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHH
T ss_pred cccCCCCCCEEEEEEeCCC---------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHH
Confidence 5 79999887766 8999999999999999999999999643 4899999999
Q ss_pred HHHHHHcCCEEEEEeeCCe-EEEEEEEeccC
Q 001235 1086 RKLVKLMNGDVQYLREAGK-STFIVSVELAA 1115 (1117)
Q Consensus 1086 r~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~ 1115 (1117)
|.+++.|||+|++.|.+|+ |+|+|+||+..
T Consensus 334 r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 334 RLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp HHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred HHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 9999999999999999887 99999999864
No 19
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.94 E-value=6.2e-26 Score=244.57 Aligned_cols=221 Identities=13% Similarity=0.079 Sum_probs=186.9
Q ss_pred cEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCCceEEE
Q 001235 628 PILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPITL 707 (1117)
Q Consensus 628 gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG~~~~v 707 (1117)
.|+++|.+|+|++||+++++++||+.+|++|+++..+.++.........+...+..+.....++.. +++||..+|+
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~dG~~~~~ 76 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCN----RRKDGTRYWV 76 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEE----ECSSSCEEEE
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEE----EcCCCCEEee
Confidence 478899999999999999999999999999999988877665555555555566555544444443 4889999999
Q ss_pred EEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChh
Q 001235 708 IVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKRE 787 (1117)
Q Consensus 708 ~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~e 787 (1117)
.++..|++|.+|++.+++++.+|||++|++|++|++ ++.+++++++ +|++.|.+|+|+++|+++++++||+++
T Consensus 77 ~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~----~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~ 149 (227)
T 3ewk_A 77 DSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR----LKQAMDANSE---MILLTDRAGRIIYANPALCRFSGMAEG 149 (227)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH----HHHHHHTCCS---EEEEECTTSCEEEECHHHHHHHTCCTH
T ss_pred eeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH----HHHHHhcCcC---eEEEEcCCCcEEEEchHHHHHhCCCHH
Confidence 999999999999999999999999999999999864 5567888888 899999999999999999999999999
Q ss_pred hHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCCceEeEEEEecCCc------EEEEEEEEeeeeCCCCCE
Q 001235 788 EVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGK------YAECLLCVNKKLDREGAV 861 (1117)
Q Consensus 788 EliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~------~~~v~~~~~pi~d~~G~v 861 (1117)
|++|++.. .+.+++....+...+.+.+..+.++..++..++++|. .+|+.+++.|++|.+|.+
T Consensus 150 e~~g~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~ 218 (227)
T 3ewk_A 150 ELLGQSPS-----------ILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGL 218 (227)
T ss_dssp HHHSSCGG-----------GGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCE
T ss_pred HHcCCChh-----------hccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCE
Confidence 99999843 2223334444556677777778889999999999997 899999999999999999
Q ss_pred EEEEeehhH
Q 001235 862 TGVFCFLQL 870 (1117)
Q Consensus 862 ~g~v~i~~D 870 (1117)
++++++.+|
T Consensus 219 ~~~v~i~~D 227 (227)
T 3ewk_A 219 VGYVQIQHD 227 (227)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999999876
No 20
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.94 E-value=1.7e-26 Score=245.50 Aligned_cols=183 Identities=31% Similarity=0.516 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccC-CCCCccCCcCCCCCchHH
Q 001235 199 QSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKS-GLEPYLGLHYPATDIPQA 277 (1117)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~-~~~~~lg~~~p~~dip~~ 277 (1117)
+..+++.++..+|.+ +.|++++++++++++++++|+|||+||.|++|++|++++|+..+ ++++++|.+||.+|||.+
T Consensus 13 ~~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 90 (208)
T 2lb5_A 13 SRDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEE 90 (208)
T ss_dssp --------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSH
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHH
Confidence 345566777788888 77999999999999999999999999999999999999999987 579999999999999999
Q ss_pred HHHHHHhCCeEEEeccCCccccccc--CCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcc
Q 001235 278 ARFLFMKNKVRMIVDCRARHVKVLQ--DEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLP 355 (1117)
Q Consensus 278 ~r~l~~~~~~r~i~d~~~~~v~~~~--~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~ 355 (1117)
++.+|.++++|+|.|+...++.++| ...+++|++++++..++.+|||.+||+++|++|.|+|||+.+
T Consensus 91 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~----------- 159 (208)
T 2lb5_A 91 ARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH----------- 159 (208)
T ss_dssp HHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEET-----------
T ss_pred HHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEEC-----------
Confidence 9999999999999999999888765 356789999999999999999999999999999999999988
Q ss_pred cccccceeeEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 001235 356 QKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 356 ~~~~~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
|++||+|.|||++||.|+.+....++.++..+|+.|...
T Consensus 160 ---~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~a 198 (208)
T 2lb5_A 160 ---QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQA 198 (208)
T ss_dssp ---TEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988643
No 21
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.94 E-value=7e-26 Score=267.06 Aligned_cols=207 Identities=14% Similarity=0.145 Sum_probs=164.3
Q ss_pred HHHHHhhhhhhHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHhh-cccc-ccccCcccc---
Q 001235 896 LAYTKRQIRNPLS-----GIIFSRKMMEGTEL----GAEQKRLLHTSAQC--QRQLHKILDD-SDLD-SIIDGYLDL--- 959 (1117)
Q Consensus 896 la~isHEIrnPL~-----~I~~~~~LL~~~~l----~~~~~~~l~~i~~~--~~~l~~ii~d-Ld~s-kie~g~~~l--- 959 (1117)
+..++|||||||+ .|.+++++++.... .++..++++.+... ..+| ++++ |.+. +...+....
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~~~ 198 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKHIG 198 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTSBT
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCCccc
Confidence 4566799999999 77899998875322 34456677775444 5666 7887 4444 333333332
Q ss_pred -eeEEeeHHHHHHHHHHHHHhhhcc-----cCcEEEEee---cCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCC---
Q 001235 960 -EMVEFTLNEVLVASISQVMMKSNA-----KGIRIVNET---AEQIMSETLYGDSIRLQQVLADFLSISINFVPNGG--- 1027 (1117)
Q Consensus 960 -~~~~~~L~~li~~v~~~~~~~~~~-----~~i~i~~~~---~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g--- 1027 (1117)
...++++.+++++++..+...+.. +++.+.++. ++. ...+.+|+..|.|||.|||.||+||+++++
T Consensus 199 ~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~ 276 (419)
T 1y8o_A 199 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK--PIQVVYVPSHLFHMLFELFKNSMRATVELYEDR 276 (419)
T ss_dssp TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 348999999999999999888766 777777643 222 237999999999999999999999997543
Q ss_pred -----eEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC--------------CCccccHHHHHHH
Q 001235 1028 -----QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT--------------SEEGISLLISRKL 1088 (1117)
Q Consensus 1028 -----~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~--------------~GtGLGL~ivr~i 1088 (1117)
.|.|.+....+ .+.|+|+|+|+|||++.+++||+||+++ +|+||||+|||++
T Consensus 277 ~~~~~~I~I~~~~~~~---------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~i 347 (419)
T 1y8o_A 277 KEGYPAVKTLVTLGKE---------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLY 347 (419)
T ss_dssp SSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHH
T ss_pred CCCCCCEEEEEEeCCC---------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHH
Confidence 79999877666 8999999999999999999999999743 3899999999999
Q ss_pred HHHcCCEEEEEeeCCe-EEEEEEEeccC
Q 001235 1089 VKLMNGDVQYLREAGK-STFIVSVELAA 1115 (1117)
Q Consensus 1089 Ve~~gG~I~v~s~~g~-ttF~i~LPl~~ 1115 (1117)
++.|||+|++.|.+|+ |+|+|+||...
T Consensus 348 v~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 348 ARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred HHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 9999999999999887 99999999865
No 22
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.89 E-value=5.1e-23 Score=239.05 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCcccceeEEeeHHH
Q 001235 890 LKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDS-DLDSIIDGYLDLEMVEFTLNE 968 (1117)
Q Consensus 890 ~~k~~~la~isHEIrnPL~~I~~~~~LL~~~~l~~~~~~~l~~i~~~~~~l~~ii~dL-d~skie~g~~~l~~~~~~L~~ 968 (1117)
..|..++..++||+++|++.|.++.+.+.. +.+.+..+++.++++++ ++.. ....+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHH
Confidence 457788999999999999999887665543 44666677888888884 5542 244677889
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHH---HHHHHHHHHHHHHhhcc------------CCCCeEEEEE
Q 001235 969 VLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSI---RLQQVLADFLSISINFV------------PNGGQLMVSS 1033 (1117)
Q Consensus 969 li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~---~L~qVL~nLl~NAik~~------------~~~g~I~I~v 1033 (1117)
+++.+...++..+...+.++.+++.... +..|+. ++.++|.||+.||+||+ ++.|.|+|++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~----~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~ 144 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED----TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSA 144 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT----CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC----eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEE
Confidence 9999999999988887777777776542 456775 55566999999999997 5688999999
Q ss_pred EecccccccccceeEEEEEEeecCCCCChhhh------------------------hhccCCCCCCC-------CccccH
Q 001235 1034 SLTKDQLGQSVHLAYLELRITHAGGGIPEPLL------------------------DQMFGSEGDTS-------EEGISL 1082 (1117)
Q Consensus 1034 ~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~------------------------~~iFe~f~~~~-------GtGLGL 1082 (1117)
...++ ++.|+|+|||+|||++.+ ++||+|||+++ |+|+||
T Consensus 145 ~~~~~---------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~~~~G~GlGL 215 (379)
T 1b3q_A 145 RHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGM 215 (379)
T ss_dssp EEETT---------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------CCCS
T ss_pred EEeCC---------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccCCCCCccccH
Confidence 88776 899999999999999987 89999987553 889999
Q ss_pred HHHHHHHHHcCCEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1083 LISRKLVKLMNGDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1083 ~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
++||++++.|||+|+++|.+|+ |+|+|+||+..+
T Consensus 216 ~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~~ 250 (379)
T 1b3q_A 216 DVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLA 250 (379)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCE
T ss_pred HHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCccc
Confidence 9999999999999999999988 999999998753
No 23
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=6.3e-22 Score=198.72 Aligned_cols=146 Identities=23% Similarity=0.313 Sum_probs=133.3
Q ss_pred eeEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccc
Q 001235 960 EMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQ 1039 (1117)
Q Consensus 960 ~~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~ 1039 (1117)
+..++++.+++++++..+...+..+++++.+++++.. ..+.+|+..|.++|.||+.||+||+++++.|.|++....+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~- 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED--LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT- 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS--CEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSS-
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC--cEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCC-
Confidence 4679999999999999999999999999999987653 3699999999999999999999999878999999887766
Q ss_pred cccccceeEEEEEEeecCCCCChhhhhhccCCCCCCC--CccccHHHHHHHHH-HcCCEEEEEeeCCeEEEEEEEeccCC
Q 001235 1040 LGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTS--EEGISLLISRKLVK-LMNGDVQYLREAGKSTFIVSVELAAA 1116 (1117)
Q Consensus 1040 ~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~--GtGLGL~ivr~iVe-~~gG~I~v~s~~g~ttF~i~LPl~~a 1116 (1117)
.+.|+|.|+|+|||++..+++|+||++++ |+|+||++||++++ .|||++.+.+.+++++|+|+||+.+.
T Consensus 79 --------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~g~~~~i~lP~~~~ 150 (152)
T 3a0y_A 79 --------KVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPKTPE 150 (152)
T ss_dssp --------EEEEEEEEESCCCCGGGTTGGGSTTCCCC--CCCCSHHHHHHHHHTTTSCEEEEEEETTEEEEEEEEESCC-
T ss_pred --------EEEEEEEeCCCCcCHHHHHhHhhhhccCCCCCCCcCHHHHHHHHHHhCCcEEEEecCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999997554 89999999999999 99999999999888999999998764
No 24
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.88 E-value=6.2e-22 Score=211.68 Aligned_cols=189 Identities=13% Similarity=0.064 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCcccceeEEeeH
Q 001235 890 LKRLKALAYTKRQIRNPLSGIIFSRKMMEGT--ELGAEQKRLLHTSAQCQRQLHKILDDS-DLDSIIDGYLDLEMVEFTL 966 (1117)
Q Consensus 890 ~~k~~~la~isHEIrnPL~~I~~~~~LL~~~--~l~~~~~~~l~~i~~~~~~l~~ii~dL-d~skie~g~~~l~~~~~~L 966 (1117)
..+.++...++|++++||++|.+.++++... ...+...+.++.+....+++...+..+ ... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 3456678899999999999999998887652 334445667777766666666666652 222 23567
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccce
Q 001235 967 NEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHL 1046 (1117)
Q Consensus 967 ~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~ 1046 (1117)
.+.+..+...+ ...++.+.++.+...+ .....+...|.+|+.||+.||+||++ ++.|.|++...++
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~l~~il~nll~Na~k~~~-~~~i~i~~~~~~~-------- 160 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPE-NISLLNENILSMCLKEAVTNVVKHSQ-AKTCRVDIQQLWK-------- 160 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCS-CCCHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEEEEEETT--------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEEeCC--------
Confidence 77777665554 4577888888776542 24457888899999999999999997 5799999888776
Q ss_pred eEEEEEEeecCCCCChhhhhhccCCCCCCCCccccHHHHHHHHHHcCCEEEEEeeCCeEEEEEEEeccC
Q 001235 1047 AYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAA 1115 (1117)
Q Consensus 1047 ~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~GtGLGL~ivr~iVe~~gG~I~v~s~~g~ttF~i~LPl~~ 1115 (1117)
.+.|+|+|||+|||++.. +|+|+||++||++++.|||+|++.|.+ +|+|+|+||+..
T Consensus 161 -~~~i~V~D~G~Gi~~~~~----------~g~GlGL~~~~~~v~~~gG~i~~~s~~-Gt~~~i~lP~~~ 217 (218)
T 3ehh_A 161 -EVVITVSDDGTFKGEENS----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPNNS 217 (218)
T ss_dssp -EEEEEEEESSCCCC------------------CHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC--
T ss_pred -EEEEEEEECCcCCCCCCC----------CCCCCCHHHHHHHHHHcCCEEEEeCCC-CeEEEEEEecCC
Confidence 899999999999999864 789999999999999999999999999 999999999863
No 25
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.87 E-value=2.4e-21 Score=194.77 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=127.9
Q ss_pred EEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccccc
Q 001235 962 VEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLG 1041 (1117)
Q Consensus 962 ~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~ 1041 (1117)
+++++.+++++++..+...+..+++++.+++++.. .+.+|+..|.|+|.||+.||+||++. .|.|++...++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~d~~~l~~il~nLl~NAi~~~~~--~i~i~~~~~~~--- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI---SFVGEQNDFVEVMGNVLDNACKYCLE--FVEISARQTDE--- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC---EEESCHHHHHHHHHHHHHHHHHHCSS--EEEEEEEECSS---
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc---eEeeCHHHHHHHHHHHHHHHHHhCcC--eEEEEEEecCC---
Confidence 47999999999999999999999999999988764 48899999999999999999999974 88888877666
Q ss_pred cccceeEEEEEEeecCCCCChhhhhhccCCCCCC----CCccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1042 QSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT----SEEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1042 ~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~----~GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
.+.|.|.|+|+|||++..+++|+||+++ +|.||||++||++++.|||+|++.+.+++ |+|+|+||+..+
T Consensus 74 ------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 147 (152)
T 1id0_A 74 ------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHS 147 (152)
T ss_dssp ------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCCTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC-
T ss_pred ------EEEEEEEeCCCCcCHHHHHHHhccceeccCCCCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEecccc
Confidence 7999999999999999999999999644 48999999999999999999999998866 999999999764
No 26
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.87 E-value=1.6e-21 Score=197.47 Aligned_cols=155 Identities=18% Similarity=0.290 Sum_probs=115.3
Q ss_pred cceeEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCC-CCeEEEEEEec
Q 001235 958 DLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPN-GGQLMVSSSLT 1036 (1117)
Q Consensus 958 ~l~~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~-~g~I~I~v~~~ 1036 (1117)
.++..++++.+++++++..+... ..+++++.+++++..+ .+.+|+..|.++|.||+.||+||++. ++.|.|++...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~ 78 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP--ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTA 78 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC--CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC--eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecc
Confidence 45678999999999999999987 7788999999887764 58999999999999999999999987 78999888765
Q ss_pred ccccc-cccceeEEEEEEeecCCCCChhhhhhccCCCCCCC--CccccHHHHHHHHHHcCCEEEEEeeCCeEEEEEEEec
Q 001235 1037 KDQLG-QSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTS--EEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVEL 1113 (1117)
Q Consensus 1037 ~~~~~-~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~--GtGLGL~ivr~iVe~~gG~I~v~s~~g~ttF~i~LPl 1113 (1117)
.+... .......+.|.|.|+|+||+++.++++|+||++++ |+||||++|+++++.|||+|++.+.+++|+|+|+||+
T Consensus 79 ~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~~~~~i~lP~ 158 (160)
T 1r62_A 79 FQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPI 158 (160)
T ss_dssp EEEEETTEEEEEEEEEEEEEECTTC--------------------CHHHHHHHHHHHHTTCEEEEEEETTEEEEEEEEEE
T ss_pred ccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCEEEEEEEec
Confidence 43100 01112378999999999999999999999997554 8999999999999999999999999988999999998
Q ss_pred cC
Q 001235 1114 AA 1115 (1117)
Q Consensus 1114 ~~ 1115 (1117)
.+
T Consensus 159 ~~ 160 (160)
T 1r62_A 159 RK 160 (160)
T ss_dssp EC
T ss_pred cC
Confidence 63
No 27
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.86 E-value=4.9e-21 Score=192.18 Aligned_cols=140 Identities=12% Similarity=0.175 Sum_probs=119.2
Q ss_pred eeEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccc
Q 001235 960 EMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQ 1039 (1117)
Q Consensus 960 ~~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~ 1039 (1117)
+..++++.+++++++..+..... ++.+.++.+.. ..+.+|+..|.|+|.||+.||+||++. +.|.|++...++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~-~~I~i~~~~~~~- 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPSPT---CIIVGLPAGLRLAVDNAIANAVKHGGA-TLVQLSAVSSRA- 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSCCC---CEEEECHHHHHHHHHHHHHHHHHTTCC-SEEEEEEEEETT-
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccCCC---ceEecCHHHHHHHHHHHHHHHHhcCCC-cEEEEEEEecCC-
Confidence 56799999999999999887664 45666665543 368999999999999999999999974 589998887776
Q ss_pred cccccceeEEEEEEeecCCCCChhhhhhccCCCCC-----CCCccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEec
Q 001235 1040 LGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGD-----TSEEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVEL 1113 (1117)
Q Consensus 1040 ~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~-----~~GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl 1113 (1117)
.+.|+|.|+|+||+++..+++|+||+. .+|.||||++||++++.|||+|++.+.+++ ++|+|+||+
T Consensus 77 --------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 148 (150)
T 1ysr_A 77 --------GVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPG 148 (150)
T ss_dssp --------EEEEEEEESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEEC
T ss_pred --------EEEEEEEECCCCCCHHHHHHHhcccccCCCCCCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeC
Confidence 799999999999999999999999973 238899999999999999999999998876 999999998
Q ss_pred c
Q 001235 1114 A 1114 (1117)
Q Consensus 1114 ~ 1114 (1117)
+
T Consensus 149 ~ 149 (150)
T 1ysr_A 149 P 149 (150)
T ss_dssp C
T ss_pred C
Confidence 6
No 28
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.84 E-value=1.6e-20 Score=190.98 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=122.5
Q ss_pred cceeEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecc
Q 001235 958 DLEMVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTK 1037 (1117)
Q Consensus 958 ~l~~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~ 1037 (1117)
++...++++.+++++++..+.. .+..+.++++... ..+.+|+..|.|+|.||+.||+||+ ++.|.|++...+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~--~~v~~d~~~l~~il~nll~NAik~~--~~~I~i~~~~~~ 75 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGS--IEVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSGTEP 75 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSC--CCEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEEET
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCC--ceEEECHHHHHHHHHHHHHHHHhhc--CCeEEEEEEEcC
Confidence 4567899999999999988543 4455666654443 3689999999999999999999999 789999988776
Q ss_pred cccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC------CCccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEE
Q 001235 1038 DQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT------SEEGISLLISRKLVKLMNGDVQYLREAGK-STFIVS 1110 (1117)
Q Consensus 1038 ~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~------~GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~ 1110 (1117)
+ .+.|.|.|+|.||+++.++++|+||++. .|+||||++||++++.|||+|++.+.+++ ++|+|+
T Consensus 76 ~---------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~ 146 (161)
T 1bxd_A 76 N---------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAW 146 (161)
T ss_dssp T---------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEE
T ss_pred C---------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEE
Confidence 6 8999999999999999999999999653 48899999999999999999999998766 999999
Q ss_pred EeccCC
Q 001235 1111 VELAAA 1116 (1117)
Q Consensus 1111 LPl~~a 1116 (1117)
||+..+
T Consensus 147 lP~~~~ 152 (161)
T 1bxd_A 147 LPVPVT 152 (161)
T ss_dssp ECCCSC
T ss_pred EeCCcc
Confidence 999764
No 29
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.84 E-value=2.4e-20 Score=192.85 Aligned_cols=144 Identities=18% Similarity=0.330 Sum_probs=124.3
Q ss_pred EeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEeccccccc
Q 001235 963 EFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQ 1042 (1117)
Q Consensus 963 ~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~ 1042 (1117)
+++|.++++.++..+... ..+++++.+++++.. ..+.+|+..|.+||.||+.||++|++.++.|.|.+..... +
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~--~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~--~- 75 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD--LYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEE--E- 75 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC--CEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETT--T-
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC--cEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccC--C-
Confidence 689999999999999988 888999999988754 3789999999999999999999999878888887754322 1
Q ss_pred ccceeEEEEEEeecCCCCChhhhhhccCCCCCC--------CCccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEec
Q 001235 1043 SVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT--------SEEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVEL 1113 (1117)
Q Consensus 1043 ~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~--------~GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl 1113 (1117)
..+.|+|.|+|+||+++.++++|++|+.. +|.||||++|+++++.|||+|.+.+.+++ |+|+|+||+
T Consensus 76 ----~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~ 151 (177)
T 3sl2_A 76 ----ELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPY 151 (177)
T ss_dssp ----TEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEE
T ss_pred ----CEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeC
Confidence 17999999999999999999999999632 28999999999999999999999999886 999999999
Q ss_pred cCC
Q 001235 1114 AAA 1116 (1117)
Q Consensus 1114 ~~a 1116 (1117)
...
T Consensus 152 ~~~ 154 (177)
T 3sl2_A 152 KEE 154 (177)
T ss_dssp EC-
T ss_pred CCC
Confidence 753
No 30
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.82 E-value=4.7e-20 Score=192.76 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=123.1
Q ss_pred eEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhcc------------CCCCe
Q 001235 961 MVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFV------------PNGGQ 1028 (1117)
Q Consensus 961 ~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~------------~~~g~ 1028 (1117)
..++++.++++.+...+...+..+++.+.++++.... .....+..++.|+|.||+.||+||+ +.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~ 80 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDT-ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGT 80 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTC-EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcc-cccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCe
Confidence 4589999999999999999999888888888765531 1223344566777999999999997 55789
Q ss_pred EEEEEEecccccccccceeEEEEEEeecCCCCChhhh------------------------hhccCCCCCC-------CC
Q 001235 1029 LMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLL------------------------DQMFGSEGDT-------SE 1077 (1117)
Q Consensus 1029 I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~------------------------~~iFe~f~~~-------~G 1077 (1117)
|.|++...++ .+.|+|+|+|+|||++.+ +++|+||+++ +|
T Consensus 81 I~I~~~~~~~---------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~~~g 151 (189)
T 1i58_A 81 LILSARHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSG 151 (189)
T ss_dssp EEEEEEEETT---------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHGGGT
T ss_pred EEEEEEecCC---------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccccCCCCCC
Confidence 9999988776 899999999999999976 9999998754 48
Q ss_pred ccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEecc
Q 001235 1078 EGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVELA 1114 (1117)
Q Consensus 1078 tGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~ 1114 (1117)
+||||++|+++++.|||+|++.+.+++ |+|+|+||+.
T Consensus 152 ~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl~ 189 (189)
T 1i58_A 152 RGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT 189 (189)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred CccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeCC
Confidence 999999999999999999999999876 9999999984
No 31
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.80 E-value=1.2e-18 Score=201.22 Aligned_cols=239 Identities=10% Similarity=0.006 Sum_probs=180.5
Q ss_pred HHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc---------e
Q 001235 617 EMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE---------Q 687 (1117)
Q Consensus 617 ~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~---------~ 687 (1117)
....++++++..++++|.+|+|+|+|+++.+++||+.+|++|+++.+++||++.+.+...+......... .
T Consensus 87 ~~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (361)
T 4f3l_A 87 FTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKN 166 (361)
T ss_dssp HHHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGG
T ss_pred HHHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccCCCCCCCCCcccccccC
Confidence 3456889999999999999999999999999999999999999999999999999998888764321110 1
Q ss_pred eeEEEEEeeccc----cCCceEEEEEEEEEee---------------------cCCCCEEEEEEEEEccchhhhhhhhHh
Q 001235 688 NIQFEIKTHGSK----INDDPITLIVNACASR---------------------DLHDNVVGVCFVAQDITPQKTVMDKFT 742 (1117)
Q Consensus 688 ~~e~~~~~~~~~----~dG~~~~v~v~~~pi~---------------------d~~G~v~gv~~v~~DITerK~aE~~L~ 742 (1117)
...|..+..... ....+.++.+.+.... ...+....++++.++++.+...|....
T Consensus 167 ~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~~i 246 (361)
T 4f3l_A 167 QLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCTV 246 (361)
T ss_dssp EEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEECSC
T ss_pred ceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCcccccccc
Confidence 122222221111 2234444444333221 122345667888899888765442211
Q ss_pred hHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHH
Q 001235 743 RIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLN 822 (1117)
Q Consensus 743 ~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~ 822 (1117)
. ..... .++..|.+|.++++|+++..++||+++|++|+++ ..+.||++...+...+.
T Consensus 247 ~---------~~~~~---f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~-----------~~~iHpdD~~~~~~~~~ 303 (361)
T 4f3l_A 247 E---------EPNEE---FTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSG-----------YDYYHVDDLENLAKCHE 303 (361)
T ss_dssp S---------SSCCE---EEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBG-----------GGGBCHHHHHHHHHHHH
T ss_pred c---------CCcce---eEEEEcCCceEEEECChhhhhhCcCHHHHcCCCH-----------HHeECHHHHHHHHHHHH
Confidence 0 01112 4778899999999999999999999999999984 46778999998888888
Q ss_pred HHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCC-CCCEEEEEeehhHHHHHHHHH
Q 001235 823 KAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDR-EGAVTGVFCFLQLASHELQQA 878 (1117)
Q Consensus 823 ~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITerk~~e 878 (1117)
..+.++.....+++++++||.++|+..++.+++|. +|++.+++|+.+|||+++..+
T Consensus 304 ~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 304 HLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp HHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred HHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 88887777788999999999999999999999998 899999999999999987654
No 32
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.77 E-value=3.3e-18 Score=198.97 Aligned_cols=235 Identities=9% Similarity=0.034 Sum_probs=170.9
Q ss_pred HHHHHHhcCccEEEEeCC-CcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHH----------cC---
Q 001235 618 MVRLIETATVPILAVDVD-GLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLAL----------QG--- 683 (1117)
Q Consensus 618 l~~lie~a~~gi~~~D~d-G~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l----------~g--- 683 (1117)
...++++++..+++++.+ |+|+|+|++++.++||+.+|++|+++.+++||+|.+.+.+.+.... ..
T Consensus 88 ~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~ 167 (387)
T 4f3l_B 88 KHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLP 167 (387)
T ss_dssp HHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHSCC----------------
T ss_pred HHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhcccccCccccccCcccCCc
Confidence 345788899999999987 9999999999999999999999999999999999998887664321 00
Q ss_pred --------------CcceeeEEEEEeeccc-----------------cCCceEEEEEEEEEeec---------------C
Q 001235 684 --------------QEEQNIQFEIKTHGSK-----------------INDDPITLIVNACASRD---------------L 717 (1117)
Q Consensus 684 --------------~~~~~~e~~~~~~~~~-----------------~dG~~~~v~v~~~pi~d---------------~ 717 (1117)
+....+..+++..... +..++.++.+++..... .
T Consensus 168 ~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~ 247 (387)
T 4f3l_B 168 VKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNE 247 (387)
T ss_dssp ----------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-----------------
T ss_pred cCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccC
Confidence 1112233333321100 33455555555433221 1
Q ss_pred CCCEEEEEEEEEccchhhhh--hhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchh
Q 001235 718 HDNVVGVCFVAQDITPQKTV--MDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLL 795 (1117)
Q Consensus 718 ~G~v~gv~~v~~DITerK~a--E~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~ 795 (1117)
.++...+++++++++..... ..++ ...... -++..|.+|.++++|+++..++||+++|++|+.+
T Consensus 248 ~~~~~~lvai~r~~~~~~~~~~~~ei----------~~~~~~---fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~- 313 (387)
T 4f3l_B 248 GCNLSCLVAIGRLHSHMVPQPANGEI----------RVKSME---YVSRHAIDGKFVFVDQRATAILAYLPQELLGTSC- 313 (387)
T ss_dssp --CCCEEEEEEEECCCSCCSCCCSSS----------CBCCCE---EEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBG-
T ss_pred CCcceEEEEEEecccCCCCCCccccc----------ccCCce---EEEEECCCCEEEEECCCcccccCCCHHHHcCCcH-
Confidence 12344677888886543221 1111 112222 4788899999999999999999999999999974
Q ss_pred hhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCC-ceEeEEEEecCCcEEEEEEEEeeeeCC-CCCEEEEEeehhHHHH
Q 001235 796 AEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDP-EKVPFGFFARNGKYAECLLCVNKKLDR-EGAVTGVFCFLQLASH 873 (1117)
Q Consensus 796 ~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~-~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITe 873 (1117)
..+.||++...+...+...+.++.. ...+++++++||.++|+..++.+++|. +|++.+++|+.+|||+
T Consensus 314 ----------~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~ 383 (387)
T 4f3l_B 314 ----------YEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLA 383 (387)
T ss_dssp ----------GGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC-
T ss_pred ----------HHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcch
Confidence 3677899999999999998876554 578999999999999999999999997 8999999999999999
Q ss_pred HHH
Q 001235 874 ELQ 876 (1117)
Q Consensus 874 rk~ 876 (1117)
||+
T Consensus 384 Rk~ 386 (387)
T 4f3l_B 384 NVL 386 (387)
T ss_dssp ---
T ss_pred hhc
Confidence 874
No 33
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.75 E-value=5.3e-18 Score=165.46 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=102.8
Q ss_pred eHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEeccccccccc
Q 001235 965 TLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSV 1044 (1117)
Q Consensus 965 ~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~ 1044 (1117)
++.+.+..+. ..+..+++++.++.+...+ .....++..|.+++.||+.||+||++ .+.|.|++...++
T Consensus 3 ~l~~~l~~~~----~~~~~~~i~~~~~~~~~~~-~~~~~~~~~l~~il~nll~Na~k~~~-~~~i~i~~~~~~~------ 70 (128)
T 3ehg_A 3 RLKDELINIK----QILEAADIMFIYEEEKWPE-NISLLNENILSMCLKEAVTNVVKHSQ-AKTCRVDIQQLWK------ 70 (128)
T ss_dssp CHHHHHHHHH----HHHHHTTCEEECCCCSCCS-CCCHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEEEEEETT------
T ss_pred cHHHHHHHHH----HHHHHcCCEEEEEcCcccc-ccCHHHHHHHHHHHHHHHHHHHhcCC-CcEEEEEEEEeCC------
Confidence 4555555444 4455678888888775432 23456889999999999999999997 5889999888776
Q ss_pred ceeEEEEEEeecCCCCChhhhhhccCCCCCCCCccccHHHHHHHHHHcCCEEEEEeeCCeEEEEEEEeccC
Q 001235 1045 HLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAA 1115 (1117)
Q Consensus 1045 ~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~GtGLGL~ivr~iVe~~gG~I~v~s~~g~ttF~i~LPl~~ 1115 (1117)
.+.|+|+|||+|||++.. +|+|+||++||++++.|||+|++.|.+ +|+|+++||+..
T Consensus 71 ---~~~i~V~D~G~Gi~~~~~----------~g~GlGL~~~~~~~~~~gG~i~~~s~~-Gt~~~i~lP~~~ 127 (128)
T 3ehg_A 71 ---EVVITVSDDGTFKGEENS----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPNNS 127 (128)
T ss_dssp ---EEEEEEEESSCCCSCSSC----------CCTTSHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC--
T ss_pred ---EEEEEEEECCcCcCcccC----------CCCCccHHHHHHHHHHcCCEEEEEeCC-CEEEEEEEecCC
Confidence 899999999999998753 689999999999999999999999999 899999999863
No 34
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.72 E-value=4.6e-17 Score=161.06 Aligned_cols=138 Identities=9% Similarity=0.050 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCC--ccccccccCcHHHHHHHHHHHHcCCcc
Q 001235 609 KELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGK--HFLTLVEDSSIDTVKRMLYLALQGQEE 686 (1117)
Q Consensus 609 ~eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~--~~~dlv~~~~~~~~~~~l~~~l~g~~~ 686 (1117)
++|++++++|+.++++++.++|.+|.++.+++||+++.+++||+.+++.+. .+.+++||++.+.+...+..++.++..
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~ 81 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCc
Confidence 357778889999999999999999999999999999999999999998773 466899999999999999998887766
Q ss_pred eeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHH
Q 001235 687 QNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKA 750 (1117)
Q Consensus 687 ~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~ 750 (1117)
...++++. +++|..+|+..++.|++|.+|++.+++|+++|||++|++|++|++++++|+.
T Consensus 82 ~~~e~r~~----~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~ 141 (142)
T 3mr0_A 82 YDVEYRVR----TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRR 141 (142)
T ss_dssp EEEEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEE----CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhc
Confidence 55555554 7799999999999999999999999999999999999999999999999875
No 35
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.71 E-value=7.1e-17 Score=157.29 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=103.3
Q ss_pred eEEeeHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEeccccc
Q 001235 961 MVEFTLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQL 1040 (1117)
Q Consensus 961 ~~~~~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~ 1040 (1117)
...++|.++++.++..+ ..+++.+.++++..... ....|+..|.+++.||+.||+||++ ++.|.|++....
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~NA~k~~~-~~~i~i~~~~~~--- 72 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSV-VDSALADQAEAVVREAVSNAVRHAA-ASTLTVRVKVDD--- 72 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGG-SCHHHHHHHHHHHHHHHHHCCCCSS-CCEEEEEEEESS---
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCccc-CCHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEEEEcC---
Confidence 35778999999988877 55667777777665432 3445688999999999999999996 688888876532
Q ss_pred ccccceeEEEEEEeecCCCCChhhhhhccCCCCCCCCccccHHHHHHHHHHcCCEEEEEeeCC-e-EEEEEEEeccC
Q 001235 1041 GQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAG-K-STFIVSVELAA 1115 (1117)
Q Consensus 1041 ~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~GtGLGL~ivr~iVe~~gG~I~v~s~~g-~-ttF~i~LPl~~ 1115 (1117)
. +.|+|.|+|+||+++. +|+||++||++++.|||++.+.+.++ + ++|+++||+.+
T Consensus 73 ------~-~~i~v~D~G~gi~~~~-------------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~~ 129 (129)
T 3zxo_A 73 ------D-LCIEVTDNGRGMPDEF-------------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLSQ 129 (129)
T ss_dssp ------E-EEEEEEECCCCCTTTT-------------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESCC
T ss_pred ------C-EEEEEecCCCCCCccc-------------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCCC
Confidence 2 8899999999999864 69999999999999999999999998 4 99999999864
No 36
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1e-15 Score=147.94 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=97.2
Q ss_pred eHHHHHHHHHHHHHhhhcccCcEEEEeecCCCcceeEEecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEeccccccccc
Q 001235 965 TLNEVLVASISQVMMKSNAKGIRIVNETAEQIMSETLYGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSV 1044 (1117)
Q Consensus 965 ~L~~li~~v~~~~~~~~~~~~i~i~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~ 1044 (1117)
++.+.+.+++..+ ...++++.++++...+. ....++..|.+++.||+.||+||++ .+.|.|++...+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~-~~~i~i~~~~~~------- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSV-VDTVLANHAEAVLREAVSNAVRHAN-ATSLAINVSVED------- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGG-CCHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEEEEEEE-------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCcccc-ccHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEEEeCC-------
Confidence 4666777776666 45666776666554332 3345588999999999999999998 578888776532
Q ss_pred ceeEEEEEEeecCCCCChhhhhhccCCCCCCCCccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEecc
Q 001235 1045 HLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVELA 1114 (1117)
Q Consensus 1045 ~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~ 1114 (1117)
. +.|+|+|||+|||++. .|+||++||++++.|||++.+.+.+++ ++|+++||+.
T Consensus 69 --~-~~i~v~D~G~gi~~~~-------------~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 69 --D-VRVEVVDDGVGISGDI-------------TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp --E-EEEEEEECCCSSCGGG-------------SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred --C-EEEEEEECCCCCCccc-------------cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 3 7899999999999875 399999999999999999999999886 9999999985
No 37
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.65 E-value=1.4e-15 Score=172.30 Aligned_cols=222 Identities=14% Similarity=0.141 Sum_probs=162.2
Q ss_pred cEEEEe-CCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCc--------ceeeEEEEEeecc
Q 001235 628 PILAVD-VDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQE--------EQNIQFEIKTHGS 698 (1117)
Q Consensus 628 gi~~~D-~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~--------~~~~e~~~~~~~~ 698 (1117)
-+++++ .+|+|+|+|+.+..++||+.++++|+++.+++||+|.+.+...+...+.... ...+-.++..+..
T Consensus 5 F~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~~ 84 (339)
T 3rty_A 5 FCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYR 84 (339)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECCC
T ss_pred EEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEeccC
Confidence 356778 6999999999999999999999999999999999999987766654321110 1122233221100
Q ss_pred ------------ccCCceEEEEEEEEEeecC---------CCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCC
Q 001235 699 ------------KINDDPITLIVNACASRDL---------HDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNP 757 (1117)
Q Consensus 699 ------------~~dG~~~~v~v~~~pi~d~---------~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~ 757 (1117)
.+...+.|+..+..++.++ .|+...++.++.+++.......++.. ....+
T Consensus 85 ~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e~~~---------~~~~~ 155 (339)
T 3rty_A 85 GLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEILS---------QKSPK 155 (339)
T ss_dssp -------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTBBCC---------SSCCE
T ss_pred CCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccchhhc---------cCCce
Confidence 1223344555555555555 57778889999999976554332100 01122
Q ss_pred CCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCC-----ce
Q 001235 758 LIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDP-----EK 832 (1117)
Q Consensus 758 li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~-----~~ 832 (1117)
.++..|.+|.++++|+++..++||+++|++|+.. ..+.||+++..+...+...+..+.. ..
T Consensus 156 ---fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~-----------~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s 221 (339)
T 3rty_A 156 ---FAIRHTATGIISHVDSAAVSALGYLPQDLIGRSI-----------MDFYHHEDLSVMKETYETVMKKGQTAGASFCS 221 (339)
T ss_dssp ---EEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBG-----------GGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBC
T ss_pred ---EEEEECCCCeEEEcChhhhcccCCCHHHHcCCcH-----------HHEECHHHHHHHHHHHHHHHHcCCcccccccc
Confidence 5788899999999999999999999999999984 3667899998888888888764443 46
Q ss_pred EeEEEEecCCcEEEEEEEEeeeeCCC-CCEEEEEeehhHHH
Q 001235 833 VPFGFFARNGKYAECLLCVNKKLDRE-GAVTGVFCFLQLAS 872 (1117)
Q Consensus 833 ~e~~~~~~dG~~~~v~~~~~pi~d~~-G~v~g~v~i~~DIT 872 (1117)
.+++++++||.++|++.+.++++|.. +++..++|..+.++
T Consensus 222 ~~yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~ 262 (339)
T 3rty_A 222 KPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQ 262 (339)
T ss_dssp CCEEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEE
T ss_pred eEEEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECC
Confidence 79999999999999999999999865 57778888777666
No 38
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.61 E-value=4.1e-15 Score=144.66 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=102.5
Q ss_pred HHHHHhcCccEEEEeCCC---cEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEe
Q 001235 619 VRLIETATVPILAVDVDG---LVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKT 695 (1117)
Q Consensus 619 ~~lie~a~~gi~~~D~dG---~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~ 695 (1117)
+.++++++++|+++|.+| +|+++|+++++++||+.++++|+++..+.++.........+...+..+.....++.
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~--- 78 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQ--- 78 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE---
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEE---
Confidence 357899999999999977 99999999999999999999999998777766555544555555554444333333
Q ss_pred eccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHH
Q 001235 696 HGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAI 751 (1117)
Q Consensus 696 ~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i 751 (1117)
..++||+.+|+.++..|+++.+ +.+++++++|||++|++|++|++++++++.+
T Consensus 79 -~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 79 -NYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp -EECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred -EEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 3478999999999999999876 8899999999999999999999999988754
No 39
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.61 E-value=4.9e-15 Score=141.53 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEE
Q 001235 615 TSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIK 694 (1117)
Q Consensus 615 ~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~ 694 (1117)
+++|+.++++++++|+++|.+|+|+++|+++++++||+.++++|+++..+.++.........+...+..+.....++.
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-- 81 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLV-- 81 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEE--
T ss_pred HHHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEE--
Confidence 457889999999999999999999999999999999999999999999888776655555555555555544333333
Q ss_pred eeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhh
Q 001235 695 THGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQK 735 (1117)
Q Consensus 695 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK 735 (1117)
.++++|..+|+.++..|++|.+|++.+++++++|||++|
T Consensus 82 --~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 82 --NRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp --EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred --EEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 347899999999999999999999999999999999986
No 40
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.61 E-value=4.9e-15 Score=148.34 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhcCccEEEEe-CCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCccee-eEE
Q 001235 614 VTSEMVRLIETATVPILAVD-VDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQN-IQF 691 (1117)
Q Consensus 614 ~~~~l~~lie~a~~gi~~~D-~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~-~e~ 691 (1117)
.+++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++..+.... .+.
T Consensus 15 ~~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 15 AAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 34678999999999999999 9999999999999999999 8999999999998877777778888885554432 223
Q ss_pred EEEeeccccC-CceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCC
Q 001235 692 EIKTHGSKIN-DDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPN 756 (1117)
Q Consensus 692 ~~~~~~~~~d-G~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~ 756 (1117)
.+... ...+ |..+|+.++..|+++.+|.+.|++++++|||++|++|++|++....++..++++.
T Consensus 93 ~~~~~-~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~v~~~~ 157 (158)
T 3k3c_A 93 RLQTD-YDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVR 157 (158)
T ss_dssp EEEEE-SSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEec-cCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33222 1123 6779999999999999999999999999999999999999999999988887664
No 41
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.61 E-value=1.9e-15 Score=165.44 Aligned_cols=191 Identities=12% Similarity=0.028 Sum_probs=118.3
Q ss_pred EeecCCCCEEEEEEEEEc------cchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCC---CCceeechhhHHHhcC
Q 001235 713 ASRDLHDNVVGVCFVAQD------ITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDE---FGWCCEWNPAMVKLTG 783 (1117)
Q Consensus 713 pi~d~~G~v~gv~~v~~D------ITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G 783 (1117)
+++|++++...+.....+ +.....+++++++++++|+.+++++++ +|+++|. +|+|++||+++++++|
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~l~G 100 (258)
T 3p7n_A 24 DLYDDDDKDHPFTMGQDRPIDGSGAPGADDTRVEVQPPAQWVLDLIEASPI---ASVVSDPRLADNPLIAINQAFTDLTG 100 (258)
T ss_dssp -------------------------------------CCHHHHHHHHTCSS---EEEEECTTSTTCCEEEECHHHHHHHC
T ss_pred CccccCCCcCceeccCCCCCCcccCCcchhhHHHHHhHHHHHHHHHhcCCc---cEEEEcCCCCCCcEEEEhHHHHHHcC
Confidence 455655555544433333 334445566689999999999999999 8999999 8999999999999999
Q ss_pred CChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEE
Q 001235 784 WKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTG 863 (1117)
Q Consensus 784 ~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g 863 (1117)
|+++|++|+.+. .+.++++...+...+...+..+..+..++.+.++||..+|+.+++.|++|.+|.+.+
T Consensus 101 ~~~~el~g~~~~-----------~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~ 169 (258)
T 3p7n_A 101 YSEEECVGRNCR-----------FLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLY 169 (258)
T ss_dssp CCGGGTTTSCGG-----------GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEE
T ss_pred CCHHHHCCCChh-----------hccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEE
Confidence 999999999842 223344444555566777777788889999999999999999999999999999999
Q ss_pred EEeehhHHHHHHHH--HHHHHHHHHHHH---HHHHHH---------HHHHHhhhhhhHHHHHHHHHHH
Q 001235 864 VFCFLQLASHELQQ--ALHVQRLSEQTA---LKRLKA---------LAYTKRQIRNPLSGIIFSRKMM 917 (1117)
Q Consensus 864 ~v~i~~DITerk~~--e~el~~~ae~~~---~~k~~~---------la~isHEIrnPL~~I~~~~~LL 917 (1117)
++++++|||++|+. +.+++...+... ...... ...++|++..++..|...+..+
T Consensus 170 ~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i 237 (258)
T 3p7n_A 170 FLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLV 237 (258)
T ss_dssp EEEEEEEC-------CHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999999443 333222221111 001111 3556777777777777655444
No 42
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.61 E-value=2.4e-15 Score=148.66 Aligned_cols=137 Identities=10% Similarity=0.134 Sum_probs=116.6
Q ss_pred hhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHH
Q 001235 739 DKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLG 818 (1117)
Q Consensus 739 ~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~ 818 (1117)
++|++++++|+.++++++. ++|.+|.++.+++||+++.+++||+++++.+.. ..+..+.||++...+.
T Consensus 2 ~aL~~se~rl~~~~~~~~~---g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~---------~~~~~~ihpdD~~~~~ 69 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASA---GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEI---------TGHRESIHPDDRARVL 69 (142)
T ss_dssp -------CCHHHHHHHTTC---EEEEECTTTCCEEECHHHHHHTTCCGGGSCSEE---------C---CCBCTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---EEEEEEcCCCeEEECHHHHHHhCCCccccCCCH---------HHHHhhcCHHHHHHHH
Confidence 4688899999999999998 899999999999999999999999998876643 1244677899999999
Q ss_pred HHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHHHHHH
Q 001235 819 IVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQ 887 (1117)
Q Consensus 819 ~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~~ae~ 887 (1117)
..+..++.++.++..++++.++||.++|+..++.+++|.+|.+.+++|+++|||++|++|.++++..++
T Consensus 70 ~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~ 138 (142)
T 3mr0_A 70 AALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREE 138 (142)
T ss_dssp HHHHHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHH
Confidence 999999998888999999999999999999999999999999999999999999999999887776553
No 43
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.60 E-value=1.7e-15 Score=154.84 Aligned_cols=128 Identities=13% Similarity=0.056 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCccEEEEeCC---CcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeE
Q 001235 614 VTSEMVRLIETATVPILAVDVD---GLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQ 690 (1117)
Q Consensus 614 ~~~~l~~lie~a~~gi~~~D~d---G~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e 690 (1117)
..++++.++++++++|+++|.+ |+|++||+++++++||+.++++|+++.+++++++.......+...+..+.....+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 5 QFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 3467889999999999999999 9999999999999999999999999999998888887777777777666554444
Q ss_pred EEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHH
Q 001235 691 FEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIE 745 (1117)
Q Consensus 691 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se 745 (1117)
+.. .+++|..+|+.++..|+++.+|.+.+++++++|||++|++|++++...
T Consensus 85 ~~~----~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~~~a~ 135 (176)
T 4hia_A 85 LRN----YRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAAAAGH 135 (176)
T ss_dssp EEE----ECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHHHHHH
T ss_pred EEE----EcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHHHHhh
Confidence 443 378999999999999999999999999999999999999999844433
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.59 E-value=2e-15 Score=165.28 Aligned_cols=175 Identities=14% Similarity=0.124 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcC
Q 001235 607 GMKELEAVTSEMVRLIETATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQG 683 (1117)
Q Consensus 607 ~~~eL~~~~~~l~~lie~a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g 683 (1117)
..+++++.+++|+.++++++++|+++|. +|+|++||+++++++||+.++++|+++.+++++++...+...+...+..
T Consensus 54 ~~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~ 133 (258)
T 3p7n_A 54 TRVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVRE 133 (258)
T ss_dssp -------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHc
Confidence 4456777888999999999999999999 9999999999999999999999999999999988888777777777766
Q ss_pred CcceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchh--hhhhhhHhhHHHHHHHHHhCCCCCCCC
Q 001235 684 QEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQ--KTVMDKFTRIEGDYKAIVQNPNPLIPP 761 (1117)
Q Consensus 684 ~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITer--K~aE~~L~~se~~l~~i~~~~~~li~~ 761 (1117)
+.....++.. .++||..+|+.++..|++|.+|.+.+++++++|||++ ++.+.++...+..+..+.+....
T Consensus 134 ~~~~~~e~~~----~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~---- 205 (258)
T 3p7n_A 134 HKPVLVEILN----YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLE---- 205 (258)
T ss_dssp TCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHH----
T ss_pred CCCeEEEEEE----EcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHH----
Confidence 6554444443 4789999999999999999999999999999999999 55554444433333211110000
Q ss_pred eeeeCCCCceeechhhHHHhcCCChhhHhhc
Q 001235 762 IFGSDEFGWCCEWNPAMVKLTGWKREEVIDK 792 (1117)
Q Consensus 762 I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk 792 (1117)
++.....| ..|..+++.+|++...+...
T Consensus 206 i~~~~~~g---~~~~eia~~l~~s~~tv~~~ 233 (258)
T 3p7n_A 206 VTTLVASG---LRNKEVAARLGLSEKTVKMH 233 (258)
T ss_dssp HHHHHHTT---CCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcC---CCHHHHHHHHCcCHHHHHHH
Confidence 11111122 37899999999998887664
No 45
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.59 E-value=5.1e-15 Score=141.35 Aligned_cols=115 Identities=8% Similarity=0.134 Sum_probs=98.5
Q ss_pred HHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHc-CCcceeeEEEEEee
Q 001235 618 MVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQ-GQEEQNIQFEIKTH 696 (1117)
Q Consensus 618 l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~-g~~~~~~e~~~~~~ 696 (1117)
+..+++++++.++.+|.+|+|+++|+++++++||++++++|+++.+++||++.+.+...+..++. ++.....++++.
T Consensus 4 ~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~-- 81 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFR-- 81 (121)
T ss_dssp ----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEE--
T ss_pred ccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEE--
Confidence 45688999999999999999999999999999999999999999999999999999999988885 344444444444
Q ss_pred ccccCCceEEEEEEEEEeecC-CCCEEEEEEEEEccchhhh
Q 001235 697 GSKINDDPITLIVNACASRDL-HDNVVGVCFVAQDITPQKT 736 (1117)
Q Consensus 697 ~~~~dG~~~~v~v~~~pi~d~-~G~v~gv~~v~~DITerK~ 736 (1117)
+++|+.+|+.+++.|++|. +|++.+++++.+|||++|+
T Consensus 82 --~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 82 --SKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp --CTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred --ecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 7899999999999999998 8999999999999999986
No 46
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.57 E-value=7.4e-15 Score=152.30 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCccEEEEe-CCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCccee-eE
Q 001235 613 AVTSEMVRLIETATVPILAVD-VDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQN-IQ 690 (1117)
Q Consensus 613 ~~~~~l~~lie~a~~gi~~~D-~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~-~e 690 (1117)
..+++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++..+.... .+
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSE 111 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccc
Confidence 445678999999999999999 9999999999999999999 9999999999988776666677777775444422 22
Q ss_pred EEEEeecccc-C-CceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhh----HhhHHHHHHHHHhCCCC
Q 001235 691 FEIKTHGSKI-N-DDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDK----FTRIEGDYKAIVQNPNP 757 (1117)
Q Consensus 691 ~~~~~~~~~~-d-G~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~----L~~se~~l~~i~~~~~~ 757 (1117)
+.+.. .++ + |..+|+.++..|++|.+|.+.|++++++|||++|++|++ |++++.+++.++++++.
T Consensus 112 ~~~~~--~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~~~~~ 182 (185)
T 3kx0_X 112 WRLQT--DYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATV 182 (185)
T ss_dssp EEEC----------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC----------------------
T ss_pred eeEEe--eccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33321 122 2 778999999999999999999999999999999999999 99999999999988764
No 47
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.56 E-value=1.7e-14 Score=136.74 Aligned_cols=122 Identities=12% Similarity=0.147 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccC--CccccccccCcHHHHHHHHHHHHcCCccee
Q 001235 611 LEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIG--KHFLTLVEDSSIDTVKRMLYLALQGQEEQN 688 (1117)
Q Consensus 611 L~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG--~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~ 688 (1117)
|+.++++|+.+++++++++|.+|.+|.++++|+++++++|++.++++| ..+.++++|++.+.+...+..++.++....
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFD 81 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCce
Confidence 456678899999999999999999999999999999999999999999 667788999999999999999988877655
Q ss_pred eEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhh
Q 001235 689 IQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKT 736 (1117)
Q Consensus 689 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~ 736 (1117)
.++++. +++|..+|+.++..|+++.+|++.+++++++|||++|+
T Consensus 82 ~e~~~~----~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 82 VEYRIV----RPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred EEEEEE----CCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 555544 67899999999999999999999999999999999985
No 48
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.56 E-value=1.2e-14 Score=144.62 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=85.8
Q ss_pred ecHHHHHHHHHHHHHHHhhccCC---CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC----
Q 001235 1003 GDSIRLQQVLADFLSISINFVPN---GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT---- 1075 (1117)
Q Consensus 1003 ~D~~~L~qVL~nLl~NAik~~~~---~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~---- 1075 (1117)
.|...+.+++.||+.||++|+.. ++.|.|++...++ .+.|+|.|+|.||+ .++++|++|+++
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~---------~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~~ 103 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG---------VVHLTVRDEGVGIP--DIEEARQPLFTTKPEL 103 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT---------EEEEEEEECSSCCS--CHHHHTCCC-------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC---------EEEEEEEECCCCcC--hHHHhhcccccCCCCC
Confidence 57889999999999999999975 5899999888776 89999999999999 788999999755
Q ss_pred CCccccHHHHHHHHHHcCCEEEEEeeCCe-EEEEEEEeccCC
Q 001235 1076 SEEGISLLISRKLVKLMNGDVQYLREAGK-STFIVSVELAAA 1116 (1117)
Q Consensus 1076 ~GtGLGL~ivr~iVe~~gG~I~v~s~~g~-ttF~i~LPl~~a 1116 (1117)
+|.|+||++|+++++ ++.+.+.+++ |+|++++|+.++
T Consensus 104 ~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 104 ERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHH 141 (145)
T ss_dssp CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC--
T ss_pred CCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccc
Confidence 478999999999988 9999999876 999999999764
No 49
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.55 E-value=1e-14 Score=146.72 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcC
Q 001235 607 GMKELEAVTSEMVRLIETATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQG 683 (1117)
Q Consensus 607 ~~~eL~~~~~~l~~lie~a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g 683 (1117)
..++++...++++.++++++++++++|. +|+|+++|+++++++||+.++++|+++..++++++.......+...+..
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (166)
T 3ue6_A 26 ANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITK 105 (166)
T ss_dssp -----CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhc
Confidence 3445556667889999999999999999 7999999999999999999999999999898888877777777777766
Q ss_pred CcceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhH
Q 001235 684 QEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKF 741 (1117)
Q Consensus 684 ~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L 741 (1117)
+.....++.. .+++|..+|+.++..|+++.+|.+.|++++++|||++|+++...
T Consensus 106 ~~~~~~e~~~----~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~~ 159 (166)
T 3ue6_A 106 GVDTSVCLLN----YRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLVN 159 (166)
T ss_dssp TCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHHH
T ss_pred CCceEEEEEE----EcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHHH
Confidence 5554444443 36799999999999999999999999999999999999988763
No 50
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.53 E-value=3e-14 Score=136.49 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=98.5
Q ss_pred HHHhcCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeec
Q 001235 621 LIETATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHG 697 (1117)
Q Consensus 621 lie~a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~ 697 (1117)
++++++++++++|. +|+|+++|+++++++|++.++++|+++.+++++.+.......+...+..+.....++.+.
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--- 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY--- 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE---
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE---
Confidence 46789999999999 999999999999999999999999999999988877777777777776665544444443
Q ss_pred cccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHH
Q 001235 698 SKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGD 747 (1117)
Q Consensus 698 ~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~ 747 (1117)
+++|..+|+.++..|+.+.+|.+.|++++++|||++|++|++..+.+.+
T Consensus 79 -~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 79 -KKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp -CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred -cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 6789999999999999999999999999999999999999998887654
No 51
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.53 E-value=2.9e-14 Score=135.07 Aligned_cols=110 Identities=8% Similarity=0.030 Sum_probs=98.4
Q ss_pred hcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCCc
Q 001235 624 TATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDD 703 (1117)
Q Consensus 624 ~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG~ 703 (1117)
.+++.++..|.+|+++++|+++++++||++++++|+++.+++||++.+.+...+..++.++.....++++. +++|+
T Consensus 7 ~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~----~~dG~ 82 (117)
T 3f1p_A 7 DSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRML----AKHGG 82 (117)
T ss_dssp GGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEE----CTTSS
T ss_pred CCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEE----ecCCC
Confidence 35678999999999999999999999999999999999999999999999999999888776655555554 78999
Q ss_pred eEEEEEEEEEeecC-CCCEEEEEEEEEccchhhhh
Q 001235 704 PITLIVNACASRDL-HDNVVGVCFVAQDITPQKTV 737 (1117)
Q Consensus 704 ~~~v~v~~~pi~d~-~G~v~gv~~v~~DITerK~a 737 (1117)
.+|+.+++.|++|. +|.+.+++++.+|||++|+.
T Consensus 83 ~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 83 YVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred EEEEEEeeEEEECCCCCCceEEEEEeeeccccccC
Confidence 99999999999998 89999999999999999863
No 52
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.51 E-value=6.4e-14 Score=140.59 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcce
Q 001235 608 MKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQ 687 (1117)
Q Consensus 608 ~~eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~ 687 (1117)
.++++..+..+..+++++++||+++|.+|+|++||+++++++|++.++++|+++.++++. ....+...+..++.++.+.
T Consensus 14 ~~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~ 92 (152)
T 3mxq_A 14 SNAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSS 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCce
Confidence 346778888899999999999999999999999999999999999999999999999988 8888888899998877653
Q ss_pred eeEEEE-------Ee-eccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhh
Q 001235 688 NIQFEI-------KT-HGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVM 738 (1117)
Q Consensus 688 ~~e~~~-------~~-~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE 738 (1117)
...++. .. +...++|...|+.++..|++|++|++.|++.+++|||+++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 93 FSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 222111 11 1123457788999999999999999999999999999998764
No 53
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.50 E-value=4.6e-13 Score=150.16 Aligned_cols=223 Identities=10% Similarity=0.019 Sum_probs=154.2
Q ss_pred HHHhcCccEEEEeCC-CcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHH--------------HcCCc
Q 001235 621 LIETATVPILAVDVD-GLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLA--------------LQGQE 685 (1117)
Q Consensus 621 lie~a~~gi~~~D~d-G~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~--------------l~g~~ 685 (1117)
+++++..-+++++.+ |+|+|+|+.+..++||+.++++|+++.+++||+|+..+...+... .....
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~~ 110 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECAP 110 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHTCTTTCCCCC----------CCC
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhhcccCCCCcCCCcccccccCCCC
Confidence 566777778888886 999999999999999999999999999999999999887765110 01122
Q ss_pred ceeeEEEEEeeccccCCceEEEEEEEEEee--c---CCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCC
Q 001235 686 EQNIQFEIKTHGSKINDDPITLIVNACASR--D---LHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIP 760 (1117)
Q Consensus 686 ~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~--d---~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~ 760 (1117)
...+-.+++.....++.++.++.++..... . .++....++.+.+=.+.-+..++.+ .. ..
T Consensus 111 ~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~~~~-----------~~-~~--- 175 (317)
T 4dj3_A 111 AKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRIPV-----------DK-RI--- 175 (317)
T ss_dssp CCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSCCCG-----------GG-CE---
T ss_pred CceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCCccc-----------CC-Cc---
Confidence 233334444221122224445554432211 1 1223333344433222221111111 11 11
Q ss_pred CeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCC---ceEeEEE
Q 001235 761 PIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDP---EKVPFGF 837 (1117)
Q Consensus 761 ~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~---~~~e~~~ 837 (1117)
-+...+.+|+++++|+++..++||.++|++|+... .+.||+|...+...+.+.+.++.. ...++|+
T Consensus 176 Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~-----------~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~ 244 (317)
T 4dj3_A 176 FTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSIL-----------TYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRF 244 (317)
T ss_dssp EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-----------GGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEE
T ss_pred eEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHH-----------HeECHHHHHHHHHHHHHHHHcCCCccccceEEEE
Confidence 36778899999999999999999999999999853 667888988888888888887554 4689999
Q ss_pred EecCCcEEEEEEEEeeeeCC-CCCEEEEEeehh
Q 001235 838 FARNGKYAECLLCVNKKLDR-EGAVTGVFCFLQ 869 (1117)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~ 869 (1117)
+++||.++|++.+..+++|. .+++..++|..+
T Consensus 245 ~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~ 277 (317)
T 4dj3_A 245 CTQNGEYVILDSSWSSFVNPWSRKVSFIIGRHK 277 (317)
T ss_dssp ECTTSCEEEEEEEEEEEECSSSCCEEEEEEEEE
T ss_pred EccCCCEEEEEEEEEEEECCCCCcccEEEEEEE
Confidence 99999999999999999986 566777777655
No 54
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.49 E-value=4.9e-14 Score=134.51 Aligned_cols=118 Identities=16% Similarity=0.025 Sum_probs=98.0
Q ss_pred HHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHH
Q 001235 744 IEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNK 823 (1117)
Q Consensus 744 se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (1117)
++++++.+++++++ +|++.|.+|+|+++|+++++++||+++|++|++... +. +++........+..
T Consensus 3 ~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~-l~----------~~~~~~~~~~~~~~ 68 (120)
T 2gj3_A 3 LPEIFRQTVEHAPI---AISITDLKANILYANRAFRTITGYGSEEVLGKNESI-LS----------NGTTPRLVYQALWG 68 (120)
T ss_dssp CHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGG-GC----------CTTSCHHHHHHHHH
T ss_pred hHHHHHHHHHhCCC---eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHH-cC----------CCCCCHHHHHHHHH
Confidence 45688999999998 899999999999999999999999999999997532 21 12222223334555
Q ss_pred HhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHH
Q 001235 824 AMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHEL 875 (1117)
Q Consensus 824 ~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk 875 (1117)
.+..+..+..++...++||+.+|+.++..|+++.+|.+.+++++++|||++|
T Consensus 69 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 69 RLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp HHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred HHHcCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 6666778888999999999999999999999999999999999999999753
No 55
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.49 E-value=1.1e-13 Score=134.03 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCC
Q 001235 605 IEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQ 684 (1117)
Q Consensus 605 ~~~~~eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~ 684 (1117)
.+.+++|++.++.|+.++++++++|+++|.+|+|++||++++++|||+.+|++|+++.+++++++.......+......+
T Consensus 5 ~~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~ 84 (130)
T 1d06_A 5 LETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATG 84 (130)
T ss_dssp HHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcC
Confidence 45678888888999999999999999999999999999999999999999999999999988887776666665554333
Q ss_pred cc----eeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 685 EE----QNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 685 ~~----~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
.. ...++. ..++||+.+|+.++..|+.+.+ ..+++++++|||
T Consensus 85 ~~~~~~~~~e~~----~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 85 EKRIIGIDRVVS----GQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp CCSSTTSCEEEE----EECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred CccccCCeeEEE----EEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 22 112332 3488999999999999998743 346888999998
No 56
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.48 E-value=1.8e-13 Score=136.95 Aligned_cols=132 Identities=11% Similarity=0.092 Sum_probs=112.1
Q ss_pred HHHHHHHHHhcCccEEEEeCCC---cEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEE
Q 001235 615 TSEMVRLIETATVPILAVDVDG---LVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQF 691 (1117)
Q Consensus 615 ~~~l~~lie~a~~gi~~~D~dG---~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~ 691 (1117)
++.++.++++++++++++|.+| +|+++|+++++++|++.++++|+++.+++++.........+...+..+.....++
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 3568889999999999999999 9999999999999999999999999999888777776666777776655544444
Q ss_pred EEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHH
Q 001235 692 EIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKA 750 (1117)
Q Consensus 692 ~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~ 750 (1117)
.+. +++|..+|+.++..|+.+.+|.+.+++++++|||++|+++++++++++.++.
T Consensus 104 ~~~----~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~~ 158 (162)
T 3sw1_A 104 RNY----RKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPKP 158 (162)
T ss_dssp EEE----CTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC----
T ss_pred EEE----CCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 433 6789999999999999999999999999999999999999999988877654
No 57
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.48 E-value=5.3e-14 Score=167.45 Aligned_cols=108 Identities=12% Similarity=0.230 Sum_probs=91.0
Q ss_pred EEec-HHHHHHHHHHHHHHHhhccCCCC---eEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCC---
Q 001235 1001 LYGD-SIRLQQVLADFLSISINFVPNGG---QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG--- 1073 (1117)
Q Consensus 1001 v~~D-~~~L~qVL~nLl~NAik~~~~~g---~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~--- 1073 (1117)
+..+ +.+|.|+|.||+.||++|++.++ .|.|++...+. . ...+.|+|.|||+|||++.++++|++|+
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~--~----~~~~~I~V~DnG~GI~~e~l~~iF~~f~~ts 97 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--A----RQIYKVNVVDNGIGIPPQEVPNAFGRVLYSS 97 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET--T----TTEEEEEEECCSCCCCGGGSHHHHTSCCCSC
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC--c----CceEEEEEEECCCCCCHHHHHHHhccccccC
Confidence 4444 59999999999999999998777 88888876541 0 0178999999999999999999999983
Q ss_pred ------CCCCccccHHHHHHHHHHcCCE-EEEEeeCCe-E-EEEEEEecc
Q 001235 1074 ------DTSEEGISLLISRKLVKLMNGD-VQYLREAGK-S-TFIVSVELA 1114 (1117)
Q Consensus 1074 ------~~~GtGLGL~ivr~iVe~~gG~-I~v~s~~g~-t-tF~i~LPl~ 1114 (1117)
+.+|+|+||++|+.+++.|||+ |++.|.+++ + +|+|+||+.
T Consensus 98 k~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~ 147 (530)
T 2zbk_B 98 KYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 147 (530)
T ss_dssp CCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEE
T ss_pred CcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEec
Confidence 2247999999999999999999 999998766 4 888888875
No 58
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.48 E-value=6.4e-14 Score=165.04 Aligned_cols=109 Identities=12% Similarity=0.216 Sum_probs=92.5
Q ss_pred eEEecHHHHHHHHHHHHHHHhhccCCCC---eEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCC---
Q 001235 1000 TLYGDSIRLQQVLADFLSISINFVPNGG---QLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG--- 1073 (1117)
Q Consensus 1000 ~v~~D~~~L~qVL~nLl~NAik~~~~~g---~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~--- 1073 (1117)
...+|+.+|.|||.||+.||++|++.++ .|.|++...+. . ...+.|+|.|||+|||++.++++|++|+
T Consensus 25 ~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~--~----~~~~~I~V~DnG~GI~~e~l~~iF~~f~~ts 98 (471)
T 1mu5_A 25 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--A----RQIYKVNVVDNGIGIPPQEVPNAFGRVLYSS 98 (471)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET--T----TTEEEEEEECCSCCCCGGGHHHHHHCCCCC-
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC--c----CcEEEEEEEECCCCCCHHHHHHHhccccccc
Confidence 3557889999999999999999998766 89988876541 0 0178999999999999999999999984
Q ss_pred ------CCCCccccHHHHHHHHHHcCCE-EEEEeeCCe-E-EEEEEEecc
Q 001235 1074 ------DTSEEGISLLISRKLVKLMNGD-VQYLREAGK-S-TFIVSVELA 1114 (1117)
Q Consensus 1074 ------~~~GtGLGL~ivr~iVe~~gG~-I~v~s~~g~-t-tF~i~LPl~ 1114 (1117)
..+|+||||++|+.+++.|||+ |++.|.+++ + +|+|+||+.
T Consensus 99 k~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 99 KYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 148 (471)
T ss_dssp CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEC
T ss_pred ccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecc
Confidence 2237999999999999999999 999998776 4 888888875
No 59
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.48 E-value=1.6e-13 Score=129.57 Aligned_cols=111 Identities=9% Similarity=-0.007 Sum_probs=95.7
Q ss_pred cCccEEEEe-CCCcEEeecHHHHHHcCCCcccccCCc-cccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCC
Q 001235 625 ATVPILAVD-VDGLVNGWNTKIAELTGLSVDKAIGKH-FLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKIND 702 (1117)
Q Consensus 625 a~~gi~~~D-~dG~I~~~N~a~~~l~G~s~eeliG~~-~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG 702 (1117)
+++++|.+| .+|++.++|+++++++||+.++++|.. +.+++||++++.+...+..++.++.....++++. +++|
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~----~~dG 77 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRAL----HRDG 77 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEE----CTTS
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEE----cCCC
Confidence 578999999 688999999999999999999999842 3478999999999999999988877555555554 7899
Q ss_pred ceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhh
Q 001235 703 DPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMD 739 (1117)
Q Consensus 703 ~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~ 739 (1117)
..+|+..++.|++|.+|++.+++++..|||++|.+|+
T Consensus 78 ~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 78 HYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999999875
No 60
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.48 E-value=8.3e-14 Score=139.90 Aligned_cols=136 Identities=11% Similarity=0.038 Sum_probs=107.5
Q ss_pred cchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCC---CCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhh
Q 001235 731 ITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDE---FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCR 807 (1117)
Q Consensus 731 ITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~ 807 (1117)
...++++++++++.+.+++.+++++++ +|+++|. +|+|+++|+++++++||++++++|+++. .+
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~-~l--------- 86 (166)
T 3ue6_A 20 TDNPSKANRILEDPDYSLVKALQMAQQ---NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCR-FL--------- 86 (166)
T ss_dssp -----------CCCCCHHHHHHHHTTS---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GG---------
T ss_pred ehhhhHHHHHHHHHHHHHHHHHhcCCc---eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHh-he---------
Confidence 345677788888899999999999999 8999999 7999999999999999999999999842 22
Q ss_pred ccChhHHHHHHHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHH
Q 001235 808 LKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALH 880 (1117)
Q Consensus 808 l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~e 880 (1117)
.+++........+...+..+..+..++.+.+++|..+|+.++..|+.+.+|.+.|++++++|||++|+++..
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 87 -QGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp -CCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred -eCCCCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 223333344555666677777888899999999999999999999999999999999999999999987754
No 61
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.48 E-value=1e-13 Score=131.97 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=81.8
Q ss_pred hcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc----eeeEEEEEeeccc
Q 001235 624 TATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE----QNIQFEIKTHGSK 699 (1117)
Q Consensus 624 ~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~----~~~e~~~~~~~~~ 699 (1117)
+++++|+++|.+|+|++||++++++|||+.++++|+++..++++.+.......+......+.. ...++. ..+
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVT----GKR 76 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEE----EEC
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEE----EEe
Confidence 368999999999999999999999999999999999999988887776666555555443322 122333 347
Q ss_pred cCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhh
Q 001235 700 INDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTR 743 (1117)
Q Consensus 700 ~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~ 743 (1117)
+||+.+|+.++..|+.+.+ ..+++++++|||++|++|++|++
T Consensus 77 ~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 77 RDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp TTSCEEEEEEEEEEEEETT--EEEEEEEEEECC-----------
T ss_pred CCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHHh
Confidence 8999999999999998743 35688999999999999998864
No 62
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.47 E-value=2.5e-13 Score=131.94 Aligned_cols=122 Identities=11% Similarity=0.053 Sum_probs=95.2
Q ss_pred HHHhCCCCCCCCeeeeCCCC---ceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhc
Q 001235 750 AIVQNPNPLIPPIFGSDEFG---WCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMS 826 (1117)
Q Consensus 750 ~i~~~~~~li~~I~~~D~~g---~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~ 826 (1117)
.+++++++ +|+++|.+| +|+++|+++++++||+++|++|++.. .+. +++........+...+.
T Consensus 3 ~~~~~~~~---~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~-~l~----------~~~~~~~~~~~~~~~~~ 68 (132)
T 2pr5_A 3 HMLDHVRV---GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCR-FLQ----------GKHTDPAEVDNIRTALQ 68 (132)
T ss_dssp ---CCCCC---EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGG-GGC----------CTTCCHHHHHHHHHHHH
T ss_pred hHHhcCCC---cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChh-hhC----------CCCCCHHHHHHHHHHHH
Confidence 56788888 899999976 99999999999999999999999752 221 12222222334455556
Q ss_pred CCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHHHHHH
Q 001235 827 GQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQ 887 (1117)
Q Consensus 827 g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~~ae~ 887 (1117)
.+..+..++++.++||+.+|+.++..|+.+.+ +.+++++++|||++|+.|+++++..++
T Consensus 69 ~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~ 127 (132)
T 2pr5_A 69 NKEPVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTE 127 (132)
T ss_dssp HTCCEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 66678889999999999999999999998776 889999999999999999887765543
No 63
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.47 E-value=8.1e-13 Score=148.35 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=152.2
Q ss_pred HHHhcCccEEEEeCC-CcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHH---------------HcCC
Q 001235 621 LIETATVPILAVDVD-GLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLA---------------LQGQ 684 (1117)
Q Consensus 621 lie~a~~gi~~~D~d-G~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~---------------l~g~ 684 (1117)
++++...-++++..+ |+|+|+|+.+..++||+.++++|+++.+++||+|++.+...+... ....
T Consensus 31 lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~~ 110 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDFT 110 (320)
T ss_dssp TTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCCTTTCCBTTC------------
T ss_pred HHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhcccCCCCcccCcccccccccCC
Confidence 466777777888875 999999999999999999999999999999999999888765320 0011
Q ss_pred cceeeEEEEEeeccccC--CceEEEEEEE--EEeecCCCC--EEEEEEEEEccchh-hhhhhhHhhHHHHHHHHHhCCCC
Q 001235 685 EEQNIQFEIKTHGSKIN--DDPITLIVNA--CASRDLHDN--VVGVCFVAQDITPQ-KTVMDKFTRIEGDYKAIVQNPNP 757 (1117)
Q Consensus 685 ~~~~~e~~~~~~~~~~d--G~~~~v~v~~--~pi~d~~G~--v~gv~~v~~DITer-K~aE~~L~~se~~l~~i~~~~~~ 757 (1117)
....+..+++.. ..++ .++.++.++. ..+.+.+|. ....+..+.-+-.. +..+... + ...
T Consensus 111 ~~rsF~CRmr~~-l~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~i~~-----------~-~~~ 177 (320)
T 4dj2_A 111 QEKSVFCRIRGG-PDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPRIPP-----------D-KRI 177 (320)
T ss_dssp -CCCEEEEECCC--------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSCCCG-----------G-GCE
T ss_pred CceeEEEEEEEe-ccCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCccccccccC-----------C-Cce
Confidence 122333333322 1122 2344444433 234455555 22333333333211 1111000 0 111
Q ss_pred CCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcC-CCCc-eEeE
Q 001235 758 LIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG-QDPE-KVPF 835 (1117)
Q Consensus 758 li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g-~~~~-~~e~ 835 (1117)
-+...+.+|+++++|+++..++||.++|++|+.+ ..+.||+|+..+...+.+.+.+ +... ..++
T Consensus 178 ---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~-----------~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~y 243 (320)
T 4dj2_A 178 ---FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPV-----------LLFLHPEDRPLMLAIHKKILQLAGQPFDHSPI 243 (320)
T ss_dssp ---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBG-----------GGGBCGGGHHHHHHHHHHHTTSSSCCEECCCE
T ss_pred ---EEEEecCCceEEEcCcceeccCCcChHHHcCCcH-----------HHhCCHHHHHHHHHHHHHHHhcCCCcccceEE
Confidence 3677899999999999999999999999999984 3667899999999999998885 4444 4699
Q ss_pred EEEecCCcEEEEEEEEeeeeCC-CCCEEEEEeehhHHH
Q 001235 836 GFFARNGKYAECLLCVNKKLDR-EGAVTGVFCFLQLAS 872 (1117)
Q Consensus 836 ~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DIT 872 (1117)
|++++||.++|++.+...+.|. .+++..++|.-+.++
T Consensus 244 R~~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~ 281 (320)
T 4dj2_A 244 RFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRT 281 (320)
T ss_dssp EEECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESS
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEcc
Confidence 9999999999999999999885 677888888755444
No 64
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.47 E-value=6.7e-14 Score=133.49 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=98.5
Q ss_pred HHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhc-
Q 001235 748 YKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMS- 826 (1117)
Q Consensus 748 l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~- 826 (1117)
+..+++++++ .|+..|.+|+++++|+++++++||+++|++|+++. .+.||++...+...+..++.
T Consensus 4 ~~ll~e~~~d---~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~-----------~~i~p~d~~~~~~~~~~~~~~ 69 (121)
T 3f1p_B 4 KGLNVCQPTR---FISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIV-----------EFCHPEDQQLLRDSFQQVVKL 69 (121)
T ss_dssp ----CCCCCE---EEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGG-----------GGBCTTTHHHHHHHHHHHTTS
T ss_pred ccceecCCCc---eEEEECCCceEEEECcchhhhhCCChHHHcCCCHH-----------HeECHHHHHHHHHHHHHHHhc
Confidence 4567888888 79999999999999999999999999999999743 55678888888888888885
Q ss_pred CCCCceEeEEEEecCCcEEEEEEEEeeeeCC-CCCEEEEEeehhHHHHHHH
Q 001235 827 GQDPEKVPFGFFARNGKYAECLLCVNKKLDR-EGAVTGVFCFLQLASHELQ 876 (1117)
Q Consensus 827 g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITerk~ 876 (1117)
++.....+++++++||+++|+..+..|++|. +|++.+++|+.+|||++|+
T Consensus 70 ~~~~~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 70 KGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred CCCcccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 5567889999999999999999999999997 8999999999999998775
No 65
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.47 E-value=1.5e-13 Score=140.17 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=105.9
Q ss_pred HHHHHHHHHhCCCCCCCCeeeeCCC---CceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHH
Q 001235 744 IEGDYKAIVQNPNPLIPPIFGSDEF---GWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIV 820 (1117)
Q Consensus 744 se~~l~~i~~~~~~li~~I~~~D~~---g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~ 820 (1117)
..++++.+++++++ +|+++|.+ |+|++||+++++++||++++++|+++. .+.++++.......
T Consensus 5 ~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~-----------~~~~~~~~~~~~~~ 70 (176)
T 4hia_A 5 QFEKIRAVFDRSGV---ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCR-----------FLQRGDENAQARAD 70 (176)
T ss_dssp HHHHHHHHHHHCSS---CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG-----------GGCCTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCC---cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcc-----------eeeCCCCCHHHHHH
Confidence 34678899999998 89999999 999999999999999999999999843 22233444445566
Q ss_pred HHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHH
Q 001235 821 LNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALH 880 (1117)
Q Consensus 821 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~e 880 (1117)
+...+..+.++..++.+.+++|+.+|+.+++.|+.+.+|.+.+++++++|||++|+.|.+
T Consensus 71 ~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 71 IRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp HHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred HHHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 677777778888999999999999999999999999999999999999999999998876
No 66
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.45 E-value=1.1e-12 Score=146.84 Aligned_cols=226 Identities=11% Similarity=0.101 Sum_probs=142.9
Q ss_pred HHHhcCccEEEEeCC-CcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHH-H------cC--------C
Q 001235 621 LIETATVPILAVDVD-GLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLA-L------QG--------Q 684 (1117)
Q Consensus 621 lie~a~~gi~~~D~d-G~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~-l------~g--------~ 684 (1117)
+++++...+++++.+ |+|+|+++.+..++||+.+|++|+++.+++||+|+..+...+... + .+ .
T Consensus 20 ll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~~~ 99 (309)
T 3gdi_A 20 IVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQECM 99 (309)
T ss_dssp ---CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHTCTTSSCBCC-------------
T ss_pred HHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhccccCCCCcccccCccccccccC
Confidence 567777778889986 999999999999999999999999999999999999888765310 0 00 0
Q ss_pred cceeeEEEEEeecc-ccCCceEEEEEEEE--EeecCCCC--EEEEEEEEEccchh-hhhhhhHhhHHHHHHHHHhCCCCC
Q 001235 685 EEQNIQFEIKTHGS-KINDDPITLIVNAC--ASRDLHDN--VVGVCFVAQDITPQ-KTVMDKFTRIEGDYKAIVQNPNPL 758 (1117)
Q Consensus 685 ~~~~~e~~~~~~~~-~~dG~~~~v~v~~~--pi~d~~G~--v~gv~~v~~DITer-K~aE~~L~~se~~l~~i~~~~~~l 758 (1117)
....+..+++.... .+..++.++.++.. .+.+++|. ....+.++.-+... +....- .+. ..
T Consensus 100 ~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~~~~p~~~-----------~~~-~~- 166 (309)
T 3gdi_A 100 EEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPRIP-----------PEK-RI- 166 (309)
T ss_dssp -CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCTTSSSCCC-----------GGG-CE-
T ss_pred CceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCCccCCCcC-----------CCC-ce-
Confidence 12333444432211 12233444444433 23344554 22233333333211 100000 000 11
Q ss_pred CCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCC-Cce-EeEE
Q 001235 759 IPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQD-PEK-VPFG 836 (1117)
Q Consensus 759 i~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~-~~~-~e~~ 836 (1117)
-+...+.+|+++++|+++..++||.++|++|+... .+.||+|...+...+.+.+.++. ... .++|
T Consensus 167 --Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-----------~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR 233 (309)
T 3gdi_A 167 --FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVL-----------VQLHPSDRPLMLAIHKKILQAGGQPFDYSPIR 233 (309)
T ss_dssp --EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHH-----------HHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred --EEEEecCCCeEEEECcccccccCcCHHHHcCCCHH-----------HhCCHHHHHHHHHHHHHHHhcCCceeeceEEE
Confidence 36778899999999999999999999999999853 56688898888888888887544 444 6999
Q ss_pred EEecCCcEEEEEEEEeeeeCC-CCCEEEEEeehhHHH
Q 001235 837 FFARNGKYAECLLCVNKKLDR-EGAVTGVFCFLQLAS 872 (1117)
Q Consensus 837 ~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DIT 872 (1117)
++++||.++|++.+...+.|. .+++..++|.-+.++
T Consensus 234 ~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 234 FRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp EECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEcc
Confidence 999999999999999999885 677878888765443
No 67
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.45 E-value=7.8e-13 Score=123.01 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEE
Q 001235 615 TSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIK 694 (1117)
Q Consensus 615 ~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~ 694 (1117)
+++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++.+++ |++.+.+...+..++.++.....+..+
T Consensus 2 e~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF- 79 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE-
T ss_pred hHHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEE-
Confidence 357889999999999999999999999999999999999999999999988 666677777888888766543322232
Q ss_pred eeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 695 THGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 695 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
.+++|..+|+.++..|+++.+|.+.|++++++|||
T Consensus 80 ---~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 80 ---VRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp ---EC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ---EcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 36789999999999999999999999999999998
No 68
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.44 E-value=1.5e-13 Score=129.96 Aligned_cols=124 Identities=13% Similarity=0.070 Sum_probs=95.9
Q ss_pred HhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHH
Q 001235 741 FTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIV 820 (1117)
Q Consensus 741 L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~ 820 (1117)
|++++++|+.++++++. ++|.+|.+|+++++|+++++++|++++++.|.. ..+....+|++...+...
T Consensus 2 l~~~~~~l~~~~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~---------~~~~~~~~~~d~~~~~~~ 69 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGI---GSWVLHMESGRLEWSQAVHDIFGTDSATFDATE---------DAYFQRVHPDDRARVRRE 69 (125)
T ss_dssp ---------------CC---EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBH---------HHHHHHBCTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCe---eEEEEEcCCCcEEECHHHHHHhCCCcccccccH---------HHHHhhcChhHHHHHHHH
Confidence 56788899999999998 899999999999999999999999999988832 113355678888888888
Q ss_pred HHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHH
Q 001235 821 LNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQ 876 (1117)
Q Consensus 821 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~ 876 (1117)
+..++.++.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||++|+
T Consensus 70 ~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 70 LDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp HHHHHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred HHHHHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 99999998889999999999999999999999999999999999999999999874
No 69
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.44 E-value=8.6e-13 Score=123.31 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEE
Q 001235 614 VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEI 693 (1117)
Q Consensus 614 ~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~ 693 (1117)
.+++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++..+.+++........+...+.++.....++.+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRM 84 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEE
Confidence 45678899999999999999999999999999999999999999999997777777777777777777666655444444
Q ss_pred EeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhh
Q 001235 694 KTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTV 737 (1117)
Q Consensus 694 ~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~a 737 (1117)
. .++|..+|+.++..|+.+.+|.+.|++++++|||++|+.
T Consensus 85 ~----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~l 124 (124)
T 3lyx_A 85 L----HKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKKE 124 (124)
T ss_dssp E----CTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC---
T ss_pred E----ccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhcC
Confidence 3 678999999999999999999999999999999999863
No 70
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.43 E-value=3e-13 Score=128.74 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=87.6
Q ss_pred HHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcH-HHHHHHHHHHHcCCcceeeEEEEEe
Q 001235 617 EMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSI-DTVKRMLYLALQGQEEQNIQFEIKT 695 (1117)
Q Consensus 617 ~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~-~~~~~~l~~~l~g~~~~~~e~~~~~ 695 (1117)
.|+.++++++++++ +|.+|+|+++|+++++++||+.++++|+++.++++++.. ..+...+...+.++.....++.
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--- 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI--- 79 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE---
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE---
Confidence 47889999999996 588999999999999999999999999999887765433 3444444444444443333443
Q ss_pred eccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhh
Q 001235 696 HGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTV 737 (1117)
Q Consensus 696 ~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~a 737 (1117)
..++||..+|+.++..|+ +.+|...+++++++|||++|++
T Consensus 80 -~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 -MKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp -EECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred -EEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 347899999999999998 6667777899999999999986
No 71
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.43 E-value=7.9e-13 Score=127.67 Aligned_cols=135 Identities=16% Similarity=0.041 Sum_probs=115.3
Q ss_pred HHHHHHhcCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEE
Q 001235 618 MVRLIETATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIK 694 (1117)
Q Consensus 618 l~~lie~a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~ 694 (1117)
++.++++++++++++|. +|+|+++|+++++++|++.++++|+++..++++.+.......+...+.++.....++...
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINY 83 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEE
Confidence 34578999999999999 999999999999999999999999999999888887777777777776665544444443
Q ss_pred eeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCC
Q 001235 695 THGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNP 757 (1117)
Q Consensus 695 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~ 757 (1117)
+++|..+|+.++..|+++.+|.+.+++++++|||++|+ ++++.+.+.+++.++++++.
T Consensus 84 ----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (146)
T 2v0u_A 84 ----TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENIDE 141 (146)
T ss_dssp ----CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred ----ecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhccHh
Confidence 67899999999999999999999999999999999999 77777888888888776543
No 72
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.43 E-value=1e-12 Score=122.24 Aligned_cols=111 Identities=15% Similarity=0.056 Sum_probs=95.1
Q ss_pred HHHhcCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeec
Q 001235 621 LIETATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHG 697 (1117)
Q Consensus 621 lie~a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~ 697 (1117)
.+++++++++++|. +|+|+++|+++++++|++.++++|+++..++++.........+...+..+.....++..
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLIN---- 77 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE----
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEE----
Confidence 47899999999999 99999999999999999999999999988888887777777777777666554444444
Q ss_pred cccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhh
Q 001235 698 SKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQK 735 (1117)
Q Consensus 698 ~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK 735 (1117)
.+++|..+|+.++..|+++.+|.+.+++++++|||+++
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 78 YTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred ecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 36799999999999999999999999999999999974
No 73
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.43 E-value=1.3e-12 Score=122.88 Aligned_cols=124 Identities=10% Similarity=0.084 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCccEEEEe---CCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceee
Q 001235 613 AVTSEMVRLIETATVPILAVD---VDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNI 689 (1117)
Q Consensus 613 ~~~~~l~~lie~a~~gi~~~D---~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~ 689 (1117)
+.+++++.++++++++++++| .+|+|+++|+++++++|++.++++|+++.+++++.+.......+...+..+.....
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCccee
Confidence 345668899999999999999 99999999999999999999999999999988887766666666666655554443
Q ss_pred EEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhh
Q 001235 690 QFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDK 740 (1117)
Q Consensus 690 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~ 740 (1117)
++.. .+++|..+|+.++..|+.+.+|.+.|++++++|||++|++|++
T Consensus 83 ~~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 83 RLLN----YKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEE----EcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 4333 3678999999999999999999999999999999999998764
No 74
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.43 E-value=4.8e-13 Score=129.49 Aligned_cols=125 Identities=15% Similarity=0.083 Sum_probs=97.8
Q ss_pred chhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccCh
Q 001235 732 TPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQ 811 (1117)
Q Consensus 732 TerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~ 811 (1117)
|+++++|++|++++.+|+.+++++++ +|+++|.+|+|++||+++++++||+++|++|+++.. ++ ++
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d---~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~-l~----------~~ 67 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRI-LM----------PE 67 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG-GS----------CT
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcC---eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHH-HC----------Cc
Confidence 78999999999999999999999999 899999999999999999999999999999998532 22 22
Q ss_pred hHHHHHHHHHHHHhcCCC----CceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 812 EAFVNLGIVLNKAMSGQD----PEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 812 d~~~~~~~~l~~~l~g~~----~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
+........+......+. ....++...++||+.+|+.+++.|+.+. ...+++++++|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 68 PYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp THHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred hhHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 222222223333332222 1345778899999999999999999764 3345889999997
No 75
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.41 E-value=1.3e-12 Score=124.29 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceee
Q 001235 610 ELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNI 689 (1117)
Q Consensus 610 eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~ 689 (1117)
+|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++..+.++.+.......+.....++ ....
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 83 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGE-PLRE 83 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTC-CEEE
T ss_pred HHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCC-cEEE
Confidence 467778899999999999999999999999999999999999999999999877655444333334444444433 2223
Q ss_pred EEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 690 QFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 690 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
++ ...++||+.+|+.++..|+. +|+ ++++++|||
T Consensus 84 e~----~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ER----TVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EE----EEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EE----EEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 33 33488999999999999986 455 567889998
No 76
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.41 E-value=8.5e-13 Score=123.96 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCcc--ccccccCcHHHHHHHHHHHHcCCcceeeEE
Q 001235 614 VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHF--LTLVEDSSIDTVKRMLYLALQGQEEQNIQF 691 (1117)
Q Consensus 614 ~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~--~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~ 691 (1117)
++++|+.+++++++++|.+|.+|.+.++|+++++++||+.+++.|+.. .+++||++.+.+...+..++.++.....++
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~ 81 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVY 81 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 457899999999999999999999999999999999999999988754 688999999999999999887776555555
Q ss_pred EEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 692 EIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 692 ~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
++. +++|+.+|+..++.|+++.+|.+.+++++++|||
T Consensus 82 r~~----~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 82 RIV----TPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEE----CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEE----CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 444 7799999999999999999999999999999998
No 77
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.40 E-value=2e-12 Score=121.35 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=86.1
Q ss_pred cCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccC
Q 001235 625 ATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKIN 701 (1117)
Q Consensus 625 a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~d 701 (1117)
++++|+++|. +|+|+++|+++++++||+.+|++|++...+.++.........+..++..+.....++.. .++|
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~kd 77 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLN----YRKD 77 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE----ECTT
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEE----EcCC
Confidence 5789999994 79999999999999999999999999877776665544444555555555443334433 4889
Q ss_pred CceEEEEEEEEEeecCCCCEEEEEEEEEccch
Q 001235 702 DDPITLIVNACASRDLHDNVVGVCFVAQDITP 733 (1117)
Q Consensus 702 G~~~~v~v~~~pi~d~~G~v~gv~~v~~DITe 733 (1117)
|+.+|+.++..|++|.+|++.+++++.+|||+
T Consensus 78 G~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 78 GTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 99999999999999999999999999999996
No 78
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.38 E-value=1.3e-12 Score=122.77 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCccEEEEeCC-CcEEeecHHHHHHcCCCcccccCCc--cccccccCcHHHHHHHHHHHHcC
Q 001235 607 GMKELEAVTSEMVRLIETATVPILAVDVD-GLVNGWNTKIAELTGLSVDKAIGKH--FLTLVEDSSIDTVKRMLYLALQG 683 (1117)
Q Consensus 607 ~~~eL~~~~~~l~~lie~a~~gi~~~D~d-G~I~~~N~a~~~l~G~s~eeliG~~--~~dlv~~~~~~~~~~~l~~~l~g 683 (1117)
++++|++.+++++.+++++++++|++|.+ |+++++|+++++++|++.++++|++ +.++++|++...+...+.....+
T Consensus 2 ~e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDG 81 (125)
T ss_dssp --------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 34567778889999999999999999999 9999999999999999999999988 67888999998888888775554
Q ss_pred CcceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 684 QEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 684 ~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
.. ...++++ .+++|..+|+.++..|+.+.+|.+.+++++++|||
T Consensus 82 ~~-~~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 82 ES-ADVECRV----NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp CC-EEEEEEE----CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CC-ccEEEEE----EcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 43 3333333 46789999999999999999999999999999998
No 79
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.37 E-value=3.7e-13 Score=127.36 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=95.7
Q ss_pred CeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCCceEeEEEEec
Q 001235 761 PIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFAR 840 (1117)
Q Consensus 761 ~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~ 840 (1117)
.|+..|.+|+++++|+++++++||+++|++|+.+ ..+.||++...+...+..++.++..+..++++.++
T Consensus 11 ~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~-----------~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~ 79 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDRITELIGYHPEELLGRSA-----------YEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAK 79 (117)
T ss_dssp EEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBG-----------GGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECT
T ss_pred EEEEECCCceEEEECcChhhhhCCCHHHHcCCch-----------hheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEec
Confidence 6889999999999999999999999999999874 35667888888888888888888778889999999
Q ss_pred CCcEEEEEEEEeeeeCC-CCCEEEEEeehhHHHHHHH
Q 001235 841 NGKYAECLLCVNKKLDR-EGAVTGVFCFLQLASHELQ 876 (1117)
Q Consensus 841 dG~~~~v~~~~~pi~d~-~G~v~g~v~i~~DITerk~ 876 (1117)
||+++|+..+..|+.|. +|.+.+++|+.+|||++++
T Consensus 80 dG~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 80 HGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp TSSEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred CCCEEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 99999999999999998 8999999999999998764
No 80
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.37 E-value=1.1e-12 Score=123.86 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=97.4
Q ss_pred CeeeeC-CCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCCceEeEEEEe
Q 001235 761 PIFGSD-EFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFA 839 (1117)
Q Consensus 761 ~I~~~D-~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~ 839 (1117)
++|.+| .+|+++++|+++++++||+++++.+.. .+..+.||++...+...+..++.++..+..++++.+
T Consensus 5 giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~----------~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~ 74 (115)
T 3h9w_A 5 IPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVE----------DWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALH 74 (115)
T ss_dssp EEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHH----------HHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEEcCCCcEEEEChhHHHHhCCChHHccCHH----------HHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEc
Confidence 789999 788899999999999999999988732 244677899999999999999999888999999999
Q ss_pred cCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHH
Q 001235 840 RNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQAL 879 (1117)
Q Consensus 840 ~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~ 879 (1117)
+||+++|+..++.|++|.+|++++++|+..|||++|++|.
T Consensus 75 ~dG~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 75 RDGHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp TTSCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999999998774
No 81
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.36 E-value=1.9e-12 Score=123.80 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=94.9
Q ss_pred HHhCCCCCCCCeeeeCC---CCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcC
Q 001235 751 IVQNPNPLIPPIFGSDE---FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG 827 (1117)
Q Consensus 751 i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g 827 (1117)
+++++++ +|+++|. +|+++++|+++++++||++++++|+.+. .+ .+++....+...+...+..
T Consensus 2 ~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~-~~----------~~~~~~~~~~~~~~~~~~~ 67 (128)
T 3t50_A 2 ASEFTLM---PMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR-FL----------QGHGTDPAHVRAIKSAIAA 67 (128)
T ss_dssp CCCCCSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GG----------CCTTSCHHHHHHHHHHHHT
T ss_pred ccccCcc---cEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh-hh----------cCCccCHHHHHHHHHHHHc
Confidence 3566666 8999999 9999999999999999999999999853 22 2233334455566677777
Q ss_pred CCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHH
Q 001235 828 QDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQR 883 (1117)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~ 883 (1117)
+..+..++.+.+++|..+|+.+++.|+.+.+|.+.|++++++|||++|+++++.++
T Consensus 68 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~ 123 (128)
T 3t50_A 68 EKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEH 123 (128)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-------
T ss_pred CCCceeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhh
Confidence 78888899999999999999999999999999999999999999999998866443
No 82
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.36 E-value=1.6e-12 Score=124.34 Aligned_cols=124 Identities=15% Similarity=0.109 Sum_probs=94.1
Q ss_pred ccchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHh--hcchhhhhcCCchhhhh
Q 001235 730 DITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVI--DKLLLAEVFGTNMACCR 807 (1117)
Q Consensus 730 DITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEli--Gk~l~~ei~~~~~~~~~ 807 (1117)
|+|++|++|++|++++++|+.+++++++ +|++.|.+|+|++||+++++++||+++|++ |+.... ++
T Consensus 1 ~~t~r~~~e~~L~~~~~~~~~l~e~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~-~~-------- 68 (126)
T 3bwl_A 1 SNAERKRREKRLEETSSRLEALFENSPD---MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFD-LM-------- 68 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTB-TT--------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhCCc---EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhh-cc--------
Confidence 6899999999999999999999999999 899999999999999999999999999994 565322 11
Q ss_pred ccChhHHHHHHHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 808 LKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 808 l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
+ +...+...+..... +....++..+.++||+.+|+.++..+.. .+|.. +++++++|||
T Consensus 69 --~--~~~~~~~~~~~~~~-~~~~~~e~~~~~~dG~~~~~~~~~~~~~-~~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 69 --F--DAEDVQTQLSGFSV-DERRKFEGLYERRDGSTMSVEVHLLRFN-LEGED-RFLAISRDIT 126 (126)
T ss_dssp --C--CHHHHHHHHHTCCT-TCEEEEEEEEECTTSCEEEEEEEEEEEE-ETTEE-EEEEEEEEC-
T ss_pred --C--CHHHHHHHHHHHhc-CCCcceEEEEEeCCCCEEEEEEEeEEEe-cCCcE-EEEEEEEeCC
Confidence 1 11222222222222 2334567788899999999999888874 34444 4788999997
No 83
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.36 E-value=8.4e-12 Score=119.31 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccc--cCCccccccccCcHHHHHHHHHHH
Q 001235 603 LKIEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKA--IGKHFLTLVEDSSIDTVKRMLYLA 680 (1117)
Q Consensus 603 ~~~~~~~eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eel--iG~~~~dlv~~~~~~~~~~~l~~~ 680 (1117)
+.++++++|++++++|+.++++++++|+++|.+|+|++||+++++++||+.+++ +|+++.++++ +...+...+...
T Consensus 4 ~r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~ 81 (126)
T 3bwl_A 4 ERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGF 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHH
Confidence 445677889999999999999999999999999999999999999999999999 5677878776 333333332222
Q ss_pred HcCCcceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 681 LQGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 681 l~g~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
..+ .....+ ....++||+.+|+.++..++.+ +|.. +++++++|||
T Consensus 82 ~~~-~~~~~e----~~~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 82 SVD-ERRKFE----GLYERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp CTT-CEEEEE----EEEECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred hcC-CCcceE----EEEEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 222 222222 2234889999999988888744 4444 5678899998
No 84
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.36 E-value=1.9e-12 Score=129.52 Aligned_cols=137 Identities=10% Similarity=0.059 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCC
Q 001235 605 IEGMKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQ 684 (1117)
Q Consensus 605 ~~~~~eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~ 684 (1117)
.+..+++++.+++++.+++.++++++++|.+|+|+++|+++++++|++.++++|+++.+++++.+.......+.....++
T Consensus 29 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (167)
T 1v9y_A 29 MKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGG 108 (167)
T ss_dssp -----------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC--
T ss_pred HHHHHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcC
Confidence 34556677778889999999999999999999999999999999999999999999999998887777777777777665
Q ss_pred cceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhh
Q 001235 685 EEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTR 743 (1117)
Q Consensus 685 ~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~ 743 (1117)
......+.......+++|..+|+.++..|+ +.+|.+ +++++++|||++|+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 109 KARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp --------CEEEEECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-------------
T ss_pred CCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 432111222222346789999999999999 556666 489999999999999988764
No 85
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.35 E-value=2.1e-12 Score=121.22 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=106.6
Q ss_pred HHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHH
Q 001235 744 IEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNK 823 (1117)
Q Consensus 744 se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (1117)
++++|+.++++++. ++|.+|.+|.++++|+++++++||+++++.++.. .+..+.+|++...+...+..
T Consensus 2 s~~~~~~l~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~---------~~~~~i~p~d~~~~~~~~~~ 69 (118)
T 3icy_A 2 NAEELQALVDNIPA---AIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRL---------NTLSMIHHDDRHMLSNAYSK 69 (118)
T ss_dssp HHHHHHHHHTTCCC---CCEEECTTSCEEECCCCCGGGGGGEEEETTEEEE---------GGGGGBCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCc---eEEEEEcCCCceEEechhHhhcCCCHHHccCChh---------HHHHHcCHHHHHHHHHHHHH
Confidence 57789999999998 8999999999999999999999999999887752 13456789999999999999
Q ss_pred HhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 824 AMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 824 ~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
.+.++.....++++.+++|+.+|+..+..|+++.+|.+.+++|+++|||
T Consensus 70 ~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 70 LREAKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp HHHSCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHhcCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 9888888899999999999999999999999999999999999999997
No 86
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.33 E-value=6.6e-12 Score=119.09 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=95.8
Q ss_pred HHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCc-ceeeEEEEEeecc
Q 001235 620 RLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQE-EQNIQFEIKTHGS 698 (1117)
Q Consensus 620 ~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~-~~~~e~~~~~~~~ 698 (1117)
.++++++++++.+|.+|+|+++|+++++++||+.++++|+++.++++|++.+.+...+..++.++. ....++++ +
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~----~ 82 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKF----R 82 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEE----E
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEE----E
Confidence 357789999999999999999999999999999999999999999999999988888888776533 33334443 4
Q ss_pred ccCCceEEEEEEEEEeecCC-CCEEEEEEEEEccchhh
Q 001235 699 KINDDPITLIVNACASRDLH-DNVVGVCFVAQDITPQK 735 (1117)
Q Consensus 699 ~~dG~~~~v~v~~~pi~d~~-G~v~gv~~v~~DITerK 735 (1117)
++||+.+|+.++..|++|.+ +.+.+++++.+|||+.+
T Consensus 83 ~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 83 AKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp CSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 78999999999999999876 56777899999999865
No 87
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.33 E-value=2.4e-12 Score=122.13 Aligned_cols=120 Identities=15% Similarity=0.206 Sum_probs=91.8
Q ss_pred HHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeecc
Q 001235 619 VRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGS 698 (1117)
Q Consensus 619 ~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~ 698 (1117)
+.++++++++++++|.+|+|+++|+++++++|++.++++|+++.+++++++...+...+..+..++.. ..++.+.
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 76 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLE---- 76 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEE----
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEE----
Confidence 45789999999999999999999999999999999999999999999999998888888888877655 3344333
Q ss_pred ccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHH
Q 001235 699 KINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIE 745 (1117)
Q Consensus 699 ~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se 745 (1117)
+++|..+|+.++..|..+ +...+++++++|||++|++++++..+.
T Consensus 77 ~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 77 KKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp CTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-------------
T ss_pred ccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhh
Confidence 678999999999987665 336788999999999999998876553
No 88
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.33 E-value=3.5e-12 Score=127.39 Aligned_cols=128 Identities=9% Similarity=0.068 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHhCCCCCCCCeeeeC-CCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHH
Q 001235 742 TRIEGDYKAIVQNPNPLIPPIFGSD-EFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIV 820 (1117)
Q Consensus 742 ~~se~~l~~i~~~~~~li~~I~~~D-~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~ 820 (1117)
...+++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+++... + ++.....+...
T Consensus 13 ~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~-~----------~~~~~~~~~~~ 76 (158)
T 3k3c_A 13 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREV-Y----------PELEGQQIYEM 76 (158)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHH-S----------GGGGGTTHHHH
T ss_pred HHHHHHHHHHHhcCCc---eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHh-C----------CchhHHHHHHH
Confidence 4456789999999998 899999 9999999999999999999 8999986432 2 22233334556
Q ss_pred HHHHhcCCCCc-eEeEEE--EecC--CcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHHHH
Q 001235 821 LNKAMSGQDPE-KVPFGF--FARN--GKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLS 885 (1117)
Q Consensus 821 l~~~l~g~~~~-~~e~~~--~~~d--G~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~~a 885 (1117)
+.+++..+.+. ..+..+ ...+ |..+|+.++..|+++.+|.+.|++++++|||++|+++.++++.+
T Consensus 77 ~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~ 146 (158)
T 3k3c_A 77 LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARV 146 (158)
T ss_dssp HHHHHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHH
Confidence 66777544443 333333 3222 77899999999999999999999999999999999997766543
No 89
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.33 E-value=4.7e-12 Score=118.82 Aligned_cols=124 Identities=9% Similarity=-0.024 Sum_probs=101.0
Q ss_pred hhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCC-CceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHH
Q 001235 736 TVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEF-GWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAF 814 (1117)
Q Consensus 736 ~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~-g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~ 814 (1117)
+++++|++++++|+.++++++. ++|.+|.+ |+++++|+++++++|+++++++|+.. .+....++++.
T Consensus 1 ~~e~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~ 68 (125)
T 3eeh_A 1 RAKQQAAKSERRVRELTEATND---ILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPH---------DFLNGIHPEDR 68 (125)
T ss_dssp ---------CHHHHHHHSCCCC---EEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGG---------GGGGGBCHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCc---eEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcH---------HHHHhcCHHHH
Confidence 3577888999999999999999 89999999 99999999999999999999998762 13345678888
Q ss_pred HHHHHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 815 VNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 815 ~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
..+...+... ..+.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||
T Consensus 69 ~~~~~~~~~~-~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 69 ELMKDTMQSL-MDGESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHHHHHHHHH-HTTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHHH-HcCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 8777777774 44556788999999999999999999999999999999999999997
No 90
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.33 E-value=7.2e-12 Score=142.33 Aligned_cols=120 Identities=16% Similarity=0.057 Sum_probs=104.4
Q ss_pred HHHHhcCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEee
Q 001235 620 RLIETATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTH 696 (1117)
Q Consensus 620 ~lie~a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~ 696 (1117)
.++++++++++++|. +|+|++||+++++++||+.++++|+++.++.++++.......+...+.++.....++..
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--- 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN--- 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE---
Confidence 467899999999999 99999999999999999999999999999988877777666777777666654444443
Q ss_pred ccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhh
Q 001235 697 GSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTR 743 (1117)
Q Consensus 697 ~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~ 743 (1117)
.++||+.+|+.++..|++|.+|++.|++++++|||++|+.+++++.
T Consensus 92 -~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~~ 137 (332)
T 2wkq_A 92 -YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREG 137 (332)
T ss_dssp -ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHH
T ss_pred -EcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhccc
Confidence 4789999999999999999999999999999999999999877643
No 91
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.32 E-value=3.4e-12 Score=127.61 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=107.9
Q ss_pred HHHHHHHHHhCCCCCCCCeeeeCCCC---ceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHH
Q 001235 744 IEGDYKAIVQNPNPLIPPIFGSDEFG---WCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIV 820 (1117)
Q Consensus 744 se~~l~~i~~~~~~li~~I~~~D~~g---~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~ 820 (1117)
+++.++.++++++. +|+++|.+| +|+++|+++++++|++.++++|+.+. .++ +++....+...
T Consensus 23 ~~~~~~~i~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~----------~~~~~~~~~~~ 88 (162)
T 3sw1_A 23 NAQLLQSMVDASND---GIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCR-FLQ----------GDDRDQLGRAR 88 (162)
T ss_dssp CHHHHHHHHHTCSS---EEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGG-GGT----------TTCCCCHHHHH
T ss_pred hHHHHHHHHhhccC---cEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcc-eec----------CCCcCHHHHHH
Confidence 45688999999998 899999999 99999999999999999999999853 222 12222333444
Q ss_pred HHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHHHHHH
Q 001235 821 LNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQ 887 (1117)
Q Consensus 821 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~~ae~ 887 (1117)
+...+..+.....++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++++.+.++++..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~ 155 (162)
T 3sw1_A 89 IRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRAR 155 (162)
T ss_dssp HHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC-
T ss_pred HHHHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 5566666777888999999999999999999999999999999999999999999999887765543
No 92
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.30 E-value=5.4e-12 Score=118.44 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=84.0
Q ss_pred CeeeeC---CCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCCceEeEEE
Q 001235 761 PIFGSD---EFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGF 837 (1117)
Q Consensus 761 ~I~~~D---~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~ 837 (1117)
+|++.| .+|+|+++|++|++++||+++|++|++.. .+ .+++........+.+++..+..+..++..
T Consensus 5 ~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-~l----------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 73 (109)
T 1n9l_A 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FL----------QGEGTDPKEVQKIRDAIKKGEACSVRLLN 73 (109)
T ss_dssp EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GG----------CCTTCCHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-hc----------CCCCCCHHHHHHHHHHHHcCCcEEEEEEE
Confidence 789999 47999999999999999999999999742 22 12222222334556666667788999999
Q ss_pred EecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHH
Q 001235 838 FARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASH 873 (1117)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITe 873 (1117)
+++||+.+|+.+++.|++|.+|++.+++++.+|||+
T Consensus 74 ~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 74 YRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999999999984
No 93
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.29 E-value=6.8e-12 Score=119.27 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=86.6
Q ss_pred hhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHH
Q 001235 739 DKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLG 818 (1117)
Q Consensus 739 ~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~ 818 (1117)
++|++++++|+.+++++++ +|++.|.+|+++++|+++++++||+++|++|+++. .+.+. ..... ..
T Consensus 4 ~~l~~se~~~~~l~e~~~d---~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~~~-------~~~~~---~~ 69 (117)
T 2r78_A 4 ENLYFQSNAYRALFEHAID---GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLSRG-------VDSGW---AA 69 (117)
T ss_dssp CSHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTTTC-------STTSH---HH
T ss_pred hHHHHhHHHHHHHHhcCCc---eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhCCc-------cchhH---HH
Confidence 5678899999999999999 89999999999999999999999999999999742 22111 00111 11
Q ss_pred HHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 819 IVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 819 ~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
..+ ..+..+..+..++++.++||+.+|+.++..|+. +|. ++++++|||
T Consensus 70 ~~~-~~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 70 ASL-ARIVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp HHH-HHHHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred HHH-HHHHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 122 233445567789999999999999999999986 566 568889997
No 94
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.29 E-value=8.9e-12 Score=116.31 Aligned_cols=120 Identities=12% Similarity=0.092 Sum_probs=101.9
Q ss_pred hHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHH
Q 001235 743 RIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLN 822 (1117)
Q Consensus 743 ~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~ 822 (1117)
+++++++.++++++. +++++|.+|+++++|+++++++|++.++++|+.+. .+ .+++....+...+.
T Consensus 4 ~~~~~~~~~~~~~~~---~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~----------~~~~~~~~~~~~~~ 69 (124)
T 3lyx_A 4 DILKQRAKAFDYVFD---AIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-ML----------HVPGDTEHITSEVI 69 (124)
T ss_dssp CHHHHHHHGGGTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-GG----------SCTTTHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCc---eEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-Hh----------cCcchhhHHHHHHH
Confidence 456789999999998 89999999999999999999999999999999864 22 22334444555666
Q ss_pred HHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHH
Q 001235 823 KAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQ 876 (1117)
Q Consensus 823 ~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~ 876 (1117)
..+.++.....++.+..++|..+|+.++..|+.+.+|.+.|++++++|||++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 70 SAVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp HHHHHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred HHHHcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 777777788889999999999999999999999999999999999999998765
No 95
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.27 E-value=2.4e-12 Score=155.10 Aligned_cols=106 Identities=14% Similarity=0.273 Sum_probs=87.4
Q ss_pred eEEecHHHHHHHHHHHHHHHhhccCCCC---eEEEEEEecc-cccccccceeEEEEEEeecCCCCChhhhhhccCCCC--
Q 001235 1000 TLYGDSIRLQQVLADFLSISINFVPNGG---QLMVSSSLTK-DQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG-- 1073 (1117)
Q Consensus 1000 ~v~~D~~~L~qVL~nLl~NAik~~~~~g---~I~I~v~~~~-~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~-- 1073 (1117)
.+.+|+..|.|++.||+.||++|+..+| .|.|.+.... + .+.|+|.|||+|||++.++++|++|+
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~---------~~~I~V~DnG~GIp~e~l~~iF~~~~at 100 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPD---------YVTVIIEDNGPGIVREQIPKVFAKLLYG 100 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTT---------EEEEEEECCSCCCCGGGHHHHHSCCCCC
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCc---------EEEEEEEECCCCCCHHHHHHHhhhhccC
Confidence 3668999999999999999999998656 8888877655 3 78999999999999999999997752
Q ss_pred ----C----CCCccccHHHHHHHHHHcCCE-EEEEeeCCe----EEEEEEEecc
Q 001235 1074 ----D----TSEEGISLLISRKLVKLMNGD-VQYLREAGK----STFIVSVELA 1114 (1117)
Q Consensus 1074 ----~----~~GtGLGL~ivr~iVe~~gG~-I~v~s~~g~----ttF~i~LPl~ 1114 (1117)
. .+|.|+||++|+.+++.|||+ |.+++.+++ ++|+|.+|..
T Consensus 101 skf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 101 SRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTS 154 (621)
T ss_dssp --CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSS
T ss_pred CccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchh
Confidence 2 247899999999999999999 899887653 4555544543
No 96
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.27 E-value=2.7e-12 Score=122.01 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=90.1
Q ss_pred HHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhc
Q 001235 747 DYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMS 826 (1117)
Q Consensus 747 ~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~ 826 (1117)
+|+.++++++. +|+ +|.+|+|+++|+++++++||++++++|+++. .+++. .+....+...+...+.
T Consensus 4 ~~~~~~~~~~~---~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~~---------~~~~~~~~~~~~~~~~ 69 (120)
T 3mqq_A 4 DYKTAFHLAPI---GLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYPS---------SDEFERIGERISPVMI 69 (120)
T ss_dssp CHHHHHHHCSS---EEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSSS---------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCc---eEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccCC---------hhhHHHHHHHHHHHHh
Confidence 57899999998 775 4789999999999999999999999999853 33322 2233344455555566
Q ss_pred CCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHH
Q 001235 827 GQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQ 877 (1117)
Q Consensus 827 g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~ 877 (1117)
++..+..++++.++||+.+|+.++..|+ +.+|...+++++++|||++|+.
T Consensus 70 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 70 AHGSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp HHSCEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred cCCcceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 6667888999999999999999999999 6667677889999999998875
No 97
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.26 E-value=1.4e-11 Score=114.46 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHhCCCCCCCCeeeeCC---CCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcC
Q 001235 751 IVQNPNPLIPPIFGSDE---FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG 827 (1117)
Q Consensus 751 i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g 827 (1117)
.++++++ ++++.|. +|+++++|+++++++||++++++|+.+. . +.+++........+...+..
T Consensus 2 ~l~~~~~---~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~----------~~~~~~~~~~~~~~~~~~~~ 67 (115)
T 4eet_B 2 SPEFIEK---NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR-F----------LQGPETDQATVQKIRDAIRD 67 (115)
T ss_dssp ---CCCC---SEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-G----------GCCTTSCHHHHHHHHHHHHT
T ss_pred ccccCCC---cEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH-H----------hcCCCCChHHHHHHHHHHHc
Confidence 3567777 8999999 9999999999999999999999999842 2 22233344455566777777
Q ss_pred CCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHH
Q 001235 828 QDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHE 874 (1117)
Q Consensus 828 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITer 874 (1117)
+.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 68 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer 114 (115)
T 4eet_B 68 QRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDH 114 (115)
T ss_dssp TCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCC
T ss_pred CCCcceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeeccc
Confidence 88888899999999999999999999999999999999999999975
No 98
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.26 E-value=1.6e-11 Score=116.63 Aligned_cols=110 Identities=14% Similarity=0.089 Sum_probs=73.1
Q ss_pred CeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCC----CceEeEE
Q 001235 761 PIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQD----PEKVPFG 836 (1117)
Q Consensus 761 ~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~----~~~~e~~ 836 (1117)
+|+++|.+|+|++||+++++++||+++|++|+++.. ++ +++........+......+. ....++.
T Consensus 5 ~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~-l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (119)
T 2vv6_A 5 AMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNI-LM----------PEPDRSRHDSYISRYRTTSDPHIIGIGRIVT 73 (119)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG-GS----------CTTHHHHHHHHHHHHHHHCCCSSTTTCEEEE
T ss_pred eEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHH-hC----------CchHHHHHHHHHHHHhcCCCcccCCCceEEE
Confidence 899999999999999999999999999999998532 22 22222222223333322222 1356778
Q ss_pred EEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHH
Q 001235 837 FFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQR 883 (1117)
Q Consensus 837 ~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~ 883 (1117)
..++||+.+|+.+++.|+.+.+ ..+++++++|||++|+.|+++++
T Consensus 74 ~~~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 74 GKRRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp EECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC-----------
T ss_pred EEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHHh
Confidence 8999999999999999997643 35689999999999999877653
No 99
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.26 E-value=1.2e-11 Score=114.98 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHH
Q 001235 745 EGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKA 824 (1117)
Q Consensus 745 e~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~ 824 (1117)
+++++.++++++. +++++|.+|+++++|+++++++|+++++++|+.+... + +++...+...+..+
T Consensus 2 e~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~-~-----------~~~~~~~~~~~~~~ 66 (114)
T 3luq_A 2 DERLRLFTEHAPA---ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDI-F-----------PEIGEEWKSVHRRG 66 (114)
T ss_dssp CHHHHHHHHTCSS---EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHH-C-----------TTCCHHHHHHHHHH
T ss_pred hHHHHHHHhcCCc---eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHH-C-----------CccHHHHHHHHHHH
Confidence 4678999999998 8999999999999999999999999999999986432 2 22233445566677
Q ss_pred hcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 825 MSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 825 l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
+.++.....+..+.+++|+.+|+.++..|+++.+|.+.|++++++|||
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 67 LAGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp HTTCCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred hcCCcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 776665555558899999999999999999999999999999999997
No 100
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.25 E-value=2.8e-11 Score=113.44 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeE
Q 001235 611 LEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQ 690 (1117)
Q Consensus 611 L~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e 690 (1117)
+++..+.++.++++++++++++|.+|+|+++|+++++++||+.++++|+++.+++++..... +.....++ .
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~-~---- 78 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKN-N---- 78 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHS-E----
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcC-c----
Confidence 44555667889999999999999999999999999999999999999999998876544433 22233222 2
Q ss_pred EEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 691 FEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 691 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
+..+....+++|..+|+.++..|+.+.++ .+++++++|||
T Consensus 79 ~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 79 YTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred EEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 22333344789999999999999887543 46678999998
No 101
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.25 E-value=1.1e-11 Score=123.96 Aligned_cols=144 Identities=19% Similarity=0.164 Sum_probs=83.9
Q ss_pred EEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchh
Q 001235 725 CFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMA 804 (1117)
Q Consensus 725 ~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~ 804 (1117)
.-+.+|++..++..+++++.+.+++.+++++++ +++++|.+|+++++|+++++++|++.++++|+.+... +
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~-~----- 89 (167)
T 1v9y_A 19 SHMRQDAEVIMKLTDADNAADGIFFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML-I----- 89 (167)
T ss_dssp ---------------------CCHHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGG-S-----
T ss_pred HHHHhhHHHHHHHHHHHhhhhHHHHHHHHhCCC---CEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhc-c-----
Confidence 334578999999999999999999999999998 8999999999999999999999999999999875322 2
Q ss_pred hhhccChhHHHHHHHHHHHHhcCCCC----ceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHH
Q 001235 805 CCRLKNQEAFVNLGIVLNKAMSGQDP----EKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALH 880 (1117)
Q Consensus 805 ~~~l~~~d~~~~~~~~l~~~l~g~~~----~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~e 880 (1117)
+++....+...+.....++.. +..++.+..++|..+|+.++..|+ +.+|.+. ++++++|||++++.+.+
T Consensus 90 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~ 162 (167)
T 1v9y_A 90 -----PRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQ 162 (167)
T ss_dssp -----CGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC----------
T ss_pred -----CccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHH
Confidence 222333333445555555443 566888899999999999999999 5566664 89999999999988876
Q ss_pred HHHH
Q 001235 881 VQRL 884 (1117)
Q Consensus 881 l~~~ 884 (1117)
++++
T Consensus 163 l~~l 166 (167)
T 1v9y_A 163 TRQL 166 (167)
T ss_dssp ----
T ss_pred HHhh
Confidence 6543
No 102
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.23 E-value=1.8e-11 Score=118.08 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=97.9
Q ss_pred HHHHHhCCCCCCCCeeeeCC---CCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHH
Q 001235 748 YKAIVQNPNPLIPPIFGSDE---FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKA 824 (1117)
Q Consensus 748 l~~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~ 824 (1117)
++.++++++. +++++|. +|+++++|+++++++|++.++++|+++.. +.+++....+...+...
T Consensus 4 l~~~~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~-----------~~~~~~~~~~~~~~~~~ 69 (146)
T 2v0u_A 4 LATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRF-----------LQGPETDRATVRKIRDA 69 (146)
T ss_dssp CCCTGGGSSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-----------GCCTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCC---cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHH-----------hcCCcCChHHHHHHHHH
Confidence 3456777887 8999999 99999999999999999999999997532 22333444455566677
Q ss_pred hcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHH
Q 001235 825 MSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQA 878 (1117)
Q Consensus 825 l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e 878 (1117)
+.++.....++.+..++|..+|+.++..|+.+.+|.+.+++++++|||++++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~~ 123 (146)
T 2v0u_A 70 IDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDA 123 (146)
T ss_dssp HHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHH
T ss_pred HhcCCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHHH
Confidence 777778889999999999999999999999999999999999999999988733
No 103
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.23 E-value=1.7e-11 Score=115.21 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhCCCCCCCCeeeeC---CCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHH
Q 001235 743 RIEGDYKAIVQNPNPLIPPIFGSD---EFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGI 819 (1117)
Q Consensus 743 ~se~~l~~i~~~~~~li~~I~~~D---~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~ 819 (1117)
+++..++.++++++. +++++| .+|+++++|+++++++|++.++++|+.+... .+++.......
T Consensus 3 ~~~~~~~~~~~~~~~---~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~-----------~~~~~~~~~~~ 68 (130)
T 2z6d_A 3 RVSQELKTALSTLQQ---TFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFL-----------QGPDTDKNEVA 68 (130)
T ss_dssp ----CHHHHHHHTTC---EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGG-----------CCTTSCHHHHH
T ss_pred hHHHHHHHHHHhccc---ceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhc-----------cCCCCCchHHH
Confidence 456678899999998 899999 9999999999999999999999999985322 22233333444
Q ss_pred HHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHH
Q 001235 820 VLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQAL 879 (1117)
Q Consensus 820 ~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~ 879 (1117)
.+...+..+.....++.+.+++|..+|+.++..|+.+.+|.+.|++++++|||++++.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 69 KIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp HHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred HHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhc
Confidence 555666677777888889999999999999999999999999999999999999887764
No 104
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.23 E-value=6.8e-11 Score=127.54 Aligned_cols=152 Identities=9% Similarity=0.114 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHc------------CCCcccccCCccccccccCcHHHHHHHHHHHH
Q 001235 614 VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELT------------GLSVDKAIGKHFLTLVEDSSIDTVKRMLYLAL 681 (1117)
Q Consensus 614 ~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~------------G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l 681 (1117)
..++++.++++++++|+++|.+|+|+++|+++++++ ||+.++++|+++.++++.. ......+ ..+
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~~--~~~~~~~-~~~ 96 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQRHLL-ANL 96 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSSH--HHHHHHH-HTC
T ss_pred HHHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCCH--HHHHHHH-Hhc
Confidence 346678899999999999999999999999999998 8999999999998887532 1112222 222
Q ss_pred cCCcceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCC
Q 001235 682 QGQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPP 761 (1117)
Q Consensus 682 ~g~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~ 761 (1117)
.+ . ....+. .+| +|+.++..|++|.+|++.|++++++|||++|++|++++...+.. .. +
T Consensus 97 ~~--~--~~~~~~-----~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~---~~-------g 155 (233)
T 3vol_A 97 TG--V--HKAELN-----LGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAA---AA-------G 155 (233)
T ss_dssp CS--C--EEEEEE-----ETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHH---HC-------C
T ss_pred cc--c--eeEEEE-----ECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHH---hC-------C
Confidence 21 1 222222 123 47899999999999999999999999999999998876544322 21 1
Q ss_pred eeeeCCCCcee-echhhHHHhcCCChhhHhhcc
Q 001235 762 IFGSDEFGWCC-EWNPAMVKLTGWKREEVIDKL 793 (1117)
Q Consensus 762 I~~~D~~g~i~-~~N~a~~~l~G~~~eEliGk~ 793 (1117)
|..+++. ..|..+.+-+++.-.+++++.
T Consensus 156 ----dl~~ri~~~~~~~~~~~l~~~ln~l~~~~ 184 (233)
T 3vol_A 156 ----DFSKRVEEAGKEGFFLRLAKDLNSLVDTA 184 (233)
T ss_dssp ---------------------------------
T ss_pred ----cccccccccccchHHHHHHHHHHHHHHHH
Confidence 4466665 567777777777777766653
No 105
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.19 E-value=1.6e-11 Score=116.53 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEE
Q 001235 614 VTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEI 693 (1117)
Q Consensus 614 ~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~ 693 (1117)
.+++|+.++++++++++++|.+|+|+++|+++++++|++.++++|+++.++++++...............+... .
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 91 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT----R- 91 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----E-
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----E-
Confidence 77889999999999999999999999999999999999999999999999985555555555555666555432 1
Q ss_pred EeeccccCCc-eEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 694 KTHGSKINDD-PITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 694 ~~~~~~~dG~-~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
..+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 92 -----~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 92 -----SEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp -----EEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred -----eEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 22355 78999999998775 66689999999998
No 106
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.19 E-value=1.3e-10 Score=116.25 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCccEEEEeCCCcEEeecHH---HHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEE
Q 001235 616 SEMVRLIETATVPILAVDVDGLVNGWNTK---IAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFE 692 (1117)
Q Consensus 616 ~~l~~lie~a~~gi~~~D~dG~I~~~N~a---~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~ 692 (1117)
+++..++++++++|+++|.+|+|++||++ ++++|| ..++++|+++.++.++...+.+...+. .++.++....++.
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~~~~~v~~i~~-~l~~g~~~~~~~~ 96 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPKVLDKVKKVFE-LLRNGQRDKVNMW 96 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHHHHHHHHHHHH-HHHTTSBSEEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHHHHHHHHHHHH-HHHcCCccEEEEE
Confidence 45788999999999999999999999999 999999 567899999998876555444444444 4443444333433
Q ss_pred EEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHH
Q 001235 693 IKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIE 745 (1117)
Q Consensus 693 ~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se 745 (1117)
... .+..+++.++..|++|++|++.|++.+++|||+.++.+++.++-+
T Consensus 97 ~~~-----~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~~~ 144 (151)
T 2qkp_A 97 FQS-----ERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144 (151)
T ss_dssp EEE-----TTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-----
T ss_pred Eec-----CCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhhccc
Confidence 321 222467899999999999999999999999999999998866554
No 107
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.19 E-value=1.4e-11 Score=123.55 Aligned_cols=124 Identities=12% Similarity=0.029 Sum_probs=93.2
Q ss_pred hhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHH
Q 001235 739 DKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLG 818 (1117)
Q Consensus 739 ~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~ 818 (1117)
.++++++..++.+++++++ ||+++|.+|+|++||+++++++|+++++++|+++. ++++. ....+.
T Consensus 15 ~~~~~~~~~l~~il~~~~~---gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~-~~~p~-----------~~~~~~ 79 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSF---ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFPE-----------SADYLK 79 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCC---EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHH-HHSGG-----------GHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHH-HhcCC-----------hHHHHH
Confidence 3567777888999999998 99999999999999999999999999999999864 33321 333456
Q ss_pred HHHHHHhcCCCCce---------EeEEE---EecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHH
Q 001235 819 IVLNKAMSGQDPEK---------VPFGF---FARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQ 877 (1117)
Q Consensus 819 ~~l~~~l~g~~~~~---------~e~~~---~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~ 877 (1117)
..+.+++.++.+.. +++.. ...+|...|..+++.|+.|.+|++.|++.+++|||+++++
T Consensus 80 ~~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 80 RKIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp HHHHHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred HHHHHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 66777777554421 12221 2356778899999999999999999999999999987754
No 108
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.19 E-value=1e-10 Score=125.20 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEe
Q 001235 616 SEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKT 695 (1117)
Q Consensus 616 ~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~ 695 (1117)
++++.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++..+.++.........+...+..+.....++..+
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~- 189 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNR- 189 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEE-
T ss_pred HHHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEE-
Confidence 4567789999999999999999999999999999999999999999998888777777777777766555544444443
Q ss_pred eccccCCc------eEEEEEEEEEeecCCCCEEEEEEEEEc
Q 001235 696 HGSKINDD------PITLIVNACASRDLHDNVVGVCFVAQD 730 (1117)
Q Consensus 696 ~~~~~dG~------~~~v~v~~~pi~d~~G~v~gv~~v~~D 730 (1117)
+++|. .+|+.++..|++|.+|++.+++++.+|
T Consensus 190 ---~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 190 ---RRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp ---EECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred ---CCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 45564 899999999999999999999999987
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.17 E-value=5.5e-11 Score=135.01 Aligned_cols=118 Identities=15% Similarity=0.105 Sum_probs=100.0
Q ss_pred HHHhCCCCCCCCeeeeCC---CCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhc
Q 001235 750 AIVQNPNPLIPPIFGSDE---FGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMS 826 (1117)
Q Consensus 750 ~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~ 826 (1117)
.+++++++ +|+++|. +|+|++||+++++++||+++|++|+++. .+.++++.......+...+.
T Consensus 15 ~~~~~~~~---~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~-----------~l~~~~~~~~~~~~~~~~~~ 80 (332)
T 2wkq_A 15 TTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNAR-----------FLQGPETDRATVRKIRDAID 80 (332)
T ss_dssp CCGGGCCS---EEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-----------GGCCTTCCHHHHHHHHHHHH
T ss_pred hHhhcCCC---cEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCch-----------hhcCCCCCHHHHHHHHHHHH
Confidence 35566777 8999999 9999999999999999999999999853 22233444445556677777
Q ss_pred CCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHH
Q 001235 827 GQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHV 881 (1117)
Q Consensus 827 g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el 881 (1117)
.+..+..++++.++||+.+|+.++..|++|.+|++.|++++++|||++++.+++.
T Consensus 81 ~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 81 NQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp TTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred cCCeeEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhc
Confidence 8888899999999999999999999999999999999999999999988777554
No 110
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.15 E-value=3.5e-10 Score=107.81 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=92.4
Q ss_pred HHHHHHhcCccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCc--cccccccCcHHHHHHHHHHHHcCCcceeeEEE
Q 001235 618 MVRLIETATVPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKH--FLTLVEDSSIDTVKRMLYLALQGQEEQNIQFE 692 (1117)
Q Consensus 618 l~~lie~a~~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~--~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~ 692 (1117)
+...++.++++++++|. +|+|+++|+++++++|++.++++|++ +..+.+++........+...+..+.....++.
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 45667889999999999 99999999999999999999999999 44555666655555666666665554433433
Q ss_pred EEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchh
Q 001235 693 IKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQ 734 (1117)
Q Consensus 693 ~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITer 734 (1117)
. .+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 101 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 F----YRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp E----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred E----ECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 3 3678999999999999999999999999999999975
No 111
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.11 E-value=1e-10 Score=110.76 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=86.8
Q ss_pred HHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCC
Q 001235 749 KAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQ 828 (1117)
Q Consensus 749 ~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~ 828 (1117)
+.+++++++ +|+++|.+|+++++|+++++++|++.++++|+.+...+ ++++...+...+.....++
T Consensus 2 ~~l~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 67 (126)
T 3mjq_A 2 KNFLETIED---MILIINREGRLLYANTAVPKKLGYTHEELMSMHILTIT-----------SAGKMAEGEKILAELFAGK 67 (126)
T ss_dssp CTTGGGCSS---EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHH-----------CTTCHHHHHHHHHHHHHTC
T ss_pred hhHHhhCCc---eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHc-----------CchhHHHHHHHHHHHHhCC
Confidence 456778887 89999999999999999999999999999999864322 2344445566667777776
Q ss_pred CCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHH
Q 001235 829 DPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQR 883 (1117)
Q Consensus 829 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~ 883 (1117)
.. ..++++.+++|..+|+.++..|..+ +...+++++++|||++++++.+...
T Consensus 68 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~ 119 (126)
T 3mjq_A 68 KE-SLPLSLEKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFL 119 (126)
T ss_dssp CS-EEEEEEECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-----------
T ss_pred Cc-eeEEEEEccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccch
Confidence 65 7888999999999999999987764 3356789999999999988866444
No 112
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.11 E-value=3.6e-11 Score=124.32 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHhCCCCCCCCeeeeC-CCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHH
Q 001235 742 TRIEGDYKAIVQNPNPLIPPIFGSD-EFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIV 820 (1117)
Q Consensus 742 ~~se~~l~~i~~~~~~li~~I~~~D-~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~ 820 (1117)
..++++|+.+++++++ +|+++| .+|+++++|+++++++|++ +++|+++... ++. .....+...
T Consensus 33 ~~~~~~l~~l~~~~~~---~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~-~~~----------~~~~~~~~~ 96 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREV-YPE----------LEGQQIYEM 96 (185)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHH-CTT----------SCSSSSHHH
T ss_pred hhhHHHHHHHHhcCCc---eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHH-CCc----------hhhhhHHHH
Confidence 4567789999999999 899999 9999999999999999999 9999986433 221 112223345
Q ss_pred HHHHhcCCCCce-EeEEE--EecC--CcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHH
Q 001235 821 LNKAMSGQDPEK-VPFGF--FARN--GKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALH 880 (1117)
Q Consensus 821 l~~~l~g~~~~~-~e~~~--~~~d--G~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~e 880 (1117)
+..++..+.+.. .++.+ .+++ |..+|+.++..|+.+.+|.+.|++++++|||++++++++
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 97 LDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHHHHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HHHHHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 566664444433 22333 2223 788999999999999999999999999999999998876
No 113
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.10 E-value=1.1e-09 Score=112.98 Aligned_cols=152 Identities=10% Similarity=0.099 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHH
Q 001235 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAAR 279 (1117)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r 279 (1117)
..+++.++...|.+ +.|++++++.+++.+++++|+||+.||.|+++....+.++...++. .+..+|. ..-..
T Consensus 28 ~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~ 99 (184)
T 3p01_A 28 QMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQTLSTIQGFYSQQGT---VNNWLNQ---DPLTN 99 (184)
T ss_dssp HHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEESSSS---CCCCGGG---CHHHH
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCceeeeeeeccccCc---cCcccCC---CcHHH
Confidence 34556667777777 6799999999999999999999999999944322222222333332 2333442 23455
Q ss_pred HHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccc
Q 001235 280 FLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRK 359 (1117)
Q Consensus 280 ~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~ 359 (1117)
..+..++.-+|.|+...| + .++..++...|++|.|++||+.+ |
T Consensus 100 ~~~~~~~~~~i~d~~~~~-~----------------------~~~~~~~~~~~~~s~l~vPL~~~--------------~ 142 (184)
T 3p01_A 100 EAIATGQIQVAANIAKDP-K----------------------LASISQYQDNGIQSHVVIPITYR--------------N 142 (184)
T ss_dssp HHHHHCSCEEESCGGGCH-H----------------------HHTCHHHHHHTCCEEEEEEEEET--------------T
T ss_pred HHHhhCCeEEEeccccCc-c----------------------ccchhHHHHhCccEEEEEEEEEC--------------C
Confidence 667788888888876554 1 11246788899999999999988 9
Q ss_pred cceeeEEeeccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 001235 360 RLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 360 ~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
++||.|.+|+..|+.|+.+....++.++..+++.|..
T Consensus 143 ~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~aiAi~n 179 (184)
T 3p01_A 143 EMLGVLSLQWQQPISLREDELTLIHLSAQLVAIALTS 179 (184)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987789999999999999999998888753
No 114
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.09 E-value=8.6e-10 Score=100.15 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=82.7
Q ss_pred ccEEEEeC---CCcEEeecHHHHHHcCCCcccccCCc-cc-cccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccC
Q 001235 627 VPILAVDV---DGLVNGWNTKIAELTGLSVDKAIGKH-FL-TLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKIN 701 (1117)
Q Consensus 627 ~gi~~~D~---dG~I~~~N~a~~~l~G~s~eeliG~~-~~-dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~d 701 (1117)
.+++++|. +|+|+++|+++++++|++.++++|++ +. .+.++.........+...+.++.....++.. .+++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 77 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAF----YRKD 77 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE----ECTT
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEE----EcCC
Confidence 57899997 59999999999999999999999999 24 4445555555455555666555544444433 3678
Q ss_pred CceEEEEEEEEEeecCCCCEEEEEEEEEccchh
Q 001235 702 DDPITLIVNACASRDLHDNVVGVCFVAQDITPQ 734 (1117)
Q Consensus 702 G~~~~v~v~~~pi~d~~G~v~gv~~v~~DITer 734 (1117)
|..+|+.++..|+.+.+|++.+++++++|||++
T Consensus 78 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 78 GSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp SCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 999999999999999999999999999999985
No 115
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=109.25 Aligned_cols=110 Identities=12% Similarity=0.063 Sum_probs=90.5
Q ss_pred HHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcC-CC
Q 001235 751 IVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG-QD 829 (1117)
Q Consensus 751 i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g-~~ 829 (1117)
+++++++ +|+..|.+|+++++|+++++++||+++|++|+.+. .+.+|++...+...+.+.+.+ +.
T Consensus 8 ~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~-----------~~~~p~d~~~~~~~~~~~~~~~~~ 73 (121)
T 2kdk_A 8 INVKPTE---FITRFAVNGKFVYVDQRATAILGYLPQELLGTSCY-----------EYFHQDDHNNLTDKHKAVLQSKEK 73 (121)
T ss_dssp CCCCSSE---EEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTT-----------TTBCSSSHHHHHHHHHHHHTSSSC
T ss_pred cccCCcc---EEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHH-----------HeeCHHHHHHHHHHHHHHHhCCCC
Confidence 4556666 79999999999999999999999999999999743 344567777677777777765 44
Q ss_pred CceEeEEEEecCCcEEEEEEEEeeeeCCC-CCEEEEEeehhHHHHH
Q 001235 830 PEKVPFGFFARNGKYAECLLCVNKKLDRE-GAVTGVFCFLQLASHE 874 (1117)
Q Consensus 830 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~-G~v~g~v~i~~DITer 874 (1117)
....++++.++||+++|+..+..|++|.+ +.+.+++++.+||++.
T Consensus 74 ~~~~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 74 ILTDSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSC
T ss_pred CccEEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEecccc
Confidence 45889999999999999999999999886 5677788888888753
No 116
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.07 E-value=2.7e-10 Score=110.87 Aligned_cols=115 Identities=12% Similarity=0.129 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc---eeeEEE
Q 001235 616 SEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE---QNIQFE 692 (1117)
Q Consensus 616 ~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~---~~~e~~ 692 (1117)
+.++.++++++++|+++|.+|+|+++|++++++|||+.++++|+++.+++++++...+...+......+.. ......
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPA 86 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCc
Confidence 46788999999999999999999999999999999999999999999999888766544443333222211 001122
Q ss_pred EEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccch
Q 001235 693 IKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITP 733 (1117)
Q Consensus 693 ~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITe 733 (1117)
.+....++||+.+|+.++..|+.+ ++.. ++++++|...
T Consensus 87 ~E~~~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~~ 124 (129)
T 3mfx_A 87 QETTLICASGKAKDVELSISYIPG--HEPM-FVMVMHDLEH 124 (129)
T ss_dssp EEEEEECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC--
T ss_pred eEEEEEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechhh
Confidence 333345889999999999999983 3333 4566677643
No 117
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.06 E-value=1.1e-09 Score=104.54 Aligned_cols=106 Identities=11% Similarity=0.199 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcC------------CCcccccCCccccccccCcHHHHHHHHHHHHc
Q 001235 615 TSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTG------------LSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQ 682 (1117)
Q Consensus 615 ~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G------------~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~ 682 (1117)
..+++.+++++++||+++|.+|+|+++|+++++++| ++.++++|+++.++++.. ......+.. ..
T Consensus 4 ~~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~--~~~~~~~~~-~~ 80 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQRHLLAN-LT 80 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH--HHHHHHHHH-CS
T ss_pred HHHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH--HHHHHHHhC-cC
Confidence 357889999999999999999999999999999995 899999999999887532 111222222 21
Q ss_pred CCcceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchh
Q 001235 683 GQEEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQ 734 (1117)
Q Consensus 683 g~~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITer 734 (1117)
... ...+. .+| +++.++..|++|.+|++.|++++++|||++
T Consensus 81 --~~~--~~~~~-----~~~--~~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 81 --GVH--KAELN-----LGG--RRFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp --SCE--EEEEE-----ETT--EEEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred --CCc--EEEEE-----ECC--EEEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 111 22222 123 466889999999999999999999999984
No 118
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.06 E-value=6.2e-11 Score=112.73 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCccee
Q 001235 609 KELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQN 688 (1117)
Q Consensus 609 ~eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~ 688 (1117)
..+....+..+.+++++|+|++++|.+|+|+++|+++++++|++.++++|+++.+++++.....+...+..++..+....
T Consensus 5 ~~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
T 3fg8_A 5 HHHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQ 84 (118)
T ss_dssp --------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEE
T ss_pred cccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceE
Confidence 34555667778899999999999999999999999999999999999999999999987777777777777776665433
Q ss_pred eEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchh
Q 001235 689 IQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQ 734 (1117)
Q Consensus 689 ~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITer 734 (1117)
.+ ++... .+| +|+.++..|+.+ |++++++|||+|
T Consensus 85 ~~--~~~~~--~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 85 TR--VDSLY--SPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EE--EECSS--STT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EE--EEEEc--CCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 22 22221 134 688888888765 478899999985
No 119
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.05 E-value=6.7e-10 Score=119.74 Aligned_cols=122 Identities=12% Similarity=0.070 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhc------------CCChhhHhhcchhhhhcCCchhhhhccCh
Q 001235 744 IEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLT------------GWKREEVIDKLLLAEVFGTNMACCRLKNQ 811 (1117)
Q Consensus 744 se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~------------G~~~eEliGk~l~~ei~~~~~~~~~l~~~ 811 (1117)
...+++.++++++. +|+++|.+|+|+++|+++++++ ||++++++|+++. .+++. +
T Consensus 20 e~~~l~~iLd~~~~---~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~-~~~~~---------~ 86 (233)
T 3vol_A 20 HMARIKSALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKN---------P 86 (233)
T ss_dssp HHHHHHHHHTTSSS---EEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGG-GGSSS---------H
T ss_pred HHHHHHHHHhcCCC---cEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHH-HHcCC---------H
Confidence 34678889999988 9999999999999999999998 8999999999853 22221 2
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHHHHHHHH
Q 001235 812 EAFVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTA 889 (1117)
Q Consensus 812 d~~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~~ae~~~ 889 (1117)
.... .+...+.+ .+..++. .+|. |+.++++|++|.+|++.|++++++|||++++.+.++++..+...
T Consensus 87 ~~~~----~~~~~~~~--~~~~~~~---~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~ 153 (233)
T 3vol_A 87 AHQR----HLLANLTG--VHKAELN---LGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA 153 (233)
T ss_dssp HHHH----HHHHTCCS--CEEEEEE---ETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHhccc--ceeEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh
Confidence 2111 12222222 3333332 3554 77899999999999999999999999999999988877666554
No 120
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.04 E-value=3.6e-10 Score=130.11 Aligned_cols=109 Identities=5% Similarity=-0.065 Sum_probs=97.7
Q ss_pred CccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCCceE
Q 001235 626 TVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPI 705 (1117)
Q Consensus 626 ~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG~~~ 705 (1117)
...++..|.+|+++++|+++..++||+++|++|+++.+++||+|.+.+...+..++.++.....++++. +++|+++
T Consensus 251 ~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~----~kdG~~v 326 (361)
T 4f3l_A 251 EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFL----TKGQQWI 326 (361)
T ss_dssp CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEE----CTTSEEE
T ss_pred ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEE----ecCCCEE
Confidence 456777899999999999999999999999999999999999999999998988887766555555554 7899999
Q ss_pred EEEEEEEEeecC-CCCEEEEEEEEEccchhhhhh
Q 001235 706 TLIVNACASRDL-HDNVVGVCFVAQDITPQKTVM 738 (1117)
Q Consensus 706 ~v~v~~~pi~d~-~G~v~gv~~v~~DITerK~aE 738 (1117)
|+..++.|++|+ +|++.+++++.+|||+++..+
T Consensus 327 Wv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 327 WLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 999999999998 899999999999999998765
No 121
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.04 E-value=3.5e-10 Score=131.29 Aligned_cols=108 Identities=11% Similarity=0.056 Sum_probs=92.7
Q ss_pred cCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc-eeeEEEEEeeccccCCc
Q 001235 625 ATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE-QNIQFEIKTHGSKINDD 703 (1117)
Q Consensus 625 a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~-~~~e~~~~~~~~~~dG~ 703 (1117)
....++..|.+|+++++|+++..++||+++|++|+++.+++||+|.+.+...+..++.++.. ...++++. ++||+
T Consensus 277 ~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~----~kdG~ 352 (387)
T 4f3l_B 277 SMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFK----IKDGS 352 (387)
T ss_dssp CCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEE----CTTSC
T ss_pred CceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEE----ccCCC
Confidence 45678889999999999999999999999999999999999999999999999998865543 33455554 78999
Q ss_pred eEEEEEEEEEeecC-CCCEEEEEEEEEccchhhh
Q 001235 704 PITLIVNACASRDL-HDNVVGVCFVAQDITPQKT 736 (1117)
Q Consensus 704 ~~~v~v~~~pi~d~-~G~v~gv~~v~~DITerK~ 736 (1117)
++|+..++.+++|+ +|++.+++++.+|||+||+
T Consensus 353 ~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 353 FITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999999997 8999999999999999985
No 122
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.04 E-value=3.2e-10 Score=106.11 Aligned_cols=114 Identities=11% Similarity=0.007 Sum_probs=84.2
Q ss_pred hhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHH
Q 001235 738 MDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNL 817 (1117)
Q Consensus 738 E~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~ 817 (1117)
+.++++..+.++.+++++++ +|+++|.+|+++++|+++++++||++++++|+++.. +++... ++.
T Consensus 5 ~~~~e~~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~-~~~~~~-------~~~---- 69 (118)
T 3olo_A 5 NIQSELEFKFAHYLINNAVE---ASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQD-IDVDFA-------LHD---- 69 (118)
T ss_dssp --CHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGG-TBTTGG-------GSC----
T ss_pred HHHHHHHHHHHHHHHhcCCc---eEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhh-cccccC-------HHH----
Confidence 34445556678899999998 899999999999999999999999999999998643 222210 111
Q ss_pred HHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 818 GIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 818 ~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
+.. +..+.....++++.+++|+.+|+.++..|+.+.++ .+++++++|||
T Consensus 70 ---~~~-~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 70 ---WEE-IRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp ---HHH-HHHHSEEEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred ---HHH-HHhcCcEEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 111 11233567888999999999999999999876543 35778999987
No 123
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.02 E-value=7.2e-10 Score=104.78 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=69.5
Q ss_pred HHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccc
Q 001235 620 RLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSK 699 (1117)
Q Consensus 620 ~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~ 699 (1117)
.++++++++|+++|.+|+|+|+|+++++++||+++|++|+++.+++||++.+.+...+. ........+++ ..+
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r----~~~ 75 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFR----FIK 75 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEE----EEC
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEE----EEc
Confidence 47899999999999999999999999999999999999999999999999998766553 22222233443 348
Q ss_pred cCCceEEEEEEEEEeecCCCCE
Q 001235 700 INDDPITLIVNACASRDLHDNV 721 (1117)
Q Consensus 700 ~dG~~~~v~v~~~pi~d~~G~v 721 (1117)
+||+.+|+.++..++++.++..
T Consensus 76 kdG~~~wve~~~~~v~~~~~~~ 97 (111)
T 2vlg_A 76 KDHTIVWVEAAVEIVTTRAERT 97 (111)
T ss_dssp TTSCEEEEEEEEEEC-------
T ss_pred CCCCEEEEEEEEEEEecccCCc
Confidence 8999999999999999876643
No 124
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.00 E-value=4.8e-10 Score=110.33 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=93.3
Q ss_pred EEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeC---CCCceeechhhHHHhcCCChhhHhhcchhhhhcCC
Q 001235 725 CFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSD---EFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGT 801 (1117)
Q Consensus 725 ~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D---~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~ 801 (1117)
+++..|||.++..+..+ .++++. + +|+++| .+|+|+++|+++++++||++++++|+++.. +++
T Consensus 13 ~~~~~~~~~r~~~~~~~--------~~~~~~-~---~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~-l~~- 78 (149)
T 3d72_A 13 MGYLIQIMNRPNPQVEL--------GPVDTS-V---ALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRF-LQS- 78 (149)
T ss_dssp HHHHHHHHHCSSCSSCC--------CSCCTT-S---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG-GGS-
T ss_pred eeeeehhhhCcchhHHH--------HhhcCC-c---cEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhH-hCC-
Confidence 34456777776654432 344543 3 899999 799999999999999999999999998532 221
Q ss_pred chhhhhccChhH-----------HHHHHHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhH
Q 001235 802 NMACCRLKNQEA-----------FVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQL 870 (1117)
Q Consensus 802 ~~~~~~l~~~d~-----------~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~D 870 (1117)
++. .......+...+..+..+..++.+.+++|+.+|+.++..|+++.+|++.+++++++|
T Consensus 79 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 79 ---------PDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp ---------TTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred ---------ccccccccccccccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 111 222334455556666678889999999999999999999999999999999999876
No 125
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.00 E-value=1.3e-09 Score=107.27 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=84.0
Q ss_pred HHHhcCccEEEEe---CCCcEEeecHHHHHHcCCCcccccCCccccccccCc-----------HHHHHHHHHHHHcCCcc
Q 001235 621 LIETATVPILAVD---VDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSS-----------IDTVKRMLYLALQGQEE 686 (1117)
Q Consensus 621 lie~a~~gi~~~D---~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~-----------~~~~~~~l~~~l~g~~~ 686 (1117)
++++ +++++++| .+|+|+++|+++++++||+.++++|+++..+++++. .......+...+..+..
T Consensus 31 ~~~~-~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDT-SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCT-TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcC-CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 4556 48999999 799999999999999999999999999998888763 34444444555544444
Q ss_pred eeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEc
Q 001235 687 QNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQD 730 (1117)
Q Consensus 687 ~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~D 730 (1117)
...++.. .+++|..+|+.++..|+++.+|++.+++++++|
T Consensus 110 ~~~e~~~----~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 110 VQVEVVN----FKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEEEEEE----ECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred eEEEEEE----ECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 3334333 378999999999999999999999999998876
No 126
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.98 E-value=4e-11 Score=148.02 Aligned_cols=122 Identities=11% Similarity=-0.057 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHH
Q 001235 742 TRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVL 821 (1117)
Q Consensus 742 ~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l 821 (1117)
++...++..+++++++ +|+..|.+|+|++||+++++++||+.+|++|+.... ..++++...+....
T Consensus 514 ~e~~~~~~~lle~a~~---~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~-----------~~~~~~~~~~~~i~ 579 (635)
T 4eho_A 514 REQVPQASSQVHASMQ---PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLA-----------GFFVESNDFLRNVA 579 (635)
T ss_dssp HHTSSSHHHHHHHCSS---CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGT-----------TSSSSCTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhh-----------ccCCCCHHHHHHHH
Confidence 3334467788898888 899999999999999999999999999999987432 22344444444444
Q ss_pred HHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHH
Q 001235 822 NKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQA 878 (1117)
Q Consensus 822 ~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e 878 (1117)
..+..+..+..|++++++||+.+|+.+++.|++|.+|+++|++++.+|||++|++|
T Consensus 580 -~~l~~g~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 580 -ELIDHGRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp -HHHHHCCCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred -HHHHcCCcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 34444556788999999999999999999999999999999999999999988653
No 127
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.52 E-value=6.1e-11 Score=132.96 Aligned_cols=170 Identities=11% Similarity=0.064 Sum_probs=116.7
Q ss_pred EEEEEEEeecCCCCEEEEEEEEE-ccchh---hhhhhhHhhHHHHHHHHHh-----------------CCCCCCCCeeee
Q 001235 707 LIVNACASRDLHDNVVGVCFVAQ-DITPQ---KTVMDKFTRIEGDYKAIVQ-----------------NPNPLIPPIFGS 765 (1117)
Q Consensus 707 v~v~~~pi~d~~G~v~gv~~v~~-DITer---K~aE~~L~~se~~l~~i~~-----------------~~~~li~~I~~~ 765 (1117)
+..+..|+++ +|+++|++++.+ |||++ +..|...++....|..++. ++++ ||+++
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~d---GIivv 186 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGD---GFIRL 186 (305)
Confidence 6889999998 689999999999 99998 5666666777777777664 5555 99999
Q ss_pred CCCCceeechhhHHHhcC---CChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcC-CCCceEeEEEEecC
Q 001235 766 DEFGWCCEWNPAMVKLTG---WKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG-QDPEKVPFGFFARN 841 (1117)
Q Consensus 766 D~~g~i~~~N~a~~~l~G---~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g-~~~~~~e~~~~~~d 841 (1117)
|.+|+|+++|++++++|| ++ ++++|+++...+ +.... .+.....+...+...+.+ +.....++.. .
T Consensus 187 D~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~-~~~~~-----~~~~~~~~~~~l~~vl~~~~~~~~~ei~~---~ 256 (305)
T 2ykf_A 187 DVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDAT-RPLIS-----DPFEAHEVDEHVQDLLAGDGKGMRMEVDA---G 256 (305)
Confidence 999999999999999985 44 789999864322 21000 000000112222223343 3333222221 2
Q ss_pred CcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001235 842 GKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALHVQRLSEQTALKRLKALAYTKR 901 (1117)
Q Consensus 842 G~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~el~~~ae~~~~~k~~~la~isH 901 (1117)
.+++.++..|+.+ +|++.|++.+++|||+.++.+++++ .|...+.+|+|
T Consensus 257 --~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~--------~K~~~IrEIHH 305 (305)
T 2ykf_A 257 --GATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALI--------SKDATIREIHH 305 (305)
Confidence 3567788899986 5889999999999999998886653 35556677776
No 128
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.95 E-value=2e-09 Score=100.84 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=80.5
Q ss_pred HHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc-eeeEEEEEeec
Q 001235 619 VRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE-QNIQFEIKTHG 697 (1117)
Q Consensus 619 ~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~-~~~e~~~~~~~ 697 (1117)
..+++++++|++++|.+|+|+++|+++++++|++.++++|+++.+++++... ....+..++..+.. ...++.+
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 83 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF---- 83 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE----
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE----
Confidence 4589999999999999999999999999999999999999999988765331 12234444433332 2223332
Q ss_pred cccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 698 SKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 698 ~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 2 46889999999999999 776 68999999985
No 129
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.92 E-value=2.5e-09 Score=97.00 Aligned_cols=103 Identities=18% Similarity=0.263 Sum_probs=83.5
Q ss_pred CeeeeCC---CCceeechhhHHHhcCCChhhHhhcch-hhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCCceEeEE
Q 001235 761 PIFGSDE---FGWCCEWNPAMVKLTGWKREEVIDKLL-LAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFG 836 (1117)
Q Consensus 761 ~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliGk~l-~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~ 836 (1117)
+|++.|. +|+++++|+++++++|+++++++|+.+ ...+.+ ++....+...+...+.++.....++.
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG----------PCTQRRAAAQIAQALLGAEERKVEIA 72 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCC----------TTCCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccC----------CcCCHHHHHHHHHHHhcCCCceEEEE
Confidence 6888886 599999999999999999999999972 333222 22222334455566667777888889
Q ss_pred EEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHH
Q 001235 837 FFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASH 873 (1117)
Q Consensus 837 ~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITe 873 (1117)
+.+++|+.+|+.++..|+.+.+|.+.+++++++|||+
T Consensus 73 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe 109 (110)
T 1byw_A 73 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVME 109 (110)
T ss_dssp EECTTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EEcCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccC
Confidence 9999999999999999999999999999999999996
No 130
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=98.92 E-value=2.2e-08 Score=102.68 Aligned_cols=154 Identities=11% Similarity=0.100 Sum_probs=112.4
Q ss_pred HHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCC-------CCCccCCcCCCCCc
Q 001235 203 LAAKAITR-LQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSG-------LEPYLGLHYPATDI 274 (1117)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~-------~~~~lg~~~p~~di 274 (1117)
++..+... +.+ ..|++++++.+++++++++|+||+.||-+++|+..-+..-..... ....-..++|...
T Consensus 14 ~Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 90 (189)
T 2zmf_A 14 FLLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK- 90 (189)
T ss_dssp HHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS-
T ss_pred HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc-
Confidence 34444444 345 569999999999999999999999999999988765544332211 1122333444332
Q ss_pred hHHHHHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCc
Q 001235 275 PQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTL 354 (1117)
Q Consensus 275 p~~~r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~ 354 (1117)
--....+..++.-.|+|+...|- .+.+......+++++.|++||+.+
T Consensus 91 -~~~~~v~~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~---------- 137 (189)
T 2zmf_A 91 -GIAGQVARTGEVLNIPDAYADPR----------------------FNREVDLYTGYTTRNILCMPIVSR---------- 137 (189)
T ss_dssp -HHHHHHHHHCCCEEESCGGGSTT----------------------CCTHHHHHHCCCCCCEEEEEEEET----------
T ss_pred -cHHHHHHHhCCeEEEeccccccc----------------------ccccchhhcccccceEEEeeeccc----------
Confidence 12345667777778888765541 245566788899999999999987
Q ss_pred ccccccceeeEEeecc-CCCCCCchhHHHHHHHHHHHHHHHHH
Q 001235 355 PQKRKRLWGLVVCHNT-TPRFVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 355 ~~~~~~lWGl~~~hh~-~p~~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
|++||.|..+++ .|+.++.+....++.++..+|+.|..
T Consensus 138 ----~~~~Gvl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~n 176 (189)
T 2zmf_A 138 ----GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHC 176 (189)
T ss_dssp ----TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CceeeEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999977654 68999999999999999999988864
No 131
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.92 E-value=3.7e-09 Score=100.62 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=92.1
Q ss_pred HHHHHhCCCCCCCCeeeeCC---CCceeechhhHHHhcCCChhhHhhcch-hhhhcCCchhhhhccChhHHHHHHHHHHH
Q 001235 748 YKAIVQNPNPLIPPIFGSDE---FGWCCEWNPAMVKLTGWKREEVIDKLL-LAEVFGTNMACCRLKNQEAFVNLGIVLNK 823 (1117)
Q Consensus 748 l~~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliGk~l-~~ei~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (1117)
+...+++++. +++++|. +|+++++|+++++++|++.++++|+.+ ...+.. ++........+..
T Consensus 21 ~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~ 87 (138)
T 2l0w_A 21 IIRKFEGQSR---KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHG----------PRTQRRAAAQIAQ 87 (138)
T ss_dssp HHHHHTTTTS---EEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCC----------TTCCHHHHHHHHH
T ss_pred HHHHHhcCCC---CEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCC----------cccchhHHHHHHH
Confidence 4455666777 8999999 999999999999999999999999973 333322 2222334445666
Q ss_pred HhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHH
Q 001235 824 AMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASH 873 (1117)
Q Consensus 824 ~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITe 873 (1117)
.+..+.....++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~ 137 (138)
T 2l0w_A 88 ALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVME 137 (138)
T ss_dssp HTTCSSCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred HHhhcCCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccC
Confidence 77777778888899999999999999999999999999999999999985
No 132
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.88 E-value=7.8e-10 Score=126.14 Aligned_cols=124 Identities=18% Similarity=0.265 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeE
Q 001235 611 LEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQ 690 (1117)
Q Consensus 611 L~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e 690 (1117)
+++++++++.++++++++|+++|.+|+|++||+++++++||+.++++|+++.++.+++.. ...+...+..+... .
T Consensus 3 l~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~---~~~~~~~~~~~~~~--~ 77 (349)
T 3a0r_A 3 VEHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEI---GSVAESVFENKEPV--F 77 (349)
T ss_dssp ------CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHH---HHHHHHHHHHCCCC--E
T ss_pred hHHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHH---HHHHHHHHhcCCce--e
Confidence 345566778899999999999999999999999999999999999999999988544332 33344444433321 1
Q ss_pred EEEEeeccccCCceEEEEEEEEEeecCCCCE-EEEEEEEEccchhhhhhhhHhhHH
Q 001235 691 FEIKTHGSKINDDPITLIVNACASRDLHDNV-VGVCFVAQDITPQKTVMDKFTRIE 745 (1117)
Q Consensus 691 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v-~gv~~v~~DITerK~aE~~L~~se 745 (1117)
.. ...++.+|+.++..|+++.+|.. .|++++++|||++|++|+++++.+
T Consensus 78 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~~ 127 (349)
T 3a0r_A 78 --LN----FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRE 127 (349)
T ss_dssp --EE----CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHHH
T ss_pred --ec----ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHHH
Confidence 11 11235578899999999988876 599999999999999998877644
No 133
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.87 E-value=7.8e-09 Score=97.62 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=69.3
Q ss_pred HHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCC
Q 001235 750 AIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQD 829 (1117)
Q Consensus 750 ~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~ 829 (1117)
.+++++++ .|++.|.+|+|+++|+++++++||+++|++|+++. .+.||++...+...+. ....
T Consensus 3 ~lle~~~d---~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~-----------~~ihp~D~~~~~~~~~---~~~~ 65 (111)
T 2vlg_A 3 FPLQTKTD---IHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLK-----------TFLHEEDQFLVESYFY---NEHH 65 (111)
T ss_dssp ------CC---EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-----------GGBCGGGHHHHHHHHH---CSCC
T ss_pred chhhcCCC---EEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHH-----------HeECHhHHHHHHHHHh---ccCC
Confidence 46777777 79999999999999999999999999999999853 5567888777665543 2334
Q ss_pred CceEeEEEEecCCcEEEEEEEEeeeeCCCCC
Q 001235 830 PEKVPFGFFARNGKYAECLLCVNKKLDREGA 860 (1117)
Q Consensus 830 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~ 860 (1117)
....++++.++||+++|++.++.++.+.++.
T Consensus 66 ~~~~e~r~~~kdG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 66 LMPCTFRFIKKDHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp SSCEEEEEECTTSCEEEEEEEEEEC------
T ss_pred CccEEEEEEcCCCCEEEEEEEEEEEecccCC
Confidence 4567899999999999999999999987654
No 134
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.86 E-value=1.2e-09 Score=102.49 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=76.1
Q ss_pred hcCccEEEEeCC-CcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCC-cce---eeEEEEEeecc
Q 001235 624 TATVPILAVDVD-GLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQ-EEQ---NIQFEIKTHGS 698 (1117)
Q Consensus 624 ~a~~gi~~~D~d-G~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~-~~~---~~e~~~~~~~~ 698 (1117)
+.+++|+++|.+ |+|+++|++++++|||+.++++|+++.+++++.+............... ... ..++. .+
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 81 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVD----II 81 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEE----EC
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEE----EE
Confidence 455799999999 9999999999999999999999999999998876554332222122211 110 11222 34
Q ss_pred ccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 699 KINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 699 ~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
+++|..+|+.++..|+.+.++. +++++++|++
T Consensus 82 ~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 82 SRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred ecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 7899999999999999876553 5678888875
No 135
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.86 E-value=8.5e-09 Score=118.82 Aligned_cols=115 Identities=15% Similarity=0.238 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEe
Q 001235 616 SEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKT 695 (1117)
Q Consensus 616 ~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~ 695 (1117)
+++..+++++++||+++|.+|+|++||++ +++| ++.++++|+++.+++++.....+...+.....|. ....++.+.
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~~~~~l~~~l~~g~-~~~~~~~~~- 314 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVYVVNKILKAFKEGR-KKEATFWLR- 314 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHHHHHHHHHHHHHTS-CSCEEEEEE-
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHHHHHHHHHHHHcCC-ceEEEEEEe-
Confidence 35778999999999999999999999999 9999 8999999999999887665554544444444443 333333332
Q ss_pred eccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhh
Q 001235 696 HGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDK 740 (1117)
Q Consensus 696 ~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~ 740 (1117)
.+| +++.++..|++|.+|++.|++.+++|||+.++.+++
T Consensus 315 ----~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 315 ----LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp ----ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSC
T ss_pred ----eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHH
Confidence 134 688999999999999999999999999999998765
No 136
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=98.85 E-value=5e-08 Score=98.04 Aligned_cols=154 Identities=15% Similarity=0.137 Sum_probs=114.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCe
Q 001235 208 ITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKV 287 (1117)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~ 287 (1117)
...|.+ +.+++++++.+++.+++++|+||+.||-++++...-.+.-+..+.-...-+..||-.+=..-....+..++.
T Consensus 8 ~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (169)
T 3oov_A 8 SSRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQV 85 (169)
T ss_dssp HHHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCC
T ss_pred HHHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCC
Confidence 344555 679999999999999999999999999999887554444444444344566777654435566777888888
Q ss_pred EEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEe
Q 001235 288 RMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVC 367 (1117)
Q Consensus 288 r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~ 367 (1117)
-+|.|+...|-...+. + ..+++...|+++.|++||+.+ |+++|.|..
T Consensus 86 ~~i~d~~~~~~~~~~~------------------~-~~~~~~~~~~~s~l~vPl~~~--------------~~~iGvl~~ 132 (169)
T 3oov_A 86 YMIDDVSAYPTDFRLQ------------------S-PYDAIRALRSKSFVICPIVVK--------------GEAIGVFAV 132 (169)
T ss_dssp EEESCGGGSCGGGSCC------------------T-TGGGCGGGCCSSEEEEEEEET--------------TEEEEEEEE
T ss_pred EEeccccchhhhhhcc------------------c-cHHHHHhcCcCcEEEEEEEeC--------------CcEEEEEEE
Confidence 8888876654211000 0 023466789999999999987 999999999
Q ss_pred eccCCC-CCCchhHHHHHHHHHHHHHHHHH
Q 001235 368 HNTTPR-FVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 368 hh~~p~-~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
++..++ .++.+....++.++..++..|..
T Consensus 133 ~~~~~~~~f~~~d~~~l~~~a~~~a~ai~n 162 (169)
T 3oov_A 133 DNRSSRRSLNDTDVDTIKLFADQASSAIVR 162 (169)
T ss_dssp ECTTSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 998765 48989999999999988888754
No 137
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.85 E-value=3.1e-07 Score=106.83 Aligned_cols=317 Identities=11% Similarity=0.097 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCCCcHHH----HHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHH
Q 001235 205 AKAITRLQSLPSGSMER----LCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARF 280 (1117)
Q Consensus 205 ~~~~~~~~~~~~~~~~~----~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~ 280 (1117)
...+..+++ .+++. +++.+++.+++++|+|++.||.++++. ++....+....-....+.++|... --+..
T Consensus 12 ~~~~~~l~~---~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~-~~l~~~~~~g~~~~~~~~~~~~~~--g~~g~ 85 (398)
T 1ykd_A 12 HQTLSMLDS---HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEK-QELWSIVAAGEGDRSLEIRIPADK--GIAGE 85 (398)
T ss_dssp HHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTT-TEEEEEEECCGGGCCCCCEEETTS--HHHHH
T ss_pred HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCC-CeEEEEeecCCCCccceeecCCCC--chhhh
Confidence 344444543 35554 666777779999999999999999885 455555443322334566777542 23445
Q ss_pred HHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCccccccc
Q 001235 281 LFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKR 360 (1117)
Q Consensus 281 l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~ 360 (1117)
.+..++.-.|+|+....- |.--+++...+..+++++.|++||+.. +|+
T Consensus 86 v~~~~~~v~i~d~~~~~~-------------------~~~~~~~~~~~~~~~~~s~l~vPl~~~-------------~g~ 133 (398)
T 1ykd_A 86 VATFKQVVNIPFDFYHDP-------------------RSIFAQKQEKITGYRTYTMLALPLLSE-------------QGR 133 (398)
T ss_dssp HHHHCCCEEECSCGGGSG-------------------GGHHHHHHHHHHCCCCSCEEEEEEECS-------------SCC
T ss_pred hhccCcEEeccchhcccc-------------------hhhcccccCcccCcCCceEEEEEEECC-------------CCC
Confidence 566777777888754310 011234444556788999999999851 289
Q ss_pred ceeeEEeecc---------------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh-cC
Q 001235 361 LWGLVVCHNT---------------TPRFVPFPLRYACEFLAQVFAIHVNKELELEYQI-LEKNILRTQTLLCDMLM-RD 423 (1117)
Q Consensus 361 lWGl~~~hh~---------------~p~~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~ 423 (1117)
+||.|.+++. .|+.++.+....++.++..++..|......+... ..+.......+...+.. ..
T Consensus 134 ~iGvl~l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~~ 213 (398)
T 1ykd_A 134 LVAVVQLLNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSSL 213 (398)
T ss_dssp EEEEEEEEEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEEEeccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999988 7889999999999999999998886433222211 11111222222222222 11
Q ss_pred CCcccccC-CcchhhhccCCEEEEEEC----CeEEEecC----------CCCHHHHHHHHHHHHhccCCCceEee-cccc
Q 001235 424 APLGIVTQ-SPNIMDLVKCDGAALLYK----NKIWRLGV----------TPNDFQLHDIVSWLSEYHMDSTGLSA-DSLY 487 (1117)
Q Consensus 424 ~~~~~~~~-~~~~~~l~~~~g~a~~~~----~~~~~~G~----------~p~~~~~~~l~~~l~~~~~~~~~~~t-~~l~ 487 (1117)
....+... ...+..+++||+++|+.- +.++.... .|.. ..+..|..... . .++.. |...
T Consensus 214 dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~-~-~~~i~~d~~~ 288 (398)
T 1ykd_A 214 DLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAASG-Q-KLNIPFDLYD 288 (398)
T ss_dssp CHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHHC-C-CEEECSCGGG
T ss_pred CHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhccC-C-eEEecccccc
Confidence 22222222 345677889998888652 23443322 1111 23555555442 2 34444 4322
Q ss_pred cccCCCc----cccccccccEEEEEeC-CC----CEEEEeccCCccEEeeccCCCCCCCCCCCCcccccchhhhhhhhhc
Q 001235 488 DAGYLGA----LALGDVVCGMAAVRIS-PK----DMIFWFRSQTASEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEVVK 558 (1117)
Q Consensus 488 ~~~~p~~----~~~~~~~~g~l~~~~~-~~----~~l~wfR~e~~~~v~W~G~p~~~~~~~~g~~l~PR~SF~~w~e~v~ 558 (1117)
+..|... ...+-....++++||- .+ ..|..++... .|+ .|+.+|+.|....+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~------~~~-------------~~~~~~~~~~~~~~ 349 (398)
T 1ykd_A 289 HPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK------TGE-------------FPPYNPETWPIAPE 349 (398)
T ss_dssp STTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC------SSC-------------CCCCCGGGTTCCCG
T ss_pred CcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC------ccc-------------cccccccccccccc
Confidence 2112111 0012235678999986 23 1222222210 011 23556688999999
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHH
Q 001235 559 TRSLPWKDYEMDAIHSLQLILRNAF 583 (1117)
Q Consensus 559 ~~s~pW~~~El~aa~sL~liL~~~l 583 (1117)
+...+|...+++.+..+...+.-.+
T Consensus 350 ~~~~~f~~~d~~ll~~la~~~a~al 374 (398)
T 1ykd_A 350 CFQASFDRNDEEFMEAFNIQAGVAL 374 (398)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999998888766555544
No 138
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=98.85 E-value=1.1e-07 Score=96.70 Aligned_cols=161 Identities=11% Similarity=0.043 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEE-EeccCCC-CCccCCcCCCCCchHHH
Q 001235 201 YKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVS-EITKSGL-EPYLGLHYPATDIPQAA 278 (1117)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vva-E~~~~~~-~~~lg~~~p~~dip~~~ 278 (1117)
.+++.++...|.+ +.+++++++.+++.+++++|+||+.||-+++++..-.++ +...... ....+..+|..+= -.
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGT--WL 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTS--GG
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCcccc--HH
Confidence 3455666777777 779999999999999999999999999999987665543 2111111 1222333332221 12
Q ss_pred HHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCccccc
Q 001235 279 RFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKR 358 (1117)
Q Consensus 279 r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~ 358 (1117)
...+..++..++ |....+ +.. ....++..+.+...|+++.|++||+.+
T Consensus 81 ~~v~~~~~~~~~-d~~~~~-~~~----------------~~~~~~~~~~~~~~~~~s~l~vPL~~~-------------- 128 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDI-PSF----------------GADGAPLLWTLHELGMRQIVLSPLRSG-------------- 128 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTC-TTT----------------TTTTCHHHHHHHHHTCCEEEEEEEEET--------------
T ss_pred HHHhccCCceEe-chhhcc-ccc----------------CCcchhHHHHHHHcCceEEEEEEEEEC--------------
Confidence 334455555555 654421 000 001134556789999999999999988
Q ss_pred ccceeeEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 001235 359 KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 359 ~~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
++++|.|..+++.|+.++......++.++.++|+.|...
T Consensus 129 ~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~~~a~Ai~na 167 (177)
T 3k2n_A 129 GRVIGFLSFVSAEEKLWSDGDKSLLSGVSSSIAIAVSNA 167 (177)
T ss_dssp TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888643
No 139
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.83 E-value=2.3e-09 Score=101.45 Aligned_cols=108 Identities=11% Similarity=-0.007 Sum_probs=73.1
Q ss_pred HHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHH
Q 001235 744 IEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNK 823 (1117)
Q Consensus 744 se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (1117)
++++|+.+++++++ +|+++|.+|+|+++|+++++++|+++++++|+++...+ +++....+......
T Consensus 17 ~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~ 82 (125)
T 3fc7_A 17 TRKKFESLVSDSPD---GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVM-----------DSEAANQRLEAGKS 82 (125)
T ss_dssp ---------CCSCC---EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSS-----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhC-----------CHHHHHHHHHHHHH
Confidence 78889999999999 89999999999999999999999999999999854222 22333333333344
Q ss_pred HhcCCCCceEeEEEEecCCc-EEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 824 AMSGQDPEKVPFGFFARNGK-YAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 824 ~l~g~~~~~~e~~~~~~dG~-~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
....+... ..++|. .+|+.++..|+.+. |...|++++++|||
T Consensus 83 ~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 83 AVENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HHHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred HhcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 44443322 334455 78999999998765 66788999999987
No 140
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.82 E-value=1.2e-09 Score=102.03 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCC---CcccccCCccccccccCcHHHHHHHHHHHHcCC
Q 001235 608 MKELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGL---SVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQ 684 (1117)
Q Consensus 608 ~~eL~~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~---s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~ 684 (1117)
.++++..+++++.++++++++++++|.+|+|+++|+++++++|+ +.++++|+++.+++++.. +...+.++
T Consensus 7 ~~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~ 79 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDG 79 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccC
Confidence 34556667788999999999999999999999999999999997 889999999998886643 23333333
Q ss_pred cceeeEEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccc
Q 001235 685 EEQNIQFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDIT 732 (1117)
Q Consensus 685 ~~~~~e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DIT 732 (1117)
.... .... ..+| +|+.++..|+.+ +|++.|++++++|||
T Consensus 80 ~~~~-~~~~-----~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 80 TPRR-DEEI-----TIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCC-CCCE-----ESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ceec-cEEE-----EECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 3211 1111 1233 578888999998 888999999999998
No 141
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.82 E-value=7.8e-09 Score=100.44 Aligned_cols=110 Identities=7% Similarity=-0.004 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHh
Q 001235 746 GDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAM 825 (1117)
Q Consensus 746 ~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l 825 (1117)
..++.+++++++ +|+++|.+|+|+++|+++++++||++++++|+++...+.+. +...+...+....
T Consensus 7 ~~l~~i~~~~~d---~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~-----------~~~~~~~~~~~~~ 72 (129)
T 3mfx_A 7 ETIELFIQHLTE---AMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEH-----------HQARYDNLLSHDV 72 (129)
T ss_dssp HHHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTT-----------CCGGGGCTTC---
T ss_pred HHHHHHHhcCCc---eEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChH-----------hHHHHHHHHHHHH
Confidence 468889999998 89999999999999999999999999999999865433322 1111111111111
Q ss_pred cCCC-------CceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 826 SGQD-------PEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 826 ~g~~-------~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
..+. ....|+.+.++||+.+|++++++|+.+ ++.. ++++++|..
T Consensus 73 ~~~~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 73 QLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIPG--HEPM-FVMVMHDLE 123 (129)
T ss_dssp -------CCSCEEEEEEEEECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC-
T ss_pred hcCcccccccCCCceEEEEEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechh
Confidence 1111 235788999999999999999999983 3333 567777653
No 142
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=98.80 E-value=1.9e-07 Score=93.30 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHH
Q 001235 201 YKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARF 280 (1117)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~ 280 (1117)
+..+.++...+.+ +.+++++++.+++.+++++++|++.||-++++...-.+.-+...+-...-+..+|..+ .-...
T Consensus 9 l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~~~ 84 (171)
T 3ci6_A 9 LDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE--GLVGL 84 (171)
T ss_dssp HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS--HHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC--Ceehh
Confidence 3445566677777 6699999999999999999999999999998864444433333332333344555432 24555
Q ss_pred HHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCccccccc
Q 001235 281 LFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKR 360 (1117)
Q Consensus 281 l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~ 360 (1117)
.+..++...+.|+...|- ..+.......|+++.+++||+.+ |+
T Consensus 85 ~~~~~~~~~~~d~~~~~~-----------------------~~~~~~~~~~~~~s~l~vPl~~~--------------~~ 127 (171)
T 3ci6_A 85 VGQREEIVNLENASKHER-----------------------FAYLPETGEEIYNSFLGVPVMYR--------------RK 127 (171)
T ss_dssp HHHHTSCEEESSGGGSTT-----------------------C---------CCCEEEEEEEEET--------------TE
T ss_pred hhccCceEEecCCCcCcc-----------------------hhccccccccccceEEEEeEEEC--------------CE
Confidence 677777778887654431 01111236678999999999987 99
Q ss_pred ceeeEEeeccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 001235 361 LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 361 lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
++|.|.+.+..|+.++...+..++.++..++..|..
T Consensus 128 ~~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 128 VMGVLVVQNKQPQDFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888753
No 143
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=98.80 E-value=5.9e-08 Score=99.18 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=107.4
Q ss_pred CCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCC
Q 001235 216 SGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRA 295 (1117)
Q Consensus 216 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~ 295 (1117)
+.+++++++.+++.+.+++|+|++.||-+++++.-.+++-.-.+....--....|..+ -.....+..++..++.|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4589999999999999999999999999955544444444332221100112333122 24556677788888888754
Q ss_pred cccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCccccccc-ceeeEEeec-cCCC
Q 001235 296 RHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKR-LWGLVVCHN-TTPR 373 (1117)
Q Consensus 296 ~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~-lWGl~~~hh-~~p~ 373 (1117)
.+ .+....++...|+++.+++||..+ ++ +||.|.+++ ..|+
T Consensus 93 ~~-----------------------~~~~~~~~~~~g~~s~~~vPl~~~--------------~~~~~GvL~l~~~~~~~ 135 (181)
T 2qyb_A 93 MT-----------------------KPLTRELMQKEGIKSFAHIPISRK--------------GEPPFGILSVFSRTIVG 135 (181)
T ss_dssp CS-----------------------CHHHHHHHHHTTCCEEEEEEECCT--------------TSCCCEEEEEEESSCSS
T ss_pred CC-----------------------chhhHHHHHhcCcceEEEEEEEeC--------------CCeEEEEEEEecCCCCC
Confidence 42 366778899999999999999876 88 999999999 7899
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 001235 374 FVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 374 ~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
.++.+....++.++..++..|...
T Consensus 136 ~f~~~d~~lL~~la~~~a~al~~a 159 (181)
T 2qyb_A 136 LFNEPFLNLLESLAGQLAQAVKIV 159 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654
No 144
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=98.80 E-value=9.2e-08 Score=96.26 Aligned_cols=158 Identities=9% Similarity=0.070 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHH
Q 001235 198 LQSYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQA 277 (1117)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~ 277 (1117)
++....+.++...+.+ +.+++++++.+++.+.+++|+|++.||-+++++..-.+.-+...+-+..-...+|..+ .-
T Consensus 4 l~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~ 79 (171)
T 3trc_A 4 MNMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GL 79 (171)
T ss_dssp HHHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HH
T ss_pred HHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Ch
Confidence 3445556667777777 6699999999999999999999999999999875433332332222223333555443 33
Q ss_pred HHHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccc
Q 001235 278 ARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQK 357 (1117)
Q Consensus 278 ~r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~ 357 (1117)
....+..++.-+|.|+...|-.. . .| .+...|+++.+++||+.+
T Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~~------------------~-~~----~~~~~~~~s~l~vPl~~~------------- 123 (171)
T 3trc_A 80 IGLVGEREEPINLADAPLHPAYK------------------H-RP----ELGEEDYHGFLGIPIIEQ------------- 123 (171)
T ss_dssp HHHHHHHTSCEEESCGGGSTTCC------------------C-CG----GGCCCCCCEEEEEEEEET-------------
T ss_pred hhHHHhcCCeEEeCCCCCCCccc------------------c-cc----cCCcccccEEEEEeEEEC-------------
Confidence 45666777777788775543100 0 01 124578899999999987
Q ss_pred cccceeeEEeeccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 001235 358 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 358 ~~~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
|+++|.|.+.+..|+.++......++.++..++..|..
T Consensus 124 -~~~~Gvl~~~~~~~~~f~~~d~~~l~~la~~~a~ai~~ 161 (171)
T 3trc_A 124 -GELLGILVIQQLESHHFAEEEEAFCVTLAIHLAAEIAH 161 (171)
T ss_dssp -TEEEEEEEEEESSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CEEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888753
No 145
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.79 E-value=8.1e-09 Score=103.24 Aligned_cols=119 Identities=9% Similarity=0.008 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCCCCCCCeeeeCCCCceeechhh---HHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHH
Q 001235 745 EGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPA---MVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVL 821 (1117)
Q Consensus 745 e~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a---~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l 821 (1117)
..++++++++++. +|+++|.+|+|++||++ +++++| ..++++|+++.. ++ +.........+
T Consensus 18 ~~~l~~IL~~~~~---gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~-~~-----------~~~~~~~v~~i 81 (151)
T 2qkp_A 18 VEQANLILNHLPL---EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVEL-CH-----------PPKVLDKVKKV 81 (151)
T ss_dssp HHHHHHHHHHSSS---EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGG-SS-----------CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHH-hC-----------CHHHHHHHHHH
Confidence 3568899999998 99999999999999999 999999 667899998642 11 22222222334
Q ss_pred HHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHHHH
Q 001235 822 NKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQALH 880 (1117)
Q Consensus 822 ~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e~e 880 (1117)
...+..+.....++.+...+ ..+++.++..|++|.+|++.|++.+++|||+.++.+.+
T Consensus 82 ~~~l~~g~~~~~~~~~~~~~-~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 82 FELLRNGQRDKVNMWFQSER-LGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp HHHHHTTSBSEEEEEEEETT-TTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC
T ss_pred HHHHHcCCccEEEEEEecCC-CCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhh
Confidence 44455455555555553332 12457889999999999999999999999987766544
No 146
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=98.79 E-value=1.1e-07 Score=96.66 Aligned_cols=149 Identities=8% Similarity=-0.009 Sum_probs=106.6
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHh
Q 001235 205 AKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMK 284 (1117)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~ 284 (1117)
.++...|.+ +.+++++++.+++.+.+++|+|++.||.+++++. .+.+ ....+.+..-+..+|-.+= -....+..
T Consensus 18 ~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (181)
T 3e0y_A 18 EEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDG--ITGSVARD 91 (181)
T ss_dssp HHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTS--SHHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCC--eeeehhhc
Confidence 345566666 6699999999999999999999999999999876 3333 3332222333344444322 23456677
Q ss_pred CCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceee
Q 001235 285 NKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGL 364 (1117)
Q Consensus 285 ~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl 364 (1117)
++..+|.|+...|-. .+...+...|+++.+++||+.+ |+++|.
T Consensus 92 ~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~--------------~~~iGv 134 (181)
T 3e0y_A 92 GQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDK--------------KEVYGV 134 (181)
T ss_dssp CCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECS--------------SCEEEE
T ss_pred CCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeC--------------CeEEEE
Confidence 777788887665411 1112244678999999999977 999999
Q ss_pred EEeeccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 001235 365 VVCHNTTPRFVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 365 ~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
|.+++..|+.++......++.++..++..|..
T Consensus 135 l~~~~~~~~~f~~~~~~~l~~la~~~a~al~~ 166 (181)
T 3e0y_A 135 INLNTTSIRSFHEDEIYFVSIIANLILTAIKL 166 (181)
T ss_dssp EEEEESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888853
No 147
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.77 E-value=1.8e-08 Score=96.04 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=76.2
Q ss_pred HHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcC------------CChhhHhhcchhhhhcCCchhhhhccChhH
Q 001235 746 GDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTG------------WKREEVIDKLLLAEVFGTNMACCRLKNQEA 813 (1117)
Q Consensus 746 ~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G------------~~~eEliGk~l~~ei~~~~~~~~~l~~~d~ 813 (1117)
.+++.+++++++ ||+++|.+|+|+++|+++++++| |++++++|+++. .+++. +..
T Consensus 5 ~rl~~il~~~~~---gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~-~~~~~---------~~~ 71 (121)
T 4hi4_A 5 ARIASALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKN---------PAH 71 (121)
T ss_dssp HHHHHHHTTSSS---EEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGG-GGCSS---------HHH
T ss_pred HHHHHHHhcCCc---cEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHH-HhcCC---------HHH
Confidence 578999999999 99999999999999999999996 899999999853 23221 111
Q ss_pred HHHHHHHHHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHH
Q 001235 814 FVNLGIVLNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHE 874 (1117)
Q Consensus 814 ~~~~~~~l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITer 874 (1117)
.. ..+ .... ..+..++. .+|+ ++.++.+|+++.+|++.|++++++|||++
T Consensus 72 ~~---~~~-~~~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 72 QR---HLL-ANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HH---HHH-HHCS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred HH---HHH-hCcC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 11 112 2221 23333332 2554 45789999999999999999999999974
No 148
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.74 E-value=1.4e-07 Score=96.81 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCC-------C-CCccCCcCCC
Q 001235 201 YKLAAKAITRLQSLPS-GSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSG-------L-EPYLGLHYPA 271 (1117)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~-------~-~~~lg~~~p~ 271 (1117)
...+.+....|.+ + .|++++++.+++.+++++|+|++.||-++++.. +.+......+ + +...+.++|.
T Consensus 12 ~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2e4s_A 12 NDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNK-ELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEEEEEEEETTEEEEEECCCCEEET
T ss_pred HHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCC-EEEEEEeccCccccccccccCCcceEeeC
Confidence 3445556666654 4 499999999999999999999999999998754 4433322111 1 2345566664
Q ss_pred CCchHHHHHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccC
Q 001235 272 TDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGD 351 (1117)
Q Consensus 272 ~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~ 351 (1117)
. .--+...+..++.-+|.|+...|- .+.+...+..+++++.|++||+.+
T Consensus 89 ~--~~~~~~v~~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~------- 137 (189)
T 2e4s_A 89 E--KGIAGQVARTGEVLNIPDAYADPR----------------------FNREVDLYTGYTTRNILCMPIVSR------- 137 (189)
T ss_dssp T--SHHHHHHHHHCCCEEESCGGGSTT----------------------CCTHHHHHHCCCCCCEEEEEEEET-------
T ss_pred C--CcHHHHHHHhCCEEEecCCCcCcc----------------------cChhhccccCCccceEEEEEeccC-------
Confidence 4 234556777788778888765431 123455677899999999999987
Q ss_pred CCcccccccceeeEEeeccCCC-CCCchhHHHHHHHHHHHHHHHHHH
Q 001235 352 NTLPQKRKRLWGLVVCHNTTPR-FVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 352 ~~~~~~~~~lWGl~~~hh~~p~-~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
|+++|.|.+++..++ .++......++.++..+++.|...
T Consensus 138 -------~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~na 177 (189)
T 2e4s_A 138 -------GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHCA 177 (189)
T ss_dssp -------TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776 889999999999999998888643
No 149
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.70 E-value=6.4e-08 Score=108.43 Aligned_cols=123 Identities=10% Similarity=0.039 Sum_probs=103.5
Q ss_pred ccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc---eeeEEEEEeeccccCCc
Q 001235 627 VPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE---QNIQFEIKTHGSKINDD 703 (1117)
Q Consensus 627 ~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~---~~~e~~~~~~~~~~dG~ 703 (1117)
..+...+.+|+++++|+++.+++||.++|++|+++.+++||+|.+.+.+.+..+++++.. ...++++. ++||+
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~----~kdG~ 250 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFC----TQNGE 250 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEE----CTTSC
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEE----ccCCC
Confidence 346678899999999999999999999999999999999999999999999998876554 34555655 78999
Q ss_pred eEEEEEEEEEeecC-CCCEEEEEEEEE--------c-----cchhhhhhhhHhhHHHHHHHHHh
Q 001235 704 PITLIVNACASRDL-HDNVVGVCFVAQ--------D-----ITPQKTVMDKFTRIEGDYKAIVQ 753 (1117)
Q Consensus 704 ~~~v~v~~~pi~d~-~G~v~gv~~v~~--------D-----ITerK~aE~~L~~se~~l~~i~~ 753 (1117)
++|+..+..+++|. ++++..++++.+ | +++++..+.++++.+++++.++-
T Consensus 251 ~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (317)
T 4dj3_A 251 YVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLL 314 (317)
T ss_dssp EEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHHTT
T ss_pred EEEEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHHhc
Confidence 99999999999986 567777888777 4 55677788889999988887764
No 150
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.69 E-value=1.8e-07 Score=107.33 Aligned_cols=205 Identities=11% Similarity=0.043 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHH
Q 001235 202 KLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFL 281 (1117)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l 281 (1117)
+.+.+....| + +.|++++++.+++.+++++++||+.||.+++|+. +.++...... ...-+.++|...=+ ....
T Consensus 14 ~~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~g~-~~~~~~~~~~~~g~--~g~~ 86 (368)
T 1mc0_A 14 RKILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGDK-VLGEEVSFPLTMGR--LGQV 86 (368)
T ss_dssp HHHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETTE-EEEEEEEEESSSSS--HHHH
T ss_pred HHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecCCC-ccccceeeccccCH--HHHH
Confidence 3445566666 5 6799999999999999999999999999998864 5555544321 22223445533211 2455
Q ss_pred HHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccc
Q 001235 282 FMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRL 361 (1117)
Q Consensus 282 ~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~l 361 (1117)
+..++.-.|+|+...| | ++......++++|.|++||+.+ .+|++
T Consensus 87 ~~~~~~~~i~d~~~~~--------------------~----~~~~~~~~~~~~s~l~vPl~~~------------~~~~~ 130 (368)
T 1mc0_A 87 VEDKQCIQLKDLTSDD--------------------V----QQLQNMLGCELQAMLCVPVISR------------ATDQV 130 (368)
T ss_dssp HHHCCCEEGGGSCHHH--------------------H----HHHHHHHCSCCCCEEEEEEECT------------TTCSE
T ss_pred HhcCCeEEeccccccc--------------------c----cccccccCcccceEEEEEeecC------------CCCcE
Confidence 7777777777765443 1 4556778889999999999853 23899
Q ss_pred eeeEEeeccCC-CCCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhc-CCCcccccC-Ccchhh
Q 001235 362 WGLVVCHNTTP-RFVPFPLRYACEFLAQVFAIHVNKELELEY-QILEKNILRTQTLLCDMLMR-DAPLGIVTQ-SPNIMD 437 (1117)
Q Consensus 362 WGl~~~hh~~p-~~~~~~~r~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~ 437 (1117)
||.|.++++.+ +.++......++.++..++..|......+. +..++.......+...+... .....+... ...+..
T Consensus 131 ~Gvl~l~~~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~ 210 (368)
T 1mc0_A 131 VALACAFNKLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARN 210 (368)
T ss_dssp EEEEEEEEESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 99999888765 568888899999999999988864322221 11111111122222122111 122222221 345677
Q ss_pred hccCCEEEEEEC
Q 001235 438 LVKCDGAALLYK 449 (1117)
Q Consensus 438 l~~~~g~a~~~~ 449 (1117)
+++|+.++|+.-
T Consensus 211 ~~~~~~~~i~l~ 222 (368)
T 1mc0_A 211 LSNAEICSVFLL 222 (368)
T ss_dssp HHTEEEEEEEEE
T ss_pred HhcccEEEEEEE
Confidence 889998887654
No 151
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.67 E-value=4.3e-09 Score=99.86 Aligned_cols=112 Identities=8% Similarity=0.056 Sum_probs=78.5
Q ss_pred HhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHH
Q 001235 741 FTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIV 820 (1117)
Q Consensus 741 L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~ 820 (1117)
+......++.+++++++ +|+++|.+|+|+++|+++++++|+++++++|+++.. +++ +.....+...
T Consensus 7 ~~~~~~~~~~il~~~~~---~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~-~~~----------~~~~~~~~~~ 72 (118)
T 3fg8_A 7 HHHHSSGRENLYFQGGL---GFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTE-VLP----------ETQGSYFDAL 72 (118)
T ss_dssp ------CCCCSSSCTTC---EEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHH-HCG----------GGTTSHHHHH
T ss_pred cccccchHHHHHhhCCc---eEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHH-HcC----------ccchHHHHHH
Confidence 44556677889999998 899999999999999999999999999999998643 332 1222234455
Q ss_pred HHHHhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHH
Q 001235 821 LNKAMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHE 874 (1117)
Q Consensus 821 l~~~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITer 874 (1117)
+.+++..+.+...++....++| .|+.++..|..+ |++++++|||+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 73 CRKVLATGREQQTRVDSLYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp HHHHHHHCCCEEEEEECSSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred HHHHHHcCCceEEEEEEEcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 6666666666665433333466 567788888754 378889999964
No 152
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.67 E-value=1.8e-08 Score=104.25 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEE
Q 001235 613 AVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFE 692 (1117)
Q Consensus 613 ~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~ 692 (1117)
+...+++.+++++++|++++|.+|+|+++|++++++||++.++++|+++.+++++.... ..+..+........
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 149 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFL-------RWLESEPQDSHNEH 149 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHH-------HHHHTCCCSCEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHH-------HHHhcCCCCCcceE
Confidence 34567889999999999999999999999999999999999999999999988765432 22222221111222
Q ss_pred EEeeccccCCceEEEEEEEEEeecCCCC----EEEEEEEEEccchhhh
Q 001235 693 IKTHGSKINDDPITLIVNACASRDLHDN----VVGVCFVAQDITPQKT 736 (1117)
Q Consensus 693 ~~~~~~~~dG~~~~v~v~~~pi~d~~G~----v~gv~~v~~DITerK~ 736 (1117)
+.. +| .++.++..|+++.+|+ +.|++++++|||++++
T Consensus 150 ~~~-----~g--~~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 150 VVI-----NG--QNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEE-----TT--EEEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred EEE-----CC--eEEEEEEEEEEecCCCCcceEEeEEEEEeccchhcC
Confidence 221 34 3567888999886666 8899999999999764
No 153
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.65 E-value=2.1e-07 Score=81.96 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=71.0
Q ss_pred cCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCCce
Q 001235 625 ATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDP 704 (1117)
Q Consensus 625 a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG~~ 704 (1117)
++++++++|.+|+|+++|+++++++|++.++++|+++.++ +.... ....+...+..+... ++.. .+++.
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~--~~~~------~~~~~ 69 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDFEE-IGSVAESVFENKEPV--FLNF------YKFGE 69 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTCHH-HHHHHHHHHHHTCCE--EEEE------EEETT
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cchHH-HHHHHHHHhccCCeE--EEEE------EcCCc
Confidence 4789999999999999999999999999999999999988 33332 333444444433322 2222 13556
Q ss_pred EEEEEEEEEeecCCCC-EEEEEEEEEc
Q 001235 705 ITLIVNACASRDLHDN-VVGVCFVAQD 730 (1117)
Q Consensus 705 ~~v~v~~~pi~d~~G~-v~gv~~v~~D 730 (1117)
+|+.++..|+.+.+|. +.|++++++|
T Consensus 70 ~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 70 RYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 8999999999998665 6899998887
No 154
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.65 E-value=1.6e-06 Score=108.50 Aligned_cols=205 Identities=12% Similarity=0.060 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEec-cCCCCCccCCcCCCCCchHHH
Q 001235 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEIT-KSGLEPYLGLHYPATDIPQAA 278 (1117)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~-~~~~~~~lg~~~p~~dip~~~ 278 (1117)
..+.+.+++..|. +.+++++++++++.+++++|+||+.||.|++|.. +.+.... ...++. ..++|-. --.
T Consensus 13 ~~~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~-~l~~~~~~g~~~~~--~~~~p~~---Gi~ 83 (691)
T 3ibj_A 13 RDRKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNL-QLSCKVIGDKVLGE--EVSFPLT---GCL 83 (691)
T ss_dssp HHHHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSS-EEEEEEETTEEEEE--EEEEECC---SSS
T ss_pred HHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCC-eEEEEecCCCcccc--ceecCCc---cHH
Confidence 3345556666665 4699999999999999999999999999999854 4433222 211221 1234432 123
Q ss_pred HHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCccccc
Q 001235 279 RFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKR 358 (1117)
Q Consensus 279 r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~ 358 (1117)
...+..++.-.|+|+...| ..+..+....+++|.|++||+.+ .+
T Consensus 84 g~v~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~------------~~ 127 (691)
T 3ibj_A 84 GQVVEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISR------------AT 127 (691)
T ss_dssp HHHHHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECS------------SS
T ss_pred HHHHHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcC------------CC
Confidence 3455566665666655332 23566778888999999999853 23
Q ss_pred ccceeeEEeeccC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh-cCCCcccccC-Ccc
Q 001235 359 KRLWGLVVCHNTT-PRFVPFPLRYACEFLAQVFAIHVNKELELEYQILEKN-ILRTQTLLCDMLM-RDAPLGIVTQ-SPN 434 (1117)
Q Consensus 359 ~~lWGl~~~hh~~-p~~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~-~~~ 434 (1117)
|++||.|..+++. ++.++.+....++.++..++..|......+...++++ ......+...+.. ......+... ...
T Consensus 128 g~viGvL~l~~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~ 207 (691)
T 3ibj_A 128 DQVVALACAFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITE 207 (691)
T ss_dssp CSEEEEEEEESBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHH
T ss_pred CcEEEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8999999988774 5678888888888888888887754322222222211 1111112122222 1122233222 345
Q ss_pred hhhhccCCEEEEEEC
Q 001235 435 IMDLVKCDGAALLYK 449 (1117)
Q Consensus 435 ~~~l~~~~g~a~~~~ 449 (1117)
+..+++||.++|+.-
T Consensus 208 ~~~~l~ad~~~i~L~ 222 (691)
T 3ibj_A 208 ARNLSNAEICSVFLL 222 (691)
T ss_dssp HHHHHTEEEEEEEEE
T ss_pred HHHHhCCCeEEEEEE
Confidence 677889999888654
No 155
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.60 E-value=6.6e-08 Score=90.32 Aligned_cols=105 Identities=12% Similarity=0.023 Sum_probs=78.7
Q ss_pred HHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCC
Q 001235 749 KAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQ 828 (1117)
Q Consensus 749 ~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~ 828 (1117)
..+++++++ +|+++|.+|+|+++|+++++++|++.++++|+++.. +++... . +...+.+++..+
T Consensus 10 ~~il~~~~~---~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~-~~~~~~---------~---~~~~~~~~~~~~ 73 (115)
T 3b33_A 10 SAILNNMVT---ATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQ-LIQHAS---------L---DLALLTQPLQSG 73 (115)
T ss_dssp HHHHHHCSS---EEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHH-HCSEEE---------C---CTHHHHHHHHHC
T ss_pred HHHHhhcCc---eEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHH-HhCccc---------h---hhHHHHHHHHcC
Confidence 458899988 899999999999999999999999999999998643 332110 0 111233334333
Q ss_pred CC-ceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 829 DP-EKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 829 ~~-~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
.. ...++.+. ++|+.+|+.++..|+.+ +|. .+++.+++||+
T Consensus 74 ~~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 74 QSITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred CcccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 33 45666666 89999999999999998 786 68889999874
No 156
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.59 E-value=2.1e-07 Score=92.08 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=93.4
Q ss_pred CCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCC-ccCCcCCCCCchHHHHHHHHhCCeEEEeccC
Q 001235 216 SGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEP-YLGLHYPATDIPQAARFLFMKNKVRMIVDCR 294 (1117)
Q Consensus 216 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~-~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~ 294 (1117)
|.|++++++.+++.+.+++|+|++.||-+++++.-.+++- .++++ +... ..... | ....+..++.-+|.|+.
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~---~g~~~~~~~~-~~~~~-~--~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAA---RGLSEHYQRA-VDGHS-P--WITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEE---ESCCHHHHHH-TCBCC-S--CC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEee---CCCCHHHHhh-ccCCC-c--hhhhhhcCCcEEEeChh
Confidence 3589999999999999999999999999999873222221 11111 1100 00000 0 00111222222333332
Q ss_pred CcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCC
Q 001235 295 ARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRF 374 (1117)
Q Consensus 295 ~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~ 374 (1117)
.. ...+.+.+.+...|+++.+++||+.+ |+++|.|..++..|+.
T Consensus 74 ~~----------------------~~~~~~~~~~~~~g~~s~~~vPl~~~--------------~~~iGvl~~~~~~~~~ 117 (151)
T 3hcy_A 74 DA----------------------EFSRELKESIVGEGIAALGFFPLVTE--------------GRLIGKFMTYYDRPHR 117 (151)
T ss_dssp GS----------------------CCCHHHHHHHHHHTCCEEEEEEEESS--------------SSEEEEEEEEESSCCC
T ss_pred hC----------------------cccchhHHHHHhcCchheEEeceEEC--------------CEEEEEEEEecCCCCC
Confidence 22 12356677889999999999999876 9999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHH
Q 001235 375 VPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 375 ~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
++...+..++.++.+++..|..
T Consensus 118 f~~~~~~ll~~~a~~~a~ai~~ 139 (151)
T 3hcy_A 118 FADSEIGMALTIARQLGFSIQR 139 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888754
No 157
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.57 E-value=2.9e-07 Score=104.15 Aligned_cols=106 Identities=8% Similarity=0.049 Sum_probs=90.4
Q ss_pred CccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc-----eeeEEEEEeecccc
Q 001235 626 TVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE-----QNIQFEIKTHGSKI 700 (1117)
Q Consensus 626 ~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~-----~~~e~~~~~~~~~~ 700 (1117)
.+.++..|.+|.++++|+++..++||+++|++|+++.+++||+|.+.+...+..+++.+.. ...++++. ++
T Consensus 154 ~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~----~k 229 (339)
T 3rty_A 154 PKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFL----IQ 229 (339)
T ss_dssp CEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEE----CT
T ss_pred ceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEE----cc
Confidence 4578889999999999999999999999999999999999999999999888888865443 23456655 78
Q ss_pred CCceEEEEEEEEEeecCC-CCEEEEEEEEEccchhh
Q 001235 701 NDDPITLIVNACASRDLH-DNVVGVCFVAQDITPQK 735 (1117)
Q Consensus 701 dG~~~~v~v~~~pi~d~~-G~v~gv~~v~~DITerK 735 (1117)
||+++|+..+..+++|+. +++..++++.+.|++..
T Consensus 230 dG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~ 265 (339)
T 3rty_A 230 NGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPK 265 (339)
T ss_dssp TSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCS
T ss_pred CCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCC
Confidence 999999999999999865 67778888888777753
No 158
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.52 E-value=1.6e-06 Score=87.86 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCc--cCCcCCCCCchHHHHHHHHhCCeEEEecc
Q 001235 216 SGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPY--LGLHYPATDIPQAARFLFMKNKVRMIVDC 293 (1117)
Q Consensus 216 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~--lg~~~p~~dip~~~r~l~~~~~~r~i~d~ 293 (1117)
..+++++++.++++++++++||++-+|-+++ |+.+.++..+.-... .|..+|..+=+ ...-+..++.-+ .|.
T Consensus 3 ~~sldevL~~v~~~l~~~~~~d~~~l~L~~~---~~L~l~a~~~~~~~~~~~~~~ip~~~s~--~~~v~~~~~~~v-~~~ 76 (165)
T 3o5y_A 3 AMSLDDIINNMIDKLKLLVHFDRISFLLLAN---ETLKLSHVYPKGSHSLDIGSTIPKEQSL--YWSALDQRQTIF-RSL 76 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCSEEEEEEEET---TEEEEEEEESTTCCSSCTTCEECSTTCH--HHHHHHHTSCEE-EES
T ss_pred CCCHHHHHHHHHHHHHHhcCcceEEEEEEEC---CEEEEEEEecCCccccccccccCCccCH--HHHHHHhCCeEE-EcC
Confidence 3589999999999999999999999999975 345555544433333 56677764322 233455555444 443
Q ss_pred CCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCC
Q 001235 294 RARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPR 373 (1117)
Q Consensus 294 ~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~ 373 (1117)
...+- .-++..|+...|++|.|++||+.+ |++||.|...+..|+
T Consensus 77 ~~~~~----------------------~~~~~~~~~~~~~~S~l~vPL~~~--------------~~~iGvl~l~~~~~~ 120 (165)
T 3o5y_A 77 TDTQD----------------------NFYEKQYLAILDLKSILVIPIYSK--------------NKRVGVLSIGRKQQI 120 (165)
T ss_dssp CCTTC----------------------CCTTHHHHHTTTCCEEEEEEEECS--------------SCEEEEEEEEESSCC
T ss_pred ccccc----------------------ccccchHHHhhCCCEEEEeCeeEC--------------CEEEEEEEEEeCCCC
Confidence 32210 112346899999999999999987 999999999998898
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 001235 374 FVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 374 ~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
..+.+....++.|+..+++.|..
T Consensus 121 ~f~~~d~~~l~~la~~~aiai~n 143 (165)
T 3o5y_A 121 DWSLDDLAFLEQLTDHLAVSIEN 143 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88989999999999999988853
No 159
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.51 E-value=3.2e-07 Score=87.48 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=74.4
Q ss_pred HHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCcccccc-ccCcHHHHHHHHHHHHcCCcceeeEEEEEeec
Q 001235 619 VRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLV-EDSSIDTVKRMLYLALQGQEEQNIQFEIKTHG 697 (1117)
Q Consensus 619 ~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv-~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~ 697 (1117)
..++++++.|++++|.+|+|++||.+++++.||++++++|+++.+.+ +......+...+.+.+..+. ....+...
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v--- 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT--- 95 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE---
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE---
Confidence 45799999999999999999999999999999999999999998754 44455555556666555444 22233322
Q ss_pred cccCCceEEEEEEEEEeecCCCCEEEEEE
Q 001235 698 SKINDDPITLIVNACASRDLHDNVVGVCF 726 (1117)
Q Consensus 698 ~~~dG~~~~v~v~~~pi~d~~G~v~gv~~ 726 (1117)
.+++|.++ .++..+.++++|...+++.
T Consensus 96 ~~~~~~p~--~v~i~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 96 FDYQMTPT--KVKVHMKKALSGDSYWVFV 122 (125)
T ss_dssp ECTTSCCE--EEEEEEEECSSSSEEEEEE
T ss_pred EcCCCCEE--EEEEEEEEcCCCCEEEEEE
Confidence 14567754 4555566778888887754
No 160
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.49 E-value=5.5e-08 Score=91.00 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=69.1
Q ss_pred CeeeeCCC-CceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcC-CCC---ceEeE
Q 001235 761 PIFGSDEF-GWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSG-QDP---EKVPF 835 (1117)
Q Consensus 761 ~I~~~D~~-g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g-~~~---~~~e~ 835 (1117)
+|+++|.+ |+|+++|+++++++||+++|++|+++...+.+ +..............+ +.. ...++
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLR-----------SDSDVVEALSEEHMEADGHAAVVFGTVV 78 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSC-----------TTTHHHHHTTSSTTSSSSCSSCCCSSSE
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCc-----------chhHHHHHHHHHhhccCCcceeccCcEE
Confidence 89999999 99999999999999999999999986433222 1111111111111221 111 14567
Q ss_pred EEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 836 GFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 836 ~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
.+.++||+.+|+.++.+|+.+.++. +++++++|++
T Consensus 79 ~~~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 79 DIISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp EECCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEEecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 7889999999999999999876553 4677777764
No 161
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.49 E-value=6e-08 Score=90.18 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=80.2
Q ss_pred hhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCC---ChhhHhhcchhhhhcCCchhhhhccChhHH
Q 001235 738 MDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGW---KREEVIDKLLLAEVFGTNMACCRLKNQEAF 814 (1117)
Q Consensus 738 E~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~---~~eEliGk~l~~ei~~~~~~~~~l~~~d~~ 814 (1117)
.+++++.++.++.+++++++ +|+++|.+|+|+++|+++++++|+ +.++++|+.+... + .+..
T Consensus 7 ~~~l~~~~~~~~~il~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~-~----------~~~~- 71 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKE---GVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSW-S----------QVVD- 71 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCC---CCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCC-S----------CTHH-
T ss_pred HHHHHHHHHHHHHHHhhccc---cEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccc-c----------Cchh-
Confidence 45677788889999999999 899999999999999999999998 7899999875322 2 1111
Q ss_pred HHHHHHHHHHhcCCCCc-eEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 815 VNLGIVLNKAMSGQDPE-KVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 815 ~~~~~~l~~~l~g~~~~-~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
+...+.++... ..+ ...+| .|+.++..|+.+ +|++.|++++++|||
T Consensus 72 ------~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 72 ------VSEVLRDGTPRRDEE---ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp ------HHHHHHTTCCCCCCC---EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ------HHHHhccCceeccEE---EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 22233333322 222 23455 467888899987 889999999999987
No 162
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.49 E-value=2.6e-07 Score=88.26 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCcccccc-ccCcHHHHHHHHHHHHcCCcceeeEEEEEeecc
Q 001235 620 RLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLV-EDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGS 698 (1117)
Q Consensus 620 ~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv-~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~ 698 (1117)
.++++++.|++++|.+|+|++||.+++++.||++++++|+++.+.+ +......+...+.+.+..+. ....+....
T Consensus 26 ~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~--- 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVF--- 101 (129)
T ss_dssp TTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEE---
T ss_pred HHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEE---
Confidence 3699999999999999999999999999999999999999998754 44455555666666665444 222332221
Q ss_pred ccCCceEEEEEEEEEeecCCCCEEEEEE
Q 001235 699 KINDDPITLIVNACASRDLHDNVVGVCF 726 (1117)
Q Consensus 699 ~~dG~~~~v~v~~~pi~d~~G~v~gv~~ 726 (1117)
+++|. ++.++..+.++++|...+++.
T Consensus 102 ~~~~~--p~~v~i~l~~~~~~~~~~i~v 127 (129)
T 1mzu_A 102 DFQMA--PVRVQIRMQNAGVPDRYWIFV 127 (129)
T ss_dssp ECSSC--EEEEEEEEEECSSTTEEEEEE
T ss_pred cCCCC--EEEEEEEEEEcCCCCEEEEEE
Confidence 34566 555556667788888887654
No 163
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.47 E-value=2.4e-06 Score=97.96 Aligned_cols=149 Identities=13% Similarity=0.160 Sum_probs=110.9
Q ss_pred HHHHHHhcCCC-CcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCC--CCccCCcCCCCCchHHHHHHH
Q 001235 206 KAITRLQSLPS-GSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGL--EPYLGLHYPATDIPQAARFLF 282 (1117)
Q Consensus 206 ~~~~~~~~~~~-~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~--~~~lg~~~p~~dip~~~r~l~ 282 (1117)
.....|.+ + .+++++++.+++.+++++++||+.||.+++ |+.+..+...++ +...+..+|... .-+...+
T Consensus 185 ~i~~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 257 (368)
T 1mc0_A 185 QVAKNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVA 257 (368)
T ss_dssp HHHHHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHHH
T ss_pred HHHHHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeeeh
Confidence 33444555 4 489999999999999999999999999988 566666554322 345567777542 3456678
Q ss_pred HhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEE-cCCccccCCCcccccccc
Q 001235 283 MKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVV-NDEEEEGDNTLPQKRKRL 361 (1117)
Q Consensus 283 ~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~-~~~~~~~~~~~~~~~~~l 361 (1117)
..++..+|+|+...|- ..++......+.+++.|++||+. + |++
T Consensus 258 ~~~~~~~i~d~~~~~~----------------------~~~~~~~~~~~~~~s~l~vPl~~~~--------------~~~ 301 (368)
T 1mc0_A 258 TTGQILNIPDAYAHPL----------------------FYRGVDDSTGFRTRNILCFPIKNEN--------------QEV 301 (368)
T ss_dssp HHCCCEEESCSTTCTT----------------------CCCTTHHHHTCCCCCEEEEEEECTT--------------SCE
T ss_pred hhCCEEEecCcccCcc----------------------cchhhhhccCCccceEEEEeeECCC--------------CcE
Confidence 8888888998875541 01112223445679999999986 4 899
Q ss_pred eeeEEeeccCCC-CCCchhHHHHHHHHHHHHHHHHHH
Q 001235 362 WGLVVCHNTTPR-FVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 362 WGl~~~hh~~p~-~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
||.|..+++.|+ .++...+..++.++..++..|...
T Consensus 302 iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~na 338 (368)
T 1mc0_A 302 IGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHS 338 (368)
T ss_dssp EEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999875 799999999999999999888643
No 164
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.38 E-value=3.7e-07 Score=105.07 Aligned_cols=114 Identities=10% Similarity=0.030 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHH
Q 001235 745 EGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKA 824 (1117)
Q Consensus 745 e~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~ 824 (1117)
..+++++++++++ ||+++|.+|+|++||++ ++++ ++.++++|+++.. +++ +.... ....+...
T Consensus 238 ~~~l~~IL~~l~d---gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~-~~p----------~~~~~-~~~~l~~~ 300 (369)
T 3cax_A 238 IEELKAIFEALPV---DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQL-CHP----------PKSVY-VVNKILKA 300 (369)
T ss_dssp HHHHHHHHHHSSS---EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTT-SSC----------GGGHH-HHHHHHHH
T ss_pred HHHHHHHHHhCCC---cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHH-HCC----------hhhHH-HHHHHHHH
Confidence 4568899999999 99999999999999999 9999 9999999998642 222 11111 22223333
Q ss_pred hcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHHHHHHHH
Q 001235 825 MSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLASHELQQA 878 (1117)
Q Consensus 825 l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DITerk~~e 878 (1117)
+..+.....++.+ ..+| +++.++..|++|.+|++.|++.+++|||+.++.+
T Consensus 301 l~~g~~~~~~~~~-~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 301 FKEGRKKEATFWL-RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp HHHTSCSCEEEEE-EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCC
T ss_pred HHcCCceEEEEEE-eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHH
Confidence 3333444444444 3456 5788999999999999999999999999877655
No 165
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.37 E-value=5.9e-07 Score=104.53 Aligned_cols=90 Identities=14% Similarity=0.234 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHHHHHHhhccC---CCCeEEEEEEec-ccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCCCCcc
Q 001235 1004 DSIRLQQVLADFLSISINFVP---NGGQLMVSSSLT-KDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTSEEG 1079 (1117)
Q Consensus 1004 D~~~L~qVL~nLl~NAik~~~---~~g~I~I~v~~~-~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~GtG 1079 (1117)
+...+..++.||++||++|+. .+|.|.|++... ++ .+.|+|.|+|+|+|+. ....+.|
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~---------~l~i~V~D~G~g~~~~---------~~~~~~G 355 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG---------NVRASVIDRGQWKDHR---------DGARGRG 355 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS---------EEEEEEEESCBC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC---------EEEEEEEECCCCCCCC---------CCCCCCC
Confidence 346788999999999999983 268899998876 33 7999999999999986 2234679
Q ss_pred ccHHHHHHHHHHcCCEEEEEeeCCeEEEEEEEeccC
Q 001235 1080 ISLLISRKLVKLMNGDVQYLREAGKSTFIVSVELAA 1115 (1117)
Q Consensus 1080 LGL~ivr~iVe~~gG~I~v~s~~g~ttF~i~LPl~~ 1115 (1117)
+||+|++.+++. +.+.+.++++++++++|+..
T Consensus 356 ~GL~lv~~l~~~----~~~~~~~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 356 RGLAMAEALVSE----ARIMHGAGGTTATLTHRLSR 387 (399)
T ss_dssp -CHHHHHTTSSE----EEEEEETTEEEEEEEEECEE
T ss_pred cHHHHHHHHHHh----eeeEECCCcEEEEEEEEcCC
Confidence 999999887764 55777777899999998864
No 166
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.36 E-value=2.4e-06 Score=83.92 Aligned_cols=140 Identities=13% Similarity=-0.023 Sum_probs=98.7
Q ss_pred CCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccC-CcCCCCCchHHHHHHHHhCCeEEEeccC
Q 001235 216 SGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLG-LHYPATDIPQAARFLFMKNKVRMIVDCR 294 (1117)
Q Consensus 216 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg-~~~p~~dip~~~r~l~~~~~~r~i~d~~ 294 (1117)
+.+++++++.+++.+++++++|++.||-+++++.-.+.+-.- .+-+.+-. .++|..+ .-....+..++..+|.|+.
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEG-IDEETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEES-CCHHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEec-CCHHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 458999999999999999999999999999653333333221 11111111 2444322 2345567777777888765
Q ss_pred CcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCC-C
Q 001235 295 ARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTP-R 373 (1117)
Q Consensus 295 ~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p-~ 373 (1117)
..|-- ..... ...|+++.+++||+.+ ++++|.|.+++..+ +
T Consensus 81 ~~~~~------------------~~~~~------~~~~~~s~l~vPl~~~--------------~~~~Gvl~l~~~~~~~ 122 (153)
T 2w3g_A 81 AHPAS------------------IGFPP------YHPPMRTFLGVPVRVR--------------DESFGTLYLTDKTNGQ 122 (153)
T ss_dssp GSTTC------------------CCCCT------TCCCCCCEEEEEEEET--------------TEEEEEEEEEEETTSC
T ss_pred cCchh------------------cCCCC------cCCCCCeEEEeeEEEC--------------CEEEEEEEEeeCCCCC
Confidence 44310 00000 3468899999999987 99999999999988 7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 001235 374 FVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 374 ~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
.++...+..++.++..++..|..
T Consensus 123 ~f~~~~~~~l~~la~~~a~ai~~ 145 (153)
T 2w3g_A 123 PFSDDDEVLVQALAAAAGIAVAN 145 (153)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999888854
No 167
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.66 E-value=6.8e-08 Score=108.13 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=87.8
Q ss_pred HHHHhcCccEEEEeCCCcEEeecHHHHHHcC---CCcccccCCccccccccC---cH--HHHHHHHHHHHcC-CcceeeE
Q 001235 620 RLIETATVPILAVDVDGLVNGWNTKIAELTG---LSVDKAIGKHFLTLVEDS---SI--DTVKRMLYLALQG-QEEQNIQ 690 (1117)
Q Consensus 620 ~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G---~s~eeliG~~~~dlv~~~---~~--~~~~~~l~~~l~g-~~~~~~e 690 (1117)
.+++.+++||+++|.+|+|+++|++++++|| ++ ++++|+++.++++.. .. ..+...+..++.+ +.....+
T Consensus 174 ~~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~e 252 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRME 252 (305)
Confidence 4567999999999999999999999999985 44 789999999887643 11 1223333334444 3221111
Q ss_pred EEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHH
Q 001235 691 FEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAI 751 (1117)
Q Consensus 691 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i 751 (1117)
+. ...+++.++..|+++ +|++.|++.+++|||+.|+.|++|+......+.|
T Consensus 253 --i~-------~~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~IrEI 303 (305)
T 2ykf_A 253 --VD-------AGGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIREI 303 (305)
Confidence 11 124678888999987 5889999999999999999999997766555443
No 168
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.31 E-value=2e-06 Score=96.41 Aligned_cols=106 Identities=12% Similarity=-0.011 Sum_probs=89.2
Q ss_pred CccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCC-cce-eeEEEEEeeccccCCc
Q 001235 626 TVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQ-EEQ-NIQFEIKTHGSKINDD 703 (1117)
Q Consensus 626 ~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~-~~~-~~e~~~~~~~~~~dG~ 703 (1117)
...+...+.+|+++++|+++..++||.++|++|+++.+++||+|.+.+.+....+++++ ... ..++++. ++||+
T Consensus 176 ~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~----~kdG~ 251 (320)
T 4dj2_A 176 RIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFC----ARNGE 251 (320)
T ss_dssp CEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEE----CSSSC
T ss_pred ceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEE----ccCCC
Confidence 34577789999999999999999999999999999999999999999999999988743 332 2355554 78999
Q ss_pred eEEEEEEEEEeecC-CCCEEEEEEEEEccchhh
Q 001235 704 PITLIVNACASRDL-HDNVVGVCFVAQDITPQK 735 (1117)
Q Consensus 704 ~~~v~v~~~pi~d~-~G~v~gv~~v~~DITerK 735 (1117)
++|+..+..++++. .+++..++++.+-|++..
T Consensus 252 ~vwvet~~~~~~np~s~~~e~II~~h~v~~gp~ 284 (320)
T 4dj2_A 252 YVTMDTSWAGFVHPWSRKVAFVLGRHKVRTAPL 284 (320)
T ss_dssp EEEEECEEEEEECTTTCSEEEEEEEEEESSCCS
T ss_pred EEEEEEEEEEEECCCCCCccEEEEEEEEccCCC
Confidence 99999999999986 678888999877777643
No 169
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.29 E-value=2.7e-06 Score=94.97 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=87.2
Q ss_pred cEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcc-ee-eEEEEEeeccccCCceE
Q 001235 628 PILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEE-QN-IQFEIKTHGSKINDDPI 705 (1117)
Q Consensus 628 gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~-~~-~e~~~~~~~~~~dG~~~ 705 (1117)
.+...+.+|+++++|+++..++||.++|++|+++.+++||+|.+.+.+.+..+++++.. .. .++++. ++||+++
T Consensus 167 Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~----~kdG~~v 242 (309)
T 3gdi_A 167 FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFR----TRNGEYI 242 (309)
T ss_dssp EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEE----CTTSCEE
T ss_pred EEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEE----ccCCCEE
Confidence 56778999999999999999999999999999999999999999999999988875433 22 244444 7899999
Q ss_pred EEEEEEEEeecC-CCCEEEEEEEEEccchh
Q 001235 706 TLIVNACASRDL-HDNVVGVCFVAQDITPQ 734 (1117)
Q Consensus 706 ~v~v~~~pi~d~-~G~v~gv~~v~~DITer 734 (1117)
|+..+..++++. ++++..++++.+-++..
T Consensus 243 wvet~~~~~~np~s~~~e~ii~~h~v~~gp 272 (309)
T 3gdi_A 243 TLDTSWSSFINPWSRKISFIIGRHKVRVGP 272 (309)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEEEEECC
T ss_pred EEEEEEEEEECCCCCcccEEEEEEEEccCC
Confidence 999999999886 67888888888777764
No 170
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.28 E-value=8.1e-07 Score=91.58 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHH
Q 001235 743 RIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLN 822 (1117)
Q Consensus 743 ~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~ 822 (1117)
+....++.+++++++ ||+.+|.+|+|+++|+++++++|++.++++|+++.. +++. ... ...+.
T Consensus 77 ~~~~~l~~il~~~~~---gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~-~~~~----------~~~---~~~~~ 139 (190)
T 2jhe_A 77 REHLALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQ-LING----------FNF---LRWLE 139 (190)
T ss_dssp HHHHHHHHHHHHCSS---CEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGG-TSTT----------CCH---HHHHH
T ss_pred HHHHHHHHHHHhCCC---cEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHH-HhCC----------CCH---HHHHh
Confidence 345678999999999 999999999999999999999999999999998643 2221 111 11111
Q ss_pred HHhcCC-CCceEeEEEEecCCcEEEEEEEEeeeeCCCCC----EEEEEeehhHHHHHH
Q 001235 823 KAMSGQ-DPEKVPFGFFARNGKYAECLLCVNKKLDREGA----VTGVFCFLQLASHEL 875 (1117)
Q Consensus 823 ~~l~g~-~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~----v~g~v~i~~DITerk 875 (1117)
.+. .....++.+ +|+ ++.++..|+.+.+|+ +.|++++++|||+.+
T Consensus 140 ---~~~~~~~~~~~~~---~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 140 ---SEPQDSHNEHVVI---NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp ---TCCCSCEEEEEEE---TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred ---cCCCCCcceEEEE---CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 122 223333333 675 466788999876666 889999999999754
No 171
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.21 E-value=2.2e-05 Score=77.94 Aligned_cols=128 Identities=16% Similarity=0.054 Sum_probs=96.8
Q ss_pred cHHHHHHHHHHHHHhhhCCCEEEEEeecCCCC---ceEEEEe-ccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEecc
Q 001235 218 SMERLCDTMIQEVFELTGYDRVMAYKFHEDDH---GEVVSEI-TKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDC 293 (1117)
Q Consensus 218 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~---g~vvaE~-~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~ 293 (1117)
+++++++.+++.+++++|+|+..||-.+++.. |+...++ .....+.+.|..||-.. + -....+..++.-+|+|+
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 45789999999999999999999999987741 4544443 34445667888888543 3 33445667776678886
Q ss_pred CCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeecc-CC
Q 001235 294 RARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNT-TP 372 (1117)
Q Consensus 294 ~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~-~p 372 (1117)
...| |+++.|++||..+ ++.-|.|..++. .|
T Consensus 79 ~~d~----------------------------------~~~s~l~vPL~~~--------------~~~~GvL~l~~~~~~ 110 (149)
T 2vjw_A 79 DGPG----------------------------------LGGPALVLPLRAT--------------DTVAGVLVAVQGSGA 110 (149)
T ss_dssp CTTS----------------------------------CEEEEEEEEEEET--------------TEEEEEEEEEEETTC
T ss_pred ccCC----------------------------------CCCeEEEEEEccC--------------CeEEEEEEEeeCCCC
Confidence 5321 7899999999977 999999999887 78
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH
Q 001235 373 RFVPFPLRYACEFLAQVFAIHVN 395 (1117)
Q Consensus 373 ~~~~~~~r~~~~~l~~~~~~~~~ 395 (1117)
+..+......++.++.+.++.|.
T Consensus 111 ~~f~~~d~~ll~~lA~~aa~al~ 133 (149)
T 2vjw_A 111 RPFTAEQLEMMTGFADQAAVAWQ 133 (149)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877774
No 172
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.20 E-value=2.2e-05 Score=90.99 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEe-ccC
Q 001235 216 SGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIV-DCR 294 (1117)
Q Consensus 216 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~-d~~ 294 (1117)
..+++++++.+++.+++++++||+.||-+++++ |+.......++ .+..+.++|-. ..-+...+..++.-.|+ |+.
T Consensus 212 ~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~-~~l~~~~~~~~-~~~~~~~~~~~--~~~~~~v~~~~~~~~i~~d~~ 287 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELMNADRSTLWLIDRDR-HELWTKITQDN-GSTKELRVPIG--KGFAGIVAASGQKLNIPFDLY 287 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTT-TEEEEEEECSS-SCEEEEEEETT--SHHHHHHHHHCCCEEECSCGG
T ss_pred cCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCC-CEEEEEEecCC-CceeeeeccCC--CchhhHHhccCCeEEeccccc
Confidence 348999999999999999999999999999986 44444443221 12233355543 23455677888888888 876
Q ss_pred CcccccccCCCCCCcccccCCcccCCChhH--HHHHHhcCceeEEEEEEE-EcCCccccCCCcccccccceeeEEeeccC
Q 001235 295 ARHVKVLQDEKLPFDLTLCGSTLRAPHSCH--LQYMENMNSIASLVMAVV-VNDEEEEGDNTLPQKRKRLWGLVVCHNTT 371 (1117)
Q Consensus 295 ~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h--~~yl~n~~v~asl~~~i~-~~~~~~~~~~~~~~~~~~lWGl~~~hh~~ 371 (1117)
..|- ...+ ..-...+++++.|++||+ .+ |++||.|..+++.
T Consensus 288 ~~~~----------------------~~~~~~~~~~~~~~~~s~l~vPl~~~~--------------~~~iGvl~l~~~~ 331 (398)
T 1ykd_A 288 DHPD----------------------SATAKQIDQQNGYRTCSLLCMPVFNGD--------------QELIGVTQLVNKK 331 (398)
T ss_dssp GSTT----------------------CHHHHHHHHHHTCCCCCEEEEEEECSS--------------SCEEEEEEEEEEC
T ss_pred cCcc----------------------cCcccchhhhcCCeeeeEEEEeeecCC--------------CCEEEEEEEEecC
Confidence 5431 1233 222346778999999998 46 9999999999887
Q ss_pred --------------------CCCCCchhHHHHHHHHHHHHHHHHHH
Q 001235 372 --------------------PRFVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 372 --------------------p~~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
|+.++......++.++..+++.|...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~na 377 (398)
T 1ykd_A 332 KTGEFPPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQNA 377 (398)
T ss_dssp CSSCCCCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998888643
No 173
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.20 E-value=3.1e-06 Score=74.27 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=64.2
Q ss_pred CeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCCCceEeEEEEec
Q 001235 761 PIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQDPEKVPFGFFAR 840 (1117)
Q Consensus 761 ~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~~~~~e~~~~~~ 840 (1117)
+|++.|.+|+++++|+++++++|++.++++|+++... +. .. .+...+...+..+... ++.. .
T Consensus 4 ~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~---------~~---~~~~~~~~~~~~~~~~--~~~~--~ 65 (96)
T 3a0s_A 4 AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--PD---------FE---EIGSVAESVFENKEPV--FLNF--Y 65 (96)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT---------CH---HHHHHHHHHHHHTCCE--EEEE--E
T ss_pred eEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc---------hH---HHHHHHHHHhccCCeE--EEEE--E
Confidence 8999999999999999999999999999999986422 11 11 1222233333333333 2322 2
Q ss_pred CCcEEEEEEEEeeeeCCCCC-EEEEEeehhH
Q 001235 841 NGKYAECLLCVNKKLDREGA-VTGVFCFLQL 870 (1117)
Q Consensus 841 dG~~~~v~~~~~pi~d~~G~-v~g~v~i~~D 870 (1117)
+|..+|+.++..|+.+.+|. +.|++++++|
T Consensus 66 ~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 66 KFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cCCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 44457899999999988665 6788888765
No 174
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.16 E-value=4.5e-06 Score=79.66 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=70.0
Q ss_pred HHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCCC
Q 001235 750 AIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQD 829 (1117)
Q Consensus 750 ~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~~ 829 (1117)
.++++++. ||+++|.+|+|++||.++++++||++++++|+.++..+.+-. ....+...+.+.+..+.
T Consensus 26 ~~ld~l~~---GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~----------~~~~f~grf~~~~~~G~ 92 (129)
T 1mzu_A 26 AEFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCT----------NIPAFSGRFMDGVTSGT 92 (129)
T ss_dssp TTGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGG----------CSTTTHHHHHHHHHTSC
T ss_pred HHHhccCc---eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchh----------cccHHHHHHHHHHhcCc
Confidence 35788887 999999999999999999999999999999999765443211 11123334444444443
Q ss_pred CceEeEEEE-ecCCcEEEEEEEEeeeeCCCCCEEEEE
Q 001235 830 PEKVPFGFF-ARNGKYAECLLCVNKKLDREGAVTGVF 865 (1117)
Q Consensus 830 ~~~~e~~~~-~~dG~~~~v~~~~~pi~d~~G~v~g~v 865 (1117)
....+.+. +++|+ ++.+++....+.+|...+++
T Consensus 93 -l~~~~~yv~~~~~~--p~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 93 -LDARFDFVFDFQMA--PVRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp -CEEEEEEEEECSSC--EEEEEEEEEECSSTTEEEEE
T ss_pred -eeEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 44445444 88998 45555555667888887665
No 175
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.16 E-value=5.7e-06 Score=78.80 Aligned_cols=102 Identities=17% Similarity=0.120 Sum_probs=71.0
Q ss_pred HHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHHHhcCC
Q 001235 749 KAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNKAMSGQ 828 (1117)
Q Consensus 749 ~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~~l~g~ 828 (1117)
..++++++. |++++|.+|+|++||.++++++||++++++|+.++..+.+- ...+. +...+.+.+..+
T Consensus 20 ~~~ld~l~~---Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~------~~~~~----f~~rf~~~~~~g 86 (125)
T 1nwz_A 20 DGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC------TDSPE----FYGKFKEGVASG 86 (125)
T ss_dssp HHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG------GCSTT----THHHHHHHHHHT
T ss_pred HHHHhccCc---eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch------hcccH----HHHHHHHHHhcC
Confidence 457898888 99999999999999999999999999999999976544331 11122 233334444433
Q ss_pred CCceEeEEEE-ecCCcEEEEEEEEeeeeCCCCCEEEEEe
Q 001235 829 DPEKVPFGFF-ARNGKYAECLLCVNKKLDREGAVTGVFC 866 (1117)
Q Consensus 829 ~~~~~e~~~~-~~dG~~~~v~~~~~pi~d~~G~v~g~v~ 866 (1117)
. ....+.+. +++|+ ++.+++....+.+|...+++.
T Consensus 87 ~-l~~~~~~v~~~~~~--p~~v~i~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 87 N-LNTMFEYTFDYQMT--PTKVKVHMKKALSGDSYWVFV 122 (125)
T ss_dssp C-CEEEEEEEECTTSC--CEEEEEEEEECSSSSEEEEEE
T ss_pred c-eeEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEEE
Confidence 3 44445444 89999 455555556678888876653
No 176
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.07 E-value=3.3e-05 Score=79.76 Aligned_cols=141 Identities=13% Similarity=0.064 Sum_probs=81.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhccccccccCcccceeEEeeHHHHHHHH
Q 001235 894 KALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDSDLDSIIDGYLDLEMVEFTLNEVLVAS 973 (1117)
Q Consensus 894 ~~la~isHEIrnPL~~I~~~~~LL~~~~l~~~~~~~l~~i~~~~~~l~~ii~dLd~skie~g~~~l~~~~~~L~~li~~v 973 (1117)
..++..+||..|-|+.|.|++++=+ .++..+++..+....+.... +.++. ...+...
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~~~------~~~i~-------------~P~la~l 79 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESK------LSNLK-------------TPHLAFD 79 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHH------HHTTT-------------CHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHH------HHhCC-------------CHHHHHH
Confidence 3477789999999999999988643 35667777776554444433 12211 1223333
Q ss_pred HHHHHhhhcccCcEE-EEeecCCCcceeEEecHHHHHHHHHHHHHHHhhc--cC-CCCeEEEEEEec--cccccccccee
Q 001235 974 ISQVMMKSNAKGIRI-VNETAEQIMSETLYGDSIRLQQVLADFLSISINF--VP-NGGQLMVSSSLT--KDQLGQSVHLA 1047 (1117)
Q Consensus 974 ~~~~~~~~~~~~i~i-~~~~~~~~~~~~v~~D~~~L~qVL~nLl~NAik~--~~-~~g~I~I~v~~~--~~~~~~~~~~~ 1047 (1117)
+-.-...+++.++++ .++.+..++ ..+..+..++ +.+.||+.. .+ ..+.|.|++... ++
T Consensus 80 Ll~K~~~a~e~~i~lev~~~~s~l~-----~~~~~lgnLi-~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~--------- 144 (192)
T 1ixm_A 80 FLTFNWKTHYMTLEYEVLGEIKDLS-----AYDQKLAKLM-RKLFHLFDQAVSRESENHLTVSLQTDHPDR--------- 144 (192)
T ss_dssp HHHGGGSCCSSEEEEEEESSCCCCT-----TTHHHHHHHH-HHHHHHHHHHBCTTSCCEEEEEEECCCSSS---------
T ss_pred HHHHHHHhccCCeEEEEecCccccC-----CCcHHHHHHH-HHHHHHHHhhhccCCCCeEEEEEEEecCCC---------
Confidence 333333444444545 333334332 2344443333 233445543 12 367899988776 44
Q ss_pred EEEEEEeecCCCCChhhhhhccCCC
Q 001235 1048 YLELRITHAGGGIPEPLLDQMFGSE 1072 (1117)
Q Consensus 1048 ~l~i~V~D~G~GI~~e~~~~iFe~f 1072 (1117)
.+.|.|.|+|++|+++.++++|++.
T Consensus 145 ~l~i~V~d~G~~i~~e~~~~if~~~ 169 (192)
T 1ixm_A 145 QLILYLDFHGAFADPSAFDDIRQNG 169 (192)
T ss_dssp SCEEEEEEESCBSCGGGCC------
T ss_pred EEEEEEEeCCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999853
No 177
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.00 E-value=1.7e-05 Score=89.09 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCCC----------
Q 001235 1007 RLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTS---------- 1076 (1117)
Q Consensus 1007 ~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~---------- 1076 (1117)
++.+++.||+.||+++. .+.|.|.+.. ++ ...|+|.|||+|||++.++++|++|+++|
T Consensus 28 ~~~~vv~eLv~NAidA~--a~~I~I~i~~-~~---------~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i 95 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK--STSIQVIVKE-GG---------LKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASI 95 (348)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEEG-GG---------TSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC------
T ss_pred CHHHHHHHHHHHHHHcC--CCEEEEEEEe-CC---------EEEEEEEECCcCcChHHhhhhhccccccccCcchhhhcc
Confidence 36699999999999996 4788888752 21 24688999999999999999999986554
Q ss_pred ---C-ccccHHHHHHHHHHcCCEEEEEee
Q 001235 1077 ---E-EGISLLISRKLVKLMNGDVQYLRE 1101 (1117)
Q Consensus 1077 ---G-tGLGL~ivr~iVe~~gG~I~v~s~ 1101 (1117)
| .|.||+-+-.+ . ++.+.+.
T Consensus 96 ~s~GfrGeaL~Si~av----s-~l~v~sr 119 (348)
T 3na3_A 96 STYGFRGEALASISHV----A-HVTITTK 119 (348)
T ss_dssp ---CCTTCHHHHHHHS----S-EEEEEEE
T ss_pred ccCCcCChHHHHhhcc----c-EEEEEEE
Confidence 2 27788766332 2 5666654
No 178
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=97.97 E-value=6.9e-05 Score=93.60 Aligned_cols=141 Identities=12% Similarity=0.154 Sum_probs=106.6
Q ss_pred CcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCC--CCccCCcCCCCCchHHHHHHHHhCCeEEEeccC
Q 001235 217 GSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGL--EPYLGLHYPATDIPQAARFLFMKNKVRMIVDCR 294 (1117)
Q Consensus 217 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~--~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~ 294 (1117)
.+++++++.+++++++++|+||+.||-+++ |+.+..+...+. +...+..+|... --+...+..++.-.|+|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 489999999999999999999999999998 788887765543 234556666543 3455678888888899887
Q ss_pred CcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCC-
Q 001235 295 ARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPR- 373 (1117)
Q Consensus 295 ~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~- 373 (1117)
..|- -++...-...+++++-|++||+.+ +|++||.|..+++.+.
T Consensus 270 ~d~~----------------------~~~~~~~~~g~~~rS~L~vPL~~~-------------~g~viGVL~l~~~~~~~ 314 (691)
T 3ibj_A 270 AHPL----------------------FYRGVDDSTGFRTRNILCFPIKNE-------------NQEVIGVAELVNKINGP 314 (691)
T ss_dssp TSTT----------------------C------CCSCCCCCEEEEECCCS-------------SSCCCEEEEEEEESSSS
T ss_pred cCcc----------------------ccchhhcccCCeeeeEEEEeEECC-------------CCCEEEEEEEEECCCCC
Confidence 6541 011222233466899999999753 2699999999888765
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH
Q 001235 374 FVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 374 ~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
.++......++.++..+|+.|...
T Consensus 315 ~f~~~d~~ll~~lA~~~aiAIena 338 (691)
T 3ibj_A 315 WFSKFDEDLATAFSIYCGISIAHS 338 (691)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998654
No 179
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=97.97 E-value=1.5e-05 Score=90.88 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCCC----------
Q 001235 1007 RLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTS---------- 1076 (1117)
Q Consensus 1007 ~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~---------- 1076 (1117)
++.+++.||+.||+++.. +.|.|.+... + ...|+|.|||+|||++.++++|++|++.+
T Consensus 34 ~~~~vl~eLv~NAiDA~a--~~I~I~i~~~-~---------~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i 101 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA--TNIDLKLKDY-G---------VDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQV 101 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC--SEEEEEEEGG-G---------TSEEEEEECSCCCCGGGSGGGGC----------CCTTCS
T ss_pred hHHHHHHHHHHHHHHCCC--CEEEEEEEeC-C---------cEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcc
Confidence 367999999999999874 6788877542 1 24688999999999999999999985332
Q ss_pred ---Cc-cccHHHHHHH
Q 001235 1077 ---EE-GISLLISRKL 1088 (1117)
Q Consensus 1077 ---Gt-GLGL~ivr~i 1088 (1117)
|. |+||+.+..+
T Consensus 102 ~s~G~rG~gl~si~~v 117 (365)
T 1h7s_A 102 ETFGFRGEALSSLCAL 117 (365)
T ss_dssp EEESSSSSHHHHHHHH
T ss_pred cccCCCCchhhhhhhh
Confidence 33 8899887543
No 180
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=97.94 E-value=9.8e-05 Score=75.54 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhhhCCCEEEEEeecCCCC-ceEEEEec--cCC--C-----CCccCCcCC
Q 001235 202 KLAAKAITRLQSLPSG-SMERLCDTMIQEVFELTGYDRVMAYKFHEDDH-GEVVSEIT--KSG--L-----EPYLGLHYP 270 (1117)
Q Consensus 202 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~-g~vvaE~~--~~~--~-----~~~lg~~~p 270 (1117)
..+.++...|.+ +. +++++++.+++.+++++|+||..||=++++.. ++.++... ..+ + .+..+.++|
T Consensus 7 ~~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (180)
T 3dba_A 7 NILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVFP 84 (180)
T ss_dssp HHHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEEC
T ss_pred HHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceeee
Confidence 334455555666 77 99999999999999999999999999998754 56665432 122 2 234455666
Q ss_pred CCCchHHHHHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCcccc
Q 001235 271 ATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEG 350 (1117)
Q Consensus 271 ~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~ 350 (1117)
... --+...+..++.-+|+|+...|- ..+ ........++++-|++||+.+
T Consensus 85 ~~~--gi~g~v~~tg~~v~i~d~~~d~~---------------------f~~-~~~~~~~~~~~S~L~vPl~~~------ 134 (180)
T 3dba_A 85 LDI--GIAGWVAHTKKFFNIPDVKKNNH---------------------FSD-YLDKKTGYTTVNMMAIPITQG------ 134 (180)
T ss_dssp TTS--SHHHHHHHHTCCEEESCGGGCTT---------------------CCC-HHHHHHCCCCCCEEEEEEEET------
T ss_pred CCC--CHHHHHHHhCCEEEecCCCCCcc---------------------cCh-hhccccCccccEEEEEEeccC------
Confidence 442 23566777788888888765541 011 122234567899999999987
Q ss_pred CCCcccccccceeeEEeeccCCC-CCCchhHHHHHHHHHHHHHHH
Q 001235 351 DNTLPQKRKRLWGLVVCHNTTPR-FVPFPLRYACEFLAQVFAIHV 394 (1117)
Q Consensus 351 ~~~~~~~~~~lWGl~~~hh~~p~-~~~~~~r~~~~~l~~~~~~~~ 394 (1117)
+++.|.|...+..+. ..+.......+.++.+.|+.|
T Consensus 135 --------~~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~~i 171 (180)
T 3dba_A 135 --------KEVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVL 171 (180)
T ss_dssp --------TEEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred --------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999887654 677777777888888777765
No 181
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.91 E-value=2.2e-05 Score=88.61 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCC-----------
Q 001235 1007 RLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDT----------- 1075 (1117)
Q Consensus 1007 ~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~----------- 1075 (1117)
++.+++.||+.||+++.. ..|.|.+...+ ...|+|.|||+||+++.+..+|++|++.
T Consensus 24 ~~~~~v~ELi~NaidA~a--~~I~I~i~~~~----------~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~ 91 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA--TRIDIDIERGG----------AKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAI 91 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC--SEEEEEEEGGG----------TSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTC
T ss_pred CHHHHHHHHHHHHHHCCC--CeEEEEEEeCC----------ceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhc
Confidence 367999999999999984 67887776421 2468899999999999999999987432
Q ss_pred ---CCccccHHHHHHH
Q 001235 1076 ---SEEGISLLISRKL 1088 (1117)
Q Consensus 1076 ---~GtGLGL~ivr~i 1088 (1117)
++.|+||+.+..+
T Consensus 92 ~~~G~~G~gl~si~~v 107 (333)
T 1b63_A 92 ISLGFRGEALASISSV 107 (333)
T ss_dssp CSSCCSSCHHHHHHTT
T ss_pred cccCccccchhhhhcC
Confidence 2379999987443
No 182
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=97.89 E-value=1.7e-06 Score=110.99 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCce--EEE---Eec-cCCCC--CccCCcCCCCCc
Q 001235 203 LAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGE--VVS---EIT-KSGLE--PYLGLHYPATDI 274 (1117)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~--vva---E~~-~~~~~--~~lg~~~p~~di 274 (1117)
.+.++...|.+ +.+++++++.+++.+++++|+||+.||.++++..|. .++ +.. ....+ +..+..||...
T Consensus 154 ~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~~- 230 (878)
T 3bjc_A 154 RLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNK- 230 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCCc-
Confidence 34455666666 679999999999999999999999999999987653 332 111 11111 24455555331
Q ss_pred hHHHHHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEE-cCCccccCCC
Q 001235 275 PQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVV-NDEEEEGDNT 353 (1117)
Q Consensus 275 p~~~r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~-~~~~~~~~~~ 353 (1117)
--+...+..++.-.|+|+...|- -..........++++.|++||+. +
T Consensus 231 -gi~g~v~~~g~pv~I~D~~~dp~----------------------f~~~~~~~~~~~~~S~L~vPL~~~~--------- 278 (878)
T 3bjc_A 231 -GIVGHVAALGEPLNIKDAYEDPR----------------------FNAEVDQITGYKTQSILCMPIKNHR--------- 278 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cHHHHHHhcCceEEeCCcccCcc----------------------cccccccccCCccceEEEEeeEcCC---------
Confidence 12334455555556666654331 01122223355689999999987 5
Q ss_pred cccccccceeeEEeeccCCC---CCCchhHHHHHHHHHHHHHHHHH
Q 001235 354 LPQKRKRLWGLVVCHNTTPR---FVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 354 ~~~~~~~lWGl~~~hh~~p~---~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
|++||.|.++++.+. .++.+....++.++..++..|..
T Consensus 279 -----g~viGvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~n 319 (878)
T 3bjc_A 279 -----EEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHN 319 (878)
T ss_dssp ----------------------------------------------
T ss_pred -----CCEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 78888889999999999988864
No 183
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=97.87 E-value=8.6e-06 Score=93.67 Aligned_cols=77 Identities=14% Similarity=0.263 Sum_probs=58.8
Q ss_pred EecHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhh--------ccCCCC
Q 001235 1002 YGDSIRLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQ--------MFGSEG 1073 (1117)
Q Consensus 1002 ~~D~~~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~--------iFe~f~ 1073 (1117)
.++...+.+++.|++.||+++ ..+.|.|.+.... .|+|.|||+|||++.+++ +|..|+
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~--~~~~I~V~i~~~~------------~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~ 96 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG--YATEILVRLNEDG------------SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLH 96 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SCCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHHHhhhC--CCCEEEEEEEcCC------------EEEEEEcCCCCCHHHhhhccccchhhheeeee
Confidence 477788888888888888874 3578888765421 488999999999999877 887642
Q ss_pred ------------CCCCccccHHHHHHHHHHc
Q 001235 1074 ------------DTSEEGISLLISRKLVKLM 1092 (1117)
Q Consensus 1074 ------------~~~GtGLGL~ivr~iVe~~ 1092 (1117)
+.++.|+||++|+.+.+.+
T Consensus 97 ~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 97 SGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp EESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred ecccccCccccccCCCCCcceeeecccccce
Confidence 1125899999999988643
No 184
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.82 E-value=0.00091 Score=67.45 Aligned_cols=146 Identities=13% Similarity=0.069 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHH
Q 001235 200 SYKLAAKAITRL-QSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAA 278 (1117)
Q Consensus 200 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~ 278 (1117)
.|..+...|+++ .. ..|+...++.+++.+.+.+++||+.+|-+++++. +.+..+... .. -..+||-.. --.
T Consensus 14 ~~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~-~L~l~a~~G-~~--~~~~i~~ge--Gi~ 85 (167)
T 3mmh_A 14 LYREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSD-ELVLAPFQG-PL--ACTRIPFGR--GVC 85 (167)
T ss_dssp HHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTT-EEEEEEEES-SC--CCSEEETTS--HHH
T ss_pred HHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCC-EEEEEEecc-cc--cceEeccCC--ChH
Confidence 454444455554 44 5699999999999999999999999999998754 444332211 11 123444221 234
Q ss_pred HHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCccccc
Q 001235 279 RFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKR 358 (1117)
Q Consensus 279 r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~ 358 (1117)
-.-+..++.-+|+|+...|--+ +| ..+++|-+++||+.+
T Consensus 86 G~v~~~g~~~~v~Dv~~~p~~~---------------------~~------~~~~~S~i~vPi~~~-------------- 124 (167)
T 3mmh_A 86 GQAWAKGGTVVVGDVDAHPDHI---------------------AC------SSLSRSEIVVPLFSD-------------- 124 (167)
T ss_dssp HHHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEEET--------------
T ss_pred HHHHhCCcEEEECCcccCcchh---------------------hc------CccCCeEEEEEeccC--------------
Confidence 5667788888899987665210 11 136789999999987
Q ss_pred ccceeeEEeeccCCCCCCchhHHHHHHHHHHHHHHH
Q 001235 359 KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHV 394 (1117)
Q Consensus 359 ~~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~ 394 (1117)
|+++|.|...+..|+..+.+....++.++..++..+
T Consensus 125 g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~la~~i 160 (167)
T 3mmh_A 125 GRCIGVLDADSEHLAQFDETDALYLGELAKILEKRF 160 (167)
T ss_dssp TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888888888888888777655
No 185
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.66 E-value=8e-05 Score=84.49 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCCCCC
Q 001235 1007 RLQQVLADFLSISINFVPNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEGDTS 1076 (1117)
Q Consensus 1007 ~L~qVL~nLl~NAik~~~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~~~~ 1076 (1117)
++.+++.||+.||+++. ...|.|.+.. ++ ...|+|.|||+|||++.++.+|++|+++|
T Consensus 25 ~~~~vv~eLv~NaiDA~--a~~I~I~i~~-~~---------~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN--ANQIEIIFKD-YG---------LESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEET-TT---------TSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CHHHHHHHHHHHHHHCC--CCEEEEEEEe-CC---------EEEEEEEECCCCcChhHhccceeccccCc
Confidence 36699999999999986 4678877642 22 35688999999999999999999986544
No 186
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.34 E-value=0.0079 Score=62.13 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=98.9
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHhhh-CCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHh
Q 001235 206 KAITRLQSLPSGSMERLCDTMIQEVFELT-GYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMK 284 (1117)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~vr~~~-~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~ 284 (1117)
+.-.-+.. ..++..+++.+++.+++.+ +++++.+|-+++ |+.+..... +.. -..+||-.. --.-.-+..
T Consensus 33 ~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~---~~L~l~~~~-G~~--~~~~i~~Ge--Gi~G~aa~t 102 (195)
T 1vhm_A 33 DFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLGPFQ-GKI--ACVRIPVGR--GVCGTAVAR 102 (195)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET---TEEEEEEEE-ESC--CCSEEETTS--HHHHHHHHH
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC---CEEEEEEec-Ccc--cceEecCCC--ChHHHHHhc
Confidence 33333555 5699999999999999999 999999999976 454433221 111 134444332 134556777
Q ss_pred CCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceee
Q 001235 285 NKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGL 364 (1117)
Q Consensus 285 ~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl 364 (1117)
++.-+|+|+...|--+ . | ..+++|-|+|||+.+ +++.|.
T Consensus 103 g~~i~V~Dv~~~p~~~----------~-----------~------~~~~~S~l~VPI~~~--------------g~viGV 141 (195)
T 1vhm_A 103 NQVQRIEDVHVFDGHI----------A-----------C------DAASNSEIVLPLVVK--------------NQIIGV 141 (195)
T ss_dssp TSCEEESCTTTCTTCC----------C-----------S------CCCCSEEEEEEEEET--------------TEEEEE
T ss_pred CCEEEECCcccCcchh----------h-----------c------CCCccEEEEEeEeEC--------------CEEEEE
Confidence 8888899988654210 0 0 125799999999977 999999
Q ss_pred EEeeccCCCCCCchhHHHHHHHHHHHHHHHH
Q 001235 365 VVCHNTTPRFVPFPLRYACEFLAQVFAIHVN 395 (1117)
Q Consensus 365 ~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~~ 395 (1117)
|......|+..+......++.++..++..|+
T Consensus 142 L~i~s~~~~~F~e~d~~~L~~lA~~ia~ale 172 (195)
T 1vhm_A 142 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 172 (195)
T ss_dssp EEEEESSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888888888888888877764
No 187
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.21 E-value=0.015 Score=57.79 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhC-CCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHH
Q 001235 201 YKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTG-YDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAAR 279 (1117)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~-~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r 279 (1117)
|+.+..-+++|=+. ..|+...++.++..+++.++ +|++-+|-+++ ++.+....... +. -.+||-.. --.-
T Consensus 15 ~~~ll~~l~~ll~~-~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G~-~a--~~ri~~Ge--Gv~G 85 (160)
T 3ksh_A 15 YTLLKKQAASLIED-EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQGH-PA--CVHIPIGK--GVCG 85 (160)
T ss_dssp HHHHHHHHHHTTTT-CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEES-CC--CSEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccCC-cc--cEEeeCCC--CHHH
Confidence 44444445554332 46999999999999999997 99999999974 45554443221 11 12333221 2345
Q ss_pred HHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccc
Q 001235 280 FLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRK 359 (1117)
Q Consensus 280 ~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~ 359 (1117)
.-+..++.-+|+|+...|--+ .| ..+++|-++|||+.+ |
T Consensus 86 ~aa~~~~~i~V~Dv~~~p~~i---------------------~~------~~~~~Sei~VPI~~~--------------g 124 (160)
T 3ksh_A 86 TAVSERRTQVVADVHQFKGHI---------------------AC------DANSKSEIVVPIFKD--------------D 124 (160)
T ss_dssp HHHHHTSCEEESCGGGSTTCC---------------------GG------GTTCSEEEEEEEEET--------------T
T ss_pred HHHhhCCEEEECCcccCcccc---------------------cc------CcccCceEEEEEEEC--------------C
Confidence 667888888999998765211 11 235789999999987 9
Q ss_pred cceeeEEeeccCCCCCCchhHHHHHHHHHHHHHHH
Q 001235 360 RLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHV 394 (1117)
Q Consensus 360 ~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~~ 394 (1117)
+++|.|...+..|+..+.+....++.++..++..|
T Consensus 125 ~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~~ 159 (160)
T 3ksh_A 125 KIIGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQL 159 (160)
T ss_dssp EEEEEEEEEESSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999998888888888888888887776543
No 188
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=97.06 E-value=0.01 Score=60.44 Aligned_cols=145 Identities=6% Similarity=-0.005 Sum_probs=99.6
Q ss_pred HHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHhhh-----CCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCc
Q 001235 201 YKLAAKAITR-LQSLPSGSMERLCDTMIQEVFELT-----GYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDI 274 (1117)
Q Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~-----~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~di 274 (1117)
|..+..-+++ +.. ..++..+++.+++.+.+.+ +++++.+|-++++..++.+.-....... ..+||-..=
T Consensus 25 ~~~ll~~l~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~~---~~~i~~g~G 99 (180)
T 1f5m_A 25 LEQLLLSYEGLSDG--QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVA---CQMIQFGKG 99 (180)
T ss_dssp HHHHHHHHHHHHTT--CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCC---CSEEETTSH
T ss_pred HHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCcc---ceeecCCCc
Confidence 3333333444 344 4689999999999999998 9999999999987645655422111111 244543321
Q ss_pred hHHHHHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEE-cCCccccCCC
Q 001235 275 PQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVV-NDEEEEGDNT 353 (1117)
Q Consensus 275 p~~~r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~-~~~~~~~~~~ 353 (1117)
-.-.-+..++.-+|+|+...|--+ .| ..+++|-+++||+. +
T Consensus 100 --i~G~aa~~g~~v~v~Dv~~dp~~~---------------------~~------~~~~~S~l~vPi~~~~--------- 141 (180)
T 1f5m_A 100 --VCGTAASTKETQIVPDVNKYPGHI---------------------AC------DGETKSEIVVPIISND--------- 141 (180)
T ss_dssp --HHHHHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEECTT---------
T ss_pred --chhhhhhcCCEEEeCCcccCcccc---------------------cc------CcccceEEEEEEEcCC---------
Confidence 234456677777889987655210 11 13789999999997 5
Q ss_pred cccccccceeeEEeeccCCCCCCchhHHHHHHHHHHHHHH
Q 001235 354 LPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIH 393 (1117)
Q Consensus 354 ~~~~~~~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~ 393 (1117)
|++.|.|..++..|+..+......++.++..++..
T Consensus 142 -----g~viGVL~l~s~~~~~F~~~d~~~L~~la~~~a~~ 176 (180)
T 1f5m_A 142 -----GKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKS 176 (180)
T ss_dssp -----SCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -----CeEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 99999999998888888888888888888777654
No 189
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.027 Score=56.59 Aligned_cols=144 Identities=10% Similarity=0.002 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhC-CCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHH
Q 001235 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTG-YDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAA 278 (1117)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~-~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~ 278 (1117)
.|..+..-+++|=+. ..|+...++.++..+++.++ +|++-+|-+++ ++.+..+-.. .+. ..+||-.. --.
T Consensus 15 ~~~~ll~~l~~ll~~-~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~G-~~a--~~ri~~Ge--Gv~ 85 (171)
T 3rfb_A 15 RYQMLNEELSFLLEG-ETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQG-GVS--CIRIALGK--GVC 85 (171)
T ss_dssp HHHHHHHHHHHHHTT-CCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEES-SSC--CCEEETTS--HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEeccC-Ccc--ceEeeCCc--CHH
Confidence 455444445554331 56999999999999999997 99999999874 4555444222 111 12333211 245
Q ss_pred HHHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCccccc
Q 001235 279 RFLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKR 358 (1117)
Q Consensus 279 r~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~ 358 (1117)
-.-+..++.-+|+|+...|--+ .| ..++++-++|||+.+
T Consensus 86 G~va~tg~~i~V~Dv~~~p~~i---------------------~~------~~~~~Sei~VPI~~~-------------- 124 (171)
T 3rfb_A 86 GEAAHFQETVIVGDVTTYLNYI---------------------SC------DSLAKSEIVVPMMKN-------------- 124 (171)
T ss_dssp HHHHHTTSCEEESCTTSCSSCC---------------------CS------CTTCCEEEEEEEEET--------------
T ss_pred HHHHhhCCEEEECCcccCcccc---------------------cc------CcccCceEEEEEEEC--------------
Confidence 5677888999999998776211 01 124688999999987
Q ss_pred ccceeeEEeeccCCCCCCchhHHHHHHHHHHHHHH
Q 001235 359 KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIH 393 (1117)
Q Consensus 359 ~~lWGl~~~hh~~p~~~~~~~r~~~~~l~~~~~~~ 393 (1117)
|+++|.|...+..|+..+.+....++.++..++..
T Consensus 125 g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~ 159 (171)
T 3rfb_A 125 GQLLGVLDLDSSEIEDYDAMDRDYLEQFVAILLEK 159 (171)
T ss_dssp TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998888888878888888877766543
No 190
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.76 E-value=0.00026 Score=76.69 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccC
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFG 1070 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe 1070 (1117)
.+|.+|+.||+++.. .++.+.|.+....+ .-.|+|.|||+||+.+.+...|.
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~---------~~~l~I~DnGiGMt~edl~~~l~ 96 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE---------KNLLHVTDTGVGMTREELVKNLG 96 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCC---------ceEEEEEECCCCCCHHHHHHHhh
Confidence 478999999998853 23445555555433 23578889999999999866553
No 191
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=96.74 E-value=0.00079 Score=71.22 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCC
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGS 1071 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~ 1071 (1117)
.+|.+|+.||+++.. .++.+.|.+....+ ...|+|.|||+||+++.+...|..
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~---------~~~i~I~DnG~GMs~edl~~~l~~ 95 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE---------QKVLEIRDSGIGMTKAELINNLGT 95 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGG---------GTEEEEEECSCCCCHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCC---------CCEEEEEEcCCCCCHHHHHHHHHh
Confidence 588999999999864 13455555554333 235788899999999998877754
No 192
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.44 E-value=0.0042 Score=58.88 Aligned_cols=96 Identities=5% Similarity=0.001 Sum_probs=73.5
Q ss_pred ccEEEEeCCCcEEeecHHHHHHcCCCc--ccccCCccccccccCcHH--HHHHHHHHHHcCCcceeeEEEEEeeccccCC
Q 001235 627 VPILAVDVDGLVNGWNTKIAELTGLSV--DKAIGKHFLTLVEDSSID--TVKRMLYLALQGQEEQNIQFEIKTHGSKIND 702 (1117)
Q Consensus 627 ~gi~~~D~dG~I~~~N~a~~~l~G~s~--eeliG~~~~dlv~~~~~~--~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG 702 (1117)
.-+.-.|.+|+|+++.++.. ..++.. +|++|+.+.+++|++|.+ .+.+..+.++..+......++++ .++|
T Consensus 8 ~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr----~k~g 82 (132)
T 1oj5_A 8 SFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFI----LNDG 82 (132)
T ss_dssp EEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEE----CTTS
T ss_pred eeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEE----ecCC
Confidence 34556899999999999887 477777 899999999999999976 88888888887666555556665 5689
Q ss_pred ceEEEEEEEEEeecCC-CCEEEEEEE
Q 001235 703 DPITLIVNACASRDLH-DNVVGVCFV 727 (1117)
Q Consensus 703 ~~~~v~v~~~pi~d~~-G~v~gv~~v 727 (1117)
+.+|+...+..+++.. +.+-.++++
T Consensus 83 ~~V~~qT~sk~f~np~t~e~e~Ivs~ 108 (132)
T 1oj5_A 83 TMLSAHTRCKLCYPQSPDMQPFIMGI 108 (132)
T ss_dssp CEEEEEEEEEEECC----CCCEEEEE
T ss_pred cEEEEEEEEEEecCCCCCCCCEEEEE
Confidence 9999999998888752 344444444
No 193
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.36 E-value=0.002 Score=69.68 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCCC--
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSEG-- 1073 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f~-- 1073 (1117)
.+|.+|+.||+++.. ..+.|.|.+....+ .-.|+|.|||+||+++.+...|....
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~---------~~~I~I~DnG~GMs~edL~~~l~~ia~S 141 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGTIAKS 141 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCC---------eeEEEEEECCcCCCHHHHHHHHHhhccc
Confidence 588999999998764 12455555554332 12578889999999999866554321
Q ss_pred ----------------CCCCccccHHHHHHHH
Q 001235 1074 ----------------DTSEEGISLLISRKLV 1089 (1117)
Q Consensus 1074 ----------------~~~GtGLGL~ivr~iV 1089 (1117)
..+..|+|++.+..++
T Consensus 142 ~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 142 GTKAFMEALQAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp CHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE
T ss_pred cchhhhhhhccccchhhcCCCCCCccccccCC
Confidence 1113589998886654
No 194
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=96.30 E-value=0.014 Score=53.57 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhh-ccc
Q 001235 888 TALKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDD-SDL 949 (1117)
Q Consensus 888 ~~~~k~~~la~isHEIrnPL~~I~~~~~LL~~~~l~~~~~~~l~~i~~~~~~l~~ii~d-Ld~ 949 (1117)
....+..+++.++||+||||+.|.++.+++... .....+.+.....+|..++++ +++
T Consensus 56 ~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 56 LADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566789999999999999999999988643 344558888889999999998 454
No 195
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.21 E-value=0.011 Score=67.54 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcc--CCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhh--------hhhccCCCC-----
Q 001235 1009 QQVLADFLSISINFV--PNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPL--------LDQMFGSEG----- 1073 (1117)
Q Consensus 1009 ~qVL~nLl~NAik~~--~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~--------~~~iFe~f~----- 1073 (1117)
..++.+++.||++.. .....|.|.+.... .|+|.|||.|||.+. .+.+|..+.
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf 100 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHADQ------------SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEecCC------------EEEEEECCCCcCcccccccCcchhhheeeeecccCCc
Confidence 456667777777653 22567887765432 488999999999988 556676631
Q ss_pred -----CCC-C-ccccHHHHHHHH
Q 001235 1074 -----DTS-E-EGISLLISRKLV 1089 (1117)
Q Consensus 1074 -----~~~-G-tGLGL~ivr~iV 1089 (1117)
..+ | .|.||+.+..+.
T Consensus 101 ~~~~~~~sgGl~GvGls~vnalS 123 (390)
T 1s16_A 101 SNKNYQFSGGLHGVGISVVNALS 123 (390)
T ss_dssp SSSSCSSCSCCSSCHHHHHHHTE
T ss_pred CCCcccccCCccccchHHHHHhh
Confidence 112 4 699999996665
No 196
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.17 E-value=0.003 Score=67.35 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCCC
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGSE 1072 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~f 1072 (1117)
.++.+|+.||+++.. ..+.+.|.+....+ ...|+|.|||+||+++.+...|..+
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~---------~~~i~I~DnG~GMs~edl~~~~~~i 117 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD---------KRTLTISDNGVGMTRDEVIDHLGTI 117 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSSCCCHHHHHHHHTTC
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCC---------ceEEEEEECCCCCCHHHHHHHHHHH
Confidence 688999999999862 13334444444332 1248888999999999998877553
No 197
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.14 E-value=0.01 Score=67.88 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhccCC--CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhh--------hccCCC----
Q 001235 1007 RLQQVLADFLSISINFVPN--GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLD--------QMFGSE---- 1072 (1117)
Q Consensus 1007 ~L~qVL~nLl~NAik~~~~--~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~--------~iFe~f---- 1072 (1117)
.|..++.+++.||++..-. ...|.|.+.... .|+|.|||.|||.+..+ -+|...
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhags 101 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN------------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 101 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS------------CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEES
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC------------EEEEEECCCCcccCcccccCcchHHHhheeccccC
Confidence 6788899999999987422 457777765432 48899999999998843 355532
Q ss_pred ------CCCC-C-ccccHHHHHHHH
Q 001235 1073 ------GDTS-E-EGISLLISRKLV 1089 (1117)
Q Consensus 1073 ------~~~~-G-tGLGL~ivr~iV 1089 (1117)
+..+ | .|.||+.+-.+-
T Consensus 102 Kf~~~~~~vSgGl~GvGls~vnalS 126 (391)
T 1ei1_A 102 KFDDNSYKVSGGLHGVGVSVVNALS 126 (391)
T ss_dssp CSSSSSCSSCSCCSSCHHHHHHHTE
T ss_pred CcCCCcccccCCccccchHHHHHhc
Confidence 1122 3 699999996555
No 198
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.07 E-value=0.0097 Score=56.42 Aligned_cols=95 Identities=7% Similarity=0.078 Sum_probs=70.7
Q ss_pred eeeeCCCCceeechhhHHHhcCCCh--hhHhhcchhhhhcCCchhhhhccChhHHH--HHHHHHHHHhcCCCCceEeEEE
Q 001235 762 IFGSDEFGWCCEWNPAMVKLTGWKR--EEVIDKLLLAEVFGTNMACCRLKNQEAFV--NLGIVLNKAMSGQDPEKVPFGF 837 (1117)
Q Consensus 762 I~~~D~~g~i~~~N~a~~~l~G~~~--eEliGk~l~~ei~~~~~~~~~l~~~d~~~--~~~~~l~~~l~g~~~~~~e~~~ 837 (1117)
+.-.|.+|+|+++..... ..++.+ +|++|+.+. .+.|++|.. .+.....+++..+......+++
T Consensus 10 ~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy-----------~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRf 77 (132)
T 1oj5_A 10 MTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIY-----------AFFQPQGREPSYARQLFQEVMTRGTASSPSYRF 77 (132)
T ss_dssp EEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHH-----------HHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEE
T ss_pred EEeecCCCcEEEEecccc-cccccccHHHHHHHHHH-----------HHhCcccchHHHHHHHHHHHHHcCCccccceEE
Confidence 456789999999999887 477777 999999854 555666644 6777777777766667778999
Q ss_pred EecCCcEEEEEEEEeeeeCC-CCCEEEEEeeh
Q 001235 838 FARNGKYAECLLCVNKKLDR-EGAVTGVFCFL 868 (1117)
Q Consensus 838 ~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~i~ 868 (1117)
+.++|.++|+......+++. ..++-.++++-
T Consensus 78 r~k~g~~V~~qT~sk~f~np~t~e~e~Ivs~n 109 (132)
T 1oj5_A 78 ILNDGTMLSAHTRCKLCYPQSPDMQPFIMGIH 109 (132)
T ss_dssp ECTTSCEEEEEEEEEEECC----CCCEEEEEE
T ss_pred EecCCcEEEEEEEEEEecCCCCCCCCEEEEEE
Confidence 99999999999988888774 23444444443
No 199
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.71 E-value=0.015 Score=60.21 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhccCC--CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhh
Q 001235 1009 QQVLADFLSISINFVPN--GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLL 1065 (1117)
Q Consensus 1009 ~qVL~nLl~NAik~~~~--~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~ 1065 (1117)
..++.+|+.||++..-. ...|.|.+.. + + .|+|.|||.|||.+..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~--~--g--------~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHA--D--Q--------SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT--T--S--------CEEEEECSSCCCCSBC
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeC--C--C--------EEEEEECCCCcCcccc
Confidence 68899999999988421 4577777642 2 1 4889999999999874
No 200
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=95.70 E-value=0.0018 Score=82.97 Aligned_cols=142 Identities=9% Similarity=0.019 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCC---------CCCccCCcCCCCCchHHHHHHHHhCCe
Q 001235 217 GSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSG---------LEPYLGLHYPATDIPQAARFLFMKNKV 287 (1117)
Q Consensus 217 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~---------~~~~lg~~~p~~dip~~~r~l~~~~~~ 287 (1117)
.+++++++.+++.+++++++||+.||-+++++ ++.++.+.... ..+.-+.++|-.. .-+...+..++.
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~-~~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~--gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDC-SDSFSSVFHMECEELEKSSDTLTREHDANKINY--MYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCcc-cchhHHHhhccccccccccccccccccccchhh--hHHHHHhhcCCe
Confidence 58999999999999999999999999999864 34455433211 1111133444321 112234445555
Q ss_pred EEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHh---cCceeEEEEEEEEcCCccccCCCccccc-cccee
Q 001235 288 RMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMEN---MNSIASLVMAVVVNDEEEEGDNTLPQKR-KRLWG 363 (1117)
Q Consensus 288 r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n---~~v~asl~~~i~~~~~~~~~~~~~~~~~-~~lWG 363 (1117)
-.|.|+...|- -+.+..-... .++++-|++||+.+ + |+++|
T Consensus 425 v~i~D~~~d~r----------------------~~~~~~~~~g~~~~~~rS~L~vPL~~~-------------~~g~viG 469 (878)
T 3bjc_A 425 LNIPDVSKDKR----------------------FPWTTENTGNVNQQCIRSLLCTPIKNG-------------KKNKVIG 469 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCcccccc----------------------cccccccccCccccccceEEEEEEecC-------------CCCcEEE
Confidence 55666544331 0111111222 66899999999753 2 68999
Q ss_pred eEEeeccCC------CCCCchhHHHHHHHHHHHHHHHHH
Q 001235 364 LVVCHNTTP------RFVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 364 l~~~hh~~p------~~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
.|...+..+ +.++......++.++..+|+.|..
T Consensus 470 VL~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIen 508 (878)
T 3bjc_A 470 VCQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQN 508 (878)
T ss_dssp ---------------------------------------
T ss_pred EEEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999988765 688888888899999988888864
No 201
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.45 E-value=0.029 Score=58.77 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhccCC--CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhh--------hhccCC----
Q 001235 1006 IRLQQVLADFLSISINFVPN--GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLL--------DQMFGS---- 1071 (1117)
Q Consensus 1006 ~~L~qVL~nLl~NAik~~~~--~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~--------~~iFe~---- 1071 (1117)
..|..++.+++.||++..-. ...|.|.+.... .|+|.|||.|||.+.. +-+|..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g------------~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN------------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC------------cEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 46889999999999987422 457777755421 3889999999999874 234421
Q ss_pred --C----CCCC-C-ccccHHHHHHHH
Q 001235 1072 --E----GDTS-E-EGISLLISRKLV 1089 (1117)
Q Consensus 1072 --f----~~~~-G-tGLGL~ivr~iV 1089 (1117)
| +..+ | .|.|++.+--+-
T Consensus 102 ~Kfd~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 102 GKFDDNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp SCCCTTC--------CCCHHHHHHTE
T ss_pred CCcCCCccccccCccceecchhcccc
Confidence 2 1111 3 589999885443
No 202
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=95.44 E-value=0.014 Score=61.55 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCC
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGS 1071 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~ 1071 (1117)
-+|.+|+.||+++.. .++.+.|.+....+ .-.|+|.|||+||+++.+..-|..
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~---------~~~i~V~DnG~GMs~edl~~~l~~ 101 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGT 101 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTGGGS
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCC---------eeEEEEEeCCCCCCHHHHHHHHHh
Confidence 578899999997742 12345555554333 125788899999999998765543
No 203
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=95.41 E-value=0.17 Score=49.76 Aligned_cols=135 Identities=14% Similarity=0.092 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHH
Q 001235 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAAR 279 (1117)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r 279 (1117)
.++++..+-..|-+ .+.+++++.+++..++++|+||..+|-+++| |+....+....- +|
T Consensus 13 rLrlL~e~~~~L~~---l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa~G~~----------------~~ 71 (160)
T 3cit_A 13 RLRLLVDTGQELIQ---LPPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTARHGSK----------------ER 71 (160)
T ss_dssp HHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEESCH----------------HH
T ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCeeEEEEEcCC--CceeeeeccCch----------------hh
Confidence 45566666666633 4679999999999999999999999999995 666544433311 11
Q ss_pred HHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccc
Q 001235 280 FLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRK 359 (1117)
Q Consensus 280 ~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~ 359 (1117)
...+|+++|....- | .-. +..-+..++=|+||+.. .+|
T Consensus 72 ----l~~lr~~~~~~~~g----p-----r~~----------------~~tg~~t~svl~vPL~~-------------~~g 109 (160)
T 3cit_A 72 ----LSTLETTADPLAIG----P-----QWL----------------ERPGTHLPCVLLLPLRG-------------ADE 109 (160)
T ss_dssp ----HTTSCCCCCTTCCS----C-----EEE----------------ECTTSSSCEEEEEEEEC-------------SSS
T ss_pred ----hhhhhccccccccc----c-----ccc----------------cccCcccceeEEEeeec-------------CCC
Confidence 33455555554331 0 000 01223347778999952 239
Q ss_pred cceeeEEeeccC-CCCCCchhHHHHHHHHHHHHHHHHHH
Q 001235 360 RLWGLVVCHNTT-PRFVPFPLRYACEFLAQVFAIHVNKE 397 (1117)
Q Consensus 360 ~lWGl~~~hh~~-p~~~~~~~r~~~~~l~~~~~~~~~~~ 397 (1117)
+.+|.+.+=+.. ....+.+...+++.|+.+++.+|...
T Consensus 110 ~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aien~ 148 (160)
T 3cit_A 110 GSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLENN 148 (160)
T ss_dssp SEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997764 44788888999999999999887543
No 204
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=94.84 E-value=0.057 Score=56.77 Aligned_cols=73 Identities=19% Similarity=0.376 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHHHhhccCC--CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhh-------hhhccCC---
Q 001235 1004 DSIRLQQVLADFLSISINFVPN--GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPL-------LDQMFGS--- 1071 (1117)
Q Consensus 1004 D~~~L~qVL~nLl~NAik~~~~--~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~-------~~~iFe~--- 1071 (1117)
+..-|.+++.+++.||++..-. ...|.|.+.... .|+|.|||.|||.+. .+-+|..
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g------------~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lha 104 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG------------SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHA 104 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC------------eEEEEEcCCCccccccccCceehheeEEeecc
Confidence 3456889999999999987532 346666654321 388999999999997 4555632
Q ss_pred ---CC----CCC-C-ccccHHHHHHH
Q 001235 1072 ---EG----DTS-E-EGISLLISRKL 1088 (1117)
Q Consensus 1072 ---f~----~~~-G-tGLGL~ivr~i 1088 (1117)
|. ..+ | .|.|++.+--+
T Consensus 105 g~Kfd~~~yk~SgGlhGvG~svvNAL 130 (226)
T 4emv_A 105 GGKFGQGGYKTSGGLHGVGSSVVNAL 130 (226)
T ss_dssp -------------CGGGCCHHHHHHT
T ss_pred cCccCccceEeccccccccchhhhhc
Confidence 21 111 3 58999988443
No 205
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=94.61 E-value=0.076 Score=60.76 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhcc---CCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhh--------hhccCC---
Q 001235 1006 IRLQQVLADFLSISINFV---PNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLL--------DQMFGS--- 1071 (1117)
Q Consensus 1006 ~~L~qVL~nLl~NAik~~---~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~--------~~iFe~--- 1071 (1117)
.-|..++.+++.||++.. +....|.|.+...+. .|+|.|||.|||.+.. +-+|..
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~~-----------~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lha 119 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN-----------LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 119 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSE
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCCC-----------EEEEEECCCcccCccccccCccchhheeeeecc
Confidence 468899999999999886 335678887765422 4888899999999873 334442
Q ss_pred ---C----CC-CCC-ccccHHHHHHH
Q 001235 1072 ---E----GD-TSE-EGISLLISRKL 1088 (1117)
Q Consensus 1072 ---f----~~-~~G-tGLGL~ivr~i 1088 (1117)
| +. +.| .|.|++.+-.+
T Consensus 120 gsKf~~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 120 SSNYDDDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp ESCCCGGGCCCCSCCSSCHHHHHHHT
T ss_pred cCCCCCCcccccCCccccceeeeEEe
Confidence 2 11 223 59999998554
No 206
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=94.59 E-value=0.029 Score=59.90 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhcc
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMF 1069 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iF 1069 (1117)
.+|.+|+.||.++.. .+..+.|.+....+ .-.|+|.|||+||+++.+..-|
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCC---------ceEEEEecCCCCcCHHHHHHHH
Confidence 578999999997742 12345555554433 1257888999999999875433
No 207
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=94.50 E-value=0.063 Score=60.92 Aligned_cols=49 Identities=4% Similarity=0.043 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHhhccCC--CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhh
Q 001235 1004 DSIRLQQVLADFLSISINFVPN--GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPL 1064 (1117)
Q Consensus 1004 D~~~L~qVL~nLl~NAik~~~~--~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~ 1064 (1117)
+...|..++.+|+.||++..-. ...|.|.+.... .|+|.|||.|||.|.
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g------------~I~V~DnGrGIp~e~ 77 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG------------SIALFCTSRTVTAEN 77 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEEEESSCCHHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC------------EEEEEECCCCcCHhH
Confidence 4567899999999999996432 346776655322 488999999999843
No 208
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=94.06 E-value=0.02 Score=60.93 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccCC
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFGS 1071 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe~ 1071 (1117)
.+|.+|+.||+++.. ..+.+.|.+....+ .-.|+|.|||+||+++.+...|..
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~---------~~~i~I~DnG~GMt~edl~~~l~~ 101 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE---------KNLLHVTDTGVGMTREELVKNLGT 101 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHC
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCC---------CCEEEEEECCcCCCHHHHHHHHhh
Confidence 578999999998853 12334444444332 125788899999999998776643
No 209
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=93.99 E-value=0.16 Score=52.38 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHhhcc--CCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhh
Q 001235 1004 DSIRLQQVLADFLSISINFV--PNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPL 1064 (1117)
Q Consensus 1004 D~~~L~qVL~nLl~NAik~~--~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~ 1064 (1117)
+...|..++.+++.||++.. .....|.|.+.... .|+|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC------------eEEEEECCCCccccc
Confidence 45678899999999999863 22567777765432 488899999999974
No 210
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=93.92 E-value=0.13 Score=59.05 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhcc---CCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhh--------ccCC---
Q 001235 1006 IRLQQVLADFLSISINFV---PNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQ--------MFGS--- 1071 (1117)
Q Consensus 1006 ~~L~qVL~nLl~NAik~~---~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~--------iFe~--- 1071 (1117)
.-|.+++.+++.||++.. +....|.|.+...+. .|+|.|||.|||.+..++ +|..
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~~-----------sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~Lha 131 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 131 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred chHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCCC-----------EEEEEECCCcccCcccccCCcccceEEEEEEec
Confidence 357889999999999765 335688888776533 378889999999887543 4422
Q ss_pred ---C----CCCC-C-ccccHHHHHHH
Q 001235 1072 ---E----GDTS-E-EGISLLISRKL 1088 (1117)
Q Consensus 1072 ---f----~~~~-G-tGLGL~ivr~i 1088 (1117)
| +..+ | .|.|.+.|--+
T Consensus 132 GgKfd~~~ykvSGGLhGVG~SvVNAL 157 (418)
T 1pvg_A 132 SSNYDDDEKKVTGGRNGYGAKLCNIF 157 (418)
T ss_dssp ESCCCTTSCCCCSCCSSCHHHHHHHT
T ss_pred ccccCCCceeccCCccceeeeeeeec
Confidence 2 2222 3 59999998544
No 211
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=93.91 E-value=0.28 Score=44.55 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc-ccc
Q 001235 890 LKRLKALAYTKRQIRNPLSGIIFSRKMMEGTELGAEQKRLLHTSAQCQRQLHKILDDS-DLD 950 (1117)
Q Consensus 890 ~~k~~~la~isHEIrnPL~~I~~~~~LL~~~~l~~~~~~~l~~i~~~~~~l~~ii~dL-d~s 950 (1117)
..+..++..++|++++|++.|.+..+.+.... .+..+.+.....+|..+++++ +++
T Consensus 58 ~~~~~~~~~~shel~~~l~~i~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 58 DDRTLLMAGVSHDLRTPLTRIRLATEMMSEQD-----GYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGG-----HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567799999999999999999998775432 456677888888999999884 654
No 212
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=93.70 E-value=0.033 Score=60.11 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhh
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQ 1067 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~ 1067 (1117)
-.|.+|++||.++.. ..+.+.|.+....+ .-.|+|.|||+||+++.+..
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~---------~~tLtI~DNGiGMt~edL~~ 111 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKE---------KNILSITDTGIGMTKVDLIN 111 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCC---------CcEEEEEeCCCCCCHHHHHH
Confidence 467899999988742 12345555544433 12477889999999998753
No 213
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.044 Score=66.44 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccC
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFG 1070 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe 1070 (1117)
-+|.+|+.||+++.. ..+.+.|.+....+ .-.|+|.|||+||+.+.+..-|.
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~---------~~~I~I~DnGiGMt~edl~~~l~ 94 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE---------QKVLEIRDSGIGMTKAELINNLG 94 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGG---------GTEEEEEECSCCCCHHHHHGGGS
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCC---------CCEEEEEECCCCCCHHHHHHHHH
Confidence 478999999998762 12334444444333 12478889999999998866553
No 214
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=93.00 E-value=0.15 Score=58.29 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhccCC--CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhh--------hccCC------C
Q 001235 1009 QQVLADFLSISINFVPN--GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLD--------QMFGS------E 1072 (1117)
Q Consensus 1009 ~qVL~nLl~NAik~~~~--~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~--------~iFe~------f 1072 (1117)
..++.+++.||++..-. ...|.|.+.... .|+|.|||.|||.+..+ -+|.. |
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~dg------------sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKf 119 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYKDG------------SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKF 119 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECTTS------------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeCCC------------eEEEEEcCCCCCcccccccCCcchheEEEecccCCCc
Confidence 67888999999977422 456777654321 38899999999998753 34421 2
Q ss_pred ----CCCC-C-ccccHHHHHHH
Q 001235 1073 ----GDTS-E-EGISLLISRKL 1088 (1117)
Q Consensus 1073 ----~~~~-G-tGLGL~ivr~i 1088 (1117)
+..+ | .|.|++.|--+
T Consensus 120 d~~~ykvSgGlhGvG~svVNAL 141 (408)
T 3lnu_A 120 NNRNYTFSGGLHGVGVSVVNAL 141 (408)
T ss_dssp --------------CHHHHHHT
T ss_pred CCCceeecCCccccccceehhc
Confidence 1222 3 58999988444
No 215
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=92.68 E-value=0.11 Score=61.78 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhcc----------------CCCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhccC
Q 001235 1010 QVLADFLSISINFV----------------PNGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMFG 1070 (1117)
Q Consensus 1010 qVL~nLl~NAik~~----------------~~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iFe 1070 (1117)
.+|.+|+.||+++. .....|.|.+ ..+ + -.|+|.|||+||+.+.+..-|.
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~--d~~--~-------~~I~I~DnGiGMt~edl~~~l~ 95 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DKD--K-------RTLTISDNGVGMTRDEVIDHLG 95 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE--ETT--T-------TEEEEEECSSCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE--eCC--C-------cEEEEEECCCCCCHHHHHHHHh
Confidence 57899999999886 1123555554 332 1 1578889999999999766554
No 216
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=90.80 E-value=0.13 Score=54.42 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhh
Q 001235 1010 QVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLD 1066 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~ 1066 (1117)
..|.+|++||.++.. .++.+.|.+....+ .-.|+|.|||+||+++.+.
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ---------ERTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCC---------ccEEEEEeCCCCCCHHHHH
Confidence 578899999987641 12345555555433 2257888999999999874
No 217
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=89.13 E-value=0.3 Score=58.99 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhccC--------------CC--CeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhhcc
Q 001235 1010 QVLADFLSISINFVP--------------NG--GQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQMF 1069 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--------------~~--g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~iF 1069 (1117)
.+|.+|+.||+++.. +. ..|.|.+ ..+ + -.|+|.|||+||+.+.+..-|
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~--d~~--~-------~~I~I~DnGiGMt~edl~~~l 94 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DKD--K-------RTLTISDNGVGMTRDEVIDHL 94 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE--ETT--T-------TEEEEEECSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE--eCC--C-------cEEEEEECCCCCCHHHHHHHH
Confidence 578999999998861 12 3455543 332 1 157888999999999876544
No 218
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=88.85 E-value=0.37 Score=58.43 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=37.7
Q ss_pred EEecHHHHHHHHHHHHHHHhhccC--------------CCCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhh
Q 001235 1001 LYGDSIRLQQVLADFLSISINFVP--------------NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLD 1066 (1117)
Q Consensus 1001 v~~D~~~L~qVL~nLl~NAik~~~--------------~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~ 1066 (1117)
+|.++. -+|.+|+.||+++.. ..+.+.|.+....+ + -.|+|.|||+||+.+.+.
T Consensus 42 LYsn~e---ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~--~-------~~I~I~DnGiGMt~edl~ 109 (666)
T 2o1u_A 42 LYKNKE---IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE--K-------NLLHVTDTGVGMTREELV 109 (666)
T ss_dssp TSSSCT---THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETT--T-------TEEEEEECSCCCCHHHHH
T ss_pred ccCCch---HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCC--C-------CEEEEEECCCCCCHHHHH
Confidence 445543 578999999998861 12334444444333 1 147788999999999976
Q ss_pred hccC
Q 001235 1067 QMFG 1070 (1117)
Q Consensus 1067 ~iFe 1070 (1117)
.-|.
T Consensus 110 ~~l~ 113 (666)
T 2o1u_A 110 KNLG 113 (666)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6553
No 219
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=88.03 E-value=0.16 Score=53.76 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.5
Q ss_pred EEEEeecCCCCChhhhhhccC
Q 001235 1050 ELRITHAGGGIPEPLLDQMFG 1070 (1117)
Q Consensus 1050 ~i~V~D~G~GI~~e~~~~iFe 1070 (1117)
.|+|.|||+||+.+.+..-|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~Lg 151 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLG 151 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTT
T ss_pred EEEEEeCCCCCCHHHHHHHHH
Confidence 578889999999999886553
No 220
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=81.51 E-value=1.8 Score=48.19 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=40.9
Q ss_pred ccE-EEEeC-CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHH
Q 001235 627 VPI-LAVDV-DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRM 676 (1117)
Q Consensus 627 ~gi-~~~D~-dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~ 676 (1117)
-|+ +++|. +++|+.+|..+++++|+++++++|+++.++++++....+...
T Consensus 42 ~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~ 93 (337)
T 2ool_A 42 HGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHA 93 (337)
T ss_dssp TSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHH
T ss_pred CEEEEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHH
Confidence 344 45665 589999999999999999999999999999998776654443
No 221
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=80.43 E-value=6.2 Score=40.36 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCc--cEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeE
Q 001235 613 AVTSEMVRLIETATV--PILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQ 690 (1117)
Q Consensus 613 ~~~~~l~~lie~a~~--gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e 690 (1117)
.....+..+.+..+. .+++.|.+|.++..+.. ...+ ....+++.+. .++.++...-..
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~~----------~~~~------~~~~~r~~f~----~a~~~~~~~is~ 114 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNAKGDVTASTTE----------LKTK------VNLADRSFFI----KAKETKKTVISD 114 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEETTCBEEEESSC----------CSSC------CBCTTSHHHH----HHHHHCSCEECC
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCcEEEecCC----------CCCC------CCcchhHHHH----HHHhcCCcEEec
Confidence 344556666666654 68899999999876431 0011 1223444333 344423221101
Q ss_pred EEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCc
Q 001235 691 FEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGW 770 (1117)
Q Consensus 691 ~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~ 770 (1117)
.+. -...|. ++..-+.|+++.+|++.|++++..|+...... +..+- ... -++++|.+|.
T Consensus 115 -~~~---~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~----------~~~~~--~gg---~~~l~d~~G~ 173 (217)
T 4dah_A 115 -SYS---SRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKNL----------INLLS--PDV---YIEVVNQDGK 173 (217)
T ss_dssp -CEE---CTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHHH----------HHHHC--TTS---CEEEEETTSC
T ss_pred -eEE---cCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHHH----------HHhcC--CCc---EEEEEcCCCC
Confidence 111 122343 56677889999999999999987776553322 22221 112 5899999999
Q ss_pred eeechhhH
Q 001235 771 CCEWNPAM 778 (1117)
Q Consensus 771 i~~~N~a~ 778 (1117)
++......
T Consensus 174 ii~~~~~~ 181 (217)
T 4dah_A 174 MIFASGQA 181 (217)
T ss_dssp EEEEESCG
T ss_pred EEEeCCCC
Confidence 88765443
No 222
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=78.99 E-value=34 Score=35.62 Aligned_cols=128 Identities=8% Similarity=-0.020 Sum_probs=78.4
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCC
Q 001235 207 AITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNK 286 (1117)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~ 286 (1117)
.+.++.+ +.+.+++.+.+ ..+.+.+|||++..+-+.+...+ .+ ..++ -+..|....+.|..+.
T Consensus 8 ~~~~l~~--a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~i-----~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSR--ITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYHF-----LSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHH--CCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEEE-----EECCCHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeEe-----eCCCCHHHHHHHHHCC
Confidence 4566777 45888888887 77888999999998876643211 01 1111 2355788888888876
Q ss_pred eEEEeccCCcccccccCCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEE
Q 001235 287 VRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVV 366 (1117)
Q Consensus 287 ~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~ 366 (1117)
...| .||-.. ......|+.-+....+. .+--.++.+.+|+...+++|+.-. +..+|++.
T Consensus 71 y~~~-----DPv~~~-~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~--------------~g~~g~ls 129 (237)
T 3szt_A 71 YTSI-----DPIVRH-GLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGK--------------YGLISMLS 129 (237)
T ss_dssp GGGT-----CHHHHH-HHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECG--------------GGCEEEEE
T ss_pred Cccc-----ChHhhh-hcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCC--------------CCCeEEEE
Confidence 4321 122111 00112233333222222 255667888999999999999744 67888888
Q ss_pred eeccCC
Q 001235 367 CHNTTP 372 (1117)
Q Consensus 367 ~hh~~p 372 (1117)
.....+
T Consensus 130 ~~~~~~ 135 (237)
T 3szt_A 130 LVRSSE 135 (237)
T ss_dssp EEESSS
T ss_pred EecCCC
Confidence 776554
No 223
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=78.61 E-value=43 Score=31.64 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCcc
Q 001235 218 SMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARH 297 (1117)
Q Consensus 218 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~ 297 (1117)
++++.....-+-++++.|+-=..||-||.+-.-= |-++.-++++ . .--+|..-+ +.||-
T Consensus 13 ~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf--~~~rs~~~pa--------~-----~l~~~r~mp--l~p~k---- 71 (162)
T 3eea_A 13 DVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDF--APARSTGLPA--------S-----FLPVFREMP--LAPDK---- 71 (162)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSE--EEEEEESCCG--------G-----GHHHHHHCC--BCTTT----
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEeehhhhcc--ccccccCCch--------h-----hhHHHhhCC--CCCCc----
Confidence 6777777777778999999999999999765432 3333333332 1 112232211 11221
Q ss_pred ccccc----CCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCC
Q 001235 298 VKVLQ----DEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPR 373 (1117)
Q Consensus 298 v~~~~----~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~ 373 (1117)
+|++. ...---+-|-+.|+| ..|-...+++|+.+.| +|++++ ++.=|.+.+-..++|
T Consensus 72 ~pllk~~lr~~~hll~~dp~~s~l--~tp~l~k~~~~~~ILg---VPL~~g--------------~qVIGVLFaArR~~R 132 (162)
T 3eea_A 72 IPLLKSMLRKRQHLMLTDPGSSDL--LTPKLRKLLRNLCVLA---VPMVVR--------------TQVIGAVFMARTRDN 132 (162)
T ss_dssp CHHHHHHHHHTCCEEESCGGGCTT--SCHHHHHHTTTEEEEE---EEEEET--------------TEEEEEEEEEEETTS
T ss_pred cHHHHHHHHhcCccccCCCCcchh--ccHHHHHHHhhCeEEE---ecceeC--------------CEEEEEEEEeccccc
Confidence 12210 000001112222332 6789999999998877 999998 999999999999999
Q ss_pred -CCCchhHHHHHHHHHHHHHHHHH
Q 001235 374 -FVPFPLRYACEFLAQVFAIHVNK 396 (1117)
Q Consensus 374 -~~~~~~r~~~~~l~~~~~~~~~~ 396 (1117)
..+.+++....-|+.+.++.|+.
T Consensus 133 ~~Fs~dEiALL~SLAahAAIAIdn 156 (162)
T 3eea_A 133 PPFSDAETAIIRDLVSHAALVVSH 156 (162)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888864
No 224
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=73.55 E-value=19 Score=33.68 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=46.1
Q ss_pred ccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCCceEE
Q 001235 627 VPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPIT 706 (1117)
Q Consensus 627 ~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG~~~~ 706 (1117)
+.+++.|.+|..+.... .+.+|+++.. .+ .+..+++|+.. +... .|...+
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~~--~~--------~~~~al~G~~~----~~~~------~g~~g~ 100 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSMEG--GD--------SDEALINAKSY----VSVR------KGSLGS 100 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCCS--SC--------CHHHHHHCCCE----EEEE------EETTEE
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCcccC--CC--------cHHHHhCCCeE----EEEE------Ecccee
Confidence 47888999998876532 2336665431 11 22345566532 1111 122223
Q ss_pred EEEEEEEeecCCCCEEEEEEEEEccch
Q 001235 707 LIVNACASRDLHDNVVGVCFVAQDITP 733 (1117)
Q Consensus 707 v~v~~~pi~d~~G~v~gv~~v~~DITe 733 (1117)
......|+++++|+++|++.+..++..
T Consensus 101 ~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 101 SLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred eEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 334445999989999999999888764
No 225
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=70.54 E-value=9.4 Score=35.72 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHHHHHHhCCeEEEeccCCccccccc
Q 001235 223 CDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQ 302 (1117)
Q Consensus 223 ~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~v~~~~ 302 (1117)
++.+++-+.+.||+ =|.|- | .-.|+|=+-.+ -.-|+| ..|+...+.....+++.++.+... .++..
T Consensus 4 a~~~AeiI~~~~~~-aV~It--D---~~~ilA~~G~g-~~~~~~-----~~is~~~~~~i~~~k~~~~~~~~~--~~~~~ 69 (123)
T 2w1r_A 4 AKEYADALYDSLGH-SVLIC--D---RDVYIAVSGSS-KKDYLN-----KSISEMLERTMDQRSSVLESDAKS--VQLVN 69 (123)
T ss_dssp HHHHHHHHHHHHCS-EEEEE--C---SSBEEEEESSC-HHHHBT-----CBBCHHHHHHHHHCSCEEESSCEE--EESBT
T ss_pred HHHHHHHHHHHHCC-eEEEE--c---CccEEEEEecC-hhhcCC-----CccCHHHHHHHHcCCEEEEcCCcc--ccccC
Confidence 44556668888998 77664 1 22344433222 223444 467888999999999988855432 11110
Q ss_pred CCCCCCcccccCCcccCCChhHHHHHHhcCceeEEEEEEEEcCCccccCCCcccccccceeeEEeeccCCCCCCchhHHH
Q 001235 303 DEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDEEEEGDNTLPQKRKRLWGLVVCHNTTPRFVPFPLRYA 382 (1117)
Q Consensus 303 ~~~~~~~l~l~~~~lr~~~~~h~~yl~n~~v~asl~~~i~~~~~~~~~~~~~~~~~~~lWGl~~~hh~~p~~~~~~~r~~ 382 (1117)
++ .| ...|.+++||+.+ |+.=|.|.=- +..+.++..++.+
T Consensus 70 ~~-----------------~~--------~~~s~ii~PI~~~--------------g~viG~i~l~-~~~~~~~~~~~~l 109 (123)
T 2w1r_A 70 GI-----------------DE--------DMNSYTVGPIVAN--------------GDPIGAVVIF-SKDQTMGEVEHKA 109 (123)
T ss_dssp TC-----------------EE--------EESEEEEEEEEET--------------TEEEEEEEEE-ESSSCCCHHHHHH
T ss_pred CC-----------------CC--------CeeEEEEEEEEEC--------------CEEEEEEEEE-EcCCCCCHHHHHH
Confidence 00 01 2388999999988 8999988766 6666689999999
Q ss_pred HHHHHHHHHHHHH
Q 001235 383 CEFLAQVFAIHVN 395 (1117)
Q Consensus 383 ~~~l~~~~~~~~~ 395 (1117)
++-++++||.||.
T Consensus 110 a~gla~lls~Qme 122 (123)
T 2w1r_A 110 VETAAGFLARQME 122 (123)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999984
No 226
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=69.45 E-value=42 Score=36.53 Aligned_cols=121 Identities=13% Similarity=0.172 Sum_probs=67.4
Q ss_pred HHHHHHHHHhc-CccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEE
Q 001235 615 TSEMVRLIETA-TVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEI 693 (1117)
Q Consensus 615 ~~~l~~lie~a-~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~ 693 (1117)
...++.+.+.. -..+++.|.+|+++..+... .+...+|.++ .+++ .++.+++++.. ..+.+
T Consensus 101 ~~~L~~~~~~~~~~~i~v~d~~G~viass~~~------~p~~~~g~d~------~~R~----yf~~Al~g~~~--~~~~~ 162 (305)
T 3e4o_A 101 NRKLEALATSAEAAVIYLIDRSGVAVAASNWQ------EPTSFVGNDY------AFRD----YFRLAVRDGMA--EHFAM 162 (305)
T ss_dssp HHHHHHHHHHSSCSEEEEEETTSBEEEETTTT------STTCCTTCBC------TTSH----HHHHHHHHSEE--EEEEE
T ss_pred HHHHHHHHhccCccEEEEECCCCCEEEeCCCc------CcccccCCCc------cccH----HHHHHHhcCCc--EEEEE
Confidence 34444443333 34689999999998764320 0111223222 2344 44555555432 11211
Q ss_pred EeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceee
Q 001235 694 KTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCE 773 (1117)
Q Consensus 694 ~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~ 773 (1117)
....|. +...-+.|+++ +|+++|++++..|+....+. + .. ... .++++|.+|.++.
T Consensus 163 ----~~~tg~--~~i~~a~PV~~-~G~viGVv~v~i~l~~l~~~---~-------~~----~~g---~~~l~D~~G~ii~ 218 (305)
T 3e4o_A 163 ----GTVSKR--PGLYISRRVDG-PGGPLGVIVAKLEFDGVEAD---W-------QA----SGK---PAYVTDRRGIVLI 218 (305)
T ss_dssp ----CTTTCC--EEEEEEEEEEE-TTEEEEEEEEEECCHHHHHH---H-------HH----HTS---CEEEECTTCBEEE
T ss_pred ----ecCCCC--EEEEEEEEEcc-CCeEEEEEEEEEcHHHHHHH---H-------hc----CCc---eEEEEcCCCeEEE
Confidence 122344 34556788887 59999999998888753331 1 11 122 5899999999986
Q ss_pred chhh
Q 001235 774 WNPA 777 (1117)
Q Consensus 774 ~N~a 777 (1117)
.+..
T Consensus 219 ~~~~ 222 (305)
T 3e4o_A 219 TSLP 222 (305)
T ss_dssp ESSG
T ss_pred eCCh
Confidence 6543
No 227
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=66.59 E-value=51 Score=34.08 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCc--cEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcC--Ccceee
Q 001235 614 VTSEMVRLIETATV--PILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQG--QEEQNI 689 (1117)
Q Consensus 614 ~~~~l~~lie~a~~--gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g--~~~~~~ 689 (1117)
....++.+....+. .+++.|.+|+ +..+.. .. ..+ ....+++ .+..++.+ +.. -+
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~s~~------~~---~~~------~~~~~r~----~f~~a~~~~~~~~-~i 114 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDADGQ-LTYASV------KP---VPA------LDNSDRS----YFRYHRANDDHTL-LI 114 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTTSB-EEEESS------SS---EEC------CBCTTSH----HHHHHHHCCCCCC-EE
T ss_pred HHHHHHHHHhcCCccceEEEECCCCC-EecCCC------CC---CCC------CCcccHH----HHHHHHhCCCCCe-EE
Confidence 34556666666665 5899999999 544321 00 011 1223344 34445542 221 11
Q ss_pred EEEEEeeccccCCceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCC-CeeeeCCC
Q 001235 690 QFEIKTHGSKINDDPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIP-PIFGSDEF 768 (1117)
Q Consensus 690 e~~~~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~-~I~~~D~~ 768 (1117)
.-.+.. +..| .|+..-+.|+++.+|++.|++++..|+.. +..++......-. -++++|.+
T Consensus 115 s~p~~~---~~~g--~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~--------------l~~~~~~~~~~~~g~~~l~d~~ 175 (254)
T 3lif_A 115 TGPIQS---RTSG--VWVFVVSRRLETTDGKFFGVVVATIESEY--------------FSTFYKTFDLGPGGSISLLHSD 175 (254)
T ss_dssp EEEEEC---TTTC--CEEEEEEEEEECTTCCEEEEEEEEECHHH--------------HHHHHTTSCCCTTCEEEEEETT
T ss_pred CCceec---CCCC--cEEEEEEeeeeCCCCCEeEEEEEEECHHH--------------HHHHHHhcCcCCCcEEEEEeCC
Confidence 111111 1123 45666788999999999999998777532 2233333321111 37899999
Q ss_pred Cceeechh
Q 001235 769 GWCCEWNP 776 (1117)
Q Consensus 769 g~i~~~N~ 776 (1117)
|.++.-.+
T Consensus 176 G~ii~~~p 183 (254)
T 3lif_A 176 GRLLIQWP 183 (254)
T ss_dssp SBEEEEET
T ss_pred CcEEEECC
Confidence 99987644
No 228
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=65.60 E-value=5.6 Score=51.55 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhccC-C--CCeEEEEEEecccccccccceeEEEEEEeecCCCCChhhhhh--------ccCC----
Q 001235 1007 RLQQVLADFLSISINFVP-N--GGQLMVSSSLTKDQLGQSVHLAYLELRITHAGGGIPEPLLDQ--------MFGS---- 1071 (1117)
Q Consensus 1007 ~L~qVL~nLl~NAik~~~-~--~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~GI~~e~~~~--------iFe~---- 1071 (1117)
-|..++.+++.||++-.- . ...|.|.+...++ .|+|.|||.|||-+..++ +|..
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~-----------sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC-----------EEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 578899999999998532 1 2468887765444 378889999999775432 3322
Q ss_pred --C----CCCC-C-ccccHHHHHHH
Q 001235 1072 --E----GDTS-E-EGISLLISRKL 1088 (1117)
Q Consensus 1072 --f----~~~~-G-tGLGL~ivr~i 1088 (1117)
| +.++ | .|.|.+.|--+
T Consensus 128 gKFd~~~ykvSGGLHGVG~svVNAL 152 (1177)
T 4gfh_A 128 SNYDDDEKKVTGGRNGYGAKLCNIF 152 (1177)
T ss_dssp SCCCCSSCCCCSCCSSCHHHHHHHT
T ss_pred cCcCCCCCeEeccCCChhhhHHhhc
Confidence 2 2222 3 49999988544
No 229
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=59.01 E-value=25 Score=33.48 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=45.5
Q ss_pred ccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCCceEE
Q 001235 627 VPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPIT 706 (1117)
Q Consensus 627 ~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG~~~~ 706 (1117)
+.+++.|.+|..+.... .+.+|+++.. +. ...+++|+.. +... ...++ .
T Consensus 57 ~~i~v~d~~G~~~~~~~----------~~~iG~~~~~---~~--------~~~al~G~~~----~~~~----~~~~g--~ 105 (142)
T 3by8_A 57 LFIVVTDMQSLRYSHPE----------AQRIGQPFKG---DD--------ILKALNGEEN----VAIN----RGFLA--Q 105 (142)
T ss_dssp SEEEEEETTCBBSCCSS----------GGGTTSBCCC---GG--------GTGGGGTCCE----EEEE----CSSSS--C
T ss_pred cEEEEECCCCcEEECCC----------hHHCCCcCCC---CC--------HHHHhCCCeE----EEEe----cCccE--E
Confidence 47889999997765432 3356766541 11 1234555422 1111 11222 2
Q ss_pred EEEEEEEeecCCCCEEEEEEEEEccchhh
Q 001235 707 LIVNACASRDLHDNVVGVCFVAQDITPQK 735 (1117)
Q Consensus 707 v~v~~~pi~d~~G~v~gv~~v~~DITerK 735 (1117)
......|+++++|+++|++.+..++....
T Consensus 106 ~~~~~~PV~~~~g~viGvv~vg~~~~~~~ 134 (142)
T 3by8_A 106 ALRVFTPIYDENHKQIGVVAIGLELSRVT 134 (142)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEHHHHH
T ss_pred EEEEEEeEEcCCCCEEEEEEEeEEHHHHH
Confidence 23334499988999999999988876543
No 230
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=51.98 E-value=2.3e+02 Score=29.73 Aligned_cols=135 Identities=7% Similarity=-0.019 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCCCceEEEEeccCCCCCccCCcCCCCCchHHHH
Q 001235 200 SYKLAAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDDHGEVVSEITKSGLEPYLGLHYPATDIPQAAR 279 (1117)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~g~vvaE~~~~~~~~~lg~~~p~~dip~~~r 279 (1117)
....+...+.+++. ..+.+++. ..+..+.+.+|||+++.+-......+..- +...+ -.+..|....
T Consensus 20 ~~~~l~~~l~~l~~--a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~------~~~~~-----i~~~yp~~W~ 85 (265)
T 3qp6_A 20 QQWTLLEWIHMAGH--IETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQ------RMEKV-----LNVSYPSDWL 85 (265)
T ss_dssp HHHHHHHHHHHHTT--CCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEE------EEEEE-----EESSCCHHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCcccc------cccce-----eecCCcHHHH
Confidence 34456788999998 55888888 55667889999999987655433322110 00011 1245678899
Q ss_pred HHHHhCCeEEEeccCCcccccccCCCCCCcccccCCcccCCChh---HHHHHHhcCceeEEEEEE-EEcCCccccCCCcc
Q 001235 280 FLFMKNKVRMIVDCRARHVKVLQDEKLPFDLTLCGSTLRAPHSC---HLQYMENMNSIASLVMAV-VVNDEEEEGDNTLP 355 (1117)
Q Consensus 280 ~l~~~~~~r~i~d~~~~~v~~~~~~~~~~~l~l~~~~lr~~~~~---h~~yl~n~~v~asl~~~i-~~~~~~~~~~~~~~ 355 (1117)
+.|..+....| . |++.......|+.-+....+..++. -.+..+.+|+...+++|+ .-.
T Consensus 86 ~~Y~~~~y~~~-----D--Pvv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~----------- 147 (265)
T 3qp6_A 86 NQYSQENFAQH-----D--PIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDR----------- 147 (265)
T ss_dssp HHHHHTTGGGT-----C--GGGGCCTTSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSS-----------
T ss_pred HHHHHCcCccc-----C--hHHHHhcCCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcC-----------
Confidence 99998765322 1 2222111334444433222223443 345567999999999999 643
Q ss_pred cccccceeeEEeec
Q 001235 356 QKRKRLWGLVVCHN 369 (1117)
Q Consensus 356 ~~~~~lWGl~~~hh 369 (1117)
+...|++....
T Consensus 148 ---~g~~g~ls~~~ 158 (265)
T 3qp6_A 148 ---NNVGSILSIGG 158 (265)
T ss_dssp ---SSEEEEEEEES
T ss_pred ---CCCEEEEEeec
Confidence 56778776544
No 231
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=45.06 E-value=10 Score=41.74 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=39.4
Q ss_pred EEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHH
Q 001235 629 ILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVK 674 (1117)
Q Consensus 629 i~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~ 674 (1117)
++++|.+++|+.++..+.+++|.+.++++|+++.+++.+.....+.
T Consensus 32 Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~ 77 (327)
T 4e04_A 32 LLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLT 77 (327)
T ss_dssp EEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHH
T ss_pred EEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHH
Confidence 4667888999999999999999999999999999998766555443
No 232
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=44.88 E-value=9.4 Score=44.86 Aligned_cols=39 Identities=8% Similarity=-0.067 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeec
Q 001235 205 AKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFH 245 (1117)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~ 245 (1117)
.+.+.+|.+ +.++.+.+.+.+.++++++++|||.||.++
T Consensus 323 ~~l~~~l~~--~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 323 LALARRARD--ADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHH--HCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHhh--cCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 345666766 568999999999999999999999999986
No 233
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=43.42 E-value=24 Score=32.91 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=20.4
Q ss_pred EEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 846 ECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 846 ~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
.......|+++.+|+++|++++-.++.
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~vg~~l~ 126 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIE 126 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGG
T ss_pred eeEEEEEeEECCCCCEEEEEEEEEEhH
Confidence 444455699998999999998866543
No 234
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=43.27 E-value=2.7e+02 Score=28.27 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=59.7
Q ss_pred ccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeeccccCCceEE
Q 001235 627 VPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKINDDPIT 706 (1117)
Q Consensus 627 ~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~dG~~~~ 706 (1117)
..+++.|.+|.++..+..- ......|.. ...++ .+..+++++.. .+... -...|. +
T Consensus 73 ~~i~i~d~~G~~~~~~~~~------~~~~~~~~~------~~~r~----~~~~a~~~~~~---~~~~~---~~~~g~--~ 128 (260)
T 3by9_A 73 ADTYLIDRFGNTIASSNWN------LDRSFIGRN------FAWRP----YFYLSIAGQKS---QYFAL---GSTSGQ--R 128 (260)
T ss_dssp SEEEEEETTSBEEEETTTT------STTCCTTCB------CTTSH----HHHHHTTTSCE---EEEEE---CTTTCC--E
T ss_pred ceEEEECCCCCEEEecCCC------CCCCccCCc------cccCH----HHHHHHhCCCc---eEEEE---ecCCCC--E
Confidence 3588999999988764210 001111221 11223 44556655432 11111 122343 4
Q ss_pred EEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCCeeeeCCCCceeechh
Q 001235 707 LIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNP 776 (1117)
Q Consensus 707 v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~ 776 (1117)
+..-+.|++ .+|++.|++++..|+..... . +..... -++++|.+|.++.-+.
T Consensus 129 ~i~~~~pi~-~~g~~~Gvv~~~i~l~~l~~---~-----------~~~~~g---~~~l~d~~G~ii~~~~ 180 (260)
T 3by9_A 129 GYYYAYPVI-YAAEILGVIVVKMDLSAIEQ---G-----------WQNKSS---YFVATDDHQVVFMSSQ 180 (260)
T ss_dssp EEEEEEEEE-ETTEEEEEEEEEECSHHHHH---T-----------CCCSSC---EEEEECTTCBEEEESS
T ss_pred EEEEEEEEc-cCCeEEEEEEEEEeHHHHHH---H-----------HhcCCC---cEEEECCCCeEEEcCC
Confidence 555677888 68999999998777654221 1 112222 4789999999987543
No 235
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=42.97 E-value=38 Score=30.07 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=33.9
Q ss_pred HHHHHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccC
Q 001235 618 MVRLIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIG 658 (1117)
Q Consensus 618 l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG 658 (1117)
.+.+..++|+++.+-+....|+|.|.++.++|-.....+-|
T Consensus 22 iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked~~~sg 62 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKEDQPLSG 62 (127)
T ss_dssp HHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCCCGGGC
T ss_pred HHhhhcCCCccEEEecccceEEEecchHHHHhhcccCcccC
Confidence 46788999999999999999999999999997644433333
No 236
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=40.86 E-value=32 Score=34.82 Aligned_cols=95 Identities=9% Similarity=-0.060 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCChhhHhhcchhhhhcCCchhhhhccChhHHHHHHHHHHH
Q 001235 744 IEGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWKREEVIDKLLLAEVFGTNMACCRLKNQEAFVNLGIVLNK 823 (1117)
Q Consensus 744 se~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliGk~l~~ei~~~~~~~~~l~~~d~~~~~~~~l~~ 823 (1117)
....++.+.+..+. +..+++.|.+|.++..+... ..++ . ..++. .+..
T Consensus 56 ~~~~L~~~~~~~~~-~~~i~i~d~~G~~~~~~~~~--~~~~--------~-----------------~~~r~----~f~~ 103 (217)
T 4dah_A 56 MQSILEKTFDSEPR-FSGLYFLNAKGDVTASTTEL--KTKV--------N-----------------LADRS----FFIK 103 (217)
T ss_dssp HHHHHHHHHTTCTT-EEEEEEEETTCBEEEESSCC--SSCC--------B-----------------CTTSH----HHHH
T ss_pred HHHHHHHHHhcCCc-ccEEEEECCCCcEEEecCCC--CCCC--------C-----------------cchhH----HHHH
Confidence 34456666665554 33789999999988765310 0011 0 11111 1223
Q ss_pred HhcCCCCceEeEEEEecCCcEEEEEEEEeeeeCCCCCEEEEEeehhHHH
Q 001235 824 AMSGQDPEKVPFGFFARNGKYAECLLCVNKKLDREGAVTGVFCFLQLAS 872 (1117)
Q Consensus 824 ~l~g~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~i~~DIT 872 (1117)
++..+...-.+...-...|+ ++...+.|+++.+|++.|+++..-+..
T Consensus 104 a~~~~~~~is~~~~~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~ 150 (217)
T 4dah_A 104 AKETKKTVISDSYSSRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQID 150 (217)
T ss_dssp HHHHCSCEECCCEECTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHH
T ss_pred HHhcCCcEEeceEEcCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHH
Confidence 33323333222212223455 667778999998999999999887765
No 237
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=40.09 E-value=1.5e+02 Score=31.21 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHhhhCCCEEEEEeecCCC
Q 001235 204 AAKAITRLQSLPSGSMERLCDTMIQEVFELTGYDRVMAYKFHEDD 248 (1117)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~ 248 (1117)
..++.-+|-. +.+++++++++.+++++..+.|.|-+.=|++.+
T Consensus 105 ~~~l~l~LL~--a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~ 147 (252)
T 3e98_A 105 TRRLVLDLLD--ATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSS 147 (252)
T ss_dssp HHHHHHHHHH--CCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSC
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 3445555555 569999999999999999999999999998765
No 238
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=36.69 E-value=51 Score=39.41 Aligned_cols=94 Identities=10% Similarity=0.049 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhccC--CCCeEEEEEEecccccccccceeEEEEEEeecCC---CCChhhhhh-----------ccCCCC
Q 001235 1010 QVLADFLSISINFVP--NGGQLMVSSSLTKDQLGQSVHLAYLELRITHAGG---GIPEPLLDQ-----------MFGSEG 1073 (1117)
Q Consensus 1010 qVL~nLl~NAik~~~--~~g~I~I~v~~~~~~~~~~~~~~~l~i~V~D~G~---GI~~e~~~~-----------iFe~f~ 1073 (1117)
.++.++|.||+=|.. ..+.|.|.+..-++ . |.|..+|. |++.+.+.. +|....
T Consensus 299 ~aiREal~NAl~HrDY~~~~~i~i~i~~~~d---------r--iei~npG~l~~~~t~e~~~~~~s~RNp~la~~~~~~~ 367 (583)
T 3lmm_A 299 LAVREAMLNAMIHRDWNRSEPIDVRWIELDS---------T--LIVRSPGGFPAAITSENVLSNRAARYPALADLYRALG 367 (583)
T ss_dssp HHHHHHHHHHHHHSCSSSSSCEEEEEETTTT---------E--EEEEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCCCCCEEEEEEecCC---------E--EEEEcCCCCCCCCCHHHhcCCCCCCCHHHHHHHHHhC
Confidence 688999999997753 25678877663355 3 55568884 555544321 111112
Q ss_pred CCCCccccHHHHHHHHHHcCCE-EEEEeeCCeEEEEEEEeccC
Q 001235 1074 DTSEEGISLLISRKLVKLMNGD-VQYLREAGKSTFIVSVELAA 1115 (1117)
Q Consensus 1074 ~~~GtGLGL~ivr~iVe~~gG~-I~v~s~~g~ttF~i~LPl~~ 1115 (1117)
-..+.|-|+.-+.+..+..|.. -.+....+ ..|+++||...
T Consensus 368 ~~e~~GsGi~~i~~~~~~~g~~~P~~~~~~~-~~~~v~l~~~~ 409 (583)
T 3lmm_A 368 LVDKQGVGVDRMYQAMIALGHRPPTIEEIAG-PFVETTLVGGR 409 (583)
T ss_dssp CSCSSHHHHHHHHHHHHHTTCCCCEEEEETT-TEEEEEEECCS
T ss_pred ccccCCcHHHHHHHHHHHcCCCCCeEEEcCC-CEEEEEEeCCC
Confidence 2336688888788877777763 34444333 46777777644
No 239
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=35.02 E-value=80 Score=29.76 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=21.0
Q ss_pred EEEEEeeeeCCCCCEEEEEeehhHHHH
Q 001235 847 CLLCVNKKLDREGAVTGVFCFLQLASH 873 (1117)
Q Consensus 847 v~~~~~pi~d~~G~v~g~v~i~~DITe 873 (1117)
......|+++.+|+++|++++-.+...
T Consensus 106 ~~~~~~PV~~~~g~viGvv~vg~~~~~ 132 (142)
T 3by8_A 106 ALRVFTPIYDENHKQIGVVAIGLELSR 132 (142)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEHHH
T ss_pred EEEEEEeEEcCCCCEEEEEEEeEEHHH
Confidence 344455999888999999998877654
No 240
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=34.82 E-value=19 Score=39.81 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=38.3
Q ss_pred EEEEeC-CCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHH
Q 001235 629 ILAVDV-DGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVK 674 (1117)
Q Consensus 629 i~~~D~-dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~ 674 (1117)
++++|. +++|+.++..+.+++|.++++++|+++.+++.+ ....+.
T Consensus 55 LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~ 100 (343)
T 3s7o_A 55 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQ 100 (343)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHH
T ss_pred EEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHH
Confidence 455776 789999999999999999999999999999887 655443
No 241
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=32.00 E-value=1.8e+02 Score=29.04 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=35.8
Q ss_pred EEEEEEEEeecCC-CCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCC-CeeeeCCCCceeech
Q 001235 706 TLIVNACASRDLH-DNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIP-PIFGSDEFGWCCEWN 775 (1117)
Q Consensus 706 ~v~v~~~pi~d~~-G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~-~I~~~D~~g~i~~~N 775 (1117)
++..-+.|+++.+ |++.|++++..+... +..++......-. -++++|.+|.++.-+
T Consensus 118 ~~i~~~~pi~~~~~g~~~Gvl~~~i~~~~--------------l~~~~~~~~~~~~g~~~l~d~~G~ii~~~ 175 (240)
T 3c8c_A 118 ILVSVATPVKDSATGQFLGSIFYDVSLAE--------------LAELVNEVKLFDAGYVFIVSEDGTTIAHP 175 (240)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEECHHH--------------HHHHHTCSCCTTSEEEEEEETTSBEEECS
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEEEHHH--------------HHHHHHhcccCCceEEEEEcCCCcEEEeC
Confidence 5555677898866 999999988666432 2233333221111 378899999998754
No 242
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=30.14 E-value=3e+02 Score=24.53 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCCCCCCCeeeeCCCCceeechhhHHHhcCCC
Q 001235 745 EGDYKAIVQNPNPLIPPIFGSDEFGWCCEWNPAMVKLTGWK 785 (1117)
Q Consensus 745 e~~l~~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~ 785 (1117)
--..+.+..+.|. ++++.+.+..|++.|.+|.++|-.+
T Consensus 19 iL~iq~iY~nSPV---pVCVRNq~RkilYaN~aF~elF~Ke 56 (127)
T 4ew7_A 19 ILSIQDIYKNSPV---PVCVRNQSRKIIYANGAFIELFSKE 56 (127)
T ss_dssp HHHHHHHHTTCSS---CEEEECTTSCEEEECHHHHHHTTSC
T ss_pred HHhHHhhhcCCCc---cEEEecccceEEEecchHHHHhhcc
Confidence 3345678888888 8999999999999999999997544
No 243
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=29.84 E-value=1.5e+02 Score=31.77 Aligned_cols=135 Identities=10% Similarity=-0.021 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhcCc--cEEEEeCCCcEE-eecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcC--Cc
Q 001235 611 LEAVTSEMVRLIETATV--PILAVDVDGLVN-GWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQG--QE 685 (1117)
Q Consensus 611 L~~~~~~l~~lie~a~~--gi~~~D~dG~I~-~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g--~~ 685 (1117)
.+..++.|..+.++.+. .|.++|.+|+.+ .+|......+-.+.. .+....+++.+ ..+++. +.
T Consensus 62 ~~~l~~~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~p~~--------~l~n~~~R~yf----~~a~~~~~~~ 129 (295)
T 3lid_A 62 LTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSL--------ILRDKSAREYF----KYAQSLDNEQ 129 (295)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEEECS--------CCCBCTTSHHH----HHHHHSCTTC
T ss_pred HHHHHHHHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEcCcc--------ccccchhhHHH----HHHhcCCCCc
Confidence 34555667777776664 488899999744 444321111101111 12233445544 344432 22
Q ss_pred ceeeEEEEEeeccccCC----ceEEEEEEEEEeecCCCCEEEEEEEEEccchhhhhhhhHhhHHHHHHHHHhCCCCCCCC
Q 001235 686 EQNIQFEIKTHGSKIND----DPITLIVNACASRDLHDNVVGVCFVAQDITPQKTVMDKFTRIEGDYKAIVQNPNPLIPP 761 (1117)
Q Consensus 686 ~~~~e~~~~~~~~~~dG----~~~~v~v~~~pi~d~~G~v~gv~~v~~DITerK~aE~~L~~se~~l~~i~~~~~~li~~ 761 (1117)
.....+... ..+| ...++..-+.|+. .+|++.|++++-.|+.... +.+. ...... ..
T Consensus 130 ~~~s~~~~~----~~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~~l~----------~~~~--~~~~~~--~~ 190 (295)
T 3lid_A 130 ISAWGIELE----RDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIEYLS----------SLLN--YSPVRD--FH 190 (295)
T ss_dssp CEECCCEEC----EETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHHHHH----------HHHS--EETTTT--EE
T ss_pred EEEeCceec----ccCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHHHHH----------HHHh--hcccCC--Cc
Confidence 211111111 1112 2345666778886 6899999999877754421 1111 000111 14
Q ss_pred eeeeCCCCceeechh
Q 001235 762 IFGSDEFGWCCEWNP 776 (1117)
Q Consensus 762 I~~~D~~g~i~~~N~ 776 (1117)
++++|.+|.++.-+.
T Consensus 191 ~~l~d~~G~~l~~~~ 205 (295)
T 3lid_A 191 IELVKHKGFYIASPD 205 (295)
T ss_dssp CEEEETTSBEEECSC
T ss_pred EEEEcCCCCEEecCC
Confidence 799999999886543
No 244
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=24.72 E-value=1.2e+02 Score=32.80 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCccEEEEeCCCcEEeecHHHHHHcC
Q 001235 613 AVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTG 650 (1117)
Q Consensus 613 ~~~~~l~~lie~a~~gi~~~D~dG~I~~~N~a~~~l~G 650 (1117)
.....++.+++..+.+-+++|..+.|+.||.++..+|+
T Consensus 96 ~v~p~l~~lLd~l~~PA~V~d~~~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 96 ESLQYLIDMIRNMNVPAFVTDQYVNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHTCSSCEEEEETTCBEEEEEHHHHHHHT
T ss_pred ccCHHHHHHHHhcCCCeEEECCCCCHhhcCHHHHHHhC
Confidence 34566888999998899999999999999999999996
No 245
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=24.14 E-value=2.7e+02 Score=28.43 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=62.5
Q ss_pred HHHhcCccEEEEeCCCcEEeecHHHHHHcCCCcccccCCccccccccCcHHHHHHHHHHHHcCCcceeeEEEEEeecccc
Q 001235 621 LIETATVPILAVDVDGLVNGWNTKIAELTGLSVDKAIGKHFLTLVEDSSIDTVKRMLYLALQGQEEQNIQFEIKTHGSKI 700 (1117)
Q Consensus 621 lie~a~~gi~~~D~dG~I~~~N~a~~~l~G~s~eeliG~~~~dlv~~~~~~~~~~~l~~~l~g~~~~~~e~~~~~~~~~~ 700 (1117)
-.+.+|+--|+.+.+|. .|-++-..++|++..++ ....+++.-+.. |.+... ..
T Consensus 57 ~p~~~pDfRFI~~~~~~--~WdDgNa~FyGi~~~~L-----------------~~L~~~v~~~~~-----Wh~~~~--~s 110 (221)
T 2hje_A 57 DPSHTPEFRFLTDHKGI--IWDDGNAHFYGVNDLIL-----------------DSLANRVSFSNN-----WYYINV--MT 110 (221)
T ss_dssp SGGGCCSEEEEECSSSE--EEECSGGGGGTCCHHHH-----------------HHHHHHCCSSSS-----CEEEEE--EE
T ss_pred CcCCCCcEEEEEeCCce--EEECCCccccccCHHHH-----------------HHHHhhhcccCc-----eEEEEe--cc
Confidence 45668888999988884 46666677788775443 223333332222 222211 34
Q ss_pred CCceEEEEEEEEEeec-CCCCEEEEEEEEEccchhhhhhhhHh
Q 001235 701 NDDPITLIVNACASRD-LHDNVVGVCFVAQDITPQKTVMDKFT 742 (1117)
Q Consensus 701 dG~~~~v~v~~~pi~d-~~G~v~gv~~v~~DITerK~aE~~L~ 742 (1117)
.++.+++.++..|+.| ..|+++|+..++.-.-..--.-+.++
T Consensus 111 ~~g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnnNfslve~l~ 153 (221)
T 2hje_A 111 SIGSRHMLVRRVPILDPSTGEVLGFSFNAVVLDNNFALMEKLK 153 (221)
T ss_dssp TTEEEEEEEEEEEEEETTTTEEEEEEEEEEECTTCHHHHHHHH
T ss_pred CCCceEEEEEccceecCCCCcEEEEEEEEEEecCcHHHHHHHH
Confidence 6899999999999987 57999999888776666555444443
Done!