Query 001236
Match_columns 1117
No_of_seqs 794 out of 3137
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 19:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.9E-45 1.1E-49 411.7 30.5 362 235-625 63-463 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 6.7E-40 1.5E-44 370.3 25.5 332 292-658 58-425 (476)
3 KOG1427 Uncharacterized conser 100.0 2.3E-39 5E-44 343.3 20.4 336 269-626 42-398 (443)
4 KOG1427 Uncharacterized conser 100.0 2.1E-34 4.6E-39 305.7 16.0 309 234-575 71-399 (443)
5 PF08381 BRX: Transcription fa 100.0 4.6E-31 9.9E-36 218.7 7.3 59 1032-1090 1-59 (59)
6 KOG0783 Uncharacterized conser 99.9 1.3E-25 2.7E-30 262.5 15.5 303 297-627 137-449 (1267)
7 KOG0783 Uncharacterized conser 99.9 1.5E-24 3.2E-29 253.6 15.4 305 235-577 137-451 (1267)
8 KOG1428 Inhibitor of type V ad 99.8 7.1E-20 1.5E-24 219.6 24.1 328 237-607 495-872 (3738)
9 KOG1428 Inhibitor of type V ad 99.8 1.8E-19 3.8E-24 216.2 18.7 310 284-631 480-841 (3738)
10 cd01248 PH_PLC Phospholipase C 99.8 2.6E-20 5.7E-25 181.5 9.8 106 17-122 2-115 (115)
11 PF12814 Mcp5_PH: Meiotic cell 99.7 8.1E-17 1.8E-21 158.7 12.6 106 14-124 2-122 (123)
12 KOG0169 Phosphoinositide-speci 99.4 1.7E-13 3.8E-18 163.9 3.0 125 13-137 9-138 (746)
13 PF13713 BRX_N: Transcription 99.3 1.5E-12 3.3E-17 100.1 2.9 32 876-907 1-32 (39)
14 KOG1264 Phospholipase C [Lipid 99.2 1.5E-12 3.3E-17 153.5 -0.4 138 1-138 1-147 (1267)
15 PF00415 RCC1: Regulator of ch 99.1 1.2E-10 2.5E-15 96.7 4.5 50 575-624 1-51 (51)
16 PF01363 FYVE: FYVE zinc finge 99.1 5.5E-11 1.2E-15 105.3 2.3 68 627-694 1-68 (69)
17 KOG0941 E3 ubiquitin protein l 99.0 4.7E-12 1E-16 152.4 -9.1 187 274-524 5-197 (850)
18 KOG1818 Membrane trafficking a 99.0 2E-09 4.2E-14 128.7 12.5 70 625-699 158-227 (634)
19 PF00415 RCC1: Regulator of ch 98.9 1.3E-09 2.8E-14 90.4 5.7 50 301-350 1-51 (51)
20 smart00064 FYVE Protein presen 98.9 9.9E-10 2.1E-14 97.1 3.1 66 627-694 2-67 (68)
21 KOG2999 Regulator of Rac1, req 98.8 3.6E-10 7.8E-15 130.4 -1.0 115 15-129 534-665 (713)
22 KOG0941 E3 ubiquitin protein l 98.8 1.3E-10 2.9E-15 140.0 -7.2 180 389-576 13-197 (850)
23 KOG1729 FYVE finger containing 98.8 1.6E-09 3.5E-14 120.3 0.8 67 626-695 159-226 (288)
24 PTZ00303 phosphatidylinositol 98.7 6E-09 1.3E-13 123.0 3.4 75 624-698 448-534 (1374)
25 PF13540 RCC1_2: Regulator of 98.6 3.8E-08 8.2E-13 72.8 4.4 30 392-421 1-30 (30)
26 PF13540 RCC1_2: Regulator of 98.6 5.2E-08 1.1E-12 72.0 4.8 30 285-314 1-30 (30)
27 KOG1819 FYVE finger-containing 98.6 1.1E-08 2.3E-13 115.9 0.7 71 620-692 886-961 (990)
28 cd00065 FYVE FYVE domain; Zinc 98.4 1.8E-07 4E-12 79.6 2.4 55 635-691 2-56 (57)
29 KOG1842 FYVE finger-containing 97.6 9.8E-06 2.1E-10 92.4 -1.4 68 628-695 173-260 (505)
30 KOG1841 Smad anchor for recept 97.5 2E-05 4.4E-10 98.1 0.5 62 625-689 547-608 (1287)
31 cd01244 PH_RasGAP_CG9209 RAS_G 97.5 0.00062 1.3E-08 64.8 10.2 73 37-121 22-97 (98)
32 KOG1409 Uncharacterized conser 97.4 6.9E-05 1.5E-09 83.5 1.8 80 612-696 254-352 (404)
33 cd01235 PH_SETbf Set binding f 97.2 0.0022 4.8E-08 60.7 10.3 93 26-123 4-101 (101)
34 cd01238 PH_Tec Tec pleckstrin 97.2 0.00086 1.9E-08 64.7 6.6 80 34-121 20-105 (106)
35 cd01266 PH_Gab Gab (Grb2-assoc 96.9 0.0045 9.7E-08 59.9 9.1 82 33-122 17-107 (108)
36 smart00233 PH Pleckstrin homol 96.9 0.0056 1.2E-07 55.8 9.1 91 22-123 3-101 (102)
37 cd01236 PH_outspread Outspread 96.8 0.0057 1.2E-07 58.8 8.9 80 29-121 18-102 (104)
38 PF00169 PH: PH domain; Inter 96.8 0.0083 1.8E-07 55.7 9.8 91 26-123 6-103 (104)
39 KOG1843 Uncharacterized conser 96.8 0.00037 8E-09 79.2 0.7 67 627-694 152-219 (473)
40 cd01265 PH_PARIS-1 PARIS-1 ple 96.7 0.01 2.3E-07 56.0 10.0 83 25-122 3-93 (95)
41 cd01264 PH_melted Melted pleck 96.7 0.0095 2.1E-07 57.0 8.9 75 37-121 20-99 (101)
42 cd01233 Unc104 Unc-104 pleckst 96.6 0.013 2.7E-07 56.0 9.2 93 21-124 3-99 (100)
43 cd00821 PH Pleckstrin homology 96.4 0.012 2.6E-07 53.1 7.6 77 34-121 14-95 (96)
44 cd01219 PH_FGD FGD (faciogenit 96.3 0.025 5.4E-07 54.1 9.7 91 21-124 3-100 (101)
45 cd01247 PH_GPBP Goodpasture an 96.3 0.042 9E-07 51.6 10.6 78 26-120 4-89 (91)
46 cd01220 PH_CDEP Chondrocyte-de 96.2 0.031 6.7E-07 53.4 9.4 87 21-123 3-97 (99)
47 cd01251 PH_centaurin_alpha Cen 95.6 0.09 2E-06 50.5 9.8 88 26-124 4-101 (103)
48 cd01250 PH_centaurin Centaurin 95.3 0.12 2.7E-06 47.7 9.7 32 87-120 61-92 (94)
49 cd00900 PH-like Pleckstrin hom 95.2 0.13 2.9E-06 46.5 9.5 76 34-121 17-98 (99)
50 cd01246 PH_oxysterol_bp Oxyste 95.1 0.13 2.7E-06 47.3 9.0 79 27-121 5-90 (91)
51 cd01256 PH_dynamin Dynamin ple 95.0 0.092 2E-06 49.4 7.5 74 33-119 16-101 (110)
52 KOG3669 Uncharacterized conser 94.9 2.5 5.5E-05 51.0 20.6 69 284-358 228-298 (705)
53 KOG4424 Predicted Rho/Rac guan 94.8 0.0079 1.7E-07 71.7 -0.1 65 632-699 412-477 (623)
54 cd01257 PH_IRS Insulin recepto 94.7 0.23 5E-06 47.7 9.7 81 26-121 7-100 (101)
55 PF11725 AvrE: Pathogenicity f 94.5 1.2 2.6E-05 59.7 18.3 110 500-627 698-814 (1774)
56 cd01241 PH_Akt Akt pleckstrin 94.4 0.22 4.7E-06 47.7 9.0 94 22-122 3-101 (102)
57 PF15409 PH_8: Pleckstrin homo 94.4 0.35 7.6E-06 45.2 9.7 83 26-121 2-87 (89)
58 cd01252 PH_cytohesin Cytohesin 94.1 0.35 7.5E-06 48.0 10.0 88 26-126 5-116 (125)
59 KOG1265 Phospholipase C [Lipid 93.4 0.27 5.9E-06 61.4 9.0 105 17-123 13-134 (1189)
60 cd01260 PH_CNK Connector enhan 93.2 0.54 1.2E-05 44.2 9.1 72 36-121 20-95 (96)
61 KOG1811 Predicted Zn2+-binding 91.4 0.03 6.5E-07 66.6 -2.3 66 626-693 313-383 (1141)
62 PF15413 PH_11: Pleckstrin hom 91.1 1.6 3.4E-05 42.6 9.7 92 27-121 5-111 (112)
63 cd01261 PH_SOS Son of Sevenles 91.1 2.1 4.6E-05 41.9 10.4 94 20-125 4-111 (112)
64 cd01218 PH_phafin2 Phafin2 Pl 89.7 2.2 4.8E-05 41.2 9.2 85 26-125 9-100 (104)
65 cd01245 PH_RasGAP_CG5898 RAS G 89.2 2.3 5E-05 40.6 8.8 75 37-121 17-97 (98)
66 cd01254 PH_PLD Phospholipase D 88.4 2.3 5.1E-05 42.0 8.7 83 37-121 34-120 (121)
67 KOG3669 Uncharacterized conser 88.1 26 0.00056 42.9 18.2 107 290-414 190-299 (705)
68 cd01242 PH_ROK Rok (Rho- assoc 87.4 5.1 0.00011 39.0 9.8 42 82-123 69-110 (112)
69 KOG2059 Ras GTPase-activating 87.3 0.94 2E-05 55.8 6.0 95 21-127 565-668 (800)
70 PLN02153 epithiospecifier prot 85.9 75 0.0016 36.8 23.6 16 568-583 307-322 (341)
71 PF04849 HAP1_N: HAP1 N-termin 85.1 3.7 8E-05 46.8 8.9 60 830-903 224-285 (306)
72 PF12718 Tropomyosin_1: Tropom 84.9 6.6 0.00014 40.2 9.9 61 826-887 16-76 (143)
73 PF07888 CALCOCO1: Calcium bin 84.8 4.5 9.8E-05 49.5 10.0 45 827-871 153-197 (546)
74 PF03904 DUF334: Domain of unk 84.7 6.2 0.00013 42.8 9.9 61 837-899 42-109 (230)
75 PF03962 Mnd1: Mnd1 family; I 84.7 3.2 7E-05 44.3 7.9 66 837-903 61-126 (188)
76 PF08458 PH_2: Plant pleckstri 84.3 7.4 0.00016 37.9 9.3 37 89-125 69-105 (110)
77 PF12325 TMF_TATA_bd: TATA ele 84.3 10 0.00022 37.6 10.6 68 825-903 17-84 (120)
78 PRK09973 putative outer membra 84.0 3.1 6.8E-05 38.5 6.3 42 839-884 25-66 (85)
79 KOG0943 Predicted ubiquitin-pr 83.7 0.18 4E-06 63.8 -2.2 130 282-419 373-507 (3015)
80 cd01237 Unc112 Unc-112 pleckst 83.4 4.3 9.4E-05 39.3 7.3 81 31-121 16-101 (106)
81 PF12718 Tropomyosin_1: Tropom 83.4 10 0.00022 38.8 10.5 73 826-898 37-126 (143)
82 PRK15396 murein lipoprotein; P 83.3 3.6 7.7E-05 37.7 6.3 41 838-882 25-65 (78)
83 KOG2391 Vacuolar sorting prote 82.5 35 0.00075 39.3 15.0 22 832-853 219-240 (365)
84 cd01232 PH_TRIO Trio pleckstri 82.3 6.5 0.00014 38.7 8.2 90 21-124 6-113 (114)
85 KOG0230 Phosphatidylinositol-4 82.3 0.87 1.9E-05 60.3 2.8 48 636-696 6-53 (1598)
86 PF02318 FYVE_2: FYVE-type zin 81.8 0.96 2.1E-05 44.6 2.4 51 634-693 53-104 (118)
87 COG3074 Uncharacterized protei 80.6 6 0.00013 34.9 6.4 41 826-866 27-67 (79)
88 PF02403 Seryl_tRNA_N: Seryl-t 80.5 7.5 0.00016 37.5 8.0 78 825-902 14-96 (108)
89 TIGR02449 conserved hypothetic 80.0 14 0.00031 32.7 8.6 60 840-899 2-61 (65)
90 PF02403 Seryl_tRNA_N: Seryl-t 78.8 13 0.00027 35.9 9.0 69 836-904 34-105 (108)
91 PF02183 HALZ: Homeobox associ 78.3 3.4 7.3E-05 33.8 4.0 31 825-855 13-43 (45)
92 PHA01750 hypothetical protein 77.4 6.2 0.00013 34.4 5.5 37 833-869 37-73 (75)
93 PF11725 AvrE: Pathogenicity f 76.2 8.6 0.00019 52.1 8.9 70 504-576 743-815 (1774)
94 PF10186 Atg14: UV radiation r 76.1 20 0.00043 40.6 11.1 45 825-869 64-108 (302)
95 KOG4693 Uncharacterized conser 76.1 1.1E+02 0.0023 34.5 15.8 25 344-369 80-104 (392)
96 PF11559 ADIP: Afadin- and alp 75.8 30 0.00066 35.4 11.3 47 842-888 70-116 (151)
97 TIGR00414 serS seryl-tRNA synt 75.6 10 0.00023 45.5 9.0 83 823-905 12-101 (418)
98 PF04728 LPP: Lipoprotein leuc 75.6 13 0.00029 31.8 6.9 41 839-883 4-44 (56)
99 cd01253 PH_beta_spectrin Beta- 75.2 24 0.00053 33.4 9.8 34 87-121 70-103 (104)
100 PF07106 TBPIP: Tat binding pr 75.1 6.8 0.00015 41.0 6.4 58 835-904 76-133 (169)
101 PF06428 Sec2p: GDP/GTP exchan 75.0 15 0.00033 35.3 8.1 67 839-905 2-69 (100)
102 PRK05431 seryl-tRNA synthetase 75.0 9.7 0.00021 45.9 8.5 82 823-904 12-97 (425)
103 PRK14161 heat shock protein Gr 74.8 19 0.00042 38.2 9.6 70 824-894 12-81 (178)
104 PF06005 DUF904: Protein of un 74.7 27 0.00058 31.6 9.1 58 828-899 15-72 (72)
105 PTZ00267 NIMA-related protein 74.6 9.2 0.0002 46.6 8.4 92 24-123 380-476 (478)
106 cd01223 PH_Vav Vav pleckstrin 74.2 20 0.00043 35.4 8.8 96 22-124 6-112 (116)
107 KOG3551 Syntrophins (type beta 73.9 8.9 0.00019 44.5 7.2 107 13-123 147-271 (506)
108 KOG1900 Nuclear pore complex, 73.3 3.3E+02 0.0073 37.0 21.7 217 296-531 93-339 (1311)
109 PF10168 Nup88: Nuclear pore c 72.5 36 0.00078 43.9 13.0 79 825-903 537-623 (717)
110 PF04977 DivIC: Septum formati 72.2 10 0.00022 34.1 6.0 42 835-876 21-62 (80)
111 PF11932 DUF3450: Protein of u 71.5 41 0.00089 37.5 12.0 34 835-868 53-86 (251)
112 PF10211 Ax_dynein_light: Axon 71.3 23 0.0005 38.0 9.4 34 837-870 126-159 (189)
113 PF11559 ADIP: Afadin- and alp 71.0 44 0.00095 34.2 11.1 57 835-898 56-112 (151)
114 PRK11637 AmiB activator; Provi 70.7 27 0.00058 42.2 11.0 34 837-870 60-93 (428)
115 cd01222 PH_clg Clg (common-sit 70.7 10 0.00022 36.3 5.8 37 87-123 58-95 (97)
116 PF13863 DUF4200: Domain of un 70.1 55 0.0012 32.3 11.3 73 830-902 24-96 (126)
117 TIGR03752 conj_TIGR03752 integ 69.7 32 0.00069 41.6 10.9 67 837-903 72-139 (472)
118 PF04111 APG6: Autophagy prote 69.3 38 0.00082 39.3 11.3 96 835-939 54-160 (314)
119 PF14197 Cep57_CLD_2: Centroso 69.2 59 0.0013 29.2 9.9 61 836-899 3-66 (69)
120 PRK14160 heat shock protein Gr 69.0 35 0.00075 37.2 10.1 68 826-894 56-123 (211)
121 cd01228 PH_BCR-related BCR (br 68.8 15 0.00032 34.9 6.2 81 21-123 3-94 (96)
122 KOG1029 Endocytic adaptor prot 68.3 21 0.00045 44.9 9.0 51 819-869 467-517 (1118)
123 PRK11637 AmiB activator; Provi 68.2 34 0.00073 41.3 11.1 20 846-865 62-81 (428)
124 KOG2106 Uncharacterized conser 66.6 3.1E+02 0.0068 33.6 20.6 87 287-413 216-303 (626)
125 cd01259 PH_Apbb1ip Apbb1ip (Am 66.6 19 0.0004 35.3 6.7 94 23-123 3-108 (114)
126 PF15619 Lebercilin: Ciliary p 66.3 47 0.001 35.8 10.5 65 839-903 119-187 (194)
127 KOG0977 Nuclear envelope prote 66.2 26 0.00057 43.2 9.4 77 823-899 98-174 (546)
128 COG0576 GrpE Molecular chapero 66.2 34 0.00073 36.9 9.4 61 833-894 38-98 (193)
129 TIGR00414 serS seryl-tRNA synt 66.2 30 0.00065 41.7 10.0 71 835-905 34-108 (418)
130 PLN02678 seryl-tRNA synthetase 65.1 24 0.00053 42.8 8.9 83 822-904 15-102 (448)
131 PF06785 UPF0242: Uncharacteri 64.7 22 0.00048 40.6 7.8 50 827-876 130-179 (401)
132 PHA03098 kelch-like protein; P 64.7 1.1E+02 0.0025 37.7 15.1 17 345-362 335-351 (534)
133 KOG4603 TBP-1 interacting prot 64.6 25 0.00054 36.6 7.4 33 835-867 83-115 (201)
134 KOG4441 Proteins containing BT 64.5 1.4E+02 0.0031 37.6 15.8 56 519-583 471-530 (571)
135 PRK14143 heat shock protein Gr 64.2 40 0.00087 37.5 9.7 64 830-894 66-129 (238)
136 PRK14155 heat shock protein Gr 63.9 31 0.00067 37.6 8.6 39 834-872 16-54 (208)
137 PF04156 IncA: IncA protein; 63.7 72 0.0016 33.8 11.4 16 837-852 94-109 (191)
138 PLN02153 epithiospecifier prot 63.6 2.8E+02 0.0061 32.0 20.4 17 345-362 25-41 (341)
139 KOG1274 WD40 repeat protein [G 63.4 85 0.0018 40.6 13.2 73 341-419 12-88 (933)
140 PF05278 PEARLI-4: Arabidopsis 63.4 58 0.0013 36.7 10.7 67 839-905 167-239 (269)
141 PRK14153 heat shock protein Gr 63.2 29 0.00064 37.3 8.1 68 826-894 26-95 (194)
142 KOG4657 Uncharacterized conser 62.9 32 0.00069 37.4 8.2 57 826-882 71-140 (246)
143 PRK14148 heat shock protein Gr 62.8 48 0.001 35.8 9.6 64 830-894 39-102 (195)
144 PF09728 Taxilin: Myosin-like 62.7 51 0.0011 38.1 10.6 69 836-904 133-219 (309)
145 PF06092 DUF943: Enterobacteri 62.6 4.5 9.7E-05 41.9 1.8 27 1069-1095 51-77 (157)
146 cd01227 PH_Dbs Dbs (DBL's big 62.6 76 0.0017 32.2 10.5 38 86-123 78-115 (133)
147 cd01230 PH_EFA6 EFA6 Pleckstri 62.5 50 0.0011 32.7 9.0 38 85-123 74-111 (117)
148 KOG0315 G-protein beta subunit 62.5 2.7E+02 0.0058 31.4 15.7 156 335-532 84-245 (311)
149 KOG2264 Exostosin EXT1L [Signa 62.3 62 0.0013 39.5 11.2 75 826-907 81-155 (907)
150 PRK14154 heat shock protein Gr 62.1 40 0.00087 36.7 9.0 58 836-894 57-114 (208)
151 KOG0982 Centrosomal protein Nu 62.1 55 0.0012 38.8 10.4 78 826-903 299-390 (502)
152 cd01224 PH_Collybistin Collybi 62.1 53 0.0012 32.1 8.9 87 27-120 8-104 (109)
153 PF15406 PH_6: Pleckstrin homo 62.1 18 0.0004 35.1 5.6 66 40-121 41-111 (112)
154 PRK15422 septal ring assembly 61.9 28 0.0006 31.9 6.4 38 826-863 27-64 (79)
155 PF07569 Hira: TUP1-like enhan 61.5 29 0.00062 38.1 8.0 29 334-362 12-40 (219)
156 PHA03098 kelch-like protein; P 60.8 3.4E+02 0.0075 33.5 18.3 14 349-362 290-303 (534)
157 KOG4403 Cell surface glycoprot 60.7 50 0.0011 39.1 9.8 70 833-902 304-419 (575)
158 PF01486 K-box: K-box region; 60.5 54 0.0012 31.3 8.7 65 832-898 13-86 (100)
159 PF07888 CALCOCO1: Calcium bin 60.2 61 0.0013 40.1 11.0 39 826-864 159-197 (546)
160 KOG0241 Kinesin-like protein [ 60.1 35 0.00075 44.0 8.9 75 827-904 360-435 (1714)
161 PRK14156 heat shock protein Gr 59.8 41 0.00089 35.7 8.4 58 836-894 32-89 (177)
162 PF07569 Hira: TUP1-like enhan 59.8 36 0.00079 37.3 8.4 78 504-583 12-94 (219)
163 PF10422 LRS4: Monopolin compl 59.6 3 6.5E-05 45.7 0.0 63 832-897 52-114 (249)
164 PF03961 DUF342: Protein of un 59.6 31 0.00067 41.9 8.7 70 836-905 332-407 (451)
165 KOG0943 Predicted ubiquitin-pr 59.2 9 0.0002 49.7 3.9 78 505-582 374-454 (3015)
166 PF09304 Cortex-I_coil: Cortex 58.6 1.1E+02 0.0024 29.8 10.1 51 823-873 22-72 (107)
167 PF13851 GAS: Growth-arrest sp 58.5 77 0.0017 34.4 10.5 69 827-899 37-105 (201)
168 PRK14139 heat shock protein Gr 58.4 58 0.0013 34.9 9.3 59 834-893 35-93 (185)
169 PRK14162 heat shock protein Gr 58.2 56 0.0012 35.2 9.2 60 834-894 42-101 (194)
170 PRK05431 seryl-tRNA synthetase 57.5 54 0.0012 39.6 10.1 71 836-906 33-106 (425)
171 PF14662 CCDC155: Coiled-coil 57.5 71 0.0015 34.2 9.6 45 825-869 9-53 (193)
172 KOG1760 Molecular chaperone Pr 56.7 78 0.0017 31.4 8.9 65 835-899 34-117 (131)
173 PRK09039 hypothetical protein; 56.7 72 0.0016 37.5 10.7 38 837-874 136-173 (343)
174 PRK14163 heat shock protein Gr 56.7 84 0.0018 34.4 10.3 37 834-870 43-79 (214)
175 PRK14158 heat shock protein Gr 56.7 68 0.0015 34.6 9.5 62 832-894 41-102 (194)
176 cd01239 PH_PKD Protein kinase 56.6 63 0.0014 31.9 8.3 90 26-120 5-115 (117)
177 COG2433 Uncharacterized conser 56.5 64 0.0014 40.0 10.2 24 558-581 245-269 (652)
178 COG1579 Zn-ribbon protein, pos 56.5 96 0.0021 34.5 10.8 70 835-907 107-176 (239)
179 PF03908 Sec20: Sec20; InterP 56.5 98 0.0021 29.0 9.6 63 822-895 3-65 (92)
180 PLN02320 seryl-tRNA synthetase 56.3 55 0.0012 40.3 9.8 82 822-903 76-160 (502)
181 KOG0315 G-protein beta subunit 56.1 3.4E+02 0.0074 30.6 19.5 107 285-416 88-196 (311)
182 PF04156 IncA: IncA protein; 55.8 73 0.0016 33.8 9.8 62 839-900 89-150 (191)
183 PRK02119 hypothetical protein; 55.6 48 0.001 30.0 6.9 33 838-870 2-34 (73)
184 KOG0612 Rho-associated, coiled 55.5 53 0.0012 43.7 9.8 48 859-906 487-534 (1317)
185 PF10186 Atg14: UV radiation r 55.2 92 0.002 35.1 11.1 44 826-869 72-115 (302)
186 PF15035 Rootletin: Ciliary ro 55.1 35 0.00077 36.4 7.1 44 827-870 91-134 (182)
187 PRK14141 heat shock protein Gr 55.1 55 0.0012 35.7 8.6 57 836-893 36-92 (209)
188 PRK00888 ftsB cell division pr 54.4 35 0.00077 33.0 6.4 32 835-866 31-62 (105)
189 PF04728 LPP: Lipoprotein leuc 54.3 53 0.0011 28.3 6.5 36 835-870 7-42 (56)
190 TIGR03752 conj_TIGR03752 integ 54.1 67 0.0014 39.0 9.8 75 825-902 64-145 (472)
191 PHA02713 hypothetical protein; 53.8 1.2E+02 0.0026 38.0 12.7 20 343-362 341-360 (557)
192 PF11068 YlqD: YlqD protein; 53.8 1.2E+02 0.0027 30.6 10.2 66 841-907 23-93 (131)
193 PF01519 DUF16: Protein of unk 53.6 68 0.0015 30.9 7.8 48 842-903 50-97 (102)
194 TIGR03185 DNA_S_dndD DNA sulfu 53.1 74 0.0016 40.7 10.8 34 837-870 434-467 (650)
195 PRK10869 recombination and rep 53.1 48 0.001 41.5 9.0 20 881-900 368-387 (553)
196 PF10883 DUF2681: Protein of u 53.0 56 0.0012 30.7 7.1 51 837-893 29-79 (87)
197 KOG4196 bZIP transcription fac 52.9 38 0.00082 33.8 6.2 27 827-853 77-103 (135)
198 PRK14151 heat shock protein Gr 52.8 70 0.0015 34.0 8.8 59 835-894 24-82 (176)
199 PF13815 Dzip-like_N: Iguana/D 52.5 33 0.00071 33.9 6.0 43 826-868 68-110 (118)
200 PF10168 Nup88: Nuclear pore c 52.5 60 0.0013 41.9 9.8 62 842-904 590-656 (717)
201 PF10473 CENP-F_leu_zip: Leuci 52.2 1.5E+02 0.0033 30.3 10.7 67 835-901 63-140 (140)
202 PRK03564 formate dehydrogenase 52.2 8.9 0.00019 44.1 2.2 75 615-698 192-267 (309)
203 COG0497 RecN ATPase involved i 51.8 56 0.0012 40.6 8.9 48 851-900 341-388 (557)
204 PF05957 DUF883: Bacterial pro 51.7 1.2E+02 0.0026 28.5 9.4 42 836-877 3-45 (94)
205 PRK10884 SH3 domain-containing 51.6 78 0.0017 34.5 9.1 29 835-863 97-125 (206)
206 PHA02713 hypothetical protein; 51.3 2E+02 0.0044 36.1 14.1 17 401-417 344-360 (557)
207 PF11932 DUF3450: Protein of u 51.3 1.2E+02 0.0026 33.8 11.0 31 838-868 49-79 (251)
208 PRK14131 N-acetylneuraminic ac 51.3 3.3E+02 0.0071 32.1 15.3 214 344-582 75-350 (376)
209 PF00038 Filament: Intermediat 50.8 1E+02 0.0022 35.3 10.7 69 826-894 63-138 (312)
210 PRK14154 heat shock protein Gr 50.8 1.4E+02 0.0031 32.5 10.8 79 827-905 62-152 (208)
211 PRK13729 conjugal transfer pil 50.6 1.2E+02 0.0027 36.8 11.3 49 1036-1091 293-341 (475)
212 PF13851 GAS: Growth-arrest sp 50.6 1.6E+02 0.0034 32.0 11.3 78 827-904 89-174 (201)
213 PRK14140 heat shock protein Gr 50.5 98 0.0021 33.3 9.5 58 836-894 42-99 (191)
214 PF07407 Seadorna_VP6: Seadorn 49.5 50 0.0011 37.8 7.3 25 828-852 36-60 (420)
215 KOG1729 FYVE finger containing 49.4 6.2 0.00013 44.9 0.3 65 628-692 13-81 (288)
216 PF10267 Tmemb_cc2: Predicted 49.4 2.5E+02 0.0053 33.8 13.4 23 837-859 218-240 (395)
217 PF05377 FlaC_arch: Flagella a 49.1 68 0.0015 27.5 6.3 39 836-874 5-43 (55)
218 PF15358 TSKS: Testis-specific 49.0 97 0.0021 36.5 9.6 60 816-875 117-179 (558)
219 KOG4552 Vitamin-D-receptor int 49.0 77 0.0017 34.1 8.1 52 839-893 68-119 (272)
220 PF07798 DUF1640: Protein of u 48.9 80 0.0017 33.4 8.6 59 846-904 74-137 (177)
221 PRK14146 heat shock protein Gr 48.7 83 0.0018 34.5 8.8 60 834-894 57-116 (215)
222 PF12325 TMF_TATA_bd: TATA ele 48.6 2E+02 0.0042 28.8 10.6 57 827-883 40-99 (120)
223 PRK14147 heat shock protein Gr 48.6 86 0.0019 33.2 8.6 57 836-893 23-79 (172)
224 PF08317 Spc7: Spc7 kinetochor 48.5 60 0.0013 37.8 8.3 59 839-901 231-290 (325)
225 PF10458 Val_tRNA-synt_C: Valy 48.4 41 0.00089 29.6 5.3 55 845-899 4-65 (66)
226 PF01025 GrpE: GrpE; InterPro 48.1 32 0.0007 35.6 5.5 71 831-903 11-81 (165)
227 PF04899 MbeD_MobD: MbeD/MobD 48.1 43 0.00093 30.1 5.3 39 827-865 31-69 (70)
228 PF13935 Ead_Ea22: Ead/Ea22-li 48.1 1.1E+02 0.0024 31.0 9.2 59 835-893 71-132 (139)
229 COG1842 PspA Phage shock prote 48.1 1.2E+02 0.0025 33.6 9.9 55 838-894 45-99 (225)
230 smart00502 BBC B-Box C-termina 47.8 2.4E+02 0.0053 27.0 11.4 45 826-870 9-53 (127)
231 PF07798 DUF1640: Protein of u 47.7 83 0.0018 33.3 8.5 54 825-878 85-146 (177)
232 PRK00409 recombination and DNA 47.6 1.1E+02 0.0025 39.9 11.3 17 1043-1059 731-747 (782)
233 KOG0993 Rab5 GTPase effector R 47.6 1.9 4.1E-05 49.9 -4.0 64 628-695 461-526 (542)
234 TIGR01035 hemA glutamyl-tRNA r 47.4 62 0.0014 39.0 8.5 75 828-902 314-400 (417)
235 TIGR01069 mutS2 MutS2 family p 47.3 1.1E+02 0.0024 40.0 11.1 24 839-862 533-556 (771)
236 COG3599 DivIVA Cell division i 47.2 1.4E+02 0.003 32.8 10.1 67 829-901 35-106 (212)
237 KOG0230 Phosphatidylinositol-4 47.0 8.1 0.00017 51.8 0.9 34 630-665 92-125 (1598)
238 PF06364 DUF1068: Protein of u 46.6 71 0.0015 33.3 7.3 28 861-888 105-135 (176)
239 PF09304 Cortex-I_coil: Cortex 46.6 2.4E+02 0.0053 27.5 10.3 56 823-879 29-84 (107)
240 PF04899 MbeD_MobD: MbeD/MobD 46.3 1.7E+02 0.0038 26.4 8.8 60 841-903 6-65 (70)
241 PRK14144 heat shock protein Gr 46.2 1E+02 0.0022 33.4 8.8 58 836-894 50-107 (199)
242 COG3166 PilN Tfp pilus assembl 46.1 72 0.0016 34.7 7.8 66 825-908 49-117 (206)
243 KOG4460 Nuclear pore complex, 45.9 1.4E+02 0.0031 36.5 10.6 57 846-902 589-645 (741)
244 PRK12472 hypothetical protein; 45.9 83 0.0018 38.2 8.8 46 825-870 205-250 (508)
245 PF03904 DUF334: Domain of unk 45.8 1.5E+02 0.0033 32.6 9.9 80 825-905 44-138 (230)
246 PLN02678 seryl-tRNA synthetase 45.8 79 0.0017 38.5 8.9 70 836-905 38-110 (448)
247 KOG3067 Translin family protei 45.5 62 0.0013 34.4 6.8 61 841-908 23-83 (226)
248 KOG0971 Microtubule-associated 45.4 3.5E+02 0.0076 35.4 14.2 14 611-624 55-68 (1243)
249 PF07851 TMPIT: TMPIT-like pro 45.3 1.1E+02 0.0024 35.6 9.6 31 876-906 64-94 (330)
250 TIGR02894 DNA_bind_RsfA transc 45.1 85 0.0018 32.7 7.6 31 838-868 104-134 (161)
251 PF12777 MT: Microtubule-bindi 45.0 1.2E+02 0.0027 35.5 10.2 33 829-862 7-39 (344)
252 PF05103 DivIVA: DivIVA protei 44.9 6.3 0.00014 39.1 -0.4 24 835-858 29-52 (131)
253 TIGR01069 mutS2 MutS2 family p 44.8 1.3E+02 0.0028 39.3 11.2 16 864-879 555-570 (771)
254 KOG0930 Guanine nucleotide exc 44.5 79 0.0017 35.6 7.7 103 22-125 261-377 (395)
255 COG2433 Uncharacterized conser 44.5 1.2E+02 0.0027 37.7 10.0 40 840-879 431-470 (652)
256 KOG4797 Transcriptional regula 44.5 84 0.0018 30.4 6.8 45 837-897 66-110 (123)
257 PRK14145 heat shock protein Gr 44.4 1.4E+02 0.003 32.3 9.5 61 833-894 47-107 (196)
258 KOG0649 WD40 repeat protein [G 44.1 5.1E+02 0.011 29.1 18.8 77 283-360 63-142 (325)
259 PF04762 IKI3: IKI3 family; I 44.0 7.5E+02 0.016 33.3 18.1 48 515-584 592-639 (928)
260 PF09738 DUF2051: Double stran 44.0 2.9E+02 0.0063 32.0 12.6 75 823-904 80-164 (302)
261 PF07200 Mod_r: Modifier of ru 44.0 2E+02 0.0044 29.3 10.5 50 824-873 34-83 (150)
262 PRK14157 heat shock protein Gr 43.9 1E+02 0.0022 34.1 8.5 59 834-893 80-138 (227)
263 PRK08475 F0F1 ATP synthase sub 43.9 2.6E+02 0.0056 29.3 11.4 52 827-881 49-103 (167)
264 PF06632 XRCC4: DNA double-str 43.6 2E+02 0.0044 33.8 11.5 44 829-872 128-171 (342)
265 COG4026 Uncharacterized protei 43.5 1.8E+02 0.0039 31.7 10.0 76 833-908 114-194 (290)
266 PF08317 Spc7: Spc7 kinetochor 43.4 1.1E+02 0.0024 35.6 9.4 25 846-870 178-202 (325)
267 PF03962 Mnd1: Mnd1 family; I 43.3 95 0.0021 33.3 8.1 35 821-855 59-93 (188)
268 PF02646 RmuC: RmuC family; I 43.2 1.5E+02 0.0032 34.3 10.3 32 871-902 133-164 (304)
269 PF05622 HOOK: HOOK protein; 42.8 8.1 0.00018 49.7 0.0 78 826-903 276-379 (713)
270 smart00787 Spc7 Spc7 kinetocho 42.8 79 0.0017 36.7 7.9 26 838-863 218-243 (312)
271 PF04508 Pox_A_type_inc: Viral 42.4 25 0.00053 24.8 2.3 18 838-855 1-18 (23)
272 PRK13729 conjugal transfer pil 42.4 52 0.0011 39.9 6.5 20 884-903 108-127 (475)
273 PF00038 Filament: Intermediat 42.4 2.2E+02 0.0048 32.5 11.7 65 830-894 46-110 (312)
274 COG1340 Uncharacterized archae 42.3 2.2E+02 0.0049 32.6 11.1 32 870-901 211-242 (294)
275 KOG0291 WD40-repeat-containing 42.2 8.9E+02 0.019 31.4 23.0 120 285-419 300-424 (893)
276 PRK14164 heat shock protein Gr 42.1 1.1E+02 0.0023 33.7 8.4 56 838-894 77-132 (218)
277 smart00338 BRLZ basic region l 42.1 70 0.0015 27.9 5.8 34 835-868 30-63 (65)
278 TIGR02338 gimC_beta prefoldin, 41.8 2.2E+02 0.0048 27.6 9.8 35 836-870 8-42 (110)
279 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.5 2.4E+02 0.0053 28.3 10.4 35 835-869 14-48 (132)
280 COG1340 Uncharacterized archae 41.3 1.9E+02 0.004 33.2 10.3 77 826-907 202-278 (294)
281 PF03310 Cauli_DNA-bind: Cauli 41.2 1.1E+02 0.0023 30.5 7.3 22 875-896 50-71 (121)
282 PF09744 Jnk-SapK_ap_N: JNK_SA 41.1 1.4E+02 0.003 31.3 8.6 29 834-862 85-113 (158)
283 PRK14161 heat shock protein Gr 41.1 1.4E+02 0.003 31.9 8.8 53 826-878 7-59 (178)
284 PHA02047 phage lambda Rz1-like 40.9 1.6E+02 0.0034 28.1 7.9 25 846-870 35-59 (101)
285 PRK00409 recombination and DNA 40.9 1.5E+02 0.0032 38.9 10.8 9 109-117 40-48 (782)
286 KOG4441 Proteins containing BT 40.8 1.8E+02 0.0039 36.7 11.3 22 510-531 509-530 (571)
287 KOG1090 Predicted dual-specifi 40.7 21 0.00045 46.0 3.0 79 33-123 1648-1731(1732)
288 KOG0804 Cytoplasmic Zn-finger 40.5 1.8E+02 0.0039 35.0 10.3 44 827-870 350-400 (493)
289 PF06102 DUF947: Domain of unk 40.4 1.3E+02 0.0029 31.6 8.5 43 829-871 54-98 (168)
290 PRK00591 prfA peptide chain re 40.3 1.7E+02 0.0036 34.7 10.1 66 837-910 38-110 (359)
291 PF06005 DUF904: Protein of un 40.3 1.3E+02 0.0027 27.4 7.1 23 842-864 8-30 (72)
292 TIGR02977 phageshock_pspA phag 39.8 1.8E+02 0.0039 31.8 9.9 42 839-880 46-87 (219)
293 COG4345 Uncharacterized protei 39.6 1.1E+02 0.0024 31.9 7.4 51 848-898 121-171 (181)
294 PRK10698 phage shock protein P 39.5 1.8E+02 0.004 31.9 9.9 42 839-880 46-87 (222)
295 smart00787 Spc7 Spc7 kinetocho 39.5 2.6E+02 0.0055 32.5 11.4 45 826-870 174-229 (312)
296 PF14643 DUF4455: Domain of un 39.5 1E+02 0.0022 37.8 8.7 49 853-907 80-128 (473)
297 PF14362 DUF4407: Domain of un 39.4 1.9E+02 0.0041 33.1 10.4 63 843-905 133-207 (301)
298 PF10805 DUF2730: Protein of u 39.4 2E+02 0.0042 28.0 8.9 66 837-902 34-101 (106)
299 PF10211 Ax_dynein_light: Axon 39.3 2E+02 0.0044 30.8 9.9 31 840-870 122-152 (189)
300 COG4238 Murein lipoprotein [Ce 39.3 1.1E+02 0.0024 27.8 6.4 44 837-884 24-67 (78)
301 PF04111 APG6: Autophagy prote 39.3 2.4E+02 0.0052 32.7 11.2 36 835-870 47-82 (314)
302 PF00261 Tropomyosin: Tropomyo 39.2 2.7E+02 0.0059 30.8 11.3 65 835-900 124-189 (237)
303 COG4257 Vgb Streptogramin lyas 39.2 2.7E+02 0.0059 31.8 10.8 140 229-414 60-205 (353)
304 PF00261 Tropomyosin: Tropomyo 39.1 58 0.0013 36.1 6.0 36 837-872 28-63 (237)
305 COG1842 PspA Phage shock prote 38.9 1.9E+02 0.004 32.1 9.7 46 828-873 96-141 (225)
306 PF07160 DUF1395: Protein of u 38.7 2E+02 0.0043 32.2 10.0 70 838-907 6-80 (243)
307 TIGR01063 gyrA DNA gyrase, A s 38.7 1.1E+03 0.023 31.3 21.0 212 342-585 544-770 (800)
308 PF09006 Surfac_D-trimer: Lung 38.7 70 0.0015 26.4 4.6 24 842-865 3-26 (46)
309 KOG0976 Rho/Rac1-interacting s 38.2 1.6E+02 0.0036 37.6 9.8 67 834-907 95-161 (1265)
310 KOG3478 Prefoldin subunit 6, K 37.8 86 0.0019 30.5 5.9 46 826-871 71-116 (120)
311 PF07200 Mod_r: Modifier of ru 37.8 2.6E+02 0.0057 28.4 10.2 46 828-873 45-90 (150)
312 KOG0278 Serine/threonine kinas 37.6 3E+02 0.0065 30.9 10.7 39 323-362 133-173 (334)
313 PRK13979 DNA topoisomerase IV 37.4 1.2E+03 0.026 31.5 24.6 115 293-419 517-641 (957)
314 PF15035 Rootletin: Ciliary ro 37.3 2E+02 0.0043 30.8 9.3 58 827-884 5-78 (182)
315 PF04841 Vps16_N: Vps16, N-ter 37.3 8.1E+02 0.018 29.5 18.8 69 284-360 82-153 (410)
316 TIGR01562 FdhE formate dehydro 37.2 18 0.00038 41.7 1.6 75 615-698 189-267 (305)
317 KOG0239 Kinesin (KAR3 subfamil 37.2 1.8E+02 0.0038 37.4 10.4 74 829-902 239-315 (670)
318 PF07246 Phlebovirus_NSM: Phle 37.1 1.1E+02 0.0023 34.5 7.5 19 885-903 214-232 (264)
319 PF04841 Vps16_N: Vps16, N-ter 36.9 8.2E+02 0.018 29.4 16.7 26 557-582 217-244 (410)
320 PF04102 SlyX: SlyX; InterPro 36.9 1.9E+02 0.0042 25.7 7.8 48 844-905 3-50 (69)
321 KOG2106 Uncharacterized conser 36.7 9.1E+02 0.02 29.9 16.6 60 338-417 215-275 (626)
322 smart00030 CLb CLUSTERIN Beta 36.6 1.2E+02 0.0025 32.7 7.3 55 835-889 19-80 (206)
323 TIGR03548 mutarot_permut cycli 36.5 7E+02 0.015 28.5 15.7 17 345-362 116-132 (323)
324 PF04012 PspA_IM30: PspA/IM30 36.0 2.1E+02 0.0046 31.1 9.7 42 839-880 45-86 (221)
325 PRK13454 F0F1 ATP synthase sub 35.9 3.7E+02 0.008 28.6 11.2 19 838-856 72-90 (181)
326 PF12777 MT: Microtubule-bindi 35.9 2.2E+02 0.0048 33.4 10.5 43 837-879 21-63 (344)
327 PF12329 TMF_DNA_bd: TATA elem 35.8 1.8E+02 0.0038 26.5 7.4 22 847-868 35-56 (74)
328 PF13815 Dzip-like_N: Iguana/D 35.8 1.3E+02 0.0027 29.8 7.1 34 837-870 72-105 (118)
329 cd00632 Prefoldin_beta Prefold 35.8 1.2E+02 0.0026 29.2 6.8 42 829-870 61-102 (105)
330 PF03310 Cauli_DNA-bind: Cauli 35.6 1.3E+02 0.0029 29.9 7.0 28 838-865 6-33 (121)
331 PF11853 DUF3373: Protein of u 35.5 33 0.00071 41.9 3.5 33 837-870 24-56 (489)
332 PF05529 Bap31: B-cell recepto 35.5 75 0.0016 33.9 6.0 12 889-900 177-188 (192)
333 TIGR02169 SMC_prok_A chromosom 35.4 1.9E+02 0.004 39.3 11.2 6 91-96 25-30 (1164)
334 PF13870 DUF4201: Domain of un 35.4 2.1E+02 0.0046 30.0 9.3 34 840-873 44-77 (177)
335 cd01240 PH_beta-ARK Beta adren 35.4 64 0.0014 31.5 4.7 75 37-123 21-98 (116)
336 KOG3751 Growth factor receptor 35.3 85 0.0018 38.3 6.7 92 23-123 320-424 (622)
337 PRK04325 hypothetical protein; 35.3 1.6E+02 0.0034 26.8 7.0 26 843-868 7-32 (74)
338 PF07321 YscO: Type III secret 35.3 2.5E+02 0.0055 29.1 9.4 61 837-897 66-129 (152)
339 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.2 4.4E+02 0.0096 26.4 11.1 64 835-898 7-70 (132)
340 PF09969 DUF2203: Uncharacteri 35.1 91 0.002 31.0 6.0 27 829-855 5-37 (120)
341 PTZ00446 vacuolar sorting prot 35.0 1E+02 0.0022 33.2 6.7 29 837-865 26-54 (191)
342 KOG4424 Predicted Rho/Rac guan 34.7 76 0.0016 39.2 6.2 104 17-127 269-373 (623)
343 PF10473 CENP-F_leu_zip: Leuci 34.7 2.8E+02 0.006 28.5 9.4 38 838-875 10-47 (140)
344 PF04216 FdhE: Protein involve 34.6 13 0.00029 42.4 0.1 76 615-697 177-252 (290)
345 PF00170 bZIP_1: bZIP transcri 34.6 1.2E+02 0.0025 26.5 5.9 25 839-863 34-58 (64)
346 PF10498 IFT57: Intra-flagella 34.6 2.6E+02 0.0057 33.1 10.7 47 859-905 266-312 (359)
347 PF06156 DUF972: Protein of un 34.4 1E+02 0.0022 30.1 6.0 39 835-873 19-57 (107)
348 PRK04406 hypothetical protein; 34.4 1.9E+02 0.0042 26.3 7.4 25 843-867 9-33 (75)
349 PTZ00464 SNF-7-like protein; P 34.3 1.2E+02 0.0026 33.2 7.3 26 880-905 95-123 (211)
350 PRK13940 glutamyl-tRNA reducta 34.3 1.3E+02 0.0028 36.4 8.2 73 828-901 310-394 (414)
351 KOG3723 PH domain protein Melt 34.2 30 0.00065 42.2 2.8 80 37-127 755-840 (851)
352 PF04762 IKI3: IKI3 family; I 34.2 1.3E+03 0.029 31.0 22.1 40 270-309 411-455 (928)
353 PF14257 DUF4349: Domain of un 34.1 1.4E+02 0.0031 33.4 8.2 64 837-905 131-194 (262)
354 cd01249 PH_oligophrenin Oligop 34.1 68 0.0015 31.1 4.7 35 85-119 67-101 (104)
355 PRK05560 DNA gyrase subunit A; 34.1 1.2E+03 0.027 30.7 21.5 214 342-585 546-773 (805)
356 PF05667 DUF812: Protein of un 34.1 1.7E+02 0.0037 37.0 9.5 37 837-873 327-363 (594)
357 PF14182 YgaB: YgaB-like prote 34.0 3.8E+02 0.0083 24.7 9.4 68 821-898 2-69 (79)
358 TIGR01063 gyrA DNA gyrase, A s 34.0 1.2E+03 0.027 30.7 21.7 122 288-423 542-674 (800)
359 PF15030 DUF4527: Protein of u 34.0 1.8E+02 0.004 32.2 8.3 22 826-847 11-32 (277)
360 TIGR02169 SMC_prok_A chromosom 34.0 2E+02 0.0044 39.0 11.1 9 571-579 641-649 (1164)
361 PRK14149 heat shock protein Gr 33.9 1.7E+02 0.0037 31.5 8.2 56 838-894 43-98 (191)
362 PF04420 CHD5: CHD5-like prote 33.9 97 0.0021 32.4 6.3 36 832-867 41-88 (161)
363 KOG0649 WD40 repeat protein [G 33.9 4.6E+02 0.0099 29.5 11.3 48 389-437 62-110 (325)
364 PRK09973 putative outer membra 33.9 1.3E+02 0.0028 28.1 6.3 38 835-872 28-65 (85)
365 COG1382 GimC Prefoldin, chaper 33.8 1.1E+02 0.0023 30.5 6.1 40 824-863 70-109 (119)
366 PF08647 BRE1: BRE1 E3 ubiquit 33.7 2.9E+02 0.0063 26.3 8.9 45 829-873 8-52 (96)
367 KOG0804 Cytoplasmic Zn-finger 33.7 2.7E+02 0.0057 33.7 10.2 25 635-663 228-252 (493)
368 PRK14472 F0F1 ATP synthase sub 33.6 4.6E+02 0.01 27.5 11.5 15 839-853 60-74 (175)
369 COG4942 Membrane-bound metallo 33.6 3E+02 0.0066 33.2 10.9 13 1038-1050 394-406 (420)
370 PF13094 CENP-Q: CENP-Q, a CEN 33.6 2.4E+02 0.0052 29.2 9.2 63 826-902 22-84 (160)
371 KOG0612 Rho-associated, coiled 33.5 1.3E+02 0.0028 40.3 8.4 78 828-905 564-641 (1317)
372 PF07851 TMPIT: TMPIT-like pro 33.5 2.5E+02 0.0054 32.8 10.0 72 835-906 8-87 (330)
373 PF09730 BicD: Microtubule-ass 33.4 2.3E+02 0.0051 36.5 10.5 58 837-901 264-321 (717)
374 PF05911 DUF869: Plant protein 33.3 2.6E+02 0.0056 36.5 11.0 71 832-902 590-660 (769)
375 PF09730 BicD: Microtubule-ass 33.3 2.3E+02 0.005 36.5 10.5 66 840-905 400-465 (717)
376 cd01243 PH_MRCK MRCK (myotonic 33.2 3.2E+02 0.0068 27.4 9.1 25 98-122 94-118 (122)
377 PF00170 bZIP_1: bZIP transcri 33.2 1.7E+02 0.0036 25.5 6.7 28 839-866 27-54 (64)
378 COG1196 Smc Chromosome segrega 33.1 2.1E+02 0.0045 39.4 10.9 62 840-901 399-460 (1163)
379 PRK09174 F0F1 ATP synthase sub 33.0 4.6E+02 0.0099 28.5 11.5 39 838-879 94-132 (204)
380 PRK14159 heat shock protein Gr 33.0 2.1E+02 0.0045 30.5 8.5 57 837-894 29-85 (176)
381 PF06273 eIF-4B: Plant specifi 33.0 1.6E+02 0.0035 35.8 8.5 19 883-901 399-417 (492)
382 PLN02943 aminoacyl-tRNA ligase 32.9 75 0.0016 42.5 6.5 60 843-902 887-953 (958)
383 TIGR03545 conserved hypothetic 32.8 2E+02 0.0043 36.1 9.7 80 823-902 174-262 (555)
384 PF10018 Med4: Vitamin-D-recep 32.8 1.3E+02 0.0029 32.1 7.3 27 844-870 28-54 (188)
385 COG3883 Uncharacterized protei 32.7 2.4E+02 0.0051 32.0 9.3 25 879-903 79-103 (265)
386 TIGR03185 DNA_S_dndD DNA sulfu 32.7 2.9E+02 0.0062 35.4 11.5 38 834-871 212-249 (650)
387 KOG0239 Kinesin (KAR3 subfamil 32.7 2.7E+02 0.0059 35.8 11.0 52 827-878 230-281 (670)
388 TIGR00019 prfA peptide chain r 32.6 2.7E+02 0.0059 33.0 10.2 66 838-911 40-111 (360)
389 CHL00019 atpF ATP synthase CF0 32.4 4.7E+02 0.01 27.7 11.4 41 839-882 66-106 (184)
390 PF06103 DUF948: Bacterial pro 32.4 2.3E+02 0.005 26.2 8.0 31 838-868 40-70 (90)
391 KOG3433 Protein involved in me 32.4 2.1E+02 0.0046 30.4 8.2 60 842-901 85-144 (203)
392 KOG1003 Actin filament-coating 32.3 1.9E+02 0.0041 31.2 7.9 57 839-898 5-71 (205)
393 PF15456 Uds1: Up-regulated Du 32.3 2.5E+02 0.0053 28.2 8.5 42 835-877 18-61 (124)
394 TIGR03548 mutarot_permut cycli 32.2 7.7E+02 0.017 28.1 14.1 15 518-532 166-180 (323)
395 PF08287 DASH_Spc19: Spc19; I 32.1 69 0.0015 33.3 4.8 46 821-866 58-103 (153)
396 TIGR02209 ftsL_broad cell divi 32.1 1.9E+02 0.004 26.4 7.2 30 835-864 28-57 (85)
397 PF09755 DUF2046: Uncharacteri 32.1 2.7E+02 0.0058 32.2 9.7 46 827-872 23-68 (310)
398 PF04977 DivIC: Septum formati 32.1 97 0.0021 27.7 5.3 33 838-870 17-49 (80)
399 PF08614 ATG16: Autophagy prot 32.1 2E+02 0.0042 30.9 8.5 43 827-869 105-147 (194)
400 smart00706 TECPR Beta propelle 31.9 69 0.0015 24.2 3.6 24 391-414 9-33 (35)
401 PRK15365 type III secretion sy 31.9 3.9E+02 0.0084 25.6 9.0 82 827-908 12-101 (107)
402 PRK06568 F0F1 ATP synthase sub 31.8 4.4E+02 0.0096 27.4 10.6 17 866-882 85-101 (154)
403 KOG1900 Nuclear pore complex, 31.8 3.6E+02 0.0077 36.8 11.9 45 546-590 231-278 (1311)
404 PRK06231 F0F1 ATP synthase sub 31.6 4.8E+02 0.01 28.3 11.4 13 841-853 92-104 (205)
405 cd01263 PH_anillin Anillin Ple 31.6 2.3E+02 0.005 28.3 8.1 17 104-120 104-120 (122)
406 KOG4360 Uncharacterized coiled 31.6 3.4E+02 0.0074 33.3 10.7 23 882-904 263-285 (596)
407 PF15290 Syntaphilin: Golgi-lo 31.5 5.1E+02 0.011 29.5 11.4 28 841-868 71-98 (305)
408 PRK00045 hemA glutamyl-tRNA re 31.4 1.6E+02 0.0035 35.5 8.6 73 827-900 316-400 (423)
409 PTZ00419 valyl-tRNA synthetase 31.4 76 0.0016 42.7 6.3 56 846-901 930-992 (995)
410 PF11488 Lge1: Transcriptional 31.4 1.2E+02 0.0026 27.9 5.7 35 838-872 44-78 (80)
411 PRK14160 heat shock protein Gr 31.1 2.3E+02 0.0051 31.0 8.8 64 840-905 56-119 (211)
412 PF01920 Prefoldin_2: Prefoldi 31.1 1.2E+02 0.0026 28.6 6.0 41 830-870 61-101 (106)
413 PF04102 SlyX: SlyX; InterPro 31.0 94 0.002 27.7 4.8 22 832-853 19-40 (69)
414 PF14662 CCDC155: Coiled-coil 31.0 5.6E+02 0.012 27.7 11.2 20 831-850 36-55 (193)
415 cd01221 PH_ephexin Ephexin Ple 30.9 2.5E+02 0.0053 28.3 8.2 34 87-120 82-119 (125)
416 PRK00736 hypothetical protein; 30.9 1.3E+02 0.0028 26.9 5.6 15 889-903 42-56 (68)
417 PRK00295 hypothetical protein; 30.8 1.4E+02 0.0031 26.6 5.9 14 889-902 42-55 (68)
418 KOG4005 Transcription factor X 30.7 1.8E+02 0.0038 32.1 7.6 22 829-850 102-123 (292)
419 PF08614 ATG16: Autophagy prot 30.6 68 0.0015 34.4 4.7 41 826-866 83-123 (194)
420 PRK06746 peptide chain release 30.6 3.2E+02 0.0069 32.0 10.2 66 836-909 16-84 (326)
421 PF01166 TSC22: TSC-22/dip/bun 30.6 61 0.0013 28.0 3.3 30 837-866 13-42 (59)
422 TIGR00634 recN DNA repair prot 30.4 1.7E+02 0.0038 36.6 8.9 20 881-900 373-392 (563)
423 cd07666 BAR_SNX7 The Bin/Amphi 30.4 2.6E+02 0.0056 31.4 9.2 50 835-884 160-209 (243)
424 PF10828 DUF2570: Protein of u 30.4 5.2E+02 0.011 25.1 10.5 41 837-877 24-64 (110)
425 KOG0250 DNA repair protein RAD 30.4 2.8E+02 0.0061 37.0 10.6 74 824-897 734-807 (1074)
426 COG0172 SerS Seryl-tRNA synthe 30.3 2E+02 0.0044 34.7 8.9 60 1033-1092 242-318 (429)
427 COG0711 AtpF F0F1-type ATP syn 30.3 5.8E+02 0.013 26.5 11.4 12 869-880 90-101 (161)
428 TIGR02168 SMC_prok_B chromosom 30.2 2.5E+02 0.0053 38.1 11.0 6 91-96 25-30 (1179)
429 PF01920 Prefoldin_2: Prefoldi 30.1 2.1E+02 0.0044 27.0 7.5 31 838-868 5-35 (106)
430 PF14712 Snapin_Pallidin: Snap 30.0 4.5E+02 0.0098 24.3 9.8 75 827-902 10-86 (92)
431 TIGR02894 DNA_bind_RsfA transc 29.9 2.2E+02 0.0048 29.7 7.8 44 827-870 100-143 (161)
432 TIGR00293 prefoldin, archaeal 29.9 1.7E+02 0.0037 28.8 7.1 31 836-866 4-34 (126)
433 PRK07352 F0F1 ATP synthase sub 29.8 5.7E+02 0.012 26.8 11.4 16 839-854 61-76 (174)
434 KOG2002 TPR-containing nuclear 29.8 3.7E+02 0.008 35.6 11.3 81 824-905 807-889 (1018)
435 KOG0646 WD40 repeat protein [G 29.8 1.1E+03 0.024 28.8 17.0 23 508-530 223-245 (476)
436 PRK10803 tol-pal system protei 29.7 1.2E+02 0.0027 34.2 6.7 29 839-867 62-90 (263)
437 COG1579 Zn-ribbon protein, pos 29.6 2.3E+02 0.005 31.6 8.5 45 836-880 115-159 (239)
438 PF07271 Cytadhesin_P30: Cytad 29.6 64 0.0014 36.2 4.2 47 830-887 96-143 (279)
439 TIGR02977 phageshock_pspA phag 29.5 2.1E+02 0.0046 31.3 8.4 46 835-882 103-148 (219)
440 PF15294 Leu_zip: Leucine zipp 29.5 1.6E+02 0.0034 33.6 7.3 45 834-899 128-172 (278)
441 PF06008 Laminin_I: Laminin Do 29.1 2.9E+02 0.0064 31.0 9.6 35 833-867 54-88 (264)
442 PF07989 Microtub_assoc: Micro 29.1 1.3E+02 0.0028 27.5 5.4 22 850-871 48-69 (75)
443 COG4942 Membrane-bound metallo 29.0 2.2E+02 0.0048 34.3 8.7 51 837-887 205-255 (420)
444 PRK03947 prefoldin subunit alp 29.0 1.3E+02 0.0027 30.5 6.0 40 831-870 94-133 (140)
445 PHA02562 46 endonuclease subun 28.9 3.3E+02 0.0071 33.8 11.0 40 830-869 173-212 (562)
446 PF01093 Clusterin: Clusterin; 28.8 1.4E+02 0.0031 36.1 7.3 52 839-890 24-75 (436)
447 TIGR00293 prefoldin, archaeal 28.8 1.1E+02 0.0024 30.1 5.6 41 841-892 2-42 (126)
448 KOG3229 Vacuolar sorting prote 28.7 7.4E+02 0.016 27.1 11.6 64 825-888 12-77 (227)
449 PRK15396 murein lipoprotein; P 28.7 1.8E+02 0.004 26.8 6.3 34 836-869 30-63 (78)
450 KOG1850 Myosin-like coiled-coi 28.7 3.2E+02 0.0069 31.6 9.3 63 833-902 132-194 (391)
451 PF11839 DUF3359: Protein of u 28.7 5.4E+02 0.012 24.8 10.0 62 841-902 31-92 (96)
452 PF14932 HAUS-augmin3: HAUS au 28.7 5.2E+02 0.011 29.0 11.4 73 829-901 80-153 (256)
453 PLN02372 violaxanthin de-epoxi 28.6 3.3E+02 0.0071 32.6 9.8 19 881-899 426-444 (455)
454 COG4467 Regulator of replicati 28.6 1.3E+02 0.0028 29.2 5.5 42 829-870 13-54 (114)
455 cd00584 Prefoldin_alpha Prefol 28.6 4.8E+02 0.01 25.7 10.1 75 826-903 1-117 (129)
456 PRK05729 valS valyl-tRNA synth 28.5 81 0.0018 41.8 5.7 27 873-899 846-872 (874)
457 PRK13454 F0F1 ATP synthase sub 28.5 6E+02 0.013 27.0 11.3 18 865-882 111-128 (181)
458 PF12128 DUF3584: Protein of u 28.4 2.3E+02 0.0049 39.1 10.1 35 835-869 604-638 (1201)
459 PF04568 IATP: Mitochondrial A 28.4 1.1E+02 0.0023 29.6 4.9 25 845-869 72-100 (100)
460 PF10224 DUF2205: Predicted co 28.2 2.5E+02 0.0053 26.1 7.0 35 828-862 13-47 (80)
461 PF14689 SPOB_a: Sensor_kinase 28.2 3.6E+02 0.0077 23.5 7.9 56 837-901 3-58 (62)
462 PF04012 PspA_IM30: PspA/IM30 28.2 2.4E+02 0.0052 30.6 8.5 61 825-885 17-77 (221)
463 PRK06568 F0F1 ATP synthase sub 28.1 7E+02 0.015 26.0 11.6 38 841-881 48-85 (154)
464 TIGR01843 type_I_hlyD type I s 28.1 3.1E+02 0.0067 32.5 10.2 65 839-903 204-269 (423)
465 KOG0245 Kinesin-like protein [ 27.9 2.2E+02 0.0047 37.8 8.8 60 831-900 361-443 (1221)
466 CHL00118 atpG ATP synthase CF0 27.9 6.6E+02 0.014 25.8 11.3 39 838-879 63-101 (156)
467 PRK00736 hypothetical protein; 27.8 2.4E+02 0.0053 25.1 6.8 47 845-905 5-51 (68)
468 cd07627 BAR_Vps5p The Bin/Amph 27.8 3.6E+02 0.0077 29.4 9.7 35 836-870 120-161 (216)
469 KOG0317 Predicted E3 ubiquitin 27.7 13 0.00028 41.8 -1.4 45 637-695 241-285 (293)
470 PF08657 DASH_Spc34: DASH comp 27.7 1.7E+02 0.0037 33.0 7.3 12 888-899 247-258 (259)
471 PF15136 UPF0449: Uncharacteri 27.7 1.1E+02 0.0025 29.2 4.9 32 836-870 65-96 (97)
472 PF04871 Uso1_p115_C: Uso1 / p 27.6 4.1E+02 0.0088 27.0 9.3 16 837-852 33-48 (136)
473 PRK13455 F0F1 ATP synthase sub 27.6 6.5E+02 0.014 26.6 11.4 37 839-878 69-105 (184)
474 PF02388 FemAB: FemAB family; 27.6 1.7E+02 0.0038 35.1 7.9 30 829-858 240-269 (406)
475 PRK10780 periplasmic chaperone 27.5 6.3E+02 0.014 26.3 11.1 26 829-854 41-66 (165)
476 COG4741 Predicted secreted end 27.5 5.6E+02 0.012 26.6 10.0 31 838-868 15-45 (175)
477 PF12329 TMF_DNA_bd: TATA elem 27.4 4.7E+02 0.01 23.7 8.8 34 838-871 12-45 (74)
478 PRK00846 hypothetical protein; 27.4 5E+02 0.011 24.0 10.3 54 843-903 11-64 (77)
479 PF12072 DUF3552: Domain of un 27.3 3.2E+02 0.0069 29.5 9.1 67 827-898 99-165 (201)
480 KOG2391 Vacuolar sorting prote 27.3 1.1E+03 0.023 27.8 14.1 48 827-874 235-282 (365)
481 KOG0980 Actin-binding protein 27.2 2.9E+02 0.0063 36.0 9.7 72 825-897 495-567 (980)
482 COG3879 Uncharacterized protei 27.2 2E+02 0.0042 32.2 7.4 12 894-905 99-110 (247)
483 PF05911 DUF869: Plant protein 27.2 1.8E+02 0.0038 37.9 8.1 65 835-900 684-760 (769)
484 PF14645 Chibby: Chibby family 27.2 3.1E+02 0.0067 27.2 8.1 30 832-861 72-101 (116)
485 PRK14127 cell division protein 27.2 1.8E+02 0.0038 28.6 6.3 43 828-870 27-69 (109)
486 PF06120 Phage_HK97_TLTM: Tail 27.2 5.8E+02 0.012 29.6 11.4 79 826-904 73-172 (301)
487 PF06810 Phage_GP20: Phage min 27.2 4.1E+02 0.009 27.6 9.5 82 823-904 33-133 (155)
488 KOG1029 Endocytic adaptor prot 27.1 1.5E+02 0.0032 37.9 7.0 15 889-903 488-502 (1118)
489 PRK05759 F0F1 ATP synthase sub 27.1 6.8E+02 0.015 25.5 11.5 15 839-853 46-60 (156)
490 PF11853 DUF3373: Protein of u 27.1 47 0.001 40.6 2.9 30 837-866 30-59 (489)
491 KOG0288 WD40 repeat protein Ti 27.1 2.7E+02 0.0057 33.3 8.7 72 823-894 54-135 (459)
492 PF15408 PH_7: Pleckstrin homo 27.1 66 0.0014 29.9 3.1 78 19-120 16-94 (104)
493 smart00706 TECPR Beta propelle 27.0 1.1E+02 0.0024 23.1 4.0 25 335-359 8-33 (35)
494 KOG2911 Uncharacterized conser 26.9 2.8E+02 0.0061 33.3 9.0 53 822-877 231-283 (439)
495 PF06103 DUF948: Bacterial pro 26.8 5.1E+02 0.011 23.9 9.9 38 840-877 28-65 (90)
496 PRK04406 hypothetical protein; 26.7 1.6E+02 0.0034 26.9 5.5 58 831-902 4-61 (75)
497 KOG0996 Structural maintenance 26.7 2.7E+02 0.0059 37.4 9.5 71 823-898 541-611 (1293)
498 COG3064 TolA Membrane protein 26.7 1.9E+02 0.004 33.3 7.1 23 864-886 145-167 (387)
499 COG1938 Archaeal enzymes of AT 26.7 98 0.0021 34.5 5.0 48 821-873 185-232 (244)
500 TIGR02168 SMC_prok_B chromosom 26.7 3.1E+02 0.0067 37.2 11.0 78 826-903 805-882 (1179)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.9e-45 Score=411.75 Aligned_cols=362 Identities=25% Similarity=0.457 Sum_probs=289.6
Q ss_pred ccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccC--CCCCEEEEEecCceEEEEEcCCcEEEEeCCCC
Q 001236 235 DCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESN--VVLDVHHIACGVRHAALVTRQGEVFTWGEESG 312 (1117)
Q Consensus 235 ~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~--~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~ 312 (1117)
.....++||+||.| ..++||.|.+.. .+..|...... ....|.+++||+.|+++|++||.||+||.|..
T Consensus 63 ~~~~~~~v~~~Gsn-~~~eLGlg~de~--------~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 63 LLVKMASVYSWGSN-GMNELGLGNDET--------KVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred hhhheeeeEEEecC-cceeeccCCchh--------cccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 45667899999998 679999998531 13444443333 45789999999999999999999999999999
Q ss_pred CccCCCCC----------------CceeccEEecc----CCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCC
Q 001236 313 GRLGHGVG----------------KDIVQPHLLES----LTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHG 372 (1117)
Q Consensus 313 GQLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g 372 (1117)
|+||.... .....|..|.. ....+|++++||++++++|+++|+||.||.+ ..+.++.+
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~--r~~e~~~g 211 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTF--RCGELGQG 211 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCc--cccccccc
Confidence 99998761 12457777776 2234799999999999999999999999998 44555555
Q ss_pred C--Ccc----eeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccc-eEE
Q 001236 373 T--DVS----HWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGL-RTI 445 (1117)
Q Consensus 373 ~--~~~----~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~-kI~ 445 (1117)
. ... .++|.+++ ...|+++++|.+|.++|+++|+||+||+|.+||||....+....+..+..+... .|.
T Consensus 212 ~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~ 287 (476)
T COG5184 212 SYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIK 287 (476)
T ss_pred cccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhh
Confidence 2 222 24454443 457999999999999999999999999999999999887777666666544333 368
Q ss_pred EEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCC----CCcccceeecccCCCCEEEEEecCcEEEEEe
Q 001236 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK----EPRLKPTCVPALIDYNFHKVACGHSLTVGLT 521 (1117)
Q Consensus 446 ~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT 521 (1117)
.|+||.+|++|| ..+|++|+||.|.+||||.+.. .....|.....+....|..|++|..|+++|.
T Consensus 288 ~vacG~~h~~al-----------~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~ 356 (476)
T COG5184 288 YVACGKDHSLAL-----------DEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILR 356 (476)
T ss_pred hcccCcceEEEE-----------cCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEe
Confidence 899999999999 5699999999999999999822 1235566666677778999999999999999
Q ss_pred cCCeEEEEeCCCCCCCCCCCCCC---CcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCC-CC
Q 001236 522 TSGHVFTMGSTVYGQLGNPNADG---KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVE-DR 597 (1117)
Q Consensus 522 ~dG~Vy~wGsN~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~-~~ 597 (1117)
.+|.||+||.+..||||.+.... ..|..+. ...++++|+||.+|+++.+.+|+||.||.|++|+||.|+.. +.
T Consensus 357 ~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~ 433 (476)
T COG5184 357 KDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---VAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADV 433 (476)
T ss_pred cCceEEEecCCccccccCcccceeecCCccccc---cccceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhc
Confidence 99999999999999999876321 1222222 13579999999999999999999999999999999999765 55
Q ss_pred cccEEecc--ccCceEEEeecCCCcceeEE
Q 001236 598 KTPALVEA--LKDRHVKYIACGSNYSAAIC 625 (1117)
Q Consensus 598 ~~Pt~V~~--l~~~~V~~VacG~~hT~aL~ 625 (1117)
..|+++.. +....++..-||.++.+...
T Consensus 434 ~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 434 LVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred cccccccccccCCCceEEeccCcceEEEec
Confidence 78888874 66777888888887777664
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=6.7e-40 Score=370.25 Aligned_cols=332 Identities=27% Similarity=0.518 Sum_probs=271.5
Q ss_pred CceEEEEEcCCcEEEEeCCCCCccCCCCCCce-eccEEeccC--CCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCc
Q 001236 292 VRHAALVTRQGEVFTWGEESGGRLGHGVGKDI-VQPHLLESL--TMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGL 368 (1117)
Q Consensus 292 ~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~-~~P~~V~~l--~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~Gq 368 (1117)
..|...++.-+.||+||.|..+|||.|.+... ..|++.... ....|++++||..|+++|++||.||+||.| ..|+
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N--~~G~ 135 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDN--DDGA 135 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccC--cccc
Confidence 45666889999999999999999999987655 889888876 567899999999999999999999999999 7899
Q ss_pred cCCCCC----------------cceeeeeeecC---CCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCC
Q 001236 369 LGHGTD----------------VSHWIPKRISG---PLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKN 429 (1117)
Q Consensus 369 LG~g~~----------------~~~~~P~~V~~---~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~ 429 (1117)
||.... ....+|.+|+. .....+|++++||++++++|+++|.||+||.+..+.++.+....
T Consensus 136 Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 136 LGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccc
Confidence 997661 23567888875 12244899999999999999999999999999999988884432
Q ss_pred ------cccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeeccc-
Q 001236 430 ------VSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL- 502 (1117)
Q Consensus 430 ------~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l- 502 (1117)
..+|..+. ...|+++++|..|.++| +++|+||+||+|.+||||....+....+..+..+
T Consensus 216 s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~l-----------t~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f 281 (476)
T COG5184 216 SQKTSIQFTPLKVP---KKAIVQLAAGADHLIAL-----------TNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF 281 (476)
T ss_pred cccceeeeeeeecC---chheeeeccCCceEEEE-----------ecCCcEEEecCCcccccCCchhhhcccccccCChh
Confidence 23444443 45799999999999999 5699999999999999999887776666655543
Q ss_pred CCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeee-----cccCCCCeEEEEeCCCcceeeecCCe
Q 001236 503 IDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVE-----DKLAGESVEEIACGAYHVAVLTSRNE 577 (1117)
Q Consensus 503 ~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~-----~~l~~~~V~~Is~G~~Ht~aLT~dG~ 577 (1117)
.-..|+.|+||.+|++||+++|+||+||.|.+||||.+ .+...+.... ..+.+..|..|++|..|+++|..+|.
T Consensus 282 ~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~ 360 (476)
T COG5184 282 AIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGT 360 (476)
T ss_pred hhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cccccceeeccccccccCCCceEEEEecCcceEEEEecCce
Confidence 23357899999999999999999999999999999998 4433332222 12445668999999999999999999
Q ss_pred EEEEeCCCCCCCCCCC--CCCCcccEEeccccCceEEEeecCCCcceeEEeeecccchhhcccccccccccccccccccc
Q 001236 578 VYTWGKGANGRLGHGD--VEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCY 655 (1117)
Q Consensus 578 Vy~WG~n~~GQLG~G~--~~~~~~Pt~V~~l~~~~V~~VacG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~ 655 (1117)
||.||++..||||+.. ..+...|+.+.... ++.+|+||..|+++.+ .|+.++.|+...|.
T Consensus 361 l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~--~~~~v~~gt~~~~~~t--------------~~gsvy~wG~ge~g-- 422 (476)
T COG5184 361 LYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI--KLEQVACGTHHNIART--------------DDGSVYSWGWGEHG-- 422 (476)
T ss_pred EEEecCCccccccCcccceeecCCcccccccc--ceEEEEecCccceeec--------------cCCceEEecCchhh--
Confidence 9999999999999998 66667777766443 5999999999999996 44566777777776
Q ss_pred cCc
Q 001236 656 NCG 658 (1117)
Q Consensus 656 ~CG 658 (1117)
+||
T Consensus 423 nlG 425 (476)
T COG5184 423 NLG 425 (476)
T ss_pred hcc
Confidence 454
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.3e-39 Score=343.28 Aligned_cols=336 Identities=26% Similarity=0.471 Sum_probs=288.4
Q ss_pred cccccccccccCCCCCEEEEEec--CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCe
Q 001236 269 ADVLLPRPLESNVVLDVHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFH 346 (1117)
Q Consensus 269 ~~~~~P~~l~s~~~~~I~~Ia~G--~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~h 346 (1117)
..+.-|.++......+|..|+.| .-|+++|+-+|+.|+||.|..||||+++...+..|+.|..|...+|++.+||++|
T Consensus 42 ~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnH 121 (443)
T KOG1427|consen 42 GNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNH 121 (443)
T ss_pred cccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCc
Confidence 36677888888888889999877 5799999999999999999999999999899999999999999999999999999
Q ss_pred EEEEEcCCcEEEEcCCCCCCCccCCCCCcce-eeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCC
Q 001236 347 TCAVTMAGELYTWGDGTHNAGLLGHGTDVSH-WIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHG 425 (1117)
Q Consensus 347 s~aLT~dG~VysWG~n~~~~GqLG~g~~~~~-~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g 425 (1117)
+++||++|.||.||.| .+||||.++.... ..|..+. ..+..|+.|+||..+++.|+..+.|.++|.-.||||||+
T Consensus 122 Tl~ltdtG~v~afGeN--K~GQlGlgn~~~~v~s~~~~~--~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~ 197 (443)
T KOG1427|consen 122 TLVLTDTGQVLAFGEN--KYGQLGLGNAKNEVESTPLPC--VVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHG 197 (443)
T ss_pred EEEEecCCcEEEeccc--ccccccccccccccccCCCcc--ccCccceeeccccceEEEeecccceeecCCccccccccC
Confidence 9999999999999999 7899999986542 2222221 124479999999999999999999999999999999998
Q ss_pred CC--------------CCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCC
Q 001236 426 DR--------------KNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE 491 (1117)
Q Consensus 426 ~~--------------~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~ 491 (1117)
.. +....|..|..+.+..|++++||.+|++|+ ..++.||+||.+.+|+|||....
T Consensus 198 td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvav-----------d~nkrVysWGFGGyGRLGHaEqK 266 (443)
T KOG1427|consen 198 TDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAV-----------DKNKRVYSWGFGGYGRLGHAEQK 266 (443)
T ss_pred cchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeee-----------cCCccEEEeccccccccccccch
Confidence 54 234457778889999999999999999999 56999999999999999999999
Q ss_pred CcccceeecccC--CCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcc
Q 001236 492 PRLKPTCVPALI--DYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHV 569 (1117)
Q Consensus 492 ~~~~P~~V~~l~--~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht 569 (1117)
+...|..+..+. +.--.++.||+..++++.+-|.||.||.+.. ...+..+|.++.+ +.+..+..|.||..|.
T Consensus 267 DEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~-----~ge~~mypkP~~d-lsgwnl~~~~~~~~h~ 340 (443)
T KOG1427|consen 267 DEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN-----NGEDWMYPKPMMD-LSGWNLRWMDSGSMHH 340 (443)
T ss_pred hhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc-----CcccccCCCchhh-cCCccCCCcCccceee
Confidence 999999887653 3345689999999999999999999997642 2345567888775 7788999999999997
Q ss_pred eeeecCCeEEEEeCCCCCCCCCCC--CCCCcccEEeccccCceEEEeecCCCcceeEEe
Q 001236 570 AVLTSRNEVYTWGKGANGRLGHGD--VEDRKTPALVEALKDRHVKYIACGSNYSAAICL 626 (1117)
Q Consensus 570 ~aLT~dG~Vy~WG~n~~GQLG~G~--~~~~~~Pt~V~~l~~~~V~~VacG~~hT~aL~~ 626 (1117)
++ ..+.....||...+|.++-|. ......|..|..+.+.+|..|+||..|+++|..
T Consensus 341 ~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd 398 (443)
T KOG1427|consen 341 FV-GADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVD 398 (443)
T ss_pred ee-cccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEc
Confidence 76 456688999999988776554 345578999999999999999999999999974
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=305.67 Aligned_cols=309 Identities=27% Similarity=0.435 Sum_probs=255.5
Q ss_pred cccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCC
Q 001236 234 DDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGG 313 (1117)
Q Consensus 234 ~~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~G 313 (1117)
..|+-+|+.|.||.| ..||||+|+- .....|+.++.+...+|++.+||++|+++||++|.||+||+|.+|
T Consensus 71 vli~megk~~~wGRN-ekGQLGhgD~---------k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~G 140 (443)
T KOG1427|consen 71 VLIDMEGKCYTWGRN-EKGQLGHGDM---------KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYG 140 (443)
T ss_pred EEEecccceeecccC-ccCccCccch---------hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccc
Confidence 588999999999999 6799999972 233567778888888999999999999999999999999999999
Q ss_pred ccCCCCCCc-eeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcce--------------e
Q 001236 314 RLGHGVGKD-IVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSH--------------W 378 (1117)
Q Consensus 314 QLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~--------------~ 378 (1117)
|||.|.... +..|.++- .-...|..|+||..+++.|+..+.|.++|.. .+||||++++... .
T Consensus 141 QlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~glp--~ygqlgh~td~~~~~~~~~~~~~~e~~p 217 (443)
T KOG1427|consen 141 QLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAGLP--QYGQLGHGTDNEFNMKDSSVRLAYEAQP 217 (443)
T ss_pred cccccccccccccCCCcc-ccCccceeeccccceEEEeecccceeecCCc--cccccccCcchhhccccccceeeeecCC
Confidence 999998653 33443332 3346899999999999999999999999998 8899999987432 2
Q ss_pred eeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccc--cceEEEEeeCCceEEE
Q 001236 379 IPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLS--GLRTIAVACGVWHTAA 456 (1117)
Q Consensus 379 ~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~--~~kI~~VacG~~Ht~a 456 (1117)
.|+.|. ++++++|++++||.+|++++++++.||+||-+-||.|||........|+.++.+. +.--..+.||+..+++
T Consensus 218 r~~~i~-~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~ 296 (443)
T KOG1427|consen 218 RPKAIA-SLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLN 296 (443)
T ss_pred Cccccc-cccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccccee
Confidence 344444 5789999999999999999999999999999999999999999999999887653 3445678999999999
Q ss_pred EEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCC
Q 001236 457 VVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQ 536 (1117)
Q Consensus 457 L~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQ 536 (1117)
+.| -|.||.||.+.. +.+....|..+..+...++..+-||..|.+ +..+-.+..||...+|.
T Consensus 297 v~e-----------~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~ 358 (443)
T KOG1427|consen 297 VAE-----------GGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGE 358 (443)
T ss_pred ecc-----------cceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccc
Confidence 854 899999998764 334566788888889999999999988865 56677899999988877
Q ss_pred CCC-CC--CCCCcceeeecccCCCCeEEEEeCCCcceeeecC
Q 001236 537 LGN-PN--ADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSR 575 (1117)
Q Consensus 537 LG~-~~--~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~d 575 (1117)
++. ++ .....|..+.. +.+.+|.+|+||..|+++|.++
T Consensus 359 ~lggp~~Qkss~~Pk~v~~-l~~i~v~~VamGysHs~vivd~ 399 (443)
T KOG1427|consen 359 LLGGPNGQKSSAAPKKVDM-LEGIHVMGVAMGYSHSMVIVDR 399 (443)
T ss_pred cccCccccccccCccccch-hcceeccceeeccceEEEEEcc
Confidence 553 33 34456766653 7788999999999999999765
No 5
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=99.97 E-value=4.6e-31 Score=218.69 Aligned_cols=59 Identities=73% Similarity=1.262 Sum_probs=57.4
Q ss_pred ccccceEEeecCeeEEEEEEccCCccceeEEEeehhccChhhHHHHHHHhHhHHHhhhc
Q 001236 1032 QVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYN 1090 (1117)
Q Consensus 1032 ~~~~e~~~~~epgv~~t~~~~~~g~~~~~rv~fs~~~f~~~~a~~ww~~n~~~~~~~~~ 1090 (1117)
|+++|||||+||||||||+++|||+++||||||||++|+|+||+.||+||++|||++||
T Consensus 1 q~~~Ewveq~EpGVyiTl~~~p~G~~~LkRVRFSR~~F~e~qA~~WW~eN~~rv~e~Yn 59 (59)
T PF08381_consen 1 QEEKEWVEQDEPGVYITLVSLPDGGNDLKRVRFSRERFSEWQAERWWEENRDRVYEKYN 59 (59)
T ss_pred CCCccEEEeeCCeeEEEEEECCCCCeeEEEEEEhhhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999997
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.93 E-value=1.3e-25 Score=262.48 Aligned_cols=303 Identities=23% Similarity=0.369 Sum_probs=231.1
Q ss_pred EEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCC--CCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCC
Q 001236 297 LVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTM--TSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTD 374 (1117)
Q Consensus 297 ~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~ 374 (1117)
+++...+||+||.|.+.-||+|.......|..|..+.. .-+.+|+.+.+|++++++.|+||++|.+ ..|.||+|..
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG--~GGRlG~gde 214 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHG--AGGRLGFGDE 214 (1267)
T ss_pred ccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccC--CCCccCcCcc
Confidence 56667899999999999999999999999999987753 3478899999999999999999999999 7899999998
Q ss_pred cceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCC-CCcccceeecc--cccc-eEEEEeeC
Q 001236 375 VSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDR-KNVSYPREVES--LSGL-RTIAVACG 450 (1117)
Q Consensus 375 ~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~-~~~~~P~~V~~--l~~~-kI~~VacG 450 (1117)
...+.|++|++ +.+.+|.+|++...|+++||.+|-||+||.|.++|||..+. .....|.+|.. +++. .|+.|++|
T Consensus 215 q~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 215 QYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccc-ccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 88999999997 67889999999999999999999999999999999999765 44556776654 3444 68999999
Q ss_pred CceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCC-cccceeecccCCCCEEEEEecCcEEEEEecCCeEEEE
Q 001236 451 VWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP-RLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTM 529 (1117)
Q Consensus 451 ~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~w 529 (1117)
..|+++.+ +..||+||.|. ||||..+... ...|..+.. ....|..|+|...-|++++.+|.+|++
T Consensus 294 ~~hsVawt------------~~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ 359 (1267)
T KOG0783|consen 294 KSHSVAWT------------DTDVYSWGLNN-GQLGISDNISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAF 359 (1267)
T ss_pred cceeeeee------------cceEEEecccC-ceecCCCCCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEE
Confidence 99999995 68999999974 9999876643 456654432 345799999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCcceeeec-cc--CCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEEeccc
Q 001236 530 GSTVYGQLGNPNADGKLPCLVED-KL--AGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEAL 606 (1117)
Q Consensus 530 GsN~~GQLG~~~~~~~~P~~v~~-~l--~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~V~~l 606 (1117)
-.-..-.+.....+.+ -..|.+ .+ .-..+.+..+...--++||+-|+||.|-.+..- + ..-..+|..+
T Consensus 360 ady~~~k~~~n~~~lk-s~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~----~~c~ftp~r~--- 430 (1267)
T KOG0783|consen 360 ADYNQVKLPFNVDFLK-SLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-R----TSCKFTPLRI--- 430 (1267)
T ss_pred ecccceecCcchhccc-eeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-e----eeeeccccee---
Confidence 8654333332221111 122221 11 123455666667777999999999999865311 0 1111233322
Q ss_pred cCceEEEeecCCCcceeEEee
Q 001236 607 KDRHVKYIACGSNYSAAICLH 627 (1117)
Q Consensus 607 ~~~~V~~VacG~~hT~aL~~~ 627 (1117)
..|.+|+--.|-.++++.+
T Consensus 431 --~~isdIa~~~N~~~~~t~d 449 (1267)
T KOG0783|consen 431 --FEISDIAWTANSLILCTRD 449 (1267)
T ss_pred --eehhhhhhccceEEEEecC
Confidence 2355677666666666654
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.91 E-value=1.5e-24 Score=253.63 Aligned_cols=305 Identities=23% Similarity=0.327 Sum_probs=225.2
Q ss_pred ccCCCCCEEEecCCCCCCcccCCCCCCccccCccccccccccccc--CCCCCEEEEEecCceEEEEEcCCcEEEEeCCCC
Q 001236 235 DCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLES--NVVLDVHHIACGVRHAALVTRQGEVFTWGEESG 312 (1117)
Q Consensus 235 ~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s--~~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~ 312 (1117)
++|.-.|||+||.| .+..||.|+.++. ..|..+.. ..++-+.+|+.+..|++++++.|.||++|.+.+
T Consensus 137 ~~d~pndvy~wG~N-~N~tLGign~~~~---------~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~G 206 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTN-VNNTLGIGNGKEP---------SSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAG 206 (1267)
T ss_pred ccCCccceeEeccc-ccccccccCCCCC---------CChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCC
Confidence 45667899999999 5788999984322 12332222 234446789999999999999999999999999
Q ss_pred CccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcc-eeeeeeecC-CCCCC
Q 001236 313 GRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVS-HWIPKRISG-PLEGL 390 (1117)
Q Consensus 313 GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~-~~~P~~V~~-~l~~~ 390 (1117)
|+||+|+......|++|+.|.+.+|.+|++...|+++||++|-||+||.| ..+|||..+... ...|.+|.. .+.+.
T Consensus 207 GRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN--~~hqLG~~~~~~~~~~p~qI~a~r~kg~ 284 (1267)
T KOG0783|consen 207 GRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLN--GSHQLGLSNDELKKDDPIQITARRIKGF 284 (1267)
T ss_pred CccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEEeecC--cccccCCcCchhhcCchhhhhhHhhcch
Confidence 99999998889999999999999999999999999999999999999999 789999876643 234444431 11222
Q ss_pred -cEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCC-CcccceeecccccceEEEEeeCCceEEEEEEeeecccccc
Q 001236 391 -QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRK-NVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSAS 468 (1117)
Q Consensus 391 -~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~-~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~ 468 (1117)
.|+.|++|..|+++.|.. .||+||.|. ||||..+.. .+..|+.+..+ ...|..|+|....|+++++
T Consensus 285 ~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~--------- 352 (1267)
T KOG0783|consen 285 KQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQ--------- 352 (1267)
T ss_pred hhhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEec---------
Confidence 799999999999999965 699999985 999987663 45678766433 3478999999999999954
Q ss_pred cCCceEEEecCCCCCCCCCCCCCCcccceeeccc----CCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC
Q 001236 469 VSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL----IDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG 544 (1117)
Q Consensus 469 t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l----~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~ 544 (1117)
++.+|++-+-....+ ......+.-..|..- ...++.+..+...-.++||+-|+||.|-+++.-.-- -.
T Consensus 353 --~~~i~~~ady~~~k~--~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~----c~ 424 (1267)
T KOG0783|consen 353 --NNSIIAFADYNQVKL--PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTS----CK 424 (1267)
T ss_pred --CCcEEEEecccceec--CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceee----ee
Confidence 889999876443322 222222233333211 113566677777888999999999999976421100 11
Q ss_pred CcceeeecccCCCCeEEEEeCCCcceeeecCCe
Q 001236 545 KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNE 577 (1117)
Q Consensus 545 ~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~ 577 (1117)
..|..+ ..|.+|+--.+..+++|.||.
T Consensus 425 ftp~r~------~~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 425 FTPLRI------FEISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred ccccee------eehhhhhhccceEEEEecCcc
Confidence 122222 346678877788999999993
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=7.1e-20 Score=219.57 Aligned_cols=328 Identities=22% Similarity=0.328 Sum_probs=210.9
Q ss_pred CCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCceEEEEE--cCCcEEEEeCCCCCc
Q 001236 237 DALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVT--RQGEVFTWGEESGGR 314 (1117)
Q Consensus 237 ~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G~~Hs~~LT--~dG~VyswG~N~~GQ 314 (1117)
...|+||.-|.+...|..-.|+ ..+...+| ..|++|+.|-....++. .+|-++.-|+.. +
T Consensus 495 a~sGKvYYaGn~t~~Gl~e~G~--------nWmEL~l~--------~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k--~ 556 (3738)
T KOG1428|consen 495 ARSGKVYYAGNGTRFGLFETGN--------NWMELCLP--------EPIVQISVGIDTIMFRSGAGHGWIASVDDKK--R 556 (3738)
T ss_pred hcCccEEEecCccEEeEEccCC--------ceEEecCC--------CceEEEEeccchhheeeccCcceEEeccCcc--c
Confidence 5679999999986666554443 22333333 46889999977666654 455566555322 1
Q ss_pred cCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEE
Q 001236 315 LGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVAS 394 (1117)
Q Consensus 315 LG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~ 394 (1117)
.| ....+......+|+.|.+...---+++++|++|+.|...- .......+...+++.-|.+
T Consensus 557 ~~--------~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm-----------~~n~SSqmln~L~~~~iss 617 (3738)
T KOG1428|consen 557 NG--------RLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM-----------RVNVSSQMLNGLDNVMISS 617 (3738)
T ss_pred cc--------chhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE-----------EecchHHHhhccccceeeh
Confidence 11 1111111223567777544333457899999999987521 1111111222467788999
Q ss_pred EEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCC-cccceeec-------------ccccceEEEEeeCCceEEEEEEe
Q 001236 395 VTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKN-VSYPREVE-------------SLSGLRTIAVACGVWHTAAVVEV 460 (1117)
Q Consensus 395 Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~-~~~P~~V~-------------~l~~~kI~~VacG~~Ht~aL~e~ 460 (1117)
++.|..|+++++.+|.||+||.|+.||+|.-.... ...|..-. .+.+...+...||.-....+.-
T Consensus 618 lAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC- 696 (3738)
T KOG1428|consen 618 LALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVAC- 696 (3738)
T ss_pred hhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccccccc-
Confidence 99999999999999999999999999999854321 12222111 1112222233343322221100
Q ss_pred eecccccccCCceEEEecCCCCCCCCCC--------CCC-------------------Ccccceeec---ccCCCCEEEE
Q 001236 461 IVTQSSASVSSGKLFTWGDGDKNRLGHG--------DKE-------------------PRLKPTCVP---ALIDYNFHKV 510 (1117)
Q Consensus 461 ~~~~~~~~t~~G~Ly~WG~n~~GQLG~g--------~~~-------------------~~~~P~~V~---~l~~~~I~~I 510 (1117)
+..-...|.+..+|.+..+.|-.| ... ..+.|..|. ..-+.++.+|
T Consensus 697 ----~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sV 772 (3738)
T KOG1428|consen 697 ----GRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSV 772 (3738)
T ss_pred ----ccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEE
Confidence 012234677888887776544222 100 012233332 2234579999
Q ss_pred EecCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-CCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCC
Q 001236 511 ACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNAD-GKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRL 589 (1117)
Q Consensus 511 a~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQL 589 (1117)
+||..|+++|.+|++||+||+|.+||||.++.. ...|+.|.. +.+..|++|++|.+|++++..||.||+||.-..|||
T Consensus 773 SCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL 851 (3738)
T KOG1428|consen 773 SCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQL 851 (3738)
T ss_pred eccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEEEeccccCccc
Confidence 999999999999999999999999999999764 447888874 567789999999999999999999999999999999
Q ss_pred CCCCCCC--C-cccEEecccc
Q 001236 590 GHGDVED--R-KTPALVEALK 607 (1117)
Q Consensus 590 G~G~~~~--~-~~Pt~V~~l~ 607 (1117)
|..--+. . ..|.+|..+.
T Consensus 852 ~RP~~e~~~WNA~Pe~v~~~G 872 (3738)
T KOG1428|consen 852 ARPAGEKAGWNAIPEKVSGFG 872 (3738)
T ss_pred cCccccccccccCCCcCCCCC
Confidence 9753332 2 4677776553
No 9
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.8e-19 Score=216.24 Aligned_cols=310 Identities=22% Similarity=0.277 Sum_probs=203.5
Q ss_pred CEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEE--cCCcEEEEcC
Q 001236 284 DVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVT--MAGELYTWGD 361 (1117)
Q Consensus 284 ~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT--~dG~VysWG~ 361 (1117)
.-+.+-.|...+++-+.+|+||.-|... ++|+-..-.... .+ .-..+|++|+.|-....++. .+|-++.-|+
T Consensus 480 qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWm--EL--~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D 553 (3738)
T KOG1428|consen 480 QTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWM--EL--CLPEPIVQISVGIDTIMFRSGAGHGWIASVDD 553 (3738)
T ss_pred hheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceE--Ee--cCCCceEEEEeccchhheeeccCcceEEeccC
Confidence 3456778888899999999999998654 455433222211 11 11268999999987777765 4555666555
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeeccccc
Q 001236 362 GTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSG 441 (1117)
Q Consensus 362 n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~ 441 (1117)
... .|.+ .++ .|....+|+.|.+...---.+.++|+||.+|....- .-..-..+..+.+
T Consensus 554 ~k~-~~~~-----------Rr~-~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~ 612 (3738)
T KOG1428|consen 554 KKR-NGRL-----------RRL-VPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDN 612 (3738)
T ss_pred ccc-ccch-----------hhc-CCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhcccc
Confidence 421 1111 111 133455788887665445677999999999854321 1112334667888
Q ss_pred ceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCc-ccceee--------c-----ccCCCCE
Q 001236 442 LRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPR-LKPTCV--------P-----ALIDYNF 507 (1117)
Q Consensus 442 ~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~-~~P~~V--------~-----~l~~~~I 507 (1117)
.-|.+++.|..|++++ +.+|.||+||-|+.+|.|.-..... ..|..- + -+.+..-
T Consensus 613 ~~isslAlGKsH~~av-----------~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~ 681 (3738)
T KOG1428|consen 613 VMISSLALGKSHGVAV-----------TRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPS 681 (3738)
T ss_pred ceeehhhccccceeEE-----------EeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcc
Confidence 8899999999999999 4599999999999999997533211 111110 0 0111122
Q ss_pred EEEEecCcEEEEE------ecCCeEEEEeCCCCCCCCCC--------CCC-------------C-------Ccceeeec-
Q 001236 508 HKVACGHSLTVGL------TTSGHVFTMGSTVYGQLGNP--------NAD-------------G-------KLPCLVED- 552 (1117)
Q Consensus 508 ~~Ia~G~~htlaL------T~dG~Vy~wGsN~~GQLG~~--------~~~-------------~-------~~P~~v~~- 552 (1117)
+-..||......+ .-.|.+-.+|.++.+.|-.+ +.. . .-|..|..
T Consensus 682 VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~s 761 (3738)
T KOG1428|consen 682 VCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILS 761 (3738)
T ss_pred hhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeec
Confidence 2223333221111 12466777777665543211 100 0 11222221
Q ss_pred -ccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEEeccccCceEEEeecCCCcceeEEeeeccc
Q 001236 553 -KLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVS 631 (1117)
Q Consensus 553 -~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~VacG~~hT~aL~~~kwvs 631 (1117)
...+.++.+|+||.+|+++|.++++||+||.|.+||||+||+.....|++|..+.+..+++|++|++||++...++-|-
T Consensus 762 q~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVF 841 (3738)
T KOG1428|consen 762 QGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVF 841 (3738)
T ss_pred cCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEE
Confidence 1234579999999999999999999999999999999999999999999999999999999999999999998764433
No 10
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.82 E-value=2.6e-20 Score=181.52 Aligned_cols=106 Identities=24% Similarity=0.478 Sum_probs=97.3
Q ss_pred HHHHHhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCC--CCcccccceeeecccccCChhHhhhcCC----CCCCce
Q 001236 17 ALIALKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSS--GERSLKLASVSKIIPGQRTAVFQRYLRP----EKDYLS 90 (1117)
Q Consensus 17 ~l~~L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~--~~~~l~l~~I~eI~~G~~t~~f~r~~~~----~~~~~~ 90 (1117)
++.+|++|+.|+|+.++++++.|+|+|++++..|.|.+.+ ..+.|+|++|+|||.|+.++.|+++... ..+++|
T Consensus 2 v~~~L~~G~~~~K~~~~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~ 81 (115)
T cd01248 2 VPEALQRGSVFIKWDDTSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERC 81 (115)
T ss_pred chHHHhCCCEEEEEcCCCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccE
Confidence 5789999999999988889999999999999999997765 4678999999999999999999987654 488999
Q ss_pred EEEEEcCC--cceEEEEeCCHHHHHHHHHHHHHH
Q 001236 91 FSLIYNNG--KRSLDLICKDKVEAEVWIAGLKAL 122 (1117)
Q Consensus 91 FSIiy~~~--~rtLDLva~~~~ea~~Wv~GL~~L 122 (1117)
|||||+.+ .++|||||+++++|+.|++||++|
T Consensus 82 fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 82 FTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred EEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 99999988 899999999999999999999986
No 11
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=99.70 E-value=8.1e-17 Score=158.68 Aligned_cols=106 Identities=31% Similarity=0.459 Sum_probs=93.4
Q ss_pred HHHHHHHHhcCCeEEEEecCC------cCeeEeEEEeCCCCEEEEecCC---------CCcccccceeeecccccCChhH
Q 001236 14 IEQALIALKKGAQLLKYGRKG------KPKFYPFRLSNDETSLIWISSS---------GERSLKLASVSKIIPGQRTAVF 78 (1117)
Q Consensus 14 ~~~~l~~L~~Gt~llK~~r~~------kpk~r~f~Ls~d~~~l~W~s~~---------~~~~l~l~~I~eI~~G~~t~~f 78 (1117)
|.+||..|+.|+.|+||.|++ +||+|||+|+++..+|.|.+.. +.+.+.|.+|.+|..|..++.|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~ 81 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPG 81 (123)
T ss_pred HHHHHHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcc
Confidence 678999999999999999988 9999999999999999996643 2356999999999999999988
Q ss_pred hhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 79 QRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 79 ~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
. .+++.+|||++..+.|+|||+|++.+++++|+.||++|+.
T Consensus 82 ~-----~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 82 L-----KKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred c-----cccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 7 2223677888877889999999999999999999999984
No 12
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.37 E-value=1.7e-13 Score=163.91 Aligned_cols=125 Identities=25% Similarity=0.517 Sum_probs=111.1
Q ss_pred cHHHHHHHHhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCC---CcccccceeeecccccCChhHhhhcCCCCCCc
Q 001236 13 DIEQALIALKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSG---ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYL 89 (1117)
Q Consensus 13 ~~~~~l~~L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~---~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~ 89 (1117)
..+++|..|++|+.|.|++..+|.+.|+|.|+.|+.+++|....+ +..+.+.+|.+||.|++|+.+|+......+++
T Consensus 9 ~~~~~~~~~~~gs~~~k~r~~~~~~~r~~~l~~d~~~~r~~~~~~~~~~~~~~i~~i~~vr~g~~t~~lr~~~~~~~~~~ 88 (746)
T KOG0169|consen 9 NDDECILSMQKGSDLRKVRSNSRKFNRLFKLDNDGSTVRWSRTNRDPNKAKVSISEIEEVRSGKQTENLRSLARDLPEDR 88 (746)
T ss_pred ccHHHHHHHHhcchhhhhcccchhHHhhhhhhhccceEEeccccCCchhcccchhhhHHHhccccchhhHHHHHhcCcce
Confidence 457899999999999999999999999999999999999953322 33489999999999999999999988999999
Q ss_pred eEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH--HccCCCCccccccC
Q 001236 90 SFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI--SSGQGGRSKIDGWN 137 (1117)
Q Consensus 90 ~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li--~~~~~~~~~~~~w~ 137 (1117)
||+|+|+.+..+|||+|.++++++.||+||+.|+ ...+.+++..++|-
T Consensus 89 ~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~~~~~~~~~~~wi 138 (746)
T KOG0169|consen 89 CFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSKSMRQRSRREHWI 138 (746)
T ss_pred eEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccchhhhcchHHHHH
Confidence 9999999999999999999999999999999999 44555666666665
No 13
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=99.29 E-value=1.5e-12 Score=100.09 Aligned_cols=32 Identities=75% Similarity=0.917 Sum_probs=29.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 001236 876 AEESSKAKAAKDVIKSLTAQLKDMAERLPPGV 907 (1117)
Q Consensus 876 ~~e~~~~kaake~ik~lt~qlk~~~~~~~~~~ 907 (1117)
+|||+|||||||||||||+|||+|+||||++.
T Consensus 1 ~eEaak~kaaKe~IKsLt~QlK~maekl~~~~ 32 (39)
T PF13713_consen 1 AEEAAKCKAAKEVIKSLTAQLKDMAEKLPGAY 32 (39)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 48999999999999999999999999998653
No 14
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.22 E-value=1.5e-12 Score=153.53 Aligned_cols=138 Identities=20% Similarity=0.420 Sum_probs=123.6
Q ss_pred CccccccCCCcccHHHHHHHHhcCCeEEEE-ecCCcCeeEeEEEeCCCCEEEEecCC--CCcccccceeeecccccCChh
Q 001236 1 MADLVSYGNADRDIEQALIALKKGAQLLKY-GRKGKPKFYPFRLSNDETSLIWISSS--GERSLKLASVSKIIPGQRTAV 77 (1117)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~L~~Gt~llK~-~r~~kpk~r~f~Ls~d~~~l~W~s~~--~~~~l~l~~I~eI~~G~~t~~ 77 (1117)
|.+.+..+|.+.+..|.+..|..|+.|+++ +++.+|.+|.+.+-.+.+++.|.... -++.++|.+|+|||+|+++..
T Consensus 1 ~~~~n~~aps~~e~~~t~~sle~gtvmt~~~sk~~~peRr~l~~~~Etrq~~ws~~adk~egai~i~eikeirpgk~skd 80 (1267)
T KOG1264|consen 1 STCVNVDAPSEYEKSQTKRSLELGTVMTVFSSKKSTPERRTLQVIMETRQVAWSKTADKIEGAIDIREIKEIRPGKNSKD 80 (1267)
T ss_pred CCcccCCCcchhhHHHHHhhhccceEEEEEecCCCChhhHHHHHHHHHHHHHHHHHHHhhcceeeeeeeeeccCCccchh
Confidence 667777889999999999999999999999 44568999999999999999996653 478999999999999999999
Q ss_pred HhhhcCC--CCCCceEEEEEcCC--cceEEEEeCCHHHHHHHHHHHHHHHHccCCC--CccccccCC
Q 001236 78 FQRYLRP--EKDYLSFSLIYNNG--KRSLDLICKDKVEAEVWIAGLKALISSGQGG--RSKIDGWND 138 (1117)
Q Consensus 78 f~r~~~~--~~~~~~FSIiy~~~--~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~~--~~~~~~w~~ 138 (1117)
|+||++. .++++||.|.|+.. .|+|.|+|.+++|++.|+.||++|+.+.+.. +..+++|..
T Consensus 81 fdry~~~fr~k~s~cfvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl~a~~p~qI~~wlr 147 (1267)
T KOG1264|consen 81 FDRYKRAFRQKESCCFVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTLNAPTPLQIERWLR 147 (1267)
T ss_pred HHHHHHHhccccceeEEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhccCCChHHHHHHHH
Confidence 9999864 67899999999985 6899999999999999999999999888766 677899985
No 15
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.07 E-value=1.2e-10 Score=96.69 Aligned_cols=50 Identities=34% Similarity=0.675 Sum_probs=47.9
Q ss_pred CCeEEEEeCCCCCCCC-CCCCCCCcccEEeccccCceEEEeecCCCcceeE
Q 001236 575 RNEVYTWGKGANGRLG-HGDVEDRKTPALVEALKDRHVKYIACGSNYSAAI 624 (1117)
Q Consensus 575 dG~Vy~WG~n~~GQLG-~G~~~~~~~Pt~V~~l~~~~V~~VacG~~hT~aL 624 (1117)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999987
No 16
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.06 E-value=5.5e-11 Score=105.34 Aligned_cols=68 Identities=41% Similarity=0.944 Sum_probs=47.6
Q ss_pred eecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhh
Q 001236 627 HKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1117)
Q Consensus 627 ~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~ 694 (1117)
+.|+++.+...|..|+..|++.+++|||+.||.+||..|+..+...+.......+++|||+.||..|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 36999999999999999999999999999999999999999888665334455689999999999886
No 17
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.7e-12 Score=152.38 Aligned_cols=187 Identities=31% Similarity=0.486 Sum_probs=147.9
Q ss_pred ccccccCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcC
Q 001236 274 PRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMA 353 (1117)
Q Consensus 274 P~~l~s~~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~d 353 (1117)
|+.+.......|.+|+||.+|+++++..|++|+||.|.+||+|++....-..|..++.+.+....+|++|..|+++++.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~- 83 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS- 83 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh-
Confidence 4444444556789999999999999999999999999999999995443334999999999999999999999999874
Q ss_pred CcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccc
Q 001236 354 GELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYP 433 (1117)
Q Consensus 354 G~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P 433 (1117)
|+++++.+|.+|++|....||+|+.-......|
T Consensus 84 -----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~ 116 (850)
T KOG0941|consen 84 -----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLP 116 (850)
T ss_pred -----------------------------------------------chhhcchhccccccCCccccccccccccccccc
Confidence 999999999999999999999999777777888
Q ss_pred eeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeeccc------CCCCE
Q 001236 434 REVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL------IDYNF 507 (1117)
Q Consensus 434 ~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l------~~~~I 507 (1117)
..+..+.+..+..|+||..|+.+++. .-|++|..|.+..| +.....+..-..+ ....+
T Consensus 117 ~~v~e~i~~~~t~ia~~~~ht~a~v~----------~l~qsf~~~~~~sG------k~~i~s~s~~~~l~~~d~~~~~~~ 180 (850)
T KOG0941|consen 117 LLVLELIGSRVTRIACVRGHTLAIVP----------RLGQSFSFGKGASG------KGVIVSLSGEDLLRDHDSEKDHRC 180 (850)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhh----------hhcceeecccCCCC------CceeeccchhhhcccccHHHHHHH
Confidence 88888888899999999999999864 57899999988876 1011111110000 11234
Q ss_pred EEEEecCcEEEEEecCC
Q 001236 508 HKVACGHSLTVGLTTSG 524 (1117)
Q Consensus 508 ~~Ia~G~~htlaLT~dG 524 (1117)
..+.+|.+.+..|...+
T Consensus 181 ~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 181 SLAFAGGDQTFSLSSKG 197 (850)
T ss_pred HHHhcCCCceEEEEeec
Confidence 45778888888766554
No 18
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2e-09 Score=128.65 Aligned_cols=70 Identities=39% Similarity=0.884 Sum_probs=60.8
Q ss_pred EeeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhhccc
Q 001236 625 CLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSEA 699 (1117)
Q Consensus 625 ~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~~~~ 699 (1117)
+...|+. ...|..|...|+++.++|||++||.+||..|+++-..++.++.. +|+|||+.||..|.+....
T Consensus 158 ~~pdW~D---~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~--~~VRVCd~C~E~l~~~s~~ 227 (634)
T KOG1818|consen 158 TAPDWID---SEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIE--KPVRVCDSCYELLTRASVG 227 (634)
T ss_pred CCccccc---ccccceeeeeeeeccccccccccchhhccCccccccCccccccc--ccceehhhhHHHhhhcccc
Confidence 3455654 45699999999999999999999999999999999999999888 9999999999999875443
No 19
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.93 E-value=1.3e-09 Score=90.37 Aligned_cols=50 Identities=34% Similarity=0.639 Sum_probs=47.5
Q ss_pred CCcEEEEeCCCCCccC-CCCCCceeccEEeccCCCCCeEEEEecCCeEEEE
Q 001236 301 QGEVFTWGEESGGRLG-HGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAV 350 (1117)
Q Consensus 301 dG~VyswG~N~~GQLG-~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aL 350 (1117)
||+||+||.|.+|||| .+.......|++|+.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 8888899999999999999999999999999987
No 20
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=98.84 E-value=3.6e-10 Score=130.39 Aligned_cols=115 Identities=28% Similarity=0.422 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCeEEEE-ecCCcCeeEeEEEeCCCCEEEEecCCCC-----------cccccceeeecccccCChhHhhhc
Q 001236 15 EQALIALKKGAQLLKY-GRKGKPKFYPFRLSNDETSLIWISSSGE-----------RSLKLASVSKIIPGQRTAVFQRYL 82 (1117)
Q Consensus 15 ~~~l~~L~~Gt~llK~-~r~~kpk~r~f~Ls~d~~~l~W~s~~~~-----------~~l~l~~I~eI~~G~~t~~f~r~~ 82 (1117)
.|.|.+|+.||.|.|. +|+.+.||+|++|+++++.|++.+...+ +.++++||+.|..|+++++.+...
T Consensus 534 qqrLnrL~eGt~FRKl~~rrrqdkFWycrLspnhKvLhygd~de~p~~e~~~esl~~klpvaDIkav~tgkdcphmkek~ 613 (713)
T KOG2999|consen 534 QQRLNRLVEGTVFRKLSKRRRQDKFWYCRLSPNHKVLHYGDCDEEPQGEVTQESLQEKLPVADIKAVVTGKDCPHMKEKS 613 (713)
T ss_pred HHHHHHHHhhhHHHHhhhhhhhhhheeeeecCCcceeeecCccCCCCCCCchhhhhhhcCHHHHHHHhcCCCCcchhhcc
Confidence 4799999999999999 5567889999999999999999665432 359999999999999999998752
Q ss_pred C----CCCCCceEEEEEcC-CcceEEEEeCCHHHHHHHHHHHHHHHHccCCC
Q 001236 83 R----PEKDYLSFSLIYNN-GKRSLDLICKDKVEAEVWIAGLKALISSGQGG 129 (1117)
Q Consensus 83 ~----~~~~~~~FSIiy~~-~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~~ 129 (1117)
. .+.-.+.|||.|.. ...+|++||+|+.|+.+|+.||.+|+...|-+
T Consensus 614 a~kQnk~~lelafsityD~~e~~~Lnfiapdk~e~~iWtdGL~aLLG~~m~s 665 (713)
T KOG2999|consen 614 ALKQNKEVLELAFSITYDMKEGETLNFIAPDKTEYCIWTDGLNALLGSDMVS 665 (713)
T ss_pred hhhhhHHHHhhhhhhhccCCCCceEeeecCCcceEEeehhhHHHHhCChhhh
Confidence 2 24567999999974 36789999999999999999999999777755
No 22
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.3e-10 Score=140.05 Aligned_cols=180 Identities=26% Similarity=0.388 Sum_probs=140.7
Q ss_pred CCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccc
Q 001236 389 GLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSAS 468 (1117)
Q Consensus 389 ~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~ 468 (1117)
-.+|.+|+||.+|+++++..|.+|+||.|.+||+|++.......|..++.+.+.+..+|+||..|++++.- .+...
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~----~~~~l 88 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS----HTVLL 88 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh----chhhc
Confidence 34789999999999999999999999999999999995544445999999999999999999999999842 33456
Q ss_pred cCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEec-CCeEEEEeCCCCC--CCCCCCCCCC
Q 001236 469 VSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTT-SGHVFTMGSTVYG--QLGNPNADGK 545 (1117)
Q Consensus 469 t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~-dG~Vy~wGsN~~G--QLG~~~~~~~ 545 (1117)
+..|.+|++|.+..||+|+.-......|..+..+....+.+|+||..|+++.-. -|++|.+|.+..| ++-...
T Consensus 89 t~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk~~i~s~s---- 164 (850)
T KOG0941|consen 89 TDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGKGVIVSLS---- 164 (850)
T ss_pred chhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCCceeeccc----
Confidence 779999999999999999987788888988888888899999999999987655 4999999998877 111000
Q ss_pred cceeee--cccCCCCeEEEEeCCCcceeeecCC
Q 001236 546 LPCLVE--DKLAGESVEEIACGAYHVAVLTSRN 576 (1117)
Q Consensus 546 ~P~~v~--~~l~~~~V~~Is~G~~Ht~aLT~dG 576 (1117)
.+.... +.-....+..+..|.+.+..+...+
T Consensus 165 ~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~ 197 (850)
T KOG0941|consen 165 GEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKG 197 (850)
T ss_pred hhhhcccccHHHHHHHHHHhcCCCceEEEEeec
Confidence 000000 0011223556778888888776554
No 23
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=98.77 E-value=1.6e-09 Score=120.33 Aligned_cols=67 Identities=37% Similarity=0.867 Sum_probs=60.6
Q ss_pred eeecccchhhcccccccc-cccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhh
Q 001236 626 LHKWVSSAEQLQCSACRQ-AFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~-~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~ 695 (1117)
.+.|+++.+...|+.|+. .|++..+||||++||.+||..|+.++. .+.....+|.|||+.||..|.+
T Consensus 159 ~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~---~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 159 AAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRF---LLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred CCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcc---cccccCCCCceecHHHHHHHhc
Confidence 468999999999999999 999999999999999999999998764 4455667999999999999987
No 24
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=98.71 E-value=6e-09 Score=122.99 Aligned_cols=75 Identities=29% Similarity=0.656 Sum_probs=55.5
Q ss_pred EEeeecccchh-hccccccccccccc-----ccccccccCcceeccCCCCccccc--cccC----CCCCCCeecChhhHh
Q 001236 624 ICLHKWVSSAE-QLQCSACRQAFGFT-----RKRHNCYNCGLVHCHSCSSRKALR--AALA----PNPGKPYRVCDCCFA 691 (1117)
Q Consensus 624 L~~~kwvs~~d-~s~Cs~C~~~F~f~-----rkrh~C~~CG~v~C~~CSs~k~l~--~~l~----~~~~kp~RVC~~C~~ 691 (1117)
+..+.|+++.+ ...|+.|+..|.+. .++|||++||.+||..||+++... ..+. ++...|+|||+.||.
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 34578999887 47899999999753 489999999999999999987632 1121 111235689999998
Q ss_pred hhhhhcc
Q 001236 692 KLNKVSE 698 (1117)
Q Consensus 692 ~l~~~~~ 698 (1117)
++....+
T Consensus 528 q~EnLlQ 534 (1374)
T PTZ00303 528 EYETVSQ 534 (1374)
T ss_pred HHHhHHh
Confidence 7765444
No 25
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.63 E-value=3.8e-08 Score=72.76 Aligned_cols=30 Identities=37% Similarity=0.933 Sum_probs=26.1
Q ss_pred EEEEEecCCeeEEEccCCcEEEEeCCCCCC
Q 001236 392 VASVTCGPWHTALITSTGQLFTFGDGTFGV 421 (1117)
Q Consensus 392 Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQ 421 (1117)
|++|+||.+|+++|+++|+||+||+|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 26
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.62 E-value=5.2e-08 Score=72.02 Aligned_cols=30 Identities=43% Similarity=0.894 Sum_probs=26.0
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCc
Q 001236 285 VHHIACGVRHAALVTRQGEVFTWGEESGGR 314 (1117)
Q Consensus 285 I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQ 314 (1117)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 27
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=98.59 E-value=1.1e-08 Score=115.90 Aligned_cols=71 Identities=34% Similarity=0.721 Sum_probs=61.7
Q ss_pred cceeEEeeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecCh-----hhHhh
Q 001236 620 YSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCD-----CCFAK 692 (1117)
Q Consensus 620 hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~-----~C~~~ 692 (1117)
.++.|.-+.|+++.+...|+.|..+|.+.|+||||++||.+||+.||...+.++..+.+ |..|||. .||..
T Consensus 886 tsatlsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~--ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 886 TSATLSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLD--KAPRVCRPQSNLDCLTR 961 (990)
T ss_pred cccccCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccc--cCceecCCcccccceee
Confidence 34455667999999999999999999999999999999999999999877777766666 8899999 78764
No 28
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=98.36 E-value=1.8e-07 Score=79.58 Aligned_cols=55 Identities=42% Similarity=1.018 Sum_probs=47.4
Q ss_pred hcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHh
Q 001236 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFA 691 (1117)
Q Consensus 635 ~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~ 691 (1117)
...|..|+..|++..++|||+.||.++|..|+..+...+.+ ...+|.|||..||.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~--~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSM--GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcc--cCCCccEeChHHhC
Confidence 35689999999999999999999999999999987755443 45689999999996
No 29
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.59 E-value=9.8e-06 Score=92.44 Aligned_cols=68 Identities=34% Similarity=0.805 Sum_probs=53.4
Q ss_pred ecccchhhcccccccccccccccccccccCcceeccCCCCccccccc------------c--------CCCCCCCeecCh
Q 001236 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAA------------L--------APNPGKPYRVCD 687 (1117)
Q Consensus 628 kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~------------l--------~~~~~kp~RVC~ 687 (1117)
-|+.+.....|..|.+.|+.+++||||+-||.|+|+.|+-.-.+..+ . ....+.+.|+|.
T Consensus 173 pW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRlC~ 252 (505)
T KOG1842|consen 173 PWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRLCM 252 (505)
T ss_pred cccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHHHH
Confidence 59999999999999999999999999999999999999632210000 0 123456789999
Q ss_pred hhHhhhhh
Q 001236 688 CCFAKLNK 695 (1117)
Q Consensus 688 ~C~~~l~~ 695 (1117)
.|..-|-.
T Consensus 253 hCl~~L~~ 260 (505)
T KOG1842|consen 253 HCLDNLFR 260 (505)
T ss_pred HHHHHHHH
Confidence 99998866
No 30
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=97.55 E-value=2e-05 Score=98.11 Aligned_cols=62 Identities=29% Similarity=0.551 Sum_probs=52.4
Q ss_pred EeeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhh
Q 001236 625 CLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCC 689 (1117)
Q Consensus 625 ~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C 689 (1117)
..+.||++...--|+.|.+.|.+..+||||++||.++|..|++.+.... +..++..|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~le---yl~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALE---YLSESEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhh---hcCcccccccccc
Confidence 3578999999999999999999999999999999999999999877443 3334567777776
No 31
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.53 E-value=0.00062 Score=64.76 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=54.8
Q ss_pred eeEeEEEeCCCCEEEEecCC---CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSS---GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAE 113 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~---~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~ 113 (1117)
|.|+|.|+ ...|.|++.. +...|+|..|+.|..-.+. ......+|.|++.+ |+|-|.|++++|++
T Consensus 22 KkRwF~Lt--~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~--------~~~~~~~fqivt~~--r~~yi~a~s~~E~~ 89 (98)
T cd01244 22 KKRYFQLT--TTHLSWAKDVQCKKSALIKLAAIKGTEPLSDK--------SFVNVDIITIVCED--DTMQLQFEAPVEAT 89 (98)
T ss_pred ceeEEEEC--CCEEEEECCCCCceeeeEEccceEEEEEcCCc--------ccCCCceEEEEeCC--CeEEEECCCHHHHH
Confidence 67899998 4567775433 3567999999888653221 12224699999965 89999999999999
Q ss_pred HHHHHHHH
Q 001236 114 VWIAGLKA 121 (1117)
Q Consensus 114 ~Wv~GL~~ 121 (1117)
.|+..|+.
T Consensus 90 ~Wi~al~k 97 (98)
T cd01244 90 DWLNALEK 97 (98)
T ss_pred HHHHHHhc
Confidence 99999874
No 32
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.38 E-value=6.9e-05 Score=83.53 Aligned_cols=80 Identities=28% Similarity=0.717 Sum_probs=62.4
Q ss_pred EEeecCCCcceeEE--------eeecccchhhccccccccccc-----------ccccccccccCcceeccCCCCccccc
Q 001236 612 KYIACGSNYSAAIC--------LHKWVSSAEQLQCSACRQAFG-----------FTRKRHNCYNCGLVHCHSCSSRKALR 672 (1117)
Q Consensus 612 ~~VacG~~hT~aL~--------~~kwvs~~d~s~Cs~C~~~F~-----------f~rkrh~C~~CG~v~C~~CSs~k~l~ 672 (1117)
.-++||.+--+++- .+.|+..+ .|..|.++|- ++-+.|||+.||..+|..|++++...
T Consensus 254 ~l~S~~edg~i~~w~mn~~r~etpewl~s~---~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~ 330 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNVKRVETPEWLDSD---SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSY 330 (404)
T ss_pred eeeeccCCCeEEEEeccceeecCccccccc---hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccc
Confidence 34677776666553 24565544 5788888874 33468999999999999999999999
Q ss_pred cccCCCCCCCeecChhhHhhhhhh
Q 001236 673 AALAPNPGKPYRVCDCCFAKLNKV 696 (1117)
Q Consensus 673 ~~l~~~~~kp~RVC~~C~~~l~~~ 696 (1117)
+.+++. ..+|+|+.||..++-.
T Consensus 331 p~mg~e--~~vR~~~~c~~~i~~~ 352 (404)
T KOG1409|consen 331 PTMGFE--FSVRVCDSCYPTIKDE 352 (404)
T ss_pred ccccce--eEEEEecccchhhhcC
Confidence 888887 7899999999999764
No 33
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.24 E-value=0.0022 Score=60.71 Aligned_cols=93 Identities=22% Similarity=0.194 Sum_probs=61.5
Q ss_pred eEEEEecC-CcCeeEeEEEeCCCCEEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcc
Q 001236 26 QLLKYGRK-GKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKR 100 (1117)
Q Consensus 26 ~llK~~r~-~kpk~r~f~Ls~d~~~l~W~s~~----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~r 100 (1117)
.|.|-+.. +.=+.|+|.|.++...|.+++.. ....|+|.++..|...+.... -+.......+|.|.. ..|
T Consensus 4 ~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~---~~~~~~~~~~f~i~t--~~r 78 (101)
T cd01235 4 YLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMG---APKHTSRKGFFDLKT--SKR 78 (101)
T ss_pred EEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCC---CCCCCCCceEEEEEe--CCc
Confidence 35555432 23377899999988888886643 345688888777765332210 011122345566654 459
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHH
Q 001236 101 SLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 101 tLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
++-|.|++++|++.|+..|+.+|
T Consensus 79 ~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 79 TYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eEEEECCCHHHHHHHHHHHHhhC
Confidence 99999999999999999998764
No 34
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.16 E-value=0.00086 Score=64.70 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=54.8
Q ss_pred CcCeeEeEEEeCCCCEEEEecCCC------CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeC
Q 001236 34 GKPKFYPFRLSNDETSLIWISSSG------ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICK 107 (1117)
Q Consensus 34 ~kpk~r~f~Ls~d~~~l~W~s~~~------~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~ 107 (1117)
.| |.|+|.|. ..+|.|++... ...|+|..+..|..-..... .........||.|+..+ |++-|.|.
T Consensus 20 nw-KkRwFvL~--~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~---~~~~~~~~~~F~i~t~~--r~~yl~A~ 91 (106)
T cd01238 20 NY-KERLFVLT--KSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKN---PPIPERFKYPFQVVHDE--GTLYVFAP 91 (106)
T ss_pred Cc-eeEEEEEc--CCEEEEECCCcccccCcceeEECCcceEEEEecCCcC---cccccccCccEEEEeCC--CeEEEEcC
Confidence 44 66889995 45788865432 34688888766654222110 00112235799999954 89999999
Q ss_pred CHHHHHHHHHHHHH
Q 001236 108 DKVEAEVWIAGLKA 121 (1117)
Q Consensus 108 ~~~ea~~Wv~GL~~ 121 (1117)
+++|++.||..|+.
T Consensus 92 s~~er~~WI~ai~~ 105 (106)
T cd01238 92 TEELRKRWIKALKQ 105 (106)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
No 35
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=96.91 E-value=0.0045 Score=59.88 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCcCeeEeEEEeCCCC-----EEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEE
Q 001236 33 KGKPKFYPFRLSNDET-----SLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLD 103 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d~~-----~l~W~s~~----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLD 103 (1117)
+.| |.|+|.|..+.. .|.+++.. ..+.|+|..+..|..+.... .........|.|.. ..|++-
T Consensus 17 ~~W-krRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~-----~~~~~~~~~f~i~t--~~r~y~ 88 (108)
T cd01266 17 TKW-VRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCT-----AGNCIFGYGFDIET--IVRDLY 88 (108)
T ss_pred cCc-EEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEccccccc-----ccCcccceEEEEEe--CCccEE
Confidence 344 788999986653 46675442 34678888877765543221 01112235677775 459999
Q ss_pred EEeCCHHHHHHHHHHHHHH
Q 001236 104 LICKDKVEAEVWIAGLKAL 122 (1117)
Q Consensus 104 Lva~~~~ea~~Wv~GL~~L 122 (1117)
|+|++++|++.||..|+.|
T Consensus 89 l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 89 LVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEECCHHHHHHHHHHHHhh
Confidence 9999999999999999764
No 36
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.88 E-value=0.0056 Score=55.81 Aligned_cols=91 Identities=25% Similarity=0.318 Sum_probs=61.9
Q ss_pred hcCCeEEEEe-cCCcCeeEeEEEeCCCCEEEEecCC-------CCcccccceeeecccccCChhHhhhcCCCCCCceEEE
Q 001236 22 KKGAQLLKYG-RKGKPKFYPFRLSNDETSLIWISSS-------GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSL 93 (1117)
Q Consensus 22 ~~Gt~llK~~-r~~kpk~r~f~Ls~d~~~l~W~s~~-------~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSI 93 (1117)
+.|-.+.+.. ..++.+.|+|.|..+ .|.+++.. ....++|.++ .|..+.+... .....+|.|
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~f~l 72 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNS--TLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-------AKKPHCFEI 72 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECC--EEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-------CCCceEEEE
Confidence 3455444444 356778888999874 44443322 2344666666 5555544432 344689999
Q ss_pred EEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 94 IYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 94 iy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
.+.++ ++|-|.|++++|++.|+..|+.++
T Consensus 73 ~~~~~-~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 73 KTADR-RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EecCC-ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 99764 699999999999999999998764
No 37
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.83 E-value=0.0057 Score=58.85 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=58.5
Q ss_pred EEecCCcCeeEeEEEeCCCCEEEEecC-----CCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEE
Q 001236 29 KYGRKGKPKFYPFRLSNDETSLIWISS-----SGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLD 103 (1117)
Q Consensus 29 K~~r~~kpk~r~f~Ls~d~~~l~W~s~-----~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLD 103 (1117)
..++|+| |.|.|.|..+ ..|.|... .+...|+|....+|..|.... ....||.|+..+ |+.-
T Consensus 18 ~~~~K~W-krRWFvL~~~-~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~---------~~~~~f~I~tp~--R~f~ 84 (104)
T cd01236 18 VHRSKRW-QRRWFILYDH-GLLTYALDEMPTTLPQGTIDMNQCTDVVDAEART---------GQKFSICILTPD--KEHF 84 (104)
T ss_pred ceeeccc-cceEEEEeCC-CEEEEeeCCCCCcccceEEEccceEEEeeccccc---------CCccEEEEECCC--ceEE
Confidence 3556777 6667888754 45666322 235678999888888776432 125799998854 9999
Q ss_pred EEeCCHHHHHHHHHHHHH
Q 001236 104 LICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 104 Lva~~~~ea~~Wv~GL~~ 121 (1117)
|+|++++|++.|+..|..
T Consensus 85 l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 85 IKAETKEEISWWLNMLMV 102 (104)
T ss_pred EEeCCHHHHHHHHHHHHh
Confidence 999999999999999864
No 38
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=96.81 E-value=0.0083 Score=55.66 Aligned_cols=91 Identities=25% Similarity=0.307 Sum_probs=64.4
Q ss_pred eEEEEe-cCCcCeeEeEEEeCCCCEEEEecCC------CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 26 QLLKYG-RKGKPKFYPFRLSNDETSLIWISSS------GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 26 ~llK~~-r~~kpk~r~f~Ls~d~~~l~W~s~~------~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
.|.|.+ ..++.+.|+|.|..+. -+.|.+.. ....++|.++ .|+.....+. ........||.|.+.++
T Consensus 6 ~L~~~~~~~~~wk~r~~vL~~~~-L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~----~~~~~~~~~f~i~~~~~ 79 (104)
T PF00169_consen 6 WLLKKSSSRKKWKKRYFVLRDSY-LLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDF----LSNKKRKNCFEITTPNG 79 (104)
T ss_dssp EEEEEESSSSSEEEEEEEEETTE-EEEESSTTTTTESSESEEEEGTTE-EEEEETSSTS----TSTSSSSSEEEEEETTS
T ss_pred EEEEECCCCCCeEEEEEEEECCE-EEEEecCccccceeeeEEEEecCc-eEEEcCcccc----ccccCCCcEEEEEeCCC
Confidence 455554 4566688999997743 23343332 2345777777 6766555542 13456789999999875
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+++-|.|+++++++.|+..|+..+
T Consensus 80 -~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 -KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp -EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred -cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999875
No 39
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.00037 Score=79.20 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=56.0
Q ss_pred eecccchhhccccccccccc-ccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhh
Q 001236 627 HKWVSSAEQLQCSACRQAFG-FTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1117)
Q Consensus 627 ~kwvs~~d~s~Cs~C~~~F~-f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~ 694 (1117)
..|........|++|...|. ..-+||||+.|+.++|-+|+--+.+.+.. +--..++|||+.|+-.|.
T Consensus 152 p~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p-~a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 152 PVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVP-FAADPLQRVLDSCAFNLE 219 (473)
T ss_pred ccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCC-cccCCHHHHHhhHhhccC
Confidence 57888888999999999998 77889999999999999998766655443 233468999999999984
No 40
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.75 E-value=0.01 Score=56.04 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=58.1
Q ss_pred CeEEEEec----CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 25 AQLLKYGR----KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 25 t~llK~~r----~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
..|.|.+. ++| +.|.|.|..+...|.|++... ...|+|..+..+.. +.....+|.|+..
T Consensus 3 GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~------------~~~~~~~F~i~t~ 69 (95)
T cd01265 3 GYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD------------PREEKGRFEIHSN 69 (95)
T ss_pred ccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC------------CCCCCCEEEEEcC
Confidence 36778754 355 778899988888898876543 23466655432211 1112468999875
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHHHH
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLKAL 122 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~L 122 (1117)
.|+..|.|.|++|++.||..|+..
T Consensus 70 --~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 --NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred --CcEEEEECCCHHHHHHHHHHHHhh
Confidence 489999999999999999999764
No 41
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.65 E-value=0.0095 Score=56.97 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=55.2
Q ss_pred eeEeEEEeCCCCEEEEecCC----CC-cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHH
Q 001236 37 KFYPFRLSNDETSLIWISSS----GE-RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVE 111 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~----~~-~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~e 111 (1117)
+.|+|.|. ...|.|++.. +. ..|+|.++..|+...+.. .......||.|++.+ ||.-|+|+|++|
T Consensus 20 krRwF~L~--~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~------~~~~~~~~Fei~tp~--rt~~l~A~se~e 89 (101)
T cd01264 20 KTRYFTLS--GAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKR------RDRSLPKAFEIFTAD--KTYILKAKDEKN 89 (101)
T ss_pred eeEEEEEe--CCEEEEEeccCccCCCCceEEcccceEEeeccccc------cccccCcEEEEEcCC--ceEEEEeCCHHH
Confidence 67889998 3457775443 23 578999998888764331 111225699999965 999999999999
Q ss_pred HHHHHHHHHH
Q 001236 112 AEVWIAGLKA 121 (1117)
Q Consensus 112 a~~Wv~GL~~ 121 (1117)
++.|+..|..
T Consensus 90 ~e~WI~~i~~ 99 (101)
T cd01264 90 AEEWLQCLNI 99 (101)
T ss_pred HHHHHHHHHh
Confidence 9999998863
No 42
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=96.56 E-value=0.013 Score=55.96 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=57.5
Q ss_pred HhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 21 LKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 21 L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
|++|-...|-+..+.=+.|+|.|.. ..|.+++..+ ...|+|.++.-...-...+. .....||.|+..
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~--~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~-------~~~~~~F~I~t~ 73 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRR--PYLHIYRSDKDPVERGVINLSTARVEHSEDQAAM-------VKGPNTFAVCTK 73 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEEC--CEEEEEccCCCccEeeEEEecccEEEEccchhhh-------cCCCcEEEEECC
Confidence 4565554444443334788899986 4677755533 23455554321111000000 112469999764
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
.|++-|.|++++|++.|+..|+.++.
T Consensus 74 --~rt~~~~A~s~~e~~~Wi~ai~~~~~ 99 (100)
T cd01233 74 --HRGYLFQALSDKEMIDWLYALNPLYA 99 (100)
T ss_pred --CCEEEEEcCCHHHHHHHHHHhhhhhc
Confidence 59999999999999999999998873
No 43
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.39 E-value=0.012 Score=53.09 Aligned_cols=77 Identities=25% Similarity=0.210 Sum_probs=52.1
Q ss_pred CcCeeEeEEEeCCCCEEEEecCC-----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCC
Q 001236 34 GKPKFYPFRLSNDETSLIWISSS-----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKD 108 (1117)
Q Consensus 34 ~kpk~r~f~Ls~d~~~l~W~s~~-----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~ 108 (1117)
+..+.|+|.|..+...+.-.... ....++|.+ ..|....... ....+|.|++.++ +.+.|.|++
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~---------~~~~~f~i~~~~~-~~~~~~~~s 82 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS---------GRKNCFEIRTPDG-RSYLLQAES 82 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC---------CCCcEEEEecCCC-cEEEEEeCC
Confidence 44577888888765555332221 223455554 3444433332 4578999999765 899999999
Q ss_pred HHHHHHHHHHHHH
Q 001236 109 KVEAEVWIAGLKA 121 (1117)
Q Consensus 109 ~~ea~~Wv~GL~~ 121 (1117)
.+|++.|+..|+.
T Consensus 83 ~~~~~~W~~~l~~ 95 (96)
T cd00821 83 EEEREEWIEALQS 95 (96)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 44
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.33 E-value=0.025 Score=54.07 Aligned_cols=91 Identities=22% Similarity=0.279 Sum_probs=56.0
Q ss_pred HhcCCeEEEEecC-CcCeeEeEEEeCCCCEEEEecCCC---Cccc---ccceeeecccccCChhHhhhcCCCCCCceEEE
Q 001236 21 LKKGAQLLKYGRK-GKPKFYPFRLSNDETSLIWISSSG---ERSL---KLASVSKIIPGQRTAVFQRYLRPEKDYLSFSL 93 (1117)
Q Consensus 21 L~~Gt~llK~~r~-~kpk~r~f~Ls~d~~~l~W~s~~~---~~~l---~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSI 93 (1117)
++.|. |+|.+++ .+++.|+|.|-.| . |.+.+.+. .... ...+|..+..-... ......+|.|
T Consensus 3 ikeG~-L~K~~~~~~~~k~RyffLFnd-~-Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~--------~~~~~~~F~I 71 (101)
T cd01219 3 LKEGS-VLKISSTTEKTEERYLFLFND-L-LLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD--------NLERPHSFLV 71 (101)
T ss_pred ccceE-EEEEecCCCCceeEEEEEeCC-E-EEEEEcccccCCCcEEEEEEEecccEEEEeCC--------CCCcCceEEE
Confidence 45554 4677664 5788999999888 4 44433221 1111 11222222221100 1223578998
Q ss_pred EEcCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 94 IYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 94 iy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
.-. .|++.|.|++++|.+.|+..|+..|.
T Consensus 72 ~~~--~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 72 SGK--QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred ecC--CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 664 49999999999999999999998764
No 45
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=96.26 E-value=0.042 Score=51.62 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=51.8
Q ss_pred eEEEEec--CCcCeeEeEEEeCCCCEEEEecCCCC------cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC
Q 001236 26 QLLKYGR--KGKPKFYPFRLSNDETSLIWISSSGE------RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1117)
Q Consensus 26 ~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~~------~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~ 97 (1117)
.|.|.+. ++| +.|+|.|. ...|.|++.+.+ ..|+|....-+ ....+...|.|+-.+
T Consensus 4 ~L~K~~~~~k~W-k~RwFvL~--~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~-------------~~~~~~~~F~i~~~~ 67 (91)
T cd01247 4 VLSKWTNYINGW-QDRYFVLK--EGNLSYYKSEAEKSHGCRGSIFLKKAIIA-------------AHEFDENRFDISVNE 67 (91)
T ss_pred EEEEeccccCCC-ceEEEEEE--CCEEEEEecCccCcCCCcEEEECcccEEE-------------cCCCCCCEEEEEeCC
Confidence 5677754 455 67889994 467777655432 33444432111 112235789987654
Q ss_pred CcceEEEEeCCHHHHHHHHHHHH
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~ 120 (1117)
.+++.|.|.+++|++.||..|+
T Consensus 68 -~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 68 -NVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred -CeEEEEEeCCHHHHHHHHHHHh
Confidence 4999999999999999999986
No 46
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.19 E-value=0.031 Score=53.39 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=56.3
Q ss_pred HhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCC---C-----CcccccceeeecccccCChhHhhhcCCCCCCceEE
Q 001236 21 LKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSS---G-----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1117)
Q Consensus 21 L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~---~-----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1117)
++.|. |+|+++++ ++.|+|.|=.|. |.+.... + ...++|.++. |+...+. .....||.
T Consensus 3 ikEG~-L~K~~~k~-~~~R~~FLFnD~--LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~---------~~~~~~F~ 68 (99)
T cd01220 3 IRQGC-LLKLSKKG-LQQRMFFLFSDL--LLYTSKSPTDQNSFRILGHLPLRGML-TEESEHE---------WGVPHCFT 68 (99)
T ss_pred eeEEE-EEEEeCCC-CceEEEEEccce--EEEEEeecCCCceEEEEEEEEcCceE-EeeccCC---------cCCceeEE
Confidence 44554 57787765 677888888873 3343221 1 1235555552 3332221 11236999
Q ss_pred EEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 93 LIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 93 Iiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
|. +..+++-|.|++++|.+.|+..|+.-|
T Consensus 69 I~--~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 69 IF--GGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EE--cCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 98 456999999999999999999998765
No 47
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=95.55 E-value=0.09 Score=50.47 Aligned_cols=88 Identities=19% Similarity=0.358 Sum_probs=56.7
Q ss_pred eEEEEec---CCcCeeEeEEEeCCCCEEEEecCCC----Ccccccceee---ecccccCChhHhhhcCCCCCCceEEEEE
Q 001236 26 QLLKYGR---KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVS---KIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 26 ~llK~~r---~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~---eI~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
.|.|-+. ++| |.|+|.|. ...|.|++... ...|+|.++. +|..+..... ......+|.|+.
T Consensus 4 ~L~K~g~~~~k~w-kkRwFvL~--~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~------~~~~~~~F~i~t 74 (103)
T cd01251 4 FMEKTGPKHTEGF-KKRWFTLD--DRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT------QGNHWYGVTLVT 74 (103)
T ss_pred eEEecCCCCCCCc-eeEEEEEe--CCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc------cccccceEEEEe
Confidence 4566543 344 78889997 45677865532 3346665443 2332211100 011124999888
Q ss_pred cCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 96 NNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
. .|+.-|.|++++|++.|+..|+..|.
T Consensus 75 ~--~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 75 P--ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred C--CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 5 59999999999999999999998874
No 48
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.33 E-value=0.12 Score=47.65 Aligned_cols=32 Identities=16% Similarity=0.443 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~ 120 (1117)
...||.|+..+ +++-|.|++.+|++.|+..|+
T Consensus 61 ~~~~f~i~~~~--~~~~f~a~s~~~~~~Wi~al~ 92 (94)
T cd01250 61 RRFCFEVISPT--KTWHFQADSEEERDDWISAIQ 92 (94)
T ss_pred CceEEEEEcCC--cEEEEECCCHHHHHHHHHHHh
Confidence 35799999866 999999999999999999986
No 49
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=95.22 E-value=0.13 Score=46.50 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=52.9
Q ss_pred CcCeeEeEEEeCCCCEEEEecCCCC-----cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC-CcceEEEEeC
Q 001236 34 GKPKFYPFRLSNDETSLIWISSSGE-----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN-GKRSLDLICK 107 (1117)
Q Consensus 34 ~kpk~r~f~Ls~d~~~l~W~s~~~~-----~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~-~~rtLDLva~ 107 (1117)
+..+.|+|.|..+ .|..++.... ..+++..+. |..+.... ....+|.|++.. ..+.+-|.|+
T Consensus 17 ~~w~~~~~~l~~~--~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~---------~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 17 KRWKRRWFFLFDD--GLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS---------DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred cCceeeEEEEECC--EEEEEEcCCCCcCCCCEEEccceE-EEECCCCC---------CCCceEEEECCCCCcEEEEEEcC
Confidence 5567888888754 4555444321 246666666 55554432 235799999975 3689999999
Q ss_pred CHHHHHHHHHHHHH
Q 001236 108 DKVEAEVWIAGLKA 121 (1117)
Q Consensus 108 ~~~ea~~Wv~GL~~ 121 (1117)
+.+|++.|+..|+.
T Consensus 85 ~~~~~~~W~~al~~ 98 (99)
T cd00900 85 SEEEAQEWVEALQQ 98 (99)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999863
No 50
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.10 E-value=0.13 Score=47.30 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=49.7
Q ss_pred EEEEe-cCCcCeeEeEEEeCCCCEEEEecCCCC------cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCc
Q 001236 27 LLKYG-RKGKPKFYPFRLSNDETSLIWISSSGE------RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGK 99 (1117)
Q Consensus 27 llK~~-r~~kpk~r~f~Ls~d~~~l~W~s~~~~------~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~ 99 (1117)
|.|.+ ..+.-+.|+|.|. ...|.+++.... ..+.|.... |.. ......+|.|...+ .
T Consensus 5 L~k~~~~~~~W~~r~~vl~--~~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~------------~~~~~~~F~i~~~~-~ 68 (91)
T cd01246 5 LLKWTNYLKGWQKRWFVLD--NGLLSYYKNKSSMRGKPRGTILLSGAV-ISE------------DDSDDKCFTIDTGG-D 68 (91)
T ss_pred EEEecccCCCceeeEEEEE--CCEEEEEecCccCCCCceEEEEeceEE-EEE------------CCCCCcEEEEEcCC-C
Confidence 45543 3344588889997 346666444332 223443321 111 11125799998743 3
Q ss_pred ceEEEEeCCHHHHHHHHHHHHH
Q 001236 100 RSLDLICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 100 rtLDLva~~~~ea~~Wv~GL~~ 121 (1117)
+++-|.|++.+|++.|+..|+.
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHh
Confidence 8999999999999999999874
No 51
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.01 E-value=0.092 Score=49.36 Aligned_cols=74 Identities=31% Similarity=0.511 Sum_probs=50.1
Q ss_pred CCcCeeEeEEEeCCCCEEEEecCCCC----ccccccee--eecccccCChhHhhhcCCCCCCceEEEEEcC------Ccc
Q 001236 33 KGKPKFYPFRLSNDETSLIWISSSGE----RSLKLASV--SKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN------GKR 100 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I--~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~------~~r 100 (1117)
+|-.|.|.|.|..+ +|.|++-..+ --|+|..+ ++|..|--+ ...||.|.+-+ ..|
T Consensus 16 ~ggsK~~WFVLt~~--~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~s-----------k~~~FeLfnpd~rnvykd~k 82 (110)
T cd01256 16 KGGSKDYWFVLTSE--SLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMS-----------RNHKFALFYPDGRNVYKDYK 82 (110)
T ss_pred cCCCcceEEEEecc--eeeeecccccccccceeeccccEEEeecccccC-----------CCcEEEEEcCcccccccchh
Confidence 45567888888775 5678554322 24777654 455444222 13789987643 358
Q ss_pred eEEEEeCCHHHHHHHHHHH
Q 001236 101 SLDLICKDKVEAEVWIAGL 119 (1117)
Q Consensus 101 tLDLva~~~~ea~~Wv~GL 119 (1117)
+|+|.|.+.||.+.|...+
T Consensus 83 ~lel~~~~~e~vdswkasf 101 (110)
T cd01256 83 QLELGCETLEEVDSWKASF 101 (110)
T ss_pred eeeecCCCHHHHHHHHHHH
Confidence 9999999999999998754
No 52
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.91 E-value=2.5 Score=51.03 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=51.9
Q ss_pred CEEEEEecC-ceEEEEEcCCcEEE-EeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEE
Q 001236 284 DVHHIACGV-RHAALVTRQGEVFT-WGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYT 358 (1117)
Q Consensus 284 ~I~~Ia~G~-~Hs~~LT~dG~Vys-wG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~Vys 358 (1117)
++.+|++|- .-..+||.+|.||. .|-....+.|..-. ++..|... ..++.|+.|....-+||.+|.||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a-----~~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQA-----LEPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCcccc-----cceEEEEeccceEEEEecCCcEEE
Confidence 678999999 66779999999874 56555555555433 44445433 238999999999999999999986
No 53
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=94.76 E-value=0.0079 Score=71.66 Aligned_cols=65 Identities=26% Similarity=0.527 Sum_probs=55.4
Q ss_pred chhhccccccccccc-ccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhhccc
Q 001236 632 SAEQLQCSACRQAFG-FTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSEA 699 (1117)
Q Consensus 632 ~~d~s~Cs~C~~~F~-f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~~~~ 699 (1117)
......|..|...|+ .+.+||+|..||.+.|..|+..+. .+.++.....|||..||.....+..+
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~---~l~~~~s~ssrv~~~~~~~~~~a~~s 477 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMA---KLSYDNSRSSRVCMDRYLTPSGAPGS 477 (623)
T ss_pred ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhh---hhcccccchhhhhhhhccCCCCCCCC
Confidence 556778999999997 778999999999999999998544 56667778999999999988887665
No 54
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=94.71 E-value=0.23 Score=47.66 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=56.2
Q ss_pred eEEEEecCCcCeeEeEEEeCCC----CEEEEecCC---------CCcccccceeeecccccCChhHhhhcCCCCCCceEE
Q 001236 26 QLLKYGRKGKPKFYPFRLSNDE----TSLIWISSS---------GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1117)
Q Consensus 26 ~llK~~r~~kpk~r~f~Ls~d~----~~l~W~s~~---------~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1117)
.|.|- +.+ |.|+|.|..+. ..|.|++.. +.+.|+|.++..|..-. ......+|.
T Consensus 7 yL~K~--K~~-kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~----------d~k~~~~f~ 73 (101)
T cd01257 7 YLRKQ--KSM-HKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRA----------DAKHRHLIA 73 (101)
T ss_pred EEeEe--cCc-EeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecc----------ccccCeEEE
Confidence 45554 333 66889998662 378886553 23468888887765211 122347899
Q ss_pred EEEcCCcceEEEEeCCHHHHHHHHHHHHH
Q 001236 93 LIYNNGKRSLDLICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 93 Iiy~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1117)
|+..+ ++.-|+|++++|.+.|+..|.-
T Consensus 74 i~t~d--r~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 74 LYTRD--EYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEeCC--ceEEEEeCCHHHHHHHHHHHhh
Confidence 98854 8999999999999999998854
No 55
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.50 E-value=1.2 Score=59.68 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=70.3
Q ss_pred cccCCCCEEEEE-ecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcc-eeeecCCe
Q 001236 500 PALIDYNFHKVA-CGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHV-AVLTSRNE 577 (1117)
Q Consensus 500 ~~l~~~~I~~Ia-~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht-~aLT~dG~ 577 (1117)
..+.+..|..++ .+.++.++|++.|++-..- .- -.|..+...-....|+.|++-..|. +++|.+|+
T Consensus 698 ~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~-----k~-------g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~ 765 (1774)
T PF11725_consen 698 EGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ-----KP-------GRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGE 765 (1774)
T ss_pred cCCCcCcceeEEEEcCCceEEeccCCcccccc-----CC-------CCCccCCCCCCCcchhheeeccccceeEecCCCc
Confidence 344444555554 4667888888888766532 11 1144444332356899999998876 78999999
Q ss_pred EEE-----EeCCCCCCCCCCCCCCCcccEEeccccCceEEEeecCCCcceeEEee
Q 001236 578 VYT-----WGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICLH 627 (1117)
Q Consensus 578 Vy~-----WG~n~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~VacG~~hT~aL~~~ 627 (1117)
+|. |-.+..| +. ....-++|....+..|..+....+|.+.+...
T Consensus 766 Lf~~~k~~WQ~~~~~-----~~-~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~ 814 (1774)
T PF11725_consen 766 LFRLPKEAWQGNAEG-----DQ-MAAKWQKVALPDEQPVKSLRTNDDNHLSAQIE 814 (1774)
T ss_pred eeecCHHHhhCcccC-----Cc-cccCceeccCCCCCchhhhhcCCCCceEEEec
Confidence 998 5444433 11 11344455555677889999999998888753
No 56
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.45 E-value=0.22 Score=47.72 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=50.6
Q ss_pred hcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCCCc---ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 22 KKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGER---SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 22 ~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~~~---~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
+.|-+..+-...+.=+.|+|.|.+|...+.|.+..... .++|..+. |..+ ... ..+.....+|.|...+-
T Consensus 3 k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~-v~~~-~~~-----~~~~~~~~~F~i~~~~~ 75 (102)
T cd01241 3 KEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFS-VAEC-QLM-----KTERPRPNTFIIRCLQW 75 (102)
T ss_pred EEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeE-Eeee-eee-----eccCCCcceEEEEeccC
Confidence 44444444333333478899999876666665433222 23433331 1111 000 00112235899984321
Q ss_pred cceE--EEEeCCHHHHHHHHHHHHHH
Q 001236 99 KRSL--DLICKDKVEAEVWIAGLKAL 122 (1117)
Q Consensus 99 ~rtL--DLva~~~~ea~~Wv~GL~~L 122 (1117)
..++ -+.|++++|.+.|+..|+.+
T Consensus 76 ~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 76 TTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 1122 45799999999999999865
No 57
>PF15409 PH_8: Pleckstrin homology domain
Probab=94.35 E-value=0.35 Score=45.24 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=52.2
Q ss_pred eEEEEec-C--CcCeeEeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceE
Q 001236 26 QLLKYGR-K--GKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSL 102 (1117)
Q Consensus 26 ~llK~~r-~--~kpk~r~f~Ls~d~~~l~W~s~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtL 102 (1117)
.|+|=++ + |+ +.|||.|+.+...|.++....+. .+..--.|... . -...+..++|.|-- +...-
T Consensus 2 ~llKkrr~~lqG~-~kRyFvL~~~~G~LsYy~~~~~~--~~rGsi~v~~a--~------is~~~~~~~I~ids--g~~i~ 68 (89)
T PF15409_consen 2 WLLKKRRKPLQGW-HKRYFVLDFEKGTLSYYRNQNSG--KLRGSIDVSLA--V------ISANKKSRRIDIDS--GDEIW 68 (89)
T ss_pred cceeeccccCCCc-eeEEEEEEcCCcEEEEEecCCCC--eeEeEEEccce--E------EEecCCCCEEEEEc--CCeEE
Confidence 3555433 2 43 78999999888999997654332 11111111111 0 00123456677754 55789
Q ss_pred EEEeCCHHHHHHHHHHHHH
Q 001236 103 DLICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 103 DLva~~~~ea~~Wv~GL~~ 121 (1117)
+|-|.++++++.|+..|+.
T Consensus 69 hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 69 HLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEcCCHHHHHHHHHHHHh
Confidence 9999999999999999985
No 58
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.14 E-value=0.35 Score=47.99 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=54.2
Q ss_pred eEEEEec-CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC--
Q 001236 26 QLLKYGR-KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG-- 98 (1117)
Q Consensus 26 ~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~-- 98 (1117)
.|.|-+. .+.-+.|+|.|.++ .|.|++... ...|+|.++. |..... .....||.|+..++
T Consensus 5 ~L~K~~~~~~~WkkRwfvL~~~--~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~----------~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 5 WLLKQGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENVS-IREVED----------PSKPFCFELFSPSDKQ 71 (125)
T ss_pred EEEEeCCCCCCeEeEEEEEECC--EEEEEcCCCCCCceEEEECCCcE-EEEccc----------CCCCeeEEEECCcccc
Confidence 4455532 23337888999754 577765432 3346666432 222111 11245777665432
Q ss_pred -----------------cceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 99 -----------------KRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 99 -----------------~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
.++.-|.|++++|++.|+..|+..+..+
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 3567799999999999999999988543
No 59
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.39 E-value=0.27 Score=61.36 Aligned_cols=105 Identities=16% Similarity=0.307 Sum_probs=80.3
Q ss_pred HHHHHhcCCeEEEEec---CCcCeeEeEEEeCCCCEEEEecC-CCCcccccceeeecccccCChhHhh---------hc-
Q 001236 17 ALIALKKGAQLLKYGR---KGKPKFYPFRLSNDETSLIWISS-SGERSLKLASVSKIIPGQRTAVFQR---------YL- 82 (1117)
Q Consensus 17 ~l~~L~~Gt~llK~~r---~~kpk~r~f~Ls~d~~~l~W~s~-~~~~~l~l~~I~eI~~G~~t~~f~r---------~~- 82 (1117)
....|+.|+.|+|+-- -+.| -.+++++.+-.|.|... ++--.+++..|++.|.|+....=.+ -.
T Consensus 13 v~~~L~~G~~fikwddest~~~~--v~lrvDp~gffLYW~~q~~e~~~ldi~~i~d~r~g~~a~~pkd~klr~~~~~~~~ 90 (1189)
T KOG1265|consen 13 VTDILRDGSKFIKWDDESTTSTP--VTLRVDPNGFFLYWTYQNKEVDNLDISSIRDARTGRYAKLPKDPKLREVLELGPP 90 (1189)
T ss_pred ccHHHcCCceEEEeccccccccc--eEEEECCCceEEEEecCCCceeehhhhHHhhhhcchhccCCCCcccchheecCCc
Confidence 4567999999999933 3445 56899999999999544 4556789999999999965532111 11
Q ss_pred CCCCCCceEEEEEcCC---cceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 83 RPEKDYLSFSLIYNNG---KRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 83 ~~~~~~~~FSIiy~~~---~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
....+....+|+++.. ...++|||-.++++.+|..||-.|+
T Consensus 91 d~s~eek~lTVvsG~d~vN~~f~nfv~~~~~~ak~w~~~~~~l~ 134 (1189)
T KOG1265|consen 91 DRSLEEKTLTVVSGPDLVNLTFLNFVAMQENVAKLWTAGLLKLA 134 (1189)
T ss_pred ccccccceEEEEecCCcccceEEEEeeeeHHHHHHHHHHHHHHH
Confidence 1145678899999875 5779999999999999999998887
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=93.24 E-value=0.54 Score=44.16 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=46.7
Q ss_pred CeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHH
Q 001236 36 PKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVE 111 (1117)
Q Consensus 36 pk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~e 111 (1117)
=+.|+|.|.. ..|.+++... ...|+|... .|..- .+.....||.|... ..+++-|.|++++|
T Consensus 20 WkkrwfvL~~--~~L~yyk~~~~~~~~~~I~L~~~-~v~~~----------~~~~k~~~F~I~~~-~~~~~~f~a~s~~e 85 (96)
T cd01260 20 WARRWFVLKG--TTLYWYRSKQDEKAEGLIFLSGF-TIESA----------KEVKKKYAFKVCHP-VYKSFYFAAETLDD 85 (96)
T ss_pred ceeEEEEEEC--CEEEEECCCCCCccceEEEccCC-EEEEc----------hhcCCceEEEECCC-CCcEEEEEeCCHHH
Confidence 4778899984 4666654433 234555433 12111 11223568999853 34899999999999
Q ss_pred HHHHHHHHHH
Q 001236 112 AEVWIAGLKA 121 (1117)
Q Consensus 112 a~~Wv~GL~~ 121 (1117)
++.|+..|+.
T Consensus 86 ~~~Wi~ai~~ 95 (96)
T cd01260 86 LSQWVNHLIT 95 (96)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 61
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=91.37 E-value=0.03 Score=66.59 Aligned_cols=66 Identities=29% Similarity=0.712 Sum_probs=50.6
Q ss_pred eeecccch----hhcccccc-cccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhh
Q 001236 626 LHKWVSSA----EQLQCSAC-RQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKL 693 (1117)
Q Consensus 626 ~~kwvs~~----d~s~Cs~C-~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l 693 (1117)
.+.|+++. ....|+.| +..|....++|||++||...|.+|..++....--+. ..|.++|+.|+..-
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gs--e~~Adg~Dq~psvs 383 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGS--ENPADGCDQCPSVS 383 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccc--cCcccccccccchh
Confidence 35777776 56678776 456777778999999999999999988776554333 47899999999643
No 62
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=91.11 E-value=1.6 Score=42.64 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=44.3
Q ss_pred EEEEecC-CcC-eeEeEEEeCCCCEEEEecCC-CCc--ccccceeeec-ccc---cCChhHhhh------cCCCCCCceE
Q 001236 27 LLKYGRK-GKP-KFYPFRLSNDETSLIWISSS-GER--SLKLASVSKI-IPG---QRTAVFQRY------LRPEKDYLSF 91 (1117)
Q Consensus 27 llK~~r~-~kp-k~r~f~Ls~d~~~l~W~s~~-~~~--~l~l~~I~eI-~~G---~~t~~f~r~------~~~~~~~~~F 91 (1117)
|.|-..+ ++. +.|+|-|.. ...|.+++.. ... .|.......+ +.| ...+.+... .........|
T Consensus 5 l~K~~~~~~kgWk~RwFiL~k-~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (112)
T PF15413_consen 5 LYKWGNKFGKGWKKRWFILRK-DGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVF 83 (112)
T ss_dssp EEE--TTS-S--EEEEEEEE--TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEEE
T ss_pred EEEecCCCCcCccccEEEEEe-CCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCCc
Confidence 4555444 333 678898987 6777786651 111 1111111111 111 111122111 1124455677
Q ss_pred EEEEcCCcceEEEEeCCHHHHHHHHHHHHH
Q 001236 92 SLIYNNGKRSLDLICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 92 SIiy~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1117)
+|.- +.|+|.|.|.+.+|...|+..|+.
T Consensus 84 ~i~T--~~kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 84 SIFT--PTKTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEE---SS-EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEC--CCcEEEEEECCHHHHHHHHHHHHh
Confidence 7744 469999999999999999999874
No 63
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.10 E-value=2.1 Score=41.91 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=58.2
Q ss_pred HHhcCCeEEEEe-cCCcCeeEeEEEeCCCCEEEEecCCCCc--------cccccee-----eecccccCChhHhhhcCCC
Q 001236 20 ALKKGAQLLKYG-RKGKPKFYPFRLSNDETSLIWISSSGER--------SLKLASV-----SKIIPGQRTAVFQRYLRPE 85 (1117)
Q Consensus 20 ~L~~Gt~llK~~-r~~kpk~r~f~Ls~d~~~l~W~s~~~~~--------~l~l~~I-----~eI~~G~~t~~f~r~~~~~ 85 (1117)
.++.|.. +|+. ++++++.|+|.|=.|.. |......... ...+.+. -+|..-.+++
T Consensus 4 lI~EG~L-~ki~~~~~~~q~R~~FLFd~~L-i~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~--------- 72 (112)
T cd01261 4 FIMEGTL-TRVGPSKKAKHERHVFLFDGLM-VLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS--------- 72 (112)
T ss_pred ccccCcE-EEEecccCCcceEEEEEecCeE-EEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc---------
Confidence 3455655 5775 36778899999977755 4343221111 1222222 1222222222
Q ss_pred CCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 86 ~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.....|-|+-.. .+++-|.|++++|-+-|+..|..++.+
T Consensus 73 ~~knaF~I~~~~-~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 73 EYKNAFEIILKD-GNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred ccCceEEEEcCC-CCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 225789998754 479999999999999999999887743
No 64
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.67 E-value=2.2 Score=41.18 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=54.4
Q ss_pred eEEEEecCCcCeeEeEEEeCCCCEEEEecC----CC---CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 26 QLLKYGRKGKPKFYPFRLSNDETSLIWISS----SG---ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 26 ~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~----~~---~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
.|+|+.++ +|+.|+|.|=.| .|.+.+. ++ ...++|.++. |+.-.+. ..-..+|.|.-.
T Consensus 9 ~L~K~~rk-~~~~R~ffLFnD--~LvY~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~---------~~~~n~f~I~~~-- 73 (104)
T cd01218 9 VLTKMCRK-KPKQRQFFLFND--ILVYGNIVISKKKYNKQHILPLEGVQ-VESIEDD---------GIERNGWIIKTP-- 73 (104)
T ss_pred cEEEeecC-CCceEEEEEecC--EEEEEEeecCCceeeEeeEEEccceE-EEecCCc---------ccccceEEEecC--
Confidence 46788865 467788999888 5556332 11 1234554441 1111111 112467887764
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.|+.-+.|.+++|-..|+..|+.-+.+
T Consensus 74 ~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999877743
No 65
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.24 E-value=2.3 Score=40.63 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=47.3
Q ss_pred eeEeEEEeC--CCCEEEEecCC-CCc---ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHH
Q 001236 37 KFYPFRLSN--DETSLIWISSS-GER---SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKV 110 (1117)
Q Consensus 37 k~r~f~Ls~--d~~~l~W~s~~-~~~---~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ 110 (1117)
|.|+|.|.. ...+|.+.+.. ..+ -+++..+ .|++-+++. .....||-|+...+ .+.-.+|.+.+
T Consensus 17 K~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~ds~--------~~r~~cFel~~~~~-~~~y~~~a~~~ 86 (98)
T cd01245 17 KTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHDSL--------FGRPNCFQIVERAL-PTVYYSCRSSE 86 (98)
T ss_pred ceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccccc--------cCCCeEEEEecCCC-CeEEEEeCCHH
Confidence 668888853 45677664433 222 3455555 555544431 12248999987543 25567777779
Q ss_pred HHHHHHHHHHH
Q 001236 111 EAEVWIAGLKA 121 (1117)
Q Consensus 111 ea~~Wv~GL~~ 121 (1117)
|++.|+..|++
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 66
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.39 E-value=2.3 Score=42.04 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=48.0
Q ss_pred eeEeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEA 112 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea 112 (1117)
+.|.|.|. ...|.+.+.... ..|.++.--.|..|.....-.....+.....-+.|...+..|+|-|.|.|+.++
T Consensus 34 ~kRWFvlr--~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~ 111 (121)
T cd01254 34 QKRWFIVK--ESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKL 111 (121)
T ss_pred cceeEEEe--CCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHH
Confidence 55667776 356666444322 234455445555555542211111111122234444455779999999999999
Q ss_pred HHHHHHHHH
Q 001236 113 EVWIAGLKA 121 (1117)
Q Consensus 113 ~~Wv~GL~~ 121 (1117)
+.|+..|+.
T Consensus 112 ~~Wi~~i~~ 120 (121)
T cd01254 112 KQWMASIED 120 (121)
T ss_pred HHHHHHHHh
Confidence 999999863
No 67
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=88.14 E-value=26 Score=42.86 Aligned_cols=107 Identities=17% Similarity=0.207 Sum_probs=64.9
Q ss_pred ecCceEEEEEcCCcEEEEeCCCCCccCCCCCCcee-ccEEeccCCCCCeEEEEecC-CeEEEEEcCCcEEE-EcCCCCCC
Q 001236 290 CGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIV-QPHLLESLTMTSVDFVTCGE-FHTCAVTMAGELYT-WGDGTHNA 366 (1117)
Q Consensus 290 ~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~-~P~~V~~l~~~~I~~Va~G~-~hs~aLT~dG~Vys-WG~n~~~~ 366 (1117)
.|..-+.+|+.+|++|.= -|.......- .-+.|.. ...+.+|++|. ....+|+.+|.||. .|-. .+
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~--~t~L~qISagPtg~VwAvt~nG~vf~R~GVs--Rq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICP--YTDLSQISAGPTGVVWAVTENGAVFYREGVS--RQ 258 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCC--CCccceEeecCcceEEEEeeCCcEEEEeccc--cc
Confidence 455666778888887742 1222111111 1112211 23578999999 77789999999864 4443 33
Q ss_pred CccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEE
Q 001236 367 GLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTF 414 (1117)
Q Consensus 367 GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~w 414 (1117)
.+.|..=. +..+|+.. ..++.|+.|....-+||.+|.||.=
T Consensus 259 Np~GdsWk-dI~tP~~a------~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQA------LEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCCCchhh-hccCcccc------cceEEEEeccceEEEEecCCcEEEE
Confidence 44443211 22333332 2499999999999999999999853
No 68
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.43 E-value=5.1 Score=38.97 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=35.6
Q ss_pred cCCCCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 82 LRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 82 ~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+....-.+-|-|.|.+..++|-|.|++++|.+.||..|..-|
T Consensus 69 a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 69 ADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 444555688999998878999999999999999999997654
No 69
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=87.30 E-value=0.94 Score=55.78 Aligned_cols=95 Identities=23% Similarity=0.330 Sum_probs=66.8
Q ss_pred HhcCCeEEEEec-C---CcC--eeEeEEEeCCCCEEEEecCC---CCcccccceeeecccccCChhHhhhcCCCCCCceE
Q 001236 21 LKKGAQLLKYGR-K---GKP--KFYPFRLSNDETSLIWISSS---GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSF 91 (1117)
Q Consensus 21 L~~Gt~llK~~r-~---~kp--k~r~f~Ls~d~~~l~W~s~~---~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~F 91 (1117)
+++|-.|.|+-+ | ++. |.|+|+|.. ..|.|.+.. +...|+|++|+.|..=. -..+....+|
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~--~~Ls~~Ksp~~q~~~~Ipl~nI~avEkle--------e~sF~~knv~ 634 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTT--EELSYAKSPGKQPIYTIPLSNIRAVEKLE--------EKSFKMKNVF 634 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEecc--ceeEEecCCccCcccceeHHHHHHHHHhh--------hhccCCCceE
Confidence 467788888822 2 222 558888865 467784443 33468888886554211 1125667899
Q ss_pred EEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHccC
Q 001236 92 SLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQ 127 (1117)
Q Consensus 92 SIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~ 127 (1117)
.|||.+ |+|-|.|++-.|++.|+..|+.....++
T Consensus 635 qVV~~d--rtly~Q~~n~vEandWldaL~kvs~~N~ 668 (800)
T KOG2059|consen 635 QVVHTD--RTLYVQAKNCVEANDWLDALRKVSCCNQ 668 (800)
T ss_pred EEEecC--cceeEecCCchHHHHHHHHHHHHhccCc
Confidence 999987 7999999999999999999988775444
No 70
>PLN02153 epithiospecifier protein
Probab=85.90 E-value=75 Score=36.84 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.8
Q ss_pred cceeeecCCeEEEEeC
Q 001236 568 HVAVLTSRNEVYTWGK 583 (1117)
Q Consensus 568 Ht~aLT~dG~Vy~WG~ 583 (1117)
+++.+..+++||.||-
T Consensus 307 ~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 307 TTATVYGKNGLLMHGG 322 (341)
T ss_pred cccccCCcceEEEEcC
Confidence 4556667789999983
No 71
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.13 E-value=3.7 Score=46.80 Aligned_cols=60 Identities=27% Similarity=0.440 Sum_probs=44.7
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 830 KKTNELLN--QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 830 ~~~~~~l~--~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
+|+.+... +||.+|.+||-.|.++|.+.-.|-+++.+.+.+ +||.=..|+++|++|-+|-
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~--------------ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA--------------SKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 34444443 488888888888888888888887777777765 5677778888888887764
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.92 E-value=6.6 Score=40.17 Aligned_cols=61 Identities=28% Similarity=0.315 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKD 887 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake 887 (1117)
++.+..-..-|+++..++-.+|.+|.+|..+++.+|.++..+++++-..+ +|++|....-|
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l-ee~~~~~~~~E 76 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL-EESEKRKSNAE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhHH
Confidence 35566666778888899999999999999999999999999999977654 45566555444
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.83 E-value=4.5 Score=49.51 Aligned_cols=45 Identities=36% Similarity=0.476 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
.+|.+.|..|.+|+.+|+.+|..|+..++....+..+++++.++.
T Consensus 153 eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 153 EELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888999999999999988888888777777766665543
No 74
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=84.73 E-value=6.2 Score=42.83 Aligned_cols=61 Identities=21% Similarity=0.355 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVE-------SLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 837 ~~ev~~l~~qv~-------~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
|+|+.+|+.|.+ .+.++-+.++.++++.+.+++||..--..=+ -++.+++++.|...|+++
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~--~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKT--EKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 455555555433 4555556666666666666666554333321 255666666666666654
No 75
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.68 E-value=3.2 Score=44.35 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
+|+..+++.+++.|+++.+..+.++..++++++++ ...++|+..+.+..+-++.|..+++.+.+.|
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el 126 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKEL 126 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777777777777777776 4466666555555555555555444444433
No 76
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=84.35 E-value=7.4 Score=37.88 Aligned_cols=37 Identities=14% Similarity=0.382 Sum_probs=30.8
Q ss_pred ceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 89 LSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 89 ~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.+|.+........+.|-|.|..+.+.|++|+++||..
T Consensus 69 ~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 69 ERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred eEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 4555555556788999999999999999999999953
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.28 E-value=10 Score=37.60 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
+++.|...=.-|--|+..||.|+..|..+-+....||-++.++.++. ++++.-+..|..+|++|-.|.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-----------~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-----------RALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 44555544445556777777777777777777777777666666663 444444666666666665553
No 78
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=84.00 E-value=3.1 Score=38.50 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKA 884 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ka 884 (1117)
+|.+|.+||..|..|-++.+.+++..+..++. |.|||++...
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~a----Ak~EA~RAN~ 66 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYA----AKSEANRANT 66 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 89999999999999999999999887766665 6777775443
No 79
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.67 E-value=0.18 Score=63.82 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=88.6
Q ss_pred CCCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCC--CCCCceeccEEe-ccCCCCCeEEEEecCCeEEEEEcCCcEEE
Q 001236 282 VLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGH--GVGKDIVQPHLL-ESLTMTSVDFVTCGEFHTCAVTMAGELYT 358 (1117)
Q Consensus 282 ~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~--g~~~~~~~P~~V-~~l~~~~I~~Va~G~~hs~aLT~dG~Vys 358 (1117)
..++..|.+-.+..++|...|++|.|-....--|-. ........|..- -.+.+.+|+.+++..-..-++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 445777777788889999999999998765433332 112233344322 24567889999999999999999999999
Q ss_pred EcCCCCCCCccCCCC--CcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCC
Q 001236 359 WGDGTHNAGLLGHGT--DVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419 (1117)
Q Consensus 359 WG~n~~~~GqLG~g~--~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~ 419 (1117)
|=+- .|.+- ...+..-+++. ..++.+++..|-..|+++..++.-||.||---+
T Consensus 453 WlDE------cgagV~fkLa~ea~Tkie--ed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 453 WLDE------CGAGVAFKLAHEAQTKIE--EDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred HHhh------hhhhhhhhhhhhhhhhhh--hhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 9543 22221 11112222222 456678888888899999999999999995433
No 80
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.41 E-value=4.3 Score=39.27 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=45.6
Q ss_pred ecCCcCeeEeEEEeCCCCEEEEecCCCC-cccccceeeecccccCChhHhhhcCCCCCCceEEEEEc----CCcceEEEE
Q 001236 31 GRKGKPKFYPFRLSNDETSLIWISSSGE-RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN----NGKRSLDLI 105 (1117)
Q Consensus 31 ~r~~kpk~r~f~Ls~d~~~l~W~s~~~~-~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~----~~~rtLDLv 105 (1117)
.-+++ |.|+|.|. ...|.+++.+.+ ...++.+|. ..|..- -.........|+|... ++.++.-|-
T Consensus 16 ~~K~~-KrrwF~lk--~~~L~YyK~kee~~~~p~i~ln--l~gcev-----~~dv~~~~~kf~I~l~~ps~~~~r~y~l~ 85 (106)
T cd01237 16 TLKGY-KQYWFTFR--DTSISYYKSKEDSNGAPIGQLN--LKGCEV-----TPDVNVAQQKFHIKLLIPTAEGMNEVWLR 85 (106)
T ss_pred hhhhh-eeEEEEEe--CCEEEEEccchhcCCCCeEEEe--cCceEE-----cccccccccceEEEEecCCccCCeEEEEE
Confidence 33554 66778776 456766554432 112222221 011111 0111122445777664 345899999
Q ss_pred eCCHHHHHHHHHHHHH
Q 001236 106 CKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 106 a~~~~ea~~Wv~GL~~ 121 (1117)
|.++++++.|+.+++.
T Consensus 86 cdsEeqya~Wmaa~rl 101 (106)
T cd01237 86 CDNEKQYAKWMAACRL 101 (106)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999863
No 81
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.36 E-value=10 Score=38.77 Aligned_cols=73 Identities=32% Similarity=0.390 Sum_probs=45.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQ-----------------VESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDV 888 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~q-----------------v~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ 888 (1117)
+.+|.+-|..|-.||.+|+.+ +++|.++.++++.+|..+.+++++|..-.++=..|.--.-.=
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455666666666666666554 457888888888888888888888876555433333333333
Q ss_pred HHHHHHHHHH
Q 001236 889 IKSLTAQLKD 898 (1117)
Q Consensus 889 ik~lt~qlk~ 898 (1117)
+++|-.+...
T Consensus 117 v~~le~~~~~ 126 (143)
T PF12718_consen 117 VKALEQERDQ 126 (143)
T ss_pred HHHHHhhHHH
Confidence 4455444333
No 82
>PRK15396 murein lipoprotein; Provisional
Probab=83.27 E-value=3.6 Score=37.66 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKA 882 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ 882 (1117)
.+|.+|.+||..|..|-++...+++..+..++. |.|||++.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----a~~eA~ra 65 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----AKDDAARA 65 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 388899999999999999999998888777776 77888754
No 83
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.54 E-value=35 Score=39.35 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
.-..+.+||.+|++..++|++.
T Consensus 219 lR~r~eeeme~~~aeq~slkRt 240 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRT 240 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445555555555555544
No 84
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.29 E-value=6.5 Score=38.68 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=57.3
Q ss_pred HhcCCeEEEEec---CCcCeeEeEEEeCCCCEEEEecCCCC----------ccccccee--eecccccCChhHhhhcCCC
Q 001236 21 LKKGAQLLKYGR---KGKPKFYPFRLSNDETSLIWISSSGE----------RSLKLASV--SKIIPGQRTAVFQRYLRPE 85 (1117)
Q Consensus 21 L~~Gt~llK~~r---~~kpk~r~f~Ls~d~~~l~W~s~~~~----------~~l~l~~I--~eI~~G~~t~~f~r~~~~~ 85 (1117)
|.+|+.++=..+ +.|++.|.+.|=++..-+.=....+. ..|.+++| .|. ..
T Consensus 6 l~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~--------------v~ 71 (114)
T cd01232 6 LLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEH--------------VE 71 (114)
T ss_pred EEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEc--------------cC
Confidence 455665555544 35888898889876443321110000 12223222 010 13
Q ss_pred CCCceEEEEEcCCc---ceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 86 KDYLSFSLIYNNGK---RSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 86 ~~~~~FSIiy~~~~---rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
.+.+.|.|.+.++. .+.-|.|++.++-+.|+.-|+.|+.
T Consensus 72 gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 72 GDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 35789999998875 6788999999999999999998874
No 85
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=82.26 E-value=0.87 Score=60.32 Aligned_cols=48 Identities=31% Similarity=0.771 Sum_probs=37.5
Q ss_pred cccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhh
Q 001236 636 LQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKV 696 (1117)
Q Consensus 636 s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~ 696 (1117)
..|..|. .-..++|||+.||.+||..|. +.+.+..|||..|+.+....
T Consensus 6 ~~~~~~~---t~~~~~~~~~~~g~~~~~~~~----------~~~~~~i~~~~~~~~~~~~~ 53 (1598)
T KOG0230|consen 6 NVCYDCD---TSVNRRHHCRVCGRVFCSKCQ----------DSPETSIRVCNECRGQWEQG 53 (1598)
T ss_pred cchhccc---cccccCCCCcccCceeccccC----------CCCccceeehhhhhhhcccc
Confidence 3566676 566689999999999999996 23335889999999987553
No 86
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=81.82 E-value=0.96 Score=44.63 Aligned_cols=51 Identities=24% Similarity=0.716 Sum_probs=38.6
Q ss_pred hhccccccccccccc-ccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhh
Q 001236 634 EQLQCSACRQAFGFT-RKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKL 693 (1117)
Q Consensus 634 d~s~Cs~C~~~F~f~-rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l 693 (1117)
+...|..|+.+|+|. ...+.|..|...+|..|+.. ....+.-+|..|+..-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---------TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---------CCCCCCEEChhhHHHH
Confidence 456899999999966 45789999999999999753 2335667999998754
No 87
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.59 E-value=6 Score=34.93 Aligned_cols=41 Identities=29% Similarity=0.277 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
+++||..|..|.||++.++.+.+.|.++-++...|-.--+.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888887777766655444333
No 88
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.48 E-value=7.5 Score=37.46 Aligned_cols=78 Identities=28% Similarity=0.333 Sum_probs=37.9
Q ss_pred hhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTN--ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV---AAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 825 ~~~~~~~~~--~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~---a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
+...+++-+ ..+.+|+..|-.|.+.|..+.+.+..+.-...+++.++..- +.+--++.+.-|+-|+.|..+++++
T Consensus 14 v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 14 VRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444442 34455555555555555555555555544555554444431 2223333455555566666655555
Q ss_pred Hhc
Q 001236 900 AER 902 (1117)
Q Consensus 900 ~~~ 902 (1117)
.++
T Consensus 94 e~~ 96 (108)
T PF02403_consen 94 EEE 96 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 89
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=79.96 E-value=14 Score=32.65 Aligned_cols=60 Identities=22% Similarity=0.183 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
+..|-.+|+.|=+.|++...|=..+..++.....-=+-=.+|..+|..=|+++..+||.|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555566666666655555555555444322222222234445555577777777766
No 90
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.80 E-value=13 Score=35.90 Aligned_cols=69 Identities=28% Similarity=0.345 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKK---AQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~---~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
|-++..+|+.+++.|+.+......+|....++ +++...-+++=..+-++..+-++.+..+|.++.-.||
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP 105 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46888999999999999999999999988874 6777777777777888888999999999999999988
No 91
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.29 E-value=3.4 Score=33.82 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCE 855 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~ 855 (1117)
--|.|+.-|+.|.+|+.+|++||..|+.+.+
T Consensus 13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 13 SYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3478888889999999999999998887753
No 92
>PHA01750 hypothetical protein
Probab=77.43 E-value=6.2 Score=34.39 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
.|+.++|+..|+-|++.++.|-+..++++...++|++
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4677899999999999999998888888888888875
No 93
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=76.20 E-value=8.6 Score=52.14 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=43.3
Q ss_pred CCCEEEEEecCcEE-EEEecCCeEEEEeCCCCCCCCCC--CCCCCcceeeecccCCCCeEEEEeCCCcceeeecCC
Q 001236 504 DYNFHKVACGHSLT-VGLTTSGHVFTMGSTVYGQLGNP--NADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRN 576 (1117)
Q Consensus 504 ~~~I~~Ia~G~~ht-laLT~dG~Vy~wGsN~~GQLG~~--~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG 576 (1117)
.-.|+.|++-..|. +|||.+|+||..=.-.+-+.-.+ ......|..++ .+.+|..+....+|.+.++-++
T Consensus 743 ~G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP---~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 743 SGEIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALP---DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CcchhheeeccccceeEecCCCceeecCHHHhhCcccCCccccCceeccCC---CCCchhhhhcCCCCceEEEecC
Confidence 34799999998864 58999999996532221111111 11122222222 4678999999999998887554
No 94
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.08 E-value=20 Score=40.57 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=31.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
....++...+.|.+++.+++.+++.++++.+.+..+|+...+.++
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777777777777777777777777776665554
No 95
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=76.08 E-value=1.1e+02 Score=34.49 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=16.5
Q ss_pred CCeEEEEEcCCcEEEEcCCCCCCCcc
Q 001236 344 EFHTCAVTMAGELYTWGDGTHNAGLL 369 (1117)
Q Consensus 344 ~~hs~aLT~dG~VysWG~n~~~~GqL 369 (1117)
..|+++.- ++++|+||--....|.+
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaC 104 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGAC 104 (392)
T ss_pred cCceEEEE-cceEEEEcCccCccccc
Confidence 46776664 78899999653334444
No 96
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.82 E-value=30 Score=35.42 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001236 842 KLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDV 888 (1117)
Q Consensus 842 ~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ 888 (1117)
+|..+++.|+.+.+..+.++...+.+...+-.-...+..+.|..||-
T Consensus 70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333333333333333333333333333
No 97
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=75.62 E-value=10 Score=45.55 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=42.2
Q ss_pred chhhhhhHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNE-L--LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA----AEESSKAKAAKDVIKSLTAQ 895 (1117)
Q Consensus 823 ~~~~~~~~~~~~-~--l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a----~~e~~~~kaake~ik~lt~q 895 (1117)
..+.+.+++-+- . +..+|..|-.+-+.|..+.+.+..|.-+..|++.+...-. .+=-++.|..|+-|+.|..+
T Consensus 12 ~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 91 (418)
T TIGR00414 12 DLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAA 91 (418)
T ss_pred HHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555541 1 2455655555555555555555555555555555422111 11112345566667777666
Q ss_pred HHHHHhcCCC
Q 001236 896 LKDMAERLPP 905 (1117)
Q Consensus 896 lk~~~~~~~~ 905 (1117)
++++.+++-.
T Consensus 92 ~~~~~~~~~~ 101 (418)
T TIGR00414 92 LKALEAELQD 101 (418)
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 98
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.57 E-value=13 Score=31.79 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAK 883 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~k 883 (1117)
.|.+|-++|..|..|-.++..++.-++..++ .|.+||++.+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~----~ak~EAaRAN 44 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ----AAKEEAARAN 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3455555666666666666666665554443 4777777543
No 99
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=75.19 E-value=24 Score=33.44 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.6
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1117)
...+|.|... ..+.+=|.|++.++++.|+..|+.
T Consensus 70 ~~~~F~l~~~-~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 70 KKHVFRLRLP-DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CceEEEEEec-CCCEEEEECCCHHHHHHHHHHHhc
Confidence 3578999865 458899999999999999999874
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.08 E-value=6.8 Score=41.02 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
-|..|+.+|++|+..|+.++..++.||..+.+.+-.. ...+-|..|..++++|.+||=
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~------------el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNE------------ELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888888777766321 122235555555555555554
No 101
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.03 E-value=15 Score=35.29 Aligned_cols=67 Identities=27% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKA-QEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~-~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
++..-+++...+.+..+..+.||+.++..| +||-.|+++|---+-+++.=...|..||++...+|-.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677778888888999999888887 9999999887755555555556677777776655543
No 102
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=74.97 E-value=9.7 Score=45.94 Aligned_cols=82 Identities=23% Similarity=0.275 Sum_probs=42.7
Q ss_pred chhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNE-LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA---AEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 823 ~~~~~~~~~~~~-~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a---~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
..+.+++++-+- ....+|..|-.|-+.|..+.+.+..|..+..|++..+..-. .+--++.|+.|+-|+.|.+++++
T Consensus 12 ~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 12 EAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555541 22456666666666666666666666666666665422111 11122345556666666666655
Q ss_pred HHhcCC
Q 001236 899 MAERLP 904 (1117)
Q Consensus 899 ~~~~~~ 904 (1117)
+.+++-
T Consensus 92 ~~~~~~ 97 (425)
T PRK05431 92 LEAELE 97 (425)
T ss_pred HHHHHH
Confidence 555443
No 103
>PRK14161 heat shock protein GrpE; Provisional
Probab=74.82 E-value=19 Score=38.21 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=49.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.+.+-+.+.-+.+.+|+..|++|++.|+.+.....+|++.++|+.+.-..-+.+ .+..+.+++++-.+.+
T Consensus 12 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~-~a~~~~~~~LLpv~Dn 81 (178)
T PRK14161 12 TINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKD-YAIATFAKELLNVSDN 81 (178)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 345566666677788999999999999999999999999888777765544443 2334556666655554
No 104
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.67 E-value=27 Score=31.58 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
.+=.|..+|..||..|+.+...|.+.-+.+..|.++++ ....+.++=|++|-.+|+++
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~--------------~e~~~~~~rl~~LL~kl~~v 72 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLK--------------QERNAWQERLRSLLGKLEEV 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhcC
Confidence 34455667777777777777777766666666666665 22556677788887777653
No 105
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=74.58 E-value=9.2 Score=46.61 Aligned_cols=92 Identities=22% Similarity=0.335 Sum_probs=57.9
Q ss_pred CCeEEEEecCCcCeeEeEEEeCCCCEEEEe-cC----CCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 24 GAQLLKYGRKGKPKFYPFRLSNDETSLIWI-SS----SGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 24 Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~-s~----~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
...+.|+....+-+.|+|.+..+...+... .+ ...+.+.+.+|.+| ++++..+ ......||.|-..++
T Consensus 380 ~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v-----~pv~~~~--~~~~~~~~~i~~~~~ 452 (478)
T PTZ00267 380 GGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDV-----FPVPEVY--SQKHPNQLVLWFNNG 452 (478)
T ss_pred ceEEeccCCCcchhhheEEecCCceEEEeccccccCCCCCccccHHHhccc-----ccccHHh--cCCCCceEEEEecCC
Confidence 345677766555688889887655544331 11 12344556666554 2221111 123477899977665
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+.+-++|.+++|++.|+..|+..+
T Consensus 453 -~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 453 -QKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred -cEEEEecCChHHHHHHHHHHHHHh
Confidence 467788999999999999998654
No 106
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=74.18 E-value=20 Score=35.37 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=56.1
Q ss_pred hcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCCC---------cccccceeeeccccc--CChhHhhhcCCCCCCce
Q 001236 22 KKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGE---------RSLKLASVSKIIPGQ--RTAVFQRYLRPEKDYLS 90 (1117)
Q Consensus 22 ~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~~---------~~l~l~~I~eI~~G~--~t~~f~r~~~~~~~~~~ 90 (1117)
..|..=+|---+++|+.|+..|= |...|........ ..+.|.++ .|.... +++. ....-..+
T Consensus 6 ~DGelk~k~~~~~k~k~RyiFLF-Dk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~-~I~~~~~~d~~~-----~~~~~~~~ 78 (116)
T cd01223 6 LDGEVRIKASEDQKTKLRYIFLF-DKAVIVCKALGDNTGDMQYTYKDIHDLADY-KIENNPSRDTEG-----RDTRWKYG 78 (116)
T ss_pred cCCceEEeEeccCCCceeEEEEe-cceEEEEEecCCCCCCccEEhHHhhhhhee-eeEecCccCccc-----CCcceEEE
Confidence 34544334444578999988885 4455555433221 12222221 011111 1110 01123468
Q ss_pred EEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 91 FSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 91 FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
|-|+...+...+.|.|+++|+-+.|+..|..-|+
T Consensus 79 f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~s 112 (116)
T cd01223 79 FYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMS 112 (116)
T ss_pred EEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHh
Confidence 9999988778899999999999999999876654
No 107
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=73.93 E-value=8.9 Score=44.51 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=69.4
Q ss_pred cHHHHHHHHhcCC----eEEEEecCCcCeeEeEEEeCCCCEEEEecCCCC-------------cccccc-eeeecccccC
Q 001236 13 DIEQALIALKKGA----QLLKYGRKGKPKFYPFRLSNDETSLIWISSSGE-------------RSLKLA-SVSKIIPGQR 74 (1117)
Q Consensus 13 ~~~~~l~~L~~Gt----~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~~-------------~~l~l~-~I~eI~~G~~ 74 (1117)
..||++++||+-- .=+||.|--.|+++.= .--..|-|...... +.+... |.+ +++=+=
T Consensus 147 tHdeAVqaLKraGkeV~levKy~REvtPy~kk~---sivs~vgWe~~~p~sp~~~~~~dsp~~~~~~~~~d~k-~IpLKm 222 (506)
T KOG3551|consen 147 THDEAVQALKRAGKEVLLEVKYMREVTPYFKKE---SIVSEVGWEDPAPQSPSLGGSEDSPSPKHINFRKDRK-TIPLKM 222 (506)
T ss_pred chHHHHHHHHhhCceeeeeeeeehhcchhhccC---ccccccCcCCCCccCcccCCCCCCCCCCccccccccc-ccchhh
Confidence 3689999998752 2357777667766543 33445778555321 111111 111 112222
Q ss_pred ChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 75 TAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 75 t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+-+-|+....++|++||-|---++..||=|=|+|.+||+.|+..|.+-+
T Consensus 223 ~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v 271 (506)
T KOG3551|consen 223 AYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANV 271 (506)
T ss_pred HHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHH
Confidence 3333444556889999999988899999999999999999999988655
No 108
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.32 E-value=3.3e+02 Score=37.04 Aligned_cols=217 Identities=16% Similarity=0.115 Sum_probs=111.0
Q ss_pred EEEEcCCcEEEEeCCCCCccCCCCCC--ceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCC
Q 001236 296 ALVTRQGEVFTWGEESGGRLGHGVGK--DIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGT 373 (1117)
Q Consensus 296 ~~LT~dG~VyswG~N~~GQLG~g~~~--~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~ 373 (1117)
+=+|-|.++|.|-.++.+++---++. .+..-.+|..-++.-+-.| .|.++|.+-=+|+..|-.. .....+...
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~-~~~~~~~~~ 167 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSF-DEFTGELSI 167 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEe-ccccCcccc
Confidence 45788999999999887766432221 1111122222222222222 5889999999999988542 112222221
Q ss_pred CcceeeeeeecCCCCCCcEEEEEecCCeeEEEc-cCCcEEEE----eCCCCCCcCC-CCC----CCcccceeecc--ccc
Q 001236 374 DVSHWIPKRISGPLEGLQVASVTCGPWHTALIT-STGQLFTF----GDGTFGVLGH-GDR----KNVSYPREVES--LSG 441 (1117)
Q Consensus 374 ~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt-~dG~Vy~w----G~N~~GQLG~-g~~----~~~~~P~~V~~--l~~ 441 (1117)
.... +..+.+|..|..|.+-.+-=++++ .+|.||-. +++-|+.-.+ -.. -....|..+.. ...
T Consensus 168 f~~~-----~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 168 FNTS-----FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccc-----eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 1111 222344666766665554444444 56655433 4455555111 110 11223442222 224
Q ss_pred ceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCC---------cccceeecccCCCCEEEEEe
Q 001236 442 LRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP---------RLKPTCVPALIDYNFHKVAC 512 (1117)
Q Consensus 442 ~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~---------~~~P~~V~~l~~~~I~~Ia~ 512 (1117)
..|.+|+.+....+..+- +..|.|-+|--+..|+-+.-.... ...-..+....-..|++|+.
T Consensus 243 dpI~qi~ID~SR~IlY~l---------sek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~ 313 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVL---------SEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISP 313 (1311)
T ss_pred CcceeeEeccccceeeee---------ccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecc
Confidence 579999999888887754 668887777655555443211100 00000111111124555542
Q ss_pred ------cCcEEEEEecCC-eEEEEeC
Q 001236 513 ------GHSLTVGLTTSG-HVFTMGS 531 (1117)
Q Consensus 513 ------G~~htlaLT~dG-~Vy~wGs 531 (1117)
-.-|.+|+|..| ++|.-|+
T Consensus 314 l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 314 LSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cCcccccceeEEEEecCCeEEEEecc
Confidence 356889999998 5666554
No 109
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.48 E-value=36 Score=43.86 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=60.4
Q ss_pred hhhhhHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQE-VLK-------LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQL 896 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~e-v~~-------l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ql 896 (1117)
...-|.++-++|.+| +.+ ++..|+.|+.+.++|-.+|+.++.+.++.-..|..=++|.+.|+|-=+.|..++
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666677666 322 223567899999999999999999988887777777789999999999999988
Q ss_pred HHHHhcC
Q 001236 897 KDMAERL 903 (1117)
Q Consensus 897 k~~~~~~ 903 (1117)
+.|..++
T Consensus 617 ~~vl~~l 623 (717)
T PF10168_consen 617 DRVLQLL 623 (717)
T ss_pred HHHHHHH
Confidence 8776655
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=72.18 E-value=10 Score=34.11 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAA 876 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~ 876 (1117)
-+++|+..|++|++.|+++-+.++.++++++.--+.--.+|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 457788888888888888888888777777443333333343
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.54 E-value=41 Score=37.53 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
-|.+|+.+|..|++.|+.+.++++..+...++++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el 86 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQEL 86 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444454444444444444444333333
No 112
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.31 E-value=23 Score=37.97 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+++..|..+.+.|+.+......+++..+++.+|
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444
No 113
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.98 E-value=44 Score=34.24 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
.|+.++.+|++++..|+...+....++..+++++. ---++.++++.-++.+...+|.
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~-------~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELA-------SAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333 2233444555555555554443
No 114
>PRK11637 AmiB activator; Provisional
Probab=70.70 E-value=27 Score=42.16 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+|+..++.++..+.++.+..+.+|..+.+++.+
T Consensus 60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~ 93 (428)
T PRK11637 60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE 93 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 115
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=70.70 E-value=10 Score=36.28 Aligned_cols=37 Identities=27% Similarity=0.501 Sum_probs=32.3
Q ss_pred CCceEEEEEcC-CcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNN-GKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 87 ~~~~FSIiy~~-~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+.++|.|+-.+ ...++.|-|++.++-+.|+..|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 36999998874 34699999999999999999999887
No 116
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.05 E-value=55 Score=32.26 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
....+.+.++=..|+..-..|......-+.=|+....+...|...|.+|......-..-|+-|+++|..|-..
T Consensus 24 ~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~ 96 (126)
T PF13863_consen 24 ERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555666666666666677777888899999999998888888899999988776543
No 117
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=69.71 E-value=32 Score=41.58 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhcC
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS-KAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~-~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
..|+.+|.+|-+.|+++-+.+....+...++++.|+.-++.|.. .....|+-+-.|..+|.+|.++|
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555556677777766555544 22333444444444444444443
No 118
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.30 E-value=38 Score=39.26 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC--
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE-------AMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP-- 905 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e-------~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~-- 905 (1117)
-|.+|...|.++++.|+++++.++.||..+++++++ .|..-.+=.-.--...+-..+|.+|+.-+.++|=.
T Consensus 54 ~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 54 KLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666555544443 22221111111112334445666665555544432
Q ss_pred --CCCCCCCCCCcccCCCCccCCccccCCCCccccc
Q 001236 906 --GVYDPENMRPAYIPNGLETNGVHYSDMNGERHSR 939 (1117)
Q Consensus 906 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1117)
.++ .+.+. +.+..++.-+||.+--|
T Consensus 134 ktNv~-n~~F~--------I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 134 KTNVY-NDTFH--------IWHDGPFGTINGLRLGR 160 (314)
T ss_dssp T--TT-TTT----------EEEETTEEEETTEEE--
T ss_pred hcCch-hceee--------EeecCCeeeECCeeecc
Confidence 111 22222 23334566677776655
No 119
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.16 E-value=59 Score=29.17 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA---VAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~---~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
|-.||..||..+..|.+|.+..+.++..+.+.=+.|+. .|-+|..|-|+- +.+|..+|++.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E---~e~L~~el~~~ 66 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEE---NEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 67899999999999999999999988888877666544 445555554443 44555566553
No 120
>PRK14160 heat shock protein GrpE; Provisional
Probab=68.95 E-value=35 Score=37.24 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
...+++.++-|.+++.+|++++..|+.+.....++++-++|+++.-...+..-+ ..+.++++|-.|.+
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a-~e~~~~~LLpVlDn 123 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA-CEDVLKELLPVLDN 123 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 455677777788888889999999988888888888877777766555444322 34555555544443
No 121
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=68.82 E-value=15 Score=34.92 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=51.4
Q ss_pred HhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEec-----CCC-Cc-----ccccceeeecccccCChhHhhhcCCCCCCc
Q 001236 21 LKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWIS-----SSG-ER-----SLKLASVSKIIPGQRTAVFQRYLRPEKDYL 89 (1117)
Q Consensus 21 L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s-----~~~-~~-----~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~ 89 (1117)
|.+-..|+|+. +|+||.|.|.|=.|- |.+.+ ..+ .+ .|+|.+|.=... .|+
T Consensus 3 Lv~eg~lvel~-~~~rK~R~~FLFnDl--Lvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----~~~---------- 64 (96)
T cd01228 3 LVKDSFLVELV-EGSRKLRHLFLFTDV--LLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----PFR---------- 64 (96)
T ss_pred ccccceeeeeh-hCCCcceEEEeeccE--EEEEEeeeccCccccccceeEEEEhHHheecch-----hhh----------
Confidence 45567889998 557899999998883 23311 112 22 366666522111 122
Q ss_pred eEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 90 SFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 90 ~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+- +...||.-+.|.+..|...|+..|+.|.
T Consensus 65 ---~~-~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 65 ---IH-NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred ---cc-ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 11 2246788889999999999999987663
No 122
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.28 E-value=21 Score=44.90 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=39.9
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 819 LSFSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 819 ~~~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
++.-+..++.+.+.-|+..-|+.+|+++++.+.++...+-.|-|++.-|++
T Consensus 467 ~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlk 517 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLK 517 (1118)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345677899999999999999999999999888887776666665555444
No 123
>PRK11637 AmiB activator; Provisional
Probab=68.24 E-value=34 Score=41.34 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001236 846 QVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~ 865 (1117)
++..++++....+.+|..+.
T Consensus 62 ~i~~~~~~~~~~~~~l~~l~ 81 (428)
T PRK11637 62 SVRQQQQQRASLLAQLKKQE 81 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=66.63 E-value=3.1e+02 Score=33.59 Aligned_cols=87 Identities=24% Similarity=0.305 Sum_probs=49.3
Q ss_pred EEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCe-EEEEEcCCcEEEEcCCCCC
Q 001236 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFH-TCAVTMAGELYTWGDGTHN 365 (1117)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~h-s~aLT~dG~VysWG~n~~~ 365 (1117)
=|.||..|.++.+..|..+.=-.. .++......|..|..+++- .+-=+.+|.+++|+.+.+
T Consensus 216 iit~Gk~H~~Fw~~~~~~l~k~~~-----------------~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~- 277 (626)
T KOG2106|consen 216 IITCGKGHLYFWTLRGGSLVKRQG-----------------IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTN- 277 (626)
T ss_pred EEEeCCceEEEEEccCCceEEEee-----------------ccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCc-
Confidence 489999999988877755543211 1111112234445444433 333456889999987632
Q ss_pred CCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEE
Q 001236 366 AGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFT 413 (1117)
Q Consensus 366 ~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~ 413 (1117)
++. +-+.+.-|.-+++++..+|.|.+
T Consensus 278 ----------------~~~------k~~~aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 278 ----------------RIS------KQVHAHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred ----------------eEE------eEeeecCCceEEEEEecCccEee
Confidence 111 11224456667777777777766
No 125
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.60 E-value=19 Score=35.27 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=52.8
Q ss_pred cCCeEEEE-ecCCcCeeEeEEEeCCCCEEEEecCCCCcc----cccceeee--cccccCChhHhhhcCCCCCCceEEEEE
Q 001236 23 KGAQLLKY-GRKGKPKFYPFRLSNDETSLIWISSSGERS----LKLASVSK--IIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 23 ~Gt~llK~-~r~~kpk~r~f~Ls~d~~~l~W~s~~~~~~----l~l~~I~e--I~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
+|-..+|- ++++| |.++|.|-..+. .+..+.+.+. ..+.+..+ |=.|.. ++. .-..+-+.||.|=.
T Consensus 3 ~g~LylK~~gkKsW-Kk~~f~LR~SGL--Yy~~Kgksk~srdL~cl~~f~~~nvY~~~~---~kK-k~kAPTd~~F~~K~ 75 (114)
T cd01259 3 EGPLYLKADGKKSW-KKYYFVLRSSGL--YYFPKEKTKNTRDLACLNLLHGHNVYTGLG---WRK-KYKSPTDYCFGFKA 75 (114)
T ss_pred cceEEEccCCCccc-eEEEEEEeCCee--EEccCCCcCCHHHHHHHHhcccCcEEEEec---hhh-ccCCCCCceEEEec
Confidence 46677786 88888 666788877654 3433333221 22222222 222322 111 11245577888844
Q ss_pred cC----CcceE-EEEeCCHHHHHHHHHHHHHHH
Q 001236 96 NN----GKRSL-DLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 96 ~~----~~rtL-DLva~~~~ea~~Wv~GL~~Li 123 (1117)
.. +.+.| -|.|.|++.++.|+++||.+-
T Consensus 76 ~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 76 VGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 32 12444 367788889999999998654
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.32 E-value=47 Score=35.82 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA----VAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~----~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
|..+|..++..++.+.+..+.+|+.+.++++-+-. ...-|-.|.++|.+-++.|..+++.+--+|
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999999999999999999886543 345677788888888888888777765544
No 127
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=66.23 E-value=26 Score=43.16 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=56.3
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
+.++|+..+--.-|..|+.+|+.|++.|+.+.+..+.++.-...++.+......+=-|+-.-+|-=||.|..+++.+
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44556655555567889999999999999999999888888888888766666655555566666666666654433
No 128
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=66.20 E-value=34 Score=36.87 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.+.+.+++..|++|++.|+.+..+..++++.++|+++.-..-|. ..+.-+-|++++-.|.+
T Consensus 38 ~~~~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~-k~a~e~~~~dlLpviDn 98 (193)
T COG0576 38 LEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK-KYAIEKFAKDLLPVIDN 98 (193)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999999999876666665444333 23334667776666654
No 129
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.18 E-value=30 Score=41.72 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKK----AQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~----~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
.|.+|-.+|+.|++.|+.+-.....+|.+.+++ +++..+-+++=.++-++.++-++.|.+++.++..+||-
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345778888888888888888888888764433 33444445555667888888999999999999999985
No 130
>PLN02678 seryl-tRNA synthetase
Probab=65.11 E-value=24 Score=42.80 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=46.2
Q ss_pred cchhhhhhHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHH
Q 001236 822 SKSITDSLKKTNE-L-LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV---AAEESSKAKAAKDVIKSLTAQL 896 (1117)
Q Consensus 822 ~~~~~~~~~~~~~-~-l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~---a~~e~~~~kaake~ik~lt~ql 896 (1117)
+..+...+++-+- . +..||.+|-.+-+.|.++.+.+..|.....|++.....- +.+-.++.+.-|+-|+.|.+++
T Consensus 15 ~~~v~~~l~~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 15 PELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666551 1 346666666666666666666666666666666442110 1122234566667777777766
Q ss_pred HHHHhcCC
Q 001236 897 KDMAERLP 904 (1117)
Q Consensus 897 k~~~~~~~ 904 (1117)
+++.++|-
T Consensus 95 ~~~~~~l~ 102 (448)
T PLN02678 95 QEAKAALD 102 (448)
T ss_pred HHHHHHHH
Confidence 66655544
No 131
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.73 E-value=22 Score=40.63 Aligned_cols=50 Identities=28% Similarity=0.318 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAA 876 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~ 876 (1117)
+.|..+-.-|.||-.+|+.|++.|.++|...++|-|.+.+++.||.+.-.
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq 179 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444557899999999999999999999999999999999987543
No 132
>PHA03098 kelch-like protein; Provisional
Probab=64.68 E-value=1.1e+02 Score=37.68 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=11.9
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|+++ .-+|+||++|-.
T Consensus 335 ~~~~~-~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVT-VFNNRIYVIGGI 351 (534)
T ss_pred cceEE-EECCEEEEEeCC
Confidence 45444 458999999864
No 133
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=64.60 E-value=25 Score=36.62 Aligned_cols=33 Identities=27% Similarity=0.598 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~ 867 (1117)
.|..++.+|.++|.+|.+.|.--|.||..+.+-
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~ 115 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA 115 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999999999866553
No 134
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=64.46 E-value=1.4e+02 Score=37.58 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=32.3
Q ss_pred EEecCCeEEEEeCCCCCCCCCCCCCCCcceeeec-ccCCCC---eEEEEeCCCcceeeecCCeEEEEeC
Q 001236 519 GLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVED-KLAGES---VEEIACGAYHVAVLTSRNEVYTWGK 583 (1117)
Q Consensus 519 aLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~-~l~~~~---V~~Is~G~~Ht~aLT~dG~Vy~WG~ 583 (1117)
+..-+|.||+.|.... +... . .|+. .+.... |..+..+..+..+..-+|++|+-|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~~---~-----~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSAL---S-----SVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCcc---c-----eEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 5556889999996542 1111 0 0111 011122 2334457777777888999999985
No 135
>PRK14143 heat shock protein GrpE; Provisional
Probab=64.17 E-value=40 Score=37.49 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.+..+-|.+|+..|+.+++.|+.+.-...++++.++|+.+.-..-+.. -+.++.++++|-.|.+
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~-~a~~~~~~~lLpV~Dn 129 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRL-QLKCNTLSEILPVVDN 129 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH
Confidence 334456778899999999999999988899999888777665554444 4456777777766654
No 136
>PRK14155 heat shock protein GrpE; Provisional
Probab=63.94 E-value=31 Score=37.59 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
+-|.+|+.+|++|++.|+.++.....|++.++|+++.-.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~ 54 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREM 54 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888886666655433
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=63.71 E-value=72 Score=33.82 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQ 852 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~ 852 (1117)
.+|+.+++..+..+..
T Consensus 94 ~~el~~l~~~~~~~~~ 109 (191)
T PF04156_consen 94 QEELDQLQERIQELES 109 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 138
>PLN02153 epithiospecifier protein
Probab=63.63 E-value=2.8e+02 Score=32.05 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=11.9
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|++++ -+++||++|-.
T Consensus 25 ~h~~~~-~~~~iyv~GG~ 41 (341)
T PLN02153 25 SHGIAV-VGDKLYSFGGE 41 (341)
T ss_pred cceEEE-ECCEEEEECCc
Confidence 455554 46899999864
No 139
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=63.44 E-value=85 Score=40.59 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=45.3
Q ss_pred EecCCeEEEEEcCCc-EEEEcCCCCCCCccCCCCCc-ceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCc--EEEEeC
Q 001236 341 TCGEFHTCAVTMAGE-LYTWGDGTHNAGLLGHGTDV-SHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQ--LFTFGD 416 (1117)
Q Consensus 341 a~G~~hs~aLT~dG~-VysWG~n~~~~GqLG~g~~~-~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~--Vy~wG~ 416 (1117)
-.++...++++.+|+ |+++|.+ |-+-.-... ....|..|.. .+..|..|+|-..|.+.-++++. +|.++.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsd----g~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSD----GDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCC----CceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 345566677777776 5666655 222211111 1134555442 47789999999999999888885 577776
Q ss_pred CCC
Q 001236 417 GTF 419 (1117)
Q Consensus 417 N~~ 419 (1117)
...
T Consensus 86 ~~~ 88 (933)
T KOG1274|consen 86 GEE 88 (933)
T ss_pred CCc
Confidence 554
No 140
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.37 E-value=58 Score=36.72 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 839 EVLKLRAQVESLRQ------RCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 839 ev~~l~~qv~~l~~------~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
+|.=||..++.+.+ +.+..+.+.+...++++.+-.-..++-++.+.+..-++-+..++.+|.+||-.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556654444333 36677788888888888877777777788888888889999999999998854
No 141
>PRK14153 heat shock protein GrpE; Provisional
Probab=63.21 E-value=29 Score=37.33 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=48.3
Q ss_pred hhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 826 TDSLKKTNE--LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 826 ~~~~~~~~~--~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.+.||.-++ -|.+|+.+|++|++.|+.+....-++++.++|+++.-..-+.+- +.-+.++++|-.+.+
T Consensus 26 ~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~-a~~~~~~~LLpv~Dn 95 (194)
T PRK14153 26 AEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKF-VLEQVLLDLLEVTDN 95 (194)
T ss_pred HHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 455665544 56789999999999999999999999998877777554444332 223666666665554
No 142
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.88 E-value=32 Score=37.45 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=32.6
Q ss_pred hhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q 001236 826 TDSLKKTNELL----------NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM---AVAAEESSKA 882 (1117)
Q Consensus 826 ~~~~~~~~~~l----------~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~---~~a~~e~~~~ 882 (1117)
.+.+++-|+++ .|||+-+|++++.|+...+.++.|...++.-+.++- +-|.|++.|.
T Consensus 71 ene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kR 140 (246)
T KOG4657|consen 71 ENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKR 140 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777754 356666666666666666666666665544444332 3444444443
No 143
>PRK14148 heat shock protein GrpE; Provisional
Probab=62.76 E-value=48 Score=35.77 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.+.++-|.+++..|+++++.|+.+....-++++.++|+++.-...+.+ -+..+.+++++-.+.+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~-~a~~~~~~~LLpV~Dn 102 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARK-FGIEKFAKELLPVIDS 102 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 344667889999999999999999999999999888877765554444 2335666766666654
No 144
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=62.69 E-value=51 Score=38.12 Aligned_cols=69 Identities=32% Similarity=0.432 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-------HHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCE-----------FQELELQKSTKKAQEAMAVAAEESSKAKAAKD-------VIKSLTAQLK 897 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~-----------~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake-------~ik~lt~qlk 897 (1117)
|.+|...|++.++.|..|++ ..++|+|.+..|++.+...+..|.+|++.-++ =+..|..+-+
T Consensus 133 ~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~ 212 (309)
T PF09728_consen 133 LREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEK 212 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555 45678889999999999999999999999999 5566665555
Q ss_pred HHHhcCC
Q 001236 898 DMAERLP 904 (1117)
Q Consensus 898 ~~~~~~~ 904 (1117)
+|-+.|-
T Consensus 213 ~Lr~QL~ 219 (309)
T PF09728_consen 213 ELREQLN 219 (309)
T ss_pred HHHHHHH
Confidence 5555554
No 145
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=62.64 E-value=4.5 Score=41.86 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=22.3
Q ss_pred cChhhHHHHHHHhHhHHHhhhcccccC
Q 001236 1069 FGEHQAETWWSENREKVYERYNVRGLD 1095 (1117)
Q Consensus 1069 f~~~~a~~ww~~n~~~~~~~~~~~~~~ 1095 (1117)
|++..==.||.+|+++|.++|+++-.+
T Consensus 51 ~Td~gKI~WW~~Nk~~l~~KY~ip~~~ 77 (157)
T PF06092_consen 51 LTDSGKINWWLKNKDMLKEKYNIPEPD 77 (157)
T ss_pred CCccchhhHHHHhHHHHHHhcCCCCCC
Confidence 346666789999999999999998644
No 146
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=62.63 E-value=76 Score=32.16 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 86 ~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
.+.+.|.|-+.++.....|-|++.+.-+.|+.-|+.|+
T Consensus 78 gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL 115 (133)
T cd01227 78 GDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVL 115 (133)
T ss_pred CCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 34689999998888899999999999999999999999
No 147
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=62.54 E-value=50 Score=32.68 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 85 EKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 85 ~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
.+-..-|.|...+ .+..=|-|+|.+|++.||..|+...
T Consensus 74 ~Kr~~VF~L~~~~-g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 74 SKKPHVFRLRTAD-WREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred cCCCcEEEEEcCC-CCEEEEECCCHHHHHHHHHHHHHHH
Confidence 3445567777644 3678899999999999999998765
No 148
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=62.47 E-value=2.7e+02 Score=31.35 Aligned_cols=156 Identities=12% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCeEEEE--ecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC--CeeEEEccCCc
Q 001236 335 TSVDFVT--CGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP--WHTALITSTGQ 410 (1117)
Q Consensus 335 ~~I~~Va--~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~--~HtlaLt~dG~ 410 (1117)
.+|..|. |-..-.+-=.+||.+-+|-.- + +........ ...|-.|.--. .|.+.-+.+|.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR--~---~~~qR~~~~-----------~spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLR--S---LSCQRNYQH-----------NSPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEecc--C---cccchhccC-----------CCCcceEEecCCcceEEeecCCCc
Confidence 4555554 333334444678888889543 1 211111111 11233333333 35555688999
Q ss_pred EEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCC
Q 001236 411 LFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK 490 (1117)
Q Consensus 411 Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~ 490 (1117)
|+.|-.... .......|.. +..|.+++....-+... +.++.|.+|+|-.-. ...
T Consensus 148 irvWDl~~~------~c~~~liPe~-----~~~i~sl~v~~dgsml~---------a~nnkG~cyvW~l~~------~~~ 201 (311)
T KOG0315|consen 148 IRVWDLGEN------SCTHELIPED-----DTSIQSLTVMPDGSMLA---------AANNKGNCYVWRLLN------HQT 201 (311)
T ss_pred EEEEEccCC------ccccccCCCC-----CcceeeEEEcCCCcEEE---------EecCCccEEEEEccC------CCc
Confidence 999974332 1112222322 23577777777776665 236799999997532 122
Q ss_pred CCcccceeecccCCCCEEEE--EecCcEEEEEecCCeEEEEeCC
Q 001236 491 EPRLKPTCVPALIDYNFHKV--ACGHSLTVGLTTSGHVFTMGST 532 (1117)
Q Consensus 491 ~~~~~P~~V~~l~~~~I~~I--a~G~~htlaLT~dG~Vy~wGsN 532 (1117)
...+.|..--..-...|.+. +-+..|.+.-..|-.|+.|-..
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 22333332111111122222 2233444445556677777654
No 149
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.34 E-value=62 Score=39.52 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
..++++.-+....|+.+|++.-..|..+.++..++|++++|.+..+ --.-.+-|-+|..-..|++|+.++--|
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~-------q~eL~~Lk~~ieqaq~~~~El~~~n~p 153 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK-------QLELSALKGEIEQAQRQLEELRETNNP 153 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-------HHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 4566666666777777777766666666666666666666665542 222345667788888899999998777
Q ss_pred CC
Q 001236 906 GV 907 (1117)
Q Consensus 906 ~~ 907 (1117)
..
T Consensus 154 kl 155 (907)
T KOG2264|consen 154 KL 155 (907)
T ss_pred ce
Confidence 65
No 150
>PRK14154 heat shock protein GrpE; Provisional
Probab=62.12 E-value=40 Score=36.69 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
|.+|+..|++|++.|+.+.....++++.++|+++.-..-+.+ .+..+.+++++-.+.+
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~-~a~e~~~~~LLpVlDn 114 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIK-FGSKQLITDLLPVADS 114 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 456777778888888888877778887666666554443333 2223555555554443
No 151
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.09 E-value=55 Score=38.83 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=59.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhhHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES--------------SKAKAAKDVIKS 891 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~--------------~~~kaake~ik~ 891 (1117)
++.+...-..|-+|+..||+.+..|+-.|+.++.+.||+..+++-+-.--.+|- ...+|..|+|.-
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345555566777899999999999999999999999999888886655444442 345788889988
Q ss_pred HHHHHHHHHhcC
Q 001236 892 LTAQLKDMAERL 903 (1117)
Q Consensus 892 lt~qlk~~~~~~ 903 (1117)
|-.+|.-+-.+.
T Consensus 379 lrkelehlr~~k 390 (502)
T KOG0982|consen 379 LRKELEHLRRRK 390 (502)
T ss_pred HHHHHHHHHHHH
Confidence 888776655443
No 152
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=62.08 E-value=53 Score=32.11 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=55.3
Q ss_pred EEEEec-CCcCeeEeEEEeCCCCEEEEecC-CC------Cccccc--ceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 27 LLKYGR-KGKPKFYPFRLSNDETSLIWISS-SG------ERSLKL--ASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 27 llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~-~~------~~~l~l--~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
|.+++. +||.+.|+|.|=+. ..|.+.+. .+ +..+.+ -.|..+..|..-. ....-..+|-|+-.
T Consensus 8 l~~~s~~~g~~q~R~~FLFD~-~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~------~~~~~knafkl~~~ 80 (109)
T cd01224 8 ATRQKQNKGWNSSRVLFLFDH-QMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFS------SGHTIKNSLKIYSE 80 (109)
T ss_pred EEEEecccCCcccEEEEEecc-eEEEEecccccCCcEEEEEEEEcccEEEEECCCCcccc------CCceeEEEEEEEEc
Confidence 445544 58899999998653 33434321 11 122333 4445555553321 11223568889888
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHH
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~ 120 (1117)
.+.+.+.|.|+++|+-..|+..|.
T Consensus 81 ~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 81 STDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred CCCeEEEEEECCHHHHHHHHHHHH
Confidence 888999999999999999998874
No 153
>PF15406 PH_6: Pleckstrin homology domain
Probab=62.06 E-value=18 Score=35.07 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=47.4
Q ss_pred eEEEeCCCCEEEEecCC-----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHHHH
Q 001236 40 PFRLSNDETSLIWISSS-----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEV 114 (1117)
Q Consensus 40 ~f~Ls~d~~~l~W~s~~-----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~ 114 (1117)
.=+-+..++-|..+++. +...|.|.|+.+|...-..+ |++-.++ +..-+-|.+.+|++.
T Consensus 41 ~AwAsqTGKGLLF~~K~~dka~P~GiinLadase~~~~g~~k--------------F~f~~~G--~khtF~A~s~aERD~ 104 (112)
T PF15406_consen 41 AAWASQTGKGLLFFSKAEDKASPSGIINLADASEPEKDGSNK--------------FHFKIKG--HKHTFEAASAAERDN 104 (112)
T ss_pred hhhhhccCceEEEEeccccccCCcceEehhhccccccCCCce--------------EEEEeCC--ceeeeecCCHHHhcc
Confidence 33456777777775542 34458999999887754442 6666654 567789999999999
Q ss_pred HHHHHHH
Q 001236 115 WIAGLKA 121 (1117)
Q Consensus 115 Wv~GL~~ 121 (1117)
||..|++
T Consensus 105 Wv~~lk~ 111 (112)
T PF15406_consen 105 WVAQLKA 111 (112)
T ss_pred HHHHhhc
Confidence 9999863
No 154
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.93 E-value=28 Score=31.87 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
+++||..|..|.+|+..++++-+.|.++-++...|.+-
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~ 64 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666555555554443
No 155
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.52 E-value=29 Score=38.08 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=24.8
Q ss_pred CCCeEEEEecCCeEEEEEcCCcEEEEcCC
Q 001236 334 MTSVDFVTCGEFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 334 ~~~I~~Va~G~~hs~aLT~dG~VysWG~n 362 (1117)
+..+..+.|-..+.++||.+|.+|+|--.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 35788899999999999999999999543
No 156
>PHA03098 kelch-like protein; Provisional
Probab=60.76 E-value=3.4e+02 Score=33.46 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.2
Q ss_pred EEEcCCcEEEEcCC
Q 001236 349 AVTMAGELYTWGDG 362 (1117)
Q Consensus 349 aLT~dG~VysWG~n 362 (1117)
++.-++.||+.|..
T Consensus 290 ~~~~~~~lyv~GG~ 303 (534)
T PHA03098 290 SVVLNNVIYFIGGM 303 (534)
T ss_pred EEEECCEEEEECCC
Confidence 44467899999854
No 157
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.68 E-value=50 Score=39.09 Aligned_cols=70 Identities=31% Similarity=0.382 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH---HHHHHHHHHHhhhh---------
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQ-----------------ELELQKSTKKAQ---EAMAVAAEESSKAK--------- 883 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~-----------------~~~~~~~~~~~~---e~~~~a~~e~~~~k--------- 883 (1117)
|+.+.+|+.+||.+++.-+.+.|.. |.|.|-+.+|-+ .-+..|+|+++|-|
T Consensus 304 ~e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gt 383 (575)
T KOG4403|consen 304 NETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGT 383 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchhee
Confidence 4455578999998887666655543 455554444333 33566778777765
Q ss_pred -----------------hHHHHHHHHHHHHHHHHhc
Q 001236 884 -----------------AAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 884 -----------------aake~ik~lt~qlk~~~~~ 902 (1117)
+||--+..+|+-|+|--+|
T Consensus 384 l~vahgsslDdVD~kIleak~al~evtt~lrErl~R 419 (575)
T KOG4403|consen 384 LHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHR 419 (575)
T ss_pred eeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666667666654443
No 158
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.54 E-value=54 Score=31.25 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQE---------LELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~---------~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
-.+.+..|+.+|+.+++.|.....+.. .||+.+.++++.|+..++. .|-+.-.+-|+.|..+.+.
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~--rK~~~l~~~i~~l~~ke~~ 86 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS--RKDQLLMEQIEELKKKERE 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 345668899999999999988766554 6899999999999988886 5556666666666654443
No 159
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.18 E-value=61 Score=40.09 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKS 864 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~ 864 (1117)
...|++.++-|..+|.+|+++++..+++|+.+..+.+..
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666555444433
No 160
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.05 E-value=35 Score=43.97 Aligned_cols=75 Identities=28% Similarity=0.297 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 827 DSLKKTNELLNQEVLKLRAQVES-LRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~-l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
|.--+++.-|.+||.+||.|++. -..|...++..+|++.|=++| |..-=| +|.++..++-+.+.+||..|-.-+-
T Consensus 360 dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~e-i~~twE--Ekl~ktE~in~erq~~L~~~gis~~ 435 (1714)
T KOG0241|consen 360 DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKE-ITVTWE--EKLRKTEEINQERQAQLESMGISLE 435 (1714)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH-HHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666778899999998887 445555566666666665555 222223 4788889999999999998876543
No 161
>PRK14156 heat shock protein GrpE; Provisional
Probab=59.78 E-value=41 Score=35.71 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
|.+|+..|++|++.|+.+.....++++.++|+++.-...+.. -+..+.++++|-.+.+
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~-~a~~~~~~~LLpVlDn 89 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQR-YRSQDLAKAILPSLDN 89 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 457788899999999999999999999888777765554444 2334666666666654
No 162
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.76 E-value=36 Score=37.27 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeee----cccCCCCeEEEEeCCCcc-eeeecCCeE
Q 001236 504 DYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVE----DKLAGESVEEIACGAYHV-AVLTSRNEV 578 (1117)
Q Consensus 504 ~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~----~~l~~~~V~~Is~G~~Ht-~aLT~dG~V 578 (1117)
+.++..+.|-..+.++||.+|.+|+|--...-.+-.+ ....|..-. .......|+.+....... ++..++|+.
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~ 89 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDS 89 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCE
Confidence 4578889999999999999999999975432111111 011111110 002345676666665544 444467888
Q ss_pred EEEeC
Q 001236 579 YTWGK 583 (1117)
Q Consensus 579 y~WG~ 583 (1117)
|+|=.
T Consensus 90 y~y~~ 94 (219)
T PF07569_consen 90 YSYSP 94 (219)
T ss_pred EEecc
Confidence 88754
No 163
>PF10422 LRS4: Monopolin complex subunit LRS4; InterPro: IPR018479 Monopolin is a protein complex, originally identified in Saccharomyces cerevisiae (Baker's yeast), that is required for the segregation of homologous centromeres to opposite poles of a dividing cell during meiosis I []. The orthologous complex in Schizosaccharomyces pombe (Fission yeast) is not required for meiosis I chromosome segregation, but is proposed to play a similar physiological role in clamping microtubule binding sites []. In S. cerevisiae this subunit is called LRS4, and in S. pombe it is known as Mde4 [].; PDB: 3N7N_E.
Probab=59.65 E-value=3 Score=45.74 Aligned_cols=63 Identities=30% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk 897 (1117)
.+..|..|...||.||..|..+++.+-.|.+++ ++++++-. |.-| +|-.++|-.|..|...|+
T Consensus 52 ~~~~~~~E~l~LQrQi~qLt~~lQ~~~~enekl-k~~~K~~k-alle-Skl~~~kk~IdrlK~~l~ 114 (249)
T PF10422_consen 52 QSSKLVDETLLLQRQITQLTSQLQSQKQENEKL-KELQKTQK-ALLE-SKLSNKKKEIDRLKLKLE 114 (249)
T ss_dssp ------------------------------------------------------------------
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHH-HHHH-HHHHHHHHHHHHHHHHhh
Confidence 345677888888888888888888888777766 33333211 1112 467777777776664443
No 164
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.64 E-value=31 Score=41.94 Aligned_cols=70 Identities=26% Similarity=0.334 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKA------QEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~------~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
|.+++.+|+.|++.++++.+..+..|+++++.- .+.......=..+.+..++.++.|.++|++|.+.|-.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555554411 1111111111222344555566667666666665543
No 165
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=59.20 E-value=9 Score=49.72 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=62.1
Q ss_pred CCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCC---CCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEE
Q 001236 505 YNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNAD---GKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTW 581 (1117)
Q Consensus 505 ~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~---~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~W 581 (1117)
.+|+.|.+-++..+||..+|++|.|-+.+.--|-++... ..-|......+.+++|+.+++..-..-++|.+|+|.+|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 478888888899999999999999999877666654321 12344444456789999999999999999999999999
Q ss_pred e
Q 001236 582 G 582 (1117)
Q Consensus 582 G 582 (1117)
=
T Consensus 454 l 454 (3015)
T KOG0943|consen 454 L 454 (3015)
T ss_pred H
Confidence 3
No 166
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.55 E-value=1.1e+02 Score=29.81 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=40.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
....++.|...+-|..|-..|++.+.+|.++-..+...+-.+++++.||..
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888888888888888888888887643
No 167
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.49 E-value=77 Score=34.36 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
.++++..+-...+|..+..+...|++-++..+.|+++++++++. -..+-..-+.+|.-++.++.+|+++
T Consensus 37 ~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~----y~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 37 AEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN----YEKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555556666666666666666666666654 1122223344555566666655544
No 168
>PRK14139 heat shock protein GrpE; Provisional
Probab=58.35 E-value=58 Score=34.87 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
+-|.+++..|++|+..|+.++-....|++.++|+++.-..-+...+ ..+.++++|-.+.
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a-~~~~~~~LLpv~D 93 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFA-IESFAESLLPVKD 93 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHh
Confidence 3467788999999999999999999999977777766444433322 2344555554444
No 169
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.16 E-value=56 Score=35.22 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
+-|.+++..|++++..|+.+.....++++.++|+.+.-..-+...+ ..+.+++++-.+.+
T Consensus 42 ~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a-~~~~~~~LLpV~Dn 101 (194)
T PRK14162 42 EDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYE-SQSLAKDVLPAMDN 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3467888999999999999999999999988887776555554433 34666666666554
No 170
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.45 E-value=54 Score=39.62 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKK---AQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~---~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~~ 906 (1117)
|.+|..+|+.|++.|+.+......+|.+.+++ +++...-+++=.++-+..++-++.+.+++.++.-+||-=
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45777778888888888877777777653322 334444444445567888888999999999999999853
No 171
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=57.45 E-value=71 Score=34.22 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
-+.+|.-.|.-|..|+.+|+..|+...+-..++-.||..+.++++
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999999988777766666666665555554
No 172
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=56.75 E-value=78 Score=31.43 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHH----------------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRC---EFQELE----------------LQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQ 895 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~---~~~~~~----------------~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~q 895 (1117)
.|.+||+..+.|+++|..-| ++.+.+ +.+++.+++|+-.-+-+|-++-.+-+|.|++--++
T Consensus 34 ~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~ 113 (131)
T KOG1760|consen 34 DLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDE 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665433 333333 55788888888888888888888899999988888
Q ss_pred HHHH
Q 001236 896 LKDM 899 (1117)
Q Consensus 896 lk~~ 899 (1117)
||.|
T Consensus 114 LK~~ 117 (131)
T KOG1760|consen 114 LKKV 117 (131)
T ss_pred HHHH
Confidence 8865
No 173
>PRK09039 hypothetical protein; Validated
Probab=56.71 E-value=72 Score=37.47 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~ 874 (1117)
.-+|..|++|++.|+.|+...+.+|...+++.+|+-..
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888777777777766554433
No 174
>PRK14163 heat shock protein GrpE; Provisional
Probab=56.68 E-value=84 Score=34.41 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+-|.+++..|+++++.|+.+......|.+.++|+++.
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~k 79 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVER 79 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888887777787766655554
No 175
>PRK14158 heat shock protein GrpE; Provisional
Probab=56.68 E-value=68 Score=34.62 Aligned_cols=62 Identities=8% Similarity=0.093 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
..+-|.+++..|+++++.|+.+.-....+++.++|+.+.-...+.+- +..+.++++|-.+.+
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~-a~~~~~~~lLpV~Dn 102 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKY-GNESLILEILPAVDN 102 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhH
Confidence 34567788999999999999999999999997777776655444432 234555555555443
No 176
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=56.55 E-value=63 Score=31.89 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=50.6
Q ss_pred eEEEEecCCc-CeeEeEEEeCCCCEEEEec--CCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC-----
Q 001236 26 QLLKYGRKGK-PKFYPFRLSNDETSLIWIS--SSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN----- 97 (1117)
Q Consensus 26 ~llK~~r~~k-pk~r~f~Ls~d~~~l~W~s--~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~----- 97 (1117)
.|+-|..+-+ .|++||+|+..+-++.-.. .+.-|.|+|++|..|..-... . ........||=|+-.+
T Consensus 5 WmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~---~--~~~~~~~hcFEi~T~~~vY~V 79 (117)
T cd01239 5 WMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGD---S--VLAKHPPHCFEIRTTTNVYFV 79 (117)
T ss_pred eEEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCC---c--CCCCCCCcEEEEEecCEEEEe
Confidence 5666755433 3566777765554443322 234678999999999852222 1 1124567899886632
Q ss_pred -Ccc------------eEEEEeCCHHHHHHHHHHHH
Q 001236 98 -GKR------------SLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 98 -~~r------------tLDLva~~~~ea~~Wv~GL~ 120 (1117)
... ..+--....+.|..|.+.|+
T Consensus 80 G~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~ 115 (117)
T cd01239 80 GGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIR 115 (117)
T ss_pred cccccccCCCcccCCCCcccccchhHHHHHHHHHHh
Confidence 110 11111124567888998886
No 177
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.51 E-value=64 Score=40.02 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=13.5
Q ss_pred CeEEEEeCCCcc-eeeecCCeEEEE
Q 001236 558 SVEEIACGAYHV-AVLTSRNEVYTW 581 (1117)
Q Consensus 558 ~V~~Is~G~~Ht-~aLT~dG~Vy~W 581 (1117)
-|+.|.-|-... ++|+-+|+|.--
T Consensus 245 lIVGIDPGiTtgiAvldldGevl~~ 269 (652)
T COG2433 245 LIVGIDPGITTGIAVLDLDGEVLDL 269 (652)
T ss_pred eEEEeCCCceeeEEEEecCCcEEee
Confidence 356666665554 345567766543
No 178
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.48 E-value=96 Score=34.55 Aligned_cols=70 Identities=24% Similarity=0.332 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPGV 907 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~~~ 907 (1117)
.|..|+..|...++.|+.+.+....++.+..+.+-|+-....+|. +.+.+....+-.|--++.++|||..
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~---~~i~e~~~~~~~~~~~L~~~l~~el 176 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV---AEIREEGQELSSKREELKEKLDPEL 176 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 334444444444444444444444444444444444333333333 2344556677778888999999976
No 179
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=56.45 E-value=98 Score=29.04 Aligned_cols=63 Identities=22% Similarity=0.383 Sum_probs=43.1
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001236 822 SKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQ 895 (1117)
Q Consensus 822 ~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~q 895 (1117)
++.+.+.|..++.+|.+||.+-..-++.|.+..+.. +++..+.+. =...-+.++.+|+.|..+
T Consensus 3 s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L----~~~~~e~~~-------~~~~l~~s~~ll~~l~r~ 65 (92)
T PF03908_consen 3 SSDVTESLRRTRQMMAQEVERSELTLQTLEESSATL----RSTNDEYDG-------QSSLLKKSRKLLKKLERR 65 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999988888887765443 333333332 122345566777777654
No 180
>PLN02320 seryl-tRNA synthetase
Probab=56.27 E-value=55 Score=40.27 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=42.9
Q ss_pred cchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 822 SKSITDSLKKTNE-LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV--AAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 822 ~~~~~~~~~~~~~-~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~--a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
++.+.+.+++-+- +-.+||..|-.+.+.|..+.+.+..|..+..|++.+...- +.+=-++.|..|+-|+.|..++++
T Consensus 76 ~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~ 155 (502)
T PLN02320 76 KEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVK 155 (502)
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666551 1146666666666666666666666666666666541110 011112345556666666665555
Q ss_pred HHhcC
Q 001236 899 MAERL 903 (1117)
Q Consensus 899 ~~~~~ 903 (1117)
+.++|
T Consensus 156 ~~~~l 160 (502)
T PLN02320 156 LTDEL 160 (502)
T ss_pred HHHHH
Confidence 54433
No 181
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=56.14 E-value=3.4e+02 Score=30.56 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=60.4
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCC
Q 001236 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTH 364 (1117)
Q Consensus 285 I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~ 364 (1117)
.+...|-++..+-=.+||.+-.|---. +.. +.........+-+-+---..+.+.-+.+|.|++|-...+
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~---~~~--------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRS---LSC--------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccC---ccc--------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 334445555555566788888885332 111 112222211222233345566677788999999966532
Q ss_pred CCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCee--EEEccCCcEEEEeC
Q 001236 365 NAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHT--ALITSTGQLFTFGD 416 (1117)
Q Consensus 365 ~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~Ht--laLt~dG~Vy~wG~ 416 (1117)
. .....+ |..+..|.+++....-+ +++++.|.+|+|-.
T Consensus 157 ~--------c~~~li------Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 157 S--------CTHELI------PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred c--------cccccC------CCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 1 111112 23345688888777654 56689999999974
No 182
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.83 E-value=73 Score=33.79 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~ 900 (1117)
.+.+|+.++..+.++......++...++...+.-..-++..+|-++.++.++.+..++.++-
T Consensus 89 ~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 89 QLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443344444455555555555555544444
No 183
>PRK02119 hypothetical protein; Provisional
Probab=55.59 E-value=48 Score=30.05 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+|+..+.+.+..|+.|.-.||.-|+.+.+-+-+
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~ 34 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIE 34 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888777776655544
No 184
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=55.53 E-value=53 Score=43.68 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCC
Q 001236 859 LELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 859 ~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~~ 906 (1117)
.+.-.++++++|+...+.+|.+|.+-++.-++.|..+|+++.++.--.
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344447789999999999999999999999999999999886665443
No 185
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.17 E-value=92 Score=35.15 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
.+.++...+.+.++|.++|.+++.++++.+.+...+.......+
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~ 115 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVE 115 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777777777777766664333333
No 186
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.15 E-value=35 Score=36.37 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+..+++|+-|..|+.+|..+++.|..+.+..+.+.++-.+.+..
T Consensus 91 Eq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~ 134 (182)
T PF15035_consen 91 EQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQ 134 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777778888888888888888888887777766666553
No 187
>PRK14141 heat shock protein GrpE; Provisional
Probab=55.15 E-value=55 Score=35.67 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
|.+++..|++|++.|+.+....-.|++.++|+++.-...+.+- +..+.+++++-.+.
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~-a~~~~~~dLLpViD 92 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY-GIAGFARDMLSVSD 92 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHh
Confidence 4455666666666666666666666665555554433333321 22344444444443
No 188
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.40 E-value=35 Score=33.04 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
-|.+|+..+++++..|+++-+.+..||++++.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566666666666666666666666666554
No 189
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=54.34 E-value=53 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
-|..+|+.|.++|..|.+.-.....+++..+.++..
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666655544443
No 190
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.12 E-value=67 Score=38.97 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=45.4
Q ss_pred hhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNE---LLNQEVLKLRAQVESLRQRCEFQELELQK----STKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1117)
Q Consensus 825 ~~~~~~~~~~---~l~~ev~~l~~qv~~l~~~~~~~~~~~~~----~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk 897 (1117)
++..+|.+.+ -|..|-++|++|.+.|+++-...+..|+. .++++++-..-..+| ....+..|..|+.||+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~---~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSE---RQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 3444444443 33456777777777777776666666652 233333333333333 3357788999999999
Q ss_pred HHHhc
Q 001236 898 DMAER 902 (1117)
Q Consensus 898 ~~~~~ 902 (1117)
.+..+
T Consensus 141 ~~~~~ 145 (472)
T TIGR03752 141 GVLTG 145 (472)
T ss_pred hcccc
Confidence 88764
No 191
>PHA02713 hypothetical protein; Provisional
Probab=53.82 E-value=1.2e+02 Score=37.97 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=13.7
Q ss_pred cCCeEEEEEcCCcEEEEcCC
Q 001236 343 GEFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 343 G~~hs~aLT~dG~VysWG~n 362 (1117)
...+..+..-+|+||++|..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 34444455568999999964
No 192
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=53.79 E-value=1.2e+02 Score=30.64 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhcCCCCC
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKAQ----EAMAVAAEESSKAKA-AKDVIKSLTAQLKDMAERLPPGV 907 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~~----e~~~~a~~e~~~~ka-ake~ik~lt~qlk~~~~~~~~~~ 907 (1117)
..|++|+..|..+|++++.+.+|.-++++ ....-+..--++-|+ =.|-++-|..||+.+ +.||.|.
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv-~~L~lgs 93 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV-QKLELGS 93 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHS-TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCC
Confidence 56888999999999999999998888776 444443332222222 235566777788776 6799886
No 193
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=53.58 E-value=68 Score=30.90 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 842 KLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 842 ~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
.+..||..|.+.-+.|.++|..++.+++ |--+-|+++-..|..|..||
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k--------------~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK--------------AQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 4455788888888888888887777776 44455777778888888876
No 194
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.10 E-value=74 Score=40.66 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+++.++++++..+.++.+....+|+++++++++
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666666665555543
No 195
>PRK10869 recombination and repair protein; Provisional
Probab=53.10 E-value=48 Score=41.47 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001236 881 KAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 881 ~~kaake~ik~lt~qlk~~~ 900 (1117)
+.+||+++-+.++.+|++|.
T Consensus 368 R~~aA~~l~~~v~~~L~~L~ 387 (553)
T PRK10869 368 RQRYAKELAQLITESMHELS 387 (553)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 45789999999999999975
No 196
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=53.05 E-value=56 Score=30.66 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
.+|+.+|++|.+.|+.+-...+.|+...+-+-+ -||..++-....||..|-
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqk------nee~~~~~sr~~V~d~L~ 79 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKVRQK------NEENTRRLSRDSVIDQLQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHhhccCCHHHHHHHHH
Confidence 345566666666666666666666653332222 145555666666776653
No 197
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.93 E-value=38 Score=33.82 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
++|.+-|..|.|||.+|+.++..+.++
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 198
>PRK14151 heat shock protein GrpE; Provisional
Probab=52.77 E-value=70 Score=33.97 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
-|.+++..|+++++.|+.+.-....|++.++|+.+.-...+.+- +..+.+++++-.+.+
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~-a~~~~~~~LLpv~Dn 82 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKF-ALEKFAGDLLPVVDS 82 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 45567788888888888888888888887776666544433332 223555555555443
No 199
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=52.53 E-value=33 Score=33.86 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
++=|-...+.|..++..|+++++.+.++++....++++.+.++
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555554444444433
No 200
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.50 E-value=60 Score=41.91 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h---hhHHHHHHHHHHHHHHHHhcCC
Q 001236 842 KLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK--A---KAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 842 ~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~--~---kaake~ik~lt~qlk~~~~~~~ 904 (1117)
.|++..+.|.+|++.....-+.+.+++++-+.++.. ..+ . |+-|+-++.+..||+.|+.+|-
T Consensus 590 ~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~-~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS-QLPVLSEAEREFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555666666666666666666666555532 111 1 2222224444446666655443
No 201
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=52.24 E-value=1.5e+02 Score=30.33 Aligned_cols=67 Identities=30% Similarity=0.408 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhh---hHHHHHHHHHHHHHHHHh
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA--------MAVAAEESSKAK---AAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~--------~~~a~~e~~~~k---aake~ik~lt~qlk~~~~ 901 (1117)
.|.++..+|+.++.+|+..-+..+.++|+.+.++.|= -.|-..|..|.+ .+|--+..|..||+++.|
T Consensus 63 ~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L~E 140 (140)
T PF10473_consen 63 ELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKELNE 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3344444555566666666666666666666666541 122233333322 233445566777777654
No 202
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=52.21 E-value=8.9 Score=44.10 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=43.6
Q ss_pred ecCCCcceeEEeeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCC-CCCCeecChhhHhhh
Q 001236 615 ACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPN-PGKPYRVCDCCFAKL 693 (1117)
Q Consensus 615 acG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~-~~kp~RVC~~C~~~l 693 (1117)
.||+...+.+...+-..+.-.-.|.-|+..|.| .|..|.+||. ..+.....+... ..-.+-+|+.|..-+
T Consensus 192 vCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~-------~~~l~y~~~~~~~~~~r~e~C~~C~~Yl 262 (309)
T PRK03564 192 VCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV--VRVKCSNCEQ-------SGKLHYWSLDSEQAAVKAESCGDCGTYL 262 (309)
T ss_pred CCCCcchhheeeccCCCCceEEEcCCCCCcccc--cCccCCCCCC-------CCceeeeeecCCCcceEeeecccccccc
Confidence 577776555432111234445678999876666 4788999985 122222222211 223457999999988
Q ss_pred hhhcc
Q 001236 694 NKVSE 698 (1117)
Q Consensus 694 ~~~~~ 698 (1117)
+.+..
T Consensus 263 K~~~~ 267 (309)
T PRK03564 263 KILYQ 267 (309)
T ss_pred eeccc
Confidence 77633
No 203
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.78 E-value=56 Score=40.60 Aligned_cols=48 Identities=33% Similarity=0.359 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001236 851 RQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~ 900 (1117)
...++.++.+++++.+++.++..--. ..++++|+++-+.++++||+++
T Consensus 341 ~~~~~~Le~~~~~l~~~~~~~A~~Ls--~~R~~~A~~L~~~v~~eL~~L~ 388 (557)
T COG0497 341 EESLEALEKEVKKLKAELLEAAEALS--AIRKKAAKELEKEVTAELKALA 388 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 34555666666666666665332111 3578999999999999999975
No 204
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=51.68 E-value=1.2e+02 Score=28.51 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRC-EFQELELQKSTKKAQEAMAVAAE 877 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~-~~~~~~~~~~~~~~~e~~~~a~~ 877 (1117)
|.+|+.+|+..++.|.... +.-..++.....++++...-+++
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~ 45 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARD 45 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777877777776443 33345555666666665555544
No 205
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.64 E-value=78 Score=34.49 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
-|.+|+.+|++++.++.++..+...++|.
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45567777777666666665555555554
No 206
>PHA02713 hypothetical protein; Provisional
Probab=51.32 E-value=2e+02 Score=36.05 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=11.6
Q ss_pred eeEEEccCCcEEEEeCC
Q 001236 401 HTALITSTGQLFTFGDG 417 (1117)
Q Consensus 401 HtlaLt~dG~Vy~wG~N 417 (1117)
+..+..-+|+||++|-.
T Consensus 344 ~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred ceeEEEECCEEEEECCc
Confidence 33444557999999953
No 207
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.30 E-value=1.2e+02 Score=33.83 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
+|-..|.++++.|+.+.+.++...+++++.+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333
No 208
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=51.27 E-value=3.3e+02 Score=32.14 Aligned_cols=214 Identities=15% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCcEEEEcCCCCCCCccC-CCCCcceeeeeeecCCCCCCcEEEEEec-----CCeeEEEccCCcEEEEeCC
Q 001236 344 EFHTCAVTMAGELYTWGDGTHNAGLLG-HGTDVSHWIPKRISGPLEGLQVASVTCG-----PWHTALITSTGQLFTFGDG 417 (1117)
Q Consensus 344 ~~hs~aLT~dG~VysWG~n~~~~GqLG-~g~~~~~~~P~~V~~~l~~~~Iv~Va~G-----~~HtlaLt~dG~Vy~wG~N 417 (1117)
..+..++..+++||++| |.-+ ........................++.- ..|+++...+|+||.+|
T Consensus 75 r~~~~~v~~~~~IYV~G------G~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~G-- 146 (376)
T PRK14131 75 REQAVAAFIDGKLYVFG------GIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITG-- 146 (376)
T ss_pred cccceEEEECCEEEEEc------CCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEEC--
Q ss_pred CCCCcCCCC--------------------------------------CCCcccceeecccccceEEEEeeCCceEEEEEE
Q 001236 418 TFGVLGHGD--------------------------------------RKNVSYPREVESLSGLRTIAVACGVWHTAAVVE 459 (1117)
Q Consensus 418 ~~GQLG~g~--------------------------------------~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e 459 (1117)
|... ..-..+-..-.........-...-..|++++.
T Consensus 147 -----G~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~- 220 (376)
T PRK14131 147 -----GVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK- 220 (376)
T ss_pred -----CCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEE-
Q ss_pred eeecccccccCCceEEEecCCCCCCCCCCC------CCCcccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCC
Q 001236 460 VIVTQSSASVSSGKLFTWGDGDKNRLGHGD------KEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTV 533 (1117)
Q Consensus 460 ~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~------~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~ 533 (1117)
+++||..|-......-... .........+..+.......+.-+..+..+...+|+||++|--.
T Consensus 221 -----------~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 221 -----------GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred -----------CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC
Q ss_pred C---------CCCCCCCCCCCcceeeecccCCCCeEEEEe---CCCcceeeecCCeEEEEe
Q 001236 534 Y---------GQLGNPNADGKLPCLVEDKLAGESVEEIAC---GAYHVAVLTSRNEVYTWG 582 (1117)
Q Consensus 534 ~---------GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~---G~~Ht~aLT~dG~Vy~WG 582 (1117)
+ |++-...........-...+.......+.. ...+..++.-+|+||+.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~G 350 (376)
T PRK14131 290 FPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIG 350 (376)
T ss_pred CCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEc
No 209
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.77 E-value=1e+02 Score=35.25 Aligned_cols=69 Identities=25% Similarity=0.322 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCE-------FQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~-------~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
+|.+..-+.-|..|+..|+.+++.++.||+ ..+.+|..+++.+++++..-.+=-.+..+.+|=|..|..
T Consensus 63 id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 63 IDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 344444444555556666666666555555 344556666666666665555544556666665655554
No 210
>PRK14154 heat shock protein GrpE; Provisional
Probab=50.75 E-value=1.4e+02 Score=32.54 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK-KA-----------QEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~-~~-----------~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
+.+++..+-|.....+|+|..++++++.+....++.++.. ++ +-|+..+..+....++-.+-|+.+-.
T Consensus 62 ~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k 141 (208)
T PRK14154 62 TRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLD 141 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 5566666677778888899999999887777666664433 22 23332222233344566666777777
Q ss_pred HHHHHHhcCCC
Q 001236 895 QLKDMAERLPP 905 (1117)
Q Consensus 895 qlk~~~~~~~~ 905 (1117)
||..+-+++-.
T Consensus 142 ~l~~vL~k~GV 152 (208)
T PRK14154 142 LLHNTLAKHGV 152 (208)
T ss_pred HHHHHHHHCCC
Confidence 88888777644
No 211
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.62 E-value=1.2e+02 Score=36.83 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=34.5
Q ss_pred ceEEeecCeeEEEEEEccCCccceeEEEeehhccChhhHHHHHHHhHhHHHhhhcc
Q 001236 1036 EWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNV 1091 (1117)
Q Consensus 1036 e~~~~~epgv~~t~~~~~~g~~~~~rv~fs~~~f~~~~a~~ww~~n~~~~~~~~~~ 1091 (1117)
.-||+.--| ||. -||.+.+|=--.+|.= ..=|..||.-=..-|-+-+..
T Consensus 293 ~vie~~V~G-~V~----~dGK~GiRGrvVsk~G--~ila~A~~AG~l~GiG~~~~~ 341 (475)
T PRK13729 293 KTIDMPIKG-HVS----FRGKNGIKGEVVMRNG--KILGWAWGAGFVDGIGQGMER 341 (475)
T ss_pred cEEEEEEEE-EEc----cCCcCCCCceEEecch--HHHHHHHHHHHHHHHHHHhhh
Confidence 458887777 552 5899999887777643 666778887766666665554
No 212
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=50.56 E-value=1.6e+02 Score=31.98 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhhhHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES--------SKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~--------~~~kaake~ik~lt~qlk~ 898 (1117)
..+|..-..+.+|+..|+-+.+.|.++++..+.|-..+.+++..++.-+-..+ -|-++..+.+..-.+||.+
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667899999999999999999999999999999998887766655 3555666666666667777
Q ss_pred HHhcCC
Q 001236 899 MAERLP 904 (1117)
Q Consensus 899 ~~~~~~ 904 (1117)
+-...-
T Consensus 169 vl~~~n 174 (201)
T PF13851_consen 169 VLAAAN 174 (201)
T ss_pred HHHHcC
Confidence 665433
No 213
>PRK14140 heat shock protein GrpE; Provisional
Probab=50.53 E-value=98 Score=33.33 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
|.+++..|++++..|+.+.-..-++++.++|+.+.-..-+. +.+..+.+++++-.|.+
T Consensus 42 l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~-~~a~~~~~~~LLpvlDn 99 (191)
T PRK14140 42 EQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE-KYRAQSLASDLLPALDN 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 66788889999999999998888999988777776554433 34445666666665554
No 214
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=49.48 E-value=50 Score=37.76 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQ 852 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~ 852 (1117)
.|+.-|+.|.+|...|+.+|+.|+.
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777777777777743
No 215
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=49.40 E-value=6.2 Score=44.92 Aligned_cols=65 Identities=25% Similarity=0.469 Sum_probs=49.7
Q ss_pred ecccchhhcccccccccccccccccccccCcceeccCCCC----ccccccccCCCCCCCeecChhhHhh
Q 001236 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSS----RKALRAALAPNPGKPYRVCDCCFAK 692 (1117)
Q Consensus 628 kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs----~k~l~~~l~~~~~kp~RVC~~C~~~ 692 (1117)
.|+...+...|..|...|.|+++.|+|+.||.++|..|.. ++.+.+..-...+.....|..|+..
T Consensus 13 ~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 13 DWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 5777888889999999999999999999999999999976 2223333333344666777777776
No 216
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=49.40 E-value=2.5e+02 Score=33.76 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQEL 859 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~ 859 (1117)
.+|+..+++.+..|+.+++.+..
T Consensus 218 ~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 218 LEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 217
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.09 E-value=68 Score=27.51 Aligned_cols=39 Identities=10% Similarity=0.318 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~ 874 (1117)
|-.||.++.+.+.+++.+-+....+|++..+.+++-+.|
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888889999998888888888888888776654
No 218
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=48.98 E-value=97 Score=36.53 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=45.5
Q ss_pred CCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 001236 816 TSGLSFSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQE---LELQKSTKKAQEAMAVA 875 (1117)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~---~~~~~~~~~~~e~~~~a 875 (1117)
.+||--.|..+.+||..-+-.||-|+.||++-..|.+-.|.+- .||+.+=-+++|-...+
T Consensus 117 nSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkV 179 (558)
T PF15358_consen 117 NSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKV 179 (558)
T ss_pred cccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4677788889999999888999999999998887777666554 34555666666654433
No 219
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=48.98 E-value=77 Score=34.06 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
|-.+....++.|+.+.|.++.+||+++|++++|-.+-+- -|=-|++-+|++.
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtt---a~fqA~qKLksi~ 119 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTT---ACFQANQKLKSIK 119 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 334444456788888899999999999999997543321 2555566566554
No 220
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=48.87 E-value=80 Score=33.39 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhh-hHHHHHHHHHHHHHHHHhcCC
Q 001236 846 QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS----KAK-AAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~----~~k-aake~ik~lt~qlk~~~~~~~ 904 (1117)
+...|+.+.+.+..|++++++++++-+.-...|.. -.| ..+|..+.+..+++++-.|+-
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~ 137 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKID 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777765544333221 001 355566666666666655543
No 221
>PRK14146 heat shock protein GrpE; Provisional
Probab=48.75 E-value=83 Score=34.50 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.-|.+|+..|++++..|+.+.-...++++.++|+.+.-..-+...+ ..+.+++++-.|.+
T Consensus 57 ~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a-~e~~~~~lLpv~Dn 116 (215)
T PRK14146 57 TSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEA-VKSLVSGFLNPIDN 116 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhH
Confidence 3456778888888888888888888888877777766555444432 23555555555544
No 222
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.65 E-value=2e+02 Score=28.76 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001236 827 DSLKKTNELLNQEVLKLRAQV---ESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAK 883 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv---~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~k 883 (1117)
..|...-+.|.+||.+|-.++ +.+..+...++.+++.++++.+-+..|=+|=+++..
T Consensus 40 ~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 40 ARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 556667778888988888855 555667777888999999999999888888555443
No 223
>PRK14147 heat shock protein GrpE; Provisional
Probab=48.58 E-value=86 Score=33.18 Aligned_cols=57 Identities=16% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
|.+|+..|++|+..|+.+.....++++.++|+++.-..-+.+- +..+.+++++-.+.
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~-a~~~~~~~lLpv~D 79 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKF-ANEKLLGELLPVFD 79 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhh
Confidence 5667778888888888887777788776665555433333221 12344454444443
No 224
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.53 E-value=60 Score=37.76 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKA-AKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ka-ake~ik~lt~qlk~~~~ 901 (1117)
++.+|+.|++.|+++.+....+++++..++.+|=. .-.+|+- ...=|+.|.++++.|-.
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~----~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEAEK----IREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443222 2223331 22234556665555543
No 225
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=48.40 E-value=41 Score=29.63 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 845 AQVESLRQRCEFQELELQKSTKKAQEA-------MAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 845 ~qv~~l~~~~~~~~~~~~~~~~~~~e~-------~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
+++..|..+.+..+.+|+++.+++..- -.+...|-+|....++-|..|..+|+.|
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555555555565555421 1245567777777777777787777766
No 226
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=48.15 E-value=32 Score=35.59 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 831 ~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
...+-|.+++..|++|++.|+.+...+..+++.+.+++++-..-+... +.-+.++++|..+. .|..+.+.+
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~-~~~~~~~~ll~v~D-~l~~a~~~~ 81 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKY-ALEKFLKDLLPVLD-NLERALEAA 81 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHH-HHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHhh
Confidence 334445567777888888888888888888888877776644433332 22333444443332 454444444
No 227
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=48.14 E-value=43 Score=30.14 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
.+|+++=+.-.+|-..|++||..|.++.+....+++++.
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555567777888888888888888888887764
No 228
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=48.09 E-value=1.1e+02 Score=31.05 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQR--CEFQELELQKSTKKAQEAMAVA-AEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~--~~~~~~~~~~~~~~~~e~~~~a-~~e~~~~kaake~ik~lt 893 (1117)
-|+.|+..++..+..|.+. ++-....++++..+|+.|-... .+...+..++..+|.-+.
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~ 132 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYA 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3567788888888888866 6667777778888887776666 344444455555554443
No 229
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.07 E-value=1.2e+02 Score=33.60 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
+.+.++.++...|+.+.+......++++.+++.|+....|+-| +.|-+-+.+|..
T Consensus 45 ~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~le~ 99 (225)
T COG1842 45 QALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQSLED 99 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHH
Confidence 4445555566788888888999999999999999876655544 233333444444
No 230
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=47.75 E-value=2.4e+02 Score=26.96 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+.+++.++-+..-+.+|...+..|+.+++....+|...-.++.+
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~ 53 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRN 53 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677777777777777777776666544444443
No 231
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.71 E-value=83 Score=33.26 Aligned_cols=54 Identities=30% Similarity=0.414 Sum_probs=32.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVE--------SLRQRCEFQELELQKSTKKAQEAMAVAAEE 878 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~--------~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e 878 (1117)
+..++.+.+.-|++|+.+|++.++ ..+.....++.+|+.+..|++.-++-.+-|
T Consensus 85 L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666443 345555666677777777776655444433
No 232
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.59 E-value=1.1e+02 Score=39.88 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=7.7
Q ss_pred CeeEEEEEEccCCccce
Q 001236 1043 PGVYITLVALRDGTRDL 1059 (1117)
Q Consensus 1043 pgv~~t~~~~~~g~~~~ 1059 (1117)
-|..--.+...-|+-.|
T Consensus 731 ~g~~~v~IIHGkGtG~L 747 (782)
T PRK00409 731 AGYGEVLIIHGKGTGKL 747 (782)
T ss_pred cCCCEEEEEcCCChhHH
Confidence 34444444444454443
No 233
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.57 E-value=1.9 Score=49.87 Aligned_cols=64 Identities=27% Similarity=0.573 Sum_probs=52.0
Q ss_pred ecccchhhccccccccccccccccccccc--CcceeccCCCCccccccccCCCCCCCeecChhhHhhhhh
Q 001236 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYN--CGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1117)
Q Consensus 628 kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~--CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~ 695 (1117)
.|....+...|..|...|.--+-..+|.+ |+.+||..|+ |...+.+... .|..||.-|+.-+..
T Consensus 461 e~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~--Katvp~l~~e--~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 461 EWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCL--KATVPSLPNE--RPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHH--Hhhccccccc--chHHHHHHHHHHhhh
Confidence 67778888899999998988888889988 9999999996 4555566555 788899999886643
No 234
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=47.41 E-value=62 Score=38.96 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRA---------QVESLRQRCEF-QELELQKSTKKAQEAMAVAA--EESSKAKAAKDVIKSLTAQ 895 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~---------qv~~l~~~~~~-~~~~~~~~~~~~~e~~~~a~--~e~~~~kaake~ik~lt~q 895 (1117)
.+.+..+++.+|+..+.. -+..|+++.+. .+.||+++.+++.+.-.-.+ -|..=...++.++.-.+.+
T Consensus 314 ~~~~a~~ii~~~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~~~~~~~~~~~~~~~~~~k~lh~p~~~ 393 (417)
T TIGR01035 314 EAEKAEEIVEEETAEFKQWLRSLEVEPTIKALRSLAEIVREKELEKALKKLPGLSKDVEEVLEDLARKLINKLLHAPTVR 393 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888877655 35677888766 67888888887642111111 1223345667777777778
Q ss_pred HHHHHhc
Q 001236 896 LKDMAER 902 (1117)
Q Consensus 896 lk~~~~~ 902 (1117)
||++++.
T Consensus 394 lk~~~~~ 400 (417)
T TIGR01035 394 LKQLADK 400 (417)
T ss_pred HHHHhcC
Confidence 9988754
No 235
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.27 E-value=1.1e+02 Score=39.98 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
|+.+++++++.++++.+.+..+++
T Consensus 533 ~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 533 HLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 236
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=47.22 E-value=1.4e+02 Score=32.80 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELE-----LQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~-----~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
+.+--+.|.+|+.+|+.+++.|+++....... ++..+..++++-.- ..+.+.++||-+.++=+.|-+
T Consensus 35 V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~------a~~ea~~il~~a~~~a~~v~~ 106 (212)
T COG3599 35 VIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQA------AEAEADDILKRASAQAQRVFG 106 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555554443322 22222222221111 234567788887776555543
No 237
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=47.04 E-value=8.1 Score=51.83 Aligned_cols=34 Identities=35% Similarity=1.001 Sum_probs=29.6
Q ss_pred ccchhhcccccccccccccccccccccCcceeccCC
Q 001236 630 VSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSC 665 (1117)
Q Consensus 630 vs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~C 665 (1117)
..+...-.|..|++.|.-.|++||| ||.++|.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 3445556799999999999999999 999999999
No 238
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=46.63 E-value=71 Score=33.31 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhhhhHHHH
Q 001236 861 LQKSTKKAQEAMAVAA---EESSKAKAAKDV 888 (1117)
Q Consensus 861 ~~~~~~~~~e~~~~a~---~e~~~~kaake~ 888 (1117)
+|+....+-||=.+|. .||.||.++.|-
T Consensus 105 ~~~~~~~lleAkk~asqYQkEAeKCnsgmeT 135 (176)
T PF06364_consen 105 QRRADMALLEAKKMASQYQKEAEKCNSGMET 135 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 3344444444444444 688888877664
No 239
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=46.55 E-value=2.4e+02 Score=27.51 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=47.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES 879 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~ 879 (1117)
+...+.|.+-+|-|.--+..|++|-.++.+++.-+..+|-...+.++. ..+|+.|.
T Consensus 29 K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l 84 (107)
T PF09304_consen 29 KTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLEL 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455677888888899999999999999999999999999999988887 77777443
No 240
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=46.27 E-value=1.7e+02 Score=26.36 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
.+|.+=++.|.+..+.|..+.+..=..++--...+..|.+ |=++=++.|+.|+..|.+.+
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a---~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENA---ALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3566667888888888888888777777766666655554 56677899999999998865
No 241
>PRK14144 heat shock protein GrpE; Provisional
Probab=46.20 E-value=1e+02 Score=33.43 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
|.+++..|++++..|+.++-...++++.++|+++.-...|.+.+. -+.+++++-.+.+
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~-~~~~~~LLpV~Dn 107 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGV-EKLISALLPVVDS 107 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHhH
Confidence 557788899999999999988889998777777665555544322 3556665555544
No 242
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.15 E-value=72 Score=34.73 Aligned_cols=66 Identities=24% Similarity=0.327 Sum_probs=38.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQV---ESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv---~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
..+.....|.+|-+|+..|.+++ ..|+++-+...+.+|....-.. + ++--...|++|+.
T Consensus 49 ~~~~q~~~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~q~-------------~-----r~~~s~~le~L~~ 110 (206)
T COG3166 49 QIAEQQQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQ-------------K-----RAGWSVLLEQLAN 110 (206)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc-------------c-----cchHHHHHHHHHH
Confidence 35666778888888888877743 4444443333333333322211 1 1122337999999
Q ss_pred cCCCCCC
Q 001236 902 RLPPGVY 908 (1117)
Q Consensus 902 ~~~~~~~ 908 (1117)
.||++++
T Consensus 111 ~lP~~v~ 117 (206)
T COG3166 111 LLPESVW 117 (206)
T ss_pred hCCCceE
Confidence 9999985
No 243
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.93 E-value=1.4e+02 Score=36.54 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 846 QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
.+..|+.+-++|-++|+.+.++.+---.+|..=+.+-..|+|==.+|...+|.+-.+
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~ 645 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHS 645 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 367889999999999999998888777777777777788888888888888887654
No 244
>PRK12472 hypothetical protein; Provisional
Probab=45.87 E-value=83 Score=38.19 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=37.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
..++.|+..+.-..|...|.+.++.|++.-..-+.||....|.|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~ 250 (508)
T PRK12472 205 AADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAA 250 (508)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888888888899999999999988888888888777776654
No 245
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=45.82 E-value=1.5e+02 Score=32.59 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=57.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhhhHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK---------------KAQEAMAVAAEESSKAKAAKDVI 889 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~---------------~~~e~~~~a~~e~~~~kaake~i 889 (1117)
-.++|++-|+++..++..++.+-+..+++.+..-..|+.+++ .+++...-...|--|-++-+| |
T Consensus 44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~e-i 122 (230)
T PF03904_consen 44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNE-I 122 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-H
Confidence 457899999999998888888877777777776666666444 344555545555556666677 8
Q ss_pred HHHHHHHHHHHhcCCC
Q 001236 890 KSLTAQLKDMAERLPP 905 (1117)
Q Consensus 890 k~lt~qlk~~~~~~~~ 905 (1117)
+-+.+.++.|.+.+-.
T Consensus 123 ~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 123 KKVREENKSMLQEVKQ 138 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877554
No 246
>PLN02678 seryl-tRNA synthetase
Probab=45.79 E-value=79 Score=38.52 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTK---KAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~---~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
|.+|-.+|+.+++.|+.+......+|.+.++ ..++..+-+++=.++-++..+-++.|..+|.++.-+||-
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3567777777888888887777777764332 222333333333456677778888899999999999884
No 247
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=45.51 E-value=62 Score=34.37 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPGVY 908 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~~~~ 908 (1117)
.++|+.|..|+++.......||.+++...- =.+.|--|+|=|.-+...+..+||.+|+|.|
T Consensus 23 E~iravV~~ie~~~r~iq~~L~~vhq~~~~-------i~k~~~~are~~~~~kq~~~~LaE~~~~~qy 83 (226)
T KOG3067|consen 23 EKIRAVVDEIEEKLREIQLLLQNVHQNENL-------IPKECGLAREDLENIKQKYRMLAELPPAGQY 83 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc-------chHHHHHHHHHHHHHHHHHHHHhhcCCccce
Confidence 466777777777777777777766662210 1123555666666677788899999999983
No 248
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.35 E-value=3.5e+02 Score=35.41 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=6.0
Q ss_pred EEEeecCCCcceeE
Q 001236 611 VKYIACGSNYSAAI 624 (1117)
Q Consensus 611 V~~VacG~~hT~aL 624 (1117)
++.+-|-.+|.++|
T Consensus 55 ~qYF~Cd~ncG~FV 68 (1243)
T KOG0971|consen 55 VQYFECDENCGVFV 68 (1243)
T ss_pred eeeEecCCCcceEe
Confidence 33444444444444
No 249
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.29 E-value=1.1e+02 Score=35.61 Aligned_cols=31 Identities=35% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCC
Q 001236 876 AEESSKAKAAKDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 876 ~~e~~~~kaake~ik~lt~qlk~~~~~~~~~ 906 (1117)
.||.+..+..++-||....++.||-.-||.-
T Consensus 64 ~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkk 94 (330)
T PF07851_consen 64 AEERELIEKLEEDIKERRCQLFDMEAFLPKK 94 (330)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHhhCCCC
Confidence 3566666777777777777888888888763
No 250
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=45.08 E-value=85 Score=32.74 Aligned_cols=31 Identities=39% Similarity=0.412 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
.|..+|+.|++.|+++.+.++.|++++.+++
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 251
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.00 E-value=1.2e+02 Score=35.48 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
|+|.++. +++|..|+.++..++.+.+....+.+
T Consensus 7 L~KL~et-~~~V~~m~~~L~~~~~~L~~k~~e~e 39 (344)
T PF12777_consen 7 LDKLKET-EEQVEEMQEELEEKQPELEEKQKEAE 39 (344)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 34555555554444444444333333
No 252
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=44.93 E-value=6.3 Score=39.12 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQE 858 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~ 858 (1117)
.|..++..|..++..|+++.+.+.
T Consensus 29 ~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 29 ELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 253
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.75 E-value=1.3e+02 Score=39.28 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 001236 864 STKKAQEAMAVAAEES 879 (1117)
Q Consensus 864 ~~~~~~e~~~~a~~e~ 879 (1117)
++++-++.+.-|++|+
T Consensus 555 l~~~~~~~~~~a~~ea 570 (771)
T TIGR01069 555 LKERERNKKLELEKEA 570 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444444
No 254
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.54 E-value=79 Score=35.56 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=55.2
Q ss_pred hcCCeEEEEec---CCcCeeEeEEEeCCCCEEEEecCC--CCcccccc--eeeecccccCChhHhhhcCCC---CCCceE
Q 001236 22 KKGAQLLKYGR---KGKPKFYPFRLSNDETSLIWISSS--GERSLKLA--SVSKIIPGQRTAVFQRYLRPE---KDYLSF 91 (1117)
Q Consensus 22 ~~Gt~llK~~r---~~kpk~r~f~Ls~d~~~l~W~s~~--~~~~l~l~--~I~eI~~G~~t~~f~r~~~~~---~~~~~F 91 (1117)
.+-.+|+|.+. +.| |+|.|.|.++|..-.=+... +...|+|. +|++|..-++---|.-|.-.. .-.-|=
T Consensus 261 dREGWLlKlgg~rvktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACK 339 (395)
T KOG0930|consen 261 DREGWLLKLGGNRVKTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACK 339 (395)
T ss_pred cccceeeeecCCcccch-hheeEEeecceeeeeeeccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeec
Confidence 34468889965 234 66778898887654333333 34456664 345554333332222221100 000000
Q ss_pred EE----EEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 92 SL----IYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 92 SI----iy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
+= +..++.-.--+-|++.||.+.|+..+++.|+.
T Consensus 340 Te~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 340 TEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred ccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 00 00111223468899999999999999999954
No 255
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.49 E-value=1.2e+02 Score=37.73 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES 879 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~ 879 (1117)
|.+|+.|+..|+.+.+.+..+|+++..++.++-.-+..|.
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~ 470 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKV 470 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333
No 256
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=44.48 E-value=84 Score=30.40 Aligned_cols=45 Identities=29% Similarity=0.294 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk 897 (1117)
.+||.-||.|++.|.++-.++|+|--.++ .-+--|.++.|.+||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk----------------~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLK----------------TLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhCCHHHHHHHHHhcc
Confidence 58999999999999988877776644332 2344556666666554
No 257
>PRK14145 heat shock protein GrpE; Provisional
Probab=44.39 E-value=1.4e+02 Score=32.30 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.+-|.+++.+|++++..|+.+....-++++.++|+++.-..-+.+.+ ..+.+++++-.+.+
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a-~e~~~~~LLpV~Dn 107 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYG-KEQVILELLPVMDN 107 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHhH
Confidence 34577888889999999988888888888877766665444333322 23566666655554
No 258
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=44.13 E-value=5.1e+02 Score=29.12 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=42.6
Q ss_pred CCEEEEEecCceEEEEEcCCcEEEEeCCCCCc-cCCCCCCceeccEEeccCCCCCeEEE--EecCCeEEEEEcCCcEEEE
Q 001236 283 LDVHHIACGVRHAALVTRQGEVFTWGEESGGR-LGHGVGKDIVQPHLLESLTMTSVDFV--TCGEFHTCAVTMAGELYTW 359 (1117)
Q Consensus 283 ~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQ-LG~g~~~~~~~P~~V~~l~~~~I~~V--a~G~~hs~aLT~dG~VysW 359 (1117)
.+|-.++.-..|. +.--+|.||.|-.|..-. ++....-.+..|..+..+.-..|-.+ .-.++..++---||.+|+|
T Consensus 63 gpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 63 GPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred CCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 4566677666554 344569999999887665 55554445566666644332233222 2223333333346666666
Q ss_pred c
Q 001236 360 G 360 (1117)
Q Consensus 360 G 360 (1117)
-
T Consensus 142 d 142 (325)
T KOG0649|consen 142 D 142 (325)
T ss_pred E
Confidence 3
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=44.05 E-value=7.5e+02 Score=33.26 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=35.3
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCC
Q 001236 515 SLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 515 ~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n 584 (1117)
.+.+.|+.+|++|+ +. . +....+..+.....|-++.|....+...=-+
T Consensus 592 ~~~~GLs~~~~Ly~-n~----------------~-----~la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 592 RVLFGLSSNGRLYA-NS----------------R-----LLASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred eEEEEECCCCEEEE-CC----------------E-----EEecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 37888999999996 21 1 1235688888888898888888877776555
No 260
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.98 E-value=2.9e+02 Score=31.98 Aligned_cols=75 Identities=27% Similarity=0.340 Sum_probs=51.7
Q ss_pred chhhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001236 823 KSITDSLKKTNELLN----------QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSL 892 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~----------~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~l 892 (1117)
+.+.+.|+...+-.. -|=..|.=||..|+.+++-++..+-.++|+++|-.. | +..-|+.+..|
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~---e----lEr~K~~~d~L 152 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIR---E----LERQKRAHDSL 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHH
Confidence 445555655554332 355666669999999999999988888888875321 1 45567778888
Q ss_pred HHHHHHHHhcCC
Q 001236 893 TAQLKDMAERLP 904 (1117)
Q Consensus 893 t~qlk~~~~~~~ 904 (1117)
+.++.++.+.|-
T Consensus 153 ~~e~~~Lre~L~ 164 (302)
T PF09738_consen 153 REELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHH
Confidence 887777777664
No 261
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=43.97 E-value=2e+02 Score=29.28 Aligned_cols=50 Identities=26% Similarity=0.253 Sum_probs=26.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
...+.+...|.-|.+....++.+++.++.++..+-.+++.+..+.++-+.
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~ 83 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ 83 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776655555555555555555555555554444444443
No 262
>PRK14157 heat shock protein GrpE; Provisional
Probab=43.95 E-value=1e+02 Score=34.07 Aligned_cols=59 Identities=5% Similarity=0.030 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
+-|..|+.+|++|+..|+.+....-.|.+.++|+.+.=...+.+.+ .-+.+++++-.|.
T Consensus 80 ~~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a-~~~~~~dLLpvlD 138 (227)
T PRK14157 80 DDTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHG-IIDVLTALLPALD 138 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh
Confidence 3466788888888888888888888888877766665444444322 2344444444443
No 263
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=43.94 E-value=2.6e+02 Score=29.32 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001236 827 DSLKKTNELLNQE---VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1117)
Q Consensus 827 ~~~~~~~~~l~~e---v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~ 881 (1117)
+-+.+-.+-+.++ ..+.+.+++.+.++ .+.+|...++++++-+.-|.+|+.+
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e---~e~~L~~Ar~eA~~Ii~~A~~eAe~ 103 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKED---ALKKLEEAKEKAELIVETAKKEAYI 103 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 34444444444444 4444555555555555555555543
No 264
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=43.64 E-value=2e+02 Score=33.78 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
+...=+.+.+-+.+|++++..|+++.+.++.++.++.+++++-+
T Consensus 128 i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v 171 (342)
T PF06632_consen 128 IRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFV 171 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555778888888888888888888888888888888744
No 265
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.47 E-value=1.8e+02 Score=31.75 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHHhcCCCCC
Q 001236 833 NELLNQEVLKLRA--QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA---QLKDMAERLPPGV 907 (1117)
Q Consensus 833 ~~~l~~ev~~l~~--qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~---qlk~~~~~~~~~~ 907 (1117)
|.+..-=++.||- ....|++.++-...++|.+++.-+|-..--.|=-++-.+..|-||+|.- ||.+|-.+||-..
T Consensus 114 nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 114 NALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 4444444444543 4456666666666666666665555444444445667788888888875 8999999999765
Q ss_pred C
Q 001236 908 Y 908 (1117)
Q Consensus 908 ~ 908 (1117)
+
T Consensus 194 ~ 194 (290)
T COG4026 194 Y 194 (290)
T ss_pred H
Confidence 4
No 266
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.43 E-value=1.1e+02 Score=35.59 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 846 QVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+..|..+.+.++.|+..+++...|
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444555544444443
No 267
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.31 E-value=95 Score=33.31 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=16.1
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCE 855 (1117)
Q Consensus 821 ~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~ 855 (1117)
|++-....++..-+-|.+|+.++++++..|+.+++
T Consensus 59 Fps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 268
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=43.18 E-value=1.5e+02 Score=34.25 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 871 AMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 871 ~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
.+.-|.+|..|-++.|++++++..+.|++++|
T Consensus 133 ~~~~a~~~~~~~~~~k~~~~~vr~hi~~Ls~K 164 (304)
T PF02646_consen 133 RYIEAEDEEEREAALKEHAKSVRKHIKELSSK 164 (304)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445667778899999999999999999999
No 269
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=42.83 E-value=8.1 Score=49.75 Aligned_cols=78 Identities=33% Similarity=0.496 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Q 001236 826 TDSLKKTNELLN---QEVLKLRAQVESLRQ---RCEFQELELQKSTKKAQ--------------------EAMAVAAEES 879 (1117)
Q Consensus 826 ~~~~~~~~~~l~---~ev~~l~~qv~~l~~---~~~~~~~~~~~~~~~~~--------------------e~~~~a~~e~ 879 (1117)
++.|++.|+-|. +|+..||-++..|++ |.+..+.+|++|++|++ +....-.||.
T Consensus 276 i~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 276 IDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 880 SKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 880 ~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
.|..+.+.-|..+..|+.+|..++
T Consensus 356 ~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 356 KKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp ------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
No 270
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.79 E-value=79 Score=36.67 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
+|+...+.+++.++++.+..+..|+.
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 271
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=42.44 E-value=25 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCE 855 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~ 855 (1117)
+||.+||..|.+|++|..
T Consensus 1 ~E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLS 18 (23)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 588999999999888753
No 272
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.36 E-value=52 Score=39.95 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHhcC
Q 001236 884 AAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 884 aake~ik~lt~qlk~~~~~~ 903 (1117)
.-.+-|+.|.+|++.+..++
T Consensus 108 eLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 108 KLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHhhhcCC
Confidence 34445888888887766653
No 273
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.35 E-value=2.2e+02 Score=32.52 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
......+..|+..||.+|..+..+-...+.++..+...+++.=.--.+|.+.++.+..-|..|-.
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk 110 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRK 110 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34456778899999999888888877788888777777777766666666666666655555543
No 274
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.32 E-value=2.2e+02 Score=32.61 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 870 EAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 870 e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
+.-..+.+-+++.+.-.+-|+.+-..|+++-.
T Consensus 211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 211 ELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555544433
No 275
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=42.17 E-value=8.9e+02 Score=31.37 Aligned_cols=120 Identities=10% Similarity=0.095 Sum_probs=69.4
Q ss_pred EEEEEecCce--EEEEEcCCcEEEEeCCCCCccCCCCCC-ceeccEEeccCCCCCeEEEEecCCeEEEEE--cCCcEEEE
Q 001236 285 VHHIACGVRH--AALVTRQGEVFTWGEESGGRLGHGVGK-DIVQPHLLESLTMTSVDFVTCGEFHTCAVT--MAGELYTW 359 (1117)
Q Consensus 285 I~~Ia~G~~H--s~~LT~dG~VyswG~N~~GQLG~g~~~-~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT--~dG~VysW 359 (1117)
|++.+.|..- ++.+...|+-.++|...-|||+.=.-. ..+..++-.. -..|..++-...-.++.| +||+|-+|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 5566666443 456666799999999888888752211 1111111101 124555555555444444 68999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCC
Q 001236 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTF 419 (1117)
Q Consensus 360 G~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~ 419 (1117)
-... |.+ .........+...++++.-.+..+-..-||.|-+|-...|
T Consensus 378 n~~S---gfC----------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQS---GFC----------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccC---ceE----------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 5431 110 0111122335567777777777777788999999986654
No 276
>PRK14164 heat shock protein GrpE; Provisional
Probab=42.12 E-value=1.1e+02 Score=33.73 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
.++..|++|++.|+.++.....|.+.++|+++.-...+.+ .++.+.+|+++-.|.+
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~-~a~~~~~~~LLpVlDn 132 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIE-TAKAGVATDLLPILDD 132 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhH
Confidence 4567777777777777777777777776666654444333 2334555555554443
No 277
>smart00338 BRLZ basic region leucin zipper.
Probab=42.11 E-value=70 Score=27.91 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
-|..+|..|.++...|..+...+..|++.++.++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777777777777666554
No 278
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.84 E-value=2.2e+02 Score=27.60 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+..+..+||.|++.+.++....+.++++...-++|
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777777766655553
No 279
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.53 E-value=2.4e+02 Score=28.26 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
-|.+++..+.+++..+++..+.+....+.++++-+
T Consensus 14 ~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 14 RLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 280
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.29 E-value=1.9e+02 Score=33.23 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=50.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
.|.+++--+.+.+++.+++.+++.|.........+|..+.+.++. ..+.+-+.|.++..| .|-...+++-||+--
T Consensus 202 ~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~--l~~~~~~~~~~~~~e---e~kera~ei~EKfk~ 276 (294)
T COG1340 202 ADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA--LRAKEKAAKRREKRE---ELKERAEEIYEKFKR 276 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhC
Confidence 466666667777777777777777777777777777777766653 345555555555555 444456677777766
Q ss_pred CC
Q 001236 906 GV 907 (1117)
Q Consensus 906 ~~ 907 (1117)
|.
T Consensus 277 Ge 278 (294)
T COG1340 277 GE 278 (294)
T ss_pred CC
Confidence 64
No 281
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=41.22 E-value=1.1e+02 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 001236 875 AAEESSKAKAAKDVIKSLTAQL 896 (1117)
Q Consensus 875 a~~e~~~~kaake~ik~lt~ql 896 (1117)
..++-.||.-+||++..|..|=
T Consensus 50 isdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 50 ISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHT-TTHHHHHHHHT---
T ss_pred HHHHHHhchhhHHHHHHHhcCC
Confidence 4677888888888888888754
No 282
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.12 E-value=1.4e+02 Score=31.29 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
|.+-+|.+.|++||+.|.....+++.+++
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455555555444444444433
No 283
>PRK14161 heat shock protein GrpE; Provisional
Probab=41.09 E-value=1.4e+02 Score=31.87 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE 878 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e 878 (1117)
..+-...|++|.+.|.-++++++.|+++.+....++.|+...++..-..+..|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke 59 (178)
T PRK14161 7 ENNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKA 59 (178)
T ss_pred cccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888899999999988888887777777776666654444433
No 284
>PHA02047 phage lambda Rz1-like protein
Probab=40.88 E-value=1.6e+02 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 846 QVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
..++|+.|.|..+..+..+++++++
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~ 59 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQA 59 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 285
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=40.86 E-value=1.5e+02 Score=38.93 Aligned_cols=9 Identities=22% Similarity=0.088 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 001236 109 KVEAEVWIA 117 (1117)
Q Consensus 109 ~~ea~~Wv~ 117 (1117)
.++.+.|..
T Consensus 40 ~~~i~~~l~ 48 (782)
T PRK00409 40 FEEVEELLE 48 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 286
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=40.78 E-value=1.8e+02 Score=36.69 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=16.4
Q ss_pred EEecCcEEEEEecCCeEEEEeC
Q 001236 510 VACGHSLTVGLTTSGHVFTMGS 531 (1117)
Q Consensus 510 Ia~G~~htlaLT~dG~Vy~wGs 531 (1117)
......+.-+..-+|++|+-|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 3345666667778999999996
No 287
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=40.71 E-value=21 Score=46.03 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=56.4
Q ss_pred CCcCeeEeEEEeCCCCEEEEecCC----CCcccccceeeeccc-ccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeC
Q 001236 33 KGKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIP-GQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICK 107 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d~~~l~W~s~~----~~~~l~l~~I~eI~~-G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~ 107 (1117)
|+| |.|+|.|++|.-+|.++... .+.-|+|.+|..|-. |-++ .+...|-=+ +...|.-.|.|.
T Consensus 1648 K~W-k~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~----------vdekgffdl-ktt~rvynf~a~ 1715 (1732)
T KOG1090|consen 1648 KLW-KPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKT----------VDEKGFFDL-KTTNRVYNFCAQ 1715 (1732)
T ss_pred ccc-ccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccc----------cCccceeee-ehhhHHHHHHhc
Confidence 345 67889999999999997654 456799999988876 2222 122222211 223577889999
Q ss_pred CHHHHHHHHHHHHHHH
Q 001236 108 DKVEAEVWIAGLKALI 123 (1117)
Q Consensus 108 ~~~ea~~Wv~GL~~Li 123 (1117)
+..+|..|+..|+..+
T Consensus 1716 nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1716 NINLAQQWVECIQSCL 1731 (1732)
T ss_pred cchHHHHHHHHHHHhh
Confidence 9999999999998765
No 288
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.48 E-value=1.8e+02 Score=34.97 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLK-------LRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~-------l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+.|..-+.+.+|+.. +++....+++++.++..++.|+++++++
T Consensus 350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554 4455666777777777777777777764
No 289
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=40.37 E-value=1.3e+02 Score=31.62 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLR--QRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~--~~~~~~~~~~~~~~~~~~e~ 871 (1117)
-.=.+|+..+|+.+|+.|+...+ .+.+.+..+|+++..++..-
T Consensus 54 Y~FL~d~r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~ 98 (168)
T PF06102_consen 54 YGFLDDYREKEIKELKKQLKKTKDPEEREELKRELQRMESQLKAR 98 (168)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777899999999998876 55566667777777666553
No 290
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=40.26 E-value=1.7e+02 Score=34.73 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHh-----cCCCCCCC
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE--ESSKAKAAKDVIKSLTAQLKDMAE-----RLPPGVYD 909 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~--e~~~~kaake~ik~lt~qlk~~~~-----~~~~~~~~ 909 (1117)
.+|+..|+..|+.+.+ +....+.++|+..|+.+ ++.=.+-|.+-+..|..+|++|-. .||.+.+|
T Consensus 38 ~~e~~~L~~~v~~~~~--------~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~~~l~~~l~~~e~~l~~~ll~~~~~D 109 (359)
T PRK00591 38 SKEYAELEPIVEAYRE--------YKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPND 109 (359)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3566666665555443 44555666666666643 222334555566777777777763 47887765
Q ss_pred C
Q 001236 910 P 910 (1117)
Q Consensus 910 ~ 910 (1117)
.
T Consensus 110 ~ 110 (359)
T PRK00591 110 D 110 (359)
T ss_pred c
Confidence 3
No 291
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.26 E-value=1.3e+02 Score=27.36 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 842 KLRAQVESLRQRCEFQELELQKS 864 (1117)
Q Consensus 842 ~l~~qv~~l~~~~~~~~~~~~~~ 864 (1117)
+|.+.|..+-..+..+..|++++
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeL 30 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEEL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 292
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.78 E-value=1.8e+02 Score=31.84 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS 880 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~ 880 (1117)
.|.++.++-..|+++.+..+.++++..++++-|+.--.|+-|
T Consensus 46 ~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLA 87 (219)
T TIGR02977 46 TSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLA 87 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 444555566788999999999999999999988874444433
No 293
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.64 E-value=1.1e+02 Score=31.86 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 848 ESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 848 ~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
+.|.+|...-..|.++..+.++|...---.+|.|-|.|.++|-+|....|.
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~~lke~~~~i~~l~~~ik~ 171 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLANKLKEVTDVINSLVERIKQ 171 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777777778888888888777778888889999999999887764
No 294
>PRK10698 phage shock protein PspA; Provisional
Probab=39.47 E-value=1.8e+02 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS 880 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~ 880 (1117)
.+.++-++-+.|+++.+..+.++++..++++-|+.--.|+-|
T Consensus 46 alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLA 87 (222)
T PRK10698 46 TSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLA 87 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 334444556788899999999999999999999874444433
No 295
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.45 E-value=2.6e+02 Score=32.55 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQV-----------ESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv-----------~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+.+....+.|..|+.+|++.+ +.|+.+...++.+|+...+++.|
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666532 34455555555555555444444
No 296
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=39.45 E-value=1e+02 Score=37.83 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 001236 853 RCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPGV 907 (1117)
Q Consensus 853 ~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~~~ 907 (1117)
.|..+...|..+...+++ -|.++++..+.+++.++..|.++|=.+||++
T Consensus 80 ~~~~r~~~I~~l~~~L~~------~E~~R~~~l~~~l~~~~~~L~~ia~~~~~dv 128 (473)
T PF14643_consen 80 HSQKRKQWIKELDEDLEE------LEKERADKLKKVLRKYVEILEKIAHLLPPDV 128 (473)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccCcHHH
Confidence 555555666665555544 3677888999999999999999999999987
No 297
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=39.37 E-value=1.9e+02 Score=33.14 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 843 LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK------------AKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 843 l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~------------~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
++.|+..+..+...++.|+...+++++.+...+..|..= ++.+++.++.+.++|..+..++-+
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~ 207 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDA 207 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344666677777777777777777777777777777654 788888888888888777766443
No 298
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.35 E-value=2e+02 Score=27.97 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKS--TKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~--~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
..++.+|++.+....++....|.+++-. ++.+.+--..-+|=..+.++-.+-|+.++.|+.-|-|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776666666666666666654 44444332223333344566666677777777665554
No 299
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.34 E-value=2e+02 Score=30.80 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+..|..++..|+.+.+.++.+++.++.+.+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444443
No 300
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=39.32 E-value=1.1e+02 Score=27.77 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKA 884 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ka 884 (1117)
++-|-+|-++|..|.-|-++++.+..-....++- |.+|+++.++
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qA----Ak~eaarAn~ 67 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQA----AKDEAARANQ 67 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHhHHHHHHH
Confidence 4556666667777777766666666555444443 6677766543
No 301
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.28 E-value=2.4e+02 Score=32.74 Aligned_cols=36 Identities=31% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
-+.+|+.+|+.+.+.|.++.+..+.|-+++.+++++
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777776666666666555
No 302
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.21 E-value=2.7e+02 Score=30.79 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKA-KAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~-kaake~ik~lt~qlk~~~ 900 (1117)
++-.++.+....++.+..++..++.+|......++ .+..+.+.+... ....+-|+.|+.+||+.-
T Consensus 124 ~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk-~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 124 VLEQELERAEERAEAAESKIKELEEELKSVGNNLK-SLEASEEKASEREDEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555554 233333333332 344455677777776543
No 303
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=39.17 E-value=2.7e+02 Score=31.79 Aligned_cols=140 Identities=19% Similarity=0.146 Sum_probs=76.1
Q ss_pred CCCccc--ccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEec---CceEEEEEcCCc
Q 001236 229 HGSAPD--DCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACG---VRHAALVTRQGE 303 (1117)
Q Consensus 229 ~Gs~~~--~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G---~~Hs~~LT~dG~ 303 (1117)
.|+++. +-+.+|.||.=+.. .+.+|.=+ |+. -.+..+..| .-|.+++..||.
T Consensus 60 ~G~ap~dvapapdG~VWft~qg--~gaiGhLd---------------P~t------Gev~~ypLg~Ga~Phgiv~gpdg~ 116 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQG--TGAIGHLD---------------PAT------GEVETYPLGSGASPHGIVVGPDGS 116 (353)
T ss_pred CCCCccccccCCCCceEEecCc--cccceecC---------------CCC------CceEEEecCCCCCCceEEECCCCC
Confidence 366553 55778889976664 45555422 211 123334333 347888899999
Q ss_pred EEEEeCC-CCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeee
Q 001236 304 VFTWGEE-SGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKR 382 (1117)
Q Consensus 304 VyswG~N-~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~ 382 (1117)
.|.+-.. .-++++........-|.. .+.+-+.-.+.+++..|.||.-|.+- .+|.|-.........|..
T Consensus 117 ~Witd~~~aI~R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~~i~vfpaP 186 (353)
T COG4257 117 AWITDTGLAIGRLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARNVISVFPAP 186 (353)
T ss_pred eeEecCcceeEEecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccc-cceecCcccCceeeeccC
Confidence 8887543 223333322111111111 23344556688999999999988762 233333222211111111
Q ss_pred ecCCCCCCcEEEEEecCCeeEEEccCCcEEEE
Q 001236 383 ISGPLEGLQVASVTCGPWHTALITSTGQLFTF 414 (1117)
Q Consensus 383 V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~w 414 (1117)
--+.-.-+++|-+|.||.-
T Consensus 187 -------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 187 -------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred -------------CCCCCcceEECCCCcEEEE
Confidence 0133466889999999976
No 304
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.14 E-value=58 Score=36.10 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
.+...++-++|.+|.+++.+.+.+|++...++++|.
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~ 63 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEAT 63 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345556666888888888888888887766555544
No 305
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.88 E-value=1.9e+02 Score=32.06 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
.+...-+.+.+++..+++++..|+.+...++.+|..++.+.+...+
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a 141 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667788888888888888888888888877777665443
No 306
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=38.71 E-value=2e+02 Score=32.24 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=31.1
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHhcCCCCC
Q 001236 838 QEVLKLRA--QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQ---LKDMAERLPPGV 907 (1117)
Q Consensus 838 ~ev~~l~~--qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~q---lk~~~~~~~~~~ 907 (1117)
+|+..||+ |-.+|+.-....+.++.....++++.=.....|.....-+||++.++-.| +..|.+.+|+..
T Consensus 6 ~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~l 80 (243)
T PF07160_consen 6 KELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHL 80 (243)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34444444 33444444444444444444444444443334444555566666666654 556777888765
No 307
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=38.68 E-value=1.1e+03 Score=31.27 Aligned_cols=212 Identities=11% Similarity=-0.010 Sum_probs=99.5
Q ss_pred ecCCeEEEEEcCCcEEEEcCCCCCCCc---cCCCCCcceeeeeeecCCCCCCcEEEEEec-----CCeeEEEccCCcEEE
Q 001236 342 CGEFHTCAVTMAGELYTWGDGTHNAGL---LGHGTDVSHWIPKRISGPLEGLQVASVTCG-----PWHTALITSTGQLFT 413 (1117)
Q Consensus 342 ~G~~hs~aLT~dG~VysWG~n~~~~Gq---LG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G-----~~HtlaLt~dG~Vy~ 413 (1117)
....+.+++|..|++|..-.. .--. .+.|..... .+. ...+.+|+.+.+- ....+++|.+|.+.-
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~--~IP~~~r~~~G~~i~~----ll~-L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKR 616 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVY--QIPEASRTAKGKPIVN----LLP-LQPDERITAILSVKEFDDGLYLFFATKNGVVKK 616 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhh--hCcCCCcCCCCcCHHH----hcc-CCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEE
Confidence 355668889999999988322 1111 112221111 111 2356678777662 235788899998877
Q ss_pred EeCCCCCCcCCCCCCCccccee-ecccccceEEEEeeCC--ceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCC
Q 001236 414 FGDGTFGVLGHGDRKNVSYPRE-VESLSGLRTIAVACGV--WHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK 490 (1117)
Q Consensus 414 wG~N~~GQLG~g~~~~~~~P~~-V~~l~~~kI~~VacG~--~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~ 490 (1117)
.-.+.|-..... -.. +..-.+..++.+.... .+.+++ |++|++|.+-..+--..|....
T Consensus 617 i~l~~~~~~~r~-------G~~aiklke~D~lv~v~~~~~~d~lll~-----------Ts~Gr~~r~~v~eIp~~gr~~~ 678 (800)
T TIGR01063 617 TSLTEFSNIRSN-------GIIAIKLDDGDELISVRLTSGDDEVMLG-----------SKNGKAVRFPEEDVRPMGRAAR 678 (800)
T ss_pred EEhHHhhhhccC-------CcccccCCCCCEEEEEEEeCCCCEEEEE-----------ECCCcEEEEEhhhcCCcCCCCC
Confidence 654433211100 000 0000122344333322 233333 6789999886544333332221
Q ss_pred CCcccceeecccCCCCEEEEEec--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEE--eCC
Q 001236 491 EPRLKPTCVPALIDYNFHKVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIA--CGA 566 (1117)
Q Consensus 491 ~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is--~G~ 566 (1117)
... .+..-.+..|+.+..- ..+.+++|++|.+.-.=..++-..+.+. +--..+...-.+..++.+. -+.
T Consensus 679 Gv~----~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~---kGv~~ikl~~~~d~lv~~~~v~~~ 751 (800)
T TIGR01063 679 GVR----GIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG---KGVKSIKITDRNGQVVGAIAVDDD 751 (800)
T ss_pred Cee----cccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC---cceEEEEccCCCCeEEEEEEecCC
Confidence 111 1222234456655442 3357788888877766433332211100 0001111000112333322 234
Q ss_pred CcceeeecCCeEEEEeCCC
Q 001236 567 YHVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 567 ~Ht~aLT~dG~Vy~WG~n~ 585 (1117)
+..+++|.+|.+..+-.++
T Consensus 752 ~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 752 DELMLITSAGKLIRTSVQD 770 (800)
T ss_pred CeEEEEecCCeEEEeeHhh
Confidence 5578889999888776543
No 308
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=38.65 E-value=70 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 842 KLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 842 ~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
-||.||+.|+.|.+.+..-+-+++
T Consensus 3 aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 3 ALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444444333
No 309
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.16 E-value=1.6e+02 Score=37.58 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPGV 907 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~~~ 907 (1117)
.+|-.+.+.+++|++-|..+|..+|.|+|+++ +|++-+.+ - -|-++--|..++++|.++-.-|....
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ----~ti~~~q~--d-~ke~etelE~~~srlh~le~eLsAk~ 161 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQ----DTIQGAQD--D-KKENEIEIENLNSRLHKLEDELSAKA 161 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH--H-HHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 35566788899999999999999999887664 43332322 2 23445556677777766666666543
No 310
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=37.79 E-value=86 Score=30.52 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
..+.+|.-|-++.|++++.+|++.+.++|+.+..+|-++++.++-|
T Consensus 71 r~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~ 116 (120)
T KOG3478|consen 71 RTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPA 116 (120)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456777788899999999999999999999998888888776543
No 311
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.76 E-value=2.6e+02 Score=28.43 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
.|-+.|--+..++..+|+|+..+-..+.....+.+...++.+++..
T Consensus 45 ~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 45 ELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444445666667776666666666666666666655555543
No 312
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=37.59 E-value=3e+02 Score=30.93 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=25.7
Q ss_pred eeccEEeccCCCCCeEE-EEecCCeEEEE-EcCCcEEEEcCC
Q 001236 323 IVQPHLLESLTMTSVDF-VTCGEFHTCAV-TMAGELYTWGDG 362 (1117)
Q Consensus 323 ~~~P~~V~~l~~~~I~~-Va~G~~hs~aL-T~dG~VysWG~n 362 (1117)
...|+.+..-.+ .|+. +-|-..|+++- ++++.|-.|-.-
T Consensus 133 ~App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 133 KAPPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 345566654433 3444 56888888877 788999999544
No 313
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=37.43 E-value=1.2e+03 Score=31.49 Aligned_cols=115 Identities=13% Similarity=-0.014 Sum_probs=57.4
Q ss_pred ceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEE--ecCCeEEEEEcCCcEEEEcCCCCCCCccC
Q 001236 293 RHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVT--CGEFHTCAVTMAGELYTWGDGTHNAGLLG 370 (1117)
Q Consensus 293 ~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va--~G~~hs~aLT~dG~VysWG~n~~~~GqLG 370 (1117)
.-.++||.+|-|-..-...+..-+.+ +.-+..-.+..+..+. ....+.+++|..|++|..=.. .+-
T Consensus 517 ~v~v~lS~~GyIKr~~~~~~~~q~~g-------~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy-----~IP 584 (957)
T PRK13979 517 DVVITLSNEGFIKRIPLKSYNRSNSN-------VEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGI-----NIP 584 (957)
T ss_pred ceEEEEecCCEEEEcccccccccccc-------ccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEee-----eCC
Confidence 33567888886655433333221222 0011111223344443 345667888999999976322 221
Q ss_pred CCCCcc--eeeeeeec-CCCCCCcEEEEEecCC-----eeEEEccCCcEEEEeCCCC
Q 001236 371 HGTDVS--HWIPKRIS-GPLEGLQVASVTCGPW-----HTALITSTGQLFTFGDGTF 419 (1117)
Q Consensus 371 ~g~~~~--~~~P~~V~-~~l~~~~Iv~Va~G~~-----HtlaLt~dG~Vy~wG~N~~ 419 (1117)
.+.... ...-..+. ..+.+.+|+.+.+-.. +.+++|.+|.+.-.-...|
T Consensus 585 e~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef 641 (957)
T PRK13979 585 EFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKF 641 (957)
T ss_pred CCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhc
Confidence 111111 11111111 0113677887776532 4688899999987765444
No 314
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=37.34 E-value=2e+02 Score=30.80 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhhh
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKS----------------TKKAQEAMAVAAEESSKAKA 884 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~----------------~~~~~e~~~~a~~e~~~~ka 884 (1117)
|.......-..+-|.+|++.|...+++|.-.+..+... .-.+++|...=.||--||..
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~ 78 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEE 78 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHH
Confidence 34455556678899999999999999999999888422 35678888888888888877
No 315
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=37.28 E-value=8.1e+02 Score=29.46 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=40.4
Q ss_pred CEEEEEe-cCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEec--cCCCCCeEEEEecCCeEEEEEcCCcEEEEc
Q 001236 284 DVHHIAC-GVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLE--SLTMTSVDFVTCGEFHTCAVTMAGELYTWG 360 (1117)
Q Consensus 284 ~I~~Ia~-G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~--~l~~~~I~~Va~G~~hs~aLT~dG~VysWG 360 (1117)
+|+.+.- -..+.++|+++|.|+.+- -.|.. ....+..+. .....+|-.+..+.+-.++||.++++|.--
T Consensus 82 ~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 82 RIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CEEEEEECCCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 4555554 345778899999988873 33332 111122221 111233444466667788999999999873
No 316
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.24 E-value=18 Score=41.70 Aligned_cols=75 Identities=23% Similarity=0.457 Sum_probs=41.1
Q ss_pred ecCCCcceeEEeee-cccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCC-CCCCee--cChhhH
Q 001236 615 ACGSNYSAAICLHK-WVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPN-PGKPYR--VCDCCF 690 (1117)
Q Consensus 615 acG~~hT~aL~~~k-wvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~-~~kp~R--VC~~C~ 690 (1117)
.||+...+.+...+ -..+.-.-.|+-|+..|.+. |..|.+||.. ++.....+... ....+| +|+.|+
T Consensus 189 vCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~r~e~C~~C~ 259 (305)
T TIGR01562 189 ACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV--RVKCSHCEES-------KHLAYLSLEHDAEKAVLKAETCDSCQ 259 (305)
T ss_pred CCCChhhhhhhcccCCCCCceEEEcCCCCCccccc--CccCCCCCCC-------CceeeEeecCCCCCcceEEeeccccc
Confidence 46666554432111 01233355788888766664 6788888852 22222222211 112344 999999
Q ss_pred hhhhhhcc
Q 001236 691 AKLNKVSE 698 (1117)
Q Consensus 691 ~~l~~~~~ 698 (1117)
.-++.+..
T Consensus 260 ~YlK~~~~ 267 (305)
T TIGR01562 260 GYLKILYQ 267 (305)
T ss_pred cchhhhcc
Confidence 98887643
No 317
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=37.23 E-value=1.8e+02 Score=37.42 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHhc
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAK---AAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~k---aake~ik~lt~qlk~~~~~ 902 (1117)
.++-++.|.++|..|++....|+.++.....++|++.+.+.+-..-..++...-. +-++..|.|-+|+-||-..
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3333445555555555555555555555555555444444432222222221111 3345566666666666544
No 318
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=37.14 E-value=1.1e+02 Score=34.47 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 001236 885 AKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 885 ake~ik~lt~qlk~~~~~~ 903 (1117)
-++-.|-|+.+|++|-++.
T Consensus 214 lr~~~~~l~~el~~aK~~~ 232 (264)
T PF07246_consen 214 LRNESKWLEHELSDAKEDM 232 (264)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445667777777766654
No 319
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.90 E-value=8.2e+02 Score=29.41 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=19.2
Q ss_pred CCeEEEEeC--CCcceeeecCCeEEEEe
Q 001236 557 ESVEEIACG--AYHVAVLTSRNEVYTWG 582 (1117)
Q Consensus 557 ~~V~~Is~G--~~Ht~aLT~dG~Vy~WG 582 (1117)
..|.+|+.. +.|.++++.+|.+|+.=
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 467777665 45678889999998853
No 320
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.85 E-value=1.9e+02 Score=25.74 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 844 RAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 844 ~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
.+.+..|+.|.-.|+.-|+.+.+-+-+- .. .|..|..||+.|.+||-.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Q---q~-----------~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQ---QR-----------QIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------HHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------HHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444333221 11 155566666666666654
No 321
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=36.69 E-value=9.1e+02 Score=29.87 Aligned_cols=60 Identities=25% Similarity=0.220 Sum_probs=32.9
Q ss_pred EEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC-eeEEEccCCcEEEEeC
Q 001236 338 DFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW-HTALITSTGQLFTFGD 416 (1117)
Q Consensus 338 ~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~-HtlaLt~dG~Vy~wG~ 416 (1117)
.-|.||..|..+.+-.|..+.=-.+ +....+...|..|.-+.+ -.+--+++|.++.|+.
T Consensus 215 liit~Gk~H~~Fw~~~~~~l~k~~~--------------------~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 215 LIITCGKGHLYFWTLRGGSLVKRQG--------------------IFEKREKKFVLCVTFLENGDVITGDSGGNILIWSK 274 (626)
T ss_pred EEEEeCCceEEEEEccCCceEEEee--------------------ccccccceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence 3478888887777655544332111 111111234555555544 3344477899999986
Q ss_pred C
Q 001236 417 G 417 (1117)
Q Consensus 417 N 417 (1117)
+
T Consensus 275 ~ 275 (626)
T KOG2106|consen 275 G 275 (626)
T ss_pred C
Confidence 3
No 322
>smart00030 CLb CLUSTERIN Beta chain.
Probab=36.58 E-value=1.2e+02 Score=32.74 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001236 835 LLNQEVLKLRA---QVESLRQRC----EFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVI 889 (1117)
Q Consensus 835 ~l~~ev~~l~~---qv~~l~~~~----~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~i 889 (1117)
-+++||++.=. |++.|-+|. .....-|++++++-+||+.+|.|=-.|.+++.+|-
T Consensus 19 yvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vC 80 (206)
T smart00030 19 YINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVC 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667765544 444444443 34445678999999999999999888888888865
No 323
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=36.54 E-value=7e+02 Score=28.50 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=12.0
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|++++ -+|+||++|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455544 57999999865
No 324
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.95 E-value=2.1e+02 Score=31.11 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS 880 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~ 880 (1117)
.|.+..++...|+++.+..+.++++..++++.|+.--.|+.|
T Consensus 45 ~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA 86 (221)
T PF04012_consen 45 ALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA 86 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 333444455688888888999999999999988766555554
No 325
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=35.94 E-value=3.7e+02 Score=28.56 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEF 856 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~ 856 (1117)
++..+++.+++.+.++++.
T Consensus 72 ~~Ae~~~~eA~~~~~eye~ 90 (181)
T PRK13454 72 AAAEELKQKAVEAEKAYNK 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 326
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=35.93 E-value=2.2e+02 Score=33.36 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES 879 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~ 879 (1117)
.+|+..++-+++.-++.++..-.+|+.-+.++++.-.+|.+|.
T Consensus 21 ~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee 63 (344)
T PF12777_consen 21 QEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEE 63 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333333333333
No 327
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.82 E-value=1.8e+02 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001236 847 VESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 847 v~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
|..|+.+....+.++..+++++
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 328
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.78 E-value=1.3e+02 Score=29.75 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
..--..|..+++.|+++.+....+++++++++++
T Consensus 72 l~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~ 105 (118)
T PF13815_consen 72 LHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKK 105 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456667777777777777777766666655
No 329
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.76 E-value=1.2e+02 Score=29.19 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.....+.|...+..|.+.++.|+.+.+..+.+++++++++.|
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777777777777777766
No 330
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=35.64 E-value=1.3e+02 Score=29.88 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
.||..|...+..++.+..+...+++-..
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~ 33 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTE 33 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4777777777777777666655555333
No 331
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.52 E-value=33 Score=41.85 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+|+..|| |++.|++|.+.+++|++..++++++
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 45666666 6666666666666666655555544
No 332
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=35.47 E-value=75 Score=33.91 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 001236 889 IKSLTAQLKDMA 900 (1117)
Q Consensus 889 ik~lt~qlk~~~ 900 (1117)
++.|..|.+.+.
T Consensus 177 ~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 177 IEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHH
Confidence 455556665554
No 333
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=35.43 E-value=1.9e+02 Score=39.33 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.6
Q ss_pred EEEEEc
Q 001236 91 FSLIYN 96 (1117)
Q Consensus 91 FSIiy~ 96 (1117)
|++|+|
T Consensus 25 ~~~i~G 30 (1164)
T TIGR02169 25 FTVISG 30 (1164)
T ss_pred eEEEEC
Confidence 444443
No 334
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.42 E-value=2.1e+02 Score=30.03 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
-.+|+.++..|..+.+.++.||.++++++..++-
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~ 77 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQ 77 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666655555544433
No 335
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=35.36 E-value=64 Score=31.51 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=52.5
Q ss_pred eeEeEEEeCCCCEEEEecCCCCc---ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSGER---SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAE 113 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~~~---~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~ 113 (1117)
..|+|+|-|+. |-|+....++ =|...+|.+|..- |.. .+.+.|..|..++ .+-+=|.|.|+-++.
T Consensus 21 Q~Ry~~LfPNR--LE~~~~~~~~~~eLi~M~~i~~V~~e-----~~~----iK~~~CI~ik~k~-~~k~vlt~~d~i~l~ 88 (116)
T cd01240 21 QTRYFKLYPNR--LELYGESEANKPELITMDQIEDVSVE-----FQQ----IKEENCILLKIRD-EKKIVLTNSDEIELK 88 (116)
T ss_pred HHHHheeCcce--eeecccccccCCcEEEeehhhhcchh-----hee----eccCceEEEEEcC-CceEEEecCCcHHHH
Confidence 45788998975 4564332222 2555777766432 332 3678899999987 466899999999999
Q ss_pred HHHHHHHHHH
Q 001236 114 VWIAGLKALI 123 (1117)
Q Consensus 114 ~Wv~GL~~Li 123 (1117)
.|..-|+...
T Consensus 89 qW~~elr~a~ 98 (116)
T cd01240 89 QWKKELRDAH 98 (116)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 336
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=35.32 E-value=85 Score=38.32 Aligned_cols=92 Identities=23% Similarity=0.389 Sum_probs=51.6
Q ss_pred cCCeEEEE-ecCCcCeeEeEEEeCCCCEEEEecCCCCc---cc-ccceeeecccccCChhHh----hhcCCCCCCceEEE
Q 001236 23 KGAQLLKY-GRKGKPKFYPFRLSNDETSLIWISSSGER---SL-KLASVSKIIPGQRTAVFQ----RYLRPEKDYLSFSL 93 (1117)
Q Consensus 23 ~Gt~llK~-~r~~kpk~r~f~Ls~d~~~l~W~s~~~~~---~l-~l~~I~eI~~G~~t~~f~----r~~~~~~~~~~FSI 93 (1117)
.|-.-+|- ++|+|.|. ||.|-..+.. +..+.+.| .+ .|.++. .+.+|- |.+-..+-+.||+|
T Consensus 320 ~GfL~~K~dgkKsWKk~-yf~LR~SGLY--ys~K~tsk~~r~Lq~l~~~~------~snVYt~i~~rKkyksPTd~~f~~ 390 (622)
T KOG3751|consen 320 QGFLYLKEDGKKSWKKH-YFVLRRSGLY--YSTKGTSKEPRHLQCLADLH------SSNVYTGIGGRKKYKSPTDYGFCI 390 (622)
T ss_pred cceeeecccccccceeE-EEEEecCcce--EccCCCCCCchhhHHHHhcc------cCceEEeecchhccCCCCCceEEe
Confidence 46666777 88899555 5678776653 32222222 11 122221 111221 11223445677777
Q ss_pred EEcC---CcceEEEEe-CCHHHHHHHHHHHHHHH
Q 001236 94 IYNN---GKRSLDLIC-KDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 94 iy~~---~~rtLDLva-~~~~ea~~Wv~GL~~Li 123 (1117)
--.. ..|.|-++| .|+..+..|+++||.+-
T Consensus 391 K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 391 KPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 6532 347787555 67778999999999775
No 337
>PRK04325 hypothetical protein; Provisional
Probab=35.31 E-value=1.6e+02 Score=26.78 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 843 LRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 843 l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
+.+.+..|+.|.-.||.-|+.+.+-+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv 32 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATV 32 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444433
No 338
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=35.27 E-value=2.5e+02 Score=29.14 Aligned_cols=61 Identities=25% Similarity=0.305 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ---EAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~---e~~~~a~~e~~~~kaake~ik~lt~qlk 897 (1117)
.+|+.+++.||-.|..+-..++..+....++++ +++.-|..+...|.-++|=|.-|..+..
T Consensus 66 ~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~ 129 (152)
T PF07321_consen 66 LKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQ 129 (152)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444444444444333 3344466677777777777777777544
No 339
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.17 E-value=4.4e+02 Score=26.42 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
.|..|+..|+.+++.+..+......+|+.-.+.+++|=.-=..|--|+-++-+-|..|-.|+.+
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~ 70 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQE 70 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555444444444443
No 340
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=35.07 E-value=91 Score=31.02 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=12.9
Q ss_pred hHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELL------NQEVLKLRAQVESLRQRCE 855 (1117)
Q Consensus 829 ~~~~~~~l------~~ev~~l~~qv~~l~~~~~ 855 (1117)
+..+|++| ..|+..+++++..|.++.+
T Consensus 5 l~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~ 37 (120)
T PF09969_consen 5 LEEANALLPLLRPILEEIRELKAELEELEERLQ 37 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554 3444455555555444433
No 341
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=34.95 E-value=1e+02 Score=33.20 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
..-|.+||.|+..|.++-..++.+|++..
T Consensus 26 ~~AIl~Lk~~~~~L~krq~~Le~kIe~e~ 54 (191)
T PTZ00446 26 YKAILKNREAIDALEKKQVQVEKKIKQLE 54 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444444433
No 342
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=34.72 E-value=76 Score=39.18 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=58.5
Q ss_pred HHHHHhcCCeEEEEec-CCcCeeEeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEE
Q 001236 17 ALIALKKGAQLLKYGR-KGKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 17 ~l~~L~~Gt~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
.-..||.| +++|+.. +|.+..||+.|-.|.. .+...+........+++.+.. ..... ......+.+--+.+.
T Consensus 269 sreLiKEG-~l~Kis~k~~~~qeRylfLFNd~~--lyc~~r~~~~~~k~~~r~~~s---~~~~~-v~~~~~~~~~~tF~~ 341 (623)
T KOG4424|consen 269 SRELIKEG-QLQKISAKNGTTQERYLFLFNDIL--LYCKPRKRLPGSKYEVRARCS---ISHMQ-VQEDDNEELPHTFIL 341 (623)
T ss_pred HHHHhhcc-ceeeeeccCCCcceeEEEEehhHH--Hhhhhhhhcccceeccceeec---cCcch-hcccccccCCceEEE
Confidence 44455666 5678854 5999999999987643 222222211111122211111 11111 111222322333334
Q ss_pred cCCcceEEEEeCCHHHHHHHHHHHHHHHHccC
Q 001236 96 NNGKRSLDLICKDKVEAEVWIAGLKALISSGQ 127 (1117)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~ 127 (1117)
.+..|+|+|.|.+.+|-+.||..|+..|....
T Consensus 342 ~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~k 373 (623)
T KOG4424|consen 342 TGKKRGVELQARTEQEKKEWVQAIQDAIDKHK 373 (623)
T ss_pred ecccceEEeecCchhhHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999995443
No 343
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=34.65 E-value=2.8e+02 Score=28.49 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVA 875 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a 875 (1117)
.+.++-+.+..+|+.+.+..+.+|+-++.....+..=|
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da 47 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDA 47 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46677777888888888888888888777776655444
No 344
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.63 E-value=13 Score=42.37 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=31.2
Q ss_pred ecCCCcceeEEeeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhh
Q 001236 615 ACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1117)
Q Consensus 615 acG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~ 694 (1117)
.||+...+++...+--.|.-.-.|+-|+..|.|. |..|..||..-.. . .........+.-.+-||+.|+.-++
T Consensus 177 vCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~--R~~Cp~Cg~~~~~---~--l~~~~~e~~~~~rve~C~~C~~YlK 249 (290)
T PF04216_consen 177 VCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV--RIKCPYCGNTDHE---K--LEYFTVEGEPAYRVEVCESCGSYLK 249 (290)
T ss_dssp TT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---SS----E--EE--------SEEEEEETTTTEEEE
T ss_pred CCCCcCceEEEecCCCCccEEEEcCCCCCeeeec--CCCCcCCCCCCCc---c--eeeEecCCCCcEEEEECCcccchHH
Confidence 5666666655432111233455778887665553 5667777754221 1 0011012223345679999999887
Q ss_pred hhc
Q 001236 695 KVS 697 (1117)
Q Consensus 695 ~~~ 697 (1117)
.+.
T Consensus 250 ~vd 252 (290)
T PF04216_consen 250 TVD 252 (290)
T ss_dssp EEE
T ss_pred HHh
Confidence 764
No 345
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.62 E-value=1.2e+02 Score=26.48 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
+|..|..+...|+.+++.+..+++.
T Consensus 34 ~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 34 KVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 346
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.60 E-value=2.6e+02 Score=33.09 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 859 LELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 859 ~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
.+++.+-++..++-.--.+-..|.+.|-+-|..+|.+|.+++|+|-.
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555556667888888899999999888887753
No 347
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.45 E-value=1e+02 Score=30.15 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
.|.+||..|+.+|..|-++=..+..|.+.+.+++.+.-.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888888888877777888888777776433
No 348
>PRK04406 hypothetical protein; Provisional
Probab=34.41 E-value=1.9e+02 Score=26.34 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 843 LRAQVESLRQRCEFQELELQKSTKK 867 (1117)
Q Consensus 843 l~~qv~~l~~~~~~~~~~~~~~~~~ 867 (1117)
|.+.+..|+.|.-.|+.-|+.+.+-
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~ 33 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDA 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544433
No 349
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.34 E-value=1.2e+02 Score=33.17 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHHHHH---HHHHHHhcCCC
Q 001236 880 SKAKAAKDVIKSLTA---QLKDMAERLPP 905 (1117)
Q Consensus 880 ~~~kaake~ik~lt~---qlk~~~~~~~~ 905 (1117)
...+..++++.+|.. .||.+-..+..
T Consensus 95 e~a~~~~~vv~amk~g~kaLK~~~k~i~i 123 (211)
T PTZ00464 95 ESVKDTKVQVDAMKQAAKTLKKQFKKLNV 123 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 344556777777765 67776666643
No 350
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=34.32 E-value=1.3e+02 Score=36.39 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRA---------QVESLRQRCEF-QELELQKSTKKAQEAMAVAAE--ESSKAKAAKDVIKSLTAQ 895 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~---------qv~~l~~~~~~-~~~~~~~~~~~~~e~~~~a~~--e~~~~kaake~ik~lt~q 895 (1117)
.+.+..+++.+||.+... -+..|+++++. .+.|++|+-+++.+ -.-.++ |..=...++.++..-|.+
T Consensus 310 ~~~~a~~iI~e~~~~f~~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~l~~-~~~~~~~i~~~~~~~~~kllh~P~~~ 388 (414)
T PRK13940 310 ESSKAQKIIVKSLEEYLEKEKAIISNSAIKELFQKADGLVDLSLEKSLAKIRN-GKDAEEIIKRFAYEIKKKVLHYPVVG 388 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888876654 35788888876 67888888887631 111111 222345566666777778
Q ss_pred HHHHHh
Q 001236 896 LKDMAE 901 (1117)
Q Consensus 896 lk~~~~ 901 (1117)
||++++
T Consensus 389 lk~~~~ 394 (414)
T PRK13940 389 MKEASK 394 (414)
T ss_pred HHHhhc
Confidence 888664
No 351
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=34.17 E-value=30 Score=42.22 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=53.5
Q ss_pred eeEeEEEeCCCCEEEEecC-CC----Ccccccceeeecc-cccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHH
Q 001236 37 KFYPFRLSNDETSLIWISS-SG----ERSLKLASVSKII-PGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKV 110 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~-~~----~~~l~l~~I~eI~-~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ 110 (1117)
+-|||.|+.- .|.+.+. .+ ...|++..|+.|+ .|++- -. ..-...|-|+-.+ +||=|-|+|+.
T Consensus 755 ~TrYFTLSgA--~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr-----~~--rslpKAFEIFTAD--~T~ILKaKDeK 823 (851)
T KOG3723|consen 755 KTRYFTLSGA--QLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKR-----RD--RSLPKAFEIFTAD--KTYILKAKDEK 823 (851)
T ss_pred ccceEEecch--hhhcccCCCCCCCCCCCccHHHhhhHHHHHhhh-----hh--cccchhhheeecC--ceEEeeccccc
Confidence 5578888754 4445222 12 2458888888887 46421 11 1123456666654 78999999999
Q ss_pred HHHHHHHHHHHHHHccC
Q 001236 111 EAEVWIAGLKALISSGQ 127 (1117)
Q Consensus 111 ea~~Wv~GL~~Li~~~~ 127 (1117)
-|+.|+.-|+..|++++
T Consensus 824 NAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 824 NAEEWLQCLNIAVAHAK 840 (851)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999996654
No 352
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.16 E-value=1.3e+03 Score=31.00 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=28.6
Q ss_pred ccccccccc---cCCCCCEEEEEecCce--EEEEEcCCcEEEEeC
Q 001236 270 DVLLPRPLE---SNVVLDVHHIACGVRH--AALVTRQGEVFTWGE 309 (1117)
Q Consensus 270 ~~~~P~~l~---s~~~~~I~~Ia~G~~H--s~~LT~dG~VyswG~ 309 (1117)
...+|-|+- ......|.+|+.+..+ .++++.+|.|+.|-.
T Consensus 411 ~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 411 RAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred ccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 334555542 2334679999999988 799999998777753
No 353
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.12 E-value=1.4e+02 Score=33.37 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
.+|+..+++++++|+.+-+.+..-|.+.+ +++|.+.+-.| -....+=|.+|..|++.|.++.-=
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~----L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERE----LSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhce
Confidence 35666777777777777665555555333 66665544333 234445589999999999988653
No 354
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=34.12 E-value=68 Score=31.12 Aligned_cols=35 Identities=9% Similarity=0.288 Sum_probs=30.2
Q ss_pred CCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHH
Q 001236 85 EKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGL 119 (1117)
Q Consensus 85 ~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL 119 (1117)
..--.||-|+...+..++=|.|.++++...|+..+
T Consensus 67 ~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 67 IDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAM 101 (104)
T ss_pred ccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhh
Confidence 44557999999887678999999999999999876
No 355
>PRK05560 DNA gyrase subunit A; Validated
Probab=34.10 E-value=1.2e+03 Score=30.69 Aligned_cols=214 Identities=10% Similarity=0.008 Sum_probs=100.7
Q ss_pred ecCCeEEEEEcCCcEEEEcCCC-CCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC-----CeeEEEccCCcEEEEe
Q 001236 342 CGEFHTCAVTMAGELYTWGDGT-HNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP-----WHTALITSTGQLFTFG 415 (1117)
Q Consensus 342 ~G~~hs~aLT~dG~VysWG~n~-~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~-----~HtlaLt~dG~Vy~wG 415 (1117)
....+.+++|..|++|..-... ...+..+.|.... ..+. +..+.+|+.+.+-. ...+++|.+|.+...-
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~----~ll~-L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~ 620 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIV----NLLP-LEPGEKITAILPVREFDDDKYLFFATKNGTVKKTS 620 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHH----HhcC-CCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEE
Confidence 3556678899999999874320 0011111111111 1122 34567888877654 3578889999877664
Q ss_pred CCCCCCcCCCCCCCcccceeecccccceEEEEeeCCc--eEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCc
Q 001236 416 DGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVW--HTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPR 493 (1117)
Q Consensus 416 ~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~--Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~ 493 (1117)
.+.+-....+. ...+..-.+..++.+..+.. +.+++ |+.|++|.+-..+--..|....
T Consensus 621 l~~~~~~~r~G------~~~ikLke~D~lv~v~~~~~~d~lll~-----------T~~Gr~~r~~~~eIp~~gr~~~--- 680 (805)
T PRK05560 621 LSEFSNIRSNG------IIAINLDEGDELIGVRLTDGDDDILLA-----------TKNGKAIRFPESDVRPMGRTAR--- 680 (805)
T ss_pred hHHhhhcccCC------ceeeccCCCCEEEEEEEeCCCCEEEEE-----------ECCCcEEEEEhhhcCccCcccC---
Confidence 43332111100 00011012234444433333 33333 6789999875543322222111
Q ss_pred ccceeecc-cCCCCEEEEEecC---cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEE--EeCCC
Q 001236 494 LKPTCVPA-LIDYNFHKVACGH---SLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEI--ACGAY 567 (1117)
Q Consensus 494 ~~P~~V~~-l~~~~I~~Ia~G~---~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~I--s~G~~ 567 (1117)
...+.. -.+..|+.+.... .+.+++|+.|.+.-.-.+++-....+. .--..+...-.+..++.+ ..+.+
T Consensus 681 --Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~---kG~~~lkl~~~~d~lv~v~~v~~~~ 755 (805)
T PRK05560 681 --GVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG---KGVITIKITEKNGKLVGALPVDDDD 755 (805)
T ss_pred --CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC---CcEEeeeccCCCCeEEEEEEecCCC
Confidence 111111 2334566655432 257788888877665433322111100 000011100011233332 23455
Q ss_pred cceeeecCCeEEEEeCCC
Q 001236 568 HVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 568 Ht~aLT~dG~Vy~WG~n~ 585 (1117)
..+++|.+|.+.-+-.+.
T Consensus 756 ~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 756 EIMLITDSGKLIRTRVSE 773 (805)
T ss_pred eEEEEecCCeEEEEEHHH
Confidence 688889999888776553
No 356
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=34.08 E-value=1.7e+02 Score=36.97 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
.+|+..|+.|++.|..+++..+.++..++.++++...
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~ 363 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEE 363 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888888877776443
No 357
>PF14182 YgaB: YgaB-like protein
Probab=34.04 E-value=3.8e+02 Score=24.75 Aligned_cols=68 Identities=25% Similarity=0.451 Sum_probs=37.2
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 821 ~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
|-+.+...++-+.++| .||+++ ++|+..+.+|.++.++++ ..++=.|=+.+.|+-|+|=+....|-.+
T Consensus 2 F~~LV~eQm~tMD~LL-----~LQsEl----ERCqeIE~eL~~l~~ea~-l~~i~~EI~~mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 2 FDKLVSEQMKTMDKLL-----FLQSEL----ERCQEIEKELKELEREAE-LHSIQEEISQMKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHH----HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677666655 455555 467777777777776643 2222223233445555555555544443
No 358
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=34.00 E-value=1.2e+03 Score=30.66 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=64.0
Q ss_pred EEecCceEEEEEcCCcEEEEeCCCC---CccCCCCCCceeccEEeccCCCCCeEEEEec-----CCeEEEEEcCCcEEEE
Q 001236 288 IACGVRHAALVTRQGEVFTWGEESG---GRLGHGVGKDIVQPHLLESLTMTSVDFVTCG-----EFHTCAVTMAGELYTW 359 (1117)
Q Consensus 288 Ia~G~~Hs~~LT~dG~VyswG~N~~---GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~VysW 359 (1117)
++....+.+++|+.|++|..-...- +..+.|.. ....+....+.+|+.+.+- ....+++|.+|.+.-.
T Consensus 542 ~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~----i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi 617 (800)
T TIGR01063 542 VASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP----IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKT 617 (800)
T ss_pred EecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC----HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEE
Confidence 4445666889999999999843221 11122211 1112333345677766652 2357788999977654
Q ss_pred cCCCCC-CCccCCCCCcceeeeeeecCCCCCCcEEEEEe--cCCeeEEEccCCcEEEEeCCCCCCcC
Q 001236 360 GDGTHN-AGLLGHGTDVSHWIPKRISGPLEGLQVASVTC--GPWHTALITSTGQLFTFGDGTFGVLG 423 (1117)
Q Consensus 360 G~n~~~-~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~--G~~HtlaLt~dG~Vy~wG~N~~GQLG 423 (1117)
-..... ....|. ......++..++.+.. ...+.+++|++|++|.+-....-..|
T Consensus 618 ~l~~~~~~~r~G~----------~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 618 SLTEFSNIRSNGI----------IAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred EhHHhhhhccCCc----------ccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 322110 000110 0000112334554433 33568999999999999765544444
No 359
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=34.00 E-value=1.8e+02 Score=32.17 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQV 847 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv 847 (1117)
.+++|--+.-|-..|..||-|+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQL 32 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQL 32 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4566655555555555555444
No 360
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=33.97 E-value=2e+02 Score=38.98 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=4.3
Q ss_pred eeecCCeEE
Q 001236 571 VLTSRNEVY 579 (1117)
Q Consensus 571 aLT~dG~Vy 579 (1117)
++|-+|.|+
T Consensus 641 ~vTldG~~~ 649 (1164)
T TIGR02169 641 MVTLEGELF 649 (1164)
T ss_pred EEEeCceeE
Confidence 345555544
No 361
>PRK14149 heat shock protein GrpE; Provisional
Probab=33.89 E-value=1.7e+02 Score=31.51 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
+++..|++++..|+.++-..-++++.++|+++.-...+.+- +..+.++++|-.|.+
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~-a~~~~~~~LLpVlDn 98 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEY-AYEKIALDLLPVIDA 98 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 34556777777777777777777775555554333222221 112445555444443
No 362
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.87 E-value=97 Score=32.35 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVE------------SLRQRCEFQELELQKSTKK 867 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~------------~l~~~~~~~~~~~~~~~~~ 867 (1117)
...-|..|+.+|+.|.. .|++|.+..+.||+++++.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666653 4555555555555544443
No 363
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=33.86 E-value=4.6e+02 Score=29.49 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCeeEEEccCCcEEEEeCCCCCC-cCCCCCCCcccceeec
Q 001236 389 GLQVASVTCGPWHTALITSTGQLFTFGDGTFGV-LGHGDRKNVSYPREVE 437 (1117)
Q Consensus 389 ~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQ-LG~g~~~~~~~P~~V~ 437 (1117)
+.+|-.++.-..|. +...+|.||.|-+|.+-. ++....-....|..+.
T Consensus 62 dgpiy~~~f~d~~L-ls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFL-LSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred CCCeeeeeeehhhe-eeccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 44566666655443 445569999999998866 5554433444555553
No 364
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=33.85 E-value=1.3e+02 Score=28.14 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
-|..||..|.++|..|.+.-+.....++..+.++..|-
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888887777777766654
No 365
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=1.1e+02 Score=30.51 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
.+.++|++.-+.|.-+|..|+.|-+.|.++.+....+|++
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777666655555553
No 366
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=33.71 E-value=2.9e+02 Score=26.28 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
+...-+-+.+.+.++..++..|+++--..+.|+.+..++.-+|+.
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr 52 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMR 52 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777778888888888888888888877776654
No 367
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.68 E-value=2.7e+02 Score=33.67 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=12.6
Q ss_pred hcccccccccccccccccccccCcceecc
Q 001236 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCH 663 (1117)
Q Consensus 635 ~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~ 663 (1117)
.+.|..|+..++. -.|.-||.+-|+
T Consensus 228 ~~~c~~c~~~~~L----wicliCg~vgcg 252 (493)
T KOG0804|consen 228 SSLCLACGCTEDL----WICLICGNVGCG 252 (493)
T ss_pred hhhhhhhcccccE----EEEEEccceecc
Confidence 3445555444432 136677766443
No 368
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=33.64 E-value=4.6e+02 Score=27.48 Aligned_cols=15 Identities=7% Similarity=0.251 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQR 853 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~ 853 (1117)
+..++++|.+.+..+
T Consensus 60 ~Ae~~~~eA~~~~~e 74 (175)
T PRK14472 60 RAHSAKDEAEAILRK 74 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 369
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.62 E-value=3e+02 Score=33.17 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.1
Q ss_pred EEeecCeeEEEEE
Q 001236 1038 IEQYEPGVYITLV 1050 (1117)
Q Consensus 1038 ~~~~epgv~~t~~ 1050 (1117)
.+|.+|..|+-|+
T Consensus 394 gg~~~p~LYfEiR 406 (420)
T COG4942 394 GGQGRPALYFEIR 406 (420)
T ss_pred CCCCCcchhhhhh
Confidence 5688899998764
No 370
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=33.61 E-value=2.4e+02 Score=29.19 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
.+.+-+.+..|.+.+.-...|+..|++..+..+..+++-.+.+++ =+.=|+.++.++++..++
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~--------------Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQE--------------LEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555556666666666566555555554 122245555566666665
No 371
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.51 E-value=1.3e+02 Score=40.31 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
.|+++++-+..+|+++.++++.+..++++++...+++.+..++--..+..+..+....+|+++.|.++...+-+.+-.
T Consensus 564 kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~ 641 (1317)
T KOG0612|consen 564 KLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKA 641 (1317)
T ss_pred hHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 466667777778888888888999999999988888888888777777778777777777777777655555444444
No 372
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.51 E-value=2.5e+02 Score=32.84 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHhcCCCC
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE---AMAVAAEESSKAKA-----AKDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e---~~~~a~~e~~~~ka-----ake~ik~lt~qlk~~~~~~~~~ 906 (1117)
-|.+|.++|++-.+..++|+|....-...+.+.+.- -+.--.+...+|+. .++.|+.|..++|+....+-..
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~Dm 87 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDM 87 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHH
Confidence 466777777777777777777665544444333221 11113333344433 4666677777777766666543
No 373
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=33.40 E-value=2.3e+02 Score=36.51 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
.-||+||+.|+..++.+=-.+-..||.++++++.|-.-..+--+ -|--|+++|+.|..
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~e-------ki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQE-------KINRLTEQLDALRK 321 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 67999999999999888888889999999999886555554333 36677777777665
No 374
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.29 E-value=2.6e+02 Score=36.49 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
.+..|.+|+.+|.++.+.|+-....-..+|+.++-+++|+-...++=-++...+++-=..+..||+.|.+.
T Consensus 590 ~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~ 660 (769)
T PF05911_consen 590 EKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKES 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666655555556666666666665555555555555555555555555555443
No 375
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=33.25 E-value=2.3e+02 Score=36.53 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
++.|..++..|++.++....++..++++++-+..+|.|=.++..+|.+-+-++..+|--|=..+..
T Consensus 400 ~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 400 VQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444447778888888888899988888899998888888877766555443
No 376
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=33.25 E-value=3.2e+02 Score=27.39 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHHHHH
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLKAL 122 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~~L 122 (1117)
...+|-|.|+++.|-+.||..|+-|
T Consensus 94 ~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 94 SKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred CccEEEEEeCCchHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 377
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=33.21 E-value=1.7e+02 Score=25.46 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
.+..|+.+|..|..+.+.+..+++.+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 378
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.06 E-value=2.1e+02 Score=39.39 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
+..|+.|++.|+++.+....+++...+++++.-.-..+--..+...++-|..|.+++.++.+
T Consensus 399 l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 460 (1163)
T COG1196 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443333333222222122334444444445444444333
No 379
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=33.03 E-value=4.6e+02 Score=28.53 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES 879 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~ 879 (1117)
+|..+++.+.+.+..+++ .+|.+.+++.++-+.-|++|+
T Consensus 94 ~~Ae~~k~eAe~~~~~ye---~~L~~Ar~eA~~Ii~~Ar~ea 132 (204)
T PRK09174 94 DQAARLKQEADAAVAAYE---QELAQARAKAHSIAQAAREAA 132 (204)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345555556555555533 344444444444444444433
No 380
>PRK14159 heat shock protein GrpE; Provisional
Probab=33.01 E-value=2.1e+02 Score=30.53 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
-+|+..|++++..|+.+.....++++-++|+.+.-..-+.+. +.-+.+++++-.|.+
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~-a~~~~~~~LLpV~Dn 85 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAY-ANESFAKDLLDVLDA 85 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHhH
Confidence 357778888888888888888888886666665544433332 223555555554443
No 381
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=33.00 E-value=1.6e+02 Score=35.80 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 001236 883 KAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 883 kaake~ik~lt~qlk~~~~ 901 (1117)
+.+.|.|+..-.||.-|..
T Consensus 399 ~~~~e~i~~kE~eLe~L~~ 417 (492)
T PF06273_consen 399 ESLREEISQKEKELEKLTR 417 (492)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5666667766666654443
No 382
>PLN02943 aminoacyl-tRNA ligase
Probab=32.90 E-value=75 Score=42.51 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 843 LRAQVESLRQRCEFQELELQKSTKKAQEA-------MAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 843 l~~qv~~l~~~~~~~~~~~~~~~~~~~e~-------~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
+.++++.|+.+.+..+.||+++++++... -.+..+|-+|-+..++-|..|..+|+.+.+-
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~ 953 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKST 953 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444444444445555555555555421 1456677777788888888888877777653
No 383
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.84 E-value=2e+02 Score=36.14 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 823 KSITDSLKKTNELL--NQEVLKLRAQVESLRQR-------CEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l--~~ev~~l~~qv~~l~~~-------~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
+......++.-+-| .+++..++.+|+.|+++ ..+..+|+++++++++..-..++.-...-+.+++.++...
T Consensus 174 k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~ 253 (555)
T TIGR03545 174 KAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADL 253 (555)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHhc
Q 001236 894 AQLKDMAER 902 (1117)
Q Consensus 894 ~qlk~~~~~ 902 (1117)
++||.+.+.
T Consensus 254 ~~lk~ap~~ 262 (555)
T TIGR03545 254 AELKKAPQN 262 (555)
T ss_pred HHHHhccHh
No 384
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.77 E-value=1.3e+02 Score=32.06 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 844 RAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 844 ~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+.++..|+++.+.++.+|..+.++|.+
T Consensus 28 ~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 28 QARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555544
No 385
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.73 E-value=2.4e+02 Score=32.00 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=11.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 879 SSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 879 ~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
-++.|..+.=|+.|...+++--+.|
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555444443333
No 386
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.70 E-value=2.9e+02 Score=35.41 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
+-|.+|+..++.+.+.++++....+.++++.+++++++
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666555555543
No 387
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=32.67 E-value=2.7e+02 Score=35.78 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE 878 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e 878 (1117)
..+....+...+++..|+.++..|++++...+.+..++.++++++|....+-
T Consensus 230 ~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 230 KPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667788999999999999999999999999999999999888876
No 388
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=32.63 E-value=2.7e+02 Score=33.01 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHhc-----CCCCCCCCC
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE-ESSKAKAAKDVIKSLTAQLKDMAER-----LPPGVYDPE 911 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~-e~~~~kaake~ik~lt~qlk~~~~~-----~~~~~~~~~ 911 (1117)
+|+..|+..|+.+.+ ++++.+.++++..|+.| +..=.+-|.+-++.|..+|++|-.+ ||.+.+|..
T Consensus 40 k~~~~l~~~v~~~~~--------~~~~~~~~~~~~el~~~~D~e~~~~a~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~ 111 (360)
T TIGR00019 40 KEYSQLEEIVDCYRE--------YQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEK 111 (360)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCC
Confidence 444555544444332 44445555566655532 1112234445567777787777654 788776543
No 389
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=32.45 E-value=4.7e+02 Score=27.69 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKA 882 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ 882 (1117)
+..+++.+++.+..+. +.+|+..++++++.+.-|.+|+.+.
T Consensus 66 ~Ae~~~~eA~~~~~e~---e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 66 NSEERREEAIEKLEKA---RARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443 3355555555555555555555443
No 390
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.38 E-value=2.3e+02 Score=26.25 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
+|+..+..|++.+-++-+.+-.+++.-.+++
T Consensus 40 ~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v 70 (90)
T PF06103_consen 40 EQVDPITKEINDLLHNTNELLEDVNEKLEKV 70 (90)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333333333333333333333333
No 391
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.36 E-value=2.1e+02 Score=30.44 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 842 KLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 842 ~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
.|.+|+..+.|+.......+++.++-.+++=..+-|=.-|..++|+++++|..+|--+-|
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555444444555444444444444444445566677777777666544433
No 392
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=32.34 E-value=1.9e+02 Score=31.20 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAA----------KDVIKSLTAQLKD 898 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaa----------ke~ik~lt~qlk~ 898 (1117)
||..|.-.+..|+++.+..+..+.-.++|++||---|.| ++++- -|.|+.+.+|||+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE---~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADE---SERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccH---HHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 393
>PF15456 Uds1: Up-regulated During Septation
Probab=32.25 E-value=2.5e+02 Score=28.23 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=29.9
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 001236 835 LL-NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA-MAVAAE 877 (1117)
Q Consensus 835 ~l-~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~-~~~a~~ 877 (1117)
+| .+||..|+.|+..|..+|+.....|. +..|+.+| ..+++-
T Consensus 18 iLs~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 18 ILSFEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 44 46888888888888888888888888 55555543 344444
No 394
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=32.19 E-value=7.7e+02 Score=28.14 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=10.9
Q ss_pred EEEecCCeEEEEeCC
Q 001236 518 VGLTTSGHVFTMGST 532 (1117)
Q Consensus 518 laLT~dG~Vy~wGsN 532 (1117)
.+..-+++||++|-.
T Consensus 166 ~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 166 VCVKLQNELYVFGGG 180 (323)
T ss_pred eEEEECCEEEEEcCC
Confidence 344557899999964
No 395
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=32.12 E-value=69 Score=33.26 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=35.3
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 821 ~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
+...+...++..-+-+.+++.+|+-..++|+++||+++.-|+....
T Consensus 58 l~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~ 103 (153)
T PF08287_consen 58 LRDEIEPQINHLLDKAEKHLEKLQRREETLKAKCELQQGRLSNYES 103 (153)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3344455566666667889999999999999999999988875443
No 396
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.11 E-value=1.9e+02 Score=26.38 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKS 864 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~ 864 (1117)
-+..|+.+++.|++.|+.+-+.+..|+.++
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555443
No 397
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=32.10 E-value=2.7e+02 Score=32.21 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
+.|++.-..|.||-..|+.++..++.+|..+..++..+.+..-..-
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788888888888888888888887777776655444333
No 398
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.08 E-value=97 Score=27.65 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.++.+++.|+..|+++.+.+..+.++++++++.
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888877777766
No 399
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.08 E-value=2e+02 Score=30.90 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
..+++.......++..|++++..|+.++..++.+|....+-++
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555678888888999999999998888887666554
No 400
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=31.92 E-value=69 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred cEEEEEecC-CeeEEEccCCcEEEE
Q 001236 391 QVASVTCGP-WHTALITSTGQLFTF 414 (1117)
Q Consensus 391 ~Iv~Va~G~-~HtlaLt~dG~Vy~w 414 (1117)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 689999999 888999999999863
No 401
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=31.91 E-value=3.9e+02 Score=25.63 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEV---LKLRAQV-ESLRQRCEFQE---LELQKSTKKAQEAMAVAAEESSKAKAAK-DVIKSLTAQLKD 898 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev---~~l~~qv-~~l~~~~~~~~---~~~~~~~~~~~e~~~~a~~e~~~~kaak-e~ik~lt~qlk~ 898 (1117)
++|.-.---|+..+ +++|++| +-|.++.+.-. +-+.++..-+-+.++-...|++|-=++- --.|.|..|||.
T Consensus 12 ~DL~~rYs~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKn 91 (107)
T PRK15365 12 RDLEQSYMQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQ 91 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455433 4455577 66666544211 2223444444444544555555543332 336889999999
Q ss_pred HHhcCCCCCC
Q 001236 899 MAERLPPGVY 908 (1117)
Q Consensus 899 ~~~~~~~~~~ 908 (1117)
|-..-|++++
T Consensus 92 lnt~~~~~~~ 101 (107)
T PRK15365 92 LNAQAPVEIP 101 (107)
T ss_pred cCCCCceeCC
Confidence 9888777653
No 402
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=31.82 E-value=4.4e+02 Score=27.42 Aligned_cols=17 Identities=24% Similarity=0.012 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001236 866 KKAQEAMAVAAEESSKA 882 (1117)
Q Consensus 866 ~~~~e~~~~a~~e~~~~ 882 (1117)
+..+|+..-|.+|+.+.
T Consensus 85 ~~~~ea~~eA~~ea~r~ 101 (154)
T PRK06568 85 KIIQEKTKEIEEFLEHK 101 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555443
No 403
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.79 E-value=3.6e+02 Score=36.81 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=30.4
Q ss_pred cceeeecc-cCCCCeEEEEeCCCcce--eeecCCeEEEEeCCCCCCCC
Q 001236 546 LPCLVEDK-LAGESVEEIACGAYHVA--VLTSRNEVYTWGKGANGRLG 590 (1117)
Q Consensus 546 ~P~~v~~~-l~~~~V~~Is~G~~Ht~--aLT~dG~Vy~WG~n~~GQLG 590 (1117)
+|.....+ ...+.|.+|+.+....+ ++++.|.|=+|=-+.+|.-|
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 45543332 33568999999987764 56788988888666666544
No 404
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=31.63 E-value=4.8e+02 Score=28.35 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001236 841 LKLRAQVESLRQR 853 (1117)
Q Consensus 841 ~~l~~qv~~l~~~ 853 (1117)
.+++++++.+.++
T Consensus 92 e~~~~eA~~~l~e 104 (205)
T PRK06231 92 NELKQQAQQLLEN 104 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 405
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=31.61 E-value=2.3e+02 Score=28.32 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=15.1
Q ss_pred EEeCCHHHHHHHHHHHH
Q 001236 104 LICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 104 Lva~~~~ea~~Wv~GL~ 120 (1117)
|-|.+++|.+.|+..|+
T Consensus 104 lsaDt~eer~~W~~ain 120 (122)
T cd01263 104 LSADTKEERQTWLSLLN 120 (122)
T ss_pred EecCCHHHHHHHHHHHh
Confidence 55899999999999986
No 406
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=31.58 E-value=3.4e+02 Score=33.27 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCC
Q 001236 882 AKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 882 ~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
--|+|+-=.-||++|+||-+|--
T Consensus 263 Lq~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 263 LQAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 34566666778888888877643
No 407
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=31.51 E-value=5.1e+02 Score=29.49 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
..||+.++.-..+.+-+|.||..++.||
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL 98 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQL 98 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555566666555554
No 408
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=31.45 E-value=1.6e+02 Score=35.46 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQ---------VESLRQRCEF-QELELQKSTKKAQEAMAVAAE--ESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~q---------v~~l~~~~~~-~~~~~~~~~~~~~e~~~~a~~--e~~~~kaake~ik~lt~ 894 (1117)
+.+.+.++++.+|+..+... +..|+++++. .+.||+|+-+|+... .-.+| |..=...+|.++...+.
T Consensus 316 ~~~~~a~~ii~~~~~~f~~~~~~~~~~p~I~~lr~~~~~i~~~el~~~~~~l~~~-~~~~~~~~~~~~~~~~k~lh~p~~ 394 (423)
T PRK00045 316 EAAEKAEAIVEEEVAEFMEWLRSLEVVPTIRALREQAEEIREEELERALKKLGPG-EDEEEVLEKLARSLVNKLLHAPTV 394 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888777553 5678888865 678999988887320 01111 12224566666677777
Q ss_pred HHHHHH
Q 001236 895 QLKDMA 900 (1117)
Q Consensus 895 qlk~~~ 900 (1117)
+||+.+
T Consensus 395 ~lr~~~ 400 (423)
T PRK00045 395 RLKEAA 400 (423)
T ss_pred HHHhhc
Confidence 888833
No 409
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=31.40 E-value=76 Score=42.71 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 846 QVESLRQRCEFQELELQKSTKKAQEA-------MAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~~e~-------~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
+++.|+++.+..+.||+++++++... -.+..+|-+|-...++-|..|...|+++.+
T Consensus 930 E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~ 992 (995)
T PTZ00419 930 ELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKS 992 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444321 134556666666777777777777766654
No 410
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=31.37 E-value=1.2e+02 Score=27.88 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
+.+-++.-.|+.|..+++..+.-||.+++||+|..
T Consensus 44 ~q~~k~~~~~~~L~~~~~r~~l~vQlt~EkLdel~ 78 (80)
T PF11488_consen 44 QQDCKTEMEVKMLETQDPRDELNVQLTQEKLDELL 78 (80)
T ss_pred HHHHHHHHHHHHHHHhchhhHHhHHHHHHhHHHHh
Confidence 33334444678899999999999999999988753
No 411
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.12 E-value=2.3e+02 Score=31.01 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
+..|+.++..|+++.+.++.++..++.++.- +.|-=|--|.+++||.-.....-...++..|-|
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR--~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLp 119 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLR--TVAEYDNYRKRTAKEKEGIYSDACEDVLKELLP 119 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666655444422 344456677788888777777666666665555
No 412
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.11 E-value=1.2e+02 Score=28.62 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
...-+.|.+++..+.++++.|+.+.+..+.++++++.++.+
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888888888888888888888887777764
No 413
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.03 E-value=94 Score=27.73 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
+-+-||+.|.+.+.++..|+++
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~ 40 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQ 40 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 414
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.98 E-value=5.6e+02 Score=27.67 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001236 831 KTNELLNQEVLKLRAQVESL 850 (1117)
Q Consensus 831 ~~~~~l~~ev~~l~~qv~~l 850 (1117)
..|.-|..|+..|+-|.++|
T Consensus 36 e~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 36 EGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 415
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.92 E-value=2.5e+02 Score=28.29 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.1
Q ss_pred CCceEEEEEc----CCcceEEEEeCCHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYN----NGKRSLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 87 ~~~~FSIiy~----~~~rtLDLva~~~~ea~~Wv~GL~ 120 (1117)
....|.|..- +..+.|-|.|+++.|...|+..|.
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 3577888763 235679999999999999999874
No 416
>PRK00736 hypothetical protein; Provisional
Probab=30.89 E-value=1.3e+02 Score=26.90 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcC
Q 001236 889 IKSLTAQLKDMAERL 903 (1117)
Q Consensus 889 ik~lt~qlk~~~~~~ 903 (1117)
++.|+.||+++.+..
T Consensus 42 l~~L~~rl~~~~~~~ 56 (68)
T PRK00736 42 LDALTERFLSLEEQA 56 (68)
T ss_pred HHHHHHHHHHhcccc
Confidence 666777888876543
No 417
>PRK00295 hypothetical protein; Provisional
Probab=30.85 E-value=1.4e+02 Score=26.63 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhc
Q 001236 889 IKSLTAQLKDMAER 902 (1117)
Q Consensus 889 ik~lt~qlk~~~~~ 902 (1117)
++.|+.||+++.+.
T Consensus 42 l~~L~~rl~~~~~~ 55 (68)
T PRK00295 42 MAALIKRQEEMVGQ 55 (68)
T ss_pred HHHHHHHHHHhhcc
Confidence 66677888887643
No 418
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=30.74 E-value=1.8e+02 Score=32.10 Aligned_cols=22 Identities=50% Similarity=0.533 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESL 850 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l 850 (1117)
|..-|++|.-|-..||++-++|
T Consensus 102 L~een~~L~~en~~Lr~~n~~L 123 (292)
T KOG4005|consen 102 LTEENEILQNENDSLRAINESL 123 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 419
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.65 E-value=68 Score=34.41 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=4.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
...+.+.+.-|.+.|..+-.+++.|+.+....+..|..++.
T Consensus 83 Lael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~ 123 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEA 123 (194)
T ss_dssp -------------------------------HHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 34566677766666666666555555555555544444433
No 420
>PRK06746 peptide chain release factor 2; Provisional
Probab=30.62 E-value=3.2e+02 Score=31.97 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHH-hcCCCCCCC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE--SSKAKAAKDVIKSLTAQLKDMA-ERLPPGVYD 909 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e--~~~~kaake~ik~lt~qlk~~~-~~~~~~~~~ 909 (1117)
|.+|+..|+.-|+.+.+ +....+.++++..|+.+| .+=..-|++-|+.|..+|+.+- +.||.+.+|
T Consensus 16 ~~ke~~~l~~~v~~~~~--------~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le~~~l~~~~~D 84 (326)
T PRK06746 16 VINEANALKDMVGKFRQ--------LDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYELQLLLSDPYD 84 (326)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 45677777776665543 333444445555554322 1222345555677777776654 567776654
No 421
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=30.58 E-value=61 Score=28.00 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
.+||.-|+.|+..|..+-.+++.|=+.+++
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888888777777666555443
No 422
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.40 E-value=1.7e+02 Score=36.64 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 001236 881 KAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 881 ~~kaake~ik~lt~qlk~~~ 900 (1117)
+.+||+++-+.++.+|++|.
T Consensus 373 R~~~a~~l~~~v~~~l~~L~ 392 (563)
T TIGR00634 373 RRKAAERLAKRVEQELKALA 392 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 35788999999999999853
No 423
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.38 E-value=2.6e+02 Score=31.35 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKA 884 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ka 884 (1117)
.+-+++.+++.....++.+.++...||.+++.|+++|-...++|-++-+.
T Consensus 160 ~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~ 209 (243)
T cd07666 160 QIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWKQ 209 (243)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467777777777777767888999999999999998877777766544
No 424
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=30.36 E-value=5.2e+02 Score=25.15 Aligned_cols=41 Identities=24% Similarity=0.198 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~ 877 (1117)
++.+.+|+++.+.+.+...+++..+++++..+++.-.+..+
T Consensus 24 s~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~ 64 (110)
T PF10828_consen 24 SQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEE 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888887777765444443
No 425
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.35 E-value=2.8e+02 Score=37.00 Aligned_cols=74 Identities=24% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk 897 (1117)
+..+++..-..-..+||....++++.|+.+.+..+.+.|+.......--.-+..|..|.-++++.+|.-.+.++
T Consensus 734 ~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~ 807 (1074)
T KOG0250|consen 734 SKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLR 807 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
No 426
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.34 E-value=2e+02 Score=34.74 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=35.9
Q ss_pred cccceEEeecCeeEEE-----EEEccCC----ccceeEEE-eeh-hccCh---hhHHHHHH---HhHhHHHhhhccc
Q 001236 1033 VEAEWIEQYEPGVYIT-----LVALRDG----TRDLKRVR-FSR-RRFGE---HQAETWWS---ENREKVYERYNVR 1092 (1117)
Q Consensus 1033 ~~~e~~~~~epgv~~t-----~~~~~~g----~~~~~rv~-fs~-~~f~~---~~a~~ww~---~n~~~~~~~~~~~ 1092 (1117)
...|++++.+-.++.| |+.=.|. +|.|-||. |.+ |+|.= .++..+-+ +|-+.|.+...++
T Consensus 242 ~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP 318 (429)
T COG0172 242 HRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP 318 (429)
T ss_pred hcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3459999777444444 3344455 68888874 776 77743 34444443 3666777776654
No 427
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=30.29 E-value=5.8e+02 Score=26.52 Aligned_cols=12 Identities=42% Similarity=0.315 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 001236 869 QEAMAVAAEESS 880 (1117)
Q Consensus 869 ~e~~~~a~~e~~ 880 (1117)
+|+..-|.+|+.
T Consensus 90 ~e~~~~a~~e~~ 101 (161)
T COG0711 90 EEIKAEAEEELE 101 (161)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 428
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=30.16 E-value=2.5e+02 Score=38.11 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.5
Q ss_pred EEEEEc
Q 001236 91 FSLIYN 96 (1117)
Q Consensus 91 FSIiy~ 96 (1117)
|..|+|
T Consensus 25 ~~~i~G 30 (1179)
T TIGR02168 25 ITGIVG 30 (1179)
T ss_pred cEEEEC
Confidence 444443
No 429
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.13 E-value=2.1e+02 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
.++..|++|+..+..+....+.++++++--+
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~ 35 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTL 35 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566665555555555555444433
No 430
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=29.99 E-value=4.5e+02 Score=24.33 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK--KAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~--~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
.-+...=+-+.+.|..|+.-=..|..+.+....+|+++.. .+.+.+.++. =..|....|.=+-+|-..++.|-+|
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445555555444455555555566655555 3333444555 5666666666666666666655554
No 431
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.85 E-value=2.2e+02 Score=29.75 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
..+.+-|+-|.+|+.+|+.+++.|+.+.+.+..+++.++..-+.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888887777777666554
No 432
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=29.85 E-value=1.7e+02 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
|.++..+|++|++.|.++....+..+.++++
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665555533
No 433
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=29.85 E-value=5.7e+02 Score=26.78 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRC 854 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~ 854 (1117)
+..+++.+++.+..++
T Consensus 61 ~A~~~~~ea~~~~~~~ 76 (174)
T PRK07352 61 EAEERLRQAAQALAEA 76 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 434
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=29.84 E-value=3.7e+02 Score=35.57 Aligned_cols=81 Identities=21% Similarity=0.157 Sum_probs=55.3
Q ss_pred hhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 824 SITDSLKKTNELLNQE-VLKLRAQVESLRQRCEFQ-ELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~e-v~~l~~qv~~l~~~~~~~-~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
.+....+.-.++|.|- ....+||.+..+++.+.| +++.-+-++.++||-.++.||..+..-- +.-...-.+++.+.+
T Consensus 807 ~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l-~~qr~e~~e~tk~~~ 885 (1018)
T KOG2002|consen 807 VIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKL-EKQREEYRERTKEIL 885 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455677777788764 456677988888887777 4555577888899988888887654432 222333336777788
Q ss_pred cCCC
Q 001236 902 RLPP 905 (1117)
Q Consensus 902 ~~~~ 905 (1117)
++|+
T Consensus 886 ~~~~ 889 (1018)
T KOG2002|consen 886 KLPE 889 (1018)
T ss_pred hccc
Confidence 8884
No 435
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=29.76 E-value=1.1e+03 Score=28.76 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=15.4
Q ss_pred EEEEecCcEEEEEecCCeEEEEe
Q 001236 508 HKVACGHSLTVGLTTSGHVFTMG 530 (1117)
Q Consensus 508 ~~Ia~G~~htlaLT~dG~Vy~wG 530 (1117)
+-|.-+..+.++=+++|.+|..-
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEEcccccEEEecCCcceEEeee
Confidence 34445667777778888888643
No 436
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.75 E-value=1.2e+02 Score=34.16 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~ 867 (1117)
++..|+.+|..|+=+.|.+.-+|+..+++
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~r 90 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVER 90 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 437
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.58 E-value=2.3e+02 Score=31.65 Aligned_cols=45 Identities=31% Similarity=0.425 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESS 880 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~ 880 (1117)
|..|+.+|+.+++.|+.+...++.++-...+.++++++.+.++--
T Consensus 115 l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888888888888888888888888877543
No 438
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=29.58 E-value=64 Score=36.18 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKS-TKKAQEAMAVAAEESSKAKAAKD 887 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~-~~~~~e~~~~a~~e~~~~kaake 887 (1117)
|+..+.+.||.++-+ .|.+ ++++. +|..+||++.+.-|.++++|+++
T Consensus 96 krkek~~iee~e~~~----q~~e-------~~~~i~qq~~~ea~e~~~~~e~~~~A~~~ 143 (279)
T PF07271_consen 96 KRKEKRMIEEKEEHE----QLAE-------QLGRISQQEETEAIEKTPSAEANAQAPEA 143 (279)
T ss_pred hhhHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHhhcCchhhhhcccccc
Confidence 455667777666522 2222 22222 23334555555556677777665
No 439
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=29.53 E-value=2.1e+02 Score=31.28 Aligned_cols=46 Identities=9% Similarity=0.193 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKA 882 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ 882 (1117)
.|..++.+++.+|..|+.+.+.++.+|+..+. ++.+.+|+..+++.
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~--k~~~l~ar~~~A~a 148 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARA--RQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34445555555555555555555555554422 23344555555443
No 440
>PF15294 Leu_zip: Leucine zipper
Probab=29.49 E-value=1.6e+02 Score=33.57 Aligned_cols=45 Identities=38% Similarity=0.527 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
++|+.|+.+|+++.+.|+.+....+ +.|..++.| =+-|.+||+++
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le----------~~at~~l~E-----------k~kl~~~L~~l 172 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLE----------KQATSALDE-----------KSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-----------HHHHHHHHHHH
No 441
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.14 E-value=2.9e+02 Score=30.98 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKK 867 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~ 867 (1117)
.+-|.+|+..|+.|+..-..+.+.......++.++
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~ 88 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQR 88 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333333333
No 442
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.07 E-value=1.3e+02 Score=27.46 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001236 850 LRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 850 l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
|+-..+....||+++++.+.+|
T Consensus 48 LKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443
No 443
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.99 E-value=2.2e+02 Score=34.29 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKD 887 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake 887 (1117)
.+|=+++.+|.+...+.-+....||+.-+..|+..++-+..+++|-..+-|
T Consensus 205 ~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 205 LEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445554444444444444444443333333
No 444
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.98 E-value=1.3e+02 Score=30.46 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 831 ~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
++-+.|...+..|..+++.|.++......+++...+++++
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555544444444444444444
No 445
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.92 E-value=3.3e+02 Score=33.84 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
+..-.-+.+++.+|++|+..|+++.+..+..+...+++.+
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~ 212 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG 212 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333344555556666666655555544444444444333
No 446
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=28.79 E-value=1.4e+02 Score=36.05 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIK 890 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik 890 (1117)
-|++++.-.+.=.++-..+...|+++++|-+||+.+|.|=-+|-+.+.++-.
T Consensus 24 GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn 75 (436)
T PF01093_consen 24 GVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCN 75 (436)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555566677889999999999999998889888888654
No 447
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=28.76 E-value=1.1e+02 Score=30.14 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSL 892 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~l 892 (1117)
.+|.+|.+.|+++.+.....+..+...+.| .++++++|+.|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e-----------~~~~~~~L~~l 42 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAE-----------LETAIETLEDL 42 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhc
Confidence 467778888888877777777777776666 45566777555
No 448
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.75 E-value=7.4e+02 Score=27.05 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ--EAMAVAAEESSKAKAAKDV 888 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~--e~~~~a~~e~~~~kaake~ 888 (1117)
..+.+++--..|.+|..+|..||..|+..-+.-...|..+.||=+ -+..+|+|=..-.|+-+.+
T Consensus 12 PKEq~r~wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rl 77 (227)
T KOG3229|consen 12 PKEQVREWQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRL 77 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777888888888888777766666666665555532 4455666655555555443
No 449
>PRK15396 murein lipoprotein; Provisional
Probab=28.73 E-value=1.8e+02 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
|..+|..|.++|..|.+.-+....++|..+.++.
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ 63 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAA 63 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555655555555555555555554444333
No 450
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=28.71 E-value=3.2e+02 Score=31.58 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
|+-|+++-++|+.....|.+|++.++..|.+.-++.+ -+..+.+|---.|+-|++.++++..+
T Consensus 132 n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-------l~~ql~~aKlq~~~~l~a~~ee~~~~ 194 (391)
T KOG1850|consen 132 NDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-------LWEQLGKAKLQEIKLLTAKLEEASIQ 194 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHH
No 451
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=28.66 E-value=5.4e+02 Score=24.77 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
..++.+++++.++.......-.....+.+||..-|.+=.+...+|..--..--.+++.|-||
T Consensus 31 d~~~~~a~~a~~~a~~a~~~A~~A~~~AdeA~~kA~~A~aaA~~Aqq~A~eAnek~~RMfek 92 (96)
T PF11839_consen 31 DEAQSTAEQAQATAASAQSAAASAQQRADEAASKADAALAAAEAAQQTADEANEKADRMFEK 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777666666667777777777666654444444444333334456666554
No 452
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=28.65 E-value=5.2e+02 Score=29.03 Aligned_cols=73 Identities=23% Similarity=0.209 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHh
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAK-AAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~k-aake~ik~lt~qlk~~~~ 901 (1117)
|++..++..+-..+|+.....+.++....+.+.++.+++++++-....++-+|.. .-.+|++.+..+.-+++.
T Consensus 80 l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~ 153 (256)
T PF14932_consen 80 LQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAH 153 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555566666777777777777777777777666555544443 334444444444444443
No 453
>PLN02372 violaxanthin de-epoxidase
Probab=28.57 E-value=3.3e+02 Score=32.63 Aligned_cols=19 Identities=16% Similarity=0.393 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 001236 881 KAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 881 ~~kaake~ik~lt~qlk~~ 899 (1117)
-.|..+++++-|.-++.++
T Consensus 426 lskee~~~l~~~~~~~~~v 444 (455)
T PLN02372 426 LSKEEKELLEKLKMEASEV 444 (455)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666654
No 454
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=28.57 E-value=1.3e+02 Score=29.21 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
|...--.|.+|+.-|+.++.+|-++--.+..|..++.+++-|
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 333333556788888999999988888888888999988887
No 455
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.55 E-value=4.8e+02 Score=25.74 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------------------------------------
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQE---LELQKSTK------------------------------------ 866 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~---~~~~~~~~------------------------------------ 866 (1117)
.+.|....+.|.+|+..|++|...|.++++..+ ..|..+.+
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Q ss_pred ---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 867 ---KAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 867 ---~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
.++||..+..+ |.+..++-++.|..++..+.+.+
T Consensus 81 vE~~~~eA~~~l~~---r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 81 VEKDLEEAIEFLDK---KIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred EEecHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 456
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=28.45 E-value=81 Score=41.80 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 873 AVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 873 ~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
.+..+|.+|-...++-|+.|..+|+.|
T Consensus 846 ~vve~e~~kl~~~~~~~~~l~~~l~~l 872 (874)
T PRK05729 846 EVVEKEREKLAEYEEKLAKLKERLARL 872 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666667777777777776665
No 457
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.45 E-value=6e+02 Score=26.97 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001236 865 TKKAQEAMAVAAEESSKA 882 (1117)
Q Consensus 865 ~~~~~e~~~~a~~e~~~~ 882 (1117)
++..++...-|.+|+++-
T Consensus 111 ~~~~~~~~~~A~~e~~~~ 128 (181)
T PRK13454 111 QAELDVAIAKADAEIAAK 128 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 458
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.45 E-value=2.3e+02 Score=39.12 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
-|.+++.++..++..+..+.+.++.+|+...++++
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~ 638 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIE 638 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333333
No 459
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.38 E-value=1.1e+02 Score=29.64 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHH
Q 001236 845 AQVESLRQRCEF----QELELQKSTKKAQ 869 (1117)
Q Consensus 845 ~qv~~l~~~~~~----~~~~~~~~~~~~~ 869 (1117)
+|++.|+++.+. +..+|++.+++|+
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 377777777777 8888888877764
No 460
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=28.23 E-value=2.5e+02 Score=26.10 Aligned_cols=35 Identities=34% Similarity=0.354 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
.-+..++-|.+|+..||..+..|.++.+....|-.
T Consensus 13 ~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~ 47 (80)
T PF10224_consen 13 LEKEEKEELIQEILELQDSLEALSDRVEEVKEENE 47 (80)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888877777776554443333
No 461
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.22 E-value=3.6e+02 Score=23.46 Aligned_cols=56 Identities=27% Similarity=0.244 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
.+++..+++-++.|+.+..--.-.||-..-=+ +..|...|+|.|+.++.+++++++
T Consensus 3 ~~~~~~~~~~~~~lR~~RHD~~NhLqvI~gll---------qlg~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 3 KQQLEELEELIDSLRAQRHDFLNHLQVIYGLL---------QLGKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777666555555555333222 235667788999999999988764
No 462
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.18 E-value=2.4e+02 Score=30.64 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAA 885 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaa 885 (1117)
+.|.+...+.+|+|.|..++.++..+++........-.+++++++++-..+.+=..+.+.|
T Consensus 17 ~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 17 LLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667888888888888888888888888888888888888776666544444444
No 463
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=28.14 E-value=7e+02 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSK 881 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~ 881 (1117)
.++|.+.+.|..+ .+.+|+...++.++.+.-|.+++.+
T Consensus 48 e~~r~eA~~l~~e---~e~~L~~Ar~EA~~Ii~~A~~~a~~ 85 (154)
T PRK06568 48 EKLKEDAALLFEQ---TNAQIKKLETLRSQMIEESNEVTKK 85 (154)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 4455556666666666556555543
No 464
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.11 E-value=3.1e+02 Score=32.47 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE-ESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~-e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
++..+++++..++.+.+....+++..+.++.++..-... ...+...+++-|..+.++|..+.++|
T Consensus 204 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 204 ERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433322222 22334455555666666655554444
No 465
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.95 E-value=2.2e+02 Score=37.80 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001236 831 KTNELLNQEVLKLRAQV-----------------------ESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKD 887 (1117)
Q Consensus 831 ~~~~~l~~ev~~l~~qv-----------------------~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake 887 (1117)
|.-.-|.+||.+||+++ +.|.+|++.+|.++.+++ |+|. +|-+-|.+
T Consensus 361 KLIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~----etW~------EKl~~aEa 430 (1221)
T KOG0245|consen 361 KLIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELN----ETWE------EKLREAEA 430 (1221)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHH----HHHH------HHHHHHHH
Confidence 44445789999999853 444444444444444333 3332 24455555
Q ss_pred HHHHHHHHHHHHH
Q 001236 888 VIKSLTAQLKDMA 900 (1117)
Q Consensus 888 ~ik~lt~qlk~~~ 900 (1117)
+-++=++.|++|-
T Consensus 431 ir~e~~~~L~emG 443 (1221)
T KOG0245|consen 431 IRMEREALLAEMG 443 (1221)
T ss_pred HHHhHHHHHHhcC
Confidence 5555555677664
No 466
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=27.94 E-value=6.6e+02 Score=25.83 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEES 879 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~ 879 (1117)
++..+++.|++.+..+++.+ |+..++++++-+.-|.+|+
T Consensus 63 ~~Ae~~~~ea~~~~~e~e~~---L~~A~~ea~~ii~~A~~~a 101 (156)
T CHL00118 63 TKASEILAKANELTKQYEQE---LSKARKEAQLEITQSQKEA 101 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45556666666665554433 3333333333333333333
No 467
>PRK00736 hypothetical protein; Provisional
Probab=27.77 E-value=2.4e+02 Score=25.14 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 845 AQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 845 ~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
+.++.|+.|.-.||.-|+.+.+-+-+=+ + .|..|+.||+.|.+||-.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq---~-----------~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQW---K-----------TVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHHHHHH
Confidence 3466666666666666655554433211 1 267788888888888854
No 468
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=27.75 E-value=3.6e+02 Score=29.41 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLR-------QRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~-------~~~~~~~~~~~~~~~~~~e 870 (1117)
+++++.+++++++.|+ .|.+..+.||+.+++++++
T Consensus 120 ~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~ 161 (216)
T cd07627 120 AESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASE 161 (216)
T ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888887774 4555666666655554444
No 469
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.71 E-value=13 Score=41.80 Aligned_cols=45 Identities=31% Similarity=0.677 Sum_probs=29.2
Q ss_pred ccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhh
Q 001236 637 QCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1117)
Q Consensus 637 ~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~ 695 (1117)
.|.-|-. .+...-|--||.+||+.| .+.+...+.. |+-|-.+.+.
T Consensus 241 kC~LCLe----~~~~pSaTpCGHiFCWsC--------I~~w~~ek~e--CPlCR~~~~p 285 (293)
T KOG0317|consen 241 KCSLCLE----NRSNPSATPCGHIFCWSC--------ILEWCSEKAE--CPLCREKFQP 285 (293)
T ss_pred ceEEEec----CCCCCCcCcCcchHHHHH--------HHHHHccccC--CCcccccCCC
Confidence 4555542 233446899999999999 2333433444 9999887654
No 470
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.69 E-value=1.7e+02 Score=33.04 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 001236 888 VIKSLTAQLKDM 899 (1117)
Q Consensus 888 ~ik~lt~qlk~~ 899 (1117)
-|+.|..|++++
T Consensus 247 EIreLE~k~~~L 258 (259)
T PF08657_consen 247 EIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHhc
Confidence 366666666553
No 471
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=27.68 E-value=1.1e+02 Score=29.21 Aligned_cols=32 Identities=16% Similarity=0.399 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+||.+++++ ..|++|||.+..--+.+++.+.+
T Consensus 65 ~NerLqqa~---~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 65 MNERLQQAR---DQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555555 56788888888777777776654
No 472
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=27.63 E-value=4.1e+02 Score=27.05 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQ 852 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~ 852 (1117)
.++..+|+++++.|+.
T Consensus 33 ~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 33 EQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 473
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.63 E-value=6.5e+02 Score=26.63 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEE 878 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e 878 (1117)
|..+++.+.+.+..+++.+ |+..+++.++-+.-|.+|
T Consensus 69 ~Ae~~~~eA~~~l~e~e~~---L~~A~~ea~~Ii~~A~~~ 105 (184)
T PRK13455 69 EARALREEAQTLLASYERK---QREVQEQADRIVAAAKDE 105 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4444455555444443333 333334444333333333
No 474
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.56 E-value=1.7e+02 Score=35.10 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQE 858 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~ 858 (1117)
.++.-+-|.+++.+|+.+++.|+.+++...
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344555677788888888877777655544
No 475
>PRK10780 periplasmic chaperone; Provisional
Probab=27.46 E-value=6.3e+02 Score=26.27 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRC 854 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~ 854 (1117)
.++.++-|..|...++++++.+....
T Consensus 41 ~k~~~~~le~~~~~~q~el~~~~~el 66 (165)
T PRK10780 41 RTGVSKQLENEFKGRASELQRMETDL 66 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444433
No 476
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=27.45 E-value=5.6e+02 Score=26.63 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
-=+-.|+..+.+|+++.+.+..+|+..=|+.
T Consensus 15 lvl~~l~~~Ir~lq~~~e~k~~~l~e~l~~~ 45 (175)
T COG4741 15 LVLYLLRAYIRSLQGKVESKARELEETLQKA 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888777776666443333
No 477
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.45 E-value=4.7e+02 Score=23.72 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
+.|.+|+.+-+.|..+=..+..-|.++.++++|.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556666666666666555666666666665553
No 478
>PRK00846 hypothetical protein; Provisional
Probab=27.43 E-value=5e+02 Score=23.98 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 843 LRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 843 l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
+.+.+..|+.+.-.||.-|+.+.+.+-+-+..-. .-++-|+.|+.+||+|....
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~-------~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGA-------RNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccc
Confidence 3455666666666666666655554444332211 12223555666666665443
No 479
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.31 E-value=3.2e+02 Score=29.55 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
+.|.+..+.|.+.-..|..+...|.++.+..+.-++...++|++...|-.|||. +.+++.|..+++.
T Consensus 99 ~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~eEAk-----~~Ll~~le~e~~~ 165 (201)
T PF12072_consen 99 EQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTAEEAK-----EILLEKLEEEARR 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHHHHHHH
No 480
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.30 E-value=1.1e+03 Score=27.81 Aligned_cols=48 Identities=33% Similarity=0.330 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~ 874 (1117)
.+||.+.|.|+.-.++|++.++.|+|+.......+.-+++|.+||..-
T Consensus 235 ~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 235 ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 567777777777778888888888888887778888888888874433
No 481
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=27.23 E-value=2.9e+02 Score=36.01 Aligned_cols=72 Identities=24% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQ-KSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLK 897 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~-~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk 897 (1117)
..+.++.--..|..|+.+|+-.+.++.+....+-.+|. ++++|-.++-.++.+|-++..+++|.-++ ..||+
T Consensus 495 ~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~s-i~ql~ 567 (980)
T KOG0980|consen 495 ALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERS-INQLE 567 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh-HHHhh
No 482
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.23 E-value=2e+02 Score=32.23 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=8.5
Q ss_pred HHHHHHHhcCCC
Q 001236 894 AQLKDMAERLPP 905 (1117)
Q Consensus 894 ~qlk~~~~~~~~ 905 (1117)
+-|+..+.-.|+
T Consensus 99 ~~l~~~aG~v~V 110 (247)
T COG3879 99 EKLRMLAGSVPV 110 (247)
T ss_pred HHHHHHhccCCC
Confidence 357777777776
No 483
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=27.23 E-value=1.8e+02 Score=37.92 Aligned_cols=65 Identities=34% Similarity=0.443 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA------------QEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~------------~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~ 900 (1117)
.|..|+.+-|.--..+..||+-.+.||++.++.. +--|.||+- |.|-----|=|-+|-.|||.|+
T Consensus 684 ~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaA-A~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 684 SLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAA-AEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555677888999999999887643 222233322 2344444577999999999998
No 484
>PF14645 Chibby: Chibby family
Probab=27.18 E-value=3.1e+02 Score=27.20 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELEL 861 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~ 861 (1117)
-+.-|.+|+++|+++..-|+-|++.+---|
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDML 101 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDML 101 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466667777777776766666654443
No 485
>PRK14127 cell division protein GpsB; Provisional
Probab=27.17 E-value=1.8e+02 Score=28.62 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+....=+.+.+++..|..++..|+++...++.+|..++.++.+
T Consensus 27 EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333344566777777777777777777777777777776664
No 486
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=27.16 E-value=5.8e+02 Score=29.57 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=40.4
Q ss_pred hhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhhhhh
Q 001236 826 TDSLKKTNELL---NQEVLKLRAQVESLRQRCEFQELEL------------------QKSTKKAQEAMAVAAEESSKAKA 884 (1117)
Q Consensus 826 ~~~~~~~~~~l---~~ev~~l~~qv~~l~~~~~~~~~~~------------------~~~~~~~~e~~~~a~~e~~~~ka 884 (1117)
.+...++++.| +.+|..|+.+|++|+.+.+....++ ....+++.++..--..|..|...
T Consensus 73 ~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 73 RANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544 4577777777777777764332221 22333333333322334444555
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 001236 885 AKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 885 ake~ik~lt~qlk~~~~~~~ 904 (1117)
+-+-.+.+.++|.++.++.-
T Consensus 153 ~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 153 MQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666555544
No 487
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.15 E-value=4.1e+02 Score=27.59 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----
Q 001236 823 KSITDSLKKTNELLNQ---EVLKLRAQVESLRQRCEFQELELQ-KSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA---- 894 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~---ev~~l~~qv~~l~~~~~~~~~~~~-~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~---- 894 (1117)
+.-.....++-+-|.. .+..|++|++.|+.+.+....+.+ ++.+...+.+.-.+=-.+|++-++-|..-|..
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~akakn~~av~allD~d~l~ 112 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKGAKAKNPKAVKALLDLDKLK 112 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHhcCHHHee
Q ss_pred -----------HHHHHHhcCC
Q 001236 895 -----------QLKDMAERLP 904 (1117)
Q Consensus 895 -----------qlk~~~~~~~ 904 (1117)
||+.+.|.-|
T Consensus 113 l~~dg~~Gldeqi~~lkes~~ 133 (155)
T PF06810_consen 113 LDDDGLKGLDEQIKALKESDP 133 (155)
T ss_pred eCCCccccHHHHHHHHHhcCc
No 488
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.14 E-value=1.5e+02 Score=37.88 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhcC
Q 001236 889 IKSLTAQLKDMAERL 903 (1117)
Q Consensus 889 ik~lt~qlk~~~~~~ 903 (1117)
|+.|.++|||+-++|
T Consensus 488 i~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 488 IDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665554
No 489
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=27.11 E-value=6.8e+02 Score=25.45 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQR 853 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~ 853 (1117)
|..+++.+++.+.++
T Consensus 46 ~a~~~~~~a~~~~~e 60 (156)
T PRK05759 46 AAERAKKELELAQAK 60 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 490
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.07 E-value=47 Score=40.57 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
.|+|.+|+.|++.|++|.+.++.+|.+.++
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 346666666666666666655555555444
No 491
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=27.06 E-value=2.7e+02 Score=33.32 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=50.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCE----------FQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSL 892 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~----------~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~l 892 (1117)
+.....|++-|..|++|-.++++.++.|+.+-. +...|+++-+-.+.+|+..-+|+-.|.+-+..+-+.+
T Consensus 54 E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~ 133 (459)
T KOG0288|consen 54 ELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEAL 133 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHh
Confidence 344577899999999999888887665555433 3334455555556678888888888888877766655
Q ss_pred HH
Q 001236 893 TA 894 (1117)
Q Consensus 893 t~ 894 (1117)
.+
T Consensus 134 ~~ 135 (459)
T KOG0288|consen 134 KD 135 (459)
T ss_pred hh
Confidence 54
No 492
>PF15408 PH_7: Pleckstrin homology domain
Probab=27.06 E-value=66 Score=29.95 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=52.8
Q ss_pred HHHhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEE-EEcC
Q 001236 19 IALKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSL-IYNN 97 (1117)
Q Consensus 19 ~~L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSI-iy~~ 97 (1117)
=+|..|-+|.-+--||-|..+.|.|+..... +++.+-++.. +..--..|-| .|+-
T Consensus 16 F~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s-----------~Pm~~~~~A~-------------~N~Gi~A~G~L~~~~ 71 (104)
T PF15408_consen 16 FVMLRSKQFNMYEDKGGQYLCSFQLSSSVVS-----------HPMVNFSQAV-------------PNLGINAFGFLMYSP 71 (104)
T ss_pred HHhhhhceeEEecccCCceeeeeehhhhhhh-----------cccccccccC-------------CCCCeeEEEEEEecC
Confidence 3567788888888899999999998754332 2333222211 1111234544 5566
Q ss_pred CcceEEEEeCCHHHHHHHHHHHH
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~ 120 (1117)
..+-|-+.|.+++.+..|++.|+
T Consensus 72 ~~~~~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 72 SRRHVQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred CcchhhhhhhHHHHHHHHHHHhc
Confidence 67889999999999999999875
No 493
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=26.98 E-value=1.1e+02 Score=23.05 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCeEEEEecC-CeEEEEEcCCcEEEE
Q 001236 335 TSVDFVTCGE-FHTCAVTMAGELYTW 359 (1117)
Q Consensus 335 ~~I~~Va~G~-~hs~aLT~dG~VysW 359 (1117)
..+++|++|. ....+|+.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4789999999 888899999999864
No 494
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.86 E-value=2.8e+02 Score=33.34 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=32.8
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 822 SKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1117)
Q Consensus 822 ~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~ 877 (1117)
-...+-+|+++-..|++++..|..+++..+++|. +.+.+-+|++--.-+.|+-
T Consensus 231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r---~~~k~g~K~iA~~ylr~rk 283 (439)
T KOG2911|consen 231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLR---QALKEGKKQIAITYLRARK 283 (439)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHHHHHHH
Confidence 3445677888888888888888888877777776 3333444444333333333
No 495
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=26.85 E-value=5.1e+02 Score=23.93 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~ 877 (1117)
+.+++..++.|+++.+..-.|+..+-++..+-..-+.+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333333
No 496
>PRK04406 hypothetical protein; Provisional
Probab=26.73 E-value=1.6e+02 Score=26.92 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 831 KTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 831 ~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
|+-+.|.+.+..|..++.=+..-.+.++..|-+-++++.+ +.+. ++.|..||+++...
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~---L~~q-----------l~~L~~rl~~~~~~ 61 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITK---MQDQ-----------MKYVVGKVKNMDSS 61 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----------HHHHHHHHHhhccc
Confidence 3444567777777776655555555555555555544432 1111 66678888887643
No 497
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.71 E-value=2.7e+02 Score=37.39 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
+...+++++--..+++|..+....+..|++.-++....+++..++++| |+.--++++.--+|+++|- +||+
T Consensus 541 ~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE----~ks~~~~~~s~~kVl~al~-r~ke 611 (1293)
T KOG0996|consen 541 KTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEE----AKSSLSSSRSRNKVLDALM-RLKE 611 (1293)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhHHHHHHH-HHHH
No 498
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=26.69 E-value=1.9e+02 Score=33.31 Aligned_cols=23 Identities=52% Similarity=0.475 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 001236 864 STKKAQEAMAVAAEESSKAKAAK 886 (1117)
Q Consensus 864 ~~~~~~e~~~~a~~e~~~~kaak 886 (1117)
-+++.+++.+-|.+|++|.||+-
T Consensus 145 ~kk~aE~a~aka~aEA~k~Ka~a 167 (387)
T COG3064 145 QKKKAEAAKAKAAAEAAKLKAAA 167 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Confidence 34555666677777777755543
No 499
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=26.67 E-value=98 Score=34.53 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=26.7
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 821 FSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 821 ~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
.++....-+.-.|++|+=.| -++.|.++.+.++.+|+++.++++++..
T Consensus 185 DP~AAa~vve~lnk~~~l~V-----~td~L~keAe~i~~~lekl~eq~~~~~~ 232 (244)
T COG1938 185 DPRAAARVVEALNKMLGLNV-----DTDKLEKEAEEIEEQLEKLAEQLEKEEE 232 (244)
T ss_pred ChHHHHHHHHHHHHHhcCcc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566554333 2555666666666666666666666544
No 500
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=26.65 E-value=3.1e+02 Score=37.18 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
...++..-..+.+++..++.++..|..+.+..+.++++.+.++.+.-.-..+-.+......+-|+.|..++..+.+++
T Consensus 805 l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 882 (1179)
T TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Done!