Query 001236
Match_columns 1117
No_of_seqs 794 out of 3137
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 1.2E-65 4E-70 598.7 36.4 372 232-628 12-388 (389)
2 4d9s_A UVB-resistance protein 100.0 2.2E-62 7.5E-67 574.3 40.1 353 230-607 25-379 (406)
3 1a12_A RCC1, regulator of chro 100.0 2.1E-61 7.2E-66 566.8 44.1 367 233-629 20-411 (413)
4 3mvd_K Regulator of chromosome 100.0 6.3E-61 2.1E-65 564.0 45.2 365 232-627 35-418 (423)
5 3of7_A Regulator of chromosome 100.0 2.4E-61 8E-66 576.5 41.8 369 234-627 23-450 (473)
6 4d9s_A UVB-resistance protein 100.0 4.5E-60 1.6E-64 554.7 43.3 349 282-659 15-365 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 6.4E-57 2.2E-61 525.0 31.8 344 287-658 5-352 (389)
8 3mvd_K Regulator of chromosome 100.0 8.4E-55 2.9E-59 511.9 34.2 340 282-658 23-381 (423)
9 1a12_A RCC1, regulator of chro 100.0 4.5E-54 1.5E-58 504.6 33.2 335 287-658 12-372 (413)
10 3of7_A Regulator of chromosome 100.0 6.3E-54 2.1E-58 512.4 28.4 342 285-659 12-413 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 6.7E-48 2.3E-52 430.5 33.9 249 283-627 24-272 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.6E-41 9E-46 377.3 27.7 240 234-579 37-276 (282)
13 1mai_A Phospholipase C delta-1 99.9 8.3E-25 2.8E-29 216.6 11.9 115 12-126 4-123 (131)
14 2zkm_X 1-phosphatidylinositol- 99.5 2.8E-14 9.6E-19 178.9 11.2 112 17-128 13-139 (799)
15 3ohm_B 1-phosphatidylinositol- 99.5 1.7E-14 5.8E-19 180.9 8.8 108 19-126 19-141 (885)
16 3a98_B Engulfment and cell mot 99.5 6.4E-14 2.2E-18 147.5 10.7 115 15-130 26-156 (203)
17 3qr0_A Phospholipase C-beta (P 99.5 6.7E-14 2.3E-18 174.7 9.5 107 19-125 20-143 (816)
18 1x4u_A Zinc finger, FYVE domai 99.3 4.1E-13 1.4E-17 122.3 4.9 71 627-697 6-80 (84)
19 1z2q_A LM5-1; membrane protein 99.2 1.7E-12 6E-17 118.1 2.7 69 626-696 12-80 (84)
20 2yw8_A RUN and FYVE domain-con 99.2 2.9E-12 9.9E-17 116.1 3.6 71 622-696 6-76 (82)
21 1joc_A EEA1, early endosomal a 99.2 8.3E-12 2.8E-16 122.0 4.3 65 626-694 60-124 (125)
22 1vfy_A Phosphatidylinositol-3- 99.2 8E-12 2.7E-16 110.7 2.8 67 626-697 5-71 (73)
23 3t7l_A Zinc finger FYVE domain 99.2 1.1E-11 3.8E-16 114.2 3.8 69 626-698 11-79 (90)
24 1wfk_A Zinc finger, FYVE domai 99.1 4.5E-11 1.5E-15 109.5 4.4 63 633-698 7-69 (88)
25 3zyq_A Hepatocyte growth facto 99.0 1.5E-10 5.3E-15 124.5 2.7 68 626-698 158-225 (226)
26 1dvp_A HRS, hepatocyte growth 98.9 1.9E-10 6.4E-15 123.5 3.0 65 626-695 155-219 (220)
27 1y02_A CARP2, FYVE-ring finger 98.9 3.1E-10 1.1E-14 109.3 2.1 59 628-696 12-70 (120)
28 3mpx_A FYVE, rhogef and PH dom 98.7 2.1E-09 7.2E-14 126.5 0.0 67 626-695 366-432 (434)
29 2lul_A Tyrosine-protein kinase 97.5 0.00072 2.5E-08 68.8 12.4 85 37-129 37-126 (164)
30 1v5u_A SBF1, SET binding facto 97.2 0.00082 2.8E-08 63.4 8.1 96 26-126 13-113 (117)
31 1btk_A Bruton'S tyrosine kinas 97.1 0.0015 5.1E-08 66.8 10.1 91 33-128 22-136 (169)
32 2d9v_A Pleckstrin homology dom 97.1 0.0031 1E-07 61.3 11.7 97 26-126 13-116 (130)
33 1fao_A Dual adaptor of phospho 96.9 0.0036 1.2E-07 60.0 9.8 92 22-128 20-116 (126)
34 2dhk_A TBC1 domain family memb 96.9 0.0045 1.5E-07 59.0 10.2 84 26-124 13-104 (119)
35 2cod_A Centaurin-delta 1; ARF 96.8 0.0053 1.8E-07 57.8 9.7 83 22-123 10-98 (115)
36 2rlo_A Centaurin-gamma 1; spli 96.7 0.0076 2.6E-07 58.2 10.5 97 26-125 9-125 (128)
37 1v89_A Hypothetical protein KI 96.7 0.0091 3.1E-07 56.0 10.6 90 27-126 14-114 (118)
38 2d9x_A Oxysterol binding prote 96.7 0.0037 1.3E-07 59.6 7.8 86 26-125 13-105 (120)
39 1eaz_A Tandem PH domain contai 96.6 0.006 2E-07 58.1 8.6 93 21-126 15-113 (125)
40 1pls_A Pleckstrin homology dom 96.5 0.011 3.9E-07 55.3 10.2 88 27-126 11-103 (113)
41 2cof_A Protein KIAA1914; PH do 96.5 0.0094 3.2E-07 55.6 9.1 88 22-124 10-101 (107)
42 1x05_A Pleckstrin; PH domain, 96.4 0.0093 3.2E-07 57.3 8.9 98 22-126 20-122 (129)
43 2dn6_A KIAA0640 protein; PH do 96.4 0.0081 2.8E-07 56.3 8.1 90 22-125 10-104 (115)
44 2i5f_A Pleckstrin; PH domain, 96.3 0.012 4E-07 54.6 8.8 89 27-123 13-108 (109)
45 2da0_A 130-kDa phosphatidylino 96.3 0.014 4.7E-07 55.1 9.3 90 22-127 12-104 (114)
46 1x1g_A Pleckstrin 2; PH domain 96.3 0.007 2.4E-07 58.1 7.2 101 21-127 19-127 (129)
47 1fgy_A GRP1; PH domain, signal 96.2 0.014 4.9E-07 55.5 8.9 89 23-126 8-122 (127)
48 1qqg_A IRS-1, insulin receptor 96.2 0.014 4.7E-07 64.0 9.8 81 33-126 20-114 (264)
49 3rcp_A Pleckstrin homology dom 96.1 0.028 9.5E-07 51.7 10.3 83 26-125 4-94 (103)
50 1wgq_A FYVE, rhogef and PH dom 96.1 0.028 9.7E-07 52.2 10.2 88 22-124 10-103 (109)
51 2rsg_A Collagen type IV alpha- 96.1 0.016 5.6E-07 52.4 8.2 78 26-121 6-91 (94)
52 1wg7_A Dedicator of cytokinesi 95.9 0.025 8.5E-07 55.9 9.6 79 34-125 39-125 (150)
53 1v5p_A Pleckstrin homology dom 95.9 0.035 1.2E-06 53.8 10.3 90 25-123 19-119 (126)
54 1dyn_A Dynamin; signal transdu 95.8 0.047 1.6E-06 52.6 10.3 74 36-122 30-116 (125)
55 2w2x_D 1-phosphatidylinositol- 95.8 0.026 8.9E-07 54.3 8.6 91 22-124 14-119 (124)
56 1unq_A RAC-alpha serine/threon 95.5 0.032 1.1E-06 53.3 8.1 94 22-125 10-111 (125)
57 1u5d_A SKAP55, SRC kinase-asso 95.4 0.057 1.9E-06 49.5 9.2 78 37-124 24-105 (108)
58 2d9y_A Pleckstrin homology dom 95.3 0.073 2.5E-06 49.7 9.8 88 22-123 13-108 (117)
59 2rov_A RHO-associated protein 95.3 0.029 1E-06 53.7 7.0 86 34-124 19-115 (117)
60 3aj4_A Pleckstrin homology dom 95.3 0.037 1.3E-06 51.6 7.6 94 27-123 11-110 (112)
61 1x1f_A Signal-transducing adap 95.3 0.1 3.5E-06 52.2 11.1 92 20-126 18-115 (149)
62 3tfm_A Myosin X; split PH doma 95.2 0.054 1.9E-06 57.8 9.6 73 37-125 80-156 (228)
63 1u5f_A SRC-associated adaptor 95.2 0.085 2.9E-06 51.9 10.2 79 37-125 38-120 (148)
64 1u5e_A SRC-associated adaptor 95.1 0.082 2.8E-06 55.9 10.5 80 34-124 125-208 (211)
65 2j59_M RHO-GTPase activating p 95.1 0.076 2.6E-06 53.5 9.6 76 33-124 27-111 (168)
66 2y7b_A Actin-binding protein a 95.0 0.062 2.1E-06 51.7 8.5 78 37-124 24-128 (134)
67 1upq_A PEPP1; PH domain, phosp 94.7 0.16 5.4E-06 48.0 10.3 77 37-124 29-109 (123)
68 1p22_A F-BOX/WD-repeat protein 94.7 7.6 0.00026 44.0 27.8 241 283-585 174-414 (435)
69 1wjm_A Beta-spectrin III; PH d 94.4 0.099 3.4E-06 49.7 8.3 41 86-127 80-120 (123)
70 2dkp_A Pleckstrin homology dom 94.4 0.091 3.1E-06 50.0 7.9 91 21-123 22-118 (128)
71 1v88_A Oxysterol binding prote 94.3 0.22 7.5E-06 48.4 10.4 76 37-125 24-125 (130)
72 2yry_A Pleckstrin homology dom 94.3 0.2 6.7E-06 47.2 9.9 90 22-123 24-119 (122)
73 2zwa_A Leucine carboxyl methyl 94.2 3.2 0.00011 51.3 23.4 18 567-584 657-674 (695)
74 1k3i_A Galactose oxidase precu 94.0 8.8 0.0003 46.8 26.7 73 514-588 457-534 (656)
75 3lju_X ARF-GAP with dual PH do 93.8 0.23 7.9E-06 57.3 11.2 95 25-128 273-376 (386)
76 1wi1_A Calcium-dependent activ 93.4 0.32 1.1E-05 47.1 9.5 85 26-124 13-110 (126)
77 2coc_A FYVE, rhogef and PH dom 92.4 0.88 3E-05 43.0 11.0 86 25-123 12-105 (112)
78 4gbf_A Phikz131; 7-bladed beta 92.1 0.18 6E-06 53.8 6.1 83 391-497 310-395 (400)
79 1btn_A Beta-spectrin; signal t 92.0 0.32 1.1E-05 44.4 7.1 34 87-121 72-105 (106)
80 3cxb_B Pleckstrin homology dom 91.9 0.47 1.6E-05 44.5 8.4 81 37-125 21-102 (112)
81 3lju_X ARF-GAP with dual PH do 91.9 0.17 5.7E-06 58.4 6.3 88 26-123 151-245 (386)
82 4a6h_A Phosphatidylinositol 4, 91.8 0.72 2.5E-05 44.2 9.6 96 22-123 8-117 (120)
83 4gbf_A Phikz131; 7-bladed beta 91.8 0.26 8.9E-06 52.5 6.9 68 284-364 310-377 (400)
84 2r09_A Cytohesin-3; autoinhibi 91.8 0.48 1.7E-05 53.7 9.8 86 26-125 218-329 (347)
85 2vrw_B P95VAV, VAV1, proto-onc 91.4 0.055 1.9E-06 62.7 1.6 40 628-667 350-390 (406)
86 1p22_A F-BOX/WD-repeat protein 91.4 22 0.00075 40.1 31.6 229 284-583 135-363 (435)
87 4h8s_A DCC-interacting protein 90.1 0.65 2.2E-05 53.7 9.1 39 88-126 362-400 (407)
88 1dro_A Beta-spectrin; cytoskel 90.1 0.38 1.3E-05 45.7 5.9 39 86-125 82-120 (122)
89 3tca_A Amyloid beta A4 precurs 90.0 0.7 2.4E-05 50.4 8.8 91 26-123 173-275 (291)
90 3a8p_A T-lymphoma invasion and 89.4 1 3.5E-05 49.0 9.4 37 87-124 88-124 (263)
91 2eqb_B RAB guanine nucleotide 89.3 3.1 0.0001 38.2 10.8 75 825-899 13-95 (97)
92 2q13_A DCC-interacting protein 89.2 0.89 3E-05 52.1 9.1 39 87-125 338-376 (385)
93 3u1c_A Tropomyosin alpha-1 cha 88.9 4.3 0.00015 37.7 11.8 65 835-899 34-98 (101)
94 3no0_A DNA gyrase subunit A; D 88.7 30 0.001 37.6 22.3 210 334-584 23-245 (276)
95 1v61_A RAC/CDC42 guanine nucle 88.6 1.1 3.7E-05 43.8 7.9 94 22-126 30-128 (132)
96 2p0d_A RHO GTPase-activating p 88.4 2.1 7.2E-05 41.1 9.9 37 87-124 88-124 (129)
97 2ovr_B FBW7, F-BOX/WD repeat p 87.6 41 0.0014 37.8 30.4 229 284-584 161-390 (445)
98 2fjl_A 1-phosphatidylinositol- 87.6 2.2 7.5E-05 42.5 9.4 37 87-123 110-147 (150)
99 2zwa_A Leucine carboxyl methyl 87.3 19 0.00066 44.3 20.2 18 566-583 598-615 (695)
100 3a2a_A Voltage-gated hydrogen 84.2 2.2 7.6E-05 34.6 6.0 32 840-871 20-51 (58)
101 3pp2_A RHO GTPase-activating p 84.1 3.5 0.00012 39.2 8.8 36 87-123 87-122 (124)
102 3mq7_A Bone marrow stromal ant 82.5 3.3 0.00011 38.9 7.4 29 840-868 73-101 (121)
103 3fx7_A Putative uncharacterize 82.4 6.7 0.00023 35.8 9.2 67 826-902 15-85 (94)
104 4aez_A CDC20, WD repeat-contai 81.7 69 0.0024 35.4 29.1 229 285-584 96-335 (401)
105 3u59_A Tropomyosin beta chain; 81.0 16 0.00054 33.7 11.6 64 836-899 35-98 (101)
106 3sfz_A APAF-1, apoptotic pepti 79.6 1E+02 0.0035 39.8 23.2 58 292-362 1015-1073(1249)
107 2d9z_A Protein kinase C, NU ty 77.9 7.6 0.00026 37.5 8.5 91 26-123 13-123 (129)
108 2yy0_A C-MYC-binding protein; 77.9 3 0.0001 34.1 4.9 31 838-868 19-49 (53)
109 2ovr_B FBW7, F-BOX/WD repeat p 77.7 95 0.0033 34.7 31.2 226 285-584 122-347 (445)
110 3no0_A DNA gyrase subunit A; D 76.8 87 0.003 33.8 20.1 208 292-539 35-252 (276)
111 2uvk_A YJHT; unknown function, 76.6 44 0.0015 36.5 16.0 17 399-416 110-126 (357)
112 2eqb_B RAB guanine nucleotide 76.4 6 0.0002 36.3 6.9 60 837-897 4-64 (97)
113 1gxr_A ESG1, transducin-like e 75.7 82 0.0028 32.9 29.8 241 288-584 7-254 (337)
114 4aez_A CDC20, WD repeat-contai 74.7 1.1E+02 0.0037 33.8 27.7 108 284-417 136-247 (401)
115 1jcd_A Major outer membrane li 74.6 6.5 0.00022 32.0 5.9 40 839-882 5-44 (52)
116 1zbd_B Rabphilin-3A; G protein 74.2 1.7 5.8E-05 42.5 3.0 56 633-694 53-109 (134)
117 3na7_A HP0958; flagellar bioge 73.8 17 0.00057 39.2 11.1 79 826-907 99-177 (256)
118 3vl1_A 26S proteasome regulato 73.4 1.1E+02 0.0038 33.4 27.5 71 505-585 291-365 (420)
119 3hk0_A Growth factor receptor- 73.2 12 0.00042 40.4 9.8 82 35-123 147-239 (256)
120 2jee_A YIIU; FTSZ, septum, coi 72.3 11 0.00037 33.5 7.3 39 827-865 30-68 (81)
121 3i00_A HIP-I, huntingtin-inter 72.3 18 0.00062 34.6 9.5 56 825-884 16-75 (120)
122 4gmv_A RAS-associated and plec 72.1 7 0.00024 42.9 7.6 86 32-123 170-265 (281)
123 2zet_C Melanophilin; complex, 72.1 2 6.8E-05 43.0 3.0 51 634-693 67-118 (153)
124 3ii7_A Kelch-like protein 7; p 71.9 89 0.003 33.2 16.6 17 345-362 48-64 (306)
125 3oja_B Anopheles plasmodium-re 70.1 22 0.00075 42.6 12.3 28 879-906 557-584 (597)
126 3tul_A Cell invasion protein S 69.7 7.8 0.00027 37.8 6.3 69 837-905 26-94 (158)
127 4emc_A Monopolin complex subun 69.7 19 0.00064 36.8 9.4 32 839-870 21-52 (190)
128 3k26_A Polycomb protein EED; W 69.6 1.2E+02 0.004 32.1 26.3 208 283-533 19-260 (366)
129 3hnw_A Uncharacterized protein 69.5 27 0.00093 34.1 10.4 64 837-900 67-130 (138)
130 1q7f_A NHL, brain tumor CG1071 69.2 1.1E+02 0.0038 31.7 23.4 16 516-531 210-225 (286)
131 1k3i_A Galactose oxidase precu 68.7 2E+02 0.007 34.5 23.5 22 566-587 457-478 (656)
132 4gkw_A Spindle assembly abnorm 68.3 24 0.00082 33.7 9.1 39 825-863 47-85 (167)
133 3ol1_A Vimentin; structural ge 68.1 53 0.0018 31.1 11.9 75 827-901 30-115 (119)
134 3uc1_A DNA gyrase subunit A; D 67.7 1.5E+02 0.0053 32.8 23.2 215 340-584 49-278 (327)
135 2dq0_A Seryl-tRNA synthetase; 67.6 15 0.00051 43.1 9.6 37 1056-1092 293-337 (455)
136 2pz1_A RHO guanine nucleotide 66.4 16 0.00055 42.6 9.7 87 33-125 347-441 (466)
137 3nmd_A CGMP dependent protein 66.1 19 0.00064 31.3 7.3 45 826-870 21-65 (72)
138 3ljm_A Coil Ser L9C; de novo d 66.0 7.3 0.00025 27.0 3.7 23 847-869 3-25 (31)
139 1c1g_A Tropomyosin; contractIl 65.7 33 0.0011 35.6 11.2 25 829-853 4-28 (284)
140 1wle_A Seryl-tRNA synthetase; 65.4 24 0.00082 41.8 10.8 37 1056-1092 322-368 (501)
141 2dfk_A Collybistin II; DH doma 65.1 17 0.00058 41.6 9.4 85 33-123 270-362 (402)
142 2gd5_A Charged multivesicular 64.9 28 0.00095 35.4 9.9 77 826-902 9-86 (179)
143 3swk_A Vimentin; cytoskeleton, 64.8 18 0.00062 32.4 7.4 46 827-872 10-62 (86)
144 1wle_A Seryl-tRNA synthetase; 64.5 16 0.00056 43.2 9.2 83 821-903 49-146 (501)
145 4asc_A Kelch repeat and BTB do 64.2 70 0.0024 34.3 13.8 17 345-361 37-53 (315)
146 2p22_A Suppressor protein STP2 64.2 13 0.00043 37.9 7.0 43 824-866 42-84 (174)
147 3mmy_A MRNA export factor; mRN 63.9 1.5E+02 0.0051 31.2 22.3 195 334-585 39-247 (368)
148 3frt_A Charged multivesicular 63.7 27 0.00093 36.8 9.7 80 824-903 7-87 (218)
149 3htk_A Structural maintenance 63.7 25 0.00085 29.0 7.6 48 837-884 4-54 (60)
150 1kz7_A Guanine nucleotide exch 63.6 21 0.0007 40.1 9.5 39 87-125 288-326 (353)
151 3qne_A Seryl-tRNA synthetase, 63.6 21 0.00073 42.0 9.8 37 1056-1092 289-333 (485)
152 3t06_A PDZ-rhogef, RHO guanine 63.5 24 0.00084 40.3 10.4 41 86-126 367-410 (418)
153 2xyi_A Probable histone-bindin 62.8 1.9E+02 0.0067 32.2 24.4 259 285-584 131-409 (430)
154 3ky9_A Proto-oncogene VAV; cal 62.8 13 0.00045 44.8 8.2 95 24-126 410-509 (587)
155 2dq0_A Seryl-tRNA synthetase; 62.7 15 0.00051 43.1 8.3 66 839-904 39-107 (455)
156 2dtc_A RAL guanine nucleotide 62.4 26 0.00088 33.7 8.5 41 86-126 74-114 (126)
157 3zwl_B Eukaryotic translation 62.4 1.6E+02 0.0055 31.0 24.9 119 284-417 76-205 (369)
158 2aq5_A Coronin-1A; WD40 repeat 61.3 1.9E+02 0.0066 31.6 26.8 114 287-417 39-162 (402)
159 2efr_A General control protein 61.1 47 0.0016 33.1 10.3 66 835-900 74-139 (155)
160 3qwm_A Iqsec1, IQ motif and SE 60.9 20 0.00067 35.2 7.4 39 86-124 80-122 (140)
161 1sq9_A Antiviral protein SKI8; 60.4 1.9E+02 0.0064 31.2 26.4 122 283-418 17-157 (397)
162 2ys3_A UNC-112-related protein 60.3 21 0.00072 34.9 7.5 23 98-120 86-108 (137)
163 3mkq_A Coatomer beta'-subunit; 60.0 2.9E+02 0.01 33.3 26.9 231 284-584 15-258 (814)
164 3ol1_A Vimentin; structural ge 59.9 67 0.0023 30.5 10.9 53 835-887 17-69 (119)
165 3lss_A Seryl-tRNA synthetase; 59.7 25 0.00087 41.4 9.5 36 1057-1092 311-356 (484)
166 3iv1_A Tumor susceptibility ge 59.4 75 0.0026 28.0 10.0 68 829-903 9-76 (78)
167 2akf_A Coronin-1A; coiled coil 59.2 17 0.00059 25.7 4.6 27 836-862 4-30 (32)
168 2coa_A Protein kinase C, D2 ty 58.8 38 0.0013 32.5 8.8 89 25-122 12-117 (125)
169 4etp_A Kinesin-like protein KA 58.8 16 0.00056 42.1 7.6 54 836-903 8-61 (403)
170 2v4h_A NF-kappa-B essential mo 58.7 24 0.00083 32.9 7.1 24 846-869 46-72 (110)
171 1ses_A Seryl-tRNA synthetase; 57.8 19 0.00065 41.8 8.0 36 1057-1092 267-312 (421)
172 3oja_B Anopheles plasmodium-re 57.6 8.3 0.00028 46.4 5.2 38 833-870 451-488 (597)
173 1kd8_B GABH BLL, GCN4 acid bas 57.6 19 0.00064 26.8 4.9 33 838-870 1-33 (36)
174 3no2_A Uncharacterized protein 57.4 2E+02 0.0067 30.5 24.7 165 390-591 88-267 (276)
175 3vmx_A Voltage-gated hydrogen 57.3 26 0.00087 27.9 6.0 36 828-870 8-43 (48)
176 2vrw_B P95VAV, VAV1, proto-onc 57.1 24 0.00083 40.3 8.8 39 88-126 299-337 (406)
177 3a7p_A Autophagy protein 16; c 56.9 88 0.003 30.9 11.2 73 834-906 64-147 (152)
178 3jsv_C NF-kappa-B essential mo 56.9 26 0.0009 31.8 6.9 20 877-896 30-49 (94)
179 2v71_A Nuclear distribution pr 56.8 77 0.0026 32.6 11.3 57 830-886 41-104 (189)
180 3ulb_A Target of rapamycin com 56.4 47 0.0016 31.6 8.8 75 37-123 28-113 (121)
181 1go4_E MAD1 (mitotic arrest de 56.3 58 0.002 30.0 9.2 19 885-903 73-91 (100)
182 4ejn_A RAC-alpha serine/threon 56.1 15 0.00052 42.3 6.9 96 21-124 7-108 (446)
183 2dfs_A Myosin-5A; myosin-V, in 55.8 40 0.0014 43.8 11.3 27 839-865 978-1004(1080)
184 3u06_A Protein claret segregat 55.7 24 0.00083 40.7 8.4 57 834-904 6-62 (412)
185 2l3l_A Tubulin-specific chaper 55.4 31 0.0011 32.5 7.5 77 827-905 31-109 (111)
186 4emc_A Monopolin complex subun 55.2 52 0.0018 33.6 9.5 40 823-862 19-58 (190)
187 1ic2_A Tropomyosin alpha chain 55.2 57 0.0019 28.7 8.9 40 838-877 34-73 (81)
188 3lss_A Seryl-tRNA synthetase; 54.9 26 0.00088 41.4 8.5 28 839-866 45-72 (484)
189 2rrf_A Zinc finger FYVE domain 54.9 52 0.0018 31.9 8.9 103 14-123 11-126 (141)
190 3k26_A Polycomb protein EED; W 54.4 2.1E+02 0.0073 30.0 30.5 109 284-417 71-191 (366)
191 2vpj_A Kelch-like protein 12; 54.4 2.1E+02 0.0073 30.0 16.0 17 345-362 55-71 (301)
192 3qne_A Seryl-tRNA synthetase, 54.4 33 0.0011 40.5 9.2 82 823-904 16-109 (485)
193 3odt_A Protein DOA1; ubiquitin 54.2 2E+02 0.0068 29.6 24.9 186 283-532 105-295 (313)
194 3qh9_A Liprin-beta-2; coiled-c 53.8 59 0.002 28.7 8.3 34 829-863 18-51 (81)
195 4a11_B DNA excision repair pro 53.7 2.3E+02 0.008 30.3 30.5 250 282-585 99-365 (408)
196 1gxr_A ESG1, transducin-like e 53.4 2.1E+02 0.0072 29.7 31.8 231 285-584 54-295 (337)
197 1wt6_A Myotonin-protein kinase 53.1 34 0.0012 30.2 6.7 40 831-870 24-70 (81)
198 3uc1_A DNA gyrase subunit A; D 53.0 2.7E+02 0.0092 30.8 23.7 224 287-539 48-285 (327)
199 2ocy_A RAB guanine nucleotide 52.9 83 0.0028 31.3 10.4 49 852-900 79-142 (154)
200 1xcg_A PDZ-rhogef, RHO guanine 52.7 60 0.0021 36.3 11.0 39 87-125 326-367 (368)
201 1ses_A Seryl-tRNA synthetase; 52.1 12 0.00039 43.6 4.9 67 838-904 35-102 (421)
202 3mq7_A Bone marrow stromal ant 52.0 86 0.0029 29.5 9.6 34 854-891 73-106 (121)
203 3odt_A Protein DOA1; ubiquitin 52.0 2.1E+02 0.0073 29.3 31.3 222 291-585 70-296 (313)
204 3ky9_A Proto-oncogene VAV; cal 52.0 4.6 0.00016 48.9 1.6 47 616-667 515-562 (587)
205 2d9w_A Docking protein 2; PH d 51.7 69 0.0024 30.8 9.3 94 21-123 13-120 (127)
206 3sfz_A APAF-1, apoptotic pepti 51.6 4.9E+02 0.017 33.3 25.3 75 506-585 1129-1207(1249)
207 2lg1_A A-kinase anchor protein 51.5 20 0.00067 36.8 6.0 94 21-123 72-171 (185)
208 4asc_A Kelch repeat and BTB do 51.5 2E+02 0.0067 30.7 14.7 17 345-362 91-107 (315)
209 3gre_A Serine/threonine-protei 51.5 2.8E+02 0.0096 30.5 20.5 117 283-417 112-244 (437)
210 1ci6_A Transcription factor AT 50.9 42 0.0014 28.2 6.9 38 833-870 25-62 (63)
211 1dbh_A Protein (human SOS 1); 50.6 22 0.00074 39.8 6.8 37 88-125 314-350 (354)
212 1i84_S Smooth muscle myosin he 50.4 31 0.0011 45.3 9.1 19 885-903 925-943 (1184)
213 2yy0_A C-MYC-binding protein; 50.2 18 0.00061 29.6 4.3 32 824-855 19-50 (53)
214 2wt7_B Transcription factor MA 50.0 30 0.001 31.4 6.1 35 835-869 52-86 (90)
215 3ii7_A Kelch-like protein 7; p 49.9 2.5E+02 0.0086 29.5 18.0 17 345-362 94-110 (306)
216 4h22_A Leucine-rich repeat fli 49.3 1.3E+02 0.0046 27.7 10.3 66 833-905 18-83 (103)
217 4ani_A Protein GRPE; chaperone 49.2 67 0.0023 33.6 9.7 59 835-894 63-121 (213)
218 2uvk_A YJHT; unknown function, 49.2 1.7E+02 0.0056 31.8 13.8 18 344-362 110-127 (357)
219 3trt_A Vimentin; cytoskeleton, 48.9 96 0.0033 26.7 9.3 61 838-900 9-69 (77)
220 2v66_B Nuclear distribution pr 48.3 1.6E+02 0.0055 27.7 11.0 64 835-898 39-102 (111)
221 3v7d_B Cell division control p 47.6 3.3E+02 0.011 30.2 30.9 239 285-585 125-381 (464)
222 1kd8_A GABH AIV, GCN4 acid bas 47.4 24 0.00083 26.2 4.1 33 838-870 1-33 (36)
223 4dzo_A Mitotic spindle assembl 46.7 33 0.0011 32.9 6.3 18 837-854 3-20 (123)
224 3n7n_E Monopolin complex subun 46.7 4.1 0.00014 36.8 0.0 51 833-892 38-94 (95)
225 4a11_B DNA excision repair pro 46.6 3E+02 0.01 29.4 29.3 257 283-584 44-322 (408)
226 2dq3_A Seryl-tRNA synthetase; 46.5 14 0.00048 42.9 4.5 37 1056-1092 272-316 (425)
227 3odw_A RHO guanine nucleotide 46.3 66 0.0023 38.3 10.4 41 86-126 484-526 (536)
228 3v7d_B Cell division control p 46.1 3.4E+02 0.012 30.0 30.2 243 284-585 164-421 (464)
229 1nty_A Triple functional domai 46.0 56 0.0019 35.7 9.1 38 88-125 269-309 (311)
230 3p6a_A RHO guanine nucleotide 45.9 69 0.0023 35.9 10.1 41 85-125 330-372 (377)
231 3cve_A Homer protein homolog 1 45.2 98 0.0033 26.8 8.3 13 887-899 46-58 (72)
232 3viq_B Mating-type switching p 44.4 25 0.00086 31.5 4.7 29 840-868 3-31 (85)
233 2puy_A PHD finger protein 21A; 44.2 20 0.0007 29.6 3.9 53 635-697 5-57 (60)
234 3vkg_A Dynein heavy chain, cyt 43.9 68 0.0023 46.3 11.2 30 846-875 1935-1964(3245)
235 2fiy_A Protein FDHE homolog; F 42.9 8.3 0.00028 42.9 1.7 75 615-698 187-268 (309)
236 3jrp_A Fusion protein of prote 42.7 3.3E+02 0.011 28.7 29.1 241 284-584 13-286 (379)
237 1deb_A APC protein, adenomatou 42.3 1.2E+02 0.0042 24.2 7.6 31 835-865 7-37 (54)
238 2wt7_A Proto-oncogene protein 42.2 33 0.0011 28.8 4.9 32 835-866 27-58 (63)
239 4gga_A P55CDC, cell division c 41.8 3.9E+02 0.013 29.4 30.0 67 284-362 149-217 (420)
240 2vpj_A Kelch-like protein 12; 41.1 3.3E+02 0.011 28.4 17.1 18 344-362 104-121 (301)
241 2rgn_B RHOA/RAC/CDC42 exchange 40.8 69 0.0023 35.8 9.0 39 87-125 278-319 (354)
242 3ml4_A Protein DOK-7; tyrosine 40.8 82 0.0028 33.2 8.7 86 28-124 15-113 (224)
243 1wlq_A Geminin; coiled-coil; 2 40.5 1E+02 0.0035 27.4 7.8 43 823-865 23-65 (83)
244 1gqe_A Release factor 2, RF2; 40.5 1.1E+02 0.0038 34.6 10.3 50 860-909 72-124 (365)
245 1suu_A DNA gyrase subunit A; t 40.1 4E+02 0.014 29.0 24.6 225 287-538 53-288 (312)
246 2dfs_A Myosin-5A; myosin-V, in 40.1 87 0.003 40.7 10.7 10 836-845 958-967 (1080)
247 2ocy_A RAB guanine nucleotide 39.8 1.1E+02 0.0039 30.3 9.1 23 846-868 45-67 (154)
248 2dq3_A Seryl-tRNA synthetase; 39.7 16 0.00054 42.5 3.4 68 837-904 29-106 (425)
249 2xyi_A Probable histone-bindin 39.5 4.3E+02 0.015 29.2 20.0 202 294-532 196-409 (430)
250 3mpx_A FYVE, rhogef and PH dom 39.2 51 0.0017 37.8 7.8 37 88-126 303-339 (434)
251 2zqm_A Prefoldin beta subunit 39.1 60 0.0021 30.1 6.9 33 837-869 12-44 (117)
252 3f6n_A Virion-associated prote 38.4 68 0.0023 30.3 6.7 24 876-899 54-77 (129)
253 4fla_A Regulation of nuclear P 38.1 3E+02 0.01 27.2 11.9 67 835-905 83-149 (152)
254 3jro_A Fusion protein of prote 38.0 6.2E+02 0.021 30.7 26.5 100 294-418 23-132 (753)
255 1suu_A DNA gyrase subunit A; t 37.9 4.3E+02 0.015 28.7 21.9 260 293-585 9-283 (312)
256 1m1j_B Fibrinogen beta chain; 37.9 1.2E+02 0.0042 35.3 10.5 24 825-848 87-110 (464)
257 3hnw_A Uncharacterized protein 37.7 72 0.0025 31.1 7.3 39 832-870 76-114 (138)
258 2aze_B Transcription factor E2 37.7 52 0.0018 30.7 6.0 35 838-872 6-40 (106)
259 2fxo_A Myosin heavy chain, car 37.6 1.8E+02 0.006 27.8 10.0 8 895-902 84-91 (129)
260 3nmd_A CGMP dependent protein 37.5 1.2E+02 0.0042 26.2 7.7 46 840-899 21-66 (72)
261 1jnm_A Proto-oncogene C-JUN; B 37.5 16 0.00055 30.6 2.3 28 837-864 28-55 (62)
262 1txd_A RHO guanine nucleotide 37.3 53 0.0018 37.1 7.4 36 90-125 334-370 (385)
263 3no2_A Uncharacterized protein 37.1 3.9E+02 0.013 28.0 21.0 168 332-539 85-267 (276)
264 3s4r_A Vimentin; alpha-helix, 36.8 2.4E+02 0.0081 25.5 10.5 40 857-903 54-93 (93)
265 4dci_A Uncharacterized protein 36.7 2E+02 0.0068 28.4 10.3 63 841-907 32-110 (150)
266 2woz_A Kelch repeat and BTB do 36.7 2.6E+02 0.0087 29.8 12.6 16 400-416 151-166 (318)
267 4e54_B DNA damage-binding prot 36.5 4.8E+02 0.016 28.9 19.5 27 390-416 251-280 (435)
268 1lwu_C Fibrinogen gamma chain; 36.2 71 0.0024 35.6 7.8 37 832-868 6-49 (323)
269 1hjb_A Ccaat/enhancer binding 36.2 77 0.0026 28.5 6.6 12 895-906 68-79 (87)
270 3vkg_A Dynein heavy chain, cyt 36.1 69 0.0024 46.2 9.4 14 114-127 999-1012(3245)
271 3i00_A HIP-I, huntingtin-inter 35.9 2.9E+02 0.0099 26.2 10.9 70 827-899 11-80 (120)
272 2wt7_A Proto-oncogene protein 35.9 99 0.0034 25.8 6.9 25 839-863 24-48 (63)
273 2zqm_A Prefoldin beta subunit 35.8 81 0.0028 29.2 7.2 44 829-872 68-111 (117)
274 2gd5_A Charged multivesicular 35.7 69 0.0024 32.4 7.2 69 834-903 10-80 (179)
275 1a93_B MAX protein, coiled coi 35.6 47 0.0016 24.6 4.1 28 829-856 5-32 (34)
276 2aq5_A Coronin-1A; WD40 repeat 35.4 4.6E+02 0.016 28.4 29.6 115 283-416 82-205 (402)
277 3ra3_B P2F; coiled coil domain 35.2 35 0.0012 23.2 3.0 25 827-851 3-27 (28)
278 1fxk_A Prefoldin; archaeal pro 35.2 93 0.0032 28.3 7.4 33 837-869 7-39 (107)
279 1jcd_A Major outer membrane li 35.1 1.5E+02 0.005 24.1 7.4 34 835-868 15-48 (52)
280 1z87_A Alpha-1-syntrophin; pro 35.0 47 0.0016 35.9 6.1 40 84-123 222-261 (263)
281 3efg_A Protein SLYX homolog; x 35.0 1.4E+02 0.0048 26.2 7.9 51 842-906 11-61 (78)
282 2adz_A Alpha-1-syntrophin; pro 34.6 47 0.0016 33.9 5.5 40 84-123 137-176 (178)
283 1pgu_A Actin interacting prote 34.1 5.7E+02 0.02 29.1 27.8 56 291-360 308-363 (615)
284 1gd2_E Transcription factor PA 33.9 36 0.0012 29.4 3.9 32 838-869 29-60 (70)
285 3iv1_A Tumor susceptibility ge 33.9 1.2E+02 0.0042 26.6 7.3 45 826-870 27-71 (78)
286 4etp_A Kinesin-like protein KA 33.6 68 0.0023 36.8 7.5 35 835-869 21-55 (403)
287 1fxk_C Protein (prefoldin); ar 33.4 85 0.0029 29.9 7.1 47 828-874 85-131 (133)
288 2xdj_A Uncharacterized protein 33.3 94 0.0032 27.7 6.6 33 838-870 27-59 (83)
289 1ez3_A Syntaxin-1A; three heli 33.1 3E+02 0.01 25.5 11.9 53 849-901 47-109 (127)
290 2e7s_A RAB guanine nucleotide 33.0 88 0.003 30.4 6.9 51 853-903 68-119 (135)
291 3mmy_A MRNA export factor; mRN 32.8 4.4E+02 0.015 27.4 24.3 109 282-416 39-158 (368)
292 1g73_A SMAC/diablo, second mit 32.5 2.1E+02 0.0072 28.4 9.4 65 833-898 74-141 (162)
293 1v5m_A SH2 and PH domain-conta 32.4 1.7E+02 0.0058 28.4 8.6 84 34-125 41-131 (136)
294 1nlw_A MAD protein, MAX dimeri 32.2 45 0.0015 29.4 4.4 25 829-853 52-76 (80)
295 2wvr_A Geminin; DNA replicatio 32.2 1.5E+02 0.0052 30.5 8.7 47 824-870 101-147 (209)
296 3g67_A Methyl-accepting chemot 32.1 3E+02 0.01 28.6 11.5 31 832-862 40-70 (213)
297 1zi0_A DNA gyrase subunit A; b 32.1 5.2E+02 0.018 28.0 24.5 215 340-585 49-277 (307)
298 1few_A Second mitochondria-der 32.1 2.2E+02 0.0074 28.9 9.6 65 833-898 74-141 (184)
299 2woz_A Kelch repeat and BTB do 32.1 2.2E+02 0.0075 30.3 11.1 17 345-361 48-64 (318)
300 1sq9_A Antiviral protein SKI8; 32.0 4.9E+02 0.017 27.7 20.8 115 283-417 122-266 (397)
301 2b5u_A Colicin E3; high resolu 32.0 1.6E+02 0.0055 34.3 9.8 53 846-898 308-360 (551)
302 4dk0_A Putative MACA; alpha-ha 31.8 1.5E+02 0.0051 32.8 9.9 68 837-904 76-153 (369)
303 4e54_B DNA damage-binding prot 31.8 5.6E+02 0.019 28.3 18.8 71 505-584 251-326 (435)
304 3cvf_A Homer-3, homer protein 31.8 1.3E+02 0.0044 26.6 7.1 11 889-899 54-64 (79)
305 1ik9_A DNA repair protein XRCC 31.8 2.3E+02 0.008 29.5 10.5 31 840-870 134-164 (213)
306 2xzr_A Immunoglobulin-binding 31.7 76 0.0026 28.7 5.6 31 838-868 76-106 (114)
307 1t2k_D Cyclic-AMP-dependent tr 31.6 1.1E+02 0.0039 25.2 6.6 28 837-864 28-55 (61)
308 3a7p_A Autophagy protein 16; c 31.6 1.7E+02 0.0057 29.0 8.6 50 834-886 99-148 (152)
309 3he5_A Synzip1; heterodimeric 31.5 87 0.003 23.8 5.0 17 837-853 9-25 (49)
310 1ci6_A Transcription factor AT 31.5 48 0.0016 27.8 4.2 31 838-868 23-53 (63)
311 2dgc_A Protein (GCN4); basic d 31.5 62 0.0021 27.2 4.9 32 838-869 30-61 (63)
312 2qup_A BH1478 protein; structu 31.4 1.9E+02 0.0063 28.4 9.1 85 819-906 25-122 (145)
313 1d7m_A Cortexillin I; coiled-c 31.2 2.3E+02 0.008 25.3 8.6 49 826-874 13-61 (101)
314 2p61_A Hypothetical protein TM 31.0 1.5E+02 0.0052 29.6 8.6 72 836-907 49-132 (162)
315 1m1j_C Fibrinogen gamma chain; 30.9 2.2E+02 0.0076 32.7 11.0 30 826-856 37-66 (409)
316 3htk_A Structural maintenance 30.9 2.1E+02 0.0073 23.2 8.2 31 838-868 26-56 (60)
317 2k16_A Transcription initiatio 30.8 21 0.0007 30.9 1.9 55 635-696 18-72 (75)
318 1fio_A SSO1 protein; four heli 30.8 3.3E+02 0.011 27.3 11.5 50 850-899 47-96 (196)
319 4e61_A Protein BIM1; EB1-like 30.2 3E+02 0.01 25.5 9.6 33 838-870 18-50 (106)
320 2jee_A YIIU; FTSZ, septum, coi 30.0 1.4E+02 0.0049 26.4 7.1 37 827-863 9-45 (81)
321 1r5m_A SIR4-interacting protei 29.9 5.3E+02 0.018 27.4 24.8 190 345-583 218-423 (425)
322 3tnu_B Keratin, type II cytosk 29.6 2.8E+02 0.0096 26.3 10.0 35 837-871 42-76 (129)
323 1naf_A ADP-ribosylation factor 29.5 1.5E+02 0.0052 29.5 8.2 37 827-863 32-78 (158)
324 1gu4_A CAAT/enhancer binding p 29.2 44 0.0015 29.4 3.7 35 832-866 37-71 (78)
325 1l8d_A DNA double-strand break 29.1 1.5E+02 0.005 27.3 7.7 26 837-862 16-41 (112)
326 3bas_A Myosin heavy chain, str 29.0 3.1E+02 0.011 24.4 9.6 13 891-903 74-86 (89)
327 2yql_A PHD finger protein 21A; 28.9 41 0.0014 27.3 3.3 47 635-691 9-55 (56)
328 1fxk_A Prefoldin; archaeal pro 28.7 98 0.0033 28.1 6.3 43 829-871 63-105 (107)
329 3viq_A SWI5-dependent recombin 28.7 2E+02 0.0068 27.4 8.5 24 836-859 5-28 (122)
330 3tnu_A Keratin, type I cytoske 28.7 3E+02 0.01 26.2 10.0 34 837-870 44-77 (131)
331 2fxo_A Myosin heavy chain, car 28.6 3.9E+02 0.013 25.4 11.9 73 827-899 37-123 (129)
332 1hjb_A Ccaat/enhancer binding 28.6 54 0.0018 29.5 4.2 39 830-868 35-73 (87)
333 3sja_C Golgi to ER traffic pro 28.5 1.1E+02 0.0037 26.0 5.8 35 835-869 10-56 (65)
334 3opc_A Uncharacterized protein 28.3 3.7E+02 0.013 26.0 10.9 19 881-899 89-107 (154)
335 1s94_A S-syntaxin; three helix 28.1 3.6E+02 0.012 26.8 11.1 54 849-902 78-141 (180)
336 2v71_A Nuclear distribution pr 28.0 4.5E+02 0.016 26.9 11.6 62 837-898 94-155 (189)
337 1l8d_A DNA double-strand break 27.8 3.5E+02 0.012 24.6 10.5 32 838-869 10-41 (112)
338 3d5a_X RF1, peptide chain rele 27.8 1.2E+02 0.0041 34.2 7.8 66 836-910 34-104 (354)
339 2e7s_A RAB guanine nucleotide 27.8 75 0.0026 30.9 5.4 60 838-898 25-85 (135)
340 3vgz_A Uncharacterized protein 27.6 5.4E+02 0.018 26.8 22.4 17 568-584 317-334 (353)
341 3o0z_A RHO-associated protein 27.5 4.4E+02 0.015 26.5 11.0 12 827-838 13-24 (168)
342 1uii_A Geminin; human, DNA rep 27.5 2.1E+02 0.0071 25.4 7.6 27 837-870 45-71 (83)
343 1lwu_C Fibrinogen gamma chain; 27.4 1.2E+02 0.004 33.8 7.7 32 838-869 5-36 (323)
344 3htk_B Structural maintenance 27.4 2.9E+02 0.0099 23.6 9.6 48 852-899 25-72 (73)
345 3mkq_A Coatomer beta'-subunit; 27.2 8.6E+02 0.029 29.0 25.7 109 284-418 142-259 (814)
346 1gmj_A ATPase inhibitor; coile 27.2 1.5E+02 0.0051 26.4 6.7 24 845-868 40-67 (84)
347 3zvr_A Dynamin-1; hydrolase, D 27.1 1.6E+02 0.0056 36.6 9.7 75 34-119 556-640 (772)
348 1joc_A EEA1, early endosomal a 27.1 92 0.0032 29.7 6.0 27 837-863 17-43 (125)
349 2w6a_A ARF GTPase-activating p 27.0 48 0.0017 27.4 3.2 33 820-852 23-55 (63)
350 3qfl_A MLA10; coiled-coil, (CC 26.9 1.8E+02 0.0062 27.0 7.9 33 829-861 7-42 (115)
351 1yfq_A Cell cycle arrest prote 26.9 5.5E+02 0.019 26.6 25.2 117 284-418 58-179 (342)
352 2fup_A Hypothetical protein PA 26.8 2E+02 0.007 27.7 8.7 75 827-901 17-110 (157)
353 3ghg_A Fibrinogen alpha chain; 26.6 1.1E+02 0.0038 35.9 7.4 29 825-853 51-79 (562)
354 2lf0_A Uncharacterized protein 26.4 48 0.0016 31.3 3.6 21 833-853 5-25 (123)
355 2k48_A Nucleoprotein; viral pr 26.2 2.7E+02 0.0092 25.7 8.3 20 855-874 45-64 (107)
356 1r5m_A SIR4-interacting protei 26.2 6.1E+02 0.021 26.9 27.7 240 284-584 110-360 (425)
357 1jnm_A Proto-oncogene C-JUN; B 26.1 69 0.0024 26.7 4.3 26 839-864 23-48 (62)
358 3sjb_C Golgi to ER traffic pro 26.0 1.3E+02 0.0043 27.4 6.1 36 835-870 27-74 (93)
359 1q7f_A NHL, brain tumor CG1071 25.8 5.4E+02 0.019 26.2 19.4 13 517-529 255-267 (286)
360 1xip_A Nucleoporin NUP159; bet 25.8 6.1E+02 0.021 28.6 13.7 64 285-361 90-153 (388)
361 2xdj_A Uncharacterized protein 25.7 1.2E+02 0.0041 26.9 6.0 34 837-870 19-52 (83)
362 3csx_A Putative uncharacterize 25.7 79 0.0027 28.0 4.6 24 836-859 20-43 (81)
363 3u06_A Protein claret segregat 25.3 1.1E+02 0.0038 35.2 7.3 44 827-870 13-56 (412)
364 3oja_A Leucine-rich immune mol 25.3 3E+02 0.01 31.8 11.2 33 838-870 435-467 (487)
365 3cve_A Homer protein homolog 1 25.1 2E+02 0.0068 24.9 7.0 41 828-868 11-51 (72)
366 1lrz_A FEMA, factor essential 25.0 1.4E+02 0.0047 34.3 8.1 23 831-853 247-269 (426)
367 1pgu_A Actin interacting prote 24.8 8E+02 0.027 27.8 25.5 223 284-583 162-400 (615)
368 1j1j_A Translin; testis/brain 24.5 2.7E+02 0.0094 29.4 9.7 25 882-906 70-94 (240)
369 3ghg_A Fibrinogen alpha chain; 24.5 1.5E+02 0.005 35.0 7.8 49 825-873 111-159 (562)
370 3u59_A Tropomyosin beta chain; 24.4 1.7E+02 0.0057 26.8 7.0 37 833-869 18-54 (101)
371 3fpp_A Macrolide-specific effl 24.4 1.2E+02 0.0042 33.2 7.4 28 838-865 76-103 (341)
372 3a8n_A TIAM-1, T-lymphoma inva 24.3 81 0.0028 34.4 5.6 36 87-123 88-123 (279)
373 1gu4_A CAAT/enhancer binding p 24.2 1.2E+02 0.004 26.7 5.5 16 847-862 45-60 (78)
374 1zvt_A Topoisomerase IV subuni 24.1 3.9E+02 0.013 28.3 11.0 126 287-424 39-169 (256)
375 3m0d_C TNF receptor-associated 23.9 2.4E+02 0.0082 23.7 7.3 34 832-865 21-54 (65)
376 3jro_A Fusion protein of prote 23.9 1E+03 0.035 28.7 23.2 70 283-362 54-131 (753)
377 3zx6_A HAMP, methyl-accepting 23.8 4.6E+02 0.016 28.9 12.0 15 884-898 126-140 (341)
378 2f23_A Anti-cleavage anti-GREA 23.7 61 0.0021 32.1 4.1 55 850-904 15-70 (156)
379 3ra3_A P1C; coiled coil domain 23.6 76 0.0026 21.5 3.1 27 826-852 2-28 (28)
380 3axj_A GM27569P, translin; tra 23.6 2.5E+02 0.0087 29.9 9.3 27 881-907 72-98 (249)
381 3vmx_A Voltage-gated hydrogen 23.5 1.8E+02 0.006 23.3 5.7 20 838-857 4-23 (48)
382 1wp5_A Topoisomerase IV; broke 23.5 7.5E+02 0.026 27.0 23.5 130 286-424 44-180 (323)
383 2xn4_A Kelch-like protein 2; s 23.5 6.4E+02 0.022 26.2 16.2 17 345-362 101-117 (302)
384 1m1j_C Fibrinogen gamma chain; 23.4 4E+02 0.014 30.6 11.3 40 825-864 25-67 (409)
385 1x79_B RAB GTPase binding effe 23.4 2.8E+02 0.0095 26.1 8.2 50 839-898 7-56 (112)
386 1wp5_A Topoisomerase IV; broke 23.3 7.5E+02 0.026 27.0 24.1 223 340-590 46-282 (323)
387 2wg5_A General control protein 23.3 53 0.0018 30.6 3.4 15 839-853 8-22 (109)
388 3vbb_A Seryl-tRNA synthetase, 23.3 1.9E+02 0.0066 34.3 8.9 49 822-870 16-66 (522)
389 3cvf_A Homer-3, homer protein 23.2 2.2E+02 0.0074 25.1 7.0 41 828-868 17-57 (79)
390 1mm2_A MI2-beta; PHD, zinc fin 23.0 56 0.0019 27.1 3.1 50 635-694 9-58 (61)
391 2b9c_A Striated-muscle alpha t 22.7 3.9E+02 0.013 26.2 9.6 66 838-903 52-117 (147)
392 4dnd_A Syntaxin-10, SYN10; str 22.6 3.6E+02 0.012 25.9 9.1 38 866-903 84-128 (130)
393 1zi0_A DNA gyrase subunit A; b 22.6 7.5E+02 0.026 26.7 26.2 223 287-538 48-282 (307)
394 4ery_A WD repeat-containing pr 22.5 6.5E+02 0.022 25.9 25.1 106 284-416 67-178 (312)
395 3mq9_A Bone marrow stromal ant 22.4 3.6E+02 0.012 31.0 11.1 75 825-900 371-456 (471)
396 1m1j_B Fibrinogen beta chain; 22.4 4.2E+02 0.014 30.9 11.3 57 844-902 134-190 (464)
397 1fxk_C Protein (prefoldin); ar 22.4 1.7E+02 0.0058 27.8 6.9 46 823-868 87-132 (133)
398 3w03_C DNA repair protein XRCC 22.2 1.7E+02 0.0059 29.9 7.1 43 827-869 141-183 (184)
399 3tfm_A Myosin X; split PH doma 22.0 71 0.0024 33.4 4.5 32 87-120 194-225 (228)
400 1xwh_A Autoimmune regulator; P 22.0 76 0.0026 26.6 3.8 49 633-691 6-54 (66)
401 3mov_A Lamin-B1; LMNB1, B-type 21.8 3.1E+02 0.011 24.9 8.1 47 824-870 23-69 (95)
402 1nkp_B MAX protein, MYC proto- 21.7 98 0.0033 27.2 4.6 26 837-862 53-78 (83)
403 1dkg_A Nucleotide exchange fac 21.7 2.6E+02 0.0088 28.8 8.5 31 839-869 43-77 (197)
404 1nkp_B MAX protein, MYC proto- 21.5 1.2E+02 0.004 26.6 5.1 31 839-869 48-78 (83)
405 3gre_A Serine/threonine-protei 21.4 8.1E+02 0.028 26.6 19.1 60 292-362 182-244 (437)
406 2w6b_A RHO guanine nucleotide 20.9 3.4E+02 0.012 22.1 7.6 17 836-852 8-24 (56)
407 1wg2_A Zinc finger (AN1-like) 20.9 41 0.0014 28.5 1.8 28 635-665 15-42 (64)
408 3oja_A Leucine-rich immune mol 20.9 3.9E+02 0.013 30.8 11.0 46 850-902 440-485 (487)
409 2e6r_A Jumonji/ARID domain-con 20.8 78 0.0027 28.5 3.9 51 636-693 17-67 (92)
410 3viq_A SWI5-dependent recombin 20.7 3.2E+02 0.011 26.0 8.3 62 829-899 5-70 (122)
411 4ggc_A P55CDC, cell division c 20.6 6.8E+02 0.023 25.4 27.8 67 284-362 69-137 (318)
412 2w83_C C-JUN-amino-terminal ki 20.6 88 0.003 27.3 3.8 33 838-870 37-69 (77)
413 1foe_A T-lymphoma invasion and 20.6 1.5E+02 0.0051 33.2 7.1 37 89-125 325-367 (377)
414 1deb_A APC protein, adenomatou 20.4 2.3E+02 0.0078 22.7 5.8 25 827-851 13-37 (54)
415 2odv_A Plectin 1, HD1; plakin 20.4 2.7E+02 0.0093 29.4 8.6 79 828-907 108-195 (235)
416 3twe_A Alpha4H; unknown functi 20.4 1.4E+02 0.0047 20.2 3.8 20 835-854 5-24 (27)
417 2z2n_A Virginiamycin B lyase; 20.4 6.7E+02 0.023 25.2 22.1 16 516-531 186-201 (299)
418 2bzb_A Conserved domain protei 20.3 1.7E+02 0.0058 24.5 5.5 40 834-873 4-43 (62)
419 4ani_A Protein GRPE; chaperone 20.2 3.9E+02 0.013 27.9 9.5 79 827-905 69-158 (213)
420 1wfh_A Zinc finger (AN1-like) 20.1 43 0.0015 28.4 1.8 29 634-665 14-42 (64)
421 3ter_A Mammalian stromal inter 20.1 2.1E+02 0.0072 27.7 6.8 19 837-855 5-23 (136)
422 4aj5_K Spindle and kinetochore 20.0 1.9E+02 0.0066 27.5 6.3 37 835-871 47-83 (123)
423 3i2n_A WD repeat-containing pr 20.0 7.4E+02 0.025 25.6 22.7 206 284-529 113-349 (357)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-65 Score=598.67 Aligned_cols=372 Identities=34% Similarity=0.608 Sum_probs=333.1
Q ss_pred cccccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCceEEEEEcCCcEEEEeCCC
Q 001236 232 APDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEES 311 (1117)
Q Consensus 232 ~~~~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~ 311 (1117)
.+.+++++|.||+||.| ..||||.+. ..+...|.+++.....+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~l~~~G~v~~wG~n-~~GqLG~~~---------~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~ 81 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHN-HRGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGA 81 (389)
T ss_dssp ---------CEEEEEEC-TTSTTSSCS---------CSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred cceeECCCCeEEEeeCC-CCccCCCCc---------CccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCC
Confidence 35789999999999999 689999875 24556788887777789999999999999999999999999999
Q ss_pred CCccCCCCCCceeccEEeccCCCCCe--EEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCC
Q 001236 312 GGRLGHGVGKDIVQPHLLESLTMTSV--DFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEG 389 (1117)
Q Consensus 312 ~GQLG~g~~~~~~~P~~V~~l~~~~I--~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~ 389 (1117)
+||||++.......|.++..+....| ++|+||.+|+++|+++|+||+||.| .+||||++.......|.+|.. +.+
T Consensus 82 ~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~~ 158 (389)
T 3kci_A 82 GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LRG 158 (389)
T ss_dssp GGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GTT
T ss_pred CCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC--CCCcCCCCCCccCcCCeEecc-cCC
Confidence 99999999989999999998876654 6788999999999999999999999 789999999988889999874 567
Q ss_pred CcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCC--ceEEEEEEeeeccccc
Q 001236 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGV--WHTAAVVEVIVTQSSA 467 (1117)
Q Consensus 390 ~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~--~Ht~aL~e~~~~~~~~ 467 (1117)
.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|
T Consensus 159 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l---------- 228 (389)
T 3kci_A 159 IEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL---------- 228 (389)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE----------
T ss_pred CeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEE----------
Confidence 79999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred ccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-Cc
Q 001236 468 SVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG-KL 546 (1117)
Q Consensus 468 ~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~-~~ 546 (1117)
+.+|+||+||.|.+||||.++......|+.|..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... ..
T Consensus 229 -~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 307 (389)
T 3kci_A 229 -TDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR 307 (389)
T ss_dssp -ETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred -ccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccC
Confidence 5599999999999999999999889999999998888999999999999999999999999999999999986443 45
Q ss_pred ceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEEeccccCceEEEeecCCCcceeEEe
Q 001236 547 PCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALKDRHVKYIACGSNYSAAICL 626 (1117)
Q Consensus 547 P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~VacG~~hT~aL~~ 626 (1117)
|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|+.+.+.+|.+|+||.+||+||+.
T Consensus 308 P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~ 386 (389)
T 3kci_A 308 PRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWST 386 (389)
T ss_dssp EEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEEEECC
T ss_pred CeEecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEEEEec
Confidence 776664 5678899999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ee
Q 001236 627 HK 628 (1117)
Q Consensus 627 ~k 628 (1117)
.+
T Consensus 387 ~~ 388 (389)
T 3kci_A 387 SK 388 (389)
T ss_dssp --
T ss_pred CC
Confidence 53
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.2e-62 Score=574.34 Aligned_cols=353 Identities=34% Similarity=0.597 Sum_probs=323.5
Q ss_pred CCcccccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCceEEEEEcCC-cEEEEe
Q 001236 230 GSAPDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQG-EVFTWG 308 (1117)
Q Consensus 230 Gs~~~~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G~~Hs~~LT~dG-~VyswG 308 (1117)
+....+++.+|.||+||.| ..||||.|.. .+...|.++......+|++|+||..|+++|+++| +||+||
T Consensus 25 ~~hs~al~~~g~v~~wG~n-~~GqLG~g~~---------~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 25 ASHSVALLSGDIVCSWGRG-EDGQLGHGDA---------EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp SSEEEEEETTTEEEEEECC-TTSTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEeCCEEEEEeCC-CCCCCCCCCc---------ccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 3344689999999999998 6899999873 3346677777777789999999999999999986 999999
Q ss_pred CCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCC
Q 001236 309 EESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLE 388 (1117)
Q Consensus 309 ~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~ 388 (1117)
.|.+||||++...+...|.++..+.+.+|++|+||.+|+++|+++|+||+||.| .+||||.+.......|.++.. +.
T Consensus 95 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-~~ 171 (406)
T 4d9s_A 95 WGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN--QNGQLGLGDTEDSLVPQKIQA-FE 171 (406)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC--TTSTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC--CCccCCCCCCCCcccceEecc-cC
Confidence 999999999999999999999999889999999999999999999999999999 789999999988889999874 55
Q ss_pred CCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccc
Q 001236 389 GLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSAS 468 (1117)
Q Consensus 389 ~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~ 468 (1117)
+.+|++|+||.+|+++|+++|+||+||.|.+||||+++......|.++..+.+.+|++|+||.+|+++|
T Consensus 172 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l----------- 240 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV----------- 240 (406)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEE-----------
T ss_pred CCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEE-----------
Confidence 778999999999999999999999999999999999999889999999988888999999999999999
Q ss_pred cCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-Ccc
Q 001236 469 VSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG-KLP 547 (1117)
Q Consensus 469 t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~-~~P 547 (1117)
+.+|+||+||.|.+||||+++......|+.+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.... ..|
T Consensus 241 ~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 320 (406)
T 4d9s_A 241 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 320 (406)
T ss_dssp ETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred cCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence 5699999999999999999999999999999999888999999999999999999999999999999999886543 356
Q ss_pred eeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEEecccc
Q 001236 548 CLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEALK 607 (1117)
Q Consensus 548 ~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~V~~l~ 607 (1117)
..+.. +...+|++|+||.+|+++|+++|+||+||.|.+||||+|+..++..|++|+.+.
T Consensus 321 ~~v~~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 321 VQVRF-PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp EEECC-GGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred EEEec-cCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence 66653 445789999999999999999999999999999999999999999999998765
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.1e-61 Score=566.79 Aligned_cols=367 Identities=25% Similarity=0.424 Sum_probs=315.2
Q ss_pred ccccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCC
Q 001236 233 PDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESG 312 (1117)
Q Consensus 233 ~~~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~ 312 (1117)
..+++.+|+||+||.| ..|+||.|... .....|..+.. ..+|++|+||..|+++|+++|+||+||.|.+
T Consensus 20 ~~~l~~~g~v~~wG~n-~~GqLG~g~~~--------~~~~~P~~v~~--~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~ 88 (413)
T 1a12_A 20 RSHSTEPGLVLTLGQG-DVGQLGLGENV--------MERKKPALVSI--PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDE 88 (413)
T ss_dssp TTCCCCCBEEEEEEEC-TTSTTCSCTTC--------CEEEEEEEECC--SSCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred ceeecCCCcEEEEECC-CCCcCCCCCCc--------cccccceEccC--CCCeEEEEeCCCeEEEEcCCCCEEEEECCCC
Confidence 3578999999999998 68999999731 12345665553 4789999999999999999999999999999
Q ss_pred CccCCCCCC--ceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcce-eeeeeecCCCCC
Q 001236 313 GRLGHGVGK--DIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSH-WIPKRISGPLEG 389 (1117)
Q Consensus 313 GQLG~g~~~--~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~-~~P~~V~~~l~~ 389 (1117)
||||++... ....|..|.. ..+|++|+||.+|+++|+++|+||+||.+.+.+||||.+..... ..|.+|. ..
T Consensus 89 GqLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~---~~ 163 (413)
T 1a12_A 89 GALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQ---LD 163 (413)
T ss_dssp STTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEEC---CS
T ss_pred CCCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEec---CC
Confidence 999998763 4668888853 34899999999999999999999999982227899999876543 4588773 35
Q ss_pred CcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCC-----------Ccccceeeccc-----ccceEEEEeeCCce
Q 001236 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRK-----------NVSYPREVESL-----SGLRTIAVACGVWH 453 (1117)
Q Consensus 390 ~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~-----------~~~~P~~V~~l-----~~~kI~~VacG~~H 453 (1117)
.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.+... ...+|++|+||.+|
T Consensus 164 ~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~h 243 (413)
T 1a12_A 164 VPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYF 243 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTE
T ss_pred CCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCE
Confidence 689999999999999999999999999999999997532 23567666543 45689999999999
Q ss_pred EEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCC--CCEEEEEecCcEEEEEecCCeEEEEeC
Q 001236 454 TAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALID--YNFHKVACGHSLTVGLTTSGHVFTMGS 531 (1117)
Q Consensus 454 t~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~htlaLT~dG~Vy~wGs 531 (1117)
+++| +.+|+||+||.|.+||||+++......|+.|..+.+ .+|++|+||.+|+++|+++|+||+||.
T Consensus 244 s~al-----------t~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~ 312 (413)
T 1a12_A 244 TFAI-----------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 312 (413)
T ss_dssp EEEE-----------ETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EEEE-----------eCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeC
Confidence 9999 569999999999999999999988899999988876 679999999999999999999999999
Q ss_pred CCCCCCCCCCC--CCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEEecc--cc
Q 001236 532 TVYGQLGNPNA--DGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEA--LK 607 (1117)
Q Consensus 532 N~~GQLG~~~~--~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~V~~--l~ 607 (1117)
|.+||||.+.. ....|..+... ..|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|.. +.
T Consensus 313 n~~GqLG~g~~~~~~~~P~~v~~l---~~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~ 389 (413)
T 1a12_A 313 AEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLE 389 (413)
T ss_dssp CGGGTTCSCTTCCCEEEEEECCSS---SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTT
T ss_pred CCCCccCCCCCCccccCCEEeccc---CceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccccC
Confidence 99999998743 33457666542 3899999999999999999999999999999999999999999999985 57
Q ss_pred CceEEEeecCCCcceeEEeeec
Q 001236 608 DRHVKYIACGSNYSAAICLHKW 629 (1117)
Q Consensus 608 ~~~V~~VacG~~hT~aL~~~kw 629 (1117)
+.+|++|+||.+||++|+.++-
T Consensus 390 ~~~v~~v~~G~~ht~~l~~~g~ 411 (413)
T 1a12_A 390 NRVVLSVSSGGQHTVLLVKDKE 411 (413)
T ss_dssp TEEEEEEEECSSEEEEEEEECS
T ss_pred CCeEEEEeeCCCcEEEEEecCC
Confidence 7899999999999999997643
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.3e-61 Score=564.02 Aligned_cols=365 Identities=23% Similarity=0.389 Sum_probs=314.8
Q ss_pred cccccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCceEEEEEcCCcEEEEeCCC
Q 001236 232 APDDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEES 311 (1117)
Q Consensus 232 ~~~~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~ 311 (1117)
...+++.+|+||+||.| ..||||.|.+. .....|.+++.. .+|++|+||..|+++|+++|+||+||.|.
T Consensus 35 ~~~~l~~~G~v~~wG~n-~~GqLG~g~~~--------~~~~~p~~v~~l--~~v~~va~G~~h~~~l~~~G~v~~wG~n~ 103 (423)
T 3mvd_K 35 LPKRRTVLGNVLVCGNG-DVGQLGLGEDI--------LERKRLSPVAGI--PDAVDISAGGMHNLVLTKSGDIYSFGCND 103 (423)
T ss_dssp CCCCCCCCEEEEEEEEC-TTSTTCSCSSC--------CEEEEEEECCSC--SSEEEEEECSSEEEEEETTSCEEEEECCS
T ss_pred cceeecCCCcEEEEeCC-CCCCCCCCCCC--------ccCcCCeEccCC--CCceEEeeCCCeEEEEeCCCeEEEeECCC
Confidence 44689999999999998 68999998631 233456655543 46899999999999999999999999999
Q ss_pred CCccCCCCCCc--eeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCC
Q 001236 312 GGRLGHGVGKD--IVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEG 389 (1117)
Q Consensus 312 ~GQLG~g~~~~--~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~ 389 (1117)
+||||++...+ ...|..|... .+|++|+||.+|+++|+++|+||+||.+.+.+||||.+.......|.++. .+
T Consensus 104 ~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~---~~ 178 (423)
T 3mvd_K 104 EGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM---EG 178 (423)
T ss_dssp SSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS---TT
T ss_pred CcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec---CC
Confidence 99999997654 6788888743 58999999999999999999999999822278999999888877787763 46
Q ss_pred CcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCC-----------CcccceeecccccceEEEEeeCCceEEEEE
Q 001236 390 LQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRK-----------NVSYPREVESLSGLRTIAVACGVWHTAAVV 458 (1117)
Q Consensus 390 ~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~-----------~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~ 458 (1117)
.+|++|+||.+|+++|+++|+||+||.|.+||||++... ....|..+..+...+|++|+||.+|++++.
T Consensus 179 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~ 258 (423)
T 3mvd_K 179 TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE 258 (423)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEE
T ss_pred CcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEE
Confidence 789999999999999999999999999999999998642 456788888877889999999999999984
Q ss_pred EeeecccccccCCceEEEecCCCCCCCCCCCCCC--cccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCC
Q 001236 459 EVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP--RLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQ 536 (1117)
Q Consensus 459 e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~--~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQ 536 (1117)
+.+|.||+||.|.+||||.+.... ...|+.+. ..+|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 259 ----------~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~Gq 325 (423)
T 3mvd_K 259 ----------SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGR 325 (423)
T ss_dssp ----------TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGT
T ss_pred ----------CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCC
Confidence 469999999999999999965543 34565554 358999999999999999999999999999999
Q ss_pred CCCCCCCCC--cceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEEecc--ccCceEE
Q 001236 537 LGNPNADGK--LPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPALVEA--LKDRHVK 612 (1117)
Q Consensus 537 LG~~~~~~~--~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~V~~--l~~~~V~ 612 (1117)
||.+..... .|..+.. +.. +|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...|++|.. +.+.+|.
T Consensus 326 LG~g~~~~~~~~p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~ 403 (423)
T 3mvd_K 326 LGLGDVKDVVEKPTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHML 403 (423)
T ss_dssp TCSSSCCSCEEEEEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEE
T ss_pred CCCCCccccccCceEecc-CCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEE
Confidence 999876543 4666553 333 899999999999999999999999999999999999999999999985 6788999
Q ss_pred EeecCCCcceeEEee
Q 001236 613 YIACGSNYSAAICLH 627 (1117)
Q Consensus 613 ~VacG~~hT~aL~~~ 627 (1117)
+|+||.+||++|+.+
T Consensus 404 ~va~G~~ht~~l~~~ 418 (423)
T 3mvd_K 404 LASGGGQHAIFLVKA 418 (423)
T ss_dssp EEEECSSEEEEEEEC
T ss_pred EEEECCCcEEEEEcc
Confidence 999999999999865
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-61 Score=576.47 Aligned_cols=369 Identities=21% Similarity=0.362 Sum_probs=311.4
Q ss_pred cccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccC--CCCCEEEEEecCceEEEEEcCCcEEEEeCCC
Q 001236 234 DDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESN--VVLDVHHIACGVRHAALVTRQGEVFTWGEES 311 (1117)
Q Consensus 234 ~~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~--~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~ 311 (1117)
..+..+|+||+||.| ..|+||.|... ...+...|..++.. ...+|++|+||..|+++|+++|+||+||.|.
T Consensus 23 ~~~~~~g~v~~wG~n-~~GqLG~G~~~------~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~ 95 (473)
T 3of7_A 23 YLSVQPLDIFCWGTG-SMCELGLGPLA------KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCND 95 (473)
T ss_dssp HCCSSCCEEEEEEEC-TTSTTCSCSCG------GGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccCCCCccEEEEcCC-CCCccCCCCCc------ccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCC
Confidence 356788999999998 68999999731 12344555555443 4568999999999999999999999999999
Q ss_pred CCccCCCCCCc-----------------------eeccEEecc--C----CCCCeEEEEecCCeEEEEEcCCcEEEEcCC
Q 001236 312 GGRLGHGVGKD-----------------------IVQPHLLES--L----TMTSVDFVTCGEFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 312 ~GQLG~g~~~~-----------------------~~~P~~V~~--l----~~~~I~~Va~G~~hs~aLT~dG~VysWG~n 362 (1117)
+||||++.... ...|..|.. + .+.+|++|+||.+|+++|+++|+||+||.|
T Consensus 96 ~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n 175 (473)
T 3of7_A 96 VGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTF 175 (473)
T ss_dssp TSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCC
Confidence 99999987654 567888875 5 368999999999999999999999999985
Q ss_pred CCCCCccCCCCC--cceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCC----cccceee
Q 001236 363 THNAGLLGHGTD--VSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKN----VSYPREV 436 (1117)
Q Consensus 363 ~~~~GqLG~g~~--~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~----~~~P~~V 436 (1117)
.+..||||.+.. .....|.+|.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||++.... ...|..+
T Consensus 176 ~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~ 254 (473)
T 3of7_A 176 RCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF 254 (473)
T ss_dssp EETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC
T ss_pred cCCCCccCCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceec
Confidence 447899998544 35677888874 4567899999999999999999999999999999999986543 4456666
Q ss_pred cccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCC----CcccceeecccCCCCEEEEEe
Q 001236 437 ESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE----PRLKPTCVPALIDYNFHKVAC 512 (1117)
Q Consensus 437 ~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~----~~~~P~~V~~l~~~~I~~Ia~ 512 (1117)
.. .+|++|+||.+|++|| +.+|+||+||.|.+||||++... ....|+.|..+.+.+|++|+|
T Consensus 255 ~~---~~v~~Ia~G~~hs~al-----------t~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~ 320 (473)
T 3of7_A 255 GL---RHVKYIASGENHCFAL-----------TKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAA 320 (473)
T ss_dssp SC---CSEEEEEECSSEEEEE-----------ETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEE
T ss_pred CC---cceEEEecCCCeEEEE-----------ecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEe
Confidence 43 4799999999999999 55999999999999999998764 346799998888889999999
Q ss_pred cCcEEEEEecCCeEEEEeCCCCCCCCCCCCC-----------C----CcceeeecccCCCCeEEEEeCCCcceeeecCCe
Q 001236 513 GHSLTVGLTTSGHVFTMGSTVYGQLGNPNAD-----------G----KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNE 577 (1117)
Q Consensus 513 G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~-----------~----~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~ 577 (1117)
|.+|+++|+++|+||+||.|.+||||.+... . ..|..+.. ..+|++|+||.+|+++|+++|+
T Consensus 321 G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~G~ 397 (473)
T 3of7_A 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQNGI 397 (473)
T ss_dssp CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETTSC
T ss_pred CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC---CCceEEEEeCCCeEEEEeCCCc
Confidence 9999999999999999999999999986421 0 12333321 1289999999999999999999
Q ss_pred EEEEeCCCCCCCCCCC-CCCCcccEEec--cccCceEEEeecCCCcceeEEee
Q 001236 578 VYTWGKGANGRLGHGD-VEDRKTPALVE--ALKDRHVKYIACGSNYSAAICLH 627 (1117)
Q Consensus 578 Vy~WG~n~~GQLG~G~-~~~~~~Pt~V~--~l~~~~V~~VacG~~hT~aL~~~ 627 (1117)
||+||.|.+||||+|+ ..+...|++|+ .+.+.+|++|+||..||++|..+
T Consensus 398 vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 398 AYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp EEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 9999999999999999 78889999998 56778999999999999999864
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.5e-60 Score=554.71 Aligned_cols=349 Identities=32% Similarity=0.578 Sum_probs=320.7
Q ss_pred CCCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCC-cEEEEc
Q 001236 282 VLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAG-ELYTWG 360 (1117)
Q Consensus 282 ~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG-~VysWG 360 (1117)
..+|++|+||..|+++|+++|+||+||.|.+||||++...+...|..+..+.+.+|++|+||.+|+++|+++| +||+||
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG 94 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG 94 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence 3589999999999999999999999999999999999999999999999998889999999999999999986 999999
Q ss_pred CCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccc
Q 001236 361 DGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLS 440 (1117)
Q Consensus 361 ~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~ 440 (1117)
.| .+||||++.......|.++.. +.+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+++..+.
T Consensus 95 ~n--~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 171 (406)
T 4d9s_A 95 WG--DFGRLGHGNSSDLFTPLPIKA-LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE 171 (406)
T ss_dssp CC--GGGTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred CC--CCcCCCCCCCCccccceEecc-cCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence 99 789999999888888988874 567789999999999999999999999999999999999999899999999999
Q ss_pred cceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEE
Q 001236 441 GLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGL 520 (1117)
Q Consensus 441 ~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaL 520 (1117)
+.+|++|+||.+|+++| +.+|+||+||.|.+||||+++......|..+..+...+|++|+||.+|+++|
T Consensus 172 ~~~i~~va~G~~hs~al-----------t~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l 240 (406)
T 4d9s_A 172 GIRIKMVAAGAEHTAAV-----------TEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISV 240 (406)
T ss_dssp TCCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEE
T ss_pred CCcEEEEecCCCeEEEE-----------eCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEE
Confidence 89999999999999999 4599999999999999999999999999999988888999999999999999
Q ss_pred ecCCeEEEEeCCCCCCCCCCCCC-CCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcc
Q 001236 521 TTSGHVFTMGSTVYGQLGNPNAD-GKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKT 599 (1117)
Q Consensus 521 T~dG~Vy~wGsN~~GQLG~~~~~-~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~ 599 (1117)
+++|+||+||.|.+||||.+... ...|..+.. +.+.+|++|+||.+|+++|+++|+||+||.|.+||||+|+..+...
T Consensus 241 ~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 319 (406)
T 4d9s_A 241 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS 319 (406)
T ss_dssp ETTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEE
T ss_pred cCCCCEEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCcc
Confidence 99999999999999999998643 345666664 5677899999999999999999999999999999999999999999
Q ss_pred cEEeccccCceEEEeecCCCcceeEEeeecccchhhcccccccccccccccccccccCcc
Q 001236 600 PALVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGL 659 (1117)
Q Consensus 600 Pt~V~~l~~~~V~~VacG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~ 659 (1117)
|++|..+.+.+|++|+||.+|++||+.+ +..|.|++..+.+.+.|.
T Consensus 320 p~~v~~~~~~~v~~va~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 320 PVQVRFPDDQKVVQVSCGWRHTLAVTER--------------NNVFAWGRGTNGQLGIGE 365 (406)
T ss_dssp EEEECCGGGCCEEEEEECSSEEEEEETT--------------SCEEEEECCTTSTTCSSS
T ss_pred CEEEeccCCCcEEEEEeCCCeEEEEeCC--------------CCEEEecCCCCCccCCCC
Confidence 9999988888999999999999999743 556777776666555554
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.4e-57 Score=525.01 Aligned_cols=344 Identities=33% Similarity=0.561 Sum_probs=296.2
Q ss_pred EEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCC
Q 001236 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNA 366 (1117)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~ 366 (1117)
++..-..+.++|+.+|+||+||.|.+||||.+.......|.++..+...+|++|+||.+|+++|+++|+||+||.| ..
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n--~~ 82 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG--AG 82 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC--GG
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECC--CC
Confidence 3445567788999999999999999999999988899999999988888999999999999999999999999999 78
Q ss_pred CccCCCCCcceeeeeeecCCCC-CCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEE
Q 001236 367 GLLGHGTDVSHWIPKRISGPLE-GLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTI 445 (1117)
Q Consensus 367 GqLG~g~~~~~~~P~~V~~~l~-~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~ 445 (1117)
||||.+.......|..+..+.. ..++++|+||..|+++|+++|+||+||.|.+||||+++......|+.|..+.+.+|+
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~ 162 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVV 162 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEE
Confidence 9999999888888998874322 335689999999999999999999999999999999999889999999999988999
Q ss_pred EEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEEecC
Q 001236 446 AVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGH--SLTVGLTTS 523 (1117)
Q Consensus 446 ~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~htlaLT~d 523 (1117)
+|+||..|+++| +.+|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|+++
T Consensus 163 ~va~G~~hs~al-----------t~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~ 231 (389)
T 3kci_A 163 DVAAGGAHSACV-----------TAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD 231 (389)
T ss_dssp EEEECSSEEEEE-----------ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETT
T ss_pred EEEeCcCeEEEE-----------eCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccC
Confidence 999999999999 5599999999999999999999999999999999889999999994 899999999
Q ss_pred CeEEEEeCCCCCCCCCCCCCC-CcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEE
Q 001236 524 GHVFTMGSTVYGQLGNPNADG-KLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPAL 602 (1117)
Q Consensus 524 G~Vy~wGsN~~GQLG~~~~~~-~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~ 602 (1117)
|+||+||.|.+||||.+.... ..|..+.. +.+..|++|+||.+|+++|+++|+||+||.|.+||||+|+......|++
T Consensus 232 G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~ 310 (389)
T 3kci_A 232 DTVWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ 310 (389)
T ss_dssp TEEEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCCCccccEEecc-cCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeE
Confidence 999999999999999986443 45666654 5667899999999999999999999999999999999999999999999
Q ss_pred eccccCceEEEeecCCCcceeEEeeecccchhhcccccccccccccccccccccCc
Q 001236 603 VEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCG 658 (1117)
Q Consensus 603 V~~l~~~~V~~VacG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG 658 (1117)
|+.+.+.+|++|+||.+|++||+.+ +..|.|+...+.+.+.|
T Consensus 311 v~~l~~~~v~~ia~G~~h~~al~~~--------------G~v~~wG~n~~GqLG~g 352 (389)
T 3kci_A 311 VQGLQGKKVIAIATGSLHCVCCTED--------------GEVYTWGDNDEGQLGDG 352 (389)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETT--------------CCEEEEECCTTSTTCSS
T ss_pred eccCCCCCEEEEEeccCeEEEECCC--------------CCEEEeeCCCCCcCCCC
Confidence 9999999999999999999999754 34555655555544443
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=8.4e-55 Score=511.92 Aligned_cols=340 Identities=22% Similarity=0.355 Sum_probs=287.3
Q ss_pred CCCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCC-CceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEc
Q 001236 282 VLDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVG-KDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWG 360 (1117)
Q Consensus 282 ~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~-~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG 360 (1117)
..++++|+||..|+++|+++|+||+||.|.+||||++.. .....|..|..+ .+|++|+||.+|+++|+++|+||+||
T Consensus 23 ~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l--~~v~~va~G~~h~~~l~~~G~v~~wG 100 (423)
T 3mvd_K 23 KAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGI--PDAVDISAGGMHNLVLTKSGDIYSFG 100 (423)
T ss_dssp ------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSC--SSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred cceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCC--CCceEEeeCCCeEEEEeCCCeEEEeE
Confidence 356778999999999999999999999999999999975 456789888876 46999999999999999999999999
Q ss_pred CCCCCCCccCCCCCcc--eeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeC--CCCCCcCCCCCCCcccceee
Q 001236 361 DGTHNAGLLGHGTDVS--HWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGD--GTFGVLGHGDRKNVSYPREV 436 (1117)
Q Consensus 361 ~n~~~~GqLG~g~~~~--~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~--N~~GQLG~g~~~~~~~P~~V 436 (1117)
.| .+||||++.... ...|.+|.. ..+|++|+||..|+++|+++|+||+||. |.+||||++.......|.++
T Consensus 101 ~n--~~GqLG~~~~~~~~~~~P~~v~~---~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~ 175 (423)
T 3mvd_K 101 CN--DEGALGRDTSEDGSESKPDLIDL---PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL 175 (423)
T ss_dssp CC--SSSTTCSCCCSTTSSSSCEECCC---SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES
T ss_pred CC--CCcCCCCCCcCCccccCCeEEcC---CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe
Confidence 99 789999987654 567887763 2379999999999999999999999999 99999999987776666554
Q ss_pred cccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCC-----------CCcccceeecccCCC
Q 001236 437 ESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDK-----------EPRLKPTCVPALIDY 505 (1117)
Q Consensus 437 ~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~-----------~~~~~P~~V~~l~~~ 505 (1117)
+.+.+|++|+||.+|+++| +.+|+||+||.|.+||||++.. .....|..+..+...
T Consensus 176 --~~~~~i~~va~G~~hs~al-----------t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~ 242 (423)
T 3mvd_K 176 --MEGTVCCSIASGADHLVIL-----------TTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK 242 (423)
T ss_dssp --STTCCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCC
T ss_pred --cCCCcEEEEecCCCeEEEE-----------ecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCc
Confidence 5667899999999999999 5699999999999999999864 345689999887788
Q ss_pred CEEEEEecCcEEEEE-ecCCeEEEEeCCCCCCCCCCCC-CCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeC
Q 001236 506 NFHKVACGHSLTVGL-TTSGHVFTMGSTVYGQLGNPNA-DGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGK 583 (1117)
Q Consensus 506 ~I~~Ia~G~~htlaL-T~dG~Vy~wGsN~~GQLG~~~~-~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~ 583 (1117)
+|++|+||.+|++++ +.+|+||+||.|.+||||.+.. ....+.++.. ....|++|+||.+|+++|+++|+||+||.
T Consensus 243 ~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~--~~~~v~~ia~G~~ht~alt~~G~v~~wG~ 320 (423)
T 3mvd_K 243 PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT--ELKDIRHIAGGQHHTVILTTDLKCSVVGR 320 (423)
T ss_dssp CEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE--CCCSEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred cEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc--CCCCeEEEEcccCeEEEEeCCCcEEEEEC
Confidence 999999999999999 6999999999999999999543 2223333322 24689999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-CcccEEeccccCceEEEeecCCCcceeEEeeecccchhhcccccccccccccccccccccCc
Q 001236 584 GANGRLGHGDVED-RKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCG 658 (1117)
Q Consensus 584 n~~GQLG~G~~~~-~~~Pt~V~~l~~~~V~~VacG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG 658 (1117)
|.+||||+|+..+ ...|++|+.+.+ +|++|+||.+|++||+.+ +..|.|+...+++.+.|
T Consensus 321 n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~--------------G~v~~wG~n~~GqLG~g 381 (423)
T 3mvd_K 321 PEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID--------------GKLYSWGSGVNNQLGVG 381 (423)
T ss_dssp CGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT--------------SCEEEEECCTTSCSSSS
T ss_pred CCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCC--------------CCEEEECCCCCCCCCCC
Confidence 9999999998766 478999999887 899999999999999854 44566666565554444
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.5e-54 Score=504.59 Aligned_cols=335 Identities=27% Similarity=0.472 Sum_probs=282.8
Q ss_pred EEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCc-eeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCC
Q 001236 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKD-IVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHN 365 (1117)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~-~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~ 365 (1117)
.++.+..|+++|+++|+||+||.|.+||||++.... ...|.+|..+ .+|++|+||.+|+++|+++|+||+||.| .
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n--~ 87 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN--D 87 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC--T
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECC--C
Confidence 456668999999999999999999999999998664 6789988754 7899999999999999999999999999 7
Q ss_pred CCccCCCCC--cceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeC--CCCCCcCCCCCCCc-ccceeecccc
Q 001236 366 AGLLGHGTD--VSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGD--GTFGVLGHGDRKNV-SYPREVESLS 440 (1117)
Q Consensus 366 ~GqLG~g~~--~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~--N~~GQLG~g~~~~~-~~P~~V~~l~ 440 (1117)
+||||.+.. .....|.+|.. ..+|++|+||.+|+++|+++|+||+||. |.+||||+++.... ..|.+| +.
T Consensus 88 ~GqLG~~~~~~~~~~~P~~v~l---~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~ 162 (413)
T 1a12_A 88 EGALGRDTSVEGSEMVPGKVEL---QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QL 162 (413)
T ss_dssp TSTTCSCCCSTTGGGSCEECCC---CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CC
T ss_pred CCCCCCCCCCCccccCCeEecC---CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cC
Confidence 899999875 34567888742 2389999999999999999999999999 99999999866443 358777 45
Q ss_pred cceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCC-----------Ccccceeeccc-----CC
Q 001236 441 GLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE-----------PRLKPTCVPAL-----ID 504 (1117)
Q Consensus 441 ~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~-----------~~~~P~~V~~l-----~~ 504 (1117)
..+|++|+||.+|+++| +.+|+||+||.|.+||||++... ....|..+... ..
T Consensus 163 ~~~i~~ia~G~~hs~al-----------t~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~ 231 (413)
T 1a12_A 163 DVPVVKVASGNDHLVML-----------TADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231 (413)
T ss_dssp SSCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSB
T ss_pred CCCEEEEEecCceEEEE-----------cCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCC
Confidence 56899999999999999 55999999999999999987542 12567666543 45
Q ss_pred CCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-CcceeeecccCC--CCeEEEEeCCCcceeeecCCeEEEE
Q 001236 505 YNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG-KLPCLVEDKLAG--ESVEEIACGAYHVAVLTSRNEVYTW 581 (1117)
Q Consensus 505 ~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~-~~P~~v~~~l~~--~~V~~Is~G~~Ht~aLT~dG~Vy~W 581 (1117)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ..|..+.. +.+ .+|++|+||.+|+++|+++|+||+|
T Consensus 232 ~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~-l~~~~~~v~~ia~G~~hs~al~~~G~v~~w 310 (413)
T 1a12_A 232 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS-FKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 310 (413)
T ss_dssp CCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG-GCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred ccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchh-ccCCCceEEEEecccceEEEEeCCCCEEEe
Confidence 6899999999999999999999999999999999976543 45666654 333 5699999999999999999999999
Q ss_pred eCCCCCCCCCC-CCCCCcccEEeccccCceEEEeecCCCcceeEEeeecccchhhcccccccccccccccccccccCc
Q 001236 582 GKGANGRLGHG-DVEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCG 658 (1117)
Q Consensus 582 G~n~~GQLG~G-~~~~~~~Pt~V~~l~~~~V~~VacG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG 658 (1117)
|.|.+||||+| +..+...|++|+.+. .|++|+||.+|++||+.+ +..|.|+...+.+.+.|
T Consensus 311 G~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~--------------G~v~~wG~n~~gqLG~g 372 (413)
T 1a12_A 311 GRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKD--------------GRVFAWGMGTNYQLGTG 372 (413)
T ss_dssp ECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETT--------------SCEEEEECCTTSTTCSS
T ss_pred eCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCC--------------CCEEEecCCCCCCCCCC
Confidence 99999999999 567778999999887 799999999999999854 45566666555544433
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-54 Score=512.37 Aligned_cols=342 Identities=23% Similarity=0.356 Sum_probs=287.7
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCC---CceeccEEeccC--CCCCeEEEEecCCeEEEEEcCCcEEEE
Q 001236 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVG---KDIVQPHLLESL--TMTSVDFVTCGEFHTCAVTMAGELYTW 359 (1117)
Q Consensus 285 I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~---~~~~~P~~V~~l--~~~~I~~Va~G~~hs~aLT~dG~VysW 359 (1117)
|....++..|+++++++|+||+||.|.+||||+|.. .+...|.+++.+ ...+|++|+||.+|+++|+++|+||+|
T Consensus 12 ~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~w 91 (473)
T 3of7_A 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSW 91 (473)
T ss_dssp CCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEE
T ss_pred hhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEe
Confidence 445678899999999999999999999999999984 457788888776 467899999999999999999999999
Q ss_pred cCCCCCCCccCCCCCcc-----------------------eeeeeeecC--CC---CCCcEEEEEecCCeeEEEccCCcE
Q 001236 360 GDGTHNAGLLGHGTDVS-----------------------HWIPKRISG--PL---EGLQVASVTCGPWHTALITSTGQL 411 (1117)
Q Consensus 360 G~n~~~~GqLG~g~~~~-----------------------~~~P~~V~~--~l---~~~~Iv~Va~G~~HtlaLt~dG~V 411 (1117)
|.| .+||||.+.... ...|.+|.. +. .+.+|++|+||.+|+++|+++|+|
T Consensus 92 G~n--~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~v 169 (473)
T 3of7_A 92 GCN--DVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEV 169 (473)
T ss_dssp ECC--TTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCE
T ss_pred ECC--CCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeE
Confidence 999 789999987654 456777763 22 467899999999999999999999
Q ss_pred EEEeC--CCCCCcCCCCC--CCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCC
Q 001236 412 FTFGD--GTFGVLGHGDR--KNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGH 487 (1117)
Q Consensus 412 y~wG~--N~~GQLG~g~~--~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~ 487 (1117)
|+||. |.+||||++.. .....|.+|..+.+.+|++|+||..|+++| +.+|+||+||.|.+||||+
T Consensus 170 y~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~al-----------t~~G~v~~wG~n~~GqLG~ 238 (473)
T 3of7_A 170 YAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFL-----------DEEGMVFAWGNGQQNQLGR 238 (473)
T ss_dssp EEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEE-----------ETTSCEEEEECCTTSTTSS
T ss_pred EEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEE-----------eCCCeEEEEeCCCCCCCCC
Confidence 99998 68999998544 456789999999888999999999999999 5699999999999999999
Q ss_pred CCCCC----cccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCC-----CcceeeecccCCCC
Q 001236 488 GDKEP----RLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADG-----KLPCLVEDKLAGES 558 (1117)
Q Consensus 488 g~~~~----~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~-----~~P~~v~~~l~~~~ 558 (1117)
+.... ...|..+.. .+|++|+||.+|++||+++|+||+||.|.+||||.+.... ..|..+.. +.+..
T Consensus 239 ~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~-~~~~~ 314 (473)
T 3of7_A 239 KVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL-PDNVV 314 (473)
T ss_dssp CCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC-CTTCC
T ss_pred CccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccc-cCCcc
Confidence 86543 456666643 6899999999999999999999999999999999876432 34666653 55678
Q ss_pred eEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCC--------------CCcccEEeccccCceEEEeecCCCcceeE
Q 001236 559 VEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVE--------------DRKTPALVEALKDRHVKYIACGSNYSAAI 624 (1117)
Q Consensus 559 V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~--------------~~~~Pt~V~~l~~~~V~~VacG~~hT~aL 624 (1117)
|++|+||.+|+++|+++|+||+||.|.+||||++... ....|+.|+.+. .|++|+||.+|++||
T Consensus 315 i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al 392 (473)
T 3of7_A 315 IRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAV 392 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEE
Confidence 9999999999999999999999999999999987531 234677777554 699999999999999
Q ss_pred EeeecccchhhcccccccccccccccccccccCcc
Q 001236 625 CLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGL 659 (1117)
Q Consensus 625 ~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~ 659 (1117)
+.+ +..|.|+...+.+.+.|.
T Consensus 393 ~~~--------------G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 393 AQN--------------GIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp ETT--------------SCEEEEECCTTCTTCCCS
T ss_pred eCC--------------CcEEEeeCCCCCCCCCCC
Confidence 743 456777776666655554
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=6.7e-48 Score=430.51 Aligned_cols=249 Identities=26% Similarity=0.419 Sum_probs=215.1
Q ss_pred CCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCC
Q 001236 283 LDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 283 ~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n 362 (1117)
.+|++|+||..|+++|+ +|+||+||.|.+||||.. .. ...+|++|+||.+|+++|+ +|+||+||.|
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p--------~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n 89 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP--------AA----TQSGVDAIAAGNYHSLALK-DGEVIAWGGN 89 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC--------GG----GGSCCCEEEECSSEEEEEE-TTEEEEEECC
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC--------cc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCC
Confidence 37899999999999998 999999999999999952 11 1258999999999999996 9999999999
Q ss_pred CCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccc
Q 001236 363 THNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGL 442 (1117)
Q Consensus 363 ~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~ 442 (1117)
.+||||. |.++. .+|++|+||.+|+++|+ +|+||+||.|.+||||.. . ....
T Consensus 90 --~~Gqlg~--------P~~~~-----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~----~~~~ 141 (282)
T 3qhy_B 90 --EDGQTTV--------PAEAR-----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------A----EAQS 141 (282)
T ss_dssp --TTSTTCC--------CGGGS-----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------G----GGGS
T ss_pred --CCCCCCC--------CcccC-----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------c----cCCC
Confidence 7899984 44442 37999999999999999 999999999999999842 1 1223
Q ss_pred eEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEec
Q 001236 443 RTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTT 522 (1117)
Q Consensus 443 kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~ 522 (1117)
+|++|+||..|+++| + +|+||+||.|.+||||. |.. ...+|++|+||.+|+++| +
T Consensus 142 ~i~~i~~G~~~~~~l-----------~-~G~v~~wG~n~~gqlg~--------p~~----~~~~v~~i~~G~~hs~al-~ 196 (282)
T 3qhy_B 142 GVTALDGGVYTALAV-----------K-NGGVIAWGDNYFGQTTV--------PAE----AQSGVDDVAGGIFHSLAL-K 196 (282)
T ss_dssp SEEEEEECSSEEEEE-----------E-TTEEEEEECCTTSTTSC--------CGG----GGSSEEEEEECSSEEEEE-E
T ss_pred CeEEEEcccCEEEEE-----------E-CCEEEEecCCCCCCCCC--------cee----cCCCeEEEEecCCEEEEE-E
Confidence 699999999999998 4 79999999999999983 322 246899999999999999 8
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCCCCCCCCCCCCCCcccEE
Q 001236 523 SGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKTPAL 602 (1117)
Q Consensus 523 dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~~GQLG~G~~~~~~~Pt~ 602 (1117)
+|+||+||.|.+||||.+.. ...+|++|+||.+|+++|+ +|+||+||.|.+||++..
T Consensus 197 ~G~v~~wG~n~~gqlg~p~~------------~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~---------- 253 (282)
T 3qhy_B 197 DGKVIAWGDNRYKQTTVPTE------------ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ---------- 253 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGG------------GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------
T ss_pred CCeEEEEECCCCCCCCCCcc------------cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------
Confidence 99999999999999996431 1246999999999999999 999999999999998752
Q ss_pred eccccCceEEEeecCCCcceeEEee
Q 001236 603 VEALKDRHVKYIACGSNYSAAICLH 627 (1117)
Q Consensus 603 V~~l~~~~V~~VacG~~hT~aL~~~ 627 (1117)
..|++|+||..|++||+.+
T Consensus 254 ------~~v~~iaaG~~h~~al~~~ 272 (282)
T 3qhy_B 254 ------SGVSSIEAGPNAAYALKGG 272 (282)
T ss_dssp ------SCEEEEEECSSCEEEEEC-
T ss_pred ------CCcEEEEECcCeEEEEecC
Confidence 1599999999999999865
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.6e-41 Score=377.27 Aligned_cols=240 Identities=23% Similarity=0.394 Sum_probs=199.9
Q ss_pred cccCCCCCEEEecCCCCCCcccCCCCCCccccCcccccccccccccCCCCCEEEEEecCceEEEEEcCCcEEEEeCCCCC
Q 001236 234 DDCDALGDVYIWGEVICDNVVKAGADKNVNYLGTRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEVFTWGEESGG 313 (1117)
Q Consensus 234 ~~~~s~G~Vy~WG~n~~~g~LG~G~~~~~~~~~~~~~~~~P~~l~s~~~~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~G 313 (1117)
.+++ +|+||+||.| ..|+||. |.. ...+|++|+||..|+++|+ +|+||+||.|.+|
T Consensus 37 ~~l~-~G~v~~wG~n-~~Gqlg~-----------------p~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~G 92 (282)
T 3qhy_B 37 LALK-GGKVLGWGAN-LNGQLTM-----------------PAA----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDG 92 (282)
T ss_dssp EEEE-TTEEEEEECC-SSSTTSC-----------------CGG----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTS
T ss_pred EEEE-CCEEEEEeCC-CCCCCCC-----------------Ccc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCC
Confidence 4666 9999999998 5788874 211 1237899999999999996 9999999999999
Q ss_pred ccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEE
Q 001236 314 RLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVA 393 (1117)
Q Consensus 314 QLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv 393 (1117)
|||. |..+ ..+|++|+||.+|+++|+ +|+||+||.| .+||||.. .. ...+|+
T Consensus 93 qlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n--~~gqlg~~--------~~-----~~~~i~ 144 (282)
T 3qhy_B 93 QTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDD--SDGQTTVP--------AE-----AQSGVT 144 (282)
T ss_dssp TTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECC--TTSTTSCC--------GG-----GGSSEE
T ss_pred CCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCC--CCCcCCCC--------cc-----CCCCeE
Confidence 9996 3333 248999999999999999 9999999999 77999842 21 123699
Q ss_pred EEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCce
Q 001236 394 SVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGK 473 (1117)
Q Consensus 394 ~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~ 473 (1117)
+|+||..|+++|+ +|+||+||.|.+||||. |..+ ..+|++|+||.+|+++| + +|+
T Consensus 145 ~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~----~~~v~~i~~G~~hs~al-~-----------~G~ 199 (282)
T 3qhy_B 145 ALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA----QSGVDDVAGGIFHSLAL-K-----------DGK 199 (282)
T ss_dssp EEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG----GSSEEEEEECSSEEEEE-E-----------TTE
T ss_pred EEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec----CCCeEEEEecCCEEEEE-E-----------CCe
Confidence 9999999999999 89999999999999984 3222 34799999999999999 6 999
Q ss_pred EEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecc
Q 001236 474 LFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDK 553 (1117)
Q Consensus 474 Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~ 553 (1117)
||+||.|.+||||... + ...+|++|+||..|+++|+ +|+||+||.|.+||++.+
T Consensus 200 v~~wG~n~~gqlg~p~----------~--~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~------------- 253 (282)
T 3qhy_B 200 VIAWGDNRYKQTTVPT----------E--ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ------------- 253 (282)
T ss_dssp EEEEECCTTSTTCCCG----------G--GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS-------------
T ss_pred EEEEECCCCCCCCCCc----------c--cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC-------------
Confidence 9999999999998532 1 1246999999999999999 999999999999998751
Q ss_pred cCCCCeEEEEeCCCcceeeecCCeEE
Q 001236 554 LAGESVEEIACGAYHVAVLTSRNEVY 579 (1117)
Q Consensus 554 l~~~~V~~Is~G~~Ht~aLT~dG~Vy 579 (1117)
..|++|+||..|+++|+++++.+
T Consensus 254 ---~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 ---SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp ---SCEEEEEECSSCEEEEEC-----
T ss_pred ---CCcEEEEECcCeEEEEecCCCCC
Confidence 36999999999999999987654
No 13
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.91 E-value=8.3e-25 Score=216.56 Aligned_cols=115 Identities=24% Similarity=0.419 Sum_probs=104.0
Q ss_pred ccHHHHHHHHhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEec-----CCCCcccccceeeecccccCChhHhhhcCCCC
Q 001236 12 RDIEQALIALKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWIS-----SSGERSLKLASVSKIIPGQRTAVFQRYLRPEK 86 (1117)
Q Consensus 12 ~~~~~~l~~L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s-----~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~ 86 (1117)
.+++|+|.+|++|+.|+||++++|+|.|+|+|++|+..|||.+ .+.++.|+|++|++||.|++|+.|++|....+
T Consensus 4 ~~~~q~l~~L~~Gt~l~K~~~~~~~k~r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~ 83 (131)
T 1mai_A 4 LQDDPDLQALLKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIP 83 (131)
T ss_dssp TTSCHHHHHHHHCEEEEEESSSSCEEEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSC
T ss_pred CCHHHHHHHHHcCCeEEEECCCCcceeEEEEECCCCCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCC
Confidence 4678999999999999999999989999999999999996642 22567899999999999999999999998888
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
+++||||||+++.++|||||+|++||+.|++||++|+...
T Consensus 84 ~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 84 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHS 123 (131)
T ss_dssp GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred ccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999888999999999999999999999999443
No 14
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.50 E-value=2.8e-14 Score=178.90 Aligned_cols=112 Identities=12% Similarity=0.156 Sum_probs=94.6
Q ss_pred HHHHHhcCCeEEEEecCC-cCeeEeEEEeCCCCEEEEecCCC-CcccccceeeecccccCCh------hHhhhcC----C
Q 001236 17 ALIALKKGAQLLKYGRKG-KPKFYPFRLSNDETSLIWISSSG-ERSLKLASVSKIIPGQRTA------VFQRYLR----P 84 (1117)
Q Consensus 17 ~l~~L~~Gt~llK~~r~~-kpk~r~f~Ls~d~~~l~W~s~~~-~~~l~l~~I~eI~~G~~t~------~f~r~~~----~ 84 (1117)
...+|++|+.|+|+++++ ++++|+|+|++|+..|.|.+.++ .+.|.|++|++||.|++|+ .++++.. .
T Consensus 13 v~~~L~~Gt~~~K~~~~~~~~k~~~frLd~d~~~l~W~~~~k~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~~~~ 92 (799)
T 2zkm_X 13 VKAYLSQGERFIKWDDETTVASPVILRVDPKGYYLYWTYQSKEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDN 92 (799)
T ss_dssp CCHHHHHCEEEEEECTTTCCEEEEEEEECTTSCEEEEEETTSCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTC
T ss_pred ccHHHhCCCEEEEEcCCCcceeEEEEEEcCCCCEEEEccCCCcCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccCccc
Confidence 346899999999998876 46899999999999999986544 4789999999999999996 4555522 3
Q ss_pred CCCCceEEEEEcCCc---ceEEEEeCCHHHHHHHHHHHHHHHHccCC
Q 001236 85 EKDYLSFSLIYNNGK---RSLDLICKDKVEAEVWIAGLKALISSGQG 128 (1117)
Q Consensus 85 ~~~~~~FSIiy~~~~---rtLDLva~~~~ea~~Wv~GL~~Li~~~~~ 128 (1117)
..+++||||||+.+. ++|||||+++++|+.|++||++|+...+.
T Consensus 93 ~~e~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~~~~ 139 (799)
T 2zkm_X 93 SFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKHPLT 139 (799)
T ss_dssp CGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHCTTG
T ss_pred ccccceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence 568999999998864 47999999999999999999999976553
No 15
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=180.91 Aligned_cols=108 Identities=16% Similarity=0.310 Sum_probs=92.0
Q ss_pred HHHhcCCeEEEEecC-CcCeeEeEEEeCCCCEEEEecCCCC-cccccceeeecccccCChh-----HhhhcC-----CCC
Q 001236 19 IALKKGAQLLKYGRK-GKPKFYPFRLSNDETSLIWISSSGE-RSLKLASVSKIIPGQRTAV-----FQRYLR-----PEK 86 (1117)
Q Consensus 19 ~~L~~Gt~llK~~r~-~kpk~r~f~Ls~d~~~l~W~s~~~~-~~l~l~~I~eI~~G~~t~~-----f~r~~~-----~~~ 86 (1117)
.+|++|+.|+||.++ +++++++|+|++|+..|+|.+.+++ ..+.|++|++||.|++|+. ||++.. ...
T Consensus 19 ~~L~~Gt~f~K~~~~~~~~k~~~frLD~d~~~L~W~~~~ke~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~~~~~~~ 98 (885)
T 3ohm_B 19 ETLRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTGPNMEVDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDARL 98 (885)
T ss_dssp HHHHHCEEEEEECTTCCSCCEEEEEECTTSCEEEEECGGGCEEEEEGGGEEEEEETTTSCCCCSHHHHHCC---------
T ss_pred HHHhCCCeEEEECCCCCCcEEEEEEECCCCCEEEEeCCCCCCceEeeehhhhhhcCcCCCCCccHHHHHHhccCcccCcc
Confidence 679999999999777 6899999999999999999875554 4699999999999998877 777543 478
Q ss_pred CCceEEEEEcCCc---ceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 87 DYLSFSLIYNNGK---RSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 87 ~~~~FSIiy~~~~---rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
+++||||||+.+. ++|||||+++++|+.|++||++|+...
T Consensus 99 e~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~~ 141 (885)
T 3ohm_B 99 EEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMNI 141 (885)
T ss_dssp CTTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHHCH
T ss_pred cccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHhhh
Confidence 8999999999764 469999999999999999999999543
No 16
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=99.48 E-value=6.4e-14 Score=147.54 Aligned_cols=115 Identities=26% Similarity=0.406 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCeEEEEe-cCCcCeeEeEEEeCCCCEEEEecCCC-----------CcccccceeeecccccCChhHhhhc
Q 001236 15 EQALIALKKGAQLLKYG-RKGKPKFYPFRLSNDETSLIWISSSG-----------ERSLKLASVSKIIPGQRTAVFQRYL 82 (1117)
Q Consensus 15 ~~~l~~L~~Gt~llK~~-r~~kpk~r~f~Ls~d~~~l~W~s~~~-----------~~~l~l~~I~eI~~G~~t~~f~r~~ 82 (1117)
+|.|..|++|+.|.|++ ++.+.++||++|++|.+.|+|....+ ...|+|++|++|+.|..++.++...
T Consensus 26 eQRi~~L~~G~~F~k~~~~r~~~k~~f~rLs~n~k~L~y~d~~~~~~~~p~ld~l~~kI~ls~Is~V~sg~~~p~~~~~~ 105 (203)
T 3a98_B 26 QQRLNRLVEGTCFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKG 105 (203)
T ss_dssp HHHHHHHHHCEEEECSSCCTTCCSEEEEEECTTSSEEEEEECCBCSSCBCCBCCSCCEEEGGGEEEEEEGGGSTTC----
T ss_pred HHHHHHHHCCCeEeccCCccccCceEEEEECCCCceEEEccccccccCCCChhhcccceeHhhhhHhhcCCCCccccccc
Confidence 68999999999999984 44567889999999999999955443 3469999999999999999986532
Q ss_pred ----CCCCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHccCCCC
Q 001236 83 ----RPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGR 130 (1117)
Q Consensus 83 ----~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~~~ 130 (1117)
......++|||+|+.+ .+|||||+|++++..|++||++|+...|.+.
T Consensus 106 ~~k~~~~~~~laFSii~~~~-~~L~fvA~s~~~~~~W~DGL~~Llg~~~~S~ 156 (203)
T 3a98_B 106 ALKQNKEVLELAFSILYDSN-CQLNFIAPDKHEYCIWTDGLNALLGKDMMSD 156 (203)
T ss_dssp ----CCTTGGGEEEEEETTT-EEEEEECSSHHHHHHHHHHHHHHTTCCCCCH
T ss_pred cccccCcccceEEEEecCCC-ceEEEecCCHHHHHHHHHHHHHHhcCCCCCH
Confidence 2234568999999876 8999999999999999999999998777653
No 17
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.45 E-value=6.7e-14 Score=174.68 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=90.8
Q ss_pred HHHhcCCeEEEEecCCcC-eeEeEEEeCCCCEEEEecCCC-C-cccccceeeecccccCCh-----hHhhhcC------C
Q 001236 19 IALKKGAQLLKYGRKGKP-KFYPFRLSNDETSLIWISSSG-E-RSLKLASVSKIIPGQRTA-----VFQRYLR------P 84 (1117)
Q Consensus 19 ~~L~~Gt~llK~~r~~kp-k~r~f~Ls~d~~~l~W~s~~~-~-~~l~l~~I~eI~~G~~t~-----~f~r~~~------~ 84 (1117)
..|++|+.|+|+++++++ ++|+|+|++|+..|+|.+.++ . +.+.|++|++||.|++|+ .++++.. .
T Consensus 20 ~~L~~G~~~~K~~~~s~~~~~~~f~lD~d~~~L~W~~~~k~~~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~~~ 99 (816)
T 3qr0_A 20 EQLIKGDKFLKWEEGSSGFIEILLRVDPKGYFLYWKIEGKEDTQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSNI 99 (816)
T ss_dssp HHHHHCEEEEEECTTCCCCEEEEEEECTTSCEEEECCTTCSSCEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCTTS
T ss_pred HHHhCCCeEEEECCCCCcceeEEEEEcCCCCEEEEeCCCCCcCcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCCcc
Confidence 569999999999999887 689999999999999987544 3 689999999999999985 3554432 2
Q ss_pred CCCCceEEEEEcCCcce---EEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 85 EKDYLSFSLIYNNGKRS---LDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 85 ~~~~~~FSIiy~~~~rt---LDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
..+++||||||+.+..+ |||||+++++|+.|++||++|+.+
T Consensus 100 ~~e~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~~ 143 (816)
T 3qr0_A 100 PLQDKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAYN 143 (816)
T ss_dssp CHHHHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHTC
T ss_pred cccccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 45789999999987545 499999999999999999999943
No 18
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=122.29 Aligned_cols=71 Identities=25% Similarity=0.571 Sum_probs=63.4
Q ss_pred eecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCC----CCCeecChhhHhhhhhhc
Q 001236 627 HKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNP----GKPYRVCDCCFAKLNKVS 697 (1117)
Q Consensus 627 ~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~----~kp~RVC~~C~~~l~~~~ 697 (1117)
..|+++.+...|+.|+..|++.++||||++||.+||..|++++..++.++... .+++|||+.||..|.+..
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~ 80 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSG 80 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCC
T ss_pred CccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccC
Confidence 57999999999999999999999999999999999999999888777766542 378999999999998754
No 19
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.24 E-value=1.7e-12 Score=118.08 Aligned_cols=69 Identities=33% Similarity=0.727 Sum_probs=61.0
Q ss_pred eeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhh
Q 001236 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKV 696 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~ 696 (1117)
...|+++.+...|+.|+..|++.++||||++||.+||..|++++..++.+.. .+|+|||+.||..|.+.
T Consensus 12 ~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~--~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 12 KGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGI--TEPERVCDACYLALRSS 80 (84)
T ss_dssp CSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTE--EEEEECCHHHHHHHHTS
T ss_pred CCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCC--CCCCEECHHHHHHHhhc
Confidence 3579999999999999999999999999999999999999998876655433 48999999999999764
No 20
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.23 E-value=2.9e-12 Score=116.10 Aligned_cols=71 Identities=35% Similarity=0.824 Sum_probs=55.1
Q ss_pred eeEEeeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhh
Q 001236 622 AAICLHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKV 696 (1117)
Q Consensus 622 ~aL~~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~ 696 (1117)
.+|....|+++.+...|+.|+..|++.+++|||++||.+||..|+.++...+. ..+|+|||+.||..|.+.
T Consensus 6 ~~~~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~----~~~~~RVC~~C~~~l~~~ 76 (82)
T 2yw8_A 6 QALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS----YPKPVRVCDSCHTLLLQR 76 (82)
T ss_dssp ---------CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT----CSSCEEECHHHHHHTTC-
T ss_pred hhcCCCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC----CCCcCEECHHHHHHHHHh
Confidence 35566789999999999999999999999999999999999999997764432 368999999999998764
No 21
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.18 E-value=8.3e-12 Score=121.95 Aligned_cols=65 Identities=42% Similarity=0.956 Sum_probs=58.1
Q ss_pred eeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhh
Q 001236 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~ 694 (1117)
...|+++.+...|+.|+..|++.+++|||++||.+||..||+++...+ ...+|+|||+.||..|+
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p----~~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP----SSKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCT----TCSSCEEECHHHHHHTT
T ss_pred CCccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccC----CCCCCCEeCHHHHHHhc
Confidence 367999999999999999999999999999999999999999876443 34689999999999886
No 22
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.16 E-value=8e-12 Score=110.65 Aligned_cols=67 Identities=31% Similarity=0.726 Sum_probs=56.7
Q ss_pred eeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhhc
Q 001236 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVS 697 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~~ 697 (1117)
.+.|+++ ..|+.|+..|++.++||||++||.+||..|++++...+.++.. +|+|||+.||..|..+.
T Consensus 5 ~p~W~~~---~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~--~~~RVC~~C~~~l~~i~ 71 (73)
T 1vfy_A 5 PADWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIY--EPVRVCDSCFEDYEFIV 71 (73)
T ss_dssp --CCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEE--EEEEECHHHHHHHHHHH
T ss_pred CCcCccC---CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCC--CCCEECHHHHHHHHHHh
Confidence 4578875 4799999999999999999999999999999988766665543 79999999999998753
No 23
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.16 E-value=1.1e-11 Score=114.21 Aligned_cols=69 Identities=35% Similarity=0.788 Sum_probs=60.6
Q ss_pred eeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhhcc
Q 001236 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSE 698 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~~~ 698 (1117)
.+.|+++.+...|..|...|++.+++|||++||.+||..|+.++...+ ..++|+|||+.||..|++...
T Consensus 11 ~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~----~~~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 11 QPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQ----YLEKEARVCVVCYETISKAQA 79 (90)
T ss_dssp CCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEET----TTTEEEEECHHHHHHHHHHC-
T ss_pred CCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecC----CCCCCCeECHHHHHHHHHHhh
Confidence 468999999999999999999999999999999999999999877443 235899999999999988755
No 24
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.09 E-value=4.5e-11 Score=109.53 Aligned_cols=63 Identities=29% Similarity=0.601 Sum_probs=54.4
Q ss_pred hhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhhcc
Q 001236 633 AEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSE 698 (1117)
Q Consensus 633 ~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~~~ 698 (1117)
.+...|+.|+..|++.++||||++||.+||..|+.++..++.++ .+|+|||+.||..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g---~~~~RVC~~C~~~l~~~~~ 69 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG---NTQQKVCKQCHTILTRGSS 69 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT---SEEEEECHHHHHHHHHCCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC---CCcCEECHHHHHHHHhccc
Confidence 35568999999999999999999999999999999887665543 4799999999999987543
No 25
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=98.96 E-value=1.5e-10 Score=124.52 Aligned_cols=68 Identities=34% Similarity=0.840 Sum_probs=56.3
Q ss_pred eeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhhcc
Q 001236 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVSE 698 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~~~ 698 (1117)
.+.|+.. ..|..|+..|++.++||||++||.+||..||+++...+.++. .+|+|||+.||..|++..|
T Consensus 158 ~p~W~~~---~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~--~~~~RVC~~C~~~l~~~~e 225 (226)
T 3zyq_A 158 APDWVDA---EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGI--EKEVRVCEPCYEQLNRKAE 225 (226)
T ss_dssp CCCCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTE--EEEEEECHHHHHHHCC---
T ss_pred ccccccC---CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCC--CCCCEeCHHHHHHhhhhcc
Confidence 4678864 589999999999999999999999999999998876655443 3899999999999976543
No 26
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=98.95 E-value=1.9e-10 Score=123.49 Aligned_cols=65 Identities=37% Similarity=0.873 Sum_probs=56.1
Q ss_pred eeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhh
Q 001236 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~ 695 (1117)
.+.|+++ ..|..|+..|++.++||||++||.+||..||.++...+.++. .+|+|||+.||..|++
T Consensus 155 ~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~--~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 155 APNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGI--EKEVRVCDGCFAALQR 219 (220)
T ss_dssp CCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTE--EEEEEECHHHHHHHHH
T ss_pred cccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCC--CCCCEeCHHHHHHHhc
Confidence 4578864 689999999999999999999999999999998876655443 4899999999999865
No 27
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=98.90 E-value=3.1e-10 Score=109.31 Aligned_cols=59 Identities=22% Similarity=0.456 Sum_probs=44.3
Q ss_pred ecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhh
Q 001236 628 KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKV 696 (1117)
Q Consensus 628 kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~ 696 (1117)
.|+++.+...|+.|+..|++.++||||++||.+||..||+++.. ++|||+.||..+...
T Consensus 12 ~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~----------~vRVC~~C~~~~~~~ 70 (120)
T 1y02_A 12 FPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN----------GPRLCLLCQRFRATA 70 (120)
T ss_dssp --------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------------CCEEHHHHHHHHTT
T ss_pred CCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC----------CceECHHHHHHHhcc
Confidence 47788888999999999999999999999999999999987652 499999999987654
No 28
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=98.68 E-value=2.1e-09 Score=126.50 Aligned_cols=67 Identities=31% Similarity=0.652 Sum_probs=0.0
Q ss_pred eeecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhh
Q 001236 626 LHKWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNK 695 (1117)
Q Consensus 626 ~~kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~ 695 (1117)
.+.|+++.+...|..|+..|++.+++|||++||.+||..||+++... +....+|+|||+.||..|.+
T Consensus 366 ~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~---~~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 366 PPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL---KYLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeC---CCCCCCcCEecHHHHHHHHh
Confidence 46799999999999999999999999999999999999999876643 33446899999999999865
No 29
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=97.48 E-value=0.00072 Score=68.78 Aligned_cols=85 Identities=13% Similarity=0.232 Sum_probs=60.7
Q ss_pred eeEeEEEeCCCCEEEEecCCC-----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSG-----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVE 111 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~-----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~e 111 (1117)
|.|+|.|..+ .|.|++... ...|+|..|..|..-.... .........+|.|+..+ |++-|.|++++|
T Consensus 37 KkRwFVL~~~--~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~----~~~~~~~~~~f~i~t~~--rt~~l~A~s~~e 108 (164)
T 2lul_A 37 KERLFVLTKS--MLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDD----GVIPCQNKYPFQVVHDA--NTLYIFAPSPQS 108 (164)
T ss_dssp EEEEEEEESS--EEEEECCCSSSCCCCCEEEGGGCCEEEECCCCS----SSCCSSSCSEEEEECSS--CEEEEECSSHHH
T ss_pred eeEEEEEECC--EEEEEeccCcccccccEEEEeeeEEEEeccccc----cCcccccceeEEEecCC--cEEEEECCCHHH
Confidence 6799999765 677865432 2357887776665433221 11223456899999854 899999999999
Q ss_pred HHHHHHHHHHHHHccCCC
Q 001236 112 AEVWIAGLKALISSGQGG 129 (1117)
Q Consensus 112 a~~Wv~GL~~Li~~~~~~ 129 (1117)
++.||..|+.++..+...
T Consensus 109 ~~~Wi~aL~~~i~~n~~~ 126 (164)
T 2lul_A 109 RDLWVKKLKEEIKNNNNI 126 (164)
T ss_dssp HHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHHHChhh
Confidence 999999999999666544
No 30
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.18 E-value=0.00082 Score=63.43 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=65.4
Q ss_pred eEEEEec-CCcCeeEeEEEeCCCCEEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcc
Q 001236 26 QLLKYGR-KGKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKR 100 (1117)
Q Consensus 26 ~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~r 100 (1117)
.|.|-+. ...-+.|+|.|.++...|.|+... ....|+|..+..|....... ..+.......+|.|.. ..|
T Consensus 13 ~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~---~~~~~~~~~~~F~i~~--~~r 87 (117)
T 1v5u_A 13 ILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTI---GAPKTVDEKAFFDVKT--TRR 87 (117)
T ss_dssp EEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCT---TSCSSSCTTTCEEEEE--SSC
T ss_pred EEEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccc---cccccCCCCeEEEEEC--CCc
Confidence 3455533 223378999999766788886554 24468888887776543211 1112244568999966 458
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 101 SLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 101 tLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
++-|.|.+++|++.|+..|+..+...
T Consensus 88 ~~~l~a~s~~e~~~Wi~al~~~i~~~ 113 (117)
T 1v5u_A 88 VYNFCAQDVPSAQQWVDRIQSCLSSG 113 (117)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTCCCC
T ss_pred eEEEECCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999998776443
No 31
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=97.14 E-value=0.0015 Score=66.83 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=60.3
Q ss_pred CCcCeeEeEEEeCCCCEEEEecC----C----CCcccccceeeeccccc--CChhHhhhc---CC---CCCC--------
Q 001236 33 KGKPKFYPFRLSNDETSLIWISS----S----GERSLKLASVSKIIPGQ--RTAVFQRYL---RP---EKDY-------- 88 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d~~~l~W~s~----~----~~~~l~l~~I~eI~~G~--~t~~f~r~~---~~---~~~~-------- 88 (1117)
++| |.|+|.|..+ .|.|++. . ....|+|.++..|..-. ....|.+.. .. ..+.
T Consensus 22 k~W-KkRwFVL~~~--~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 98 (169)
T 1btk_A 22 LNF-KKCLFLLTVH--KLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFP 98 (169)
T ss_dssp CCE-EEEEEEECSS--EEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCC
T ss_pred CCC-ceEEEEEcCC--EEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccccCccccccccccccccc
Confidence 344 7788999754 7888664 2 24468888776554321 222343321 00 1111
Q ss_pred ceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHccCC
Q 001236 89 LSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQG 128 (1117)
Q Consensus 89 ~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~ 128 (1117)
.+|.|+..+ |++-|.|++++|++.||..|+..+..+..
T Consensus 99 ~~F~I~t~~--rt~yl~A~s~~E~~eWi~aI~~~i~~n~~ 136 (169)
T 1btk_A 99 YPFQVVYDE--GPLYVFSPTEELRKRWIHQLKNVIRYNSD 136 (169)
T ss_dssp EEEEEEETT--CCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccEEEEeCC--ceEEEEcCCHHHHHHHHHHHHHHHHHCcc
Confidence 799999865 89999999999999999999999965443
No 32
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.12 E-value=0.0031 Score=61.33 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=62.3
Q ss_pred eEEEEec--CCcCeeEeEEEeCCCCEEEEecCCCC----cccccc-eeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 26 QLLKYGR--KGKPKFYPFRLSNDETSLIWISSSGE----RSLKLA-SVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 26 ~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~~----~~l~l~-~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
.|.|-+. ++| |.|+|.|..+ ..|.|++.... ..|.+. ++.+|..|..+..... ........+|.|+..+
T Consensus 13 ~L~K~g~~~k~W-kkRwFVL~~~-~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~-~~~~~~~~~F~I~~~~- 88 (130)
T 2d9v_A 13 WLWRQSSILRRW-KRNWFALWLD-GTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQP-PEGRSRDGLLTVNLRE- 88 (130)
T ss_dssp EEEEECSSSCCE-EEEEEEEETT-TEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCC-CSSCCTTTEEEEEETT-
T ss_pred EEEeecCccCCc-eeeEEEEccC-CEEEEEeCCCCCCcCceEecccceeEEeccccccccCC-CCCCCcCcEEEEEeCC-
Confidence 3455543 333 7888999644 56778765432 234443 4456666654422110 1123345799999854
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
.|++-|.|.+++|++.|+..|+..+...
T Consensus 89 ~r~~~l~A~s~~e~~~Wi~al~~a~~~~ 116 (130)
T 2d9v_A 89 GSRLHLCAETRDDAIAWKTALMEANSTP 116 (130)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999888543
No 33
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=96.90 E-value=0.0036 Score=60.01 Aligned_cols=92 Identities=27% Similarity=0.299 Sum_probs=62.8
Q ss_pred hcCCeEEEEec-CCcCeeEeEEEeCCCCEEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 22 KKGAQLLKYGR-KGKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 22 ~~Gt~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
+.| .|.|-+. .+.-+.|+|.|..+ .|.|+... ....|+|..+..|..... .....||.|+..
T Consensus 20 ~~G-~L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~----------~~~~~~F~i~~~ 86 (126)
T 1fao_A 20 KEG-YLTKQGGLVKTWKTRWFTLHRN--ELKYFKDQMSPEPIRILDLTECSAVQFDYS----------QERVNCFCLVFP 86 (126)
T ss_dssp EEE-EEEEECSSSCCEEEEEEEEETT--EEEEESSTTCSSCSEEEEGGGCCEEEEECS----------SSSSSEEEEEET
T ss_pred EEE-EEEEcCCCCCCcccEEEEEECC--EEEEeCCCCCCCceeEEEccceEEEEeccc----------CCCCCEEEEEeC
Confidence 444 3455432 22337789999765 67776543 244577777765654321 223579999974
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHHHHHHccCC
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLKALISSGQG 128 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~ 128 (1117)
.|++-|.|.+++|++.|+..|+..+...+.
T Consensus 87 --~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 116 (126)
T 1fao_A 87 --FRTFYLCAKTGVEADEWIKILRWKLSQIRK 116 (126)
T ss_dssp --TEEEEEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred --CcEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999976443
No 34
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.0045 Score=59.04 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=61.1
Q ss_pred eEEEEec----CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC
Q 001236 26 QLLKYGR----KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1117)
Q Consensus 26 ~llK~~r----~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~ 97 (1117)
.|.|-+. ++| +.|+|.|..+...|.|++... ...|+|..+..|.. ......+|.|+..
T Consensus 13 ~L~K~g~~~~~k~W-kkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~------------~~~~~~~F~i~~~- 78 (119)
T 2dhk_A 13 YLSKFGGKGPIRGW-KSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCK------------ADAEEGIFEIKTP- 78 (119)
T ss_dssp EEEECSCSSSSCCC-EEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEEC------------TTGGGCEEEEECS-
T ss_pred EEEecCCCCCCCCc-eeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEec------------CCCCCCEEEEEeC-
Confidence 4556553 334 778999998877888866543 34577776665542 1123469998865
Q ss_pred CcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
.|++-|.|.+++|++.|+..|+..+.
T Consensus 79 -~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 79 -SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp -SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred -CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999998883
No 35
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.76 E-value=0.0053 Score=57.85 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=59.3
Q ss_pred hcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEE
Q 001236 22 KKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 22 ~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
+.| .|.|-+. .+.-+.|+|.|.. ..|.|++.. ....|+|..+..|..-. ..||.|+-
T Consensus 10 ~~G-~L~K~~~~~~~~WkkR~fvL~~--~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~--------------~~~F~i~~ 72 (115)
T 2cod_A 10 KSG-WLDKLSPQGKRMFQKRWVKFDG--LSISYYNNEKEMYSKGIIPLSAISTVRVQG--------------DNKFEVVT 72 (115)
T ss_dssp EEE-EEEECCSSSSSCCEEEEEEECS--SEEEEEESSCCSSCCCEEETTTEEEEEEET--------------TTEEEEEE
T ss_pred EEE-EEEEcCCCCCCCCceEEEEEEC--CEEEEEcCCCCcccCCEEECCcceEEEeCC--------------CCEEEEEe
Confidence 344 3556544 2223788899974 467775543 24567887776665421 47999994
Q ss_pred cCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 96 NNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
..|++-|.|.+++|++.|+..|+..+
T Consensus 73 --~~r~~~l~a~s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 73 --TQRTFVFRVEKEEERNDWISILLNAL 98 (115)
T ss_dssp --SSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 46999999999999999999999888
No 36
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=96.70 E-value=0.0076 Score=58.20 Aligned_cols=97 Identities=21% Similarity=0.325 Sum_probs=57.5
Q ss_pred eEEEE-ec---CCcCeeEeEEEeCCCCEEEEecCC-------CCcccccceeeecccccCChh----Hhh-----hcCCC
Q 001236 26 QLLKY-GR---KGKPKFYPFRLSNDETSLIWISSS-------GERSLKLASVSKIIPGQRTAV----FQR-----YLRPE 85 (1117)
Q Consensus 26 ~llK~-~r---~~kpk~r~f~Ls~d~~~l~W~s~~-------~~~~l~l~~I~eI~~G~~t~~----f~r-----~~~~~ 85 (1117)
.|.|- ++ ++| |.|+|.|..|+. |.|++.. ..+.|.|..+....++..-+. ... ....+
T Consensus 9 ~L~K~~g~~~~k~W-kkRwFvL~~~~~-l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~ 86 (128)
T 2rlo_A 9 FLLKRSGNSLNKEW-KKKYVTLSSNGF-LLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSAGQAE 86 (128)
T ss_dssp EEEEECSCSTTCCE-EEEEEEEETTTE-EEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCCSSCC
T ss_pred EEEEecCCCccCCc-cEEEEEEeCCCE-EEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccccccc
Confidence 45565 32 344 778999987654 6665431 123455544332222110000 000 00012
Q ss_pred CCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 86 ~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
....||.|+..+ .|++.|.|.+++|++.||..|+..|..
T Consensus 87 ~~~~~F~I~t~~-~r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 87 EENFEFLIVSST-GQTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CCCCCEEEECTT-SCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCC-CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 456799998753 489999999999999999999988743
No 37
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.67 E-value=0.0091 Score=56.03 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=59.1
Q ss_pred EEEEec-CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC----
Q 001236 27 LLKYGR-KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN---- 97 (1117)
Q Consensus 27 llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~---- 97 (1117)
|.|-+. .+.-+.|+|.|..+ .|.|++... ...|+|..+.-+..... .......||.|+..+
T Consensus 14 L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~--------~~~~~~~~f~i~~~~~~~~ 83 (118)
T 1v89_A 14 LKKQRSIVKNWQQRYFVLRAQ--QLYYYKDEEDTKPQGCMYLPGCTIKEIATN--------PEEAGKFVFEIIPASWDQN 83 (118)
T ss_dssp EEEECSSSSCEEEEEEEEETT--EEEEESSSSCCSCSEEECSTTEEEEEECCC--------SSCCCCCEEEEEESCCSSC
T ss_pred EEecCCCCCCccEEEEEEECC--EEEEEeCCCCCCceEEEECCCCEEEEcCcC--------cccCCcceEEEECCccccc
Confidence 445442 22237889999865 777765432 33566655432222111 012346799999842
Q ss_pred --CcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 98 --GKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 98 --~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
..+++-|.|.+++|++.|+..|+..+...
T Consensus 84 ~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 114 (118)
T 1v89_A 84 RMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114 (118)
T ss_dssp CSSCCCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcEEEEECCCHHHHHHHHHHHHHHHccC
Confidence 56899999999999999999999988644
No 38
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.0037 Score=59.61 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=59.2
Q ss_pred eEEEEec-CCcCeeEeEEEeCCCCEEEEecCCC------CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 26 QLLKYGR-KGKPKFYPFRLSNDETSLIWISSSG------ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 26 ~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~------~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
.|.|-+. .+.-+.|+|.|..+...|.|++... ...|+|..+. |.. ......+|.|+..+
T Consensus 13 ~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~-v~~------------~~~~~~~F~i~~~~- 78 (120)
T 2d9x_A 13 YLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAV-ISP------------SDEDSHTFTVNAAS- 78 (120)
T ss_dssp EEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCC-EEC------------CSSSSSCEEECCSS-
T ss_pred EEEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEE-EEe------------cCCCCCEEEEEcCC-
Confidence 3555543 2334889999987667888865432 2346665543 222 12345899998743
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.|++-|.|.+++|++.|+..|+..+..
T Consensus 79 ~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 79 GEQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp SCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999988843
No 39
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=96.56 E-value=0.006 Score=58.11 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=62.6
Q ss_pred HhcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEE
Q 001236 21 LKKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLI 94 (1117)
Q Consensus 21 L~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIi 94 (1117)
++.|- |.|-+. ++| +.|+|.|.. ..|.|++... ...|+|.++..|......+ + .....||.|+
T Consensus 15 ~~~G~-L~K~g~~~~~W-k~R~fvL~~--~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~-~------~~~~~~F~i~ 83 (125)
T 1eaz_A 15 IKAGY-CVKQGAVMKNW-KRRYFQLDE--NTIGYFKSELEKEPLRVIPLKEVHKVQECKQSD-I------MMRDNLFEIV 83 (125)
T ss_dssp SEEEE-EEEECTTTCCE-EEEEEEECS--SEEEEESSTTCSSCSEEEEGGGCCEEEECTTHH-H------HTCSSEEEEE
T ss_pred cEEEE-EEEeCCCCCCc-ceEEEEEeC--CEEEEEcCCCCCcceeEEEcccceEEeeccccc-c------CCcCCEEEEE
Confidence 34554 445443 334 778899965 4777865432 3467777776665422111 1 1236799999
Q ss_pred EcCCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 95 YNNGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 95 y~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
. ..|++-|.|.+++|++.|+..|+..+...
T Consensus 84 ~--~~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 84 T--TSRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp C--SSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred e--CCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 6 45899999999999999999999988544
No 40
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.53 E-value=0.011 Score=55.29 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=60.0
Q ss_pred EEEEec-CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcce
Q 001236 27 LLKYGR-KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRS 101 (1117)
Q Consensus 27 llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rt 101 (1117)
|.|-+. .+.-+.|+|.|..+ .|.|++... ...|+|..+..+.... .......||.|+..+ .|+
T Consensus 11 L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~~~~~~---------~~~~~~~~F~i~~~~-~r~ 78 (113)
T 1pls_A 11 LVKKGSVFNTWKPMWVVLLED--GIEFYKKKSDNSPKGMIPLKGSTLTSPCQ---------DFGKRMFVFKITTTK-QQD 78 (113)
T ss_dssp EEEESSSSSCCEEEEEEEETT--EEEEESSTTCSSCSEEEESSSCCEESSCC---------SSCCSSSEEEEEETT-TEE
T ss_pred EEEeCCCCCCceEEEEEEECC--EEEEEeCCCCCCcceEEEcCCCEEEEecC---------CCCCCccEEEEEcCC-CCE
Confidence 445543 22337889999875 577765442 3456776665543211 113345799998854 489
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 102 LDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 102 LDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
+-|.|.+++|++.|+..|+..+...
T Consensus 79 ~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 79 HFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988543
No 41
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.46 E-value=0.0094 Score=55.55 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=55.8
Q ss_pred hcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCCCc---ccccceee-ecccccCChhHhhhcCCCCCCceEEEEEcC
Q 001236 22 KKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGER---SLKLASVS-KIIPGQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1117)
Q Consensus 22 ~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~~~---~l~l~~I~-eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~ 97 (1117)
+.|-.. |...++| +.|+|.|..+ .|.+++..... .+.|.-.. .|..... .....||.|+..+
T Consensus 10 ~~G~L~-K~~~k~W-k~RwfvL~~~--~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~----------~~~~~~F~i~~~~ 75 (107)
T 2cof_A 10 TSSYLN-VLVNSQW-KSRWCSVRDN--HLHFYQDRNRSKVAQQPLSLVGCEVVPDPS----------PDHLYSFRILHKG 75 (107)
T ss_dssp TCCEEE-EEETTEE-EEEEEEECSS--CEEEECSSTTCSEEEEEECTTTCEEECCCB----------TTBSCEEEEEETT
T ss_pred EeEEEE-EecCCCc-ceEEEEEECC--EEEEEeCCcccCCCeeEEeccceEEEECCC----------CCCCeEEEEEeCC
Confidence 455544 4455555 7788999765 66776554322 22221111 1222211 2345799999853
Q ss_pred CcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
.|++-|.|.+++|++.|+..|+..+.
T Consensus 76 -~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 76 -EELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp -EEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 68999999999999999999997764
No 42
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=96.39 E-value=0.0093 Score=57.29 Aligned_cols=98 Identities=21% Similarity=0.286 Sum_probs=61.5
Q ss_pred hcCCeEEEEec-CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 22 KKGAQLLKYGR-KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 22 ~~Gt~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
+.|- |.|-+. .+.-+.|+|.|..+...|.|++... ...|+|..+.-+....... ........||.|+..
T Consensus 20 ~~G~-L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~-----~~~~~~~~~F~i~~~ 93 (129)
T 1x05_A 20 KQGC-LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSN-----GRKSEEENLFEIITA 93 (129)
T ss_dssp EEEE-EEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCC-----SSSCSSCSEEEEECT
T ss_pred EEEE-EEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCcc-----ccccCCCeEEEEEcC
Confidence 4443 445432 2223789999988777888875432 3346665432111111100 001124689999986
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
+ .+++.|.|.+++|++.|+..|+..+...
T Consensus 94 ~-~~~~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 94 D-EVHYFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp T-CCCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred C-CCEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence 4 4789999999999999999999988543
No 43
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.36 E-value=0.0081 Score=56.26 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=59.0
Q ss_pred hcCCeEEEEec-CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 22 KKGAQLLKYGR-KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 22 ~~Gt~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
+.|- |.|-+. .+.-+.|+|.|..+ .|.|++... ...|+|..+..|..-.+ ......||.|+..
T Consensus 10 ~~G~-L~K~~~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~---------~~~~~~~F~i~~~ 77 (115)
T 2dn6_A 10 KQGY-MMKKGHRRKNWTERWFVLKPN--IISYYVSEDLKDKKGDILLDENCCVESLPD---------KDGKKCLFLVKCF 77 (115)
T ss_dssp EEEE-EEEECTTSSCEEEEEEEECSS--CEEEESSTTCSSEEEEECCCTTCEEEEECC---------CTTCCSEEEEECS
T ss_pred EEEE-EEecCCCCCCcEEeEEEEECC--EEEEeCCCCCcccCcEEEecCcEEEEECCC---------CCCCeeEEEEEeC
Confidence 3443 455533 22337789999764 567765432 33567766554543211 1223579999764
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.|++-|.|.+++|++.|+..|+..+..
T Consensus 78 --~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 78 --DKTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp --SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998843
No 44
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=96.32 E-value=0.012 Score=54.58 Aligned_cols=89 Identities=20% Similarity=0.288 Sum_probs=56.7
Q ss_pred EEEEecC-CcCeeEeEEEeCCCCEEEEecCCC----Cccccccee--eecccccCChhHhhhcCCCCCCceEEEEEcCCc
Q 001236 27 LLKYGRK-GKPKFYPFRLSNDETSLIWISSSG----ERSLKLASV--SKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGK 99 (1117)
Q Consensus 27 llK~~r~-~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I--~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~ 99 (1117)
|.|-+.. +.-+.|+|.|..+...|.|++... ...|+|..+ .++...... .......||.|+..+ .
T Consensus 13 L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~-------~~~~~~~~F~i~~~~-~ 84 (109)
T 2i5f_A 13 LLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG-------RKSEEENLFEIITAD-E 84 (109)
T ss_dssp EEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC---------------CCSEEEEECTT-C
T ss_pred EEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCccc-------ccCCCceEEEEEeCC-C
Confidence 4554432 223789999998877888875432 334666553 222211000 011246799998864 4
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 100 RSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 100 rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+++-|.|.+++|++.|+..|+..+
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Confidence 779999999999999999998764
No 45
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.30 E-value=0.014 Score=55.11 Aligned_cols=90 Identities=23% Similarity=0.229 Sum_probs=54.5
Q ss_pred hcCCeEEEEec---CCcCeeEeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 22 KKGAQLLKYGR---KGKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 22 ~~Gt~llK~~r---~~kpk~r~f~Ls~d~~~l~W~s~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
+.|- |.|-+. +.| +.|+|.|.. ..|.+++....+.. ..| +..+.... ..+ ....||.|+. .
T Consensus 12 ~~G~-L~K~~~~~~k~W-kkR~fvL~~--~~L~yyk~~~~~~~--~~i--~l~~~~v~-----~~~-~~~~~F~I~~--~ 75 (114)
T 2da0_A 12 KKGY-LLKKSDGIRKVW-QRRKCSVKN--GILTISHATSNRQP--AKL--NLLTCQVK-----PNA-EDKKSFDLIS--H 75 (114)
T ss_dssp EEEE-EEEECSSSCCCE-EEEEEEEET--TEEEECCSSCCSCC--EEE--ETTTSEEE-----ECS-SSSSCEEEEE--T
T ss_pred EEEE-EEEeCCCCCCCc-eeEEEEEeC--CEEEEEcCCCCCCC--CEE--EeeeeEEE-----ECC-CCCCEEEEEc--C
Confidence 3443 455543 344 778999953 57778665432211 111 00111111 111 1235999996 4
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHccC
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALISSGQ 127 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li~~~~ 127 (1117)
.|++-|.|.+++|++.|+..|+..+...+
T Consensus 76 ~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 76 NRTYHFQAEDEQDYVAWISVLTNSKEEAL 104 (114)
T ss_dssp TEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999998885443
No 46
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.27 E-value=0.007 Score=58.09 Aligned_cols=101 Identities=23% Similarity=0.272 Sum_probs=62.6
Q ss_pred HhcCCeEEEEec-CCcCeeEeEEEeCCCCEEEEecCC-----CCcccccce--eeecccccCChhHhhhcCCCCCCceEE
Q 001236 21 LKKGAQLLKYGR-KGKPKFYPFRLSNDETSLIWISSS-----GERSLKLAS--VSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1117)
Q Consensus 21 L~~Gt~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~-----~~~~l~l~~--I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1117)
++.|- |.|-+. .+.-+.|+|.|..|...|.|++.. ....|+|.. |..+........ ........||.
T Consensus 19 ~~~G~-L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~----~~~~~~~~~F~ 93 (129)
T 1x1g_A 19 VKQGY-LAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTG----VKGNVQGNLFK 93 (129)
T ss_dssp EEEEE-EEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSS----CSSCCCSSCEE
T ss_pred EEEEE-EEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCccc----ccCCCCCceEE
Confidence 34554 445443 222378999999888889887653 123455553 333322100000 00011467999
Q ss_pred EEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHccC
Q 001236 93 LIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQ 127 (1117)
Q Consensus 93 Iiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~ 127 (1117)
|+..+ .+++-|.|.+++|++.|+..|+..+...+
T Consensus 94 I~~~~-~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 127 (129)
T 1x1g_A 94 VITKD-DTHYYIQASSKAERAEWIEAIKKLTSGPS 127 (129)
T ss_dssp ECCTT-CCCEEECCSSHHHHHHHHHHHHHHSSSSC
T ss_pred EEcCC-CCEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 98754 47899999999999999999998885543
No 47
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=96.18 E-value=0.014 Score=55.46 Aligned_cols=89 Identities=25% Similarity=0.276 Sum_probs=58.0
Q ss_pred cCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 23 KGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 23 ~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
.|- |.|-+. ++| +.|+|.|..+ .|.|++... ...|+|..+. |+... ......||.|+..
T Consensus 8 ~G~-L~K~g~~~~~W-k~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~-v~~~~----------~~~~~~~f~i~~~ 72 (127)
T 1fgy_A 8 EGW-LLKLGGRVKTW-KRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLS-IREVL----------DPRKPNCFELYNP 72 (127)
T ss_dssp EEE-EEEECSSSCCE-EEEEEEEETT--EEEEESSTTCSSCSEEEECTTCE-EEEEC----------CSSCSSEEEEECS
T ss_pred EeE-EEEECCCCCCe-EEEEEEEECC--EEEEeCCCCCCCcceEEECCceE-EEEcc----------CCCCCceEEEecC
Confidence 344 445542 334 7789999854 677865432 3356666553 22211 1234578888765
Q ss_pred CC--------------------cceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 97 NG--------------------KRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 97 ~~--------------------~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
+. .|++.|.|.+++|++.|+..|+..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 122 (127)
T 1fgy_A 73 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 122 (127)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 42 4899999999999999999999988543
No 48
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=96.17 E-value=0.014 Score=64.01 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred CCcCeeEeEEEeCC-----CCEEEEecCC---------CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 33 KGKPKFYPFRLSND-----ETSLIWISSS---------GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d-----~~~l~W~s~~---------~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
++| |.|+|.|..+ ...|.|++.. ....|+|.++..|.... ......+|.|+..
T Consensus 20 K~W-kkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~----------~~~~~~~F~I~t~-- 86 (264)
T 1qqg_A 20 KSM-HKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRA----------DSKNKHLVALYTR-- 86 (264)
T ss_dssp TTC-CEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEEC----------CSSCSSEEEEEES--
T ss_pred CCC-EeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEecc----------CCCCCcEEEEEEC--
Confidence 566 6788999888 5688886543 34467787776664321 1234579999975
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
.|++-|.|++++|++.|+..|+.++...
T Consensus 87 ~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 87 DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999999999988544
No 49
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=96.13 E-value=0.028 Score=51.65 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=55.0
Q ss_pred eEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC------CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC
Q 001236 26 QLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG------ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1117)
Q Consensus 26 ~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~------~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~ 97 (1117)
.|.|-+. ++| +.|+|.|.. ..|.|++... ...|+|..+ .|.. ...+..+|.|+..
T Consensus 4 ~L~K~g~~~k~W-k~R~fvL~~--~~L~Yy~~~~~~~~~~~g~i~L~~~-~v~~------------~~~~~~~F~i~~~- 66 (103)
T 3rcp_A 4 VLYKWTNYLTGW-QPRWFVLDN--GILSYYDSQDDVCKGSKGSIKMAVC-EIKV------------HSADNTRMELIIP- 66 (103)
T ss_dssp EEEEECCTTTCE-EEEEEEEET--TEEEEESSCC---CCCSCEEEGGGC-EEEC------------CTTCSSEEEEEET-
T ss_pred EEEEccCCCCCe-eceEEEEEC--CEEEEEecCCcccCCcccEEEeeee-EEEE------------cCCCCceEEEEeC-
Confidence 4566644 344 778999983 6777865543 234555322 1211 1123679999874
Q ss_pred CcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
+.|++.|.|.+++|++.|+..|+..+..
T Consensus 67 ~~r~~~l~a~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 67 GEQHFYMKAVNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp TTEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999876643
No 50
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.10 E-value=0.028 Score=52.23 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=58.7
Q ss_pred hcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEE
Q 001236 22 KKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 22 ~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
+.|- |.|-+. ++| +.|+|.|.. ..|.+++... ...|+|..+..+..... .....||.|+.
T Consensus 10 ~~G~-L~K~~~~~~~W-k~RwfvL~~--~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~----------~~~~~~F~i~~ 75 (109)
T 1wgq_A 10 MSGY-LYRSKGSKKPW-KHLWFVIKN--KVLYTYAASEDVAALESQPLLGFTVTLVKDE----------NSESKVFQLLH 75 (109)
T ss_dssp CEEE-EEEESSTTSCC-EEEEEEEET--TEEEEESCTTCSSCSEEEECSSEEEEECCCS----------SCSSSEEEEEE
T ss_pred EEEE-EEeCCCCCCCc-eeEEEEEeC--CEEEEECCCCcCccCceEECCCCEEEECCCC----------CCCCcEEEEEe
Confidence 3444 444433 344 788899984 5777765432 34566666654433211 12357999997
Q ss_pred cCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 96 NNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
. ..+++-|.|.+++|++.|+..|+..+.
T Consensus 76 ~-~~~~~~~~a~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 76 K-GMVFYVFKADDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp T-TEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred C-CCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 4 357899999999999999999998774
No 51
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=96.06 E-value=0.016 Score=52.40 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=51.2
Q ss_pred eEEEEec--CCcCeeEeEEEeCCCCEEEEecCCCCc------ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC
Q 001236 26 QLLKYGR--KGKPKFYPFRLSNDETSLIWISSSGER------SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1117)
Q Consensus 26 ~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~~~------~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~ 97 (1117)
.|.|-+. ++| +.|+|.|.. ..|.|+...... .+.|..+.-+ .......+|.|+..+
T Consensus 6 ~L~K~g~~~k~W-kkR~FvL~~--~~L~Yy~~~~~~~~~~~~~i~l~~~~~~-------------~~~~~~~~F~i~~~~ 69 (94)
T 2rsg_A 6 VLSKWTNYIHGW-QDRWVVLKN--NALSYYKSEDETEYGCRGSICLSKAVIT-------------PHDFDECRFDISVND 69 (94)
T ss_dssp EEEEESSSTTCE-EEEEEEEET--TEEEEESSTTGGGTCCSEEEETTTCEEE-------------ECSSCSSEEEEEETT
T ss_pred EEEEeCCCCCCc-eEEEEEEEC--CEEEEEEecccccccceeeEecceeeee-------------cCcccceeEEEEeCC
Confidence 4666643 455 778899975 467786554322 2222222111 112345799998854
Q ss_pred CcceEEEEeCCHHHHHHHHHHHHH
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1117)
|++.|.|.|++|++.|+..|+.
T Consensus 70 --r~~~l~A~s~~e~~~Wi~aLq~ 91 (94)
T 2rsg_A 70 --SVWYLRAQDPDHRQQWIDAIEQ 91 (94)
T ss_dssp --EEEEEECCSSCCTHHHHHHHHH
T ss_pred --eEEEEECCCHHHHHHHHHHHHh
Confidence 8999999999999999999874
No 52
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=95.94 E-value=0.025 Score=55.88 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=56.5
Q ss_pred CcCeeEeEEEeCCC---CEEEEecCCC-----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEE
Q 001236 34 GKPKFYPFRLSNDE---TSLIWISSSG-----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLI 105 (1117)
Q Consensus 34 ~kpk~r~f~Ls~d~---~~l~W~s~~~-----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLv 105 (1117)
+| +.|+|.|..+. ..|.|+.... ...|.|..+..|... ......||.|+..+ .|++-|.
T Consensus 39 ~W-k~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~-----------~~~~~~~F~i~~~~-~r~~~l~ 105 (150)
T 1wg7_A 39 SF-KRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQN-----------NKVRRFAFELKMQD-KSSYLLA 105 (150)
T ss_dssp SC-EEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCC-----------CSSCTTEEEEECSS-SCEEEEE
T ss_pred Ce-eEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecC-----------CCCCceEEEEEeCC-CcEEEEE
Confidence 44 77899998752 2777755432 335666665544321 12345799999864 4899999
Q ss_pred eCCHHHHHHHHHHHHHHHHc
Q 001236 106 CKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 106 a~~~~ea~~Wv~GL~~Li~~ 125 (1117)
|.+++|++.|+..|+.++..
T Consensus 106 A~s~~e~~~Wi~al~~ai~~ 125 (150)
T 1wg7_A 106 ADSEVEMEEWITILNKILQL 125 (150)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998843
No 53
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=95.93 E-value=0.035 Score=53.80 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=58.2
Q ss_pred CeEEEEec--CCcCeeEeEEEeCCCC-EEEEecC-----C---CCcccccceeeecccccCChhHhhhcCCCCCCceEEE
Q 001236 25 AQLLKYGR--KGKPKFYPFRLSNDET-SLIWISS-----S---GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSL 93 (1117)
Q Consensus 25 t~llK~~r--~~kpk~r~f~Ls~d~~-~l~W~s~-----~---~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSI 93 (1117)
-.|.|-++ .+.=|.|+|.|+.+.. .|.+++. . ....|.|..+..|....... ......||.|
T Consensus 19 G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~-------~~~~~~~F~i 91 (126)
T 1v5p_A 19 GFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQ-------KPKTPFCFVI 91 (126)
T ss_dssp CCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTT-------SCSCSSEEEE
T ss_pred EEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCccc-------CCCCCEEEEE
Confidence 35777752 2223889999987644 4545333 1 13457777666665543111 1234578955
Q ss_pred EEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 94 IYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 94 iy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
....|+.-|.|.+++|++.||..|+..+
T Consensus 92 --~t~~r~y~l~A~s~~e~~~Wi~al~~a~ 119 (126)
T 1v5p_A 92 --NALSQRYFLQANDQKDLKDWVEALNQAS 119 (126)
T ss_dssp --ECSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred --ECCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3457999999999999999999998665
No 54
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=95.81 E-value=0.047 Score=52.64 Aligned_cols=74 Identities=26% Similarity=0.460 Sum_probs=52.5
Q ss_pred CeeEeEEEeCCCCEEEEecCCCCc----ccccc--eeeecccccCChhHhhhcCCCCCCceEEEEEcCC------cceEE
Q 001236 36 PKFYPFRLSNDETSLIWISSSGER----SLKLA--SVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG------KRSLD 103 (1117)
Q Consensus 36 pk~r~f~Ls~d~~~l~W~s~~~~~----~l~l~--~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~------~rtLD 103 (1117)
-|.|.|.|..+ +|.|++...++ .|+|. .|++|..|.. ....||.|++.++ .+++.
T Consensus 30 wk~rWFVLt~~--~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~-----------~rk~~F~l~~~d~r~v~~~h~~y~ 96 (125)
T 1dyn_A 30 SKEYWFVLTAE--NLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFM-----------SSKHIFALFNTEQRNVYKDYRQLE 96 (125)
T ss_dssp SEEEEEEEESS--EEEEESSTTCSCEEEEEECTTEEEEECCSCSS-----------SSCEEEEEEETTSSCSSTTCSSEE
T ss_pred ceeeEEEEecc--ceeeecCCcccccceEEECCCceEeccCCCCC-----------CCceEEEEECCCCccccccceEEE
Confidence 47888999875 56786654433 36664 4456655521 1257999998653 47999
Q ss_pred EEeCCHHHHHHHHHHH-HHH
Q 001236 104 LICKDKVEAEVWIAGL-KAL 122 (1117)
Q Consensus 104 Lva~~~~ea~~Wv~GL-~~L 122 (1117)
|.|.|.+|.+.|+..| |+=
T Consensus 97 LsA~t~ee~~~Wi~s~~ra~ 116 (125)
T 1dyn_A 97 LACETQEEVDSWKASFLRAG 116 (125)
T ss_dssp EEESSHHHHHHHHHHHHHTT
T ss_pred EeCCCHHHHHHHHHHHHhCc
Confidence 9999999999999987 543
No 55
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=95.77 E-value=0.026 Score=54.31 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=57.7
Q ss_pred hcCCeEEEEec-CCcCeeEeEEEeCCCCEEEEecCC-------------CCcccccceeeecccccCChhHhhhcCCCCC
Q 001236 22 KKGAQLLKYGR-KGKPKFYPFRLSNDETSLIWISSS-------------GERSLKLASVSKIIPGQRTAVFQRYLRPEKD 87 (1117)
Q Consensus 22 ~~Gt~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~-------------~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~ 87 (1117)
+.| .|.|-+. .+.-+.|+|.|..+ .|.|++.. ....|+|.... |....+ .....
T Consensus 14 k~G-~L~K~g~~~k~Wk~RwfVL~~~--~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~-v~~~~~--------~~~~k 81 (124)
T 2w2x_D 14 QQG-ELYMWDSIDQKWTRHFCAIADA--KLSFSDDIEQTMEEDNPLGSLCRGILDLNTYN-VVKAPQ--------GKNQK 81 (124)
T ss_dssp CEE-EEEEEETTTTEEEEEEEEEETT--EEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEE-EEECTT--------CBTTB
T ss_pred eeE-EEEEECCCCCCceEeEEEEECC--EEEEEcccccccccccccCCccccEEECCCCE-EEEccC--------CcCCC
Confidence 444 4555543 33448899999855 47775432 13345554443 222211 01223
Q ss_pred CceEEEEEcCC-cceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 88 YLSFSLIYNNG-KRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 88 ~~~FSIiy~~~-~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
..+|.|.+.+. .+++.|.|.+.+|++.|+..|+..+.
T Consensus 82 ~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~ 119 (124)
T 2w2x_D 82 SFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITW 119 (124)
T ss_dssp SEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred CEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence 46999998754 68899999999999999999998773
No 56
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=95.51 E-value=0.032 Score=53.26 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=59.2
Q ss_pred hcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEEEE
Q 001236 22 KKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 22 ~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
+.|- |.|-+. ++| +.|+|.|..+. .|.|++.... ..|+|..+.-+.. .+ .........||.|+.
T Consensus 10 ~~G~-L~K~g~~~k~W-kkRwfvL~~~~-~L~yy~~~~~~~~~g~i~L~~~~~~~~----~~---~~~~~~~~~~F~I~~ 79 (125)
T 1unq_A 10 KEGW-LHKRGEYIKTW-RPRYFLLKNDG-TFIGYKERPQDVDQREAPLNNFSVAQC----QL---MKTERPRPNTFIIRC 79 (125)
T ss_dssp EEEE-EEEECSSSCCE-EEEEEEEETTS-EEEEESSCCCSHHHHTSCSEEEECTTC----EE---EEECSSSTTEEEEEE
T ss_pred EEee-EEeccCCccCc-cCcEEEEecCC-EEEEEeCCCCCCCCceeEccceeEEee----ee---cccccCCCCEEEEEe
Confidence 3443 455543 344 78899998664 5556544332 2456665542211 00 001123457999987
Q ss_pred c--CCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 96 N--NGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 96 ~--~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
. ...+++-|.|.+++|++.|+..|+..+..
T Consensus 80 ~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 80 LQWTTVIERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4 34688999999999999999999998843
No 57
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=95.40 E-value=0.057 Score=49.51 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=52.0
Q ss_pred eeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEA 112 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea 112 (1117)
+.|+|.|.. ..|.|++... ...|+|..+.-+..-. .........||.|+..+ .+++-|.|.+++|+
T Consensus 24 k~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~-------~~~~~~~~~~F~i~~~~-~r~~~l~a~s~~e~ 93 (108)
T 1u5d_A 24 QKRWCVVSR--GLFYYYANEKSKQPKGTFLIKGYSVRMAPH-------LRRDSKKESCFELTSQD-RRTYEFTATSPAEA 93 (108)
T ss_dssp EEEEEEEET--TEEEEESSTTCSSCSEEEECTTCEEEECGG-------GCSSGGGGGEEEEECSS-SCCEEEECSSHHHH
T ss_pred eeeEEEEeC--CEEEEecCCCCCCCCEEEEecceEEEeCCc-------cccccCCcceEEEEcCC-CcEEEEECCCHHHH
Confidence 778999974 4677765432 3346665554221100 00112235799998643 48999999999999
Q ss_pred HHHHHHHHHHHH
Q 001236 113 EVWIAGLKALIS 124 (1117)
Q Consensus 113 ~~Wv~GL~~Li~ 124 (1117)
+.|+..|+..+.
T Consensus 94 ~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 94 RDWVDQISFLLK 105 (108)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
No 58
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.32 E-value=0.073 Score=49.75 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=55.8
Q ss_pred hcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC----Ccccccceee--ecccccCChhHhhhcCCCCCCceEEE
Q 001236 22 KKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVS--KIIPGQRTAVFQRYLRPEKDYLSFSL 93 (1117)
Q Consensus 22 ~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~--eI~~G~~t~~f~r~~~~~~~~~~FSI 93 (1117)
+.|- |.|-+. ...-+.|+|.|.. ..|.|++... ...|+|..+. .+... .......||.|
T Consensus 13 ~~G~-L~K~~~~~~~~Wk~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~----------~~~~~~~~F~i 79 (117)
T 2d9y_A 13 KAGW-LFKQASSGVKQWNKRWFVLVD--RCLFYYKDEKEESILGSIPLLSFRVAAVQPS----------DNISRKHTFKA 79 (117)
T ss_dssp EEEE-EEEECTTSSSCEEEEEEEEET--TEEEEESSTTCCSCCEEEECSSCEEEECCTT----------TTCCCSSEEEE
T ss_pred EEEE-EEEeCCCCCCCceEEEEEECC--CEEEEECCCCCCCcCCEEEeCCeEEEEcCcc----------ccCCCccEEEE
Confidence 4444 445542 2223778999964 5777765432 2345665543 22110 11234579999
Q ss_pred EEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 94 IYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 94 iy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
+.. ..+++-|.|.+++|++.|+..|+..+
T Consensus 80 ~~~-~~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 80 EHA-GVRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp ECS-SSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred EcC-CCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 764 35899999999999999999998776
No 59
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=95.30 E-value=0.029 Score=53.73 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=56.4
Q ss_pred CcCeeEeEEEeCCCCEEEEecC-------CCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC----CcceE
Q 001236 34 GKPKFYPFRLSNDETSLIWISS-------SGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN----GKRSL 102 (1117)
Q Consensus 34 ~kpk~r~f~Ls~d~~~l~W~s~-------~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~----~~rtL 102 (1117)
+| +.|+|.|+.. .|.+++. .....|+|+.+..|+.=...++... ......+.|.|+|.+ ..++|
T Consensus 19 ~W-kkr~~vL~~~--kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~--~~~~~p~iF~I~~~~~~~~~~~~l 93 (117)
T 2rov_A 19 GW-VKKYVIVSSK--KILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRA--DAKEIPRIFQILYANEGISSAKNL 93 (117)
T ss_dssp CC-CEEEEEEETT--EEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSS--CTTTGGGEEEEEECSSSSTTCEEE
T ss_pred Cc-EEEEEEEECC--EEEEEECCCCcccCCceEEEECcccEEEEEccccccccc--ccccCCcEEEEEeCCCCCCCCcEE
Confidence 45 6788999755 4445332 2345677766666554333322211 112224789999963 35899
Q ss_pred EEEeCCHHHHHHHHHHHHHHHH
Q 001236 103 DLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 103 DLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
-|.|++.+|.+.||..|+..|.
T Consensus 94 ~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 94 LLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEeCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999997763
No 60
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=95.29 E-value=0.037 Score=51.60 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=53.7
Q ss_pred EEEEec-CCcCeeEeEEEeCCCCEEEEecCCCC----ccccccee-eecccccCChhHhhhcCCCCCCceEEEEEcCCcc
Q 001236 27 LLKYGR-KGKPKFYPFRLSNDETSLIWISSSGE----RSLKLASV-SKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKR 100 (1117)
Q Consensus 27 llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I-~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~r 100 (1117)
|.|-+. .+.-+.|+|.|..+ ..|.|++.... ..|++... ..|..+....... .........||.|+..+ .|
T Consensus 11 L~K~g~~~k~WkkR~fvL~~~-~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~-~~~~~~~~~~F~i~~~~-~r 87 (112)
T 3aj4_A 11 LLRQSTILKRWKKNWFDLWSD-GHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQ-PPDGKSKDCMLQIVCRD-GK 87 (112)
T ss_dssp EEEECSSSCCEEEEEEEECTT-SEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCC-CSTTCCGGGEEEEEETT-SC
T ss_pred EEeeCCCCCCeeceEEEEeeC-CEEEEEcCCCCCCCCccccccccceeecccccccccC-CCCCCCcCcEEEEEecC-Cc
Confidence 455543 22237789999644 46777655432 22334321 1222222111000 00011125699999753 58
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHH
Q 001236 101 SLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 101 tLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
++-|.|.+++|++.|+..|+..+
T Consensus 88 ~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 88 TISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 61
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=95.26 E-value=0.1 Score=52.15 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=59.4
Q ss_pred HHhcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEE
Q 001236 20 ALKKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSL 93 (1117)
Q Consensus 20 ~L~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSI 93 (1117)
.++.|- |.|-+. +.| |.|+|.|..+ .|.|++.... ..|+|..+..+..-. . ......||.|
T Consensus 18 v~keG~-L~Kkg~~~k~W-krRWFvLk~~--~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~-~--------~~~~~~~F~I 84 (149)
T 1x1f_A 18 LYFEGF-LLIKRSGYREY-EHYWTELRGT--TLFFYTDKKSIIYVDKLDIVDLTCLTEQN-S--------TEKNCAKFTL 84 (149)
T ss_dssp EEEEEE-EEEECTTCCSC-EEEEEEEETT--EEEEESCSSCSSCSEECCCSSCCEEEECC-C--------TTSCCCEEEE
T ss_pred ccEEEE-EEEeCCCCCCc-eeEEEEEcCC--EEEEEeCCCccccCcEEECCCceEEeecc-C--------CCCcCcEEEE
Confidence 345554 555543 334 7788999765 7778665432 345665554331100 0 0123579999
Q ss_pred EEcCCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 94 IYNNGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 94 iy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
+.. .|+.-|.|++.+|++.|+..|+.++...
T Consensus 85 ~t~--~r~~~f~A~s~ee~~eWi~aI~~v~~~~ 115 (149)
T 1x1f_A 85 VLP--KEEVQLKTENTESGEEWRGFILTVTELS 115 (149)
T ss_dssp ECS--SCCEEEECSSHHHHHHHHHHHHHHHHSS
T ss_pred EcC--CCEEEEEcCCHHHHHHHHHHHHHHHccc
Confidence 874 4888999999999999999999988643
No 62
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=95.22 E-value=0.054 Score=57.84 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=54.3
Q ss_pred eeEeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEA 112 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea 112 (1117)
+.|+|.|.. ..|.|++.... ..|+|..+..|.... ....||.|+.. .|++.|.|.+++|+
T Consensus 80 kkRwfvL~~--~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~------------~k~~~F~I~t~--~r~~~l~A~s~~e~ 143 (228)
T 3tfm_A 80 KKRWFVLRQ--SKLMYFENDSEEKLKGTVEVRSAKEIIDNT------------NKENGIDIIMA--DRTFHLIAESPEDA 143 (228)
T ss_dssp EEEEEEECS--SEEEEESSTTCCSEEEEEEGGGCSEEEEET------------TTTSEEEEECS--SCEEEEECSSHHHH
T ss_pred eEEEEEEeC--CEEEEEeCCCCcceeEEEEcCCCEEeccCC------------CCCcEEEEEcC--CcEEEEEcCCHHHH
Confidence 788999974 57778665432 356777665554321 23579999774 58999999999999
Q ss_pred HHHHHHHHHHHHc
Q 001236 113 EVWIAGLKALISS 125 (1117)
Q Consensus 113 ~~Wv~GL~~Li~~ 125 (1117)
+.|+..|+..+..
T Consensus 144 ~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 144 SQWFSVLSQVHSS 156 (228)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999953
No 63
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=95.17 E-value=0.085 Score=51.95 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=52.4
Q ss_pred eeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEA 112 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea 112 (1117)
+.|+|.|.. ..|.|++... ...|.|..+.-+ ..... ........||.|+..+ .|++-|.|.+.+|+
T Consensus 38 kkR~fvL~~--~~L~yyk~~~~~~~~g~i~L~~~~v~-~~~~~------~~~~~~~~~F~I~~~~-~r~~~l~a~s~~e~ 107 (148)
T 1u5f_A 38 QKRWCALSK--TVFYYYGSDKDKQQKGEFAIDGYDVR-MNNTL------RKDGKKDCCFEICAPD-KRIYQFTAASPKDA 107 (148)
T ss_dssp EEEEEEEET--TEEEEESSTTCSSCSEEEECTTCEEE-ECTTS------CSSTTGGGEEEEECTT-SCEEEEECSSHHHH
T ss_pred eeEEEEEEC--CEEEEEcCCCCcccceEEEcCCcEEE-ECCCc------ccCCCCccEEEEECCC-CcEEEEECCCHHHH
Confidence 778999974 4777765543 334666555322 11100 0112234799998843 48999999999999
Q ss_pred HHHHHHHHHHHHc
Q 001236 113 EVWIAGLKALISS 125 (1117)
Q Consensus 113 ~~Wv~GL~~Li~~ 125 (1117)
+.|+..|+..+..
T Consensus 108 ~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 108 EEWVQQLKFILQD 120 (148)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988843
No 64
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=95.12 E-value=0.082 Score=55.86 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred CcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCH
Q 001236 34 GKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDK 109 (1117)
Q Consensus 34 ~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~ 109 (1117)
+| +.|+|.|.. ..|.|++... ...|+|..+.-|..-.. ........||.|+..+ .|++-|.|.++
T Consensus 125 ~W-kkRwfVL~~--~~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~-------~~~~~k~~~F~I~t~~-~r~~~l~A~s~ 193 (211)
T 1u5e_A 125 EW-QKRWCALSK--TVFYYYGSDKDKQQKGEFAIDGYDVRMNNTL-------RKDGKKDCCFEICAPD-KRIYQFTAASP 193 (211)
T ss_dssp CC-EEEEEEEET--TEEEEESSTTCSSCSEEEECTTCEEEECGGG-------CSSTTGGGEEEEECSS-SCEEEEECSSH
T ss_pred Cc-EeEEEEEEC--CEEEEEcCCCCccceEEEEeCCcEEEEcCCc-------cccCCCCCEEEEEcCC-CCEEEEEcCCH
Confidence 55 778899974 4777865543 34566666655432100 0112235799998843 58999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 001236 110 VEAEVWIAGLKALIS 124 (1117)
Q Consensus 110 ~ea~~Wv~GL~~Li~ 124 (1117)
+|++.|+..|+..|.
T Consensus 194 ~e~~~Wi~aL~~ai~ 208 (211)
T 1u5e_A 194 KDAEEWVQQLKFILQ 208 (211)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998874
No 65
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=95.05 E-value=0.076 Score=53.50 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=49.4
Q ss_pred CCcCeeEeEEEeCCCCEEEEecCCCC------ccccccee---eecccccCChhHhhhcCCCCCCceEEEEEcCCcceEE
Q 001236 33 KGKPKFYPFRLSNDETSLIWISSSGE------RSLKLASV---SKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLD 103 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d~~~l~W~s~~~~------~~l~l~~I---~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLD 103 (1117)
++| +.|+|.|..+ .|.|++..+. ..|+|..+ .+|.. .......||.|+..+ +++-
T Consensus 27 k~W-kkRwfvL~~~--~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~-----------~~~~~~~~F~I~t~~--r~~~ 90 (168)
T 2j59_M 27 RPW-KQMYVVLRGH--SLYLYKDKREQTTPSEEEQPISVNACLIDISY-----------SETKRKNVFRLTTSD--CECL 90 (168)
T ss_dssp -CC-EEEEEEEETT--EEEEESCTTCC--------CEECSSCEEEECS-----------SSCSCSSEEEEECSS--CEEE
T ss_pred CCc-eEEEEEEeCC--EEEEEECCcccccccCCceEecccceEEEecc-----------ccCCCCCEEEEEeCC--ceEE
Confidence 344 7788999754 6777655432 23344331 11111 113345799999765 8899
Q ss_pred EEeCCHHHHHHHHHHHHHHHH
Q 001236 104 LICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 104 Lva~~~~ea~~Wv~GL~~Li~ 124 (1117)
|.|.+++|++.|+..|+..+.
T Consensus 91 l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 91 FQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp EECSSHHHHHHHHHHHHHHCC
T ss_pred EEcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988773
No 66
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=95.02 E-value=0.062 Score=51.70 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=52.3
Q ss_pred eeEeEEEeCCCCEEEEecC-------CCCcccccceee--ecccccCChhHhhhcCCCCCCceEEEEEc--CC-------
Q 001236 37 KFYPFRLSNDETSLIWISS-------SGERSLKLASVS--KIIPGQRTAVFQRYLRPEKDYLSFSLIYN--NG------- 98 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~-------~~~~~l~l~~I~--eI~~G~~t~~f~r~~~~~~~~~~FSIiy~--~~------- 98 (1117)
+.|+|.|..+ .|.+++. .+...|+|..+. +|....+. ......||.|+.. .+
T Consensus 24 krRwfvL~~~--~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~--------~~~~~~~F~i~~~~p~~~~~~~~~ 93 (134)
T 2y7b_A 24 HRRWCVLSGN--CISYWTYPDDEKRKNPIGRINLANCTSRQIEPANRE--------FCARRNTFELITVRPQREDDRETL 93 (134)
T ss_dssp EEEEEEEETT--EEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTT--------TCCCTTEEEEEEEEECCTTCCCCS
T ss_pred EEEEEEEECC--EEEEECCCCcccccCceEEEEhhhCccccccccchh--------hccCCCEEEEEecCCCcccccccc
Confidence 7889999765 7777652 234456676643 24332110 0123579999873 11
Q ss_pred ---------cceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 99 ---------KRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 99 ---------~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
.+++-|.|.+++|++.|+..|+..+.
T Consensus 94 ~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 94 VSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp SEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 25799999999999999999998884
No 67
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=94.71 E-value=0.16 Score=47.96 Aligned_cols=77 Identities=23% Similarity=0.248 Sum_probs=50.5
Q ss_pred eeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEA 112 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea 112 (1117)
+.|+|.|. ...|.|++... ...|.|..+. |...... .......||.|+.. +.+++-|.|.+++|+
T Consensus 29 kkR~fvL~--~~~L~yy~~~~~~~~~g~i~l~~~~-v~~~~~~-------~~~~~~~~f~i~~~-~~r~~~l~a~s~~e~ 97 (123)
T 1upq_A 29 KRRWFVLS--GHCLFYYKDSREESVLGSVLLPSYN-IRPDGPG-------APRGRRFTFTAEHP-GMRTYVLAADTLEDL 97 (123)
T ss_dssp EEEEEEEE--TTEEEEESSTTCCSCCEEEEGGGCE-EEECCSS-------CTTSSSSEEEEECT-TSCCEEEECSSHHHH
T ss_pred eeEEEEEe--CCEEEEECCCCCcccceEEECCCCE-EEECCCC-------ccCCCcEEEEEECC-CCeEEEEECCCHHHH
Confidence 77899996 35777765432 2345554432 2221110 11234578888764 348999999999999
Q ss_pred HHHHHHHHHHHH
Q 001236 113 EVWIAGLKALIS 124 (1117)
Q Consensus 113 ~~Wv~GL~~Li~ 124 (1117)
+.|+..|+..+.
T Consensus 98 ~~Wi~al~~a~~ 109 (123)
T 1upq_A 98 RGWLRALGRASR 109 (123)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998883
No 68
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.67 E-value=7.6 Score=44.03 Aligned_cols=241 Identities=10% Similarity=0.017 Sum_probs=131.5
Q ss_pred CCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCC
Q 001236 283 LDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 283 ~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n 362 (1117)
..|..++......+.-..||.|..|-....-. ...+. .....|..++......+....||.|+.|-..
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 35777887777777778899999996543111 01111 1234677888777777888899999999543
Q ss_pred CCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccc
Q 001236 363 THNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGL 442 (1117)
Q Consensus 363 ~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~ 442 (1117)
.. . . ......+. .....|..++....+.+....+|.|..|-....-. ...+.. ...
T Consensus 242 ~~--~------~--~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~-~~~ 297 (435)
T 1p22_A 242 SP--T------D--ITLRRVLV--GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-----------VRTLNG-HKR 297 (435)
T ss_dssp SS--S------C--CEEEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSS
T ss_pred CC--C------C--ceeeeEec--CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE-----------EEEEcC-CCC
Confidence 10 0 0 00011111 12335777777777777778899999996433110 011111 112
Q ss_pred eEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEec
Q 001236 443 RTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTT 522 (1117)
Q Consensus 443 kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~ 522 (1117)
.|..++......++- ..+|.|..|-..... +..........|..++....+.+.-..
T Consensus 298 ~v~~~~~~~~~l~~g-----------~~dg~i~iwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~l~sg~~ 354 (435)
T 1p22_A 298 GIACLQYRDRLVVSG-----------SSDNTIRLWDIECGA------------CLRVLEGHEELVRCIRFDNKRIVSGAY 354 (435)
T ss_dssp CEEEEEEETTEEEEE-----------ETTSCEEEEETTTCC------------EEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred cEEEEEeCCCEEEEE-----------eCCCeEEEEECCCCC------------EEEEEeCCcCcEEEEEecCCEEEEEeC
Confidence 344444433322222 468899999653211 111111123357777777777777788
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCC
Q 001236 523 SGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 523 dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~ 585 (1117)
+|.|..|-.......... ....+.. ........|..++....+.+.-..||.|..|-...
T Consensus 355 dg~i~vwd~~~~~~~~~~--~~~~~~~-~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAP--AGTLCLR-TLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp TSCEEEEEHHHHTSTTSC--TTTTEEE-EECCCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred CCcEEEEECCCCCCcccc--ccchhee-eccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 999999964321111100 0000111 11122345667776555556666799999997654
No 69
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=94.45 E-value=0.099 Score=49.69 Aligned_cols=41 Identities=27% Similarity=0.389 Sum_probs=33.9
Q ss_pred CCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHccC
Q 001236 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQ 127 (1117)
Q Consensus 86 ~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~ 127 (1117)
....||.|+..+ .++.-|.|.+++|++.|+..|+..+...+
T Consensus 80 ~r~~~F~i~~~~-~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~ 120 (123)
T 1wjm_A 80 KRKHVFKLGLQD-GKEYLFQAKDEAEMSSWLRVVNAAIASGP 120 (123)
T ss_dssp SCSSEEEEECSS-SCEEEEECSSHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEEEcC-CcEEEEECCCHHHHHHHHHHHHHHHhccC
Confidence 346799998754 37888999999999999999999886543
No 70
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=94.39 E-value=0.091 Score=50.01 Aligned_cols=91 Identities=20% Similarity=0.163 Sum_probs=55.6
Q ss_pred HhcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEEE
Q 001236 21 LKKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLI 94 (1117)
Q Consensus 21 L~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIi 94 (1117)
++.|-. .|-+. .+.-+.|+|.|.. ..|.|++.... ..|+|..+. |..-.. ........||.|+
T Consensus 22 ~~~G~L-~K~~~~~~~~Wk~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~-v~~~~~-------~~~~~~~~~F~i~ 90 (128)
T 2dkp_A 22 VRRGWL-YKQDSTGMKLWKKRWFVLSD--LCLFYYRDEKEEGILGSILLPSFQ-IALLTS-------EDHINRKYAFKAA 90 (128)
T ss_dssp CEEEEE-EEECCSSSCCEEEEEEEEET--TEEEEESSTTCCSEEEEECGGGSE-EEECCG-------GGCCSSCSEEEEE
T ss_pred EEEEEE-EEeCCCCCCCceeEEEEEeC--CEEEEECCCCCcccceEEEcCceE-EEEcCC-------cccCCCCeEEEEE
Confidence 355654 45433 2223778899964 57778654432 235554332 111000 0112345799998
Q ss_pred EcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 95 YNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 95 y~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
..+ .|++-|.|.+++|++.|+..|+..+
T Consensus 91 ~~~-~r~~~l~a~s~~e~~~Wi~al~~a~ 118 (128)
T 2dkp_A 91 HPN-MRTYYFCTDTGKEMELWMKAMLDAA 118 (128)
T ss_dssp CSS-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCC-CCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 753 4889999999999999999998665
No 71
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=94.31 E-value=0.22 Score=48.43 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=49.6
Q ss_pred eeEeEEEeCCCCEEEEecCCCC----cccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC--------------
Q 001236 37 KFYPFRLSNDETSLIWISSSGE----RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG-------------- 98 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~~----~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~-------------- 98 (1117)
+.|+|.|.+ ..|.|++..++ ..|+|.... |.. ........||.|+....
T Consensus 24 krRWfVLk~--~~L~yyk~~~~~~p~G~I~L~~~~-v~~----------~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~ 90 (130)
T 1v88_A 24 TKLWCVLKP--GVLLIYKTQKNGQWVGTVLLNACE-IIE----------RPSKKDGFCFKLFHPLEQSIWAVKGPKGEAV 90 (130)
T ss_dssp EEEEEEEET--TEEEEESCSSSCCCCEEEECSSCE-ECC----------CCTTTSSCEEEEECTTCCCCSCSSCTTSCSC
T ss_pred eEEEEEEEC--CEEEEECCCCCCCceEEEEcCCCE-EEE----------CCCCCCCeEEEEEcCCccccccccCCccccc
Confidence 778899975 46777655432 245554332 110 01123347999987432
Q ss_pred --------cceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 99 --------KRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 99 --------~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.+++-|.|.+++|++.|+..|+..+..
T Consensus 91 g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~ 125 (130)
T 1v88_A 91 GSITQPLPSSYLIIRATSESDGRCWMDALELALKS 125 (130)
T ss_dssp SCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred ccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 245889999999999999999988843
No 72
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.30 E-value=0.2 Score=47.20 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=55.3
Q ss_pred hcCCeEEEEe--cCCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEE
Q 001236 22 KKGAQLLKYG--RKGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 22 ~~Gt~llK~~--r~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
+.|- |.|-+ ..+.-+.|+|.|.. ..|.|++... ...|+|..+. |..-.. ........||.|+.
T Consensus 24 ~~G~-L~K~~~~~~~~Wk~R~fvL~~--~~L~yy~~~~~~~~~g~i~L~~~~-v~~~~~-------~~~~~~~~~F~i~~ 92 (122)
T 2yry_A 24 KAGW-LFKQASSGVKQWNKRWFVLVD--RCLFYYKDEKEESILGSIPLLSFR-VAAVQP-------SDNISRKHTFKAEH 92 (122)
T ss_dssp EEEE-EEEECCSSSCCEEEEEEEEET--TEEEEESSTTCCSCCEEEESTTCC-CEECCT-------TCSCSSSSEEEEEC
T ss_pred EEEE-EEEECCCCCCCcEEEEEEEeC--CEEEEECCCCCCCcccEEEcCCCE-EEEcCc-------cccCCcccEEEEec
Confidence 4554 44543 22223778999964 5777865432 2345555432 211000 01123357999975
Q ss_pred cCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 96 NNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
. ..+++-|.|++++|++.|+..|+..+
T Consensus 93 ~-~~r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 93 A-GVRTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp S-SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred C-CCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 4 35899999999999999999998765
No 73
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.24 E-value=3.2 Score=51.31 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=12.3
Q ss_pred CcceeeecCCeEEEEeCC
Q 001236 567 YHVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 567 ~Ht~aLT~dG~Vy~WG~n 584 (1117)
.|+++...+|+||++|-+
T Consensus 657 gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp SCEEECC---CEEEECCE
T ss_pred eeeEEEeCCCEEEEEeCC
Confidence 488888888899999965
No 74
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.05 E-value=8.8 Score=46.75 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=39.1
Q ss_pred CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEE----eCCCcc-eeeecCCeEEEEeCCCCCC
Q 001236 514 HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIA----CGAYHV-AVLTSRNEVYTWGKGANGR 588 (1117)
Q Consensus 514 ~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is----~G~~Ht-~aLT~dG~Vy~WG~n~~GQ 588 (1117)
..|++++..+|+||++|....+...........+.... +.......+. .-.+|+ +++..+|+||+.|-+.+|.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~yd--p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYV--PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEE--GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEc--CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 35777777899999999755443111111111111111 1112222222 124565 5566899999999876653
No 75
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=93.83 E-value=0.23 Score=57.26 Aligned_cols=95 Identities=12% Similarity=0.190 Sum_probs=60.9
Q ss_pred CeEEEEecCC--cCeeEeEEEeCCCCEEEEecCCC----Ccccccceeeec---ccccCChhHhhhcCCCCCCceEEEEE
Q 001236 25 AQLLKYGRKG--KPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKI---IPGQRTAVFQRYLRPEKDYLSFSLIY 95 (1117)
Q Consensus 25 t~llK~~r~~--kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI---~~G~~t~~f~r~~~~~~~~~~FSIiy 95 (1117)
..|.|-+.+. .=|.|+|.|. ...|.|++... ...|.|..+..+ ..+..... ....-..||.|+.
T Consensus 273 G~L~K~g~~~~k~WKkRwFVL~--~~~L~YYk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~-----~~~~~~~~F~I~t 345 (386)
T 3lju_X 273 GYMEKTGPKQTEGFRKRWFTMD--DRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPST-----QGHHWPHGITIVT 345 (386)
T ss_dssp EEEEECCTTSCSCCEEEEEEEE--TTEEEEESSTTCSBCSEEEECCCGGGTCEEEESCCTTC-----CSCCSCEEEEEEC
T ss_pred eeEEEECCCCCCCCcccEEEEE--CCEEEEEecCCCcccceEEEeecceeeeeecccCCccc-----cccCCCcEEEEEe
Confidence 3567765432 2277889998 56777866543 234666544332 11111100 0011148999996
Q ss_pred cCCcceEEEEeCCHHHHHHHHHHHHHHHHccCC
Q 001236 96 NNGKRSLDLICKDKVEAEVWIAGLKALISSGQG 128 (1117)
Q Consensus 96 ~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~~~ 128 (1117)
. .|++-|.|.+++|++.|+..|+.+|...+.
T Consensus 346 ~--~rty~l~A~s~~e~~~Wi~aL~~~i~~p~~ 376 (386)
T 3lju_X 346 P--DRKFLFACETESDQREWVAAFQKAVDRPML 376 (386)
T ss_dssp S--SCEEEEEESSHHHHHHHHHHHHHHHHSCCC
T ss_pred C--CeEEEEEcCCHHHHHHHHHHHHHHHhccCC
Confidence 5 499999999999999999999999976543
No 76
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=93.38 E-value=0.32 Score=47.09 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=53.3
Q ss_pred eEEEEec---CCcCeeEeEEEeCCCCEEEEec-----CCC---Ccccccce--eeecccccCChhHhhhcCCCCCCceEE
Q 001236 26 QLLKYGR---KGKPKFYPFRLSNDETSLIWIS-----SSG---ERSLKLAS--VSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1117)
Q Consensus 26 ~llK~~r---~~kpk~r~f~Ls~d~~~l~W~s-----~~~---~~~l~l~~--I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1117)
.|.|-++ |.| |+|+|.|..+ .|.+++ ..+ ...|.|.. |..+.+-.+ ......+|.
T Consensus 13 ~L~KqG~~~~K~W-KrRwFVL~~~--~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~---------~~~~k~~F~ 80 (126)
T 1wi1_A 13 YLWAIGKNVWKRW-KKRFFVLVQV--SQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPG---------LEGGRAFFN 80 (126)
T ss_dssp EEEEECSSSCCSC-EEEEEEEEEE--ETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSS---------CCSCSSEEE
T ss_pred EEEEeCCCccccc-ceEEEEEeCC--EEEEEEcccccccCCCCceEEECCCcEEEEecCCcc---------cccCceEEE
Confidence 6777765 345 7799999866 444443 222 22344432 333322111 123456899
Q ss_pred EEEcCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 93 LIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 93 Iiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
|+..+ ++.=|.|.+++|++.||..|...+.
T Consensus 81 ~v~~~--~ty~~~Adseee~~~WikAi~~A~~ 110 (126)
T 1wi1_A 81 AVKEG--DTVIFASDDEQDRILWVQAMYRATG 110 (126)
T ss_dssp EECSS--CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EecCC--ceEEEEcCCHHHHHHHHHHHHHHhc
Confidence 88643 5688999999999999999987774
No 77
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=92.43 E-value=0.88 Score=43.02 Aligned_cols=86 Identities=15% Similarity=0.083 Sum_probs=54.2
Q ss_pred CeEEEEec-CCcCeeEeEEEeCCC-CEEEEecCCC----Ccccccc--eeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 25 AQLLKYGR-KGKPKFYPFRLSNDE-TSLIWISSSG----ERSLKLA--SVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 25 t~llK~~r-~~kpk~r~f~Ls~d~-~~l~W~s~~~----~~~l~l~--~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
..|.|-++ +.| +.|.|.|..+. ..|.+++..+ ...|+|. .|..+-++ .......||-|+..
T Consensus 12 G~L~k~~~~~~W-kkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~----------~~~~~~~~Fki~~~ 80 (112)
T 2coc_A 12 GPLRLSESGETW-SEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPE----------ERLDSGHVWKLQWA 80 (112)
T ss_dssp EEEEEESSSSCE-EEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSS----------SCCSSSEEEEEEET
T ss_pred EEEEecCCCCCc-eEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCcc----------cccCCCCEEEEecC
Confidence 35556433 333 55667787654 5777655433 2346663 33221111 11224679999954
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
.++.-|.|.++++++.|+..|+...
T Consensus 81 --~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 81 --KQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp --TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999998755
No 78
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=92.09 E-value=0.18 Score=53.79 Aligned_cols=83 Identities=27% Similarity=0.416 Sum_probs=62.0
Q ss_pred cEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccC
Q 001236 391 QVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVS 470 (1117)
Q Consensus 391 ~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~ 470 (1117)
.|..|+--+.|..++--+++||.||++..||+-.... . -+..++++|..+++-+ ..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t------------a-gPfla~~AG~~fTVTV-----------n~ 365 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH------------A-GPYIQLAAGHNFTVTV-----------NT 365 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG------------G-CCEEEEEECSSEEEEE-----------ET
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC------------c-chHHhHhccCCeEEEE-----------ec
Confidence 5778888899999999999999999999999865322 1 2578999999999988 45
Q ss_pred CceEEEecCCCCCCC---CCCCCCCcccce
Q 001236 471 SGKLFTWGDGDKNRL---GHGDKEPRLKPT 497 (1117)
Q Consensus 471 ~G~Ly~WG~n~~GQL---G~g~~~~~~~P~ 497 (1117)
-+.+-.||+.-.+-| |.+.......|+
T Consensus 366 ~nyv~FWGDSPDNSLLwnGr~t~~~~~~~~ 395 (400)
T 4gbf_A 366 LNQVMFWGDSPDNSLLWNGRGTRVKHIEPT 395 (400)
T ss_dssp TCCEEEEECCTTSTTCCTTCCSBCCCCCCC
T ss_pred eeeEEEecCCCCcceeecCccceeeeccCC
Confidence 778999998765554 334333334444
No 79
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=91.96 E-value=0.32 Score=44.44 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKA 121 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~ 121 (1117)
...||.|+..+ .+++-|.|.|++|++.|+..|+.
T Consensus 72 ~~~~F~i~~~~-~~~~~~~A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 72 KKHVFKLRLSD-GNEYLFQAKDDEEMNTWIQAISS 105 (106)
T ss_dssp SSSEEEEECTT-SCEEEEECSSHHHHHHHHHHHHH
T ss_pred CccEEEEEecC-CCEEEEECCCHHHHHHHHHHHhc
Confidence 45799999643 48899999999999999999874
No 80
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=91.91 E-value=0.47 Score=44.50 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=49.0
Q ss_pred eeEeEEEeCCCCEEEEecCCCCc-ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEeCCHHHHHHH
Q 001236 37 KFYPFRLSNDETSLIWISSSGER-SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVW 115 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~W~s~~~~~-~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~W 115 (1117)
+.|+|.|..+ .|.+++..+.. .....++. |..+..- ..........||.|+..+ .+++-|.|+|++|++.|
T Consensus 21 k~rwfvL~~~--~L~~yk~~~~~~p~~~i~l~----~~~~~~~-~~~~~~~r~~~F~l~~~~-~~~y~f~A~s~ee~~~W 92 (112)
T 3cxb_B 21 KTCFVVLSNG--ILYQYPDRTDVIPLLSVNMG----GEQCGGC-RRANTTDRPHAFQVILSD-RPCLELSAESEAEMAEW 92 (112)
T ss_dssp EEEEEEEETT--EEEEESSSSCCSCSEEEETT----C-CEEEE-EECCCSSCTTEEEEEETT-SCCEEEECSSHHHHHHH
T ss_pred eEEEEEEECC--EEEEECCCCCCCccceEEec----CCEEEee-eccCCCCCCeEEEEEcCC-CCEEEEEcCCHHHHHHH
Confidence 6788989764 67776543221 11111111 1111100 001123346799999865 46788999999999999
Q ss_pred HHHHHHHHHc
Q 001236 116 IAGLKALISS 125 (1117)
Q Consensus 116 v~GL~~Li~~ 125 (1117)
+..|+..+..
T Consensus 93 i~ai~~~~~~ 102 (112)
T 3cxb_B 93 MQHLCQAVSK 102 (112)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 81
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=91.88 E-value=0.17 Score=58.43 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=61.6
Q ss_pred eEEEEec-CCcCeeEeEEEeCCCCEEEEecCC----CCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc--CC
Q 001236 26 QLLKYGR-KGKPKFYPFRLSNDETSLIWISSS----GERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN--NG 98 (1117)
Q Consensus 26 ~llK~~r-~~kpk~r~f~Ls~d~~~l~W~s~~----~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~--~~ 98 (1117)
.|+|-++ .+.-|.|+|.|+.....|.|+... +...|.|.++..+.. ... .....+|-|.|. +.
T Consensus 151 ~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~---~~~-------~~~~~~f~I~~~~~~~ 220 (386)
T 3lju_X 151 FLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQ---PAK-------IGHPHGLQVTYLKDNS 220 (386)
T ss_dssp EEEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEEC---HHH-------HTSTTCEEEEEEETTE
T ss_pred ceeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEc---ccc-------cCCCceEEEEEecCCC
Confidence 4555544 333488999998778889996554 245677877765551 111 124578999874 45
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
.|++-|.|.|.+|++.|+..|+...
T Consensus 221 ~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 221 TRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 6899999999999999999998754
No 82
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=91.78 E-value=0.72 Score=44.15 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=55.1
Q ss_pred hcCCeEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC-------CcccccceeeecccccCChhHhhhcCCCCCCceEE
Q 001236 22 KKGAQLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG-------ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFS 92 (1117)
Q Consensus 22 ~~Gt~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~-------~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FS 92 (1117)
+.| .|.|-+. ++| +.|+|.|.++ .|.+++... ...|.|.+-.=...-..- -.+-........+|.
T Consensus 8 k~G-~L~Kk~~~~k~W-~~rwfVL~~~--~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~--~~~~~~~~~~~~~F~ 81 (120)
T 4a6h_A 8 KSG-FLERRSKFLKSY-SKGYYVLTPN--FLHEFKTADRKKDLVPVMSLALSECTVTEHSRKN--STSSPNSTGSDAKFV 81 (120)
T ss_dssp EEE-EEEEEETTTTEE-EEEEEEECSS--EEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCC--C---------CCEEE
T ss_pred EEE-EEEEcCCCCCCC-ccEEEEEeCC--EEEEEcCCCcCcCCCceEEEECCCCEEEEccccc--ccccccccCCCcEEE
Confidence 444 4555443 334 7788999877 888875432 234454322111100000 000000112567899
Q ss_pred EEEcCC-----cceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 93 LIYNNG-----KRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 93 Iiy~~~-----~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
|...+. .++.-|-|.+.+|++.|+..|+.+.
T Consensus 82 i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 82 LHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 988763 4689999999999999999999764
No 83
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=91.77 E-value=0.26 Score=52.54 Aligned_cols=68 Identities=15% Similarity=0.262 Sum_probs=56.9
Q ss_pred CEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCC
Q 001236 284 DVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGT 363 (1117)
Q Consensus 284 ~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~ 363 (1117)
.|.+|+--..|++++--++++|.||++++||+-.... .....++++|.++++-+..-..+-.||+..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 4557888899999999999999999999999876422 135678999999999999999999999875
Q ss_pred C
Q 001236 364 H 364 (1117)
Q Consensus 364 ~ 364 (1117)
.
T Consensus 377 D 377 (400)
T 4gbf_A 377 D 377 (400)
T ss_dssp T
T ss_pred C
Confidence 3
No 84
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=91.75 E-value=0.48 Score=53.74 Aligned_cols=86 Identities=24% Similarity=0.272 Sum_probs=57.6
Q ss_pred eEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC--
Q 001236 26 QLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN-- 97 (1117)
Q Consensus 26 ~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~-- 97 (1117)
+|.|-+. ++| +.|+|.|.. ..|.|++... ...|+|..+. |+.-. ......||.|+..+
T Consensus 218 ~L~K~g~~~k~W-kkRwFVL~~--~~L~Yyk~~~~~~p~G~I~L~~~~-v~~~~----------~~~~~~~F~I~~~~~~ 283 (347)
T 2r09_A 218 WLLKLGGRVKTW-KRRWFILTD--NCLYYFEYTTDKEPRGIIPLENLS-IREVE----------DPRKPNCFELYNPSHK 283 (347)
T ss_dssp EEEEECSSSCCE-EEEEEEEET--TEEEEESSTTCSSCSEEEECTTCE-EEEEC----------CSSCSSEEEEECSSST
T ss_pred eeEecCCCcccc-eeEEEEEcC--CEEEEEcCCCccCCcEEEEcCCeE-EEEcc----------CCCCCCEEEEEeCCcc
Confidence 4566643 344 778899975 4788865532 2356665553 22211 12345789998643
Q ss_pred ------------------CcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 98 ------------------GKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 98 ------------------~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
..|++-|.|.+++|++.|+..|+..+..
T Consensus 284 ~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~ 329 (347)
T 2r09_A 284 GQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR 329 (347)
T ss_dssp TCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 2588999999999999999999988854
No 85
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=91.45 E-value=0.055 Score=62.66 Aligned_cols=40 Identities=25% Similarity=0.533 Sum_probs=34.9
Q ss_pred ecccchhhcccccccccc-cccccccccccCcceeccCCCC
Q 001236 628 KWVSSAEQLQCSACRQAF-GFTRKRHNCYNCGLVHCHSCSS 667 (1117)
Q Consensus 628 kwvs~~d~s~Cs~C~~~F-~f~rkrh~C~~CG~v~C~~CSs 667 (1117)
.|.+......|..|+..| ++.+++|+|+.||.++|..|+.
T Consensus 350 ~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 350 QMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp EEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred ccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 455667788999999887 6899999999999999999975
No 86
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.41 E-value=22 Score=40.10 Aligned_cols=229 Identities=10% Similarity=0.009 Sum_probs=131.5
Q ss_pred CEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCC
Q 001236 284 DVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGT 363 (1117)
Q Consensus 284 ~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~ 363 (1117)
.|..++....+.+.-..+|.|+.|-.... + ....+.. ....|..++......+.-..||.|++|-...
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E----------CKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC-C----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC-e----------EEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence 46677777778888889999999964321 1 0111111 2346777777666667778899999996541
Q ss_pred CCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccce
Q 001236 364 HNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLR 443 (1117)
Q Consensus 364 ~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~k 443 (1117)
+. ....+. .....|..++......+.-..+|.|+.|-......+ .......-....
T Consensus 203 ---~~----------~~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~---------~~~~~~~~~~~~ 258 (435)
T 1p22_A 203 ---GE----------MLNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI---------TLRRVLVGHRAA 258 (435)
T ss_dssp ---CC----------EEEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCC---------EEEEEECCCSSC
T ss_pred ---Cc----------EEEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCc---------eeeeEecCCCCc
Confidence 11 011111 123467888877777777788999999964322111 000111111224
Q ss_pred EEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecC
Q 001236 444 TIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTS 523 (1117)
Q Consensus 444 I~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~d 523 (1117)
|..++....+.+.- ..+|.|..|-..... +..........|..++......+.-..+
T Consensus 259 v~~~~~~~~~l~s~-----------~~dg~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~g~~d 315 (435)
T 1p22_A 259 VNVVDFDDKYIVSA-----------SGDRTIKVWNTSTCE------------FVRTLNGHKRGIACLQYRDRLVVSGSSD 315 (435)
T ss_dssp EEEEEEETTEEEEE-----------ETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred EEEEEeCCCEEEEE-----------eCCCeEEEEECCcCc------------EEEEEcCCCCcEEEEEeCCCEEEEEeCC
Confidence 55555533333222 468999999643211 1111111233567777777777788889
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeC
Q 001236 524 GHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGK 583 (1117)
Q Consensus 524 G~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~ 583 (1117)
|.|..|-.... + ....+. .....|..|+....+.+.-..+|.|..|-.
T Consensus 316 g~i~iwd~~~~-~---------~~~~~~--~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 316 NTIRLWDIECG-A---------CLRVLE--GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp SCEEEEETTTC-C---------EEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred CeEEEEECCCC-C---------EEEEEe--CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 99999975421 1 111111 123457777776666666678999999964
No 87
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=90.15 E-value=0.65 Score=53.67 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=34.6
Q ss_pred CceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 88 YLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 88 ~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
..||-|+..++.+++-|.|.+++|++.|+..|+..+...
T Consensus 362 ~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 362 RYCFQITTPNGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp SSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred CceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 469999998778899999999999999999999888543
No 88
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=90.13 E-value=0.38 Score=45.68 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=31.9
Q ss_pred CCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 86 ~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
+...+|.|+..+ .++.-|.|.+++|++.|+..|+..+..
T Consensus 82 kr~~~F~l~t~~-~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 82 KKKHVLRVKLAN-GALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp SSTTEEEEECSS-SCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEEcC-CCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 345799998533 477889999999999999999988753
No 89
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=90.03 E-value=0.7 Score=50.40 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=56.2
Q ss_pred eEEEEec--CCcCeeEeEEEeCCCCEEEEecCCC----Ccccccceeeeccc--ccCChhHhhhcCCCCCCceEEEEEcC
Q 001236 26 QLLKYGR--KGKPKFYPFRLSNDETSLIWISSSG----ERSLKLASVSKIIP--GQRTAVFQRYLRPEKDYLSFSLIYNN 97 (1117)
Q Consensus 26 ~llK~~r--~~kpk~r~f~Ls~d~~~l~W~s~~~----~~~l~l~~I~eI~~--G~~t~~f~r~~~~~~~~~~FSIiy~~ 97 (1117)
+|.|-+. ++| +.|+|.|..+ .|.|++... ...+.|.++..+.. +.... +. ...+...||.|++.+
T Consensus 173 ~L~k~~~~~k~W-kkR~fvL~~~--~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~--~~--~~~~~~~~F~i~~~~ 245 (291)
T 3tca_A 173 ALYLKEDGKKSW-KRRYFLLRAS--GIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCK--MK--YKAPTDHCFVLKHPQ 245 (291)
T ss_dssp EEEEECTTSSCE-EEEEEEECSS--EEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHH--HH--HCCSSSCEEEEECTT
T ss_pred EEEEeCCCCCCc-eEEEEEEeCC--EEEEEecCccccccCceeeccceeEEEEecCccc--cc--cCCCCCeEEEEEcCC
Confidence 4555533 344 6788988654 577754432 23455655543322 22211 11 113345799999854
Q ss_pred ----CcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 98 ----GKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 98 ----~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
..++.-|.|.|++|++.|+.+|+...
T Consensus 246 ~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 246 IQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp CCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 34778999999999999999998554
No 90
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=89.43 E-value=1 Score=49.04 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
...||.|+.. ..++.-|.|.|++|++.|+..|+..+.
T Consensus 88 k~~~F~I~t~-~~r~y~f~A~s~ee~~~Wi~aI~~a~~ 124 (263)
T 3a8p_A 88 KEHVFCLSNS-CGDVYLFQATSQTDLENWVTAIHSACA 124 (263)
T ss_dssp CSSEEEEECT-TSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcC-CCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4689999874 347888999999999999999998884
No 91
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.35 E-value=3.1 Score=38.20 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=48.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQR-------CEFQELELQK-STKKAQEAMAVAAEESSKAKAAKDVIKSLTAQL 896 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~-------~~~~~~~~~~-~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ql 896 (1117)
-.+.|..-+...-.|+.+|+.++..-+.+ ....+.||+. +..=++||-.|++++..++-+++.=.+.|.+||
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555666666555443333 3344455553 333456899999999888888888889999999
Q ss_pred HHH
Q 001236 897 KDM 899 (1117)
Q Consensus 897 k~~ 899 (1117)
+|.
T Consensus 93 ~d~ 95 (97)
T 2eqb_B 93 REK 95 (97)
T ss_dssp HHH
T ss_pred hhc
Confidence 874
No 92
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=89.18 E-value=0.89 Score=52.14 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
...||.|+..++.|+.-|.|.+++|++.|+..|+..+..
T Consensus 338 r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 338 RRYCFQITSFDGKKSSILQAESKKDHEEWICTINNISKQ 376 (385)
T ss_dssp CSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 347999998765589999999999999999999988743
No 93
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.91 E-value=4.3 Score=37.67 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
-+.++..++-.+|.+|.+|..+.+.+|.+++.++.+|.....+...+.-.|-.-+.+|+.++.-|
T Consensus 34 ~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 34 AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777899999999999999999999999987766655444444666788888866543
No 94
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.73 E-value=30 Score=37.55 Aligned_cols=210 Identities=9% Similarity=0.028 Sum_probs=112.6
Q ss_pred CCCeEEEEec--CCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEec---CCeeEEEccC
Q 001236 334 MTSVDFVTCG--EFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCG---PWHTALITST 408 (1117)
Q Consensus 334 ~~~I~~Va~G--~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G---~~HtlaLt~d 408 (1117)
+..+..+... ..+.+++|++|++|.---. .|-.+. +. -+ +.++.+|+.|.+- ..+.+++|.+
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~-----~lp~~~----~~--~l--l~~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGS-----QALQGS----KV--SL--KSREEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSH-----HHHTSE----EC--CC--SSTTCCEEEEEEGGGSCSEEEEEETT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhh-----hCccCc----cc--cc--CCCCCEEEEEECCcCCCCEEEEEeCC
Confidence 3455554433 4558899999999976321 111000 00 02 3457789988762 2468889999
Q ss_pred CcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEee--CCceEEEEEEeeecccccccCCceEEEecCCCCCCCC
Q 001236 409 GQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVAC--GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLG 486 (1117)
Q Consensus 409 G~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~Vac--G~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG 486 (1117)
|.+...-...|-+-.. -...+..-.+..++.+.. +..+.+++ |++|.+|.+-..+--.+|
T Consensus 90 G~iKr~~l~~~~~~~~-------G~~~i~lkegD~l~~~~~~~~~~~ill~-----------T~~G~~~r~~~~eip~~g 151 (276)
T 3no0_A 90 GYVKKIPLAEFEYKAQ-------GMPIIKLTEGDEVVSIASSVDETHILLF-----------TKKGRVARFSVREVPPST 151 (276)
T ss_dssp SEEEEEEGGGTTTCST-------TEECSCCCTTCCEEEEEECCSSCEEEEE-----------ETTSEEEEEEGGGSCBCC
T ss_pred CEEEEEEHHHhhhhcC-------CeEEEecCCCCEEEEEEEeCCCCEEEEE-----------ECCCEEEEEEhhhCCCcC
Confidence 9998887555521100 011111112334444433 33334444 679999998665544333
Q ss_pred CCCCCCcccceeecccCCCCEEEEEec--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEE-
Q 001236 487 HGDKEPRLKPTCVPALIDYNFHKVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIA- 563 (1117)
Q Consensus 487 ~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is- 563 (1117)
.+..-.. .+....+..|+.+... ..+.+++|++|.+.-.-..++-..+.+..- .. .+ ..+..++.+.
T Consensus 152 R~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG--v~-~i---~~~~~lv~~~~ 221 (276)
T 3no0_A 152 PGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG--TE-VS---GTKDTLVDLIP 221 (276)
T ss_dssp TTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC--EE-CC---CSSSCEEEEEE
T ss_pred CCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc--eE-EE---cCCCcEEEEEE
Confidence 3222111 1222234567665543 346788899998887776555443332110 00 00 1123444432
Q ss_pred -eCCCcceeeecCCeEEE--EeCC
Q 001236 564 -CGAYHVAVLTSRNEVYT--WGKG 584 (1117)
Q Consensus 564 -~G~~Ht~aLT~dG~Vy~--WG~n 584 (1117)
.+....+++|++|.+.- +--.
T Consensus 222 ~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 222 IKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp ESSEEEEEEEETTSCEEEEEEEGG
T ss_pred eCCCCEEEEEcCCCeEEEeeeCHH
Confidence 35667889999999988 6443
No 95
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=88.58 E-value=1.1 Score=43.76 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=61.4
Q ss_pred hcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCC-----CcccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 22 KKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSG-----ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 22 ~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~-----~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
-.+..++++++.+..+.|+|.|=++...+.=.+.+. +..++|..|. |+.-.++ +...+||.|.-
T Consensus 30 ~~s~v~~~~~~~~~~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~-V~~~ed~---------~~~~~aFeI~g- 98 (132)
T 1v61_A 30 FMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMV-VNRLDEI---------EGSDCMFEITG- 98 (132)
T ss_dssp CEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCB-CSTTCSS---------SSSCCCEEEEC-
T ss_pred EEeeEEEEEcccCcceEEEEEEcCCeEEEEEecCCCceEEEEEEEecceeE-EEecccc---------ccCccEEEEec-
Confidence 345566666665667899999998866554433321 2345555442 1111111 23457999873
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 97 NGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 97 ~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
...+++=++|.+.+|.+.|+..|+.++..+
T Consensus 99 ~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~~ 128 (132)
T 1v61_A 99 STVERIVVHCNNNQDFQEWMEQLNRLTKSG 128 (132)
T ss_dssp SSSCEEEECCCCSHHHHHHHHHHHHHHTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 334889999999999999999999998544
No 96
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=88.45 E-value=2.1 Score=41.07 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=30.9
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
...+|.|...+ .++.-|.|++++|++.||..|+..|.
T Consensus 88 r~~~F~l~t~~-~~~yl~qA~s~~e~~~Wi~aI~~~i~ 124 (129)
T 2p0d_A 88 RRNVLHIRTIP-GHEFLLQSDHETELRAWHRALRTVIE 124 (129)
T ss_dssp SSSEEEEECTT-SCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCC-CCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 35799998643 36677999999999999999998885
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=87.62 E-value=41 Score=37.82 Aligned_cols=229 Identities=12% Similarity=0.029 Sum_probs=130.4
Q ss_pred CEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCC
Q 001236 284 DVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGT 363 (1117)
Q Consensus 284 ~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~ 363 (1117)
.|..++......+.-..+|.|+.|-....- ....+.. ....|..++......+..+.||.|+.|-...
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~ 228 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGE-----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcCc-----------EEEEECC-CCCcEEEEEecCCEEEEEeCCCEEEEEECCC
Confidence 466677767777777889999999643311 0111111 2345777777777778888999999995431
Q ss_pred CCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccce
Q 001236 364 HNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLR 443 (1117)
Q Consensus 364 ~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~k 443 (1117)
+. ....+.. ....|..++......+.-..+|.|+.|-....- ....+.. ....
T Consensus 229 ---~~----------~~~~~~~--~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~-~~~~ 281 (445)
T 2ovr_B 229 ---GQ----------CLHVLMG--HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-----------CLHTLQG-HTNR 281 (445)
T ss_dssp ---CC----------EEEEEEC--CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-----------EEEEECC-CSSC
T ss_pred ---Cc----------EEEEEcC--CcccEEEEEECCCEEEEEcCCCEEEEEECCCCc-----------EeEEecC-CCCc
Confidence 10 0111111 233566777766677777889999999632210 0011111 1124
Q ss_pred EEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecC
Q 001236 444 TIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTS 523 (1117)
Q Consensus 444 I~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~d 523 (1117)
|..++....+.+.- ..+|.|+.|-..... +..........+..+.......+.-..+
T Consensus 282 v~~~~~~~~~l~~~-----------~~d~~i~i~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~d 338 (445)
T 2ovr_B 282 VYSLQFDGIHVVSG-----------SLDTSIRVWDVETGN------------CIHTLTGHQSLTSGMELKDNILVSGNAD 338 (445)
T ss_dssp EEEEEECSSEEEEE-----------ETTSCEEEEETTTCC------------EEEEECCCCSCEEEEEEETTEEEEEETT
T ss_pred eEEEEECCCEEEEE-----------eCCCeEEEEECCCCC------------EEEEEcCCcccEEEEEEeCCEEEEEeCC
Confidence 55555533332222 468899999653211 1111111223466666667777777889
Q ss_pred CeEEEEeCCCCCCCCCCCCCCCcceeeec-ccCCCCeEEEEeCCCcceeeecCCeEEEEeCC
Q 001236 524 GHVFTMGSTVYGQLGNPNADGKLPCLVED-KLAGESVEEIACGAYHVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 524 G~Vy~wGsN~~GQLG~~~~~~~~P~~v~~-~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n 584 (1117)
|.|+.|-.... + ....+.. ......|..++....+.+.-..+|.|+.|-..
T Consensus 339 g~i~vwd~~~~-~---------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 339 STVKIWDIKTG-Q---------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp SCEEEEETTTC-C---------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CeEEEEECCCC-c---------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECC
Confidence 99999975321 1 1111111 01234677777766666666789999999754
No 98
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=87.57 E-value=2.2 Score=42.45 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=32.5
Q ss_pred CCceEEEEEcCC-cceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNG-KRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 87 ~~~~FSIiy~~~-~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
....|.|...+. .++++|.|.+.+|+.-|+..|+..+
T Consensus 110 ~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa 147 (150)
T 2fjl_A 110 RLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 147 (150)
T ss_dssp CSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 457999999765 7899999999999999999998765
No 99
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.34 E-value=19 Score=44.28 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=14.3
Q ss_pred CCcceeeecCCeEEEEeC
Q 001236 566 AYHVAVLTSRNEVYTWGK 583 (1117)
Q Consensus 566 ~~Ht~aLT~dG~Vy~WG~ 583 (1117)
..|++++..+|+||++|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 567777777799999984
No 100
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=84.17 E-value=2.2 Score=34.58 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
-.+|-++|..|+.+|-.+|+||+|+.+=+++-
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666788889999999999999999988763
No 101
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=84.11 E-value=3.5 Score=39.19 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
...+|.|...++ +..-|.|.|++|++.|+..|+.-|
T Consensus 87 rk~vF~l~t~~~-~~ylfqA~s~~e~~~Wi~aI~~aI 122 (124)
T 3pp2_A 87 RKNVLELRSRDG-SEYLIQHDSEAIISTWHKAIAQGI 122 (124)
T ss_dssp SSSEEEEECTTS-CEEEEECSCHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCC-CEEEEECCCHHHHHHHHHHHHHHH
Confidence 357899886543 566699999999999999998765
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.53 E-value=3.3 Score=38.86 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
|+.|+.+++.|.++.+..+.|++++.+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444444444444444433
No 103
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=82.40 E-value=6.7 Score=35.80 Aligned_cols=67 Identities=24% Similarity=0.260 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLR----QRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~----~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~ 901 (1117)
...|++-++.|++|+..|++|..+|. +|+..-+.+++++.+.++.-+. +|-|-|--|..+++-+.|
T Consensus 15 a~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e----------~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 15 VGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE----------AAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH----------hhHHHhHHHHHHHHHhHH
Confidence 46799999999999999999999998 6777777777777777777554 344567778777776665
Q ss_pred c
Q 001236 902 R 902 (1117)
Q Consensus 902 ~ 902 (1117)
-
T Consensus 85 ~ 85 (94)
T 3fx7_A 85 D 85 (94)
T ss_dssp H
T ss_pred H
Confidence 3
No 104
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=81.70 E-value=69 Score=35.45 Aligned_cols=229 Identities=11% Similarity=0.071 Sum_probs=117.4
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec--CCeEEEEEcCCcEEEEcCC
Q 001236 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG--EFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 285 I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG~VysWG~n 362 (1117)
+..++....+.++...+|.|+.|-....- ....+.......|..|+.. ..+.++-+.+|.|++|-..
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 33466666778888899999999754311 1112222123456666653 3455556679999999543
Q ss_pred CCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccc
Q 001236 363 THNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGL 442 (1117)
Q Consensus 363 ~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~ 442 (1117)
. +. ....+. .....|..++......+....+|.|+.|-....+.. ...+.. ...
T Consensus 165 ~---~~----------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~-~~~ 218 (401)
T 4aez_A 165 S---QT----------KLRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ----------IGTLQG-HSS 218 (401)
T ss_dssp T---CC----------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE----------EEEEEC-CSS
T ss_pred C---Ce----------EEEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcce----------eeEEcC-CCC
Confidence 1 00 111121 123467777776667777788999999975422110 111111 122
Q ss_pred eEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecC--cEEEEE
Q 001236 443 RTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGH--SLTVGL 520 (1117)
Q Consensus 443 kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~--~htlaL 520 (1117)
.|..++.......+++ ...+|.|+.|-.... .+..........|..++... ...++.
T Consensus 219 ~v~~~~~~~~~~~l~s---------~~~d~~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 219 EVCGLAWRSDGLQLAS---------GGNDNVVQIWDARSS------------IPKFTKTNHNAAVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp CEEEEEECTTSSEEEE---------EETTSCEEEEETTCS------------SEEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred CeeEEEEcCCCCEEEE---------EeCCCeEEEccCCCC------------CccEEecCCcceEEEEEECCCCCCEEEE
Confidence 4555554333222332 146888999865321 11111111122344444432 233333
Q ss_pred e---cCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeee----cCCeEEEEeCC
Q 001236 521 T---TSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLT----SRNEVYTWGKG 584 (1117)
Q Consensus 521 T---~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT----~dG~Vy~WG~n 584 (1117)
. .+|.|+.|-.... .....+ .....|..+........+++ .+|.|+.|-..
T Consensus 278 ~~gs~d~~i~i~d~~~~----------~~~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATG----------ARVNTV---DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp ECCTTTCEEEEEETTTC----------CEEEEE---ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred ecCCCCCEEEEEECCCC----------CEEEEE---eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 2 4888999865321 111111 12345777766544433332 58888888643
No 105
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.95 E-value=16 Score=33.74 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
+.++-.++-.+|.+|.+|..+.+.++.++..++++|..-..++-.+...|-.-+.+|+.++.-+
T Consensus 35 ~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777777777777777776555544444444666788888765543
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=79.64 E-value=1e+02 Score=39.76 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=32.6
Q ss_pred CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec-CCeEEEEEcCCcEEEEcCC
Q 001236 292 VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG-EFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 292 ~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-~~hs~aLT~dG~VysWG~n 362 (1117)
+.+.+....+|.|+.|-......+ .+. .....|..++.. ....++...+|.|+.|-..
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDYV------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEEE------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCCCceE------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence 345555567899999965431111 011 112345555443 3445566789999999654
No 107
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.93 E-value=7.6 Score=37.47 Aligned_cols=91 Identities=15% Similarity=0.225 Sum_probs=55.0
Q ss_pred eEEEEecCCc-CeeEeEEEeCCCCEEEEe--cCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceE
Q 001236 26 QLLKYGRKGK-PKFYPFRLSNDETSLIWI--SSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSL 102 (1117)
Q Consensus 26 ~llK~~r~~k-pk~r~f~Ls~d~~~l~W~--s~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtL 102 (1117)
+|+++..+-+ .|++||+|+..+-++.-. ..+.-+.|+|++|..|.+-.+.... .......||=|+-.+ .+
T Consensus 13 WmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~----~~~~~phcFEi~T~~--~~- 85 (129)
T 2d9z_A 13 WMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNI----SQGSNPHCFEIITDT--MV- 85 (129)
T ss_dssp EEEEEESSCCCCEEEEEEEESSCEEEESCSSCCSCCCEECTTTCCEECCTTCCCCS----SSCSCCCSEEEECSS--CE-
T ss_pred eEEEEccCCccccceeeEecCCeEEEEecCCCCceeceeeHHHhcccccccCcccc----CCCCCCceEEEEECC--EE-
Confidence 5667766544 466777776554444221 1234678999999999886655421 112234889887532 11
Q ss_pred EEEeCC----------------HHHHHHHHHHHH-HHH
Q 001236 103 DLICKD----------------KVEAEVWIAGLK-ALI 123 (1117)
Q Consensus 103 DLva~~----------------~~ea~~Wv~GL~-~Li 123 (1117)
-+|..| .+.++.|..+++ +||
T Consensus 86 y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 86 YFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp EEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 123321 689999999998 554
No 108
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.92 E-value=3 Score=34.11 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
.||..|+.++..|++|++.+..+++.+++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554
No 109
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=77.75 E-value=95 Score=34.73 Aligned_cols=226 Identities=8% Similarity=-0.052 Sum_probs=127.0
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCC
Q 001236 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTH 364 (1117)
Q Consensus 285 I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~ 364 (1117)
+..++..+...+.-..+|.|+.|-......+ ..+.. ....|..++......+.-..||.|++|-...
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~- 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------RTLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNAET- 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EECCC-CSSCEEEEEEETTEEEEEETTSCEEEEETTT-
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEE-----------EEEcC-CCCCEEEEEecCCEEEEEeCCCeEEEEECCc-
Confidence 4455666677777788999999975432111 11111 1245667776677777778899999995431
Q ss_pred CCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceE
Q 001236 365 NAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRT 444 (1117)
Q Consensus 365 ~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI 444 (1117)
+. ....+. .....|..++......+..+.+|.|+.|-......+ ..+.. ....|
T Consensus 189 --~~----------~~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~-~~~~v 242 (445)
T 2ovr_B 189 --GE----------CIHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL-----------HVLMG-HVAAV 242 (445)
T ss_dssp --TE----------EEEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEE-----------EEEEC-CSSCE
T ss_pred --Cc----------EEEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEE-----------EEEcC-CcccE
Confidence 10 111122 123357777777777777788999999964321100 01111 11234
Q ss_pred EEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecCC
Q 001236 445 IAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSG 524 (1117)
Q Consensus 445 ~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG 524 (1117)
..++......++- ..+|.|+.|-.... .+..........|..+.....+.+.-..+|
T Consensus 243 ~~~~~~~~~l~~~-----------~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~ 299 (445)
T 2ovr_B 243 RCVQYDGRRVVSG-----------AYDFMVKVWDPETE------------TCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 299 (445)
T ss_dssp EEEEECSSCEEEE-----------ETTSCEEEEEGGGT------------EEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred EEEEECCCEEEEE-----------cCCCEEEEEECCCC------------cEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence 4454433332222 45888998854221 111111112345777777777777778899
Q ss_pred eEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCC
Q 001236 525 HVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 525 ~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n 584 (1117)
.|+.|-..... ....+. .....+..+.......++-..+|.|+.|-..
T Consensus 300 ~i~i~d~~~~~----------~~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 300 SIRVWDVETGN----------CIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp CEEEEETTTCC----------EEEEEC--CCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eEEEEECCCCC----------EEEEEc--CCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 99999754211 011111 1234566666666666666789999999753
No 110
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.84 E-value=87 Score=33.83 Aligned_cols=208 Identities=14% Similarity=0.040 Sum_probs=107.2
Q ss_pred CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec---CCeEEEEEcCCcEEEEcCCCCCCCc
Q 001236 292 VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG---EFHTCAVTMAGELYTWGDGTHNAGL 368 (1117)
Q Consensus 292 ~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G---~~hs~aLT~dG~VysWG~n~~~~Gq 368 (1117)
..+.+++|++|++|.---...-. +.+. . + ...+.+|..+.+- +.+.+++|.+|-+.-.-.. .+.+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~-~~~~--~------l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~--~~~~ 102 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQ-GSKV--S------L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLA--EFEY 102 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHT-SEEC--C------C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG--GTTT
T ss_pred CCEEEEEcCCCeEEEEEhhhCcc-Cccc--c------c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH--Hhhh
Confidence 44588999999999764221100 0000 0 3 2346788887662 3578899999988776433 1111
Q ss_pred cCCCCCcceeeeeeecCCCCCCcEEEEEe--cCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEE
Q 001236 369 LGHGTDVSHWIPKRISGPLEGLQVASVTC--GPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIA 446 (1117)
Q Consensus 369 LG~g~~~~~~~P~~V~~~l~~~~Iv~Va~--G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~ 446 (1117)
-. .........++..++.+.. +..+.+++|++|++|.+-....-.+|.+..-.. .+..-.+.+|+.
T Consensus 103 ~~--------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~ 170 (276)
T 3no0_A 103 KA--------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSG 170 (276)
T ss_dssp CS--------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEE
T ss_pred hc--------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEE
Confidence 00 0111111234456665543 445689999999999997655444443211100 122223445665
Q ss_pred EeeCC-ceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEE--ecCcEEEEEecC
Q 001236 447 VACGV-WHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVA--CGHSLTVGLTTS 523 (1117)
Q Consensus 447 VacG~-~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia--~G~~htlaLT~d 523 (1117)
+.... ...++++ |.+|.+.-.--.++-..+.+...... + ..+..++.+. .+....+++|++
T Consensus 171 ~~~~~~~~~ll~~----------T~~G~~kr~~~~e~~~~~R~gkGv~~----i--~~~~~lv~~~~~~~~~~i~~~t~~ 234 (276)
T 3no0_A 171 LRIWNGEPYLLVI----------TAKGRVKKISHEEIPKTNRGVKGTEV----S--GTKDTLVDLIPIKEEVELLITTKN 234 (276)
T ss_dssp EEEESSCSEEEEE----------ETTSCEEEEEGGGSCCCCTTCCCEEC----C--CSSSCEEEEEEESSEEEEEEEETT
T ss_pred EEEeCCCCEEEEE----------eCCCcEEEeEHHHcccCCCCCcceEE----E--cCCCcEEEEEEeCCCCEEEEEcCC
Confidence 44332 2223331 55676665544333222221111000 0 1122344332 355688899999
Q ss_pred CeEEE--EeCCCCCCCCC
Q 001236 524 GHVFT--MGSTVYGQLGN 539 (1117)
Q Consensus 524 G~Vy~--wGsN~~GQLG~ 539 (1117)
|.+.- +-.++.-.+|.
T Consensus 235 G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 235 GKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp SCEEEEEEEGGGSCBCCT
T ss_pred CeEEEeeeCHHHCCCcCC
Confidence 99998 87665555543
No 111
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=76.60 E-value=44 Score=36.55 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=13.0
Q ss_pred CCeeEEEccCCcEEEEeC
Q 001236 399 PWHTALITSTGQLFTFGD 416 (1117)
Q Consensus 399 ~~HtlaLt~dG~Vy~wG~ 416 (1117)
..|++++ -+|+||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 3576666 7899999993
No 112
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.43 E-value=6 Score=36.31 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA-MAVAAEESSKAKAAKDVIKSLTAQLK 897 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~-~~~a~~e~~~~kaake~ik~lt~qlk 897 (1117)
-++..+||.++..|+.+....+.|+.++..++.+. -....-|+.|.+.-+| +..||+.|=
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E-lEeLTasLF 64 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE-VEDLTASLF 64 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44556666666666666666666666666665542 2223334444444444 345666443
No 113
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=75.66 E-value=82 Score=32.95 Aligned_cols=241 Identities=12% Similarity=-0.022 Sum_probs=114.3
Q ss_pred EEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecC-CeEEEEEcCCcEEEEcCCCCCC
Q 001236 288 IACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGE-FHTCAVTMAGELYTWGDGTHNA 366 (1117)
Q Consensus 288 Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~-~hs~aLT~dG~VysWG~n~~~~ 366 (1117)
+..+.-.+++++.+|++++++....+.+............... ....|..++... ...++...+|.|+.|-... .
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~--~ 82 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVYTGGKGCVKVWDISH--P 82 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC--CSSCCCEEEECSSSSEEEEECBSEEEEEETTS--T
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceecc--CCCceEEEEEecCCcEEEEcCCCeEEEEECCC--C
Confidence 3445556788999999999887654443322222111111111 234566665532 3334444589999996541 1
Q ss_pred CccCCCCCcceeeeeeecCCCCCCcEEEEEecCC--eeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceE
Q 001236 367 GLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW--HTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRT 444 (1117)
Q Consensus 367 GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~--HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI 444 (1117)
... . ....+........|..++.... ..++...+|.|+.|-..... . .....+. .....|
T Consensus 83 ~~~------~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------~-~~~~~~~-~~~~~i 144 (337)
T 1gxr_A 83 GNK------S--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--------P-RIKAELT-SSAPAC 144 (337)
T ss_dssp TCC------S--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEE-CSSSCE
T ss_pred Cce------e--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC--------c-ceeeecc-cCCCce
Confidence 100 0 0011111112335666665543 34444678888888643210 0 0000111 112234
Q ss_pred EEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEec--CcEEEEEec
Q 001236 445 IAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACG--HSLTVGLTT 522 (1117)
Q Consensus 445 ~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLT~ 522 (1117)
..++.......+++ ...+|.|+.|-.... .+..........|..++.. ....+....
T Consensus 145 ~~~~~~~~~~~l~~---------~~~dg~v~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 145 YALAISPDSKVCFS---------CCSDGNIAVWDLHNQ------------TLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp EEEEECTTSSEEEE---------EETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCEEEE---------EeCCCcEEEEeCCCC------------ceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 55544332222221 145788888864321 1111111123356666553 345556667
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCC--cceeeecCCeEEEEeCC
Q 001236 523 SGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAY--HVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 523 dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~--Ht~aLT~dG~Vy~WG~n 584 (1117)
+|.|+.|-..... .+........|..++.... ..++-+.+|.|+.|-..
T Consensus 204 dg~i~~~d~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 204 DNTVRSWDLREGR-------------QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp TSEEEEEETTTTE-------------EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCcEEEEECCCCc-------------eEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 8999999653211 1111112345666655333 33444568888888654
No 114
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.74 E-value=1.1e+02 Score=33.84 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=61.5
Q ss_pred CEEEEEe--cCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcC
Q 001236 284 DVHHIAC--GVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 284 ~I~~Ia~--G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~ 361 (1117)
.|..|+. ...+.++-..+|.|+.|-...... ...+. .....|..++......+....+|.|+.|-.
T Consensus 136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred CEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEec
Confidence 4555655 344566667789999996543111 11111 123467778777777777889999999965
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC--CeeEEEccCCcEEEEeCC
Q 001236 362 GTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP--WHTALITSTGQLFTFGDG 417 (1117)
Q Consensus 362 n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~--~HtlaLt~dG~Vy~wG~N 417 (1117)
.. .+. ....+.. ....|..++... .+.+.-+.+|.|+.|-..
T Consensus 204 ~~--~~~----------~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 204 RI--ANH----------QIGTLQG--HSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp TS--SSC----------EEEEEEC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cc--Ccc----------eeeEEcC--CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 41 010 1111111 123566666543 344455678999999654
No 115
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=74.55 E-value=6.5 Score=32.02 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKA 882 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ 882 (1117)
.|.+|-+||..|..|-.++..++..++-.++ -|.|||++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~----~ak~eA~RA 44 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ----AAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3455555555555555555556665554444 577777754
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=74.23 E-value=1.7 Score=42.49 Aligned_cols=56 Identities=20% Similarity=0.545 Sum_probs=42.3
Q ss_pred hhhccccccccccccc-ccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhh
Q 001236 633 AEQLQCSACRQAFGFT-RKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1117)
Q Consensus 633 ~d~s~Cs~C~~~F~f~-rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~ 694 (1117)
.+...|..|...|+|. ...+.|..|...+|..|+.... ..+.++.=+|..|+..-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~------~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS------NNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC------CSSSSCCEEEHHHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccC------CCCCccceechhhHHHHH
Confidence 3567899999999854 5578999999999999975321 123466779999987644
No 117
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.80 E-value=17 Score=39.17 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=50.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
++.+++-...|..++..+..+++.++...+..+.++...+..++++-.-..++.+. .++-+..|..+..+++..+|+
T Consensus 99 ie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e---~~~e~~~l~~~r~~l~~~i~~ 175 (256)
T 3na7_A 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKN---IKETQQIIFKKKEDLVEKTEP 175 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCH
Confidence 35566666666667766666666666666666666666666665544433333332 223366777788889999988
Q ss_pred CC
Q 001236 906 GV 907 (1117)
Q Consensus 906 ~~ 907 (1117)
..
T Consensus 176 ~l 177 (256)
T 3na7_A 176 KI 177 (256)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 118
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=73.41 E-value=1.1e+02 Score=33.44 Aligned_cols=71 Identities=7% Similarity=-0.119 Sum_probs=39.5
Q ss_pred CCEEEEEecCc---EEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCccee-eecCCeEEE
Q 001236 505 YNFHKVACGHS---LTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAV-LTSRNEVYT 580 (1117)
Q Consensus 505 ~~I~~Ia~G~~---htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~a-LT~dG~Vy~ 580 (1117)
..|..++.... +.+.-..+|.|+.|-.....+ |...........|..+.......++ -..+|.|+.
T Consensus 291 ~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 291 CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----------PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360 (420)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEE
T ss_pred CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----------chhhhhccCCCCceEEEeCCCCEEEEecCCccEEE
Confidence 35666665433 666667889999996543211 1111111123456666555444333 346899999
Q ss_pred EeCCC
Q 001236 581 WGKGA 585 (1117)
Q Consensus 581 WG~n~ 585 (1117)
|-...
T Consensus 361 w~~~~ 365 (420)
T 3vl1_A 361 DIISD 365 (420)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 97554
No 119
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=73.16 E-value=12 Score=40.37 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=49.0
Q ss_pred cCeeEeEEEeCCCCEEEEecCCC---Cccc----ccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC----cceEE
Q 001236 35 KPKFYPFRLSNDETSLIWISSSG---ERSL----KLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG----KRSLD 103 (1117)
Q Consensus 35 kpk~r~f~Ls~d~~~l~W~s~~~---~~~l----~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~----~rtLD 103 (1117)
+=+.|+|.|..++ |.+.++.+ .+.+ +|.++ .|-.|.... +++ ..+...||.|..... ...--
T Consensus 147 ~WkkRyfvLr~sg--Ly~~~k~~sk~~r~l~~~~~L~~~-~vy~~~~~k--Kk~--kaPt~~~F~ik~~k~~~~~~~~~~ 219 (256)
T 3hk0_A 147 SWKKLYVCLRRSG--LYCSTKGTSAAPRHLQLLADLEDS-NIFSLIAGR--KQY--NAPTDHGLCIKPNKVRNETKELRL 219 (256)
T ss_dssp CEEEEEEEEETTE--EEEESSTTCCCGGGEEEEECCTTE-EEEEESSTH--HHH--CCSSSEEEEEEETTCSSCCTTCEE
T ss_pred cceEEEEEEeCCE--EEEEecCCCCccccceEEEEcCCC-EEEEecccc--ccc--CCCCCCEEEEEcccccCCCceEEE
Confidence 3377889998765 44544333 2222 44332 233343221 112 234467999986432 23467
Q ss_pred EEeCCHHHHHHHHHHHHHHH
Q 001236 104 LICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 104 Lva~~~~ea~~Wv~GL~~Li 123 (1117)
|.|.|+++++.|+++|+...
T Consensus 220 lcaede~~~~~W~~aIr~ak 239 (256)
T 3hk0_A 220 LCAEDEQTRTSWMTAFRLLK 239 (256)
T ss_dssp EEESSHHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHH
Confidence 88999999999999998765
No 120
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.34 E-value=11 Score=33.53 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
++||..|..|++|+..++++.+.|.++-++...|..--+
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444444444444444333
No 121
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=72.32 E-value=18 Score=34.56 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001236 825 ITDSLKKTNELLNQEVLKLRA----QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKA 884 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~----qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~ka 884 (1117)
.++.|+.-.+.|..|+.+++. -|..|+.++-.++.||....+..++ |.+|....++
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~----a~~e~e~Lr~ 75 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ----AADDCEFLRA 75 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 677787777777777777666 3567777777788888777766666 4555554443
No 122
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=72.14 E-value=7 Score=42.91 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=48.4
Q ss_pred cCCcCeeEeEEEeCCCCEEEEecCCC---Ccc-cccceeee--cccccCChhHhhhcCCCCCCceEEEEEcC----Ccce
Q 001236 32 RKGKPKFYPFRLSNDETSLIWISSSG---ERS-LKLASVSK--IIPGQRTAVFQRYLRPEKDYLSFSLIYNN----GKRS 101 (1117)
Q Consensus 32 r~~kpk~r~f~Ls~d~~~l~W~s~~~---~~~-l~l~~I~e--I~~G~~t~~f~r~~~~~~~~~~FSIiy~~----~~rt 101 (1117)
++++-+.|+|.|..++. .+.++.+ .+. +.+..+.. |-.|.. +++.. ..+...||.|.... ....
T Consensus 170 ~~k~WkkRyfvLr~sgL--yy~~K~~sk~~r~l~~l~~L~~~~VY~~~~---~kkk~-kaPt~~~F~ik~~~~~~~~~~~ 243 (281)
T 4gmv_A 170 GKKSWKKRYFLLRASGI--YYVPKGKAKVSRDLVCFLQLDHVNVYYGQD---YRNKY-KAPTDYCLVLKHPQIQKKSQYI 243 (281)
T ss_dssp TSSCEEEEEEEECSSCE--EEC---------CCEEEECGGGCEEEEESS---HHHHT-CCSCSCEEEEECTTCCSCCTTC
T ss_pred CCCCCeEEEEEEeCCEE--EEEeCCCCCccccceEEEEcCCcEEEEecc---ccccc-CCCCCcEEEEecCccCCCCCce
Confidence 34445888999987764 3433322 221 11222222 333332 22222 23567799998743 2345
Q ss_pred EEEEeCCHHHHHHHHHHHHHHH
Q 001236 102 LDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 102 LDLva~~~~ea~~Wv~GL~~Li 123 (1117)
--|.|.|+++.+.|+.+|+...
T Consensus 244 ~~~caede~~~~~Wv~Air~ak 265 (281)
T 4gmv_A 244 KYLCCDDVRTLHQWVNGIRIAK 265 (281)
T ss_dssp EEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHh
Confidence 6688889999999999998765
No 123
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=72.14 E-value=2 Score=42.98 Aligned_cols=51 Identities=29% Similarity=0.768 Sum_probs=40.1
Q ss_pred hhccccccccccccc-ccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhh
Q 001236 634 EQLQCSACRQAFGFT-RKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKL 693 (1117)
Q Consensus 634 d~s~Cs~C~~~F~f~-rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l 693 (1117)
+...|..|..+|+|. ...+-|..|...+|..|+.. .+..+.=+|..|+..-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---------~~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---------HPEEQGWLCDPCHLAR 118 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---------CSSSSSCEEHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc---------cCCCCcEeeHHHHHHH
Confidence 567899999999955 56788999999999999731 1224566999998763
No 124
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=71.92 E-value=89 Score=33.20 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=12.4
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|++++ -+|.||++|-.
T Consensus 48 ~~~~~~-~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGS 64 (306)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred eeEEEE-ECCEEEEEeCC
Confidence 466555 48899999864
No 125
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.13 E-value=22 Score=42.61 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=18.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCC
Q 001236 879 SSKAKAAKDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 879 ~~~~kaake~ik~lt~qlk~~~~~~~~~ 906 (1117)
-.+-+..|+=+-.++.|+|++-++++..
T Consensus 557 ~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3334445555566777999999999864
No 126
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=69.72 E-value=7.8 Score=37.80 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
.+.+.-+++++++-.+.-|++..|.|-.-..+++|+.+...---|-+.|++.+++|+..|...--||..
T Consensus 26 ~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~ 94 (158)
T 3tul_A 26 ESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQS 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666777777778888889998899999999999988899999999999999999888777753
No 127
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.69 E-value=19 Score=36.84 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.|.+|+.|+..|.++.+.++.||+.+++|++.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~s 52 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDS 52 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666665443
No 128
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=69.61 E-value=1.2e+02 Score=32.14 Aligned_cols=208 Identities=8% Similarity=-0.062 Sum_probs=101.5
Q ss_pred CCEEEEEec------CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEecc-CCCCCeEEEEecCC------eEEE
Q 001236 283 LDVHHIACG------VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLES-LTMTSVDFVTCGEF------HTCA 349 (1117)
Q Consensus 283 ~~I~~Ia~G------~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~-l~~~~I~~Va~G~~------hs~a 349 (1117)
..|..|+.. ....++...+|.|..|-......+ ........ .....|..++.... ..+.
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 456777764 556777778889999965432211 11111111 11244666555333 4555
Q ss_pred EEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC---CeeEEEccCCcEEEEeCCCCCCcCCCC
Q 001236 350 VTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP---WHTALITSTGQLFTFGDGTFGVLGHGD 426 (1117)
Q Consensus 350 LT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~---~HtlaLt~dG~Vy~wG~N~~GQLG~g~ 426 (1117)
-..+|.|++|-... ++ ....+.. ....|..|+... ...+....+|.|+.|-......
T Consensus 91 ~~~dg~i~v~d~~~---~~----------~~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----- 150 (366)
T 3k26_A 91 AGSRGIIRIINPIT---MQ----------CIKHYVG--HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL----- 150 (366)
T ss_dssp EETTCEEEEECTTT---CC----------EEEEEES--CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-----
T ss_pred ecCCCEEEEEEchh---ce----------EeeeecC--CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-----
Confidence 67899999995431 11 0111221 233577777643 4455557789999996432110
Q ss_pred CCCcccceeec--ccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCC-------CC-C-CCCc--
Q 001236 427 RKNVSYPREVE--SLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLG-------HG-D-KEPR-- 493 (1117)
Q Consensus 427 ~~~~~~P~~V~--~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG-------~g-~-~~~~-- 493 (1117)
...+. ......|..++.......+++- ..+|.|+.|-......+. .. + ....
T Consensus 151 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 151 ------VAIFGGVEGHRDEVLSADYDLLGEKIMSC---------GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp ------EEEECSTTSCSSCEEEEEECTTSSEEEEE---------ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred ------EEEecccccccCceeEEEECCCCCEEEEe---------cCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 11110 0122346666554333223321 458899999653311100 00 0 0000
Q ss_pred -----ccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCC
Q 001236 494 -----LKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTV 533 (1117)
Q Consensus 494 -----~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~ 533 (1117)
.............|..|+......+....+|.|..|-...
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 0000000112234555554466777778899999997643
No 129
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=69.51 E-value=27 Score=34.11 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~ 900 (1117)
..|..+++.+++.|+++.+..+.|+..++.++.++-.-..+-..+-...++=|..|..|++.+-
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777776666433332222233445566677776666653
No 130
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=69.21 E-value=1.1e+02 Score=31.67 Aligned_cols=16 Identities=19% Similarity=0.609 Sum_probs=10.0
Q ss_pred EEEEEecCCeEEEEeC
Q 001236 516 LTVGLTTSGHVFTMGS 531 (1117)
Q Consensus 516 htlaLT~dG~Vy~wGs 531 (1117)
..++++.+|++|+...
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 3456666777776654
No 131
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=68.71 E-value=2e+02 Score=34.51 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=16.0
Q ss_pred CCcceeeecCCeEEEEeCCCCC
Q 001236 566 AYHVAVLTSRNEVYTWGKGANG 587 (1117)
Q Consensus 566 ~~Ht~aLT~dG~Vy~WG~n~~G 587 (1117)
..|++++..+|+||+.|-...+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBC
T ss_pred ccCCeEECCCCCEEEECCcccC
Confidence 3577777779999999854433
No 132
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=68.31 E-value=24 Score=33.68 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
-+|.|+|.|-+-..|+.+|||+...+.+..+.-+..|.|
T Consensus 47 KVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr 85 (167)
T 4gkw_A 47 KVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKR 85 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 368899999888889999999988887776655555443
No 133
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.09 E-value=53 Score=31.14 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----H
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCE-------FQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA----Q 895 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~-------~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~----q 895 (1117)
+.+..-|.-|.-|+..++..++.++.|+| ..|.+|..++|.+++|...=.+=-+|..+-+|-|..|.. +
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeE 109 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEE 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555667777777777777754 445667788888887766555555667777776666654 4
Q ss_pred HHHHHh
Q 001236 896 LKDMAE 901 (1117)
Q Consensus 896 lk~~~~ 901 (1117)
+++|..
T Consensus 110 l~eLq~ 115 (119)
T 3ol1_A 110 IQELQA 115 (119)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 555543
No 134
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.72 E-value=1.5e+02 Score=32.75 Aligned_cols=215 Identities=12% Similarity=-0.012 Sum_probs=110.7
Q ss_pred EEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeee--eeecCCCCCCcEEEEEecC-----CeeEEEccCCcEE
Q 001236 340 VTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIP--KRISGPLEGLQVASVTCGP-----WHTALITSTGQLF 412 (1117)
Q Consensus 340 Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P--~~V~~~l~~~~Iv~Va~G~-----~HtlaLt~dG~Vy 412 (1117)
.+....+.+++|..|++|..--. .|-.......-.| ..+. +.++.+|+.+.+.. ...+++|.+|.+.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~-----~lp~~~r~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAY-----DLPEASRTARGQHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGG-----GSCBCCSSSCCEEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHH-----HCcCCCccCCCEEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 44567778889999999987432 1111111111112 1222 34577898887764 4678889999988
Q ss_pred EEeCCCCCCcCCCCCCCcccceeecccccceEEE--EeeCCceEEEEEEeeecccccccCCceEEEecCC--CCCCCCCC
Q 001236 413 TFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIA--VACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDG--DKNRLGHG 488 (1117)
Q Consensus 413 ~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~--VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n--~~GQLG~g 488 (1117)
-.-...|-.... .-...+..-.+..++. ++.+..+.+++ |++|++|.+--. +--.+|..
T Consensus 123 r~~l~~~~~~~r------~G~~~i~lke~D~lv~~~~~~~~d~ill~-----------T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 123 KSKLTDFDSNRS------GGIVAVNLRDNDELVGAVLCSAGDDLLLV-----------SANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp EEEGGGGCCCCS------SCEESCBCCTTCCEEEEEEECTTCEEEEE-----------ETTSEEEEEECCTTTSCCCCTT
T ss_pred EeEHHHhhcccc------CceEEEEECCCCEEEEEEEecCCCEEEEE-----------ECCCeEEEEECcccccCcCCcC
Confidence 776544421110 0000111112223333 23344444444 679999998776 33333332
Q ss_pred CCCCcccceeecccCCCCEEEEEec--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEE--Ee
Q 001236 489 DKEPRLKPTCVPALIDYNFHKVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEI--AC 564 (1117)
Q Consensus 489 ~~~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~I--s~ 564 (1117)
..-.. .+....+..|+.+..- ..+.+++|++|.+.-.-..+|-..+.+... ..-..+. -.+..++.+ ..
T Consensus 186 a~Gv~----~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-~~~~~l~--~~~d~lv~~~~~~ 258 (327)
T 3uc1_A 186 TSGVQ----GMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-VLTVMYD--RRRGRLVGALIVD 258 (327)
T ss_dssp SBCEE----SSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-EESSCCC--TTTCSEEEEEEEC
T ss_pred CCCee----eecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-EEEEEec--CCCCeEEEEEEeC
Confidence 21111 1222245567776654 346788899998776654443322221100 0000000 001234333 23
Q ss_pred CCCcceeeecCCeEEEEeCC
Q 001236 565 GAYHVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 565 G~~Ht~aLT~dG~Vy~WG~n 584 (1117)
+..+.+++|++|.+.-+--.
T Consensus 259 ~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 259 DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TTCEEEEEEGGGCEEEEEGG
T ss_pred CCccEEEEcCCCeEEEEehh
Confidence 66788999999998887443
No 135
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=67.60 E-value=15 Score=43.09 Aligned_cols=37 Identities=22% Similarity=0.544 Sum_probs=21.5
Q ss_pred ccceeEEE-eeh-hcc---ChhhHHHH---HHHhHhHHHhhhccc
Q 001236 1056 TRDLKRVR-FSR-RRF---GEHQAETW---WSENREKVYERYNVR 1092 (1117)
Q Consensus 1056 ~~~~~rv~-fs~-~~f---~~~~a~~w---w~~n~~~~~~~~~~~ 1092 (1117)
++.|-||| |.. ++| ...+|..| |-+...+|++...++
T Consensus 293 ~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~ 337 (455)
T 2dq0_A 293 TKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP 337 (455)
T ss_dssp CCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 46677776 553 444 23455544 345666777776664
No 136
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=66.42 E-value=16 Score=42.61 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=55.2
Q ss_pred CCcCeeEeEEEeCCCCEEEEecC-CCC-----cccccce--eeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEE
Q 001236 33 KGKPKFYPFRLSNDETSLIWISS-SGE-----RSLKLAS--VSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDL 104 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d~~~l~W~s~-~~~-----~~l~l~~--I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDL 104 (1117)
+++.+.|+|.|-.|..-+.=.+. +.. ..+++.+ |.++..|.... .......+|.|+...+.+++-|
T Consensus 347 ~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~------~~~~~~~~F~i~~~~~~~~~~l 420 (466)
T 2pz1_A 347 QAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRD------LHVSIKNAFRLHRGATGDSHLL 420 (466)
T ss_dssp TCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCS------SCCCBCEEEEEECSSSCCEEEE
T ss_pred CCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccc------cccccceeEEEEeCCCCeEEEE
Confidence 57778899999988543322211 111 2244433 33444443221 0112246899988766788999
Q ss_pred EeCCHHHHHHHHHHHHHHHHc
Q 001236 105 ICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 105 va~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.|.+.+|.+.|+..|+..+.+
T Consensus 421 ~a~s~~eK~~W~~~i~~a~~~ 441 (466)
T 2pz1_A 421 CTRKPEQKQRWLKAFAREREQ 441 (466)
T ss_dssp EESSHHHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988743
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.08 E-value=19 Score=31.26 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+.+|+.+=..-.+|+.+..+.++.|+.+.+.++.+|++++.+++.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444446677777778888888888888888888887764
No 138
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=65.98 E-value=7.3 Score=26.97 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 847 VESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 847 v~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
-+.|+.||..+|-+||.+.||++
T Consensus 3 wealekkcaalesklqalekkle 25 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999986
No 139
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=65.72 E-value=33 Score=35.60 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
+|+.-..|..++..++.++..|..+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEAD 28 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444344444444444433333333
No 140
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.40 E-value=24 Score=41.84 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=22.5
Q ss_pred ccceeEEE-eeh-hccC---h--hhHHHHH---HHhHhHHHhhhccc
Q 001236 1056 TRDLKRVR-FSR-RRFG---E--HQAETWW---SENREKVYERYNVR 1092 (1117)
Q Consensus 1056 ~~~~~rv~-fs~-~~f~---~--~~a~~ww---~~n~~~~~~~~~~~ 1092 (1117)
++.|-||| |.. ++|. . .++..|. .++..+|++...++
T Consensus 322 ~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLp 368 (501)
T 1wle_A 322 PWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLH 368 (501)
T ss_dssp CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 45677775 653 4442 2 3666554 45777888887765
No 141
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=65.09 E-value=17 Score=41.62 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=54.1
Q ss_pred CCcCeeEeEEEeCCCCEEEEecCC-CC-----cccccce--eeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEE
Q 001236 33 KGKPKFYPFRLSNDETSLIWISSS-GE-----RSLKLAS--VSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDL 104 (1117)
Q Consensus 33 ~~kpk~r~f~Ls~d~~~l~W~s~~-~~-----~~l~l~~--I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDL 104 (1117)
+|+.+.|+|.|-.|..-+.=.... .. ..+++.+ |.++..|.... | ......+|.|++..+.+++-|
T Consensus 270 ~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~-~-----~~~~~~~F~i~~~~~~~~~~l 343 (402)
T 2dfk_A 270 YGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDD-F-----NVSMKNAFKLHNKETEEVHLF 343 (402)
T ss_dssp TCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSS-S-----CCEESSEEEEEESSSSCEEEE
T ss_pred CCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccc-c-----ccccceeEEEEECCCCeEEEE
Confidence 577888999999885433222111 11 1244433 33333343220 0 111246899999876789999
Q ss_pred EeCCHHHHHHHHHHHHHHH
Q 001236 105 ICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 105 va~~~~ea~~Wv~GL~~Li 123 (1117)
.|.+.+|.+.|+..|+..+
T Consensus 344 ~a~s~~eK~~Wi~~i~~a~ 362 (402)
T 2dfk_A 344 FAKKLEEKIRWLRAFREER 362 (402)
T ss_dssp ECSSHHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHH
Confidence 9999999999999998766
No 142
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=64.86 E-value=28 Score=35.41 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA-QEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~-~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
.+.+++....|..++.+|.-|+..|.++-.....+|.++.++= .++..+.+.|.-+.|-..+=+-.+.+||..++-+
T Consensus 9 ~e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~ 86 (179)
T 2gd5_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMG 86 (179)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777666666666666666555442 2455555666666555444444455555554444
No 143
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.83 E-value=18 Score=32.44 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCE-------FQELELQKSTKKAQEAM 872 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~-------~~~~~~~~~~~~~~e~~ 872 (1117)
+.+..-|.-|.-|+..++..++.++.|+| ..|.++..++|-+++|.
T Consensus 10 ~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~ 62 (86)
T 3swk_A 10 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444444555555555555555543 23444555555555544
No 144
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=64.47 E-value=16 Score=43.24 Aligned_cols=83 Identities=10% Similarity=0.138 Sum_probs=39.6
Q ss_pred ccchhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhH
Q 001236 821 FSKSITDSLKKTNEL----LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV-----------AAEESSKAKAA 885 (1117)
Q Consensus 821 ~~~~~~~~~~~~~~~----l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~-----------a~~e~~~~kaa 885 (1117)
.+..+...+++.+-- +..+|..|-++-+.|..+.+.+..+.-+..|++.++..- +.+--++.+..
T Consensus 49 n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l 128 (501)
T 1wle_A 49 YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREI 128 (501)
T ss_dssp SHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHH
Confidence 344455566655431 345565555555555555555555544444444432211 01112334455
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 001236 886 KDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 886 ke~ik~lt~qlk~~~~~~ 903 (1117)
|+-||.|.++++++.++|
T Consensus 129 ~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 129 RKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666655555554444
No 145
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=64.24 E-value=70 Score=34.31 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=11.8
Q ss_pred CeEEEEEcCCcEEEEcC
Q 001236 345 FHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~ 361 (1117)
.+..++..+|+||++|-
T Consensus 37 ~~~~~~~~~~~iyv~GG 53 (315)
T 4asc_A 37 NHVSLVTKENQVFVAGG 53 (315)
T ss_dssp SEEEEECTTCCEEEEEE
T ss_pred cceEEEEECCEEEEEcC
Confidence 34444456899999985
No 146
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=64.22 E-value=13 Score=37.87 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=37.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
.+..+++++++.|+.+..+|+..++.|+++.+..+.++..++.
T Consensus 42 ~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 42 VMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999888888888877
No 147
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=63.90 E-value=1.5e+02 Score=31.25 Aligned_cols=195 Identities=10% Similarity=-0.026 Sum_probs=100.0
Q ss_pred CCCeEEEEecCC-----eEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC--eeEEEc
Q 001236 334 MTSVDFVTCGEF-----HTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW--HTALIT 406 (1117)
Q Consensus 334 ~~~I~~Va~G~~-----hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~--HtlaLt 406 (1117)
...|..|+.... ..+.-..||.|++|-... .+. .....+.. ....|..|+.... +.+...
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~--~~~---------~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD--SGQ---------TIPKAQQM--HTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT--TSC---------EEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC--CCc---------eeEEEecc--ccCCEEEEEECcCCCEEEEEc
Confidence 456888887654 344456789999995541 011 11122221 1235666665433 455557
Q ss_pred cCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEee--CCceEEEEEEeeecccccccCCceEEEecCCCCCC
Q 001236 407 STGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVAC--GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNR 484 (1117)
Q Consensus 407 ~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~Vac--G~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQ 484 (1117)
.+|.|..|-..... ...+.. ....|..++. ......+++- ..+|.|+.|-......
T Consensus 106 ~dg~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~---------~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 106 CDKTAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTG---------SWDKTLKFWDTRSSNP 163 (368)
T ss_dssp TTSEEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEE---------ETTSEEEEECSSCSSC
T ss_pred CCCcEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEc---------cCCCcEEEEECCCCcE
Confidence 78999999643211 111111 1224555554 3333333321 5689999996432111
Q ss_pred CCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeec-ccCCCCeEEEE
Q 001236 485 LGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVED-KLAGESVEEIA 563 (1117)
Q Consensus 485 LG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~-~l~~~~V~~Is 563 (1117)
+ ..+. ....+..+..-....++.+.+|.++.|-...... ....+.. ......+..+.
T Consensus 164 ~-----------~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 221 (368)
T 3mmy_A 164 M-----------MVLQ--LPERCYCADVIYPMAVVATAERGLIVYQLENQPS---------EFRRIESPLKHQHRCVAIF 221 (368)
T ss_dssp S-----------EEEE--CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE---------EEEECCCSCSSCEEEEEEE
T ss_pred E-----------EEEe--cCCCceEEEecCCeeEEEeCCCcEEEEEeccccc---------hhhhccccccCCCceEEEc
Confidence 0 1111 1224566666667788888899999997643211 0001100 00112233344
Q ss_pred eCCCc----ceeeecCCeEEEEeCCC
Q 001236 564 CGAYH----VAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 564 ~G~~H----t~aLT~dG~Vy~WG~n~ 585 (1117)
..... .++-..+|.|..|-...
T Consensus 222 ~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 222 KDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ccCCCCCCeEEEecCCCcEEEEecCC
Confidence 33333 55567899999997653
No 148
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=63.75 E-value=27 Score=36.78 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ-EAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~-e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
...+.+++-+..|..++.+|.-|+..|.++=.....+|.++.|+=+ ++..+-+.|.-+.|-++.-+-.+.+||..++=+
T Consensus 7 ~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~r 86 (218)
T 3frt_A 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMG 86 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999888887777788887777633 566667777766666666666666677766655
Q ss_pred C
Q 001236 903 L 903 (1117)
Q Consensus 903 ~ 903 (1117)
|
T Consensus 87 l 87 (218)
T 3frt_A 87 M 87 (218)
T ss_dssp H
T ss_pred H
Confidence 4
No 149
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=63.70 E-value=25 Score=28.98 Aligned_cols=48 Identities=27% Similarity=0.388 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhh
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA---MAVAAEESSKAKA 884 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~---~~~a~~e~~~~ka 884 (1117)
..++.+|+..++.++.++.....+++.+++++.++ +.-++++-.|+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888777776653 3344444444443
No 150
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=63.62 E-value=21 Score=40.13 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=34.5
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
+..+|.|.+.++.+++-|.|.+.++.+.|+..|+.+|..
T Consensus 288 ~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 326 (353)
T 1kz7_A 288 DTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTS 326 (353)
T ss_dssp BTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 357899999877789999999999999999999988843
No 151
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=63.60 E-value=21 Score=42.02 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=23.1
Q ss_pred ccceeEEE-eeh-hcc---ChhhHHHHHH---HhHhHHHhhhccc
Q 001236 1056 TRDLKRVR-FSR-RRF---GEHQAETWWS---ENREKVYERYNVR 1092 (1117)
Q Consensus 1056 ~~~~~rv~-fs~-~~f---~~~~a~~ww~---~n~~~~~~~~~~~ 1092 (1117)
++.|-||| |.. ++| ...++..+.+ ++.++|++...++
T Consensus 289 t~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLp 333 (485)
T 3qne_A 289 AWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLP 333 (485)
T ss_dssp CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 46777774 664 555 2445655544 4778888887655
No 152
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=63.51 E-value=24 Score=40.33 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=34.6
Q ss_pred CCCceEEEEEcC---CcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 86 KDYLSFSLIYNN---GKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 86 ~~~~~FSIiy~~---~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
.+...|-|++.. ..++.-|.|.+.+|.+.|+..|+..+..+
T Consensus 367 ~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~ 410 (418)
T 3t06_A 367 TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 410 (418)
T ss_dssp SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred ccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 456799999964 23799999999999999999999998654
No 153
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=62.82 E-value=1.9e+02 Score=32.18 Aligned_cols=259 Identities=9% Similarity=0.004 Sum_probs=118.6
Q ss_pred EEEEEecC---ceEEEEEcCCcEEEEeCCCCCccCCCCCCceecc-EEeccCCCCCeEEEEe---cCCeEEEEEcCCcEE
Q 001236 285 VHHIACGV---RHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQP-HLLESLTMTSVDFVTC---GEFHTCAVTMAGELY 357 (1117)
Q Consensus 285 I~~Ia~G~---~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P-~~V~~l~~~~I~~Va~---G~~hs~aLT~dG~Vy 357 (1117)
|..|+... ...+..+.+|.|+.|-......... ......+ ..+.. ....|..++. |..+.+.-..+|.|+
T Consensus 131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 44455543 2344446789999997654211100 0000111 11111 1223444443 333555566789999
Q ss_pred EEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEec---CCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccce
Q 001236 358 TWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCG---PWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPR 434 (1117)
Q Consensus 358 sWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G---~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~ 434 (1117)
+|-.... ... .....+.... ......|..|+.. ....+....+|.|+.|-....... .+.
T Consensus 208 vwd~~~~--~~~-----~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~---------~~~ 270 (430)
T 2xyi_A 208 LWDINAT--PKE-----HRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS---------KPS 270 (430)
T ss_dssp EEETTSC--CBG-----GGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS---------SCS
T ss_pred EEeCCCC--CCC-----Cceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC---------cce
Confidence 9966521 100 0111111111 1123357777763 334445567999999975432110 111
Q ss_pred eecccccceEEEEeeCCc--eEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe
Q 001236 435 EVESLSGLRTIAVACGVW--HTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVAC 512 (1117)
Q Consensus 435 ~V~~l~~~kI~~VacG~~--Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~ 512 (1117)
.........|..|+.... +.++.. ..+|.|..|-....++ |..........|..|+.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg----------~~dg~v~vwd~~~~~~-----------~~~~~~~h~~~v~~i~~ 329 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATG----------SADKTVALWDLRNLKL-----------KLHSFESHKDEIFQVQW 329 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEE----------ETTSEEEEEETTCTTS-----------CSEEEECCSSCEEEEEE
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEE----------eCCCeEEEEeCCCCCC-----------CeEEeecCCCCEEEEEE
Confidence 111111223555554332 233332 4688999997643221 11111112335666665
Q ss_pred cC---cEEEEEecCCeEEEEeCCCCCCCCCCCC-CCCcceeeecc-cCCCCeEEEEeCCCc---ceeeecCCeEEEEeCC
Q 001236 513 GH---SLTVGLTTSGHVFTMGSTVYGQLGNPNA-DGKLPCLVEDK-LAGESVEEIACGAYH---VAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 513 G~---~htlaLT~dG~Vy~wGsN~~GQLG~~~~-~~~~P~~v~~~-l~~~~V~~Is~G~~H---t~aLT~dG~Vy~WG~n 584 (1117)
.. ...+.-..+|.|..|-....+....... ....|..+... -....|..++..... .+....+|.|..|-..
T Consensus 330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 42 3355556788999997654322110000 00011222211 123457777765443 3334578999999754
No 154
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=62.79 E-value=13 Score=44.83 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCC---Cccccccee--eecccccCChhHhhhcCCCCCCceEEEEEcCC
Q 001236 24 GAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSG---ERSLKLASV--SKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG 98 (1117)
Q Consensus 24 Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~---~~~l~l~~I--~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~ 98 (1117)
|...++...+++.+.|++.|-.|..-+.=.++.+ ...+++..+ .++..|.. ....-..+|-|+...+
T Consensus 410 G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~y~~k~~i~L~~~~v~~~~~~~~--------~~~~~~~~f~i~~~~~ 481 (587)
T 3ky9_A 410 GELKITSVERRSKMDRYAFLLDKALLICKRRGDSYDLKDFVNLHSFQVRDDSSGDR--------DNKKWSHMFLLIEDQG 481 (587)
T ss_dssp EEEEEECSSCCSCEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGEEEEEC-------------CCCTTCEEEEEEETTC
T ss_pred eeEEEEeccCCCcceEEEEEECCEEEEEEecCCEEEeeeeechhhceeeecCCCCc--------ccccccceeEEEEcCC
Confidence 4443333445677889999988855443222111 122333332 22222210 1122346899999776
Q ss_pred cceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 99 KRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 99 ~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
.+++-|.|.+.+|.+.|+..|+..+...
T Consensus 482 ~~~~~L~A~S~eeK~~Wi~~I~~ai~~~ 509 (587)
T 3ky9_A 482 AQGYELFFKTRELKKKWMEQFEMAISNI 509 (587)
T ss_dssp ---CEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999999543
No 155
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.69 E-value=15 Score=43.08 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKK---AQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~---~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
+-.+|+.+++.|+.+......+|.+.+++ +++.++-+++=.++-|+.++-++.+.++|.++.-+||
T Consensus 39 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 39 EWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444445555555555555555443322 1222223333333344444444444445555555555
No 156
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=62.42 E-value=26 Score=33.72 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=33.3
Q ss_pred CCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 86 KDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 86 ~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
....||-|........-=|-|.++++++.|+..|+.-+...
T Consensus 74 ~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 74 EHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp TSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred CCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 35679999865445778899999999999999999887543
No 157
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=62.36 E-value=1.6e+02 Score=31.04 Aligned_cols=119 Identities=10% Similarity=-0.014 Sum_probs=55.1
Q ss_pred CEEEEEec--CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec--CCeEEEEEcC-----C
Q 001236 284 DVHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG--EFHTCAVTMA-----G 354 (1117)
Q Consensus 284 ~I~~Ia~G--~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~d-----G 354 (1117)
.|..|+.. ..+.+....+|.|+.|-......+ ..+. ....|..++.. ..+.++...+ |
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g 142 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-----------ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPG 142 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-----------EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEee--cCCCeEEEEEccCCCEEEEecCCccCCCC
Confidence 45566654 455666678999999964431110 1111 12345555543 2344444555 8
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEec--CCeeEEEccCCcEEEEeCC
Q 001236 355 ELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCG--PWHTALITSTGQLFTFGDG 417 (1117)
Q Consensus 355 ~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G--~~HtlaLt~dG~Vy~wG~N 417 (1117)
.|+.|-.... .....-..........+........|..++.. ..+.++.+.+|.|+.|-..
T Consensus 143 ~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 143 SINIYEIERD--SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp EEEEEEEEEC--TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EEEEEEecCC--ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 8888864411 11000000000001111111111245555443 3345555778888888643
No 158
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=61.30 E-value=1.9e+02 Score=31.62 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=60.3
Q ss_pred EEEecCceEEEE---EcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec---CCeEEEEEcCCcEEEEc
Q 001236 287 HIACGVRHAALV---TRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG---EFHTCAVTMAGELYTWG 360 (1117)
Q Consensus 287 ~Ia~G~~Hs~~L---T~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G---~~hs~aLT~dG~VysWG 360 (1117)
.+++.....+++ ..+|.|+.|-....|++.... + .+.. ....|..++.. ....+.-..||.|.+|-
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~------~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV------P-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC------C-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC------c-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 366666666555 458999999766555432110 0 0111 12356667663 34555556799999996
Q ss_pred CCCCCCCccCCCCCcceeee-eeecCCCCCCcEEEEEecCC---eeEEEccCCcEEEEeCC
Q 001236 361 DGTHNAGLLGHGTDVSHWIP-KRISGPLEGLQVASVTCGPW---HTALITSTGQLFTFGDG 417 (1117)
Q Consensus 361 ~n~~~~GqLG~g~~~~~~~P-~~V~~~l~~~~Iv~Va~G~~---HtlaLt~dG~Vy~wG~N 417 (1117)
... .+... ....+ ..+.+ ....|..|+.... ..+.-..+|.|+.|-..
T Consensus 111 ~~~--~~~~~-----~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 111 IPD--GGLVL-----PLREPVITLEG--HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp CCT--TCCSS-----CBCSCSEEEEC--CSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred ccC--CCCcc-----ccCCceEEecC--CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence 541 11110 00011 11111 2335777766544 34444678999999643
No 159
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=61.06 E-value=47 Score=33.07 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~ 900 (1117)
.+-.+|..|..+++....+++..+..++++++.++..-.-...+-.|.++..+-+...-+.|..|.
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~ 139 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELL 139 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344566666666777777777777888888888877666666666777777777777666776664
No 160
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=60.89 E-value=20 Score=35.22 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=32.8
Q ss_pred CCCceEEEEEcC----CcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 86 KDYLSFSLIYNN----GKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 86 ~~~~~FSIiy~~----~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
....+|+|.-.. ..+++.|-|.+.+|.+.|+..|+.-|.
T Consensus 80 ~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 80 YYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp SCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 356899998854 257899999999999999999998873
No 161
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=60.40 E-value=1.9e+02 Score=31.20 Aligned_cols=122 Identities=8% Similarity=0.049 Sum_probs=62.8
Q ss_pred CCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecC---------CeEEEEEcC
Q 001236 283 LDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGE---------FHTCAVTMA 353 (1117)
Q Consensus 283 ~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~---------~hs~aLT~d 353 (1117)
..|..|+......+.-..+|.|+.|-...... .........+.. ....|..++... .+.+....+
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 45777887777777778899999997544210 000111112221 234566665432 344455678
Q ss_pred CcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCC---CCcEEEEEec------CCe-eEEEccCCcEEEEeCCC
Q 001236 354 GELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLE---GLQVASVTCG------PWH-TALITSTGQLFTFGDGT 418 (1117)
Q Consensus 354 G~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~---~~~Iv~Va~G------~~H-tlaLt~dG~Vy~wG~N~ 418 (1117)
|.|++|-... +. .........+..... ...|..++.. ..+ .+....+|.|+.|-...
T Consensus 91 g~i~iw~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 91 GDLLFYRITR---ED-----ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp SCEEEEEEEE---CT-----TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCEEEEEccC---Cc-----ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9999995431 11 000000122221100 2356666554 334 45557889999996443
No 162
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.29 E-value=21 Score=34.85 Aligned_cols=23 Identities=30% Similarity=0.705 Sum_probs=21.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHHH
Q 001236 98 GKRSLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 98 ~~rtLDLva~~~~ea~~Wv~GL~ 120 (1117)
+.++.-|-|.++++++.|+.+|+
T Consensus 86 g~r~y~l~cdsEeqy~~WMaA~r 108 (137)
T 2ys3_A 86 GMSEIYLRCQDEQQYARWMAGCR 108 (137)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHH
T ss_pred CceEEEEECCCHHHHHHHHHHHH
Confidence 56899999999999999999998
No 163
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=59.95 E-value=2.9e+02 Score=33.28 Aligned_cols=231 Identities=10% Similarity=-0.019 Sum_probs=109.2
Q ss_pred CEEEEEec--CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEe--cCCeEEEEEcCCcEEEE
Q 001236 284 DVHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTC--GEFHTCAVTMAGELYTW 359 (1117)
Q Consensus 284 ~I~~Ia~G--~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~--G~~hs~aLT~dG~VysW 359 (1117)
.|..|+.. +...++...+|.|+.|-...... ...+.. ....|..++. .....++.+.+|.|++|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------VRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------EEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------EEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 34555544 33444556788899996433111 111111 1234555543 33445556779999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC--eeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 001236 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW--HTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVE 437 (1117)
Q Consensus 360 G~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~--HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~ 437 (1117)
-... +. ....+.. ....|..++.... +.+..+.+|.|..|-...... ....+.
T Consensus 83 ~~~~---~~----------~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~----------~~~~~~ 137 (814)
T 3mkq_A 83 NYNT---GE----------KVVDFEA--HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA----------LEQTFE 137 (814)
T ss_dssp ETTT---CC----------EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----------EEEEEE
T ss_pred ECCC---Cc----------EEEEEec--CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----------EEEEEc
Confidence 6441 10 1111111 1234666665433 344456788888885322100 011111
Q ss_pred ccccceEEEEeeCC-ceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe----
Q 001236 438 SLSGLRTIAVACGV-WHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVAC---- 512 (1117)
Q Consensus 438 ~l~~~kI~~VacG~-~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~---- 512 (1117)
. ....|..++... ....+++ ...+|.|+.|-...... ...+.......+..++.
T Consensus 138 ~-~~~~v~~~~~~p~~~~~l~~---------~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~ 196 (814)
T 3mkq_A 138 G-HEHFVMCVAFNPKDPSTFAS---------GCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLP 196 (814)
T ss_dssp C-CSSCEEEEEEETTEEEEEEE---------EETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECCST
T ss_pred C-CCCcEEEEEEEcCCCCEEEE---------EeCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEECC
Confidence 1 122455555443 2222221 15689999996432110 11111111122333333
Q ss_pred cCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCc--ceeeecCCeEEEEeCC
Q 001236 513 GHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYH--VAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 513 G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~H--t~aLT~dG~Vy~WG~n 584 (1117)
.....++...+|.|+.|-.... .....+. .....|..++..... .+.-..+|.|+.|-..
T Consensus 197 ~~~~l~~~~~dg~i~~~d~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 197 DKPYMITASDDLTIKIWDYQTK----------SCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp TCCEEEEECTTSEEEEEETTTT----------EEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEECCCC----------cEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 3445666677899999964321 1111111 123456666655443 3344568999999654
No 164
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.88 E-value=67 Score=30.46 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKD 887 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake 887 (1117)
+.-.++..||.||..+...--..+.||...+..+++--.--.+|.+++..+..
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~ 69 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAEN 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44567888888888777766666666665555554443334445555554443
No 165
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=59.73 E-value=25 Score=41.41 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=22.2
Q ss_pred cceeEEE-eeh-hcc---Chhh--HHHHHH---HhHhHHHhhhccc
Q 001236 1057 RDLKRVR-FSR-RRF---GEHQ--AETWWS---ENREKVYERYNVR 1092 (1117)
Q Consensus 1057 ~~~~rv~-fs~-~~f---~~~~--a~~ww~---~n~~~~~~~~~~~ 1092 (1117)
+.|-||| |.. ++| .+.| +..+.+ ++.++|++...++
T Consensus 311 ~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLp 356 (484)
T 3lss_A 311 LGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLP 356 (484)
T ss_dssp STTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 6777875 764 444 2344 555544 4677888886654
No 166
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=59.44 E-value=75 Score=27.96 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
-.|...-|.+++.+.++++++|++ -+.||..-++|+++.+.--..|-+.+..+ |..|....+||.+-|
T Consensus 9 eDKLRrrl~E~~~q~qaEl~sLrr----T~~EL~~G~~KL~~mi~~l~~E~~~l~~n---i~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 9 SDKLRWRMKEEMDRAQAELNALKR----TEEDLKKGHQKLEEMVTRLDQEVAEVDKN---IELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 345556788999999999999986 47789999999999988777766655544 556666777776543
No 167
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=59.16 E-value=17 Score=25.66 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
|.+||.+|++-|..|.++.+.+|.-+|
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888888888777777766554
No 168
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=58.84 E-value=38 Score=32.49 Aligned_cols=89 Identities=15% Similarity=0.268 Sum_probs=54.5
Q ss_pred CeEEEEecCCcC-eeEeEEEeCCCCEEEEecC----CCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCc
Q 001236 25 AQLLKYGRKGKP-KFYPFRLSNDETSLIWISS----SGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGK 99 (1117)
Q Consensus 25 t~llK~~r~~kp-k~r~f~Ls~d~~~l~W~s~----~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~ 99 (1117)
.+|+++..+-+. |++||+| |++.|..+.. +.-+.|+|++|..|.+-.+-... .......||=|+-.+
T Consensus 12 GW~VH~t~~d~~rKRHYWrL--D~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l----~~~~~~hcFEi~T~~-- 83 (125)
T 2coa_A 12 GWVVHYSNKDTLRKRHYWRL--DCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLV----PPGTNPHCFEIVTAN-- 83 (125)
T ss_dssp EEEEECCSSSCCCEEEEEEE--CSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSS----CTTSCCEEEEEECSS--
T ss_pred ceEEEEccCCccccceeeEe--cCCeEEEEecCCCCceeeeeehhHeeccccccccccc----CCCCCCceEEEEeCC--
Confidence 467888665443 5666665 4566766433 34578999999999885544311 122345899887643
Q ss_pred ceEEEEeC------------CHHHHHHHHHHHHHH
Q 001236 100 RSLDLICK------------DKVEAEVWIAGLKAL 122 (1117)
Q Consensus 100 rtLDLva~------------~~~ea~~Wv~GL~~L 122 (1117)
.+. +|.. ..+.++.|..+++.-
T Consensus 84 ~~y-yVg~~~~~~p~~~sg~g~~~a~~W~~aIrqA 117 (125)
T 2coa_A 84 ATY-FVGEMPGGTPGGPSGQGAEAARGWETAIRQA 117 (125)
T ss_dssp CCC-CEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred eEE-EEccCCCCCCCCcCccccHHHHHHHHHHHhh
Confidence 111 1221 137899999999843
No 169
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.80 E-value=16 Score=42.07 Aligned_cols=54 Identities=17% Similarity=0.390 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
|.+|+..|+.+.+.|+++.+..+.+++++++++.+ |. ..-|.|-+++.||..++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~-------~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIK-------EE-------TVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-------HHHHHHHHHHHHcCCCe
Confidence 34555555555555555555555444444444333 22 23466788899987765
No 170
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.66 E-value=24 Score=32.92 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHH
Q 001236 846 QVESLRQRCEFQEL---ELQKSTKKAQ 869 (1117)
Q Consensus 846 qv~~l~~~~~~~~~---~~~~~~~~~~ 869 (1117)
++..|+++..+++. .|+-+++|++
T Consensus 46 ~idelk~ei~q~~~~lE~I~vLkaQv~ 72 (110)
T 2v4h_A 46 LIDKLKEEAEQHKIVMETVPVLKAQAD 72 (110)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444 3444444443
No 171
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=57.78 E-value=19 Score=41.76 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=20.2
Q ss_pred cceeEEE-eeh-hcc--C-h--hhHHHH---HHHhHhHHHhhhccc
Q 001236 1057 RDLKRVR-FSR-RRF--G-E--HQAETW---WSENREKVYERYNVR 1092 (1117)
Q Consensus 1057 ~~~~rv~-fs~-~~f--~-~--~~a~~w---w~~n~~~~~~~~~~~ 1092 (1117)
+.|-|+| |.. ++| . . .++..| |-+...+|++...++
T Consensus 267 ~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~ 312 (421)
T 1ses_A 267 RGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 312 (421)
T ss_dssp CTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 4555665 553 333 2 2 466553 456677777777665
No 172
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.61 E-value=8.3 Score=46.38 Aligned_cols=38 Identities=37% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
++-|.+|+.+++.+++.|+++-++++..++..++++++
T Consensus 451 ~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 451 NEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488 (597)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444455555555555555555555555555444443
No 173
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.60 E-value=19 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
|.|.||..-|+.|-.+-..++.|+.|++..+.+
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 357888899999999888888898888887776
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=57.44 E-value=2e+02 Score=30.48 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=76.3
Q ss_pred CcEEEEEec-CCeeEEEccCCc-EEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeeccccc
Q 001236 390 LQVASVTCG-PWHTALITSTGQ-LFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSA 467 (1117)
Q Consensus 390 ~~Iv~Va~G-~~HtlaLt~dG~-Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~ 467 (1117)
-++.-..++ ....++++.+|+ ++.|+.... + ......|..+....+-.+. |+....+.+...+
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~l-v~~~~~~~v~~~d-------- 152 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYL-VPLFATSEVREIA-------- 152 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEE-EEETTTTEEEEEC--------
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEE-EEecCCCEEEEEC--------
Confidence 345545566 555667788887 566664211 0 0011122222222222333 3444445544432
Q ss_pred ccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCcEEEEEecC-Ce-EEEEeCCCCCCCCCCCCCCC
Q 001236 468 SVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHSLTVGLTTS-GH-VFTMGSTVYGQLGNPNADGK 545 (1117)
Q Consensus 468 ~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htlaLT~d-G~-Vy~wGsN~~GQLG~~~~~~~ 545 (1117)
.....+|.++... .|..+..+.+-++.-+..+....++++.+ |+ +|.++.+... | ..-.
T Consensus 153 -~~G~~~w~~~~~~-------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~--~---~~l~ 213 (276)
T 3no2_A 153 -PNGQLLNSVKLSG-------------TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE--G---VQLF 213 (276)
T ss_dssp -TTSCEEEEEECSS-------------CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB--S---CCCS
T ss_pred -CCCCEEEEEECCC-------------CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC--C---cccc
Confidence 2233466666521 12223333344555344444457777777 65 5677643211 0 0111
Q ss_pred cceeeecccCCCCeEEEEe--C---------CCcceeeecCCeEEEEeCCCCCCCCC
Q 001236 546 LPCLVEDKLAGESVEEIAC--G---------AYHVAVLTSRNEVYTWGKGANGRLGH 591 (1117)
Q Consensus 546 ~P~~v~~~l~~~~V~~Is~--G---------~~Ht~aLT~dG~Vy~WG~n~~GQLG~ 591 (1117)
.|.-+.. +.+..+. |+. | ..+.+.++.+|+| .|-.+...+.|.
T Consensus 214 ~~~~~~~-~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 214 FVAQLFP-LQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp EEEEEEE-CTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred ccccceE-cCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 2332222 2233333 333 2 3357788888886 676666666653
No 175
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=57.34 E-value=26 Score=27.95 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.||..|+-|. ..|..|++.|..+|+||+++.+=+++
T Consensus 8 kLKe~n~~L~-------~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 8 RLKQINIQLA-------TKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3555555443 35667778899999999999887654
No 176
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=57.09 E-value=24 Score=40.26 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=34.4
Q ss_pred CceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 88 YLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 88 ~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
..+|.|+...+.+++-|.|++++|.+.|+..|+..+...
T Consensus 299 ~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 337 (406)
T 2vrw_B 299 SHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNI 337 (406)
T ss_dssp CEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 478999987667889999999999999999999998544
No 177
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.94 E-value=88 Score=30.92 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhc
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE----------AMAVAAEESSKAKA-AKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e----------~~~~a~~e~~~~ka-ake~ik~lt~qlk~~~~~ 902 (1117)
+.+.+++..|+++...|++++..++.+|+.-.|-++. ...++.+...|.++ .++.|.-+-.+-..=||+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~ 143 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888888887765554442 23345555556665 667777777777777777
Q ss_pred CCCC
Q 001236 903 LPPG 906 (1117)
Q Consensus 903 ~~~~ 906 (1117)
+...
T Consensus 144 MN~a 147 (152)
T 3a7p_A 144 MNSE 147 (152)
T ss_dssp C---
T ss_pred HHHh
Confidence 7653
No 178
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=56.93 E-value=26 Score=31.84 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=9.3
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 001236 877 EESSKAKAAKDVIKSLTAQL 896 (1117)
Q Consensus 877 ~e~~~~kaake~ik~lt~ql 896 (1117)
+|.++.++..|-|..|.+|.
T Consensus 30 e~~~q~~~~~E~i~vLk~Qv 49 (94)
T 3jsv_C 30 EEAEQHKIVMETVPVLKAQA 49 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 179
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=56.82 E-value=77 Score=32.59 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA-------MAVAAEESSKAKAAK 886 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~-------~~~a~~e~~~~kaak 886 (1117)
+....-|-.|+.++..+...|+.++..+..|++..+.|++.+ +...-+|.++.+.++
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556667777777777777777777777777766655 444455555544443
No 180
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=56.38 E-value=47 Score=31.62 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=51.6
Q ss_pred eeEeEEEeCCCCEEE-------EecCCCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcC----CcceEEEE
Q 001236 37 KFYPFRLSNDETSLI-------WISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNN----GKRSLDLI 105 (1117)
Q Consensus 37 k~r~f~Ls~d~~~l~-------W~s~~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~----~~rtLDLv 105 (1117)
+.|.|-+|.|--.|. |....+..++.+++|..+..-++. ...|=||... +.|.-||.
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K~s~k~------------P~~FKivV~k~~~~e~KrYdfE 95 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVKKSKRV------------PEHFKIFVRREGQDDIKRYYFE 95 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEEECSSC------------TTEEEEEECCTTCSSCEEEEEE
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEEecccC------------CCcEEEEEEccCCCCcceeEEE
Confidence 557777776544443 444456667888888666554333 3556676632 35889999
Q ss_pred eCCHHHHHHHHHHHHHHH
Q 001236 106 CKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 106 a~~~~ea~~Wv~GL~~Li 123 (1117)
|.+++||..-|.-|+.+|
T Consensus 96 A~s~~ea~EIV~~ik~~~ 113 (121)
T 3ulb_A 96 AVSGQECTEIVTRLQNLL 113 (121)
T ss_dssp ESSHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHH
Confidence 999999999999999999
No 181
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.31 E-value=58 Score=30.05 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 001236 885 AKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 885 ake~ik~lt~qlk~~~~~~ 903 (1117)
+++.|..|.+++..+-+++
T Consensus 73 ~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577777877665555554
No 182
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=56.06 E-value=15 Score=42.26 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=52.8
Q ss_pred HhcCCeEEEEecC-CcCeeEeEEEeCCCCEEEEecCCCC---cccccceeeecccccCChhHhhhcCCCCCCceEEEEEc
Q 001236 21 LKKGAQLLKYGRK-GKPKFYPFRLSNDETSLIWISSSGE---RSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYN 96 (1117)
Q Consensus 21 L~~Gt~llK~~r~-~kpk~r~f~Ls~d~~~l~W~s~~~~---~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~ 96 (1117)
++.| +|.|-+.+ +.-|.|+|.|..|...+.|.+.... ..++|..+..+. +.. ...+.....||.|...
T Consensus 7 ~keG-~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~----~~~---~~~~~~~~~~f~I~~~ 78 (446)
T 4ejn_A 7 VKEG-WLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQ----CQL---MKTERPRPNTFIIRCL 78 (446)
T ss_dssp EEEE-EEEEEETTTTEEEEEEEEEETTSBEEEESSCC-------CCCGGGBCTT----CEE---EEECSSSTTEEEEEEE
T ss_pred EEEe-eEEeeccccccccceEEEEeeCCEEEEEecCCCCCccCcccccCccccc----eee---cCCCCCCCceeEEEcC
Confidence 3444 55566533 3337789999866665555333221 234444322110 000 0011222468999865
Q ss_pred CCcceE--EEEeCCHHHHHHHHHHHHHHHH
Q 001236 97 NGKRSL--DLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 97 ~~~rtL--DLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
+..+.+ -+.+.++++++.|+..|+..+.
T Consensus 79 ~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~ 108 (446)
T 4ejn_A 79 QWTTVIERTFHVETPEEREEWTTAIQTVAD 108 (446)
T ss_dssp ETTEEEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCceeeeeEEecCCHHHHHHHHHHHHhhhh
Confidence 432222 5788999999999999998874
No 183
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=55.78 E-value=40 Score=43.75 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
|+.++.++|++|+++.+.++.+++++.
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 184
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=55.71 E-value=24 Score=40.74 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
+-|.+|+..|+.+++.|.++.+++..|++..++++.+ ||.. -|.|-+++.+|.+++-
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~------~~~~--------rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ------SNME--------RKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------HHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH--------HHHHHHHHHHhCCCEE
Confidence 5678888889988888888888888888888877644 3322 4678889999887653
No 185
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=55.43 E-value=31 Score=32.46 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESL--RQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l--~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
+.......-..+|...+.+++..+ .+..+....+|+++++-+.+|...-- +=+-|.+-+.|+.|+++|.+...+|-
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r~~l~ 108 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERRRGLQ 108 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666667788888888888776 66688888999999999998753321 12467888899999999999988876
Q ss_pred C
Q 001236 905 P 905 (1117)
Q Consensus 905 ~ 905 (1117)
|
T Consensus 109 P 109 (111)
T 2l3l_A 109 P 109 (111)
T ss_dssp C
T ss_pred C
Confidence 6
No 186
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=55.22 E-value=52 Score=33.65 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=23.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
..++..|..-|..|+|++.....+++.|++|.+.++.++.
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456666666666666666555566666655555555553
No 187
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=55.18 E-value=57 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAE 877 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~ 877 (1117)
++..++-++|.+|.+|..+.+.+|.++..++.+|..--.+
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666678888888888888888888888877654433
No 188
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=54.87 E-value=26 Score=41.37 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
+-.+|+.+++.|+.+......+|.+.++
T Consensus 45 ~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 45 KWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555555544433
No 189
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=54.85 E-value=52 Score=31.88 Aligned_cols=103 Identities=21% Similarity=0.352 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCeEE-EEecCCcCeeEeEEEeCCCCEEEEecCCCCcccccceeeeccc---ccCChhHhhhcCCCCCCc
Q 001236 14 IEQALIALKKGAQLL-KYGRKGKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIP---GQRTAVFQRYLRPEKDYL 89 (1117)
Q Consensus 14 ~~~~l~~L~~Gt~ll-K~~r~~kpk~r~f~Ls~d~~~l~W~s~~~~~~l~l~~I~eI~~---G~~t~~f~r~~~~~~~~~ 89 (1117)
-|.-|+.|.+|+.|+ .++..-++....+||+.|.+.|...... ...|.|+.|..|+. |-... ....-.-
T Consensus 11 yDKqLKvLl~GatF~Vs~~~sek~e~~vCrLS~nhR~L~ldgds-h~eIels~I~~vqiL~eg~~~g------gg~~ras 83 (141)
T 2rrf_A 11 YDKQLKVLLSGATFLVTFGNSEKPETMTCRLSNNQRYLFLDGDS-HYEIEIVHISTVQILTEGFPPG------GGNARAT 83 (141)
T ss_dssp HHHHHHHHHHCEEEEECCSSCCSCEEEEEEECTTSSEEEEESSS-EEEEETTTCCCEECCCCSSCSS------SSSCCCS
T ss_pred HHHHHHHHhCCceEEEeccCCCCCceEEEEecCCeeEEEEcCCC-CCcEEeeeeeEEEEeccCCCCC------CCcceee
Confidence 467889999986655 4577778899999999999999885433 45677777766644 33311 1111233
Q ss_pred eEEEEEcCCc----ceEE-EEeCC----HHHHHHHHHHHHHHH
Q 001236 90 SFSLIYNNGK----RSLD-LICKD----KVEAEVWIAGLKALI 123 (1117)
Q Consensus 90 ~FSIiy~~~~----rtLD-Lva~~----~~ea~~Wv~GL~~Li 123 (1117)
-|.|-|+... .-|- +++.+ +..+-.|+..+..-+
T Consensus 84 Gm~l~Yk~~g~~~~~ql~lt~~~d~~~~kk~s~aWlaAm~KA~ 126 (141)
T 2rrf_A 84 GMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAA 126 (141)
T ss_dssp CCEEEECCTTSSSCEEEEEECCCSSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCCCccceeEEEEeeccccCcchhhhHHHHHHHHHHH
Confidence 4567776532 2233 34445 668889999987543
No 190
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=54.42 E-value=2.1e+02 Score=30.03 Aligned_cols=109 Identities=10% Similarity=-0.060 Sum_probs=59.7
Q ss_pred CEEEEEecCc------eEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec---CCeEEEEEcCC
Q 001236 284 DVHHIACGVR------HAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG---EFHTCAVTMAG 354 (1117)
Q Consensus 284 ~I~~Ia~G~~------Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G---~~hs~aLT~dG 354 (1117)
.|..++.... ..+.-..+|.|+.|-...... ...+.. ....|..++.. ....+....||
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg 138 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----------IKHYVG-HGNAINELKFHPRDPNLLLSVSKDH 138 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----------EEEEES-CCSCEEEEEECSSCTTEEEEEETTS
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----------eeeecC-CCCcEEEEEECCCCCCEEEEEeCCC
Confidence 4555555433 455667889999996433110 111111 23467777764 34556667899
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecC-CCCCCcEEEEEecC--CeeEEEccCCcEEEEeCC
Q 001236 355 ELYTWGDGTHNAGLLGHGTDVSHWIPKRISG-PLEGLQVASVTCGP--WHTALITSTGQLFTFGDG 417 (1117)
Q Consensus 355 ~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~-~l~~~~Iv~Va~G~--~HtlaLt~dG~Vy~wG~N 417 (1117)
.|++|-... +. ....+.. ......|..|+... .+.+....+|.|+.|-..
T Consensus 139 ~i~iwd~~~---~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 139 ALRLWNIQT---DT----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp CEEEEETTT---TE----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred eEEEEEeec---Ce----------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 999995431 10 1111100 11234577777643 345555678999999654
No 191
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=54.40 E-value=2.1e+02 Score=29.98 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=12.0
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|++++ .+++||++|-.
T Consensus 55 ~~~~~~-~~~~l~v~GG~ 71 (301)
T 2vpj_A 55 YVASVS-LHDRIYVIGGY 71 (301)
T ss_dssp SCEEEE-ETTEEEEECCB
T ss_pred cccEEE-ECCEEEEEcCC
Confidence 455555 47899999864
No 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.37 E-value=33 Score=40.46 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=36.1
Q ss_pred chhhhhhHHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHH
Q 001236 823 KSITDSLKKTNE--LLNQEVLKL-------RAQVESLRQRCEFQELELQKSTKK---AQEAMAVAAEESSKAKAAKDVIK 890 (1117)
Q Consensus 823 ~~~~~~~~~~~~--~l~~ev~~l-------~~qv~~l~~~~~~~~~~~~~~~~~---~~e~~~~a~~e~~~~kaake~ik 890 (1117)
..+.+.+++-+. .+..+|..| +.+++.|+.+......+|.+.+++ +++.++-+++=.++.++.++-++
T Consensus 16 ~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~ 95 (485)
T 3qne_A 16 EIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEA 95 (485)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555442 134444444 445555555555555555443332 12222222222333344444444
Q ss_pred HHHHHHHHHHhcCC
Q 001236 891 SLTAQLKDMAERLP 904 (1117)
Q Consensus 891 ~lt~qlk~~~~~~~ 904 (1117)
.|.++|.++.-+||
T Consensus 96 ~~~~~~~~~l~~iP 109 (485)
T 3qne_A 96 EADKNLRSKINQVG 109 (485)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhCC
Confidence 44445555555555
No 193
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=54.25 E-value=2e+02 Score=29.57 Aligned_cols=186 Identities=11% Similarity=-0.004 Sum_probs=98.3
Q ss_pred CCEEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEe---cCCeEEEEEcCCcEEEE
Q 001236 283 LDVHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTC---GEFHTCAVTMAGELYTW 359 (1117)
Q Consensus 283 ~~I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~---G~~hs~aLT~dG~VysW 359 (1117)
..|..|+......+....+|.|+.|-. + .+..........|..+.. .....+....+|.|+.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 457778887778888889999999951 1 011111112234555543 45667777889999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC-CeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecc
Q 001236 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP-WHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVES 438 (1117)
Q Consensus 360 G~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~-~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~ 438 (1117)
-.. .+...........|..++... ...++...+|.|+.|-...... ...+..
T Consensus 171 d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-----------~~~~~~ 223 (313)
T 3odt_A 171 QND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV-----------LRTYEG 223 (313)
T ss_dssp ETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE-----------EEEEEC
T ss_pred ecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh-----------hhhhhc
Confidence 421 011111111233455554422 2355567889999996533111 011111
Q ss_pred cccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCc-EE
Q 001236 439 LSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHS-LT 517 (1117)
Q Consensus 439 l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~-ht 517 (1117)
....|..++......++. ...+|.|+.|-.... .+..........|..++...+ ..
T Consensus 224 -~~~~i~~~~~~~~~~l~~----------~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 224 -HESFVYCIKLLPNGDIVS----------CGEDRTVRIWSKENG------------SLKQVITLPAISIWSVDCMSNGDI 280 (313)
T ss_dssp -CSSCEEEEEECTTSCEEE----------EETTSEEEEECTTTC------------CEEEEEECSSSCEEEEEECTTSCE
T ss_pred -CCceEEEEEEecCCCEEE----------EecCCEEEEEECCCC------------ceeEEEeccCceEEEEEEccCCCE
Confidence 122455665544432222 156899999964321 111111112335666665322 35
Q ss_pred EEEecCCeEEEEeCC
Q 001236 518 VGLTTSGHVFTMGST 532 (1117)
Q Consensus 518 laLT~dG~Vy~wGsN 532 (1117)
++...+|.|+.|-..
T Consensus 281 ~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 281 IVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEETTSCEEEEESC
T ss_pred EEEeCCCcEEEEeCC
Confidence 566788999998754
No 194
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=53.79 E-value=59 Score=28.69 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
.+++ +-|.|||..||--|+.|..+--|-|.+|.-
T Consensus 18 ~~~~-E~L~qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 18 QRKA-EELLQELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444 468899999999888887776665554433
No 195
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=53.69 E-value=2.3e+02 Score=30.27 Aligned_cols=250 Identities=6% Similarity=-0.020 Sum_probs=119.0
Q ss_pred CCCEEEEEe---cCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecC-----CeEEEEEcC
Q 001236 282 VLDVHHIAC---GVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGE-----FHTCAVTMA 353 (1117)
Q Consensus 282 ~~~I~~Ia~---G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~-----~hs~aLT~d 353 (1117)
...|..|+. +....+....+|.|+.|-...... ...+. . ...+..+.... ...++-..+
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------ADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------EEEEE-C-SSCEEEEEECSSCSSCCEEEEEESS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------ceecc-C-CCceeeeEeecCCCCCcEEEEEcCC
Confidence 345777776 445666777899999996443110 01111 1 23344444432 245566789
Q ss_pred CcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCe---eEEEccCCcEEEEeCCCCCCcCC----CC
Q 001236 354 GELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWH---TALITSTGQLFTFGDGTFGVLGH----GD 426 (1117)
Q Consensus 354 G~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~H---tlaLt~dG~Vy~wG~N~~GQLG~----g~ 426 (1117)
|.|+.|-... +. ....+. .....|..++..... .+.-..+|.|+.|-.......-. ..
T Consensus 166 ~~v~~~d~~~---~~----------~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 166 PKVQLCDLKS---GS----------CSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp SSEEEEESSS---SC----------CCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred CeEEEEeCCC---cc----------eeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 9999995441 10 011111 122356666654432 44557889999997543221100 00
Q ss_pred CCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCC
Q 001236 427 RKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYN 506 (1117)
Q Consensus 427 ~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~ 506 (1117)
......+..........|..++.......+++- ..+|.|+.|-......+-..... ..........
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~ 296 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV---------GTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKGLK 296 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE---------ETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSCCC
T ss_pred cccceeeccccccccCceeEEEEcCCCCEEEEe---------cCCCeEEEEECCCCccceecccc-----ccccccccce
Confidence 000000000001122346666665444333321 46889999976442221110000 0000011112
Q ss_pred EEEEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCc--ceeeecCCeEEEEeCC
Q 001236 507 FHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYH--VAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 507 I~~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~H--t~aLT~dG~Vy~WG~n 584 (1117)
+..........++...+|.|+.|-..... ....+. .....|..++..... .+.-..+|.|+.|-..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 297 FTVSCGCSSEFVFVPYGSTIAVYTVYSGE----------QITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CEECCSSSSCEEEEEETTEEEEEETTTCC----------EEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred eEEecCCCceEEEEecCCEEEEEECcCCc----------ceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 22222334455666778999999754211 111111 123456666655443 3444578999999765
Q ss_pred C
Q 001236 585 A 585 (1117)
Q Consensus 585 ~ 585 (1117)
.
T Consensus 365 ~ 365 (408)
T 4a11_B 365 L 365 (408)
T ss_dssp C
T ss_pred C
Confidence 4
No 196
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=53.40 E-value=2.1e+02 Score=29.65 Aligned_cols=231 Identities=11% Similarity=0.039 Sum_probs=108.5
Q ss_pred EEEEEec--CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEecc-CCCCCeEEEEecC--CeEEEEEcCCcEEEE
Q 001236 285 VHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLES-LTMTSVDFVTCGE--FHTCAVTMAGELYTW 359 (1117)
Q Consensus 285 I~~Ia~G--~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~-l~~~~I~~Va~G~--~hs~aLT~dG~VysW 359 (1117)
|..++.. .... +...+|.|..|-........ ....+.. .....|..++... ...++...+|.|+.|
T Consensus 54 v~~~~~~~~~~~l-~~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 54 VCAVTISNPTRHV-YTGGKGCVKVWDISHPGNKS--------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp CCEEEECSSSSEE-EEECBSEEEEEETTSTTCCS--------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eEEEEEecCCcEE-EEcCCCeEEEEECCCCCcee--------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 4444443 3333 33348889999654422110 0011110 1224566665543 344555678999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC--CeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeec
Q 001236 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP--WHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVE 437 (1117)
Q Consensus 360 G~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~--~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~ 437 (1117)
-.... . ......+. .....|..++... .+.+..+.+|.|+.|-..... ....+.
T Consensus 125 d~~~~---~--------~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-----------~~~~~~ 180 (337)
T 1gxr_A 125 DLAAP---T--------PRIKAELT--SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-----------LVRQFQ 180 (337)
T ss_dssp ECCCC-------------EEEEEEE--CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------EEEEEC
T ss_pred ECCCC---C--------cceeeecc--cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeee
Confidence 54310 0 00011111 1223466665533 345555678899988643211 011111
Q ss_pred ccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEec--Cc
Q 001236 438 SLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACG--HS 515 (1117)
Q Consensus 438 ~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G--~~ 515 (1117)
. ....|..++.......+++ ...+|.|+.|-......+ ..+. ....+..++.. ..
T Consensus 181 ~-~~~~i~~~~~~~~~~~l~~---------~~~dg~i~~~d~~~~~~~-----------~~~~--~~~~v~~~~~s~~~~ 237 (337)
T 1gxr_A 181 G-HTDGASCIDISNDGTKLWT---------GGLDNTVRSWDLREGRQL-----------QQHD--FTSQIFSLGYCPTGE 237 (337)
T ss_dssp C-CSSCEEEEEECTTSSEEEE---------EETTSEEEEEETTTTEEE-----------EEEE--CSSCEEEEEECTTSS
T ss_pred c-ccCceEEEEECCCCCEEEE---------EecCCcEEEEECCCCceE-----------eeec--CCCceEEEEECCCCC
Confidence 1 1224555555433222221 146889999964321110 0111 12345544432 33
Q ss_pred EEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCC--cceeeecCCeEEEEeCC
Q 001236 516 LTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAY--HVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 516 htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~--Ht~aLT~dG~Vy~WG~n 584 (1117)
..++-..+|.|+.|-..... . .........|..++.... ..++...+|.|+.|-..
T Consensus 238 ~l~~~~~~~~i~~~~~~~~~-----------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 238 WLAVGMESSNVEVLHVNKPD-----------K--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEEEETTSCEEEEETTSSC-----------E--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEEcCCCcEEEEECCCCC-----------e--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 45555667888888653210 1 111122355777766543 33444578999999754
No 197
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.08 E-value=34 Score=30.20 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 831 KTNELLNQEVLKLRA-------QVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 831 ~~~~~l~~ev~~l~~-------qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
++..++.+|+.+.|+ +++..+.+++-+..||++.+++++|
T Consensus 24 qAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 24 LTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777666 3444455555555666666666665
No 198
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.03 E-value=2.7e+02 Score=30.76 Aligned_cols=224 Identities=12% Similarity=-0.011 Sum_probs=113.7
Q ss_pred EEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecC-----CeEEEEEcCCcEEEEcC
Q 001236 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGE-----FHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~-----~hs~aLT~dG~VysWG~ 361 (1117)
..+....+.+++|+.|++|..-...--..+.. .........+....+.+|+.+.+.. ...+++|.+|-+.-.-.
T Consensus 48 ~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 48 FVCSTHDLILFFTTQGRVYRAKAYDLPEASRT-ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCSS-SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EEeCCCCEEEEEeCCCeEEEEEHHHCcCCCcc-CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 45566777888999999998864332211110 0111111233333567888877653 46888999998876543
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCCcEEEE--EecCCeeEEEccCCcEEEEeCC--CCCCcCCCCCCCcccceeec
Q 001236 362 GTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASV--TCGPWHTALITSTGQLFTFGDG--TFGVLGHGDRKNVSYPREVE 437 (1117)
Q Consensus 362 n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~V--a~G~~HtlaLt~dG~Vy~wG~N--~~GQLG~g~~~~~~~P~~V~ 437 (1117)
..+ -... . .-.......++..++.+ +.+..+.+++|++|++|.+-.. .--.+|....-. ..+.
T Consensus 127 ~~~--~~~~---r----~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~ 193 (327)
T 3uc1_A 127 TDF--DSNR---S----GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV----QGMR 193 (327)
T ss_dssp GGG--CCCC---S----SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSC
T ss_pred HHh--hccc---c----CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe----eeec
Confidence 311 0000 0 00111112234445543 4466788999999999999876 443333321110 1122
Q ss_pred ccccceEEEEeeCCce-EEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeeccc-C-CCCEEEE--Ee
Q 001236 438 SLSGLRTIAVACGVWH-TAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL-I-DYNFHKV--AC 512 (1117)
Q Consensus 438 ~l~~~kI~~VacG~~H-t~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l-~-~~~I~~I--a~ 512 (1117)
.-.+.+|+.+..-... .++++ |.+|.+.-.--.++-..+.+... .....+ . +..++.+ ..
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~----------T~~G~~Krt~l~e~~~~~R~~~G-----~~~~~l~~~~d~lv~~~~~~ 258 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVA----------TSGGYAKRTAIEEYPVQGRGGKG-----VLTVMYDRRRGRLVGALIVD 258 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEE----------ETTSEEEEEEGGGSCBCCTTSCC-----EESSCCCTTTCSEEEEEEEC
T ss_pred CCCCCEEEEEEEECCCCEEEEE----------eCCCcEEEEEHHHccccCcCCCc-----EEEEEecCCCCeEEEEEEeC
Confidence 2244566666554322 23222 45666554432222111111110 000001 0 1223333 23
Q ss_pred cCcEEEEEecCCeEEEEeCCCCCCCCC
Q 001236 513 GHSLTVGLTTSGHVFTMGSTVYGQLGN 539 (1117)
Q Consensus 513 G~~htlaLT~dG~Vy~wGsN~~GQLG~ 539 (1117)
+....+++|++|.+.-+-....-.+|.
T Consensus 259 ~~~~i~l~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 259 DDSELYAVTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp TTCEEEEEEGGGCEEEEEGGGSCBCCT
T ss_pred CCccEEEEcCCCeEEEEehhhccccCC
Confidence 667899999999999887665555554
No 199
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=52.88 E-value=83 Score=31.29 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHH--------------HHHHHHHHHHHHHH
Q 001236 852 QRCEFQELELQK-STKKAQEAMAVAAEESSKAKAAK--------------DVIKSLTAQLKDMA 900 (1117)
Q Consensus 852 ~~~~~~~~~~~~-~~~~~~e~~~~a~~e~~~~kaak--------------e~ik~lt~qlk~~~ 900 (1117)
++....+.||+. +..=++||-.|++++..++-+++ .+|++|..||++|-
T Consensus 79 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555653 33445789899888766554444 45556666655543
No 200
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=52.74 E-value=60 Score=36.26 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCceEEEEEcC---CcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 87 DYLSFSLIYNN---GKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 87 ~~~~FSIiy~~---~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
+..+|-|+... ..+++-|.|.+++|.+.|+..|+..+..
T Consensus 326 ~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 326 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 45789888853 2578999999999999999999987753
No 201
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=52.06 E-value=12 Score=43.59 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQK-STKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~-~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
++-.+|+.+++.|+.+......+|.+ ..+.+++.++-+++=.++-|+.++-++.+.++|.++.-+||
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444444555555555544444443 11112222233333333444444445555555555555555
No 202
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=52.00 E-value=86 Score=29.52 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001236 854 CEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKS 891 (1117)
Q Consensus 854 ~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~ 891 (1117)
.+-++-||..+.++|++ |.+|.++-++..++.++
T Consensus 73 vqeLqgEI~~Lnq~Lq~----a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD----ASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhhchhhhh
Confidence 44455667777788877 45555556665555443
No 203
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=51.99 E-value=2.1e+02 Score=29.29 Aligned_cols=222 Identities=8% Similarity=-0.072 Sum_probs=113.2
Q ss_pred cCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcCCCCCCCccC
Q 001236 291 GVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGDGTHNAGLLG 370 (1117)
Q Consensus 291 G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG 370 (1117)
...+.+.-..+|.|..|--..... ..+..........|..++......+....+|.|+.|-.+ .
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~-----~-- 133 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG-----S-- 133 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT-----E--
T ss_pred CCCEEEEecCCCeEEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC-----c--
Confidence 345555667788888775433110 001111111234677777777777788889999999411 0
Q ss_pred CCCCcceeeeeeecCCCCCCcEEEEEe---cCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEE
Q 001236 371 HGTDVSHWIPKRISGPLEGLQVASVTC---GPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAV 447 (1117)
Q Consensus 371 ~g~~~~~~~P~~V~~~l~~~~Iv~Va~---G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~V 447 (1117)
....+.. ....|..++. .....+....+|.|+.|-... ....+.......|..+
T Consensus 134 --------~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~~~~~~i~~~ 190 (313)
T 3odt_A 134 --------LVYNLQA--HNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKTFSGIHNDVVRHL 190 (313)
T ss_dssp --------EEEEEEC--CSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEEECSSCSSCEEEE
T ss_pred --------EEEeccc--CCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEEEeccCcccEEEE
Confidence 0111111 1224555543 455666678889999995110 0111111122234444
Q ss_pred eeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCc-EEEEEecCCeE
Q 001236 448 ACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHS-LTVGLTTSGHV 526 (1117)
Q Consensus 448 acG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~-htlaLT~dG~V 526 (1117)
+......++.. ..+|.|+.|-..... +..........|..++.... ..++...+|.|
T Consensus 191 ~~~~~~~~~~~----------~~dg~i~i~d~~~~~------------~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v 248 (313)
T 3odt_A 191 AVVDDGHFISC----------SNDGLIKLVDMHTGD------------VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTV 248 (313)
T ss_dssp EEEETTEEEEE----------ETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECTTSCEEEEETTSEE
T ss_pred EEcCCCeEEEc----------cCCCeEEEEECCchh------------hhhhhhcCCceEEEEEEecCCCEEEEecCCEE
Confidence 44333223321 568899999653211 11111112235666655432 45566778999
Q ss_pred EEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCC-cceeeecCCeEEEEeCCC
Q 001236 527 FTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAY-HVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 527 y~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~-Ht~aLT~dG~Vy~WG~n~ 585 (1117)
+.|-.... .....+. .....|..++.-.. ..++-..+|.|+.|-...
T Consensus 249 ~iwd~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 249 RIWSKENG----------SLKQVIT--LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEECTTTC----------CEEEEEE--CSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred EEEECCCC----------ceeEEEe--ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 99964321 1111111 22346777776443 345556889999997543
No 204
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=51.98 E-value=4.6 Score=48.88 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=36.1
Q ss_pred cCCCcceeEEeeecccchhhcccccccccc-cccccccccccCcceeccCCCC
Q 001236 616 CGSNYSAAICLHKWVSSAEQLQCSACRQAF-GFTRKRHNCYNCGLVHCHSCSS 667 (1117)
Q Consensus 616 cG~~hT~aL~~~kwvs~~d~s~Cs~C~~~F-~f~rkrh~C~~CG~v~C~~CSs 667 (1117)
.+..|.+... +-.....|..|+..+ ++.+..++|..||.++|..|..
T Consensus 515 ~~~~H~F~~~-----~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~ 562 (587)
T 3ky9_A 515 TANGHDFQMF-----SFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLG 562 (587)
T ss_dssp TGGGCCEEEE-----CCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGG
T ss_pred cccCCceeEE-----eCCCCcccccccccccccccCCcCCCCCCCccchhhhh
Confidence 3445655443 335567899999875 8889999999999999999964
No 205
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.68 E-value=69 Score=30.80 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=56.6
Q ss_pred HhcCCeEEEEe-cCCc-CeeEeEEEeCCC----CEEEEecCC--------CCcccccceeeecccccCChhHhhhcCCCC
Q 001236 21 LKKGAQLLKYG-RKGK-PKFYPFRLSNDE----TSLIWISSS--------GERSLKLASVSKIIPGQRTAVFQRYLRPEK 86 (1117)
Q Consensus 21 L~~Gt~llK~~-r~~k-pk~r~f~Ls~d~----~~l~W~s~~--------~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~ 86 (1117)
+++|-.++--- +.|| =+.|+|.|-++. .+|-.+... ..+-|.|+|=-.|.+.... ....+
T Consensus 13 vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e------~~~pk 86 (127)
T 2d9w_A 13 VKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGE------ASSPR 86 (127)
T ss_dssp SEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSC------SSSCS
T ss_pred ccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCc------cCCCC
Confidence 45666665442 3332 245567775542 344443321 1345778777666653221 01124
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
....|.|...+ |+.-|.|+. +|.+.|+..|-.|.
T Consensus 87 ~~~aF~l~T~e--r~~~laAe~-~E~~~Wi~~ic~~a 120 (127)
T 2d9w_A 87 DTSAFFLETKE--RLYLLAAPA-AERGDWVQAICLLA 120 (127)
T ss_dssp SCEEEEEEESS--CEEEEEECH-HHHHHHHHHHHHHH
T ss_pred cceEEEEEeCC--cEEEEEeCc-HHHHHHHHHHHHHh
Confidence 45788888865 889999995 59999999998776
No 206
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=51.56 E-value=4.9e+02 Score=33.34 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=39.4
Q ss_pred CEEEEEecC--cEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeec--ccCCCCeEEEEeCCCcceeeecCCeEEEE
Q 001236 506 NFHKVACGH--SLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVED--KLAGESVEEIACGAYHVAVLTSRNEVYTW 581 (1117)
Q Consensus 506 ~I~~Ia~G~--~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~--~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~W 581 (1117)
.|..++... ...+.-..+|.|+.|-......+..- .|..... ......|..++...+...+++.+|.|+.|
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vw 1203 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC-----APISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWW 1203 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCC-----CCCC-------CCSCCCEEEECTTSSCEEEESSSEEEB
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEe-----ccccccccccccCceEEEEEECCCCCEEEECCCeEEEE
Confidence 455554432 34444567888888875432222110 0111100 11234577777766666666667999999
Q ss_pred eCCC
Q 001236 582 GKGA 585 (1117)
Q Consensus 582 G~n~ 585 (1117)
-...
T Consensus 1204 d~~~ 1207 (1249)
T 3sfz_A 1204 NVAT 1207 (1249)
T ss_dssp CSSS
T ss_pred ECCC
Confidence 7544
No 207
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=51.54 E-value=20 Score=36.76 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=53.4
Q ss_pred HhcCCeEEEEecCCcCeeEeEEEeCCCCEEEEecCCCCcccccceeeecccccCChhHhhh----cCCCCCCceEEEEEc
Q 001236 21 LKKGAQLLKYGRKGKPKFYPFRLSNDETSLIWISSSGERSLKLASVSKIIPGQRTAVFQRY----LRPEKDYLSFSLIYN 96 (1117)
Q Consensus 21 L~~Gt~llK~~r~~kpk~r~f~Ls~d~~~l~W~s~~~~~~l~l~~I~eI~~G~~t~~f~r~----~~~~~~~~~FSIiy~ 96 (1117)
|+.|...+|..+ ++.+.+++.|-.|..-+.-.. ..+. .+.+. ++.+++..-. .....+...|-||..
T Consensus 72 l~eG~L~~k~~~-~~~~d~~~fLf~D~Ll~~~~~--~~ky-~~~~~-----~~~~pvi~L~~~~vre~a~d~~~~fli~~ 142 (185)
T 2lg1_A 72 VRDGSVFLKNAA-GRLKEVQAVLLTDILVFLQEK--DQKY-IFASL-----DQKSTVISLKKLIVREVAHEEKGLFLISM 142 (185)
T ss_dssp EEEEEEEEECTT-CCEEEEEEEEESSEEECCEEE--TTEE-ECCCC-----SSSCSEEESSSCEEECCSSCSSEEEEECC
T ss_pred eeeceEEEeccC-CCeeeEEEEeecCEEEEEEec--CCEE-EEEcc-----cCCCCeEeecceEEeccCCCCCeEEEEEe
Confidence 445555556544 456788888888744333221 1111 11110 1112211100 011124568888885
Q ss_pred C--CcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 97 N--GKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 97 ~--~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
. +.+.+.|.|.+.+|.+.|+..|+.-+
T Consensus 143 ~~~g~~~yel~a~s~~er~~W~~~I~~Ai 171 (185)
T 2lg1_A 143 GMTDPEMVEVHASSKEERNSWIQIIQDTI 171 (185)
T ss_dssp SSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 4 46889999999999999999988766
No 208
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=51.49 E-value=2e+02 Score=30.65 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=12.2
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|++++. +|+||++|-.
T Consensus 91 ~~~~~~~-~~~lyv~GG~ 107 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGGR 107 (315)
T ss_dssp SCEEEEE-TTEEEEECCE
T ss_pred ceeEEEE-CCEEEEEeCC
Confidence 4565554 8899999863
No 209
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=51.45 E-value=2.8e+02 Score=30.49 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=59.4
Q ss_pred CCEEEEEec--CceEEEEEcCCcEEEEeCC--CCCccCCCCCCceeccEEeccC------CCCCeEEEEec----CCeEE
Q 001236 283 LDVHHIACG--VRHAALVTRQGEVFTWGEE--SGGRLGHGVGKDIVQPHLLESL------TMTSVDFVTCG----EFHTC 348 (1117)
Q Consensus 283 ~~I~~Ia~G--~~Hs~~LT~dG~VyswG~N--~~GQLG~g~~~~~~~P~~V~~l------~~~~I~~Va~G----~~hs~ 348 (1117)
..|..|+.. ....+....||.|..|--. ..|++ ........+..+ ....+..+..- ....+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-----VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-----EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-----eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 356666664 3455666788999999542 11211 001111111111 23345555422 44556
Q ss_pred EEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC--eeEEEccCCcEEEEeCC
Q 001236 349 AVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW--HTALITSTGQLFTFGDG 417 (1117)
Q Consensus 349 aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~--HtlaLt~dG~Vy~wG~N 417 (1117)
..+.||.|+.|-... +. ....+..+.....|..++.... +.+.-+.+|.|..|-..
T Consensus 187 ~~~~d~~i~iwd~~~---~~----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 187 ALTNLSRVIIFDIRT---LE----------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp EEETTSEEEEEETTT---CC----------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEeCCCeEEEEeCCC---Ce----------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 667889999995431 10 1111222112335777776433 34445778889998643
No 210
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.93 E-value=42 Score=28.23 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+-|.+++..|..+...|+.+.+.++.|++-++.-+.|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556677777777777777777777777666554443
No 211
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=50.59 E-value=22 Score=39.78 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=31.5
Q ss_pred CceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 88 YLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 88 ~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
..+|.|+..+ .+++-|.|.+++|.+.|+..|+.+..+
T Consensus 314 ~~~F~i~~~~-~~~~~l~a~s~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 314 KHAFEIILKD-ENSVIFSAKSAEEKNNWMAALISLQYR 350 (354)
T ss_dssp CSEEEECCTT-SCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CccEEEecCC-CCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 5789988754 578999999999999999999988754
No 212
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.40 E-value=31 Score=45.32 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 001236 885 AKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 885 ake~ik~lt~qlk~~~~~~ 903 (1117)
.++-++.|..+|.++.+.+
T Consensus 925 Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 925 LEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444443
No 213
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.17 E-value=18 Score=29.56 Aligned_cols=32 Identities=6% Similarity=0.085 Sum_probs=19.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCE 855 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~ 855 (1117)
+.++.|+.-|+-|.+++..|++|++.|+.+.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666766666666666666666666665543
No 214
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.00 E-value=30 Score=31.36 Aligned_cols=35 Identities=29% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
.|-.|+..|+.|++.|+++......|+..+++|.+
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555543
No 215
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=49.88 E-value=2.5e+02 Score=29.52 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.1
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|++++. +|+||++|-.
T Consensus 94 ~~~~~~~-~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAA-EGKIYTSGGS 110 (306)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEECCC
Confidence 4555544 8999999864
No 216
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.28 E-value=1.3e+02 Score=27.73 Aligned_cols=66 Identities=23% Similarity=0.209 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
|.=|--|=..|.=||+.|+-+++-++..+-.++|+.+|-..- +..-|-.+..|+.++..+.+.|-.
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re-------~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE-------FEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777799999999999999999999888874221 445556667777777777666654
No 217
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=49.21 E-value=67 Score=33.65 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA 894 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~ 894 (1117)
-|.+++.+|++|+..|+.++....++++.++|+++.=..-+.. .+..+-++++|-.|.+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~-~a~e~~~~~LLpVlDn 121 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK-YRAQSLASDLLPVLDN 121 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHH
Confidence 5677888888888888888888888888766666543333322 2233455555544443
No 218
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=49.21 E-value=1.7e+02 Score=31.82 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=13.7
Q ss_pred CCeEEEEEcCCcEEEEcCC
Q 001236 344 EFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 344 ~~hs~aLT~dG~VysWG~n 362 (1117)
..|++++ .+|+||++|-.
T Consensus 110 ~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp SSEEEEE-ETTEEEEEECC
T ss_pred ccceEEE-ECCEEEEEeCc
Confidence 4566666 79999999853
No 219
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=48.89 E-value=96 Score=26.72 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMA 900 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~ 900 (1117)
+=+..+|+|-+.+.++... |+| .-++.|++|....|..-...-++||+-|..|..++..|-
T Consensus 9 ~il~eiRaQYE~ia~knr~-EaE-~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQ-EAE-EWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH-HHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888777532 222 246677777777777777777888888887777666553
No 220
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=48.30 E-value=1.6e+02 Score=27.65 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
.|..|+.+||..-+.|..++..+|+.-.-+.++...+.+-..+=-+|-..|-|-.--|..+|+|
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777666666666666666666666666677888888887777777764
No 221
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=47.59 E-value=3.3e+02 Score=30.19 Aligned_cols=239 Identities=8% Similarity=-0.034 Sum_probs=119.2
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCC-eEEEEEcCCcEEEEcCCC
Q 001236 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEF-HTCAVTMAGELYTWGDGT 363 (1117)
Q Consensus 285 I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~-hs~aLT~dG~VysWG~n~ 363 (1117)
+..++......+.-..||.|..|-...... ...+.. ....|..++.... ..+.-..||.|.+|-...
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~-----------~~~~~~-h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKF-----------LLQLSG-HDGGVWALKYAHGGILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEE-----------EEEECC-CSSCEEEEEECSTTEEEEEETTSCEEEEETTT
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcE-----------EEEEeC-CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCC
Confidence 344555666777778899999996433110 111111 1245777765433 555567899999995431
Q ss_pred CCCCccCCCCCcceeeeeeecCCCCCCcEEEEEec----CCeeEEEccCCcEEEEeCCCCCCcCCCCCC---C------c
Q 001236 364 HNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCG----PWHTALITSTGQLFTFGDGTFGVLGHGDRK---N------V 430 (1117)
Q Consensus 364 ~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G----~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~---~------~ 430 (1117)
+. ....+.. ....|..++.- ..+.+.-+.+|.|+.|-......+...... . .
T Consensus 193 ---~~----------~~~~~~~--h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 193 ---GC----------CTHVFEG--HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp ---TE----------EEEEECC--CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred ---Cc----------EEEEECC--CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 10 1111221 12345555432 244556678999999975543222110000 0 0
Q ss_pred ccceeeccc--ccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEE
Q 001236 431 SYPREVESL--SGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFH 508 (1117)
Q Consensus 431 ~~P~~V~~l--~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~ 508 (1117)
..+..+..+ ....|..++......+.- ..+|.|+.|-.... .+..........|.
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-----------~~d~~i~vwd~~~~------------~~~~~~~~~~~~v~ 314 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSG-----------SYDNTLIVWDVAQM------------KCLYILSGHTDRIY 314 (464)
T ss_dssp GCTTEEEEECCCSSCEEEEEEETTEEEEE-----------ETTSCEEEEETTTT------------EEEEEECCCSSCEE
T ss_pred CCeEEEEEccCccceEEEEcCCCCEEEEE-----------eCCCeEEEEECCCC------------cEEEEecCCCCCEE
Confidence 000011111 112344443322222222 46888888864321 11111111223455
Q ss_pred EEEec--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCC
Q 001236 509 KVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 509 ~Ia~G--~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~ 585 (1117)
.++.. ....+.-..+|.|+.|-... |+ ....+ ......|..+.....+.+.-..+|.|..|-...
T Consensus 315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~---------~~~~~--~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 315 STIYDHERKRCISASMDTTIRIWDLEN-GE---------LMYTL--QGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTT-TE---------EEEEE--CCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC-Cc---------EEEEE--eCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 55543 34566667788899986432 11 11111 122356777777777777778899999997654
No 222
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.44 E-value=24 Score=26.17 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
|+|.||...|+.|-.+-..++.|+.|+++-+.|
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 456778888888877777777777777766654
No 223
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=46.70 E-value=33 Score=32.87 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRC 854 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~ 854 (1117)
.+||.+||+||++++.+-
T Consensus 3 ~~e~~~l~~qi~~~ekr~ 20 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKN 20 (123)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 368888888888777653
No 224
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=46.67 E-value=4.1 Score=36.77 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQ------KSTKKAQEAMAVAAEESSKAKAAKDVIKSL 892 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~------~~~~~~~e~~~~a~~e~~~~kaake~ik~l 892 (1117)
...+..|...||.||..|+-+++.+-.|.+ |++|.+-| +|-..+|-+|.-|
T Consensus 38 ~~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~E---------SKL~~~kk~ie~l 94 (95)
T 3n7n_E 38 PKKVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQ---------SKLSSKDAFIDDL 94 (95)
T ss_dssp ------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhc
Confidence 345667888888888888888887776655 44444443 4555556666543
No 225
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=46.55 E-value=3e+02 Score=29.41 Aligned_cols=257 Identities=8% Similarity=-0.030 Sum_probs=117.5
Q ss_pred CCEEEEEecC---ceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEec----cCCCCCeEEEEe---cCCeEEEEEc
Q 001236 283 LDVHHIACGV---RHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLE----SLTMTSVDFVTC---GEFHTCAVTM 352 (1117)
Q Consensus 283 ~~I~~Ia~G~---~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~----~l~~~~I~~Va~---G~~hs~aLT~ 352 (1117)
..|..|+... ...+....+|.|..|-.........- .......+. ......|..++. +....+....
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY---TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE---EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE---eccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 4566777643 45555677999999975542221110 000000000 012345777776 4445666678
Q ss_pred CCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC-----eeEEEccCCcEEEEeCCCCCCcCCCCC
Q 001236 353 AGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW-----HTALITSTGQLFTFGDGTFGVLGHGDR 427 (1117)
Q Consensus 353 dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~-----HtlaLt~dG~Vy~wG~N~~GQLG~g~~ 427 (1117)
+|.|+.|-... ++ ....+. ....+..+..... ..++-+.+|.|+.|-......
T Consensus 121 d~~i~iwd~~~---~~----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------ 178 (408)
T 4a11_B 121 DKTLKVWDTNT---LQ----------TADVFN---FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------ 178 (408)
T ss_dssp TSEEEEEETTT---TE----------EEEEEE---CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------
T ss_pred CCeEEEeeCCC---Cc----------cceecc---CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------
Confidence 99999995441 10 001111 1123444444332 445557889999996432111
Q ss_pred CCcccceeecccccceEEEEeeCCceE-EEEEEeeecccccccCCceEEEecCCCCCCC-CC---CCCCCcccceeeccc
Q 001236 428 KNVSYPREVESLSGLRTIAVACGVWHT-AAVVEVIVTQSSASVSSGKLFTWGDGDKNRL-GH---GDKEPRLKPTCVPAL 502 (1117)
Q Consensus 428 ~~~~~P~~V~~l~~~kI~~VacG~~Ht-~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQL-G~---g~~~~~~~P~~V~~l 502 (1117)
...+.. ....|..++...... ++++ ...+|.|+.|-....... -. ........+......
T Consensus 179 -----~~~~~~-~~~~v~~~~~~~~~~~ll~~---------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (408)
T 4a11_B 179 -----SHILQG-HRQEILAVSWSPRYDYILAT---------ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243 (408)
T ss_dssp -----CEEECC-CCSCEEEEEECSSCTTEEEE---------EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCS
T ss_pred -----eeeecC-CCCcEEEEEECCCCCcEEEE---------EcCCCcEEEEECCCCCcccccccccccccceeecccccc
Confidence 111111 122455555443332 2221 146889999965432210 00 000000000001111
Q ss_pred CCCCEEEEEec--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEE
Q 001236 503 IDYNFHKVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYT 580 (1117)
Q Consensus 503 ~~~~I~~Ia~G--~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~ 580 (1117)
....|..++.. ..+.+....+|.|+.|-......+-..... ..........+..........++...+|.|+.
T Consensus 244 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 318 (408)
T 4a11_B 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK-----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV 318 (408)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC-----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred ccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc-----ccccccccceeEEecCCCceEEEEecCCEEEE
Confidence 22356666654 345666778999999976542221110000 00000011112222222344455567899999
Q ss_pred EeCC
Q 001236 581 WGKG 584 (1117)
Q Consensus 581 WG~n 584 (1117)
|-..
T Consensus 319 ~d~~ 322 (408)
T 4a11_B 319 YTVY 322 (408)
T ss_dssp EETT
T ss_pred EECc
Confidence 9754
No 226
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.55 E-value=14 Score=42.88 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=19.9
Q ss_pred ccceeEEE-eeh-hcc--C-hhhHH---HHHHHhHhHHHhhhccc
Q 001236 1056 TRDLKRVR-FSR-RRF--G-EHQAE---TWWSENREKVYERYNVR 1092 (1117)
Q Consensus 1056 ~~~~~rv~-fs~-~~f--~-~~~a~---~ww~~n~~~~~~~~~~~ 1092 (1117)
++.|-|+| |.. ++| . ..++. .=|-+...+|++...++
T Consensus 272 ~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 272 IRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp CSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 34455554 543 332 2 23455 33556777788877765
No 227
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=46.27 E-value=66 Score=38.29 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCCceEEEEEc--CCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 86 KDYLSFSLIYN--NGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 86 ~~~~~FSIiy~--~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
.+..+|-|++. .+.++.-|.|.+.+|.+.|+.-|+..|...
T Consensus 484 ~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~ 526 (536)
T 3odw_A 484 TDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 526 (536)
T ss_dssp TCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTS
T ss_pred ccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 45678888886 346789999999999999999999988554
No 228
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=46.13 E-value=3.4e+02 Score=30.01 Aligned_cols=243 Identities=9% Similarity=0.031 Sum_probs=120.6
Q ss_pred CEEEEEecCc-eEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec----CCeEEEEEcCCcEEE
Q 001236 284 DVHHIACGVR-HAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG----EFHTCAVTMAGELYT 358 (1117)
Q Consensus 284 ~I~~Ia~G~~-Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G----~~hs~aLT~dG~Vys 358 (1117)
.|..++.... ..+.-..||.|..|--..... ...+.. ....|..++.- ....+..+.||.|+.
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i~v 231 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKGCC-----------THVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 231 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTTEE-----------EEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE-----------EEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcEEE
Confidence 4666665433 555567899999996433110 111111 12345555442 245556678999999
Q ss_pred EcCCCCCCCccC---CCCCcc--eeeee----eec-CCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCCCCCcCCCCCC
Q 001236 359 WGDGTHNAGLLG---HGTDVS--HWIPK----RIS-GPLEGLQVASVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRK 428 (1117)
Q Consensus 359 WG~n~~~~GqLG---~g~~~~--~~~P~----~V~-~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~ 428 (1117)
|-.... ..+. ...... ...|. .+. .......|..++......+.-..+|.|+.|-......+
T Consensus 232 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------ 303 (464)
T 3v7d_B 232 WKLPKE--SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL------ 303 (464)
T ss_dssp EECCCC--CCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE------
T ss_pred eeCCCC--cccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------
Confidence 965521 1111 000000 00000 000 01123356777766677777788999999964321110
Q ss_pred CcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEE
Q 001236 429 NVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFH 508 (1117)
Q Consensus 429 ~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~ 508 (1117)
..+.. ....|..++.......+++ ...+|.|+.|-.... .+...-......|.
T Consensus 304 -----~~~~~-~~~~v~~~~~~~~~~~l~s---------g~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 304 -----YILSG-HTDRIYSTIYDHERKRCIS---------ASMDTTIRIWDLENG------------ELMYTLQGHTALVG 356 (464)
T ss_dssp -----EEECC-CSSCEEEEEEETTTTEEEE---------EETTSCEEEEETTTT------------EEEEEECCCSSCEE
T ss_pred -----EEecC-CCCCEEEEEEcCCCCEEEE---------EeCCCcEEEEECCCC------------cEEEEEeCCCCcEE
Confidence 11111 1123555544333222221 156888999864321 11111111234577
Q ss_pred EEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCcceeeecCCeEEEEeCCC
Q 001236 509 KVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 509 ~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~aLT~dG~Vy~WG~n~ 585 (1117)
.++....+.+....||.|..|-.....+ ..... ......+..+..... .++...+|.|+.|=...
T Consensus 357 ~~~~~~~~l~s~s~dg~v~vwd~~~~~~----------~~~~~-~~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 357 LLRLSDKFLVSAAADGSIRGWDANDYSR----------KFSYH-HTNLSAITTFYVSDN-ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp EEEECSSEEEEEETTSEEEEEETTTCCE----------EEEEE-CTTCCCEEEEEECSS-EEEEEETTEEEEEETTT
T ss_pred EEEEcCCEEEEEeCCCcEEEEECCCCce----------eeeec-CCCCccEEEEEeCCC-EEEEecCCeEEEEECCC
Confidence 7777778888888999999997653111 11111 111223444444443 34444589999996543
No 229
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=46.05 E-value=56 Score=35.70 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=32.4
Q ss_pred CceEEEEEcC---CcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 88 YLSFSLIYNN---GKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 88 ~~~FSIiy~~---~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
..+|.|.++. ..+++-|.|.+.+|.+.|+..|+.+|.+
T Consensus 269 ~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 269 PCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp TTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 5789999842 4578999999999999999999998854
No 230
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=45.92 E-value=69 Score=35.88 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=33.5
Q ss_pred CCCCceEEEEEcC--CcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 85 EKDYLSFSLIYNN--GKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 85 ~~~~~~FSIiy~~--~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
..+..+|-+++.. +.....|.|.+.+|.+.|+.-|+..+..
T Consensus 330 ~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~ 372 (377)
T 3p6a_A 330 ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS 372 (377)
T ss_dssp TTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence 3456788888863 4578899999999999999999988853
No 231
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.15 E-value=98 Score=26.85 Aligned_cols=13 Identities=8% Similarity=0.386 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 001236 887 DVIKSLTAQLKDM 899 (1117)
Q Consensus 887 e~ik~lt~qlk~~ 899 (1117)
-++..|.-.+.||
T Consensus 46 ~~~e~Ld~KI~eL 58 (72)
T 3cve_A 46 TLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHH
Confidence 3334444433333
No 232
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.45 E-value=25 Score=31.46 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
..+|++.+..|+.+..+.+.+|+.+..++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666665555555555555444
No 233
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=44.20 E-value=20 Score=29.58 Aligned_cols=53 Identities=25% Similarity=0.511 Sum_probs=35.7
Q ss_pred hcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhhc
Q 001236 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKVS 697 (1117)
Q Consensus 635 ~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~~ 697 (1117)
...|..|+.. .....|-.|...|+..|-. +++...|...+ .|..|..+..+.+
T Consensus 5 ~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~-----ppl~~~p~g~W-~C~~C~~~~~~~~ 57 (60)
T 2puy_A 5 EDFCSVCRKS----GQLLMCDTCSRVYHLDCLD-----PPLKTIPKGMW-ICPRCQDQMLKKE 57 (60)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECGGGSS-----SCCSSCCCSCC-CCHHHHHHHHHTT
T ss_pred CCCCcCCCCC----CcEEEcCCCCcCEECCcCC-----CCcCCCCCCce-EChhccChhhchh
Confidence 3467888752 3456788999999999843 34433444444 8999988776644
No 234
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.85 E-value=68 Score=46.29 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 846 QVESLRQRCEFQELELQKSTKKAQEAMAVA 875 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a 875 (1117)
||+.|+++.+.++.+|++.++++++.+...
T Consensus 1935 ~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888887777777665443
No 235
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.93 E-value=8.3 Score=42.87 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=43.9
Q ss_pred ecCCCcceeEEee-ecccchhhcccccccccccccccccccccCcceeccCCCCccccccccCC-----C-CCCCeecCh
Q 001236 615 ACGSNYSAAICLH-KWVSSAEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAP-----N-PGKPYRVCD 687 (1117)
Q Consensus 615 acG~~hT~aL~~~-kwvs~~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~-----~-~~kp~RVC~ 687 (1117)
.||+..++.+... +-..+.-.-.|+-|+..|.+ .|..|.+||.. ++.....+.. . +.-.+-+|+
T Consensus 187 vCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~-------~~l~y~~~e~~~~~~~~~~~r~e~C~ 257 (309)
T 2fiy_A 187 ACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES-------KHLAYLSLEHDGQPAEKAVLRAETCP 257 (309)
T ss_dssp TTCCCEEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC-------SCCEEECCCC-CCCSTTCSEEEEEET
T ss_pred CCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC-------CCeeEEEecCccccCCCcceEEEEcc
Confidence 5777777765431 11123334678899877666 46788888865 1222222221 1 233467999
Q ss_pred hhHhhhhhhcc
Q 001236 688 CCFAKLNKVSE 698 (1117)
Q Consensus 688 ~C~~~l~~~~~ 698 (1117)
.|+.-++.+.+
T Consensus 258 ~C~~YlK~~~~ 268 (309)
T 2fiy_A 258 SCQGYLKQFYL 268 (309)
T ss_dssp TTTEEEEEEET
T ss_pred cccchHhhhhh
Confidence 99998877643
No 236
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=42.67 E-value=3.3e+02 Score=28.73 Aligned_cols=241 Identities=12% Similarity=0.122 Sum_probs=115.4
Q ss_pred CEEEEEec--CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccC--CCCCeEEEEec----CCeEEEEEcCCc
Q 001236 284 DVHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESL--TMTSVDFVTCG----EFHTCAVTMAGE 355 (1117)
Q Consensus 284 ~I~~Ia~G--~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~Va~G----~~hs~aLT~dG~ 355 (1117)
.|..|+.. ....+.-..+|.|+.|-... . ....+..+ ....|..++.. ....+....||.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------E--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEET----------T--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCC----------C--cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 45556554 33344445688898885321 0 11112111 13457777764 456666678999
Q ss_pred EEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC----eeEEEccCCcEEEEeCCCCCCcCCCCCCCcc
Q 001236 356 LYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW----HTALITSTGQLFTFGDGTFGVLGHGDRKNVS 431 (1117)
Q Consensus 356 VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~----HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~ 431 (1117)
|++|-... + ...+.... ......|..|+.... ..+....+|.|+.|-.......
T Consensus 81 v~iwd~~~---~---------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--------- 138 (379)
T 3jrp_A 81 VLIWKEEN---G---------RWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT--------- 138 (379)
T ss_dssp EEEEEEET---T---------EEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---------
T ss_pred EEEEEcCC---C---------ceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---------
Confidence 99995431 0 11111111 112335777766543 4566678899999865432111
Q ss_pred cceeecccccceEEEEeeCC--------------ceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccce
Q 001236 432 YPREVESLSGLRTIAVACGV--------------WHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPT 497 (1117)
Q Consensus 432 ~P~~V~~l~~~kI~~VacG~--------------~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~ 497 (1117)
.+..+.. ....|..++... ...++. ...+|.|+.|-..... ....+.
T Consensus 139 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~dg~i~i~d~~~~~--------~~~~~~ 199 (379)
T 3jrp_A 139 SPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVT----------GGADNLVKIWKYNSDA--------QTYVLE 199 (379)
T ss_dssp CEEEEEC-CTTCEEEEEECCCC----------CTTCEEEE----------EETTSCEEEEEEETTT--------TEEEEE
T ss_pred eeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEE----------EeCCCeEEEEEecCCC--------cceeeE
Confidence 1111111 112344554433 222222 1468888888532110 000111
Q ss_pred eecccCCCCEEEEEec-----CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCc--ce
Q 001236 498 CVPALIDYNFHKVACG-----HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYH--VA 570 (1117)
Q Consensus 498 ~V~~l~~~~I~~Ia~G-----~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~H--t~ 570 (1117)
.........|..++.. ....+....+|.|+.|-...... ...............|..++..... .+
T Consensus 200 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-------CCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc-------cceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence 1111123356666654 34455566789999996543110 0000111111123456666654433 33
Q ss_pred eeecCCeEEEEeCC
Q 001236 571 VLTSRNEVYTWGKG 584 (1117)
Q Consensus 571 aLT~dG~Vy~WG~n 584 (1117)
+-..+|.|+.|=.+
T Consensus 273 ~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 273 LSGGDNKVTLWKEN 286 (379)
T ss_dssp EEESSSSEEEEEEE
T ss_pred EecCCCcEEEEeCC
Confidence 34578888888654
No 237
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.34 E-value=1.2e+02 Score=24.22 Aligned_cols=31 Identities=29% Similarity=0.239 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
-|.++|.-|+.+-..|+++.+--...|-|++
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 3455566666666666655555555554443
No 238
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.21 E-value=33 Score=28.82 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
-|-++|..|..+-..|..+.+.+..|++.++.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444443
No 239
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=41.76 E-value=3.9e+02 Score=29.39 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=38.8
Q ss_pred CEEEEEec--CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcC
Q 001236 284 DVHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 284 ~I~~Ia~G--~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~ 361 (1117)
.|..|+.. +.+.+.-+.||.|..|-...... ...+.. ....|..++......+.-..++.++.|-.
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-----------~~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----------LRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------EEEEeC-CCCceEEEeeCCCEEEEEeCCCceeEeee
Confidence 36666654 34555567889999996543111 111111 12456666666666666677888888854
Q ss_pred C
Q 001236 362 G 362 (1117)
Q Consensus 362 n 362 (1117)
.
T Consensus 217 ~ 217 (420)
T 4gga_A 217 R 217 (420)
T ss_dssp T
T ss_pred c
Confidence 3
No 240
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=41.12 E-value=3.3e+02 Score=28.40 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=12.6
Q ss_pred CCeEEEEEcCCcEEEEcCC
Q 001236 344 EFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 344 ~~hs~aLT~dG~VysWG~n 362 (1117)
..|++++. +|+||++|-.
T Consensus 104 ~~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred cceeEEEE-CCEEEEEccc
Confidence 35555554 8999999854
No 241
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=40.83 E-value=69 Score=35.79 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=32.9
Q ss_pred CCceEEEEEcC---CcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 87 DYLSFSLIYNN---GKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 87 ~~~~FSIiy~~---~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
+..+|.|++.+ +..++-|.|.|.+|.+.|+..|+.++..
T Consensus 278 ~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 278 DPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp CTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 35799999964 3578999999999999999999988843
No 242
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=40.77 E-value=82 Score=33.15 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=59.2
Q ss_pred EEEecCCcCeeEeEEEe-----CCCCEEEEe-cC------CC-CcccccceeeecccccCChhHhhhcCCCCCCceEEEE
Q 001236 28 LKYGRKGKPKFYPFRLS-----NDETSLIWI-SS------SG-ERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLI 94 (1117)
Q Consensus 28 lK~~r~~kpk~r~f~Ls-----~d~~~l~W~-s~------~~-~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIi 94 (1117)
.|++.+.|=|.|+..|- .|+..|.=+ ++ .+ +.++.|.++-.+..|... +.+...+.||
T Consensus 15 vk~r~~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~l---------dk~s~TlAII 85 (224)
T 3ml4_A 15 VKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPY---------EGLAHTLAII 85 (224)
T ss_dssp EEEC---CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEE---------TTEEEEEEEE
T ss_pred eeeecCCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccc---------cCcccEEEEE
Confidence 47766656677777764 245334333 22 12 345888999888888744 4567889999
Q ss_pred EcCCcceEEEEeCCHHHHHHHHHHHHHHHH
Q 001236 95 YNNGKRSLDLICKDKVEAEVWIAGLKALIS 124 (1117)
Q Consensus 95 y~~~~rtLDLva~~~~ea~~Wv~GL~~Li~ 124 (1117)
+.+ .++=|-|.+.+++..|..-|+..+.
T Consensus 86 c~d--~~~vLAFds~e~l~~W~~~l~~slG 113 (224)
T 3ml4_A 86 CLS--QAVMLGFDSHEAMCAWDTRIRYALG 113 (224)
T ss_dssp ESS--CEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred ecC--cEEEEEeCCHHHHHHHHHHHhhccC
Confidence 965 7889999999999999999988653
No 243
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=40.50 E-value=1e+02 Score=27.40 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=20.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
+.+.+.=++.=+--.+|-.+|+.+|+.+..+......+.++++
T Consensus 23 k~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 23 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333346667777666665444433333333333
No 244
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=40.46 E-value=1.1e+02 Score=34.61 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHhc-CCCCCCC
Q 001236 860 ELQKSTKKAQEAMAVAAEE--SSKAKAAKDVIKSLTAQLKDMAER-LPPGVYD 909 (1117)
Q Consensus 860 ~~~~~~~~~~e~~~~a~~e--~~~~kaake~ik~lt~qlk~~~~~-~~~~~~~ 909 (1117)
+++.....++++..|+.|| .+=..-|++-|+.|..+|.++-.+ ||.+.+|
T Consensus 72 ~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~~l~~~l~~le~~~ll~~~~D 124 (365)
T 1gqe_A 72 QMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYD 124 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHGGGGGCCSTTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 4455556677777787765 222356777788888888877654 6655543
No 245
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=40.13 E-value=4e+02 Score=29.01 Aligned_cols=225 Identities=9% Similarity=-0.008 Sum_probs=111.8
Q ss_pred EEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec-----CCeEEEEEcCCcEEEEcC
Q 001236 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG-----EFHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~VysWG~ 361 (1117)
.++.+..+.+++|+.|.+|.+-...--..|.. .........+....+..|..+... ..+.+++|++|.++..-.
T Consensus 53 ~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 53 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRA-SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EEECCCCEEEEEECCCeEEEEEHHHCCCCCcc-CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 45667788999999999999865432111110 000111122333345677777654 456889999999998754
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEe--cCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeeccc
Q 001236 362 GTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTC--GPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESL 439 (1117)
Q Consensus 362 n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~--G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l 439 (1117)
..+.... +.| .....+.++..++.+.. +..+.+++|++|.++.+-....-..|....- -+.+...
T Consensus 132 ~~~~~~r-~~G--------~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G----v~~i~L~ 198 (312)
T 1suu_A 132 TDFKAVK-SRG--------VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG----VCGMKLK 198 (312)
T ss_dssp GGGCC-----C--------EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC----EECCCCC
T ss_pred HHhhccC-CCc--------EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC----eEeEEeC
Confidence 4111000 111 11112223556665543 5667899999999999986654444432110 0011111
Q ss_pred ccceEEEEee--CCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEE--EecCc
Q 001236 440 SGLRTIAVAC--GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKV--ACGHS 515 (1117)
Q Consensus 440 ~~~kI~~Vac--G~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~I--a~G~~ 515 (1117)
.+..|+.+.. ...+.+++ +.+|.+...--.++-..+.+..-.... .+.......++.+ .....
T Consensus 199 ~~d~vv~~~~v~~~~~l~~v-----------t~~G~~kr~~~~e~~~~~R~~kGv~~~--~~~k~~~~~lv~~~~~~~~~ 265 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIV-----------SENGYGKRLNMSKISELKRGATGYTSY--KKSDKKAGSVVDAIAVSEDD 265 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEE-----------ETTSEEEEEEGGGSCBCCTTCCCEECS--CTTCTTTCSEEEEEEECTTC
T ss_pred CCCEEEEEEEECCCCeEEEE-----------ECCCceEEEEHHHhcccCCCCCCEEee--EccCCCCCeEEEEEEeCCCC
Confidence 2334554432 22333333 456666555544443333322211100 0000011233322 23566
Q ss_pred EEEEEecCCeEEEEeCCCCCCCC
Q 001236 516 LTVGLTTSGHVFTMGSTVYGQLG 538 (1117)
Q Consensus 516 htlaLT~dG~Vy~wGsN~~GQLG 538 (1117)
..+++|..|.+.-.-.+.....+
T Consensus 266 ~l~~~t~~g~~~r~~~~~i~~~~ 288 (312)
T 1suu_A 266 EILLVSKRSKALRTVAGKVSEQG 288 (312)
T ss_dssp EEEEEETTCEEEEEEGGGSCBCC
T ss_pred EEEEEeCCCeEEEEEcccCCccC
Confidence 77888888888776655544433
No 246
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=40.10 E-value=87 Score=40.69 Aligned_cols=10 Identities=40% Similarity=0.491 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 001236 836 LNQEVLKLRA 845 (1117)
Q Consensus 836 l~~ev~~l~~ 845 (1117)
+.+|+.+|+.
T Consensus 958 ~~~e~~~L~~ 967 (1080)
T 2dfs_A 958 YSTETEKLRS 967 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 247
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=39.80 E-value=1.1e+02 Score=30.28 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 846 QVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
+...|..+....+.|++++..++
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l 67 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDI 67 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33333333334444444444444
No 248
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=39.71 E-value=16 Score=42.50 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE----------AMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e----------~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
..+|..|-++-+.|..+.+.+..+.-+..|++.. .++-+++=.++-|+.++-++.+.++|.++.-+||
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445444444444444444444444444444332 1222222233334444444444445555555555
No 249
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=39.47 E-value=4.3e+02 Score=29.24 Aligned_cols=202 Identities=9% Similarity=0.073 Sum_probs=94.6
Q ss_pred eEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEe---cCCeEEEEEcCCcEEEEcCCCCCCCccC
Q 001236 294 HAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTC---GEFHTCAVTMAGELYTWGDGTHNAGLLG 370 (1117)
Q Consensus 294 Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~---G~~hs~aLT~dG~VysWG~n~~~~GqLG 370 (1117)
+.+.-..+|.|+.|--+..+..+ ....+..........|..|+. +....+....+|.|++|-.... ..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~--~~-- 266 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN--NT-- 266 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS--CS--
T ss_pred eEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC--CC--
Confidence 55556678999999766532211 111111111112345777776 3445556678999999965411 00
Q ss_pred CCCCcceeeeeeecCCCCCCcEEEEEecCC---eeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeecccccceEEEE
Q 001236 371 HGTDVSHWIPKRISGPLEGLQVASVTCGPW---HTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAV 447 (1117)
Q Consensus 371 ~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~---HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~V 447 (1117)
... -..+. .....|..|+.... ..+.-..+|.|..|-....++. ...+.. ....|..|
T Consensus 267 ---~~~---~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------~~~~~~-h~~~v~~i 327 (430)
T 2xyi_A 267 ---SKP---SHTVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------LHSFES-HKDEIFQV 327 (430)
T ss_dssp ---SSC---SEEEE--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------SEEEEC-CSSCEEEE
T ss_pred ---Ccc---eeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------eEEeec-CCCCEEEE
Confidence 000 00111 11234666665432 2334467899999976543221 011111 12245555
Q ss_pred eeCCce-EEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeeccc--CCCCEEEEEecCc---EEEEEe
Q 001236 448 ACGVWH-TAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL--IDYNFHKVACGHS---LTVGLT 521 (1117)
Q Consensus 448 acG~~H-t~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~Ia~G~~---htlaLT 521 (1117)
+..... .++++ ...+|.|..|-....+............|..+..+ ....|..++-... ..+...
T Consensus 328 ~~sp~~~~~l~s---------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 328 QWSPHNETILAS---------SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp EECSSCTTEEEE---------EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred EECCCCCCEEEE---------EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 554333 12221 14578888886543221100000000011222221 1234666665433 555667
Q ss_pred cCCeEEEEeCC
Q 001236 522 TSGHVFTMGST 532 (1117)
Q Consensus 522 ~dG~Vy~wGsN 532 (1117)
.+|.|..|-..
T Consensus 399 ~dg~i~iw~~~ 409 (430)
T 2xyi_A 399 EDNIMQVWQMA 409 (430)
T ss_dssp TTSEEEEEEEC
T ss_pred CCCCEEEeEcc
Confidence 78888888653
No 250
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=39.24 E-value=51 Score=37.77 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=27.7
Q ss_pred CceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHHHcc
Q 001236 88 YLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSG 126 (1117)
Q Consensus 88 ~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li~~~ 126 (1117)
..+|.| .+..+++-|.|.+++|.+.|+..|+..|...
T Consensus 303 ~~~f~i--~~~~~~~~l~a~s~~ek~~W~~~i~~ai~e~ 339 (434)
T 3mpx_A 303 PYALKI--ETSESCLMLSASSCAERDEWYGCLSRALPED 339 (434)
T ss_dssp CSEEEE--ECSSCEEEEECSSHHHHHHHHHHHHHC----
T ss_pred CeeEEE--ecCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 356665 3456789999999999999999999999654
No 251
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=39.09 E-value=60 Score=30.08 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
..+..+|+.++..|.++.+..+.++++...-++
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~ 44 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELTEAKKALD 44 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666655544333
No 252
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=38.35 E-value=68 Score=30.30 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=12.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 876 AEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 876 ~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
.++--||.-+||+.+.|..|-|+|
T Consensus 54 sdkId~CeCnkei~e~L~~~~k~~ 77 (129)
T 3f6n_A 54 TKLINDCPCNKEILEALGTQPKEQ 77 (129)
T ss_dssp HHHHHTCTTHHHHHHHHTC-----
T ss_pred HHHHhcCcchHHHHHHHccCCccc
Confidence 455566777777777665544443
No 253
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=38.10 E-value=3e+02 Score=27.19 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPP 905 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~ 905 (1117)
+|.+=+.+|.++++.-++=.++++.=++-.+..+.|+-.++.| +|.=-+=|+++..+|+...+.||.
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~lee----yK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEE----YKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4455555555555554444444444444444444444433333 333334477777788888888873
No 254
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=38.00 E-value=6.2e+02 Score=30.66 Aligned_cols=100 Identities=16% Similarity=0.229 Sum_probs=54.7
Q ss_pred eEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccC--CCCCeEEEEec----CCeEEEEEcCCcEEEEcCCCCCCC
Q 001236 294 HAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESL--TMTSVDFVTCG----EFHTCAVTMAGELYTWGDGTHNAG 367 (1117)
Q Consensus 294 Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~Va~G----~~hs~aLT~dG~VysWG~n~~~~G 367 (1117)
..+.-..+|.|..|-.... ....+..+ ....|..|+.. ....+....||.|++|-... +
T Consensus 23 ~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~---~ 87 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN---G 87 (753)
T ss_dssp CEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET---T
T ss_pred eEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC---C
Confidence 3444567899999953210 01111111 13467777764 44566667899999995431 0
Q ss_pred ccCCCCCcceeeeeeecCCCCCCcEEEEEecC----CeeEEEccCCcEEEEeCCC
Q 001236 368 LLGHGTDVSHWIPKRISGPLEGLQVASVTCGP----WHTALITSTGQLFTFGDGT 418 (1117)
Q Consensus 368 qLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~----~HtlaLt~dG~Vy~wG~N~ 418 (1117)
...+.... ......|..|+... ...+..+.+|.|+.|-...
T Consensus 88 ---------~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 88 ---------RWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp ---------EEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred ---------cccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 11111111 11234577776653 3556667889999997543
No 255
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=37.90 E-value=4.3e+02 Score=28.75 Aligned_cols=260 Identities=12% Similarity=0.061 Sum_probs=127.2
Q ss_pred ceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEE--EEecCCeEEEEEcCCcEEEEcCCCCCCCccC
Q 001236 293 RHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDF--VTCGEFHTCAVTMAGELYTWGDGTHNAGLLG 370 (1117)
Q Consensus 293 ~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~--Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG 370 (1117)
...+++|++|.|--.-...+.....+.. -...+..-.+..+.. ++.+..+.+++|..|.+|..--. ..-..|
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~--~ip~~~ 82 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY--EIKDSS 82 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG--GSCC--
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH--HCCCCC
Confidence 3467889999887664333322211100 001111112233333 45577889999999999987432 111111
Q ss_pred CCCCcceeeeeeecCCCCCCcEEEEEec-----CCeeEEEccCCcEEEEeCCCCCCc-CCCCCCCcccceeeccc-ccce
Q 001236 371 HGTDVSHWIPKRISGPLEGLQVASVTCG-----PWHTALITSTGQLFTFGDGTFGVL-GHGDRKNVSYPREVESL-SGLR 443 (1117)
Q Consensus 371 ~g~~~~~~~P~~V~~~l~~~~Iv~Va~G-----~~HtlaLt~dG~Vy~wG~N~~GQL-G~g~~~~~~~P~~V~~l-~~~k 443 (1117)
.... -......+. +.++.+|+.+... ..+.+++|++|.++..-...|-.. +.| .....+ .+..
T Consensus 83 r~~~-G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G--------~~~i~L~~~d~ 152 (312)
T 1suu_A 83 RASK-GQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRG--------VIVIKLNDKDF 152 (312)
T ss_dssp ------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----C--------EECBCCCTTCC
T ss_pred ccCC-CcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCc--------EEEEecCCCCE
Confidence 1100 001111222 3346778877664 346888999999998876544111 111 011111 2334
Q ss_pred EEEEee--CCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEe--cCcEEEE
Q 001236 444 TIAVAC--GVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVAC--GHSLTVG 519 (1117)
Q Consensus 444 I~~Vac--G~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~--G~~htla 519 (1117)
++.+.. +..+.+++ |.+|.++.+-..+.-..|.+..-. ..+....+..|+.+.. ...+.++
T Consensus 153 lv~~~~~~~~~~i~l~-----------T~~G~~~r~~~~ev~~~gR~~~Gv----~~i~L~~~d~vv~~~~v~~~~~l~~ 217 (312)
T 1suu_A 153 VTSAEIVFKDEKVICL-----------SKKGSAFIFNSRDVRLTNRGTQGV----CGMKLKEGDLFVKVLSVKENPYLLI 217 (312)
T ss_dssp EEEEEEECTTCEEEEE-----------ETTSEEEEEEGGGSCBCCTTBCCE----ECCCCCTTCCEEEEEECTTCSEEEE
T ss_pred EEEEEEeCCCCEEEEE-----------eCCCcEEEEEHHHccccCCCCCCe----EeEEeCCCCEEEEEEEECCCCeEEE
Confidence 444332 34444444 678888887665543333321111 0111112344555433 3456888
Q ss_pred EecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEE--EeCCCcceeeecCCeEEEEeCCC
Q 001236 520 LTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEI--ACGAYHVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 520 LT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~I--s~G~~Ht~aLT~dG~Vy~WG~n~ 585 (1117)
+|++|.+..+-..++-..+.+..-........ .....++.+ .......+++|+.|.+.-.-...
T Consensus 218 vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k--~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 218 VSENGYGKRLNMSKISELKRGATGYTSYKKSD--KKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EETTSEEEEEEGGGSCBCCTTCCCEECSCTTC--TTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EECCCceEEEEHHHhcccCCCCCCEEeeEccC--CCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 89999988887777655554322111111110 011233332 23556677888888776654443
No 256
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.85 E-value=1.2e+02 Score=35.32 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVE 848 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~ 848 (1117)
+.|-|-+..+-+..++..|+..|+
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~ 110 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVA 110 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHH
Confidence 344454554444444444444333
No 257
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.72 E-value=72 Score=31.11 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
-++-|.+++..+..++.+|+++......+++...+++++
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444445555444444444444444433
No 258
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=37.67 E-value=52 Score=30.66 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
.++.+|+++++.|.++-+.++..|+.+++++++..
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999998888888888888888743
No 259
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.56 E-value=1.8e+02 Score=27.84 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=3.3
Q ss_pred HHHHHHhc
Q 001236 895 QLKDMAER 902 (1117)
Q Consensus 895 qlk~~~~~ 902 (1117)
+|++|.++
T Consensus 84 ~l~el~~r 91 (129)
T 2fxo_A 84 KVKEMNKR 91 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 260
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.54 E-value=1.2e+02 Score=26.20 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
|.+|+..++...++..+++..|+.+.++++|= -+.|+-|..||...
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek--------------d~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQK--------------DELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHh
Confidence 66777777777777888888888888888771 12366677777554
No 261
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.46 E-value=16 Score=30.59 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKS 864 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~ 864 (1117)
-++|..|.++...|..+...+..|+..+
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 262
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=37.30 E-value=53 Score=37.07 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=28.1
Q ss_pred eEEEEEc-CCcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 90 SFSLIYN-NGKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 90 ~FSIiy~-~~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
+|-|... .+.+++-|.|++.+|.+.|+..|+..+..
T Consensus 334 ~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~ 370 (385)
T 1txd_A 334 LFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAAS 370 (385)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 4444433 34688999999999999999999988843
No 263
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=37.07 E-value=3.9e+02 Score=28.04 Aligned_cols=168 Identities=20% Similarity=0.157 Sum_probs=76.0
Q ss_pred CCCCCeEEEEec-CCeEEEEEcCCc-EEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCC
Q 001236 332 LTMTSVDFVTCG-EFHTCAVTMAGE-LYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTG 409 (1117)
Q Consensus 332 l~~~~I~~Va~G-~~hs~aLT~dG~-VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG 409 (1117)
+.+.++.-..++ ....++++.+|+ |+.|+... + + ......|..+.....+ .+.-...+.....+++.+|
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~---~-~----~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFET---G-I----ERPHAQFRQINKNKKG-NYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECC---S-C----SSGGGSCSCCEECTTS-CEEEEETTTTEEEEECTTS
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccC---C-C----CcccccccCceECCCC-CEEEEecCCCEEEEECCCC
Confidence 345566655666 555666778887 45554320 0 0 0011112222212223 3433333445566677677
Q ss_pred c-EEEEeCCCCCCcCCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCc-eEEEecCCCCCCCCC
Q 001236 410 Q-LFTFGDGTFGVLGHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSG-KLFTWGDGDKNRLGH 487 (1117)
Q Consensus 410 ~-Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G-~Ly~WG~n~~GQLG~ 487 (1117)
+ +|.++... .|.-+..+.+-.+. |++...+.+...+ ..+| .+|.++.+...
T Consensus 156 ~~~w~~~~~~-------------~~~~~~~~~~g~~~-v~~~~~~~v~~~d---------~~tG~~~w~~~~~~~~---- 208 (276)
T 3no2_A 156 QLLNSVKLSG-------------TPFSSAFLDNGDCL-VACGDAHCFVQLN---------LESNRIVRRVNANDIE---- 208 (276)
T ss_dssp CEEEEEECSS-------------CCCEEEECTTSCEE-EECBTTSEEEEEC---------TTTCCEEEEEEGGGSB----
T ss_pred CEEEEEECCC-------------CccceeEcCCCCEE-EEeCCCCeEEEEe---------CcCCcEEEEecCCCCC----
Confidence 5 46665421 12222223222333 4444455444432 2324 46777643211
Q ss_pred CCCCCcccceeecccCCCCEEEEEe--c---------CcEEEEEecCCeEEEEeCCCCCCCCC
Q 001236 488 GDKEPRLKPTCVPALIDYNFHKVAC--G---------HSLTVGLTTSGHVFTMGSTVYGQLGN 539 (1117)
Q Consensus 488 g~~~~~~~P~~V~~l~~~~I~~Ia~--G---------~~htlaLT~dG~Vy~wGsN~~GQLG~ 539 (1117)
......|.-+..+.+-++. |+. | ....+.++.+|+| .|-.+....+|.
T Consensus 209 --~~~l~~~~~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 209 --GVQLFFVAQLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp --SCCCSEEEEEEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred --CccccccccceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 0011234444434444443 333 3 2357778888876 555555555554
No 264
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=36.82 E-value=2.4e+02 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 857 QELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 857 ~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
-+.+|..+.++++++.. .|.+..-| |+.|.+.+.++-.||
T Consensus 54 ye~~i~~Lr~~i~~~~~------ek~~l~~e-~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTN------DKARVEVE-RDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHhhC
Confidence 45677777777776432 23333333 556777777777665
No 265
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=36.70 E-value=2e+02 Score=28.41 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 841 LKLRAQVESLRQRCEFQELELQKSTKKAQE------------AM----AVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 841 ~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e------------~~----~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
.+|++++..|.++|++++.+.+|.-++++. .+ .-...|-++. .|-++-|..||+.+ ++||
T Consensus 32 ~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r---~e~k~~l~~ql~qv-~~L~ 107 (150)
T 4dci_A 32 REISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSEL---EEQKRNLLQQQAQV-RELE 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-hcCC
Confidence 567888888999999999888876554443 11 1222333333 34566777788775 6789
Q ss_pred CCC
Q 001236 905 PGV 907 (1117)
Q Consensus 905 ~~~ 907 (1117)
-|.
T Consensus 108 lGs 110 (150)
T 4dci_A 108 MDQ 110 (150)
T ss_dssp TTC
T ss_pred CcC
Confidence 885
No 266
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=36.65 E-value=2.6e+02 Score=29.77 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.2
Q ss_pred CeeEEEccCCcEEEEeC
Q 001236 400 WHTALITSTGQLFTFGD 416 (1117)
Q Consensus 400 ~HtlaLt~dG~Vy~wG~ 416 (1117)
.|++++ -+|+||.+|-
T Consensus 151 ~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp SCEEEE-ETTEEEEECC
T ss_pred ccEEEE-ECCEEEEEcC
Confidence 466665 6889999994
No 267
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=36.47 E-value=4.8e+02 Score=28.87 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=15.6
Q ss_pred CcEEEEEecCC--eeE-EEccCCcEEEEeC
Q 001236 390 LQVASVTCGPW--HTA-LITSTGQLFTFGD 416 (1117)
Q Consensus 390 ~~Iv~Va~G~~--Htl-aLt~dG~Vy~wG~ 416 (1117)
..|..|+.... +.+ .-..||.|..|-.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEec
Confidence 35777765322 233 3356888888853
No 268
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.22 E-value=71 Score=35.59 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQ-------VESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~q-------v~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
.+.-|.+|+.+|... ++.|+.+.+.++.+|+++++++
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555443 3444444444444444444443
No 269
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=36.18 E-value=77 Score=28.51 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=3.7
Q ss_pred HHHHHHhcCCCC
Q 001236 895 QLKDMAERLPPG 906 (1117)
Q Consensus 895 qlk~~~~~~~~~ 906 (1117)
+|+.|--.+|.+
T Consensus 68 ~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 68 TLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHCcHH
Confidence 344444445543
No 270
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.12 E-value=69 Score=46.21 Aligned_cols=14 Identities=21% Similarity=0.748 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHccC
Q 001236 114 VWIAGLKALISSGQ 127 (1117)
Q Consensus 114 ~Wv~GL~~Li~~~~ 127 (1117)
.|+..|+.+|..+.
T Consensus 999 ~WIEnlNsVLDDNK 1012 (3245)
T 3vkg_A 999 EWVENLNSLLDDNK 1012 (3245)
T ss_dssp HHHTTTHHHHSSSC
T ss_pred HHHHHHHHHhcCCC
Confidence 69999988885543
No 271
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.94 E-value=2.9e+02 Score=26.23 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
|+=...-+.|..||..|+.+++.|+.+++..-.+|+.--.+++--..-.+-+.-+...-.| -|-.++.++
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e---~Lr~e~~~l 80 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCE---FLRAELDEL 80 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3444566789999999999999998888777777665444444433334433333333333 444455544
No 272
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.88 E-value=99 Score=25.84 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
.+..|+.+|+.|+.+-..+..+|+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 273
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.81 E-value=81 Score=29.17 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAM 872 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~ 872 (1117)
.....+.|...+..+...++.|..+.+..+.++.++++++.+..
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677778888888888888888888888888888887754
No 274
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=35.69 E-value=69 Score=32.42 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHhcC
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA--QLKDMAERL 903 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~--qlk~~~~~~ 903 (1117)
+.|.+-..+|+.+++.|.++...++.+-.+++++++.|..--..+++| -.||++|+.=.. +|-.+.-+|
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~ak-i~Ak~lvr~rk~~~~l~~~~a~l 80 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCI-VLAKEMIRSRKAVSKLYASKAHM 80 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766666666666666666654422222222 245666543322 344444444
No 275
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=35.59 E-value=47 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEF 856 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~ 856 (1117)
+++.|....++|..|+.|...|++|...
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4566777778888888887777777544
No 276
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=35.37 E-value=4.6e+02 Score=28.40 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCEEEEEe---cCceEEEEEcCCcEEEEeCCCCCccCCCCCCceecc-EEeccCCCCCeEEEEecC---CeEEEEEcCCc
Q 001236 283 LDVHHIAC---GVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQP-HLLESLTMTSVDFVTCGE---FHTCAVTMAGE 355 (1117)
Q Consensus 283 ~~I~~Ia~---G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P-~~V~~l~~~~I~~Va~G~---~hs~aLT~dG~ 355 (1117)
..|..|+. +....+.-..||.|..|-....+.... ...+ ..+.. ....|..|+... ...+.-..||.
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-----~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-----LREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-----BCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-----cCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 35667776 445556667899999997654322110 0011 11111 134577776643 34555578999
Q ss_pred EEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC--CeeEEEccCCcEEEEeC
Q 001236 356 LYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP--WHTALITSTGQLFTFGD 416 (1117)
Q Consensus 356 VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~--~HtlaLt~dG~Vy~wG~ 416 (1117)
|++|-... +. ....+........|..|+... ...+....+|.|+.|-.
T Consensus 156 i~iwd~~~---~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 156 ILVWDVGT---GA----------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EEEEETTT---TE----------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EEEEECCC---CC----------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 99995431 10 111120011233566666543 34445567889999864
No 277
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.24 E-value=35 Score=23.16 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLR 851 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~ 851 (1117)
.-||..|.-|.||+.-|.-++..|+
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 3477888888888887777666654
No 278
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.22 E-value=93 Score=28.29 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
..+..+|+.++..|.++.+..+.++++...-++
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~ 39 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALE 39 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777776666666666665554444
No 279
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.14 E-value=1.5e+02 Score=24.11 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
-|+..|.+|+++|..|+...+.--.|-.|.-++|
T Consensus 15 ~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 15 TANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555555555555554444444444444443
No 280
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=34.97 E-value=47 Score=35.94 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=35.5
Q ss_pred CCCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 84 PEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 84 ~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
..++.++|-|.--++..++=|-|+|.+|+..|+..|.+=|
T Consensus 222 ~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i 261 (263)
T 1z87_A 222 TDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 261 (263)
T ss_dssp SCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHh
Confidence 3557899999999899999999999999999999987654
No 281
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=34.96 E-value=1.4e+02 Score=26.20 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCC
Q 001236 842 KLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 842 ~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~~~ 906 (1117)
.|.+.+..|+.|.-.||.-|+.+.+.+-+-+. .|..|+.||+.|.+||..-
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~--------------~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARL--------------TGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 34456666777777777777666555443222 2777888888888888753
No 282
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=34.64 E-value=47 Score=33.87 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=35.6
Q ss_pred CCCCCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 84 PEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 84 ~~~~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
.+++.++|=|.--++..|+=|-|+|..++..|+..|.+=|
T Consensus 137 tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni 176 (178)
T 2adz_A 137 TDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 176 (178)
T ss_dssp SCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999987644
No 283
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=34.13 E-value=5.7e+02 Score=29.10 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=34.4
Q ss_pred cCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEc
Q 001236 291 GVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWG 360 (1117)
Q Consensus 291 G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG 360 (1117)
...+.+....+|.|+.|-... ..+..........|..++. .. .+....||.|+.|-
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWS 363 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETT
T ss_pred CCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEE
Confidence 556666777888888885432 1111111112346777777 66 56667899999994
No 284
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.90 E-value=36 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
+.|..|..+|..|+...+....|.+.+..++.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444444444444443
No 285
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=33.87 E-value=1.2e+02 Score=26.60 Aligned_cols=45 Identities=29% Similarity=0.307 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+.|++|.+-|+.==.+|..=|+.|+++....+..|+.+++|.+|
T Consensus 27 l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 27 LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777666777777777777777777777777777766
No 286
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.63 E-value=68 Score=36.84 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
-|.+++++|+.+++.|+++....+.+-.++..+++
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333333333333
No 287
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.42 E-value=85 Score=29.94 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~ 874 (1117)
+++.+-+.|..-+..|..+++.|+++.+....++.....++++.+.-
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555567777777777777777777777777777777777666543
No 288
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.27 E-value=94 Score=27.66 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+.+..|+.+|..|+=+.|.+.-+|+.++++-++
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555554444
No 289
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=33.14 E-value=3e+02 Score=25.53 Aligned_cols=53 Identities=9% Similarity=0.177 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHh
Q 001236 849 SLRQRCEFQELELQKSTKKAQEAMAVAAEESSK----------AKAAKDVIKSLTAQLKDMAE 901 (1117)
Q Consensus 849 ~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~----------~kaake~ik~lt~qlk~~~~ 901 (1117)
.++++.+..-.++.+..++++..+.-...+.++ .+.-+-...+|..+|+++..
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776666666555443333221 14456667777777777653
No 290
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.01 E-value=88 Score=30.36 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 853 RCEFQELELQK-STKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 853 ~~~~~~~~~~~-~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
+....+.||+. +..=++||-.|++++..++-++++=.+.|..||++--..|
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566663 3344578999999987777777777777888877765444
No 291
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=32.78 E-value=4.4e+02 Score=27.41 Aligned_cols=109 Identities=10% Similarity=0.065 Sum_probs=60.5
Q ss_pred CCCEEEEEecCc-----eEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec--CCeEEEEEcCC
Q 001236 282 VLDVHHIACGVR-----HAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG--EFHTCAVTMAG 354 (1117)
Q Consensus 282 ~~~I~~Ia~G~~-----Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG 354 (1117)
...|..|+.... ..+.-..+|.|+.|-....++ .....+.. ....|..++.. ..+.+....||
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 346788887754 445556789999996544221 11111211 13457666654 33555667899
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEe--cCC--eeEEEccCCcEEEEeC
Q 001236 355 ELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTC--GPW--HTALITSTGQLFTFGD 416 (1117)
Q Consensus 355 ~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~--G~~--HtlaLt~dG~Vy~wG~ 416 (1117)
.|.+|-... ++ ...+.. ....|..|+. ... +.+....+|.|+.|-.
T Consensus 109 ~v~iwd~~~---~~-----------~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 109 TAKMWDLSS---NQ-----------AIQIAQ--HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEEETTT---TE-----------EEEEEE--CSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred cEEEEEcCC---CC-----------ceeecc--ccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 999995541 11 111111 2335666765 333 3444467899999964
No 292
>1g73_A SMAC/diablo, second mitochondria-derived activator of caspases; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: a.7.4.1
Probab=32.47 E-value=2.1e+02 Score=28.38 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQ---KSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~---~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
+|.+=|.|..-|.|+.+++++|...|--.+ ++-+-.-||.-+++-|.+ |-+|.+-|..--.|..+
T Consensus 74 eD~~WqvIi~~R~E~~d~k~e~~rles~w~~a~~l~e~aAEaAy~sGAd~a-svta~~~iq~AqsqV~~ 141 (162)
T 1g73_A 74 EDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQA-SITARNHIQLVKLQVEE 141 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHHHHHHH
Confidence 566678899999999999999999885544 666677788888888877 66777777666554443
No 293
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=32.41 E-value=1.7e+02 Score=28.35 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=47.9
Q ss_pred CcCeeEeEEEeC-CCC-EEEE-ecC----CCCcccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCCcceEEEEe
Q 001236 34 GKPKFYPFRLSN-DET-SLIW-ISS----SGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLIC 106 (1117)
Q Consensus 34 ~kpk~r~f~Ls~-d~~-~l~W-~s~----~~~~~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~~rtLDLva 106 (1117)
.|.|-|+.-... .+. .+.+ +.+ +.+-.|+++.|.|||.=..=+ -...+.-|-|=-.+ .--.=|.|
T Consensus 41 ~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LE-------mPD~~nTFVlK~~n-~~eyi~ea 112 (136)
T 1v5m_A 41 QWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLE-------MPEKDNTFVLKVEN-GAEYILET 112 (136)
T ss_dssp CCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSS-------SCCCTTEECCBCTT-SCBEEEEC
T ss_pred chhheeeEEEEccCCCceEEEEecCCcccCCccccchhhhhhhhhccccc-------cCCccceEEEEecC-CcEEEEEc
Confidence 455556544443 233 4444 443 334568999999998743321 01123344332222 12345788
Q ss_pred CCHHHHHHHHHHHHHHHHc
Q 001236 107 KDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 107 ~~~~ea~~Wv~GL~~Li~~ 125 (1117)
.|+.+++-|+.-|+.=+..
T Consensus 113 ~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 113 IDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCC
Confidence 9999999999999876643
No 294
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=32.22 E-value=45 Score=29.41 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
|+..+.-|.+|+.+|+.|++.|+++
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444433
No 295
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.20 E-value=1.5e+02 Score=30.48 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=24.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+++.=+++=+--.+|-.+|+.+|+.|..+...+..|+++++.-+++
T Consensus 101 ~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 101 EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333335677777777666555544444444444444443
No 296
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=32.15 E-value=3e+02 Score=28.64 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
..+-+.+++.+....++.+.+..+.....++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (213)
T 3g67_A 40 ISENIMEELKKSGTNVDQIVERVKEASSQIG 70 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433333
No 297
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.11 E-value=5.2e+02 Score=27.99 Aligned_cols=215 Identities=10% Similarity=0.030 Sum_probs=106.5
Q ss_pred EEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeee--eeecCCCCCCcEEEEEe-----cCCeeEEEccCCcEE
Q 001236 340 VTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIP--KRISGPLEGLQVASVTC-----GPWHTALITSTGQLF 412 (1117)
Q Consensus 340 Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P--~~V~~~l~~~~Iv~Va~-----G~~HtlaLt~dG~Vy 412 (1117)
++.+..+.+++|..|++|..-.. ..-..|. ...-.| ..+. +.++.+|+.+.. ...+.+++|++|.+.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~--elp~~~~---~a~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~K 122 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVY--QLPEATR---GARGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATANGTVK 122 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGG--GSCCCCS---SSCCEEGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhh--HCcCCCC---CCCCeEhhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeCCCeEE
Confidence 45677889999999999988543 1111111 111122 1222 335677887755 233578889999888
Q ss_pred EEeCCCCCCcCCCCCCCccccee-ecccccceEEEE--eeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCC
Q 001236 413 TFGDGTFGVLGHGDRKNVSYPRE-VESLSGLRTIAV--ACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGD 489 (1117)
Q Consensus 413 ~wG~N~~GQLG~g~~~~~~~P~~-V~~l~~~kI~~V--acG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~ 489 (1117)
-.-...|-.... .... +..-.+..++.+ ..+..+.+++ |++|.++-+-..+--.+|...
T Consensus 123 rt~l~e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~-----------T~~G~~irf~~~~v~~~gr~a 184 (307)
T 1zi0_A 123 KTVLTEFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLF-----------SAEGKVVRFKESSVRAMGCNT 184 (307)
T ss_dssp EEEGGGGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEE-----------ETTSEEEEEEGGGSCBCCTTC
T ss_pred EEEHHHhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEE-----------CCCCcEEEEEHHHcCccCCCC
Confidence 775443321110 0001 111112233332 2344444444 679999888665543343321
Q ss_pred CCCcccceeecccCCCCEEEEEec--CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEe--C
Q 001236 490 KEPRLKPTCVPALIDYNFHKVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIAC--G 565 (1117)
Q Consensus 490 ~~~~~~P~~V~~l~~~~I~~Ia~G--~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~--G 565 (1117)
... ..+....+..|+.+..- ....+++|++|.+--+-..+|-.-+.+......+.... ....++.+.. +
T Consensus 185 ~Gv----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~---~~~~lv~~~~v~~ 257 (307)
T 1zi0_A 185 TGV----RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE---RNGLVVGAVQVDD 257 (307)
T ss_dssp CCE----ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCT---TTCSEEEEEEECT
T ss_pred CCe----EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecC---CCCeEEEEEEeCC
Confidence 111 11222234556665432 34567778888755554433322222111111111111 1134444433 5
Q ss_pred CCcceeeecCCeEEEEeCCC
Q 001236 566 AYHVAVLTSRNEVYTWGKGA 585 (1117)
Q Consensus 566 ~~Ht~aLT~dG~Vy~WG~n~ 585 (1117)
....+++|++|.+.-+--+.
T Consensus 258 ~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 258 CDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCEEEEEESSCCEEEEEGGG
T ss_pred CceEEEEcCCCcEEEEeccc
Confidence 56678899999888765444
No 298
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=32.07 E-value=2.2e+02 Score=28.86 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQ---KSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~---~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
+|.+-|.|..-|.++.+++++|...|--.+ ++.+-.-||.-+++-|.+ |-+|.+-|..--.|.++
T Consensus 74 eD~vWqvIi~~R~E~~~kk~e~~rlEs~w~~a~~L~e~aAEaAy~sGAd~a-svta~~~iq~aqsqV~~ 141 (184)
T 1few_A 74 EDEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQA-SITARNHIQLVKLQVEE 141 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHHHHHHH
Confidence 566678899999999999999998885443 555566666666666666 55566555555554443
No 299
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=32.06 E-value=2.2e+02 Score=30.29 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=12.2
Q ss_pred CeEEEEEcCCcEEEEcC
Q 001236 345 FHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~ 361 (1117)
.+..++..+++||++|-
T Consensus 48 ~~~~~~~~~~~lyv~GG 64 (318)
T 2woz_A 48 NHSSIVTQQNQVYVVGG 64 (318)
T ss_dssp SEEEEECSSSCEEEEES
T ss_pred cceEEEEECCEEEEECC
Confidence 34445557899999986
No 300
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=31.98 E-value=4.9e+02 Score=27.70 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=56.4
Q ss_pred CCEEEEEec------Cce-EEEEEcCCcEEEEeCCC------CCccCCCCCCceeccE-Eec------cCCCCCeEEEEe
Q 001236 283 LDVHHIACG------VRH-AALVTRQGEVFTWGEES------GGRLGHGVGKDIVQPH-LLE------SLTMTSVDFVTC 342 (1117)
Q Consensus 283 ~~I~~Ia~G------~~H-s~~LT~dG~VyswG~N~------~GQLG~g~~~~~~~P~-~V~------~l~~~~I~~Va~ 342 (1117)
..|..++.. ..+ .+....+|.|+.|-... ...+. ..|. .+. ......|..++.
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN-------WSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee-------ccCcceeeeeeccccCCCCCceEEEE
Confidence 346566555 445 55667889999996443 11111 1111 111 112344556655
Q ss_pred cCC-eEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCC-CC---CCcEEEEEecC--CeeEEEccC---CcEE
Q 001236 343 GEF-HTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGP-LE---GLQVASVTCGP--WHTALITST---GQLF 412 (1117)
Q Consensus 343 G~~-hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~-l~---~~~Iv~Va~G~--~HtlaLt~d---G~Vy 412 (1117)
... ..++-..+|.|+.|-... + .....+... .. ...|..|+... .+.++...+ |.|+
T Consensus 195 ~~~~~l~~~~~dg~i~i~d~~~---~----------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 195 SERGLIATGFNNGTVQISELST---L----------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CTTSEEEEECTTSEEEEEETTT---T----------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred CCCceEEEEeCCCcEEEEECCC---C----------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence 433 444445689999995431 0 011111110 01 33566666533 344445666 8888
Q ss_pred EEeCC
Q 001236 413 TFGDG 417 (1117)
Q Consensus 413 ~wG~N 417 (1117)
.|-..
T Consensus 262 i~d~~ 266 (397)
T 1sq9_A 262 LYETE 266 (397)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 88644
No 301
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.97 E-value=1.6e+02 Score=34.34 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 846 QVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 846 qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
|-=.+++-.+..|.|+++.++++.+|-...++-.+|-..+.-||.++...|.+
T Consensus 308 qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~ 360 (551)
T 2b5u_A 308 QEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDA 360 (551)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 33344455588888899999999999888888888767777888776666544
No 302
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=31.82 E-value=1.5e+02 Score=32.83 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTK----------KAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~----------~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
..++.++++|++..+.+.+..+.++++.++ ++++|-.-...-.+..++++.-|+.+.++|+.....|-
T Consensus 76 ~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 76 KAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555555555433 22232222222223345566667777777777666553
No 303
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=31.81 E-value=5.6e+02 Score=28.28 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCEEEEEec---CcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCCccee--eecCCeEE
Q 001236 505 YNFHKVACG---HSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAYHVAV--LTSRNEVY 579 (1117)
Q Consensus 505 ~~I~~Ia~G---~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~Ht~a--LT~dG~Vy 579 (1117)
..|..|+.. ....+.-..||.|..|-......... ..........|..|+...+...+ -..||.|+
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~---------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~ 321 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS---------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIR 321 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC---------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEE
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccce---------EEEeeeccccccceeECCCCCeeEEEcCCCEEE
Confidence 356666643 22333345678888885432111110 00000112345555544333333 34789999
Q ss_pred EEeCC
Q 001236 580 TWGKG 584 (1117)
Q Consensus 580 ~WG~n 584 (1117)
.|-..
T Consensus 322 iwd~~ 326 (435)
T 4e54_B 322 VYSAS 326 (435)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99643
No 304
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.81 E-value=1.3e+02 Score=26.56 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 001236 889 IKSLTAQLKDM 899 (1117)
Q Consensus 889 ik~lt~qlk~~ 899 (1117)
+..|.-.+.||
T Consensus 54 ~e~Ld~KI~eL 64 (79)
T 3cvf_A 54 AQLLDVSLFEL 64 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 33333333333
No 305
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=31.76 E-value=2.3e+02 Score=29.51 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 840 VLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 840 v~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+..|+.++..|+++.+.++.++.++.+++++
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 306
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=31.67 E-value=76 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
+||+++-+|++.|-.|--..|.|+-+.+|-+
T Consensus 76 kEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 76 KEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5777777777777777777777777766544
No 307
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.65 E-value=1.1e+02 Score=25.21 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKS 864 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~ 864 (1117)
-++|..|.++...|..+.+.+..|+..+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 308
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.57 E-value=1.7e+02 Score=28.96 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAK 886 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaak 886 (1117)
+.|+.|+.-|+.|+..|+++....+.|=+.+ ++-=|.....||++-..|-
T Consensus 99 e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L---V~RWM~rk~qEAe~MN~an 148 (152)
T 3a7p_A 99 ERLNAALISGTIENNVLQQKLSDLKKEHSQL---VARWLKKTEKETEAMNSEI 148 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444433333333222 2233455667777766554
No 309
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=31.50 E-value=87 Score=23.82 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~ 853 (1117)
..||..|..+-+.|+.+
T Consensus 9 enevaslenenetlkkk 25 (49)
T 3he5_A 9 ENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHh
Confidence 34566666666666554
No 310
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.47 E-value=48 Score=27.85 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
+++..|..+++.|+++-..+..+|..+++++
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554443
No 311
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.46 E-value=62 Score=27.24 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
+.+..|..+|+.|+.+-..+..++..+++.+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777776666666666666655543
No 312
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=31.39 E-value=1.9e+02 Score=28.37 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=55.3
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhh-----------H
Q 001236 819 LSFSKSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQE--LELQKSTKKAQEAMAVAAEESSKAKA-----------A 885 (1117)
Q Consensus 819 ~~~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~--~~~~~~~~~~~e~~~~a~~e~~~~ka-----------a 885 (1117)
..|+......- .+...+|+.+|-.++...-++....- .+|.++++-+++-+..|...+=+-+. -
T Consensus 25 ~~F~~~l~~~~---~~~~~e~L~~ll~~I~~~G~rL~~~~t~~~l~~YK~lVk~Fl~~~v~~~~~l~~~~~~~r~gr~r~ 101 (145)
T 2qup_A 25 VSFSEVMGKQR---DEKAYERLQALMSKIDDQGKLLSETRTIEELRKYKELVKEFVGDAVELGLRLEERRGFNRRGRTKI 101 (145)
T ss_dssp CCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CCCCHHHH
T ss_pred cCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHheehhhcccCCCCCeeE
Confidence 34555544432 22334667777777766666654432 67889999998887777765544322 2
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 001236 886 KDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 886 ke~ik~lt~qlk~~~~~~~~~ 906 (1117)
=.+|+-+...|.+|++.|-.+
T Consensus 102 y~iV~~ID~kL~eLt~~ll~~ 122 (145)
T 2qup_A 102 YKIVKEVDRKLLDLTDAVLAK 122 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS
T ss_pred EeehhHHhHHHHHHHHHHHHh
Confidence 367899999999999987543
No 313
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=31.24 E-value=2.3e+02 Score=25.30 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAV 874 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~ 874 (1117)
.++-|.+-+.|..+...|.+-+.+|+.+-+.++..|..++.+++||..-
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~ 61 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKN 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556677778888888899999999999999999999999999998753
No 314
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=31.00 E-value=1.5e+02 Score=29.57 Aligned_cols=72 Identities=11% Similarity=0.121 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHhcC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQ--ELELQKSTKKAQEAMAVAAEESSKA----------KAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~--~~~~~~~~~~~~e~~~~a~~e~~~~----------kaake~ik~lt~qlk~~~~~~ 903 (1117)
..+|+.+|-.+|...-++.... -.+|.++++-+++-+..|...+=+- .--=.+|+.+..+|.+|++.|
T Consensus 49 ~~e~L~~Ll~~I~~~G~rL~~~~t~~~l~~YK~lVK~FL~~vv~~~~~l~~~~~~~~G~~r~y~iVk~ID~kL~eLt~~l 128 (162)
T 2p61_A 49 FEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRARLHLVVEEVNEKLMDLTEKI 128 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCceeEEeehHHhHHHHHHHHHH
Confidence 3466677766666666554433 2678899999998888887766555 233478999999999999987
Q ss_pred CCCC
Q 001236 904 PPGV 907 (1117)
Q Consensus 904 ~~~~ 907 (1117)
-.+.
T Consensus 129 l~~e 132 (162)
T 2p61_A 129 MKNE 132 (162)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 7643
No 315
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.93 E-value=2.2e+02 Score=32.68 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQRCEF 856 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~ 856 (1117)
..+|..+ |-+.+||..+.+++..|.+.|+.
T Consensus 37 ~~~l~~L-E~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 37 DGELLEI-EGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 23345777777777777766654
No 316
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.89 E-value=2.1e+02 Score=23.18 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
.++.+++.++..+.+.++....+|++++.++
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555444443
No 317
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=30.83 E-value=21 Score=30.86 Aligned_cols=55 Identities=20% Similarity=0.403 Sum_probs=35.9
Q ss_pred hcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhhhh
Q 001236 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLNKV 696 (1117)
Q Consensus 635 ~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~~~ 696 (1117)
...|..|+.... ......|-.|..-|+..|-. +.+.+.+...+ +|..|..++.+.
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~-----~~~~~~~~~~w-~C~~C~~~~~k~ 72 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVG-----IMAAPPEEMQW-FCPKCANKIKKD 72 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHT-----CSSCCCSSSCC-CCTTTHHHHCSC
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCC-----CCccCCCCCCE-EChhccCchhhc
Confidence 346778887642 33456788999889888843 22222223445 999999887653
No 318
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=30.82 E-value=3.3e+02 Score=27.26 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 850 LRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 850 l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
++++.+..-.++.+..++++..+.-.....+..+..|-+..+|+.+++++
T Consensus 47 ~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~~k~~~~~L~~~f~~~ 96 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKL 96 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444433333444455555555554443
No 319
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.23 E-value=3e+02 Score=25.54 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+|+..|.+|+..|+.+++..+.|-.-+=.||.+
T Consensus 18 ~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 18 ETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444
No 320
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.05 E-value=1.4e+02 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
+.|...=.-+.+.|..||-+|+.|++|-.....+.+.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334455556666666666665555554444
No 321
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=29.94 E-value=5.3e+02 Score=27.45 Aligned_cols=190 Identities=9% Similarity=0.001 Sum_probs=88.2
Q ss_pred CeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEec--CCeeEEEccCCcEEEEeCCCCCCc
Q 001236 345 FHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCG--PWHTALITSTGQLFTFGDGTFGVL 422 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G--~~HtlaLt~dG~Vy~wG~N~~GQL 422 (1117)
...++.+.+|.|+.|-.... .. ...+.. ....|..++.. ..+.+....+|.|+.|-.... +
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~--------~~-----~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~- 280 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEK--------TP-----TGKLIG--HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-N- 280 (425)
T ss_dssp TEEEEECGGGCEEEEETTCS--------SC-----SEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-S-
T ss_pred CEEEEEcCCCeEEEEEcCCC--------ce-----eeeecc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-c-
Confidence 44566678899999965410 00 011111 12345555543 334555567888988864321 0
Q ss_pred CCCCCCCcccceeecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeeccc
Q 001236 423 GHGDRKNVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL 502 (1117)
Q Consensus 423 G~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l 502 (1117)
....+.. ....|..++..... .+++ ...+|.|+.|-.... .+......
T Consensus 281 ---------~~~~~~~-~~~~i~~~~~~~~~-~l~~---------~~~d~~i~i~d~~~~------------~~~~~~~~ 328 (425)
T 1r5m_A 281 ---------SQNCFYG-HSQSIVSASWVGDD-KVIS---------CSMDGSVRLWSLKQN------------TLLALSIV 328 (425)
T ss_dssp ---------CSEEECC-CSSCEEEEEEETTT-EEEE---------EETTSEEEEEETTTT------------EEEEEEEC
T ss_pred ---------cceEecC-CCccEEEEEECCCC-EEEE---------EeCCCcEEEEECCCC------------cEeEeccc
Confidence 0111111 12245555544333 2221 156889999864321 11111111
Q ss_pred CCCCEEEEEec--CcEEEEEecCCeEEEEeCCCCCCCCCC---CCCC----Ccceeeec-ccCC-C-CeEEEEeCCCc--
Q 001236 503 IDYNFHKVACG--HSLTVGLTTSGHVFTMGSTVYGQLGNP---NADG----KLPCLVED-KLAG-E-SVEEIACGAYH-- 568 (1117)
Q Consensus 503 ~~~~I~~Ia~G--~~htlaLT~dG~Vy~wGsN~~GQLG~~---~~~~----~~P~~v~~-~l~~-~-~V~~Is~G~~H-- 568 (1117)
....|..++.. ..+.++-..+|.|+.|-.......... .... ..+..+.. .... . .|..++.....
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 23356666554 345556667889999875432211000 0000 00001111 1111 2 67777765443
Q ss_pred ceeeecCCeEEEEeC
Q 001236 569 VAVLTSRNEVYTWGK 583 (1117)
Q Consensus 569 t~aLT~dG~Vy~WG~ 583 (1117)
.++-..+|.|+.|-.
T Consensus 409 l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEESSSCCEEEEC
T ss_pred EEEEecCceEEEEee
Confidence 344567888888853
No 322
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.63 E-value=2.8e+02 Score=26.32 Aligned_cols=35 Identities=17% Similarity=0.478 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
+..|..|+.++++|+.++..++..|.....+...+
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~ 76 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA 76 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666665555555444433
No 323
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.47 E-value=1.5e+02 Score=29.51 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=22.0
Q ss_pred hhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLN----------QEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 827 ~~~~~~~~~l~----------~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
++|+.+|.++. +.+.|++++++..+...++...-|..
T Consensus 32 eDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~ 78 (158)
T 1naf_A 32 EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMS 78 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889998774 34455555555555555555544443
No 324
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.17 E-value=44 Score=29.44 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK 866 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~ 866 (1117)
-...+.++|..|..+-..|+.+.+++..|+..++.
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666655543
No 325
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.07 E-value=1.5e+02 Score=27.30 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
..++.+|+++...|+.+.+..+..+.
T Consensus 16 ~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 16 EEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333
No 326
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.01 E-value=3.1e+02 Score=24.41 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcC
Q 001236 891 SLTAQLKDMAERL 903 (1117)
Q Consensus 891 ~lt~qlk~~~~~~ 903 (1117)
-|-.+|++|.+||
T Consensus 74 eLE~~l~el~~rl 86 (89)
T 3bas_A 74 HLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4555888888776
No 327
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.91 E-value=41 Score=27.32 Aligned_cols=47 Identities=26% Similarity=0.554 Sum_probs=31.1
Q ss_pred hcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHh
Q 001236 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFA 691 (1117)
Q Consensus 635 ~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~ 691 (1117)
...|..|+.. .....|-.|...|+..|-. +++...|...+ .|..|..
T Consensus 9 ~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~-----ppl~~~p~g~W-~C~~C~~ 55 (56)
T 2yql_A 9 EDFCSVCRKS----GQLLMCDTCSRVYHLDCLD-----PPLKTIPKGMW-ICPRCQD 55 (56)
T ss_dssp CCSCSSSCCS----SCCEECSSSSCEECSSSSS-----SCCCSCCCSSC-CCHHHHC
T ss_pred CCCCccCCCC----CeEEEcCCCCcceECccCC-----CCcCCCCCCce-EChhhhC
Confidence 4468888753 3456788999999999943 34443444444 8999854
No 328
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.68 E-value=98 Score=28.13 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
.....+.|...+..+...++.|..+.+..+.+++++++++.+.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777888888888888888888888888888887653
No 329
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=28.66 E-value=2e+02 Score=27.44 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQEL 859 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~ 859 (1117)
|.++-.+|+.||..|+++++...+
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkq 28 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAET 28 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 330
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.66 E-value=3e+02 Score=26.24 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+..|..|+.++++|+.++..++..|..+..+...
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444333
No 331
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.62 E-value=3.9e+02 Score=25.39 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVES-------LRQRCEFQELELQKSTKKAQEAMAVAAEE-------SSKAKAAKDVIKSL 892 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~-------l~~~~~~~~~~~~~~~~~~~e~~~~a~~e-------~~~~kaake~ik~l 892 (1117)
..|...+..|.+|...|+.|+.. ...+|+.....-+.+..+++++-.--.+| .++.|-+.+-|..|
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777666665432 22233332222233334444443333333 23334444455555
Q ss_pred HHHHHHH
Q 001236 893 TAQLKDM 899 (1117)
Q Consensus 893 t~qlk~~ 899 (1117)
..||.++
T Consensus 117 k~~led~ 123 (129)
T 2fxo_A 117 KRDIDDL 123 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566554
No 332
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.56 E-value=54 Score=29.51 Aligned_cols=39 Identities=28% Similarity=0.244 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 830 KKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 830 ~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
|.-++.+-++|..|..+-..|+.+.+++..|++.++.-+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666666655444
No 333
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=28.51 E-value=1.1e+02 Score=26.00 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQV------------ESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 835 ~l~~ev~~l~~qv------------~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
-|..|+.+|+.|. ..|.+|.+....||+++.+++.
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777765 4778888888888888777765
No 334
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=28.28 E-value=3.7e+02 Score=25.97 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 001236 881 KAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 881 ~~kaake~ik~lt~qlk~~ 899 (1117)
...+.-+-|+.++.+++++
T Consensus 89 ~l~~~w~~l~~l~~~c~~~ 107 (154)
T 3opc_A 89 ELGPLWQALQANAAQAREH 107 (154)
T ss_dssp GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555543
No 335
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.06 E-value=3.6e+02 Score=26.82 Aligned_cols=54 Identities=6% Similarity=0.186 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHhc
Q 001236 849 SLRQRCEFQELELQKSTKKAQEAMAVAAEESSKA----------KAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 849 ~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~----------kaake~ik~lt~qlk~~~~~ 902 (1117)
.++++.+..-.++.+..++++..+.-...+.++. +..|-...+|..+|+++...
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~ 141 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSD 141 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665554433332211 33455667777777766543
No 336
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.02 E-value=4.5e+02 Score=26.85 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
..|+.+|+...+.|+.++.-+|+.-.-+.++..-+..-..+=-.|-..|-|-+--|...|.+
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444555556777777777677666554
No 337
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.81 E-value=3.5e+02 Score=24.63 Aligned_cols=32 Identities=6% Similarity=0.057 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
.+...++.++..|..+....+.++..+++.+.
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444445544444444
No 338
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=27.78 E-value=1.2e+02 Score=34.19 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc-----CCCCCCCC
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER-----LPPGVYDP 910 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~-----~~~~~~~~ 910 (1117)
|.+|...|+..|+.++ ++++..+.++++..|+.++ +=.+-|++-|+.|..+|.++.++ ||.+.+|.
T Consensus 34 ~~ke~~~l~~~v~~~~--------~~~~~~~~~~~~~el~~D~-e~~~~a~~e~~~l~~~~~~le~~l~~lLlp~~~~D~ 104 (354)
T 3d5a_X 34 LSRRYAEMGEVIGLIR--------EYRKVLEDLEQAESLLDDP-ELKEMAKAEREALLARKEALEKELERHLLPKDPMDE 104 (354)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTSTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCC
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 4456666666555443 2333334444555554322 22344555566677666666543 67776543
No 339
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.75 E-value=75 Score=30.85 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA-MAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~-~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
++...|+.+...|.......+.|+.++..++.+. -..+.-|+.|.+.-+| +..||+.|=+
T Consensus 25 ~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E-lE~LTasLFe 85 (135)
T 2e7s_A 25 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE-VEDLTASLFD 85 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4445555566666666555667777666665542 2334445555555555 3556665433
No 340
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=27.61 E-value=5.4e+02 Score=26.76 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=11.3
Q ss_pred cceeeecCCe-EEEEeCC
Q 001236 568 HVAVLTSRNE-VYTWGKG 584 (1117)
Q Consensus 568 Ht~aLT~dG~-Vy~WG~n 584 (1117)
+.++++.+|+ +|+-+.+
T Consensus 317 ~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEECTTSCEEEEEEEC
T ss_pred CeEEEcCCCCEEEEEEcc
Confidence 4567788886 7765544
No 341
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.55 E-value=4.4e+02 Score=26.46 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHH
Q 001236 827 DSLKKTNELLNQ 838 (1117)
Q Consensus 827 ~~~~~~~~~l~~ 838 (1117)
..|..+|+.|..
T Consensus 13 kQL~E~n~kLk~ 24 (168)
T 3o0z_A 13 KQLEEANDLLRT 24 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345566666654
No 342
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.53 E-value=2.1e+02 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
.+|-.+|+.+|+.|+ .||..+++..++
T Consensus 45 L~EN~~Lh~~ie~l~-------eEi~~lk~en~e 71 (83)
T 1uii_A 45 LKENEKLHKEIEQKD-------NEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 355556665555544 444444444444
No 343
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.44 E-value=1.2e+02 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
|-+++|+.++..|+.....++.+|+.++.+++
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554
No 344
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.37 E-value=2.9e+02 Score=23.55 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 852 QRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
.+....-.+|..++.++-.+-...-|+--|-.+++++|.++.++..++
T Consensus 25 ~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~~el 72 (73)
T 3htk_B 25 SKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNEREADL 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHHHhh
Confidence 334445567777888888888888888888899999999999887764
No 345
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=27.20 E-value=8.6e+02 Score=28.99 Aligned_cols=109 Identities=15% Similarity=0.063 Sum_probs=57.2
Q ss_pred CEEEEEec---CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEe----cCCeEEEEEcCCcE
Q 001236 284 DVHHIACG---VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTC----GEFHTCAVTMAGEL 356 (1117)
Q Consensus 284 ~I~~Ia~G---~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~----G~~hs~aLT~dG~V 356 (1117)
.|..++.. ....+....+|.|+.|-...... ...+.......|..++. .....++...+|.|
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 210 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEE
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEE
Confidence 45666653 34555667889999996432111 11111111133444444 34455556678999
Q ss_pred EEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC--eeEEEccCCcEEEEeCCC
Q 001236 357 YTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW--HTALITSTGQLFTFGDGT 418 (1117)
Q Consensus 357 ysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~--HtlaLt~dG~Vy~wG~N~ 418 (1117)
+.|-... +. ....+.. ....|..++.... ..+..+.+|.|+.|-...
T Consensus 211 ~~~d~~~---~~----------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 211 KIWDYQT---KS----------CVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEETTT---TE----------EEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEECCC---Cc----------EEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 9995431 10 1122221 1234666665443 344556789999996543
No 346
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.19 E-value=1.5e+02 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=10.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHH
Q 001236 845 AQVESLRQR----CEFQELELQKSTKKA 868 (1117)
Q Consensus 845 ~qv~~l~~~----~~~~~~~~~~~~~~~ 868 (1117)
+|+..|+++ .+.+..+|++.++++
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i 67 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555544 344444444444433
No 347
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=27.15 E-value=1.6e+02 Score=36.62 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=44.2
Q ss_pred CcCeeEeEEEeCCCCEEEEecCCCCc----ccccceeeecccccCChhHhhhcCCCCCCceEEEEEcCC------cceEE
Q 001236 34 GKPKFYPFRLSNDETSLIWISSSGER----SLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNG------KRSLD 103 (1117)
Q Consensus 34 ~kpk~r~f~Ls~d~~~l~W~s~~~~~----~l~l~~I~eI~~G~~t~~f~r~~~~~~~~~~FSIiy~~~------~rtLD 103 (1117)
|..|..+|.|.. ..|.|++...++ .++|+.++ +|.... .| .....-|+|.+.++ .|+||
T Consensus 556 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (772)
T 3zvr_A 556 GGSKEYWFVLTA--ENLSWYKDDEEKEKKYMLSVDNLK-LRDVEK--GF------MSSKHIFALFNTEQRNVYKDYRQLE 624 (772)
T ss_dssp --CCEEEEEEES--SEEEEESSTTCCCEEEEEECTTEE-EEEC---------------CEEEEEEETTSSCSBTTBSEEE
T ss_pred CCCccceeeccc--cccccccchhhhcccccccccccc-cchhhh--cc------ccccccccccCCccccccchhhhhh
Confidence 444555666764 578898774433 35554443 222221 12 11235677777543 58999
Q ss_pred EEeCCHHHHHHHHHHH
Q 001236 104 LICKDKVEAEVWIAGL 119 (1117)
Q Consensus 104 Lva~~~~ea~~Wv~GL 119 (1117)
|.|.+.++.+.|...+
T Consensus 625 l~~~~~~~~~~~~~~~ 640 (772)
T 3zvr_A 625 LACETQEEVDSWKASF 640 (772)
T ss_dssp EEESSHHHHHHHHHHH
T ss_pred hhccccccchhhHHhh
Confidence 9999999999999865
No 348
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.08 E-value=92 Score=29.69 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQK 863 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~ 863 (1117)
.+||.+||+++..|+++++.++.-++.
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~e 43 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQE 43 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888888888766655443
No 349
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.96 E-value=48 Score=27.40 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=22.5
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 820 SFSKSITDSLKKTNELLNQEVLKLRAQVESLRQ 852 (1117)
Q Consensus 820 ~~~~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~ 852 (1117)
..|+.-+..|-|.|..|++|+..||..+.+|..
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 344555666777788888887777777666643
No 350
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=26.93 E-value=1.8e+02 Score=27.00 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRA---QVESLRQRCEFQELEL 861 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~---qv~~l~~~~~~~~~~~ 861 (1117)
+.|...+|.+|...+.. +++.|+.+.+....=|
T Consensus 7 l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L 42 (115)
T 3qfl_A 7 IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAAL 42 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 67888899999866544 5555555554444333
No 351
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=26.89 E-value=5.5e+02 Score=26.58 Aligned_cols=117 Identities=9% Similarity=-0.020 Sum_probs=63.7
Q ss_pred CEEEEEe--cCc-eEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccC-CCCCeEEEEec-CCeEEEEEcCCcEEE
Q 001236 284 DVHHIAC--GVR-HAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESL-TMTSVDFVTCG-EFHTCAVTMAGELYT 358 (1117)
Q Consensus 284 ~I~~Ia~--G~~-Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l-~~~~I~~Va~G-~~hs~aLT~dG~Vys 358 (1117)
.|..++. ... ..+.-..+|.|+.|-....+++ ..+... ....|..++.. ....+....||.|+.
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~i 126 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEE
Confidence 4555554 344 6667778999999954122221 222220 22456666554 456666778999999
Q ss_pred EcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCCeeEEEccCCcEEEEeCCC
Q 001236 359 WGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPWHTALITSTGQLFTFGDGT 418 (1117)
Q Consensus 359 WG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~HtlaLt~dG~Vy~wG~N~ 418 (1117)
|-... .+.........+ +........|..++......++.+.+|.|+.|-...
T Consensus 127 wd~~~-----~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 127 IDPRN-----YGDGVIAVKNLN--SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp ECHHH-----HTTBCEEEEESC--SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred Ecccc-----cccccccccCCe--eeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 94320 000000000011 111112346788888777777778899999997544
No 352
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=26.77 E-value=2e+02 Score=27.68 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-HHHHHhhhhhHHH
Q 001236 827 DSLKKTNELLNQEVLKLRA----QVESLRQRCEFQELELQKSTKKAQEAMA--------------V-AAEESSKAKAAKD 887 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~----qv~~l~~~~~~~~~~~~~~~~~~~e~~~--------------~-a~~e~~~~kaake 887 (1117)
+.+....++|.+|-.-|.+ .++.+.++-+..-.+|+...++-.+.+. + +.++.....+.-+
T Consensus 17 ~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~~~~~~~l~~~~~ 96 (157)
T 2fup_A 17 GHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARERADGAELLARGD 96 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhccccchHHHHHHH
Confidence 3355555666666655554 3444444444444444444443221111 0 1234444456666
Q ss_pred HHHHHHHHHHHHHh
Q 001236 888 VIKSLTAQLKDMAE 901 (1117)
Q Consensus 888 ~ik~lt~qlk~~~~ 901 (1117)
-|+.++.++|++-+
T Consensus 97 ~l~~l~~~~~~~N~ 110 (157)
T 2fup_A 97 ELGELLERCQQANL 110 (157)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776654
No 353
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.62 E-value=1.1e+02 Score=35.91 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=21.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
+..-|.|.|.=|..-|.+||+||+.|.+-
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhh
Confidence 45667777877888888888887777443
No 354
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.43 E-value=48 Score=31.27 Aligned_cols=21 Identities=19% Similarity=0.525 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
.+.|.+|+++|...+..+++|
T Consensus 5 ke~~K~Eiq~L~drLD~~~rK 25 (123)
T 2lf0_A 5 KEVEKNEIKRLSDRLDAIRHQ 25 (123)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888887777765
No 355
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.17 E-value=2.7e+02 Score=25.75 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001236 855 EFQELELQKSTKKAQEAMAV 874 (1117)
Q Consensus 855 ~~~~~~~~~~~~~~~e~~~~ 874 (1117)
..+|.+|--..+||++|..-
T Consensus 45 ~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 45 TAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554433
No 356
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=26.15 E-value=6.1e+02 Score=26.93 Aligned_cols=240 Identities=13% Similarity=0.073 Sum_probs=108.7
Q ss_pred CEEEEEec--CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec--CCeEEEEEcCCcEEEE
Q 001236 284 DVHHIACG--VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG--EFHTCAVTMAGELYTW 359 (1117)
Q Consensus 284 ~I~~Ia~G--~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG~VysW 359 (1117)
.|..|+.. ....+....+|.|+.|- ..++ ....+.. ....|..++.. ..+.+....+|.|+.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 56666665 34455567789999995 1111 0111111 12456666653 3445566778999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeec---CCCCCCcEEEEEe-cCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCccccee
Q 001236 360 GDGTHNAGLLGHGTDVSHWIPKRIS---GPLEGLQVASVTC-GPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPRE 435 (1117)
Q Consensus 360 G~n~~~~GqLG~g~~~~~~~P~~V~---~~l~~~~Iv~Va~-G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~ 435 (1117)
-... ...+..-.... .....+. ....+..|..++. .....++.+.+|.|+.|-......+ ..
T Consensus 177 d~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~-----------~~ 242 (425)
T 1r5m_A 177 NVIS--GTVMQHFELKE-TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT-----------GK 242 (425)
T ss_dssp ETTT--TEEEEEECCC----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS-----------EE
T ss_pred ECCC--CcEEEEeeccc-cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee-----------ee
Confidence 6531 11100000000 0000000 0000000211211 1234566677888888865432110 11
Q ss_pred ecccccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEEEEEecCc
Q 001236 436 VESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFHKVACGHS 515 (1117)
Q Consensus 436 V~~l~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~ 515 (1117)
+.. ....|..++.......+++ ...+|.|+.|-...... ...+. .....|..++....
T Consensus 243 ~~~-~~~~i~~~~~~~~~~~l~~---------~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 243 LIG-HHGPISVLEFNDTNKLLLS---------ASDDGTLRIWHGGNGNS-----------QNCFY-GHSQSIVSASWVGD 300 (425)
T ss_dssp ECC-CSSCEEEEEEETTTTEEEE---------EETTSCEEEECSSSBSC-----------SEEEC-CCSSCEEEEEEETT
T ss_pred ecc-CCCceEEEEECCCCCEEEE---------EcCCCEEEEEECCCCcc-----------ceEec-CCCccEEEEEECCC
Confidence 111 1123444443322222221 14588899986432110 01111 12234666554433
Q ss_pred -EEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeCCC--cceeeecCCeEEEEeCC
Q 001236 516 -LTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACGAY--HVAVLTSRNEVYTWGKG 584 (1117)
Q Consensus 516 -htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G~~--Ht~aLT~dG~Vy~WG~n 584 (1117)
..++...+|.|+.|-.... .....+. .....|..++.... ..++-..+|.|+.|-..
T Consensus 301 ~~l~~~~~d~~i~i~d~~~~----------~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 301 DKVISCSMDGSVRLWSLKQN----------TLLALSI--VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TEEEEEETTSEEEEEETTTT----------EEEEEEE--CTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred CEEEEEeCCCcEEEEECCCC----------cEeEecc--cCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 6666677899999975321 1111111 12345666665533 33444578899999654
No 357
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.11 E-value=69 Score=26.66 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKS 864 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~ 864 (1117)
.+..|..+|+.|+.+-..+..+|..+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 358
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=26.02 E-value=1.3e+02 Score=27.40 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQV------------ESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 835 ~l~~ev~~l~~qv------------~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
-|..|+.+|+.|. ..|.+|.+....||+++.+++..
T Consensus 27 ~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 27 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp HHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888876 47888888888888888877765
No 359
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=25.81 E-value=5.4e+02 Score=26.17 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=7.9
Q ss_pred EEEEecCCeEEEE
Q 001236 517 TVGLTTSGHVFTM 529 (1117)
Q Consensus 517 tlaLT~dG~Vy~w 529 (1117)
.++++.+|++|+.
T Consensus 255 ~i~~~~~g~l~vs 267 (286)
T 1q7f_A 255 DVALMDDGSVVLA 267 (286)
T ss_dssp EEEEETTTEEEEE
T ss_pred eEEECCCCcEEEE
Confidence 4556666666655
No 360
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=25.76 E-value=6.1e+02 Score=28.58 Aligned_cols=64 Identities=11% Similarity=0.035 Sum_probs=42.4
Q ss_pred EEEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcC
Q 001236 285 VHHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 285 I~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~ 361 (1117)
|.+|++ ....+++..+|.|+.|=-....+ + ..+..+ ...|..+.+-....++++.+|.|++|-.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~---~--------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE---F--------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC---E--------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc---c--------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEc
Confidence 889999 66677777999999996444221 1 011111 1245666666656788899999999944
No 361
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.73 E-value=1.2e+02 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
++-...|+.|++.|.++...+.-+++....+++.
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~q 52 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQ 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4555666666666666666666666666666655
No 362
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=25.68 E-value=79 Score=27.99 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQRCEFQEL 859 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~~~~~~~~ 859 (1117)
|..||+||++.....+....-+-+
T Consensus 20 LkkevkKL~~~A~q~kmdLHDLaE 43 (81)
T 3csx_A 20 LKKKVRKLNSKAGQMKMDLHDLAE 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777766665555544443
No 363
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.35 E-value=1.1e+02 Score=35.23 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+.+++..+-|.+++++++++++.|++|....+.+-.++..+++|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555554444444444444444
No 364
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.25 E-value=3e+02 Score=31.82 Aligned_cols=33 Identities=3% Similarity=-0.134 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
++++..+.+++.|+++-+.++.+|++..++++|
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 334444444444444444444444444444444
No 365
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.07 E-value=2e+02 Score=24.91 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
++..-|.-|.+.|..|+.+++.-+.+-+.+..||++....+
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666677777766666666666666666554443
No 366
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.98 E-value=1.4e+02 Score=34.27 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001236 831 KTNELLNQEVLKLRAQVESLRQR 853 (1117)
Q Consensus 831 ~~~~~l~~ev~~l~~qv~~l~~~ 853 (1117)
+--+.|.+++.+|.++++.|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKD 269 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555443
No 367
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=24.84 E-value=8e+02 Score=27.82 Aligned_cols=223 Identities=9% Similarity=0.008 Sum_probs=107.2
Q ss_pred CEEEEEecCc---eEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCC---CeEEEEecCC---eEEEEEcCC
Q 001236 284 DVHHIACGVR---HAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMT---SVDFVTCGEF---HTCAVTMAG 354 (1117)
Q Consensus 284 ~I~~Ia~G~~---Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~---~I~~Va~G~~---hs~aLT~dG 354 (1117)
.|..++.... ..+....+|.|+.|-.... + ....+... .. .|..++.... ..+..+.+|
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~----------~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-K----------FSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTB-E----------EEEEECSS-SCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-c----------eeeeeccc-CCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 3555555433 4566678899999953221 0 01111111 22 5777776533 455567899
Q ss_pred cEEEEcCCCCCCCccCCCCCcceeeeeeecCC--CCCCcEEEEEe-cCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcc
Q 001236 355 ELYTWGDGTHNAGLLGHGTDVSHWIPKRISGP--LEGLQVASVTC-GPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVS 431 (1117)
Q Consensus 355 ~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~--l~~~~Iv~Va~-G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~ 431 (1117)
.|++|-... +. ....+... .....|..++. ...+.+....+|.|..|-....-.+
T Consensus 230 ~i~vwd~~~---~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--------- 287 (615)
T 1pgu_A 230 KISCFDGKS---GE----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV--------- 287 (615)
T ss_dssp CEEEEETTT---CC----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE---------
T ss_pred eEEEEECCC---CC----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE---------
Confidence 999995431 11 01111000 12335666655 3345555567889999864321100
Q ss_pred cceeeccc---ccceEEEEeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeecccCCCCEE
Q 001236 432 YPREVESL---SGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYNFH 508 (1117)
Q Consensus 432 ~P~~V~~l---~~~kI~~VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~ 508 (1117)
..+... ....+..+.......++. ...+|.|+.|-.... .+..........|.
T Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~g~i~~~d~~~~------------~~~~~~~~~~~~v~ 343 (615)
T 1pgu_A 288 --QKWTLDKQQLGNQQVGVVATGNGRIIS----------LSLDGTLNFYELGHD------------EVLKTISGHNKGIT 343 (615)
T ss_dssp --EEEECCTTCGGGCEEEEEEEETTEEEE----------EETTSCEEEEETTEE------------EEEEEECCCSSCEE
T ss_pred --EEEcCCCCcccCceeEEEeCCCCeEEE----------EECCCCEEEEECCCC------------cEEEEEeCCCCCEE
Confidence 000000 011222222211112222 145888888864321 11111112234577
Q ss_pred EEEecCcEEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEEEeC-CCcceeeecCCeEEEEeC
Q 001236 509 KVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEIACG-AYHVAVLTSRNEVYTWGK 583 (1117)
Q Consensus 509 ~Ia~G~~htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~Is~G-~~Ht~aLT~dG~Vy~WG~ 583 (1117)
.++. .. .+.-..+|.|..|-.. .+. ......|..++.. ....+....+|.|..|-.
T Consensus 344 ~~~~-~~-l~~~~~dg~i~~w~~~----------------~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~ 400 (615)
T 1pgu_A 344 ALTV-NP-LISGSYDGRIMEWSSS----------------SMH-QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI 400 (615)
T ss_dssp EEET-TT-TEEEETTSCEEETTTT----------------EEE-CCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred EEEe-cC-cEEECCCCeEEEEEch----------------hhc-CcccCceEEEEECCCcEEEEEeCCCCEEEEEc
Confidence 7777 55 5566778999988644 111 1223455555553 233344456677777743
No 368
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=24.49 E-value=2.7e+02 Score=29.44 Aligned_cols=25 Identities=12% Similarity=0.369 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCCC
Q 001236 882 AKAAKDVIKSLTAQLKDMAERLPPG 906 (1117)
Q Consensus 882 ~kaake~ik~lt~qlk~~~~~~~~~ 906 (1117)
++.|++.|+.+..++++|++.+|+.
T Consensus 70 ~~~A~~~l~~~~~~~~~L~~~l~~~ 94 (240)
T 1j1j_A 70 CLKAREHFGTVKTHLTSLKTKFPAE 94 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 7778888999999999999999864
No 369
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.47 E-value=1.5e+02 Score=34.95 Aligned_cols=49 Identities=12% Similarity=0.300 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
+.++|.+.-..|.+||..--+++..|+.-.+.|-.||||++.-|.-.+.
T Consensus 111 ~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 111 VSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888665588888999988899999887665554443
No 370
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.39 E-value=1.7e+02 Score=26.76 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 833 NELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 833 ~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
.+-....+.+++++++.+.+++...+.+|.-+++|++
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344567788888999999999999999998888886
No 371
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=24.37 E-value=1.2e+02 Score=33.17 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
.++..+++|++..+.+.+..+.+++|.+
T Consensus 76 a~l~~~~a~l~~a~~~~~~a~~~~~r~~ 103 (341)
T 3fpp_A 76 ATLMELRAQRQQAEAELKLARVTYSRQQ 103 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444444444443
No 372
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=24.32 E-value=81 Score=34.42 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALI 123 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~~Li 123 (1117)
...+|.|...++ +..=|.|.+.+|++.|+..|+..+
T Consensus 88 Kk~vF~L~t~~g-~~yLFQA~s~eEm~~WI~aI~~a~ 123 (279)
T 3a8n_A 88 KDFVFCLSNSLG-DAFLFQTTSQTELENWITAIHSAC 123 (279)
T ss_dssp SCSCCCEEETTT-EEEECCCSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCC-CEEEEeCCCHHHHHHHHHHHHHHH
Confidence 346899987643 567799999999999999999776
No 373
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.16 E-value=1.2e+02 Score=26.73 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001236 847 VESLRQRCEFQELELQ 862 (1117)
Q Consensus 847 v~~l~~~~~~~~~~~~ 862 (1117)
|+.|+++...+..+|+
T Consensus 45 ~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 45 VLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 374
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.09 E-value=3.9e+02 Score=28.32 Aligned_cols=126 Identities=13% Similarity=0.026 Sum_probs=69.4
Q ss_pred EEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec--CCeEEEEEcCCcEEEEcCCCC
Q 001236 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG--EFHTCAVTMAGELYTWGDGTH 364 (1117)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G--~~hs~aLT~dG~VysWG~n~~ 364 (1117)
.++.+..+.+++|+.|++|.+-...- -.+..........+....+..|+.+... ..+.+++|++|.+.-.-..
T Consensus 39 ~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~-- 113 (256)
T 1zvt_A 39 VKGKSNQPVVFVDSTGRSYAIDPITL---PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN-- 113 (256)
T ss_dssp EEEETTSCEEEEETTSEEEEECGGGS---CCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG--
T ss_pred EEeCCCCEEEEEeCCCeEEEEEHHHC---CCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH--
Confidence 34556778899999999999975542 1110111111113333346678887663 4457788999987766432
Q ss_pred CCCccCCCCCcceeeeeeecCCCCCCcEEEE--E-ecCCeeEEEccCCcEEEEeCCCCCCcCC
Q 001236 365 NAGLLGHGTDVSHWIPKRISGPLEGLQVASV--T-CGPWHTALITSTGQLFTFGDGTFGVLGH 424 (1117)
Q Consensus 365 ~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~V--a-~G~~HtlaLt~dG~Vy~wG~N~~GQLG~ 424 (1117)
.+-....+ -..+..+.++..++.+ . .+..+.+++|++|++..|-.+..-.+|.
T Consensus 114 e~~~~~r~-------G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 114 DLVARNRA-------GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp GGCCCSTT-------CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred HhcccCcC-------ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 11000000 0011111122333332 2 3667899999999999988765544443
No 375
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=23.92 E-value=2.4e+02 Score=23.67 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 832 TNELLNQEVLKLRAQVESLRQRCEFQELELQKST 865 (1117)
Q Consensus 832 ~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~ 865 (1117)
.=..|+.||.++..+++.+.+|+..-...|+.++
T Consensus 21 Iv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le 54 (65)
T 3m0d_C 21 IVAVLNKEVEASHLALATSIHQSQLDRERILSLE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334566777777676666666554433333333
No 376
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=23.87 E-value=1e+03 Score=28.70 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=41.8
Q ss_pred CCEEEEEec----CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec----CCeEEEEEcCC
Q 001236 283 LDVHHIACG----VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG----EFHTCAVTMAG 354 (1117)
Q Consensus 283 ~~I~~Ia~G----~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G----~~hs~aLT~dG 354 (1117)
..|..|+.. ....+....||.|+.|-.... ...+..........|..++.. ....+..+.||
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 356677764 455666778999999964321 001111111123467777765 34566678899
Q ss_pred cEEEEcCC
Q 001236 355 ELYTWGDG 362 (1117)
Q Consensus 355 ~VysWG~n 362 (1117)
.|++|-..
T Consensus 124 ~I~vwdl~ 131 (753)
T 3jro_A 124 KVSVVEFK 131 (753)
T ss_dssp EEEEEECC
T ss_pred cEEEEEee
Confidence 99999654
No 377
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=23.79 E-value=4.6e+02 Score=28.90 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHH
Q 001236 884 AAKDVIKSLTAQLKD 898 (1117)
Q Consensus 884 aake~ik~lt~qlk~ 898 (1117)
...+.++.+..++++
T Consensus 126 ~~~~~~~~~~~~~~~ 140 (341)
T 3zx6_A 126 RGGKVVDNVVQTMRD 140 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 378
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=23.70 E-value=61 Score=32.10 Aligned_cols=55 Identities=29% Similarity=0.302 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHhcCC
Q 001236 850 LRQRCEFQELELQKSTKKAQEAMAVAA-EESSKAKAAKDVIKSLTAQLKDMAERLP 904 (1117)
Q Consensus 850 l~~~~~~~~~~~~~~~~~~~e~~~~a~-~e~~~~kaake~ik~lt~qlk~~~~~~~ 904 (1117)
|+++.+....+..+..+.++||.+..- .|-+--.|||+-...|..+++++.++|-
T Consensus 15 L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~ 70 (156)
T 2f23_A 15 LMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILS 70 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334455555566666544321 1444466788877777777666666553
No 379
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.63 E-value=76 Score=21.55 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 826 TDSLKKTNELLNQEVLKLRAQVESLRQ 852 (1117)
Q Consensus 826 ~~~~~~~~~~l~~ev~~l~~qv~~l~~ 852 (1117)
+|.|.--|+.|.|.+.-|+..+.+|+|
T Consensus 2 idalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhcC
Confidence 356677788888888877777777764
No 380
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=23.59 E-value=2.5e+02 Score=29.89 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCC
Q 001236 881 KAKAAKDVIKSLTAQLKDMAERLPPGV 907 (1117)
Q Consensus 881 ~~kaake~ik~lt~qlk~~~~~~~~~~ 907 (1117)
-++.|++-|+.+..++++|++.|+...
T Consensus 72 ~~~eA~~~l~~i~~~~~~L~~~l~~~~ 98 (249)
T 3axj_A 72 ACGLARKQVELCAQKYQKLAELVPAGQ 98 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 378888889999999999999998643
No 381
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.53 E-value=1.8e+02 Score=23.26 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQ 857 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~ 857 (1117)
|.+.+|+.=-..|.+|....
T Consensus 4 q~l~kLKe~n~~L~~kv~~L 23 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHL 23 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667776666666655444
No 382
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.53 E-value=7.5e+02 Score=27.01 Aligned_cols=130 Identities=13% Similarity=-0.067 Sum_probs=71.5
Q ss_pred EEEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEec-----CCeEEEEEcCCcEEEEc
Q 001236 286 HHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCG-----EFHTCAVTMAGELYTWG 360 (1117)
Q Consensus 286 ~~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G-----~~hs~aLT~dG~VysWG 360 (1117)
..++.+..+.+++|+.|++|.+-...--..|.. .........+....+..|+.+..- ..+.+++|++|.+.-.-
T Consensus 44 ~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~-a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 44 MLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK-DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT-SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC-CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 346677888999999999999875542222211 011111122222345667765443 23578889999877654
Q ss_pred CCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEE--EecCCeeEEEccCCcEEEEeCCCCCCcCC
Q 001236 361 DGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASV--TCGPWHTALITSTGQLFTFGDGTFGVLGH 424 (1117)
Q Consensus 361 ~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~V--a~G~~HtlaLt~dG~Vy~wG~N~~GQLG~ 424 (1117)
... +-....+ .........++..++.+ ..+..+.+++|++|+++.|-.+..-.+|.
T Consensus 123 l~e--~~~~~r~------~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR 180 (323)
T 1wp5_A 123 LKH--YKAQRYS------KPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV 180 (323)
T ss_dssp GGG--GCCSCCS------SCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred HHH--hhhcccc------CceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 321 1100000 00111112233445443 34677899999999999998765544443
No 383
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=23.51 E-value=6.4e+02 Score=26.18 Aligned_cols=17 Identities=35% Similarity=0.288 Sum_probs=12.2
Q ss_pred CeEEEEEcCCcEEEEcCC
Q 001236 345 FHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 345 ~hs~aLT~dG~VysWG~n 362 (1117)
.|++++. +|+||++|-.
T Consensus 101 ~~~~~~~-~~~iyv~GG~ 117 (302)
T 2xn4_A 101 TLGAAVL-NGLLYAVGGF 117 (302)
T ss_dssp SCEEEEE-TTEEEEEEEE
T ss_pred ceEEEEE-CCEEEEEcCC
Confidence 4666554 8899999853
No 384
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.44 E-value=4e+02 Score=30.59 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=20.3
Q ss_pred hhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLR---AQVESLRQRCEFQELELQKS 864 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~---~qv~~l~~~~~~~~~~~~~~ 864 (1117)
+.|-|-|-..-+..+|..|. .||++|+...+..-..||.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555544444443 35555555555555555443
No 385
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.40 E-value=2.8e+02 Score=26.06 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKD 898 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~ 898 (1117)
++.+|++++..|+. +-.+...-.+.+++.|.-++||..|- |-.|+.|...
T Consensus 7 ~~~~lq~~~~ql~~----qL~k~~~~r~~Le~~w~~k~E~~k~q------V~~L~~~~q~ 56 (112)
T 1x79_B 7 QVKKLQLMLRQAND----QLEKTMKDKQELEDFIKQSSEDSSHQ------ISALVLRAQA 56 (112)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=23.33 E-value=7.5e+02 Score=26.98 Aligned_cols=223 Identities=10% Similarity=-0.038 Sum_probs=110.2
Q ss_pred EEecCCeEEEEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC-----CeeEEEccCCcEEEE
Q 001236 340 VTCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP-----WHTALITSTGQLFTF 414 (1117)
Q Consensus 340 Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~-----~HtlaLt~dG~Vy~w 414 (1117)
++.+..+.+++|+.|++|..-.. ..-..|... .-......+. +.++.+|+.+..-. .+.+++|++|.+.-.
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~--elp~~~r~a-~G~~i~~~i~-L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt 121 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVH--ELPDIRWKD-LGQHIANIIP-IDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKT 121 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGG--GSCBCCTTS-CCEEGGGTSC-CCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEHH--HCcCCCCCC-CCcChhhccC-CCCCCEEEEEEEecccCCCceEEEEeCCCeEEEe
Confidence 55678889999999999988543 111112111 0111111222 33566788765433 357888999988877
Q ss_pred eCCCCCCcCCCCCCCccccee-ecccccceEEE--EeeCCceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCC
Q 001236 415 GDGTFGVLGHGDRKNVSYPRE-VESLSGLRTIA--VACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKE 491 (1117)
Q Consensus 415 G~N~~GQLG~g~~~~~~~P~~-V~~l~~~kI~~--VacG~~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~ 491 (1117)
-...|-....+ .-.. +..-.+..++. +..+..+.+++ |++|.++.+-..+--..|....
T Consensus 122 ~l~e~~~~~r~------~G~~ai~l~e~d~lv~~~~~~~~~~i~l~-----------T~~G~~irf~~~ev~~~gR~a~- 183 (323)
T 1wp5_A 122 ELKHYKAQRYS------KPLTGINLKNDDQVVDVHLTDGMNELFLV-----------THNGYALWFDESEVSIVGVRAA- 183 (323)
T ss_dssp EGGGGCCSCCS------SCEECSCCCTTCCEEEEEEECSCSEEEEE-----------ETTSEEEEEEGGGSCBCCSSCC-
T ss_pred EHHHhhhcccc------CceEEEEeCCCCEEEEEEEeCCCCEEEEE-----------eCCCcEEEEEHHHCcccCCCCc-
Confidence 65444221100 0000 11111223332 22355555555 6799998887655433333111
Q ss_pred Ccccceeeccc-CCCCEEEEEe--cCc-EEEEEecCCeEEEEeCCCCCCCCCCCCCCCcceeeecccCCCCeEEE--EeC
Q 001236 492 PRLKPTCVPAL-IDYNFHKVAC--GHS-LTVGLTTSGHVFTMGSTVYGQLGNPNADGKLPCLVEDKLAGESVEEI--ACG 565 (1117)
Q Consensus 492 ~~~~P~~V~~l-~~~~I~~Ia~--G~~-htlaLT~dG~Vy~wGsN~~GQLG~~~~~~~~P~~v~~~l~~~~V~~I--s~G 565 (1117)
.+....+ .+..|+.+.. ... ..+.+|++|...-.-...+-.-+.+..-...+.... -.+..+..+ ..+
T Consensus 184 ----GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~--~~~~~l~~~~~v~~ 257 (323)
T 1wp5_A 184 ----GVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELK--ANPHRISGFVVAQD 257 (323)
T ss_dssp ----CEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCS--SSCCCEEEEEEECT
T ss_pred ----CEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecC--CCCceEEEEEEeCC
Confidence 1111112 2344555532 122 577778887755554444433332221111121111 112234432 345
Q ss_pred CCcceeeecCCeEEEEeCCCCCCCC
Q 001236 566 AYHVAVLTSRNEVYTWGKGANGRLG 590 (1117)
Q Consensus 566 ~~Ht~aLT~dG~Vy~WG~n~~GQLG 590 (1117)
..+.+++|++|.+.-.--+.--..|
T Consensus 258 ~~~i~~it~~g~~ir~~~~~i~~~~ 282 (323)
T 1wp5_A 258 SDTIYLQTEKSFIETIKVGDIRFSD 282 (323)
T ss_dssp TCEEEEEETTSCEEEEEGGGSCBCC
T ss_pred CCeEEEEeCCCeEEEEEhhhcCccC
Confidence 6788899999998877555443333
No 387
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.28 E-value=53 Score=30.63 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQR 853 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~ 853 (1117)
.+++|++|.+.|+++
T Consensus 8 ~~~~l~~~~~~l~~~ 22 (109)
T 2wg5_A 8 RMKQLEDKVEELLSK 22 (109)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566665555554
No 388
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=23.26 E-value=1.9e+02 Score=34.29 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=27.3
Q ss_pred cchhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 822 SKSITDSLKKTNE--LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 822 ~~~~~~~~~~~~~--~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
+..+.+.+++-+. .+..+|..|-.+-+.|..+.+.+..+.-...|++-+
T Consensus 16 ~~~v~~~~~~R~~~~~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~ 66 (522)
T 3vbb_A 16 PALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGE 66 (522)
T ss_dssp HHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666542 245666666665555555555555555555555544
No 389
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.22 E-value=2.2e+02 Score=25.13 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 828 SLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
++..-|.-|.+.|..|+.+++.-+++-+.+..||++....+
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666666666665554443
No 390
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=22.98 E-value=56 Score=27.06 Aligned_cols=50 Identities=18% Similarity=0.409 Sum_probs=32.8
Q ss_pred hcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhhh
Q 001236 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKLN 694 (1117)
Q Consensus 635 ~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l~ 694 (1117)
...|..|+. .....-|-+|...|+..|-. +.+...+...+ .|..|..+..
T Consensus 9 ~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~-----ppl~~~p~g~W-~C~~C~~~~~ 58 (61)
T 1mm2_A 9 MEFCRVCKD----GGELLCCDTCPSSYHIHCLN-----PPLPEIPNGEW-LCPRCTCPAL 58 (61)
T ss_dssp CSSCTTTCC----CSSCBCCSSSCCCBCSSSSS-----SCCSSCCSSCC-CCTTTTTTCC
T ss_pred CCcCCCCCC----CCCEEEcCCCCHHHcccccC-----CCcCcCCCCcc-CChhhcCchh
Confidence 456888875 23456788999999999943 33433344444 8999976543
No 391
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=22.68 E-value=3.9e+02 Score=26.15 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcC
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~~ 903 (1117)
+.|..|..|++..+...+-.+.+.....+|+.-+-.--..--.|..+|-.=|+.|-.+|+.|...|
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 392
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.58 E-value=3.6e+02 Score=25.87 Aligned_cols=38 Identities=11% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHhcC
Q 001236 866 KKAQEAMAVAAEESSK-------AKAAKDVIKSLTAQLKDMAERL 903 (1117)
Q Consensus 866 ~~~~e~~~~a~~e~~~-------~kaake~ik~lt~qlk~~~~~~ 903 (1117)
..|++|+.++....+| ...=|.+|..+-.|+++|.+.|
T Consensus 84 eDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 84 EDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666543333 2223568888888999988765
No 393
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=22.58 E-value=7.5e+02 Score=26.67 Aligned_cols=223 Identities=12% Similarity=0.054 Sum_probs=109.5
Q ss_pred EEEecCceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEe-----cCCeEEEEEcCCcEEEEcC
Q 001236 287 HIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTC-----GEFHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 287 ~Ia~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~-----G~~hs~aLT~dG~VysWG~ 361 (1117)
.++.+..+.+++|+.|++|.+-...--..|.. .........+....+..|+.+.. ...+.+++|++|.+.-.-.
T Consensus 48 ~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~-a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 48 LVANTHDHILCFSSRGRVYSMKVYQLPEATRG-ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEEETTCEEEEEETTSEEEEEEGGGSCCCCSS-SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EEECCCCEEEEEECCCEEEEEEhhHCcCCCCC-CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 46667888999999999999975542222211 01111112233334567777654 2345778899998776532
Q ss_pred CCCCCCccCCCCCcceeeeeeecCCCCCCcEEEE--EecCCeeEEEccCCcEEEEeCCCCCCcCCCCCCCcccceeeccc
Q 001236 362 GTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASV--TCGPWHTALITSTGQLFTFGDGTFGVLGHGDRKNVSYPREVESL 439 (1117)
Q Consensus 362 n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~V--a~G~~HtlaLt~dG~Vy~wG~N~~GQLG~g~~~~~~~P~~V~~l 439 (1117)
. .+-.... .........++..++.+ ..+..+.+++|++|+++.+-....-.+|....-. +.+..-
T Consensus 127 ~--e~~~~~r-------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L~ 193 (307)
T 1zi0_A 127 T--EFNRLRT-------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRLG 193 (307)
T ss_dssp G--GGTTCCT-------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCCC
T ss_pred H--Hhhcccc-------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEeC
Confidence 2 1100000 01111111233455543 3466788999999999999766554444321110 112222
Q ss_pred ccceEEEEeeCC-ceEEEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCCcccceeeccc--CCCCEEEEEe--cC
Q 001236 440 SGLRTIAVACGV-WHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPAL--IDYNFHKVAC--GH 514 (1117)
Q Consensus 440 ~~~kI~~VacG~-~Ht~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~~~~P~~V~~l--~~~~I~~Ia~--G~ 514 (1117)
.+..|+.+..-. ...++++ +.+|.+--.--.++-.-+.+... ..+..+ .+..++.+.. +.
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~----------T~~G~~Kr~~~~e~~~~~Rg~kG-----~~~~~~~~~~~~lv~~~~v~~~ 258 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTA----------TQNGYGKRTAVAEYPTKSRATKG-----VISIKVTERNGLVVGAVQVDDC 258 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEE----------ETTSEEEEECGGGSCCCCTTSCC-----EESSCCCTTTCSEEEEEEECTT
T ss_pred CCCEEEEEEEecCCCEEEEE----------EcCCceEEEEHHHhccCCCCCCC-----EEeeEecCCCCeEEEEEEeCCC
Confidence 344566554321 2222221 34554433322222111111110 111111 1134444333 56
Q ss_pred cEEEEEecCCeEEEEeCCCCCCCC
Q 001236 515 SLTVGLTTSGHVFTMGSTVYGQLG 538 (1117)
Q Consensus 515 ~htlaLT~dG~Vy~wGsN~~GQLG 538 (1117)
...+++|++|.+.-+-.+.....|
T Consensus 259 ~~l~~~t~~g~~ir~~~~~i~~~~ 282 (307)
T 1zi0_A 259 DQIMMITDAGTLVRTRVSEISIVG 282 (307)
T ss_dssp CEEEEEESSCCEEEEEGGGSCBCC
T ss_pred ceEEEEcCCCcEEEEecccccccC
Confidence 678899999999988766554444
No 394
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=22.46 E-value=6.5e+02 Score=25.89 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=52.5
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecC--CeEEEEEcCCcEEEE
Q 001236 284 DVHHIACGV--RHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGE--FHTCAVTMAGELYTW 359 (1117)
Q Consensus 284 ~I~~Ia~G~--~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~--~hs~aLT~dG~VysW 359 (1117)
.|..|+... ...+.-..+|.|..|-...... ...+.. ....|..++... ...+.-..||.|+.|
T Consensus 67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 134 (312)
T 4ery_A 67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC-----------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 134 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 455565543 3445556789999996443111 011111 122354444432 344455678999999
Q ss_pred cCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecCC--eeEEEccCCcEEEEeC
Q 001236 360 GDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGPW--HTALITSTGQLFTFGD 416 (1117)
Q Consensus 360 G~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~~--HtlaLt~dG~Vy~wG~ 416 (1117)
-... +. ....+. .....|..++.... ..+.-..+|.|..|-.
T Consensus 135 d~~~---~~----------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 135 DVKT---GK----------CLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp ETTT---CC----------EEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ECCC---CE----------EEEEec--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 5431 10 011111 11234666655432 3444467888888864
No 395
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.44 E-value=3.6e+02 Score=30.97 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=39.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHH
Q 001236 825 ITDSLKKTNELLNQEVLKLRAQV--ES----LRQRCEFQELELQKSTKKAQ-----EAMAVAAEESSKAKAAKDVIKSLT 893 (1117)
Q Consensus 825 ~~~~~~~~~~~l~~ev~~l~~qv--~~----l~~~~~~~~~~~~~~~~~~~-----e~~~~a~~e~~~~kaake~ik~lt 893 (1117)
+.+.|+...+-+++.+.+++++. ++ |.||.......++..++|+- -..+++.=|+.|..+-| -|+.|.
T Consensus 371 ~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 449 (471)
T 3mq9_A 371 VDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQK-KVEELE 449 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35667777777777777777653 22 33333333333333333332 22445666777776554 455565
Q ss_pred HHHHHHH
Q 001236 894 AQLKDMA 900 (1117)
Q Consensus 894 ~qlk~~~ 900 (1117)
+|++++-
T Consensus 450 ~~~~~~~ 456 (471)
T 3mq9_A 450 GEITTLN 456 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 396
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=22.39 E-value=4.2e+02 Score=30.89 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 844 RAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 844 ~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
+.|+.++.........+|++.++.++|.+....+.. -+.-+.+|+.|+.++..|..+
T Consensus 134 Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~--i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 134 QKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSS--LRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHhccchhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555566665543222211 122233445555544444443
No 397
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.35 E-value=1.7e+02 Score=27.77 Aligned_cols=46 Identities=9% Similarity=0.110 Sum_probs=39.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 823 KSITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKA 868 (1117)
Q Consensus 823 ~~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~ 868 (1117)
....+-+++.-+.|...+.+|+.++..++.+......+|++..+++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455668888889999999999999999999999999999887764
No 398
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.19 E-value=1.7e+02 Score=29.85 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
+.....=+-|.+.+..|++++..|+++-|.+..|.+++.++++
T Consensus 141 e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 141 EVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455566788888888888888888888888888888776
No 399
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=22.04 E-value=71 Score=33.44 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCcceEEEEeCCHHHHHHHHHHHH
Q 001236 87 DYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLK 120 (1117)
Q Consensus 87 ~~~~FSIiy~~~~rtLDLva~~~~ea~~Wv~GL~ 120 (1117)
...+|.|+-. .|++.|.|.+.+|++.|+..|+
T Consensus 194 ~~~~f~iit~--~r~~~~~a~s~~e~~~Wi~~lq 225 (228)
T 3tfm_A 194 RPNSFVIITA--NRVLHCNADTPEEMHHWITLLQ 225 (228)
T ss_dssp CTTEEEEEET--TEEEEEECSSHHHHHHHHHHHC
T ss_pred CCCcEEEEeC--CceEEEEcCCHHHHHHHHHHHh
Confidence 4568999885 4999999999999999999875
No 400
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=21.96 E-value=76 Score=26.65 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=32.2
Q ss_pred hhhcccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHh
Q 001236 633 AEQLQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFA 691 (1117)
Q Consensus 633 ~d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~ 691 (1117)
.+...|..|+.. ....-|-.|...|+..|-. +++...|...+ .|..|..
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~-----ppl~~~P~g~W-~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLS-----PPLREIPSGTW-RCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSS-----SCCSSCCSSCC-CCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccC-----CCcCcCCCCCe-ECccccC
Confidence 344578888752 2456688898899999943 34433344445 8999965
No 401
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.78 E-value=3.1e+02 Score=24.88 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=31.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 824 SITDSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 824 ~~~~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
++...+..+.+-+..|+..+++.+..|+.+..+...++++-.+.-++
T Consensus 23 ~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 69 (95)
T 3mov_A 23 ACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQ 69 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777776666666655554444
No 402
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.70 E-value=98 Score=27.16 Aligned_cols=26 Identities=8% Similarity=0.270 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCEFQELELQ 862 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~~~~~~~~ 862 (1117)
.+++.+|+++++.|+++.+.++.+|+
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444
No 403
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=21.69 E-value=2.6e+02 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLR----QRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 839 ev~~l~~qv~~l~----~~~~~~~~~~~~~~~~~~ 869 (1117)
++..|++|+..|+ .++...-.|++.++|+++
T Consensus 43 ~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ 77 (197)
T 1dkg_A 43 KVANLEAQLAEAQTRERDGILRVKAEMENLRRRTE 77 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 244444455554444443
No 404
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.45 E-value=1.2e+02 Score=26.64 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 839 EVLKLRAQVESLRQRCEFQELELQKSTKKAQ 869 (1117)
Q Consensus 839 ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~ 869 (1117)
=|..|+.++..|+++.+.+..+.+.+.+++.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666553
No 405
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=21.37 E-value=8.1e+02 Score=26.59 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=34.5
Q ss_pred CceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccC-CCCCeEEEEec--CCeEEEEEcCCcEEEEcCC
Q 001236 292 VRHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESL-TMTSVDFVTCG--EFHTCAVTMAGELYTWGDG 362 (1117)
Q Consensus 292 ~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l-~~~~I~~Va~G--~~hs~aLT~dG~VysWG~n 362 (1117)
....+..+.+|.|+.|-....-. ...+... ....|..++.. ..+.+.-+.||.|.+|-..
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLER-----------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCE-----------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEeCCCCee-----------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45566667889999996433110 1111111 12467777764 3444556788999999543
No 406
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.93 E-value=3.4e+02 Score=22.11 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001236 836 LNQEVLKLRAQVESLRQ 852 (1117)
Q Consensus 836 l~~ev~~l~~qv~~l~~ 852 (1117)
|..=|-.|+-||..|++
T Consensus 8 lVDtVYaLkDqV~eL~q 24 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQ 24 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555554
No 407
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.92 E-value=41 Score=28.54 Aligned_cols=28 Identities=29% Similarity=0.797 Sum_probs=22.3
Q ss_pred hcccccccccccccccccccccCcceeccCC
Q 001236 635 QLQCSACRQAFGFTRKRHNCYNCGLVHCHSC 665 (1117)
Q Consensus 635 ~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~C 665 (1117)
...|..|+...+++ ...| .||..||...
T Consensus 15 ~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccccc--CeEe-ecCCEecccC
Confidence 46789999887765 5679 6999999765
No 408
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.86 E-value=3.9e+02 Score=30.81 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q 001236 850 LRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDMAER 902 (1117)
Q Consensus 850 l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~~~~ 902 (1117)
..++-+++.+|-+++++.++|....-+| |++..|.++.|-.-+|+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 485 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLALAS-------ANATLQELVVREQNLASQ 485 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhhHh-------cccHHHHHHHHHHHHHHh
Confidence 3333344444445555555555444444 444455555555555544
No 409
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.81 E-value=78 Score=28.54 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=33.7
Q ss_pred cccccccccccccccccccccCcceeccCCCCccccccccCCCCCCCeecChhhHhhh
Q 001236 636 LQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDCCFAKL 693 (1117)
Q Consensus 636 s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~CSs~k~l~~~l~~~~~kp~RVC~~C~~~l 693 (1117)
..|..|+..-. ......|-.|...|+..|- .+++...|...+ .|..|....
T Consensus 17 ~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl-----~Ppl~~~P~g~W-~C~~C~~~~ 67 (92)
T 2e6r_A 17 YICQVCSRGDE-DDKLLFCDGCDDNYHIFCL-----LPPLPEIPRGIW-RCPKCILAE 67 (92)
T ss_dssp CCCSSSCCSGG-GGGCEECTTTCCEECSSSS-----SSCCSSCCSSCC-CCHHHHHHH
T ss_pred CCCccCCCcCC-CCCEEEcCCCCchhccccC-----CCCcccCCCCCc-CCccCcCcc
Confidence 46788875432 2345678899999999994 344444444555 899997653
No 410
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=20.67 E-value=3.2e+02 Score=25.95 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001236 829 LKKTNELLNQEVLKLRAQVESLRQRCEFQ----ELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTAQLKDM 899 (1117)
Q Consensus 829 ~~~~~~~l~~ev~~l~~qv~~l~~~~~~~----~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~qlk~~ 899 (1117)
|.+...-|..+|..|+.+++.|++-.... +.+|+.+-+|=.+|--.|++ |+..++-.+...|
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aae---------eLf~~~~~rv~rM 70 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAE---------VLFKPMAERIRLA 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhc
Confidence 44555667888999999888888765443 35677776666665555444 5555555444443
No 411
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=20.64 E-value=6.8e+02 Score=25.42 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=36.2
Q ss_pred CEEEEEecC--ceEEEEEcCCcEEEEeCCCCCccCCCCCCceeccEEeccCCCCCeEEEEecCCeEEEEEcCCcEEEEcC
Q 001236 284 DVHHIACGV--RHAALVTRQGEVFTWGEESGGRLGHGVGKDIVQPHLLESLTMTSVDFVTCGEFHTCAVTMAGELYTWGD 361 (1117)
Q Consensus 284 ~I~~Ia~G~--~Hs~~LT~dG~VyswG~N~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~ 361 (1117)
.|..|+... .+.+.-..||.|..|-......+ ..+.. ....+..++......+.-..+|.+..|-.
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~-----------~~~~~-h~~~~~~~~~~~~~l~s~~~~~~~~~~~~ 136 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-----------RNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDV 136 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----------EEEEC-CSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCceeE-----------EEecC-ccceEEEeecCCCEEEEEecCCceEeeec
Confidence 355665543 34444567899999954331110 11111 12345556665566666677777777754
Q ss_pred C
Q 001236 362 G 362 (1117)
Q Consensus 362 n 362 (1117)
.
T Consensus 137 ~ 137 (318)
T 4ggc_A 137 R 137 (318)
T ss_dssp T
T ss_pred C
Confidence 4
No 412
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.57 E-value=88 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 838 QEVLKLRAQVESLRQRCEFQELELQKSTKKAQE 870 (1117)
Q Consensus 838 ~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e 870 (1117)
..|..|-.+-+.|+.+++...+-.+|++.+++|
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555544444444455555444
No 413
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=20.57 E-value=1.5e+02 Score=33.18 Aligned_cols=37 Identities=8% Similarity=0.284 Sum_probs=29.8
Q ss_pred ceEEEEEcC------CcceEEEEeCCHHHHHHHHHHHHHHHHc
Q 001236 89 LSFSLIYNN------GKRSLDLICKDKVEAEVWIAGLKALISS 125 (1117)
Q Consensus 89 ~~FSIiy~~------~~rtLDLva~~~~ea~~Wv~GL~~Li~~ 125 (1117)
..|-|++.. ..+++-|.|++++|.+.|+..|+.+|..
T Consensus 325 ~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~ 367 (377)
T 1foe_A 325 AVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRD 367 (377)
T ss_dssp CEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhH
Confidence 457777532 2578999999999999999999998844
No 414
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.43 E-value=2.3e+02 Score=22.70 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLR 851 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~ 851 (1117)
+.||+-|..|.+|++.=-+|+..|+
T Consensus 13 e~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 13 EALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 3444444444444444444444433
No 415
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=20.37 E-value=2.7e+02 Score=29.37 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH------HHHH
Q 001236 828 SLKKTNELLNQEVLKL---RAQVESLRQRCEFQELELQKSTKKAQEAMAVAAEESSKAKAAKDVIKSLTA------QLKD 898 (1117)
Q Consensus 828 ~~~~~~~~l~~ev~~l---~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~~a~~e~~~~kaake~ik~lt~------qlk~ 898 (1117)
..+.-...|.+|+.+| ..=++...+++...+..|....+.+++....+..|++.-| ..+|...|.+ +|-+
T Consensus 108 ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~a~k~-~e~ie~dL~~~e~~i~~l~~ 186 (235)
T 2odv_A 108 AILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQR-AGEVERDLDKADSMIRLLFN 186 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888765 3355788888999998888888888655555555554322 4444444443 5556
Q ss_pred HHhcCCCCC
Q 001236 899 MAERLPPGV 907 (1117)
Q Consensus 899 ~~~~~~~~~ 907 (1117)
+++.|-.+.
T Consensus 187 ~a~~L~~~~ 195 (235)
T 2odv_A 187 DVQTLKDGR 195 (235)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 666664443
No 416
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.36 E-value=1.4e+02 Score=20.20 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRC 854 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~ 854 (1117)
-|..|+..||+.++.|+.|.
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777776664
No 417
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=20.35 E-value=6.7e+02 Score=25.24 Aligned_cols=16 Identities=0% Similarity=0.044 Sum_probs=10.2
Q ss_pred EEEEEecCCeEEEEeC
Q 001236 516 LTVGLTTSGHVFTMGS 531 (1117)
Q Consensus 516 htlaLT~dG~Vy~wGs 531 (1117)
+.++++.+|.+|....
T Consensus 186 ~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 186 VGITKGNDDALWFVEI 201 (299)
T ss_dssp EEEEECTTSSEEEEET
T ss_pred eeEEECCCCCEEEEcc
Confidence 3566667777776553
No 418
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=20.26 E-value=1.7e+02 Score=24.53 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 834 ELLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEAMA 873 (1117)
Q Consensus 834 ~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~~~ 873 (1117)
+-|.++|.++|.+.-.|..+.-..+.++-++.|++++-+.
T Consensus 4 ~~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn 43 (62)
T 2bzb_A 4 GQLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLIN 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5688999999999999999988888888888888887543
No 419
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.17 E-value=3.9e+02 Score=27.86 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------HHHHHH---HHhhhhhHHHHHHHHHHH
Q 001236 827 DSLKKTNELLNQEVLKLRAQVESLRQRCEFQELELQKSTK-KAQEA-------MAVAAE---ESSKAKAAKDVIKSLTAQ 895 (1117)
Q Consensus 827 ~~~~~~~~~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~-~~~e~-------~~~a~~---e~~~~kaake~ik~lt~q 895 (1117)
+.|++-.+-|.....+|+|+.++++++.+..-.++.++.. ++=.. +..|.+ +....++-++-|+.+-.|
T Consensus 69 ~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~ 148 (213)
T 4ani_A 69 AELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRS 148 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 3444445555677788888888888887665555554322 22122 222332 112233445566677778
Q ss_pred HHHHHhcCCC
Q 001236 896 LKDMAERLPP 905 (1117)
Q Consensus 896 lk~~~~~~~~ 905 (1117)
|..+-++.-.
T Consensus 149 l~~~L~k~Gv 158 (213)
T 4ani_A 149 LVDALKKEGV 158 (213)
T ss_dssp HHHHHHHTTE
T ss_pred HHHHHHHCCC
Confidence 8888887643
No 420
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.12 E-value=43 Score=28.37 Aligned_cols=29 Identities=34% Similarity=0.876 Sum_probs=22.6
Q ss_pred hhcccccccccccccccccccccCcceeccCC
Q 001236 634 EQLQCSACRQAFGFTRKRHNCYNCGLVHCHSC 665 (1117)
Q Consensus 634 d~s~Cs~C~~~F~f~rkrh~C~~CG~v~C~~C 665 (1117)
....|..|+...+++ ...| .||..||...
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMC-RCGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEEC-SSSCEECTTT
T ss_pred cCCcChhhCCccCcc--CEEe-ecCCEecccc
Confidence 346789999887776 5679 5999999765
No 421
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=20.10 E-value=2.1e+02 Score=27.74 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001236 837 NQEVLKLRAQVESLRQRCE 855 (1117)
Q Consensus 837 ~~ev~~l~~qv~~l~~~~~ 855 (1117)
.+||.+||.+++.-+++.+
T Consensus 5 ~~Ele~lr~aL~~AE~eLe 23 (136)
T 3ter_A 5 HTEMENLRVQLEEAERRLE 23 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777776665555443
No 422
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.02 E-value=1.9e+02 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001236 835 LLNQEVLKLRAQVESLRQRCEFQELELQKSTKKAQEA 871 (1117)
Q Consensus 835 ~l~~ev~~l~~qv~~l~~~~~~~~~~~~~~~~~~~e~ 871 (1117)
.|.+|++++++.+..|..+|+....|-+++.-++.-+
T Consensus 47 ~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~t 83 (123)
T 4aj5_K 47 TLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICAT 83 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998888877666655543
No 423
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=20.00 E-value=7.4e+02 Score=25.59 Aligned_cols=206 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred CEEEE--------EecCceEEEEEcCCcEEEEeCCCCCccCCCCCC-ceeccEEeccCCCCCeEEEE------ecCCeEE
Q 001236 284 DVHHI--------ACGVRHAALVTRQGEVFTWGEESGGRLGHGVGK-DIVQPHLLESLTMTSVDFVT------CGEFHTC 348 (1117)
Q Consensus 284 ~I~~I--------a~G~~Hs~~LT~dG~VyswG~N~~GQLG~g~~~-~~~~P~~V~~l~~~~I~~Va------~G~~hs~ 348 (1117)
.|..+ +....+.+....+|.|+.|-... .. ...............|..++ ....+.+
T Consensus 113 ~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 184 (357)
T 3i2n_A 113 IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ--------KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVC 184 (357)
T ss_dssp CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS--------CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEE
T ss_pred ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC--------CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEE
Q ss_pred EEEcCCcEEEEcCCCCCCCccCCCCCcceeeeeeecCCCCCCcEEEEEecC-----CeeEEEccCCcEEEEeCCCCCCcC
Q 001236 349 AVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQVASVTCGP-----WHTALITSTGQLFTFGDGTFGVLG 423 (1117)
Q Consensus 349 aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~V~~~l~~~~Iv~Va~G~-----~HtlaLt~dG~Vy~wG~N~~GQLG 423 (1117)
+-..+|.|+.|-.. ....+........|..++... ...++-..+|.|+.|-....
T Consensus 185 ~~~~d~~i~i~d~~----------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---- 244 (357)
T 3i2n_A 185 AGYDNGDIKLFDLR----------------NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ---- 244 (357)
T ss_dssp EEETTSEEEEEETT----------------TTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE----
T ss_pred EEccCCeEEEEECc----------------cCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC----
Q ss_pred CCCCCCcccceeecccccceEEEEeeCCceE-EEEEEeeecccccccCCceEEEecCCCCCCCCCCCCCC-------ccc
Q 001236 424 HGDRKNVSYPREVESLSGLRTIAVACGVWHT-AAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEP-------RLK 495 (1117)
Q Consensus 424 ~g~~~~~~~P~~V~~l~~~kI~~VacG~~Ht-~aL~e~~~~~~~~~t~~G~Ly~WG~n~~GQLG~g~~~~-------~~~ 495 (1117)
......+..........|..++...... ++++- ..+|.|+.|-.......-..+... ...
T Consensus 245 ---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~ 312 (357)
T 3i2n_A 245 ---HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA---------GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVS 312 (357)
T ss_dssp ---ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE---------ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEE
T ss_pred ---CcccceeeeccCCCcCCEEEEEECCCCCcEEEEE---------eCCCcEEEeecCCCcccccccCCCCccccccccc
Q ss_pred ceeecccCCCCEEEEEe---cCcEEEEEecCCeEEEE
Q 001236 496 PTCVPALIDYNFHKVAC---GHSLTVGLTTSGHVFTM 529 (1117)
Q Consensus 496 P~~V~~l~~~~I~~Ia~---G~~htlaLT~dG~Vy~w 529 (1117)
+..........|..++. |....+.-..+|.|+.|
T Consensus 313 ~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw 349 (357)
T 3i2n_A 313 LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVL 349 (357)
T ss_dssp EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEE
Done!