BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001237
         (1117 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R79|A Chain A, Crystal Structure Of A Periplasmic Heme Binding Protein
           From Pseudomonas Aeruginosa
          Length = 283

 Score = 31.2 bits (69), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 227 PSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDT 283
           P+  A+D RL +L     +GG    L + L  +S ++ P+ +    E A P+L  D+
Sbjct: 223 PTRAARDGRLLVLDPTLLVGGLGPRLPDGLAALSAAFYPSAKPLSTEAAHPLLGDDS 279


>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
            Fragment
 pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
            Fragment
          Length = 475

 Score = 30.0 bits (66), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1041 ESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVF 1088
            E+L ++L     R + +TF R++RV   +L E G  ++D+V +  G F
Sbjct: 93   ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHAMGTF 140


>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
 pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
          Length = 484

 Score = 30.0 bits (66), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1041 ESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVF 1088
            E+L ++L     R + +TF R++RV   +L E G  ++D+V +  G F
Sbjct: 93   ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTF 140


>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
          Length = 479

 Score = 30.0 bits (66), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1041 ESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVF 1088
            E+L ++L     R + +TF R++RV   +L E G  ++D+V +  G F
Sbjct: 93   ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTF 140


>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
 pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
          Length = 475

 Score = 30.0 bits (66), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 1041 ESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVF 1088
            E+L ++L     R + +TF R++RV   +L E G  ++D+V +  G F
Sbjct: 93   ETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTF 140


>pdb|1V5E|A Chain A, Crystal Structure Of Pyruvate Oxidase Containing Fad, From
           Aerococcus Viridans
 pdb|2DJI|A Chain A, Crystal Structure Of Pyruvate Oxidase From Aerococcus
           Viridans Containing Fad
          Length = 590

 Score = 29.6 bits (65), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 40  SKYPLKVKCAVVGNGLFTQTSPEVRRIVPENRDNLPTVKIV-----YVVLEAQYQSALSA 94
           + YP +    ++G+G F+ T P+V   V   R N+P + +V     Y  ++ +Y+     
Sbjct: 427 NTYPDRQVWNIIGDGAFSMTYPDV---VTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN 483

Query: 95  AVQALNQQVNYA----SYEVVGYLVEELRDVD 122
                   V+YA    +    G+ V  + D+D
Sbjct: 484 LFGVDFTDVDYAKIAEAQGAKGFTVSRIEDMD 515


>pdb|1V5F|A Chain A, Crystal Structure Of Pyruvate Oxidase Complexed With Fad
           And Tpp, From Aerococcus Viridans
 pdb|1V5G|A Chain A, Crystal Structure Of The Reaction Intermediate Between
           Pyruvate Oxidase Containing Fad And Tpp, And Substrate
           Pyruvate
          Length = 589

 Score = 29.6 bits (65), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 12/92 (13%)

Query: 40  SKYPLKVKCAVVGNGLFTQTSPEVRRIVPENRDNLPTVKIV-----YVVLEAQYQSALSA 94
           + YP +    ++G+G F+ T P+V   V   R N+P + +V     Y  ++ +Y+     
Sbjct: 426 NTYPDRQVWNIIGDGAFSMTYPDV---VTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKN 482

Query: 95  AVQALNQQVNYA----SYEVVGYLVEELRDVD 122
                   V+YA    +    G+ V  + D+D
Sbjct: 483 LFGVDFTDVDYAKIAEAQGAKGFTVSRIEDMD 514


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,708,510
Number of Sequences: 62578
Number of extensions: 1487754
Number of successful extensions: 3422
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3417
Number of HSP's gapped (non-prelim): 20
length of query: 1117
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1008
effective length of database: 8,152,335
effective search space: 8217553680
effective search space used: 8217553680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)