Query 001237
Match_columns 1117
No_of_seqs 276 out of 821
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 19:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03069 magnesiumprotoporphyr 100.0 4E-281 8E-286 2614.1 106.3 1062 55-1116 1-1070(1220)
2 PRK12493 magnesium chelatase s 100.0 2E-271 5E-276 2536.6 102.9 1043 63-1116 1-1055(1310)
3 TIGR02025 BchH magnesium chela 100.0 3E-264 6E-269 2451.2 96.7 949 77-1116 1-963 (1216)
4 PRK13405 bchH magnesium chelat 100.0 1E-259 3E-264 2403.4 91.9 920 55-1116 1-954 (1209)
5 PLN03241 magnesium chelatase s 100.0 5E-232 1E-236 2169.1 87.7 929 66-1116 58-1086(1353)
6 PRK05989 cobN cobaltochelatase 100.0 2E-223 3E-228 2095.7 91.4 922 74-1116 22-988 (1244)
7 PF02514 CobN-Mg_chel: CobN/Ma 100.0 2E-223 5E-228 2079.7 81.3 820 241-1116 2-855 (1098)
8 TIGR02257 cobalto_cobN cobalto 100.0 9E-217 2E-221 2005.5 81.3 822 74-1116 22-882 (1122)
9 PRK12321 cobN cobaltochelatase 100.0 3E-214 6E-219 1980.5 80.4 810 73-1114 21-866 (1100)
10 COG1429 CobN Cobalamin biosynt 100.0 5E-208 1E-212 1961.5 79.3 945 69-1117 15-991 (1388)
11 PF11965 DUF3479: Domain of un 100.0 7.8E-36 1.7E-40 304.1 15.2 157 77-238 1-164 (164)
12 PRK02842 light-independent pro 73.7 30 0.00064 41.8 12.2 87 338-435 115-212 (427)
13 cd01972 Nitrogenase_VnfE_like 69.2 47 0.001 40.0 12.5 94 338-433 107-212 (426)
14 PRK14478 nitrogenase molybdenu 66.1 51 0.0011 40.4 12.1 105 321-432 122-236 (475)
15 cd01976 Nitrogenase_MoFe_alpha 65.3 59 0.0013 39.3 12.2 91 338-433 117-218 (421)
16 PRK02929 L-arabinose isomerase 62.1 68 0.0015 39.7 12.1 178 335-553 27-218 (499)
17 cd01971 Nitrogenase_VnfN_like 61.9 82 0.0018 38.0 12.7 107 321-432 89-205 (427)
18 cd03557 L-arabinose_isomerase 60.7 54 0.0012 40.4 10.8 181 337-553 23-212 (484)
19 TIGR01862 N2-ase-Ialpha nitrog 60.4 77 0.0017 38.5 12.1 91 337-433 135-237 (443)
20 TIGR01205 D_ala_D_alaTIGR D-al 59.7 31 0.00067 39.3 8.2 91 321-418 1-95 (315)
21 cd01967 Nitrogenase_MoFe_alpha 58.8 94 0.002 37.0 12.4 91 338-433 105-206 (406)
22 cd03466 Nitrogenase_NifN_2 Nit 56.8 58 0.0013 39.3 10.2 103 321-433 87-219 (429)
23 PF03358 FMN_red: NADPH-depend 56.7 25 0.00054 35.5 6.1 60 77-139 1-76 (152)
24 cd01965 Nitrogenase_MoFe_beta_ 55.2 1.3E+02 0.0029 36.2 12.9 105 321-433 84-220 (428)
25 cd01968 Nitrogenase_NifE_I Nit 53.9 1.2E+02 0.0025 36.5 12.0 89 338-432 104-203 (410)
26 TIGR01282 nifD nitrogenase mol 52.9 1.2E+02 0.0025 37.3 12.0 90 338-433 150-253 (466)
27 TIGR01285 nifN nitrogenase mol 52.3 1.2E+02 0.0025 37.0 11.7 75 338-416 109-198 (432)
28 PF06792 UPF0261: Uncharacteri 50.2 63 0.0014 38.9 8.7 152 317-503 183-339 (403)
29 PF01726 LexA_DNA_bind: LexA D 48.0 5.8 0.00013 35.4 -0.1 35 504-538 22-56 (65)
30 cd01966 Nitrogenase_NifN_1 Nit 47.7 1.4E+02 0.0031 36.0 11.4 76 338-417 99-189 (417)
31 PRK14476 nitrogenase molybdenu 43.0 1.6E+02 0.0034 36.1 11.0 90 321-416 95-199 (455)
32 TIGR01860 VNFD nitrogenase van 41.2 2.6E+02 0.0056 34.3 12.4 91 337-432 144-246 (461)
33 PRK14477 bifunctional nitrogen 40.6 1.7E+02 0.0037 39.1 11.5 90 338-433 130-230 (917)
34 TIGR01283 nifE nitrogenase mol 40.6 2.4E+02 0.0052 34.4 12.0 89 338-432 139-242 (456)
35 cd01974 Nitrogenase_MoFe_beta 39.7 2.6E+02 0.0055 34.0 12.0 90 321-417 88-192 (435)
36 cd00532 MGS-like MGS-like doma 36.6 1.5E+02 0.0032 29.0 7.7 70 345-419 37-106 (112)
37 TIGR01861 ANFD nitrogenase iro 35.8 4.1E+02 0.0088 33.2 13.0 92 337-433 145-248 (513)
38 PRK02399 hypothetical protein; 35.7 87 0.0019 37.7 6.9 91 316-418 183-277 (406)
39 PF03808 Glyco_tran_WecB: Glyc 35.6 1.3E+02 0.0029 31.6 7.7 60 78-143 50-111 (172)
40 cd01541 PBP1_AraR Ligand-bindi 34.6 1.3E+02 0.0029 32.7 8.0 84 321-418 1-89 (273)
41 COG0300 DltE Short-chain dehyd 34.6 79 0.0017 36.0 6.1 64 335-399 39-103 (265)
42 cd00578 L-fuc_L-ara-isomerases 34.3 3.3E+02 0.0071 33.1 11.9 152 321-505 2-169 (452)
43 PRK14569 D-alanyl-alanine synt 33.4 1.1E+02 0.0025 34.8 7.3 86 319-419 3-89 (296)
44 cd07409 MPP_CD73_N CD73 ecto-5 32.8 4.2E+02 0.0092 30.0 11.8 44 496-539 139-185 (281)
45 cd05296 GH4_P_beta_glucosidase 30.9 1.2E+02 0.0025 36.9 7.1 83 47-143 2-85 (419)
46 TIGR00640 acid_CoA_mut_C methy 30.9 1.3E+02 0.0028 30.6 6.4 75 293-387 38-112 (132)
47 PRK14571 D-alanyl-alanine synt 30.9 1.3E+02 0.0029 34.1 7.4 83 321-418 2-85 (299)
48 PRK01372 ddl D-alanine--D-alan 30.7 1.5E+02 0.0033 33.5 7.8 82 321-418 6-88 (304)
49 cd01973 Nitrogenase_VFe_beta_l 30.4 3E+02 0.0065 33.7 10.6 73 338-418 105-194 (454)
50 cd01575 PBP1_GntR Ligand-bindi 29.9 1.8E+02 0.004 31.3 8.0 84 321-418 1-84 (268)
51 cd07062 Peptidase_S66_mccF_lik 29.6 1.5E+02 0.0032 34.3 7.5 64 321-389 2-75 (308)
52 PF04459 DUF512: Protein of un 29.5 89 0.0019 34.2 5.3 97 52-175 75-171 (204)
53 cd06295 PBP1_CelR Ligand bindi 29.4 1.7E+02 0.0037 31.9 7.6 84 320-418 4-93 (275)
54 PF10093 DUF2331: Uncharacteri 28.6 1E+03 0.022 28.7 14.1 216 333-581 11-261 (374)
55 PF02610 Arabinose_Isome: L-ar 28.5 1.1E+02 0.0025 36.2 6.2 149 337-507 29-186 (359)
56 PHA02114 hypothetical protein 28.1 62 0.0013 31.4 3.3 49 287-355 66-114 (127)
57 PRK08057 cobalt-precorrin-6x r 27.9 93 0.002 35.0 5.3 75 335-420 10-100 (248)
58 PRK14477 bifunctional nitrogen 26.8 4E+02 0.0086 35.8 11.5 88 321-417 574-676 (917)
59 cd06281 PBP1_LacI_like_5 Ligan 26.7 2.3E+02 0.0049 30.9 8.0 83 321-419 1-86 (269)
60 KOG3923 D-aspartate oxidase [A 26.5 37 0.0008 39.2 1.8 55 1031-1089 141-195 (342)
61 PF01866 Diphthamide_syn: Puta 26.2 1.5E+02 0.0032 34.3 6.7 82 317-419 207-288 (307)
62 TIGR00696 wecB_tagA_cpsF bacte 26.1 2.2E+02 0.0049 30.4 7.5 61 77-144 49-111 (177)
63 cd01977 Nitrogenase_VFe_alpha 25.8 3.9E+02 0.0085 32.1 10.4 106 321-433 91-208 (415)
64 TIGR02932 vnfK_nitrog V-contai 25.7 3.7E+02 0.0081 33.0 10.3 74 338-418 108-198 (457)
65 cd06533 Glyco_transf_WecG_TagA 25.6 2.2E+02 0.0048 29.9 7.4 61 77-143 47-109 (171)
66 TIGR02931 anfK_nitrog Fe-only 25.6 4.3E+02 0.0094 32.4 10.8 88 321-418 96-201 (461)
67 PF13271 DUF4062: Domain of un 25.6 1.2E+02 0.0025 28.1 4.7 22 118-139 37-58 (83)
68 PRK14568 vanB D-alanine--D-lac 25.1 1.5E+02 0.0033 34.5 6.6 92 319-418 3-122 (343)
69 PF02219 MTHFR: Methylenetetra 24.9 2.6E+02 0.0057 31.8 8.3 82 97-178 131-220 (287)
70 TIGR02690 resist_ArsH arsenica 23.9 2.2E+02 0.0048 31.6 7.2 79 60-139 11-96 (219)
71 cd03817 GT1_UGDG_like This fam 23.9 67 0.0014 35.7 3.3 35 498-540 1-35 (374)
72 TIGR00306 apgM 2,3-bisphosphog 23.8 1E+02 0.0022 37.2 4.8 115 967-1097 150-279 (396)
73 cd08170 GlyDH Glycerol dehydro 23.7 1.8E+02 0.004 34.0 6.9 91 324-429 26-117 (351)
74 PF00670 AdoHcyase_NAD: S-aden 23.6 44 0.00096 35.3 1.6 77 1002-1087 5-88 (162)
75 cd06273 PBP1_GntR_like_1 This 23.5 2.6E+02 0.0056 30.2 7.7 81 321-418 1-84 (268)
76 COG2984 ABC-type uncharacteriz 23.2 1E+03 0.022 28.2 12.3 159 316-539 27-191 (322)
77 PRK10569 NAD(P)H-dependent FMN 22.6 1.7E+02 0.0036 31.6 5.8 12 77-88 1-12 (191)
78 PF01820 Dala_Dala_lig_N: D-al 22.5 2.5E+02 0.0054 27.7 6.6 85 321-416 2-115 (117)
79 TIGR00272 DPH2 diphthamide bio 22.4 69 0.0015 39.7 3.2 25 656-698 106-130 (496)
80 cd04955 GT1_like_6 This family 22.1 70 0.0015 36.0 3.0 35 498-540 1-36 (363)
81 PF13329 ATG2_CAD: Autophagy-r 22.0 1.2E+02 0.0027 31.7 4.5 64 1047-1110 84-151 (157)
82 PF01866 Diphthamide_syn: Puta 22.0 59 0.0013 37.6 2.4 51 615-702 23-74 (307)
83 PF07057 TraI: DNA helicase Tr 22.0 53 0.0011 33.3 1.7 18 1054-1071 97-114 (126)
84 PRK10307 putative glycosyl tra 21.6 88 0.0019 36.8 3.8 36 497-540 1-36 (412)
85 cd00316 Oxidoreductase_nitroge 20.9 2.6E+02 0.0056 33.0 7.5 93 318-432 151-244 (399)
86 PF04028 DUF374: Domain of unk 20.6 73 0.0016 29.4 2.2 22 1038-1059 20-41 (74)
87 PRK05234 mgsA methylglyoxal sy 20.6 7.7E+02 0.017 25.4 9.9 39 380-419 75-113 (142)
88 TIGR00322 diphth2_R diphthamid 20.2 81 0.0018 37.0 3.0 26 656-698 71-96 (332)
89 cd00316 Oxidoreductase_nitroge 20.1 3.5E+02 0.0075 31.9 8.4 108 320-433 82-199 (399)
90 TIGR02069 cyanophycinase cyano 20.1 1.4E+02 0.0031 33.5 4.9 86 49-140 2-89 (250)
91 PF14044 NETI: NETI protein 20.1 63 0.0014 28.4 1.6 17 523-539 8-24 (57)
92 TIGR01278 DPOR_BchB light-inde 20.1 2.4E+02 0.0051 35.1 7.2 109 321-432 88-207 (511)
93 TIGR00628 ung uracil-DNA glyco 20.1 1.1E+02 0.0023 33.9 3.7 62 487-552 43-111 (212)
No 1
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=100.00 E-value=3.7e-281 Score=2614.07 Aligned_cols=1062 Identities=85% Similarity=1.315 Sum_probs=985.0
Q ss_pred ceeecCccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcC
Q 001237 55 LFTQTSPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENA 134 (1117)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 134 (1117)
|||+++++.||++|+..+||..||||+||+++|+++++++|++.|+++++++.++||+|+++++++++.+++|++||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~a 80 (1220)
T PLN03069 1 LFTQTNPEVRRIVPEDRRGRPTVKVVYVVLEAQYQSSLSAAVQNLNATSRKVCFEVVGYLVEELRDADNYETFKKDVEDA 80 (1220)
T ss_pred CCCcccccccccCccccCCcceEEEEEEEchHHhHHHHHHHHHHhhhcCCCceEEEEEeehhhccCchhHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccHHHHHHHHHHHHHhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhhcC-CCcHHHHH
Q 001237 135 NIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQG-AGFADSML 213 (1117)
Q Consensus 135 di~~~sllf~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 213 (1117)
||||+||||++|+++|+.++|++++++||++|||+|+||+|++||||+|+|++++++++.+++++||.+.. .+++++|+
T Consensus 81 d~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~s~~e~~~ltr~G~f~m~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 160 (1220)
T PLN03069 81 NIFIGSLIFVEELAEKVKEAVEPERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSAFAQFMKKKKQENGGFEEGML 160 (1220)
T ss_pred CEEEEecccchhhHHHHHHHHHHhhcCCCeEEEEechHHHHHHhcccceecccccCCCcchhHHHHhhhhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999998778888889999996422 23678999
Q ss_pred HHHHhCCCeEEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCC
Q 001237 214 KLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCM 293 (1117)
Q Consensus 214 ~~~~~~~~~l~~lpg~~~~d~~~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~ 293 (1117)
+++|++||+|+||||+|+||+|+|+.+++||.+||.||++|||+||+++|++++.+..++++||+++|+.|||||+++.+
T Consensus 161 ~~~~~~~k~l~~iP~~~~~D~r~~~~~~~Y~~~Gg~eN~~n~l~~l~~~y~~~~~~~~~~~~~P~~~P~~GiyHPd~~~~ 240 (1220)
T PLN03069 161 KLVRTLPKVLKYLPSDKAQDARNFMMSLQFWLGGSPDNLENFLLMISGSYVPALKGVKIEYADPVLFLDTGIWHPLAPTM 240 (1220)
T ss_pred HHHHhhhhceeecCCCchhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhccCCCCCCCchhccccEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999999999855445457889999999999999999999
Q ss_pred cCCHHHHHHHhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhcc
Q 001237 294 YDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVD 373 (1117)
Q Consensus 294 f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~ 373 (1117)
|+++++|++||+++.+...+.+++++|||||||||+|+++||++|+|+||++||++|+||+|||++|++++.++++||++
T Consensus 241 f~~~~~yl~w~~~~~~~~~~~y~~~~p~Vgil~~r~~~~~~~~~~idalI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~ 320 (1220)
T PLN03069 241 YEDVKEYLNWYDTRRDMNFALKDKDAPVVGLVLQRSHIVTGDDGHYVAVVMELEARGAKVVPIFAGGLDFSGPVERFFYD 320 (1220)
T ss_pred cCCHHHHHHHHhhcccccccccCCCCCEEEEEechhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccccchHHHHHHh
Confidence 99999999999765332222355779999999999999999999999999999999999999999999988899999875
Q ss_pred ccCCCcceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcc
Q 001237 374 PVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGG 453 (1117)
Q Consensus 374 ~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~ 453 (1117)
...+++.||+|||+|||+|+|||++++.++++++|++|||||||++++++||.++|++|++||+|+|++|+|+||||||+
T Consensus 321 ~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~e~W~~s~~Gl~p~~~~~~ValPElDG~ 400 (1220)
T PLN03069 321 PITKKPIVDSVVSLTGFALVGGPARQDHPKAIEALKKLDVPYLVALPLVFQTTEEWLDSTLGLHPIQVALQVALPELDGG 400 (1220)
T ss_pred hhcCCCCccEEEECCcccccCCcccccchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCCCHHHhhheeechhhCCc
Confidence 33578899999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEeecCCCCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHH
Q 001237 454 LEPIVFAGRDPRTGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQ 533 (1117)
Q Consensus 454 I~piv~~~~~~~~~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk 533 (1117)
|+|++|||++..++.++|+||||+++|+|+++|++||+|||+||||||||||||||++|+|||+|||||+||++||++||
T Consensus 401 I~piv~~g~~~~~~~~~pi~eRie~la~r~~~w~~Lr~k~n~eKKVAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk 480 (1220)
T PLN03069 401 LEPIVFAGRDSRTGKSHALHDRVEQLCTRAIKWANLKRKTKAEKKLAITVFSFPPDKGNVGTAAYLNVFGSIFSVLKDLK 480 (1220)
T ss_pred eeeEEEEEEecCCCceecCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCccccccccChHHHHHHHHHHHH
Confidence 99999999987778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHhccccccCCCCcccccccCHHHHhhhhHHHHHHHHHhCCCCCCCCCCCCeEEEeeeeec
Q 001237 534 RDGYNVEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEENWGKPPGNLNSDGENLLVYGKQYG 613 (1117)
Q Consensus 534 ~~GY~v~~~P~~~~~L~~~ll~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~pPG~~~~~g~~~~I~G~~fG 613 (1117)
++||+|+++|+|+++|+++|++++...|.+.+.+++..+|+++|++|++++++|+++||+|||+++++|++|+|||++||
T Consensus 481 ~~GY~v~~lP~~~~~L~~~l~~~~~~~~~~~~~~~~~~v~~~~Y~~~~~~~~~i~~~WG~~pG~~~~~g~~~~I~G~~fG 560 (1220)
T PLN03069 481 RDGYNVGGLPETEEALIESVLHDKEAKFSSPNLNVAYKMSVREYQKLTPYAEALEENWGKPPGNLNSDGQNLLVYGKQYG 560 (1220)
T ss_pred HCCCCcCCCCCCHHHHHHHHHhccccCcCCcccccccccCHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeEEEeeeeeC
Confidence 99999999999999999999998777887776677788999999999999999999999999999999988999999999
Q ss_pred cEEEEeCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCC
Q 001237 614 NVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIP 693 (1117)
Q Consensus 614 NVfIgvQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlP 693 (1117)
||||||||+|||++|||++|||+++||||||+|||+||+++|+||||||||||||||||||||+|||++||||+|||+||
T Consensus 561 NVfIgvQP~rG~~~dp~~lyhd~~~pP~HqYlAfY~WL~~~F~ADAviH~GtHGtlEwLPGK~vGLS~~cwPd~liGdlP 640 (1220)
T PLN03069 561 NVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFLEKIFKADAVLHFGTHGSLEFMPGKQVGMSDACYPDSLIGNIP 640 (1220)
T ss_pred CEEEEcCCCCccCCCchhhhcCCCCCCChhHHHHHHHHHhhcCCCEEEEcCCCCCcccCCCccccCCcccChHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccC
Q 001237 694 NVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDV 773 (1117)
Q Consensus 694 niYpYivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~e~a~~~~L~~dl 773 (1117)
|||||||||||||+||||||||||||||||||++||||++|++|+++|++|+++.++.++..+++.|+++|+++||+.|+
T Consensus 641 niY~Y~vnNPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~~~~~~~l~~~I~~~a~~l~L~~dl 720 (1220)
T PLN03069 641 NVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDSGRGPQIVSSIISTAKQCNLDKDV 720 (1220)
T ss_pred EEeEEeCCCcchHHHHHhcccceeeecCCCCcccccccHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHcCCchhc
Confidence 99999999999999999999999999999999999999999999999999999888878889999999999999999999
Q ss_pred CCCcccccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q 001237 774 ELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRD 853 (1117)
Q Consensus 774 ~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~~~~~sL~~~la~~~g~d 853 (1117)
+++.....++.+++++++++||+||||||+++||+||||||++|++|++++++.+|++++|++.++.||++++++.+|++
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~l~~yL~el~~~~Ip~GLHv~G~~p~~e~l~~~l~~i~~~~~~~~~~~sl~~~l~~~~g~d 800 (1220)
T PLN03069 721 DLPEEAAELSADERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSAEEAVATLVNIAALDRPEDNISGLPGILAEAVGRE 800 (1220)
T ss_pred CCCccccccccccHHHHHHHHHHHHHHHHhhhcCCCCeecCCCCChHHHHHHHHHHHhcccccccccchHHHHHHhhccc
Confidence 87654444555678999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhcccccccccHHHH
Q 001237 854 IEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATL 933 (1117)
Q Consensus 854 ~~~l~~~~~~~~~~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 933 (1117)
+++++.+...+..+..++++++.+.++++|+.+++......++..+..+.++..++.+...++...+..........+.+
T Consensus 801 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1220)
T PLN03069 801 IEDVYRGNDKGILADVELLQEITEASRAAVRAFVEKTTNSKGQVVNVANKLTSLLGFGVKEPWVEALSNTKFYDADREKL 880 (1220)
T ss_pred hhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhhhhhccccchhhhhhhhcccccccchHHH
Confidence 99999888777777888889999999999999998776666665544444444443222222322222111112234567
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 001237 934 RTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIER 1013 (1117)
Q Consensus 934 ~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lAe~lL~~ 1013 (1117)
+.++.++..+..++++++|+++||+||+|+||+|||||||+|||+|||||||||+|||++|||++||++|+++|++||++
T Consensus 881 ~~~~~~~~~~~~~~~~~~El~~LL~AL~G~yI~PgpgGdp~R~pdvLPTGRN~ys~DP~~iPT~aAw~~G~~lA~~lL~~ 960 (1220)
T PLN03069 881 RTLFDFLGFCLKQVVADNELGGLKEALEGQYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALASAKVVVDRLLER 960 (1220)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhCCcccCCCCCCccccCCCCCCCCCCccCcCcccCCCHHHHHHHHHHHHHHHHH
Confidence 77888888887777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchhhhhHH
Q 001237 1014 QKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFI 1093 (1117)
Q Consensus 1014 y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp 1093 (1117)
|+++|||+||||||+||||||||||+|++|||||||||||||||++|||+|+|||||+||||||||||||+||||||+||
T Consensus 961 y~~e~~G~yPe~Ia~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwD~~GrV~g~elIPLeELGRPRIDVvv~iSGiFRD~fp 1040 (1220)
T PLN03069 961 QKDENGGKYPETIALVLWGTDNIKTYGESLAQVLWMVGVRPVADALGRVNKVEPVSLEELGRPRIDVVVNCSGVFRDLFI 1040 (1220)
T ss_pred HHHHcCCCCCceeEEEEEcHHhhhhCCHHHHHHHHHcCCeeeeCCCCCcCceEEeCHHHcCCCCeeEEEEecchHHHhHH
Confidence 98777799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-------HhccCCCCCCcchhccc
Q 001237 1094 NQVLFT-------VAISCPTELPICTVCYL 1116 (1117)
Q Consensus 1094 ~~i~Ll-------a~~~~~~~~~~~~~~~~ 1116 (1117)
|||+|| |+|+||.|+||||||++
T Consensus 1041 ~~i~LlD~Av~~aA~~dEp~e~N~Vrkh~~ 1070 (1220)
T PLN03069 1041 NQMNLLDRAVKMVAELDEPAEMNFVRKHAL 1070 (1220)
T ss_pred HHHHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 999986 88999999999999986
No 2
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=100.00 E-value=2.5e-271 Score=2536.60 Aligned_cols=1043 Identities=62% Similarity=1.051 Sum_probs=951.7
Q ss_pred ccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcCCEEEEecc
Q 001237 63 VRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLI 142 (1117)
Q Consensus 63 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~adi~~~sll 142 (1117)
+|||+|+..+++..||||+||+++|+++++.+|++.|++++ ++.++|+.|+.+++++++.+++|+++|++|||||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sl~ 79 (1310)
T PRK12493 1 IRRVAPEDLNGRSLMKFVYVVLEPQYQSALSAAAASLNREN-KLALELSGYLIEELRDPENWEEFKRDVARADFFFGSLL 79 (1310)
T ss_pred CCCcCccccCCcceEEEEEEEeeHHhHHHHHHHHHHhhhcc-CCceEEEEeehhhccCchhHHHHHHHHhhCCEEEeecc
Confidence 59999999999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhcCcCEEEecCChHHHHHhhccCccccccc-CCCCchHHHHHHhhh--cCCCcHHHHHHHHHhC
Q 001237 143 FVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQL-GQSKSPFFQLFKKKK--QGAGFADSMLKLVRTL 219 (1117)
Q Consensus 143 f~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 219 (1117)
|++|+++|+.++|++++++|+++|||+|+||+|++||||+|+|++. +++++.+++++||.+ .+.|++++||+++|++
T Consensus 80 f~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~ltr~G~f~m~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 159 (1310)
T PRK12493 80 FIEDLARPLVEALAPARDRLCPVCVIPSMPALMRLTKLGSFSLAQELGQSKSAIAQFMKKRKPKGGAGEQDRMLKLLRTL 159 (1310)
T ss_pred CcHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHHhhcccceeccccccCCccchhHHHHHhhhccCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999854 566778899999964 3456789999999999
Q ss_pred CCeEEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHH
Q 001237 220 PKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKE 299 (1117)
Q Consensus 220 ~~~l~~lpg~~~~d~~~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~ 299 (1117)
||+||||| +|+||+|+|+++++||.+||.||++|||+||+++|+....+ .+++++|+++|+.|||||+++.+|+++.+
T Consensus 160 ~~~l~~iP-~ka~d~r~~~~~~~Y~~~Gg~eN~~nll~~l~~~~~~~~~~-~~~~~~P~~~P~~GiyhP~~~~~f~~~~~ 237 (1310)
T PRK12493 160 PKVLKYLP-GKAQDARTFILSHQYWLGGSPENLENFLLMLIDRYVPGYKG-KLPQLDPVFYPDLGIWHPLAPEMFEDLKE 237 (1310)
T ss_pred HHHHhhCc-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhcccccc-CCCCCCCcccCCccccCCCcccccCCHHH
Confidence 99999999 69999999999999999999999999999999999743222 46789999999999999999999999999
Q ss_pred HHHHhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccc-cCCC
Q 001237 300 YLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDP-VMKK 378 (1117)
Q Consensus 300 Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~-~~~~ 378 (1117)
|++||+++... ..+++|+|||||||+|+++||++|+|+||++||++|+||+|||++|++++.++++||.+. ..++
T Consensus 238 y~~w~~~~~~~----~~~~~p~Vgil~~r~~~~~~d~~~~dalI~~LE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~ 313 (1310)
T PRK12493 238 YLNWYNKRRDI----SDKLAPTVGLLLQRTHLLTGNDAHYVALIQELEARGARVIPAYAGGLDFRKPVEAFFYDPGNPDT 313 (1310)
T ss_pred HHHHHhhcccc----ccCCCCEEEEEEchhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCcccchHHHHHHHhhcccCC
Confidence 99999754311 123489999999999999999999999999999999999999999999989999999863 1467
Q ss_pred cceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEE
Q 001237 379 PMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIV 458 (1117)
Q Consensus 379 ~~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv 458 (1117)
+.||+|||+|+|+|+|||++++.+.++++|++|||||||++++++||.++|++|++||+|+|++|+|+||||||+|+|++
T Consensus 314 ~~vDaiI~~t~F~l~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~~~W~~s~~Gl~p~~~~~~ValPElDG~i~piv 393 (1310)
T PRK12493 314 PLVDLVVSLTGFALVGGPARQDHPKAIEALKKLNRPYMVALPLVFQTTEEWEESDLGLHPVQVALQVAIPELDGAIEPIV 393 (1310)
T ss_pred CCccEEEEcCcccccCCcccCcchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCcChHHhhheeecccccCeeeeEE
Confidence 88999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCC
Q 001237 459 FAGRDPRTGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYN 538 (1117)
Q Consensus 459 ~~~~~~~~~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~ 538 (1117)
|+|++..++.+.|+||||+++|+|+++|++||+|||+||||||||||||||+||+|||+|||||+||++||++||++||+
T Consensus 394 ~~g~~~~~~~~~pi~eri~~la~r~~~w~~Lr~k~n~eKkVAIil~nyPpg~g~iG~Aa~LDv~~Sl~~iL~~Lk~~GY~ 473 (1310)
T PRK12493 394 LSGRDGATGKAIPLQDRIEAIAERAIRWVRLRRKPRAEKKLAITLFSFPPDKGNVGTAAYLDVFGSIYRLLQELKAAGYD 473 (1310)
T ss_pred EEEEecCCceeecCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCC
Confidence 99998766789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhccccccCCCCcccccccCHHHHhhhhHHHHHHHHHhCCCCCCCCCCCCeEEEeeeeeccEEEE
Q 001237 539 VEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIG 618 (1117)
Q Consensus 539 v~~~P~~~~~L~~~ll~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~pPG~~~~~g~~~~I~G~~fGNVfIg 618 (1117)
| ++|+|+++|+++|++++...|.++..+++..+|+++|++|++.+++|+++||+|||++|++|++|+|||++|||||||
T Consensus 474 v-~~P~~~~eL~~~l~~~~~~~~~~~~~~~~~~i~~~~Y~~w~~~~~~i~~~WG~~pG~~~~~g~~~~I~G~~fGNVfIg 552 (1310)
T PRK12493 474 V-ELPESPKELMEAVLEDNRAQYGSPELNVAARLSVEEYERLTPYYERIEENWGPAPGELNSDGQNLLILGKHFGNVFIG 552 (1310)
T ss_pred C-CCCCCHHHHHHHHHhcCCCccCCccccccccCCHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCEEEEeeeeECCEEEE
Confidence 9 899999999999999877777665457788999999999999999999999999999999998899999999999999
Q ss_pred eCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCCeeeEE
Q 001237 619 VQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYY 698 (1117)
Q Consensus 619 vQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniYpY 698 (1117)
|||+|||++|||++|||+++||||||+|||+||+++|+||||||||||||||||||||+|||++||||+|||+|||||||
T Consensus 553 vQP~rG~~~d~~~l~h~~~~pP~HqYlAfY~WL~~~F~ADAviH~GtHGtlEwLPGK~vGLS~~cwPd~liG~lP~iY~Y 632 (1310)
T PRK12493 553 VQPSFGYERDPMRLLMSKDASPHHGFAAYYTWLEKVWGADAVLHFGTHGALEFMPGKQMGMSASCWPDRLIGSLPNFYYY 632 (1310)
T ss_pred eCCCCCcCCCchhhhcCCCCCCChhHHHHHHHHHhhcCCCEEEECCCCcCcccCCCccccCCcccChHHHhCCCCEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccCCCCcc
Q 001237 699 AANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVELPDE 778 (1117)
Q Consensus 699 ivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~e~a~~~~L~~dl~~~~~ 778 (1117)
||||||||+||||||+|||||||||||++||||++|++|+++|++|+++.++.++..+++.|+++|+++||++|++++..
T Consensus 633 ivnNPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~~~~~~~l~~~I~~~a~~l~L~~dl~~~~~ 712 (1310)
T PRK12493 633 AVNNPSEATIAKRRGYATLISYLTPPAENAGLYKGLRELSELIGSYQQLPDSGRGIQIVNTIREKARQLNLDKDVDLPET 712 (1310)
T ss_pred eCCCcchHHHHHhcccceeeecCCCCcccccCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHcCCchhcCCCcc
Confidence 99999999999999999999999999999999999999999999999998888888999999999999999999987542
Q ss_pred c-ccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCChhhh
Q 001237 779 G-AEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRDIEDI 857 (1117)
Q Consensus 779 ~-~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~~~~~sL~~~la~~~g~d~~~l 857 (1117)
. ..++.+++++++++||+||||||+++||+||||||++|++|++++++.+|+++++.+.++.||++++++.+|++|+++
T Consensus 713 ~~~~~~~~~~~~~l~~l~~yL~el~~~~ip~GLHv~G~~p~~e~l~~~l~~i~~~~~~~~~~~~L~~~ia~~~g~~~~~l 792 (1310)
T PRK12493 713 DAAELDEEERDAYVGALYRELMEIESRLIPCGLHVIGKPPTAEEAIDTLVLIASLDRPEEGIRSLPELIAESLGRDYEEL 792 (1310)
T ss_pred cccccccccHHHHHHHHHHHHHHHHhhhcCCCCeecCCCCChHHHHHHHHHHhccccccccccchHHHHHHHhccchhhh
Confidence 1 223345789999999999999999999999999999999999999999999998877778899999999999999999
Q ss_pred hcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhcccccccccHHHHHHHH
Q 001237 858 YRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATLRTLF 937 (1117)
Q Consensus 858 ~~~~~~~~~~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (1117)
+.+...+.....++++.+.+.+++.++.++.......+.+..+.. ...+.......+............+.+.++.++
T Consensus 793 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 870 (1310)
T PRK12493 793 YRRNDRGVLADVELLQKITEITREAVRALVGELTGADGRVSLVSK--LNFFNMSLPRPWLAALYLAGYAGVDPGELKPLF 870 (1310)
T ss_pred hccccccccchHHHHHHHHHHHHHHHHHHHhhcccccccccccch--hhhhccccchhhhhhhhcccccccchHHHHHHH
Confidence 988777767777888999999999999888765443322110000 001111000111111111111122345677777
Q ss_pred HHHHHHHHhhcchhHHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 001237 938 EFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIERQKVD 1017 (1117)
Q Consensus 938 ~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lAe~lL~~y~~e 1017 (1117)
+++..+..++++++|+++||+||+|+||+|||||||+|||+|||||||||+|||++|||++||++|+++|++||++|+ +
T Consensus 871 ~~~~~~~~~l~~~~El~~Ll~AL~G~yI~PgpgGdp~R~pdvLPTGRN~ys~DP~~iPT~aAw~~G~~lA~~lL~~y~-~ 949 (1310)
T PRK12493 871 EYLEFCLEQICADNELGSLLKALDGEYILPGPGGDPVRNPAVLPTGRNIHALDPQSIPTAAAVAAGKRVVDELLERQR-E 949 (1310)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHhCCcccCCCCCCCcccCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHH-H
Confidence 888877777778899999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred cCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchhhhhHHHHHH
Q 001237 1018 NGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQVL 1097 (1117)
Q Consensus 1018 ~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~ 1097 (1117)
+||+||||||+||||||||||+|++|||||||||||||||++|||+|+|+|||+||||||||||||+||||||+|||||+
T Consensus 950 e~G~yPe~ia~vLWgtdt~rt~Ge~iAqiL~LlGvrPvwd~~GrV~g~elIPLeeLGRPRIDVvv~iSGiFRD~fp~~i~ 1029 (1310)
T PRK12493 950 EQGAWPETIACVLWGTDNIKTYGEGLAQALALVGARPVPDELGRVNKVELIPLEELGRPRIDVVVTCSGIFRDLFINQMA 1029 (1310)
T ss_pred hcCCCCceeEEEEEchhhhhhCCHHHHHHHHHcCCccccCCCCCccceEEeCHHHcCCCCeeEEEEecchhHhhHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-------HhccCCCCCCcchhccc
Q 001237 1098 FT-------VAISCPTELPICTVCYL 1116 (1117)
Q Consensus 1098 Ll-------a~~~~~~~~~~~~~~~~ 1116 (1117)
|| |+++||.|+||||||++
T Consensus 1030 LlD~Av~laA~~dEp~e~N~Vrkh~~ 1055 (1310)
T PRK12493 1030 LLDQAVKLAAEADEPLEMNFVRKHAL 1055 (1310)
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 86 88999999999999986
No 3
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=100.00 E-value=2.7e-264 Score=2451.19 Aligned_cols=949 Identities=48% Similarity=0.858 Sum_probs=874.2
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcCCEEEEeccccHHHHHHHHHHHH
Q 001237 77 VKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELALKIKAAVE 156 (1117)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~adi~~~sllf~~~~~~~~~~~v~ 156 (1117)
||||+||+++|+++++.+|++.|+++++ +.++|+.|+.+|+++++++++|+++|++|||||+||||++|+++|+.++|+
T Consensus 1 ~~~v~~~~~~~~~~~~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sl~f~~~~~~~~~~~l~ 79 (1216)
T TIGR02025 1 MRIVLIVGEEQYNAALSRAAANLNRELP-LDIDLTIFVLSDLDEPEKRLEFEQAIQEADLFFGSMLFDEDQVDWLREVLS 79 (1216)
T ss_pred CEEEEEechHHhhHHHHHHHHHhhhcCC-CceEEEEeehhhccChhhHHHHHHHHhhCCEEEeecccCHHHHHHHHHHHH
Confidence 6899999999999999999999999998 889999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhhcC-C----CcHHHHHHHHHhCCCeEEEcCCCCh
Q 001237 157 KERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQG-A----GFADSMLKLVRTLPKVLKYLPSDKA 231 (1117)
Q Consensus 157 ~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~l~~lpg~~~ 231 (1117)
+++++||++|||+|+||+|++||||+|+|++ +++++.+++++||.+.+ + +..++||+++|++||+||||| +|+
T Consensus 80 ~~~~~~~~~~~~~s~~e~~~ltr~G~f~m~~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iP-~ka 157 (1216)
T TIGR02025 80 QIRNQEDTVVVFESMPELMKLTKLGSFAMGK-PAEKSGMPKPVKKIADKSNGRGEDKLAGYMKLLKIVPKLLKFIP-GKA 157 (1216)
T ss_pred hhccCCCeEEEecChHHHHHhhcccceeccc-CCCcccchHHHHHHhhccCCCccccHHHHHHHHHHhhhhhhhCC-chH
Confidence 9999999999999999999999999999986 56667778999985532 2 345899999999999999999 599
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCC--cCCCCcccccccccccCCCCCCcCCHHHHHHHhccCCC
Q 001237 232 QDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQK--IEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRKD 309 (1117)
Q Consensus 232 ~d~~~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~--~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~~ 309 (1117)
||+|+|+.+++||.+||.||++|||+||+.+|+ +.. .++++|+++|+.|||||+++.+|+|+.+|++||+++..
T Consensus 158 ~d~r~~~~~~~Y~~~Gg~eN~~~ll~~l~~~~~----~~~~~~~~~~P~~~P~~GiyhP~~~~~f~~~~~y~~w~~~~~~ 233 (1216)
T TIGR02025 158 QDLRNWLLSYQYWLGGSPENVANMLRLLADKYF----DGEIGGKIDPPVEYPDIGLYHPDAKGFFETVKEYLAWYKKREG 233 (1216)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc----CCcccCCCCCCcccCCcccccCCcccccCCHHHHHHHHhhccc
Confidence 999999999999999999999999999999987 322 37899999999999999999999999999999976532
Q ss_pred CccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEeccc
Q 001237 310 TNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTG 389 (1117)
Q Consensus 310 ~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tg 389 (1117)
. +.+++|+|||+|||+|+++||++|+|+||++||++|+||+|||++|++++.++++||.+...+++.||+|||+||
T Consensus 234 ~----~~~~~p~Vgil~~r~~~~~~~~~~~dalI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~vdaiI~~~g 309 (1216)
T TIGR02025 234 C----RAPKAPRVGLLLLRKHLLTGNQAHYDNLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTG 309 (1216)
T ss_pred c----cCCCCCEEEEEEchhhhhcCCcHHHHHHHHHHHHCCCcEEEEEecCccccHHHHHHHHhcccCCCCccEEEECCc
Confidence 1 245689999999999999999999999999999999999999999999989999999864345568999999999
Q ss_pred ccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEeecCCCCcc
Q 001237 390 FALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRTGKA 469 (1117)
Q Consensus 390 F~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~~~~~~~~ 469 (1117)
|+|+|||++++.+.++++|++||||||+++++.+||.++|++|++||+|+|++|+|+||||||+|+|++|+|++..++.+
T Consensus 310 F~l~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~~~W~~s~~Gl~p~~~~~~valPElDG~I~piv~~g~~~~~~~~ 389 (1216)
T TIGR02025 310 FSLVGGPAGSDAAAAVEILKGLDVPYIVAIPLLFQTIESWTASDLGLGPLQVALLVAIPELDGAIAPVILGGLVGGAGDA 389 (1216)
T ss_pred hhccCCCccccchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCCChHHhhheeechhhCCeeeeEEEEEEecCCCce
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999998766789
Q ss_pred ccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q 001237 470 HALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEAL 549 (1117)
Q Consensus 470 ~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~P~~~~~L 549 (1117)
.||||||+++|+|+++|++||+|||+||||||||||||||++|+|||+|||||+||++||++||++||+|+++|+|+++|
T Consensus 390 ~pi~eri~~la~r~~~w~~Lr~k~n~eKkvAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~lP~~~~eL 469 (1216)
T TIGR02025 390 IPVQERLERLAGRVKRWVRLRKKPNAEKKVAIVLFNFPPGLGNVGTAAYLDVFESLYELLHRLKDEGYNVGELPESVEEL 469 (1216)
T ss_pred eeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCCCcccccccCHHHHhhhhHHHHHHHHHhCCCCCCCCCCCCeEEEeeeeeccEEEEeCCCCCCCCCc
Q 001237 550 IEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDP 629 (1117)
Q Consensus 550 ~~~ll~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~pPG~~~~~g~~~~I~G~~fGNVfIgvQP~RG~~~Dp 629 (1117)
+++|++++...+.....+++.++|+++|++|++.+++|+++||+|||++|++|++|+|||++||||||||||+|||++||
T Consensus 470 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~~pG~~~~~g~~~~I~g~~fGNVfIgvQP~rG~~~d~ 549 (1216)
T TIGR02025 470 IEAVLEGNEEQYGSAKLNVAVRIPVEQYERLYPRTERIEEQWGSAPGELLTDGDELHIGGAQFGNVFIGVQPSFGYEGDP 549 (1216)
T ss_pred HHHHHhcCccccccccccccccCCHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeEEEEEEeECCEEEEeCCCcCcCCCc
Confidence 99999877666554445667789999999999999999999999999999999889999999999999999999999999
Q ss_pred ccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCCeeeEEecCCcchhhHH
Q 001237 630 MRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIA 709 (1117)
Q Consensus 630 ~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniYpYivnnPgEg~~A 709 (1117)
|++|||+++||||||+|||+||+++|+||||||||||||||||||||+|||++||||+|||+|||||||||||||||+||
T Consensus 550 ~~l~h~~~~~P~HqY~AfY~WL~~~f~ADAviH~GtHGtlEwLPGK~~GLS~~cwPd~liG~lP~iY~Y~vnNpgEg~~A 629 (1216)
T TIGR02025 550 MRLLFERDATPHHQFAAFYRWLDRDFKADAVLHFGTHGSLEFMPGKQTGLTGECWPDRLLGDLPNFYIYAVNNPSEATIA 629 (1216)
T ss_pred hhhhcCCCCCCCchHHHHHHHHHhhcCCCEEEECCCCcCcccCCCccccCCcccChHHHhCCCCEEeEEeCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccCCCCcccccCChhHHhH
Q 001237 710 KRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVELPDEGAEISAKERDL 789 (1117)
Q Consensus 710 KRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~e~a~~~~L~~dl~~~~~~~~~~~~~~d~ 789 (1117)
||||+|||||||||||++||||++|++|+++|++|+++.+..++..+++.|+++|+++||++|++.... +++++
T Consensus 630 KRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~~~~~~~l~~~I~~~a~~l~L~~dl~~~~~------~~~~~ 703 (1216)
T TIGR02025 630 KRRGYATLISYLTPPLERAGLYKGLRELKELIAEYRELPNAERGAQIVEAIMKKAVDLNLDTDCPRPPQ------EPFED 703 (1216)
T ss_pred HhcccCEecCCCCCCccccCccHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHcCCchhcCCCCc------ccHHH
Confidence 999999999999999999999999999999999999987666788999999999999999999875322 46889
Q ss_pred HHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCChhhhhcCCCCCcccHH
Q 001237 790 VVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRDIEDIYRGSDKGILKDV 869 (1117)
Q Consensus 790 ~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~~~~~sL~~~la~~~g~d~~~l~~~~~~~~~~~~ 869 (1117)
++++||+||||||+++||+||||||++|++|++++++.+|++.++.+.+..+++.+ ++++.+...
T Consensus 704 ~l~~l~~yL~el~~~~ip~GLHv~G~~p~~e~l~~~l~~~~~~~~~~~~~~~l~~l---------~~~~~~~~~------ 768 (1216)
T TIGR02025 704 FVGRLYIYLTELENRLIPNGLHVLGEAPSAESLIDTLMEIASVDREELGSLSLPFL---------DEIGRNSHY------ 768 (1216)
T ss_pred HHHHHHHHHHHHHhhhcCCCCeecCCCCChHHHHHHHHHHhcccccccccccchhH---------HHHHhcccc------
Confidence 99999999999999999999999999999999999999999887755433333221 111100000
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhcccccccccHHHHHHHHHHHHHHHHhhcc
Q 001237 870 ELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATLRTLFEFVGECLKLVVA 949 (1117)
Q Consensus 870 ~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 949 (1117)
+ .....+.++++..+..++.+
T Consensus 769 -------------------------~----------------------------------~~~~~~~l~~~~~~~~~l~~ 789 (1216)
T TIGR02025 769 -------------------------G----------------------------------SEEERESLQYLMMILALSDN 789 (1216)
T ss_pred -------------------------c----------------------------------hhhHHHHHHHHHHHHHhccC
Confidence 0 00011123444445555667
Q ss_pred hhHHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 001237 950 DNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIERQKVDNGGKYPETVALV 1029 (1117)
Q Consensus 950 ~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lAe~lL~~y~~e~~G~yPe~va~v 1029 (1117)
++|+++||+||+|+||+|||||||+|||+|||||||||+|||++|||++||++|+++|++||++|+++|+|+||||||+|
T Consensus 790 ~~El~~LL~aL~G~yI~PgpgGdp~R~p~vLPTGRN~ys~DP~~iPT~aA~~~G~~~A~~lL~~y~~~~~G~yPe~va~v 869 (1216)
T TIGR02025 790 DDEMNGLLRALEGEYIPPGPGGDLVRNPNVLPTGRNIHALDPYRIPSPAAVKRGTRIADKLLAQHRAENGGNYPETIAVV 869 (1216)
T ss_pred hHHHHHHHHHhCCceeCCCCCCCcccCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred EEeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchhhhhHHHHHHHH-------Hhc
Q 001237 1030 LWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQVLFT-------VAI 1102 (1117)
Q Consensus 1030 LWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~Ll-------a~~ 1102 (1117)
|||||||||+|++|||||||||||||||++|||+|+|||||+||||||||||||+||||||+|||||+|| |++
T Consensus 870 LWgtdt~rt~Ge~iAqiL~LlGvrPvwd~~GrV~g~elIPL~eLgRPRIDVvv~iSGiFRD~fp~~i~LlD~Av~~aA~~ 949 (1216)
T TIGR02025 870 LWGTDNIKTKGESVAQALALMGAEPVPDALGRIVRYELIPLEKLGRPRIDVVVTLSGIFRDLFVNQMELLDRAVKLAADA 949 (1216)
T ss_pred EEehHhhhhCCHHHHHHHHHcCCccccCCCCCccceEEeCHHHcCCCCeeEEEEecchhHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 889
Q ss_pred cCCCCCCcchhccc
Q 001237 1103 SCPTELPICTVCYL 1116 (1117)
Q Consensus 1103 ~~~~~~~~~~~~~~ 1116 (1117)
+||.|+||||||++
T Consensus 950 dEp~e~N~Vrkh~~ 963 (1216)
T TIGR02025 950 DEPEEMNFVRKHAL 963 (1216)
T ss_pred CCCcccCHHHHHHH
Confidence 99999999999986
No 4
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=100.00 E-value=1.2e-259 Score=2403.44 Aligned_cols=920 Identities=41% Similarity=0.720 Sum_probs=850.1
Q ss_pred ceeecCccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcC
Q 001237 55 LFTQTSPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENA 134 (1117)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 134 (1117)
||+++++..| ++||||+||+++|+++++.+|++.|+++++++.++||+ +.+|+++++++++|+++|++|
T Consensus 1 ~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~a 69 (1209)
T PRK13405 1 MPKRTSAADG----------TPVRVVIVTLDSHLAGAAARARPRLQRDFPGLTLSVHA-AAEWGEDPAALEACRADIATG 69 (1209)
T ss_pred CCcccccccC----------CceEEEEEechHHhhHHHHHHHHHHhhcCCCCcEEEEe-chhhhcChhhHHHHHHHHhhC
Confidence 5666666655 34999999999999999999999999999999999999 999999999999999999999
Q ss_pred CEEEEeccccHHHHHHHHHHHHHhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhhc--CCC--cHH
Q 001237 135 NIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQ--GAG--FAD 210 (1117)
Q Consensus 135 di~~~sllf~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~~--~~~--~~~ 210 (1117)
||||+||||++||++++.++|++++++||++|||+|+||+|++||||+|+|++ +++.+++++||.+. +.| ..+
T Consensus 70 d~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~s~~e~~~ltr~G~f~m~~---~~~~~~~~~k~~~~~~~~~~~~~~ 146 (1209)
T PRK13405 70 DIVIATMLFMDEHIRAVLPALQARRDACDAMVGCMSAGEVVKLTRMGKFDMSG---PASGPLALLKKLRGKKKEGGSSGE 146 (1209)
T ss_pred CEEEeecccCHHHHHHHHHHHHHhhcCCCeEEEEcCcHHHHHHhcccceeccC---CcccchHHHHHhhhccCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999973 44556788888542 233 448
Q ss_pred HHHHHHHhCCCeEEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCcccc---CCCcCCCCccccccccccc
Q 001237 211 SMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALR---GQKIEYADPVLFLDTGIWH 287 (1117)
Q Consensus 211 ~~~~~~~~~~~~l~~lpg~~~~d~~~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~---g~~~~~~~P~~~P~~GiyH 287 (1117)
+|++++|++||+||||| +|+||+|+|++++|||.+||.||++|||+||+.+|+.... ...+++++|+++|+.||||
T Consensus 147 ~~~~~~~~~pk~l~~iP-~ka~d~r~~~~~~~Yw~~Gg~eN~~nll~~l~~~~~~~~~~~~~~~~~~~~P~~~P~~Giyh 225 (1209)
T PRK13405 147 GQMAMLRRLPKILRFIP-GTAQDVRAYFLTLQYWLAGSDENVANMVRFLVDRYAAGPRAALRGIAKAAAPIEYPEVGLYH 225 (1209)
T ss_pred HHHHHHHHHHHHhhhCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHccCcccccccCCCCCCchhcccceeEC
Confidence 99999999999999999 5999999999999999999999999999999999973210 1125689999999999999
Q ss_pred CCCCC-CcCCHHHHHHHhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchh
Q 001237 288 PLAPC-MYDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGP 366 (1117)
Q Consensus 288 P~~~~-~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~ 366 (1117)
|+++. +|++..+|.+| .+++|+|||+|||+|+++||++|+|+||++||++|+||||||++|++.+++
T Consensus 226 P~~~~~~~~~~~~~~~~------------~~~~p~Vgil~~r~~~~~~d~~~~d~lI~~lE~~G~~vipvf~~gl~~~~~ 293 (1209)
T PRK13405 226 PRMPGRITEDLDDLPRP------------AGAKGTVGLLLMRSYVLAGNTAHYDGVIEALEARGLRVVPAFASGLDGRPA 293 (1209)
T ss_pred CCCcccccccHHHHhhc------------ccCCCeEEEEEehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHH
Confidence 99865 67888888765 234799999999999999999999999999999999999999999999889
Q ss_pred hhhhhccccCCCcceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhhee
Q 001237 367 VERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVA 446 (1117)
Q Consensus 367 v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~Va 446 (1117)
+++||.+ ++++.||+|||+|||+|+|||++++.++++++|++||||||+++++++||.++|++|++||+|.|++|+|+
T Consensus 294 v~~~~~~--~~~~~vDaiI~~tgF~l~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~~~W~~s~~Gl~p~~~~~~Va 371 (1209)
T PRK13405 294 IEAYFMK--DGRPTVDAVVSLTGFSLVGGPAYNDSAAAEEILARLDVPYLAAHPLEFQTLEQWAASDRGLGPVEATMMVA 371 (1209)
T ss_pred HHHHHhc--cCCCCccEEEEcCcccccCCcccCcchhHHHHHHHCCCCEEEEeecCCCCHHHHHhCCCCCCHHHHhHhee
Confidence 9999975 56789999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccccCcceeeEEEEeecCC-----------------CCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCC
Q 001237 447 LPELDGGLEPIVFAGRDPR-----------------TGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPD 509 (1117)
Q Consensus 447 lPElDG~I~piv~~~~~~~-----------------~~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~ 509 (1117)
||||||+|+|++|+|++.. +..+.|+||||+++|+|+++|++||+|||+||||||||||||||
T Consensus 372 lPElDG~i~piv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~pi~eri~~la~r~~~w~~Lr~k~n~eKkvAIil~nyPpg 451 (1209)
T PRK13405 372 IPELDGATGPMVFGGRSDGVACTGCDRGCKFSGNDAARDMAVCPERAEMLAARVARLVALRRSERAERKVAVVLFNFPPN 451 (1209)
T ss_pred chhhcCcceeEEEEEEecccccccccccccccccccccceeeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCC
Confidence 9999999999999998642 13678999999999999999999999999999999999999999
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHhccccccCCCCcccccccCHHHHhhhhHHHHHHHH
Q 001237 510 KGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEE 589 (1117)
Q Consensus 510 ~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~P~~~~~L~~~ll~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~ 589 (1117)
++|+|||+|||||+||++||++||++||+| ++|+|+++|+++|++++...|.++ .+++..+|+++|.+|++++++|++
T Consensus 452 ~~~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v-~~P~~~~eL~~~l~~g~~~~~~~~-~~~~~~~~~~~Y~~~~~~~~~i~~ 529 (1209)
T PRK13405 452 AGATGTAAYLSVFESLFNTLRAMKAEGYTV-EVPESVDALREAILGGNAARYGTP-ANVHARVPADDHVRREPWLAEIEA 529 (1209)
T ss_pred CCccccccccChHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHhCCCCCCCCc-hhhhccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 699999999999998877777654 355678999999999999999999
Q ss_pred HhCCCCCCCCCCCCeEEEeeeeeccEEEEeCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcC
Q 001237 590 NWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSL 669 (1117)
Q Consensus 590 ~WG~pPG~~~~~g~~~~I~G~~fGNVfIgvQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtL 669 (1117)
+||+|||++|++|++|+|||++||||||||||+|||++|||++|||+++||||||+|||+||+++|+|||||||||||||
T Consensus 530 ~WG~~pG~~~~~g~~~~I~g~~fGNVfig~QP~rG~~~d~~~l~hd~~~pP~HqYlAfY~WL~~~F~ADAviH~GtHGtl 609 (1209)
T PRK13405 530 QWGPAPGRHQSDGRSIFVLGAQFGNVFVGVQPAFGYEGDPMRLLFEKGFAPTHAFSAFYRWLREDFGADAVLHFGTHGAL 609 (1209)
T ss_pred HcCCCCCCcCCCCCeEEEeeeeECCEEEEeCCCCCcCCCchhhhcCCCCCCCchHHHHHHHHHhhcCCCEEEECCCCccc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCCcchhhcCCCCeeeEEecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc-
Q 001237 670 EFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK- 748 (1117)
Q Consensus 670 EwLPGK~vGLS~~cwPd~liGdlPniYpYivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~- 748 (1117)
|||||||+|||++||||+|||+|||||||||||||||+||||||+|||||||||||++||||++|.+|+++|++|+++.
T Consensus 610 EwLPGK~vGLS~~cwPd~liGdlP~iY~Y~vnNpgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~ 689 (1209)
T PRK13405 610 EFMPGKQAGLSAACWPDRLIGDLPNVYLYAANNPSEGTLAKRRSAATLISYLTPPLAAAGLYRGLLDLKASLERWRGLPP 689 (1209)
T ss_pred ccCCCccccCCcccChHHHhCCCCEEEEEecCCcchHHHHHhcccCEecCCCCCCCcccCCcHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCCCchHHHHHHHHHHHHcCCcccCCCCcccccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHH
Q 001237 749 -DTGRGPQIVSSIISTAKQCNLDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLV 827 (1117)
Q Consensus 749 -~~~~~~~l~~~I~e~a~~~~L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~ 827 (1117)
++.++..+++.|++++.++||+.|++.. .+++++++++||+||||||+++||+||||||++|++|+++++|.
T Consensus 690 ~~~~~~~~l~~~I~~~a~~~~L~~d~~~~-------~~~~~~~l~~L~~yL~el~~~~ip~GLHv~G~~p~~e~l~~~l~ 762 (1209)
T PRK13405 690 DATEERAELAALIQAQAAAVDLAPAEPAW-------EEEAGARIAKLWAALLELEYTLIPHGLHVVGEPPSEEERVDLLL 762 (1209)
T ss_pred cChhHHHHHHHHHHHHHHHcCCCcccCcc-------cccHHHHHHHHHHHHHHHHhcccCCCCeecCCCCChHHHHHHHH
Confidence 3445779999999999999999887531 24688999999999999999999999999999999999999998
Q ss_pred HHHhcCCCcccccchhHHHHHHhCCChhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhh
Q 001237 828 NIAALDRPEDEIASLPSILAETVGRDIEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSI 907 (1117)
Q Consensus 828 ~i~~~~r~~~~~~sL~~~la~~~g~d~~~l~~~~~~~~~~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~ 907 (1117)
+|++.+.. . . +.
T Consensus 763 ~~~~~~~~-----------------------------~------~--------~~------------------------- 774 (1209)
T PRK13405 763 AMAEASHG-----------------------------K------R--------AE------------------------- 774 (1209)
T ss_pred HHhcCccc-----------------------------h------H--------HH-------------------------
Confidence 87643210 0 0 00
Q ss_pred hccCCCchhhhhhcccccccccHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCccc
Q 001237 908 LGFGINEPWIQYLSNTKFYRADRATLRTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIH 987 (1117)
Q Consensus 908 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfy 987 (1117)
+.+++.+++|+++||+||+|+||+|||||||+|||+|||||||||
T Consensus 775 -----------------------------------~~~l~~~~~El~~LL~aL~G~yI~PgpgGdp~R~pdvLPTGRN~y 819 (1209)
T PRK13405 775 -----------------------------------IDRLLAEDHELPALLRALDGRFIRPVPGGDLLRTPAILPTGRNLH 819 (1209)
T ss_pred -----------------------------------HHHhhhchHHHHHHHHHhCCcccCCCCCCCcccCCCCCCCCCccc
Confidence 001123468999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEE
Q 001237 988 ALDPQAIPTTAAMQSAKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEP 1067 (1117)
Q Consensus 988 s~DP~~iPT~aAw~~G~~lAe~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~El 1067 (1117)
+|||++|||++||++|+++|++||++|+ ++||+||||||+||||||||||+|++|||||||||||||||++|||+|+||
T Consensus 820 s~DP~~iPT~~A~~~G~~~A~~lL~~y~-~e~G~yPe~va~vLWgtdt~rt~Ge~iAqiL~LlGvrPvwd~~GrV~g~el 898 (1209)
T PRK13405 820 GFDPFRIPSAFALQDGARQAARLLERHA-AEGNPLPESVALVLWGTDNLKSEGGPIAQALALMGARPRFDSYGRLAGAEL 898 (1209)
T ss_pred CcCcccCCCHHHHHHHHHHHHHHHHHHH-HhcCCCCceEEEEEEehHhhhhCCHHHHHHHHHcCCCcccCCCCCCCceEE
Confidence 9999999999999999999999999997 457999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCcceEEEecCchhhhhHHHHHHHH-------HhccCCCCCCcchhccc
Q 001237 1068 VSLEELGRPRIDVVVNCSGVFRDLFINQVLFT-------VAISCPTELPICTVCYL 1116 (1117)
Q Consensus 1068 IPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~Ll-------a~~~~~~~~~~~~~~~~ 1116 (1117)
|||+||||||||||||+||||||+||+||+|| |+++||.|+||||||++
T Consensus 899 IPl~eLGRPRIDVvv~iSGiFRD~fp~~i~LlD~Av~~aA~~dEp~e~N~Vrkh~~ 954 (1209)
T PRK13405 899 IPLEELGRPRIDVVMTLSGIFRDLLPLQTKLLAEAAFLAASADEPLEQNFVRKHAL 954 (1209)
T ss_pred eCHHHcCCCCeeEEEEecchHHhhHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 99999999999999999999999999999986 88999999999999986
No 5
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=100.00 E-value=5.3e-232 Score=2169.11 Aligned_cols=929 Identities=31% Similarity=0.528 Sum_probs=794.6
Q ss_pred cccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcCCEEEEeccccH
Q 001237 66 IVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVE 145 (1117)
Q Consensus 66 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~adi~~~sllf~~ 145 (1117)
..|...+....||||+|+++.++++++.++++. +.+.+.+.++|+.|++++++++ +++|+++|++|||||+||||++
T Consensus 58 ~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~a~~-~~~~~~~~l~l~~~~~~~~~~~--~~~~~~ai~~ad~~~~sl~f~~ 134 (1353)
T PLN03241 58 PQPKKHNTARTRRIVLVSGFESFNVGLYKQAAR-LLKRRCPNVDLVVFSDRDIESD--RERFAAALDGADVFFGSLLFDY 134 (1353)
T ss_pred CCCccccCCCceEEEEEEchhhhhHHHHHHHHH-hccCCCCceEEEEeehhhhccC--HHHHHHHHhcCCEEEEeccCcH
Confidence 456666777779999999999999999998888 5555557899999999999974 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCcCEEEecCChHHHHHhhccCccccccc-CCCCchHHHHHHhhh--cCCCcH----HHHHHHHHh
Q 001237 146 ELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQL-GQSKSPFFQLFKKKK--QGAGFA----DSMLKLVRT 218 (1117)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~-~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~ 218 (1117)
|+++|++++|+ +||++|||+|+||||++||||+|+|+++ +++++.++.++||.+ .+.|+. ++||+++|+
T Consensus 135 ~~~~~~~~~l~----~~~~~~~~~s~~e~m~ltr~G~f~m~~~~~~~~~g~~~~~k~~~~~~~~g~~~~~~~~~~~~~~~ 210 (1353)
T PLN03241 135 DQVEWLRARLE----KVPPRLVFESALELMSCNSVGSFSMKAAPGGKKAGPPPAVKAVLSKFGSGKEEDKLVGYLSFLKI 210 (1353)
T ss_pred HHHHHHHHHHh----cCCeEEEecChHHHHhhhcccceecccccCCCcccchHHHHHHHhhcCCCcchhhHHHHHHHHHh
Confidence 99999999996 8999999999999999999999999865 566666788999854 333433 577999999
Q ss_pred CCCeEEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCcccc---CCCcCCCCcccccccccccCCCCC---
Q 001237 219 LPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALR---GQKIEYADPVLFLDTGIWHPLAPC--- 292 (1117)
Q Consensus 219 ~~~~l~~lpg~~~~d~~~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~---g~~~~~~~P~~~P~~GiyHP~~~~--- 292 (1117)
+||+||||||+|+||+|+|+.+++||.+||.+|++|||+||+++|+.... +..+++++|+++|+.|||||+++.
T Consensus 211 ~pk~lk~iP~~ka~D~r~~~~~~~Yw~~Gg~eN~~nll~~L~~~y~~~~~~~~~~~~~~~~P~~~P~~GiYHPd~~~~~~ 290 (1353)
T PLN03241 211 GPALLKFVPGEKASDLRNWLTVYRYWNQGGKENVEEAFAYIADQYLAPPSTVTPPSYAPPPLVETPALGLYHPDRERQQA 290 (1353)
T ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccccccccCCCCCCchhcCCceeECCCCccccc
Confidence 99999999999999999999999999999999999999999999973211 013578999999999999999874
Q ss_pred -CcCCHHHHHHHhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhh
Q 001237 293 -MYDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFF 371 (1117)
Q Consensus 293 -~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f 371 (1117)
+|++..+|++||++++.. +.+++++|+|||||||+|+++ +++|+|+||++||++|++|||||++|++.+.+|++||
T Consensus 291 ~~f~~~~~yl~wy~~~~~~--~~~~~~~p~Vgil~yrs~~~~-~~~~idalI~~LE~~G~~vipvf~~gl~~~~~v~~~~ 367 (1353)
T PLN03241 291 PYFESPAEYLEWYARQGAF--VLAPADAPRVAILLYRKHVIT-KQPYLADLVRQMEESGVLPVPIFINGVEAHTIVRDLL 367 (1353)
T ss_pred ccccCHHHHHHHHhhcccc--cccCCCCCEEEEEecchhhhc-CChHHHHHHHHHHHCCCeEEEEEecCccccchhHHhh
Confidence 799999999999754321 123467899999999999998 5899999999999999999999999999989999998
Q ss_pred cccc------------------CCCcceeEEEecccccccCCCCCCCc-----hhHHHHhhhCCCcEEeEecCCCCCHHH
Q 001237 372 VDPV------------------MKKPMVNSAISLTGFALVGGPARQDH-----PRAIEALRKLDVPYIVALPLVFQTTEE 428 (1117)
Q Consensus 372 ~~~~------------------~~~~~vDaiIn~tgF~L~ggpa~~~~-----~~~~~~L~~LnVPvl~ai~l~~qt~ee 428 (1117)
.+.. .+++.||+|||+|||+|+|||++++. +.++++|++|||||||++++++||+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vDaiIn~tgFsLvgGpa~~~~~~~~~e~a~~~L~~lnVPvl~a~~l~~qt~~e 447 (1353)
T PLN03241 368 TSVHEQDLRARGELGRDSTYLKSDAVVVDAVVSTIGFPLVGGPAGSMEAGRQAEVAQTILGAKNVPYVVAAPLLIQDIAS 447 (1353)
T ss_pred hcchhhhhhhhccccchhhhcccCCCCccEEEeCCcccccCCcccCccccccchhHHHHHHhCCCCEEEeeccCCCCHHH
Confidence 6521 35678999999999999999997742 347889999999999999999999999
Q ss_pred HhcCCCCCChhhhhhheeccccCcceeeEEEEeecCCCCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCC
Q 001237 429 WLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRTGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPP 508 (1117)
Q Consensus 429 W~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~~~~~~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp 508 (1117)
|++| ||+|+|++|+|+||||||+|+|++|+|++.. .+.|+||||+++|+|+++|++||+|||+|||||||||||||
T Consensus 448 W~~s--Gl~p~~~~~~valPElDG~I~piv~~g~~~~--~~~pi~eRi~~la~r~~~w~~LR~k~n~eKKVAIil~nyPp 523 (1353)
T PLN03241 448 WKRS--GVGGLQSVVLYSLPELDGAIDTVPLGGLVGD--DIYLVPERVRKLANRLKSWVSLRKTPPSERKVAVMLYGFPP 523 (1353)
T ss_pred HHHc--CCCHHHHHHhhccccccCeeeeEEEEEeccC--CcccCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCC
Confidence 9998 9999999999999999999999999998653 57999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHCCCCCCC-----CCCCHHHHHHHHHh--ccc---c-------------------
Q 001237 509 DKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEG-----LPETSEALIEEIIH--DKE---A------------------- 559 (1117)
Q Consensus 509 ~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~-----~P~~~~~L~~~ll~--~~~---~------------------- 559 (1117)
++||+|||+|||||+||++||++||++||+|++ +| ++++|++.|+. ++. .
T Consensus 524 ~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~~~~~~P-~~~eL~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 602 (1353)
T PLN03241 524 GVGATGTAALLNVPKSLENLLRRLRDEGYDLGDSGTDPNP-SGESLVAALRTLEENPVIAGGATRMQTAIEHPRTRAHDG 602 (1353)
T ss_pred CCCcceeecccCcHHHHHHHHHHHHHcCCCcCCCcCCCCC-CHHHHHHHHHHhhcccccccccccccchhhhhhcccccc
Confidence 999999999999999999999999999999975 78 68999999973 222 1
Q ss_pred ccCCCC---------cccccccCHHHHhhhhH--HHHHHHHHhCCCCCCCCCCCCeEEEeeeeeccEEEEeCCCCCCCCC
Q 001237 560 QFSSPN---------LNIAYKMGVREYQSLTP--YATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGD 628 (1117)
Q Consensus 560 ~~~~~~---------~~~~~~~~~~~Y~~~~~--~~~~i~~~WG~pPG~~~~~g~~~~I~G~~fGNVfIgvQP~RG~~~D 628 (1117)
+|.+.+ .+++..+|+++|++|++ ++++|+++||+|||+.+.+ ||.||+.
T Consensus 603 ~~~~~~~~~~~~g~~~~~~~~l~~~~Y~~w~p~~~~~~ie~~WG~~pg~~~~~------------------~p~rg~~-- 662 (1353)
T PLN03241 603 DATVRHTLAPPLGGAQVVGKDISIDHLEEMLGDVLVKKMERAWGELERYPGLN------------------TPGKGSF-- 662 (1353)
T ss_pred ccccchhccccccccccccccCCHHHHHHHcCHHHHHHHHHHhCCCCCCCCCc------------------CCCCCcc--
Confidence 121111 13466799999999976 5999999999999986432 5888874
Q ss_pred cccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCCeeeEEecCCcchhhH
Q 001237 629 PMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATI 708 (1117)
Q Consensus 629 p~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniYpYivnnPgEg~~ 708 (1117)
++|+||||||||||||||||||||+|||++||||+|||+|||||||||||||||+|
T Consensus 663 ------------------------~~F~ADAvIHfGtHGtLEwLPGK~vGLS~~cwPd~LiGdlPniY~YivnNPgEg~~ 718 (1353)
T PLN03241 663 ------------------------DGYGADAVIHFGMHGTVEWLPGQPLGNDRLSWSDELLGGLPNVYVYAANNPSESIV 718 (1353)
T ss_pred ------------------------cccCCCeEEEccCCcCcccCCCccccCCcccChHHHhCCCCEEEEEecCCcchhHH
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccCCCCccc---------
Q 001237 709 AKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVELPDEG--------- 779 (1117)
Q Consensus 709 AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~e~a~~~~L~~dl~~~~~~--------- 779 (1117)
|||||||||||||||||++||||++|++|+++|++|+++.+.. ...+++.|+++++++||+.||+++...
T Consensus 719 AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~-~~~l~~~I~~~a~~~~L~~dl~~~~~~~~~~~~~~~ 797 (1353)
T PLN03241 719 AKRRGYGTIVSHNVPPYGRAGLYLQLANLKELLNEYREDEETN-SAALRESIFDLVTRAGLDSDCPLVDASSSEGSRITS 797 (1353)
T ss_pred HHhhccceecccCCCCCccccCcHHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHHHcCCchhcCcccccccccccccc
Confidence 9999999999999999999999999999999999999876543 368999999999999999999864210
Q ss_pred -----ccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCCh
Q 001237 780 -----AEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRDI 854 (1117)
Q Consensus 780 -----~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~~~~~sL~~~la~~~g~d~ 854 (1117)
..++.++|++++++||+||||||+++||+||||||++|++|+++++|.+|++..-..
T Consensus 798 ~~~~~~~~~~~~~~~~l~~L~~yL~el~~~~ip~GLHV~G~~p~~e~l~~~l~a~~~~~~~~------------------ 859 (1353)
T PLN03241 798 ESVELRSLSAEVFDDYASRLYAYLGVLENRLFSEGLHVLGAAPTDEQLGSYLAAYFGERLSE------------------ 859 (1353)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCChHHHHHHHHHHhccccch------------------
Confidence 112345789999999999999999999999999999999999999999886421100
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHH-HHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhcccccccccHHHH
Q 001237 855 EDIYRGSDKGILKDVELLRQITEA-SRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATL 933 (1117)
Q Consensus 855 ~~l~~~~~~~~~~~~~~l~~i~~~-~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l 933 (1117)
+.++++... ....+..+.+... .+. .. . .+ .. .....+
T Consensus 860 ---------------~~~~~i~~~~~~~~~~~~~~~~~--~~~-----------~~-~--~~--~~--------~~~~~~ 898 (1353)
T PLN03241 860 ---------------DEIRAVASQNVFTSLFQFLESVA--FQR-----------YR-D--LP--NC--------PTSSQT 898 (1353)
T ss_pred ---------------HHHHHHHHHhhhhhHHHHHHHhh--hhc-----------cc-c--cc--cc--------chhHHH
Confidence 001111000 0000000100000 000 00 0 00 00 001111
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHhhhCCCccCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHH
Q 001237 934 RTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRN-PKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIE 1012 (1117)
Q Consensus 934 ~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~-pdvLPTGRNfys~DP~~iPT~aAw~~G~~lAe~lL~ 1012 (1117)
.. .+.-+..+.++++|+++||+||+|+||+|||||||+|| |+|||||||||+|||++|||++||++|+++|++||+
T Consensus 899 ~~---~~~~~~~l~~~~~El~~LL~AL~G~yI~PgpgGdp~R~~pdvLPTGRN~ya~DP~~iPT~aAw~~G~~lA~~lLe 975 (1353)
T PLN03241 899 QE---AVEIRDLLSRNTEELSGVLKALGGEYVPPAPGGDLLRDGPGVLPTGRNIHALDPYRMPSAAAWARGARVAAAIIE 975 (1353)
T ss_pred HH---HHHHHHHhhcChHHHHHHHHHhCCceeCCCCCCCcccCCCCcCCCCCcccccCcccCCCHHHHHHHHHHHHHHHH
Confidence 11 11112233456899999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchhhhhH
Q 001237 1013 RQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLF 1092 (1117)
Q Consensus 1013 ~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~F 1092 (1117)
+|+++|||+|||||||||||||||||+|++|||||||||||||||++|||+|+|||||+|||||||||||||||||||+|
T Consensus 976 ~y~~~~~G~yPe~Va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GRV~g~ElIPLeELGRPRIDVvv~iSGiFRD~F 1055 (1353)
T PLN03241 976 QHRAANDGAYPETVAVNLWGLDAIKTKGESVAIVLALVGARPVKEGTGRVVRYELIPLSELGRPRVDVLCNMSGIFRDSF 1055 (1353)
T ss_pred HHHHHhCCCCCceeEEEEEchHhhhhCCHHHHHHHHHcCCccccCCCCcccceEEecHHHcCCCCeeEEEEecchhHhhH
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-------HhccCCCCCCcchhccc
Q 001237 1093 INQVLFT-------VAISCPTELPICTVCYL 1116 (1117)
Q Consensus 1093 p~~i~Ll-------a~~~~~~~~~~~~~~~~ 1116 (1117)
||||+|| |+++||.|+||||||++
T Consensus 1056 p~~i~LlD~Av~laA~~DEp~e~N~Vrkh~~ 1086 (1353)
T PLN03241 1056 ANVVDLLDDLFARAADADESDEMNFIKKHAR 1086 (1353)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 9999986 88999999999999986
No 6
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=100.00 E-value=1.6e-223 Score=2095.72 Aligned_cols=922 Identities=31% Similarity=0.546 Sum_probs=770.8
Q ss_pred CCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHH-HhhcCCEEEEeccccHHHHH-HH
Q 001237 74 LPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCK-DLENANIFIGSLIFVEELAL-KI 151 (1117)
Q Consensus 74 ~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~adi~~~sllf~~~~~~-~~ 151 (1117)
.++-.+|+++...+..+++++|...+..++| ++..++...++++...+.+.+ .++.+|+||..++++..... .+
T Consensus 22 q~~a~~~~ls~~~~~l~~~~~a~~~~~~~~~----~lr~~~~~~l~~~~~~d~~~~~~~~~~~~v~v~~~Gg~~~~~~~~ 97 (1244)
T PRK05989 22 QTPADIVLLSAADTDLALLAAAVRRLPDDFP----SLRLANLLRLQQPASVDLYVEDVLRHADVVVVRLLGGRRYWPYGL 97 (1244)
T ss_pred CCCccEEEEEcccchHHHHHHHHHhcccCCc----ceeecChhhcCChhHHHHHHHHhhccCCEEEEECCCCchhhHhHH
Confidence 3444688888888889999888855434444 444557777888888777766 56777899999998755432 23
Q ss_pred HHHHHHhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhhcCCCcHHHHHHHHHhCCCeEEEcCCCCh
Q 001237 152 KAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKA 231 (1117)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lpg~~~ 231 (1117)
...++..+.+--+++++++. ....+ .+.. +.+ +|
T Consensus 98 e~~~~~~~~~~~~l~~~~g~------------------~~~d~----------------~l~~-~st-------~~---- 131 (1244)
T PRK05989 98 EALVALAARRGAPLIVLPGD------------------DAPDP----------------ELPA-LST-------VP---- 131 (1244)
T ss_pred HHHHHHHHhcCCeEEEECCC------------------CCcCc----------------chhh-ccC-------CC----
Confidence 33333333332344443210 00000 0000 000 11
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHHHhccCCCCc
Q 001237 232 QDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRKDTN 311 (1117)
Q Consensus 232 ~d~~~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~~~~ 311 (1117)
...+..+++||.+||.+|++|||+||++.|. +..+.++||+++|+.|||||+ ..|+++++|++||..+
T Consensus 132 --~~~~~~~~~Y~~~GG~~N~~nll~~l~~~~~----~~~~~~~~p~~~p~~giYh~~--~~~~~~~~y~~~~~~~---- 199 (1244)
T PRK05989 132 --AELAARLWRYLAEGGPANLRNLLRYLADTAL----GTGDEPEPPVPLPAAGIYHPG--KAFASLEDYLAWWAPR---- 199 (1244)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHc----CCCCCCCCCcccCccceeCCC--cCcCCHHHHHHHhhcc----
Confidence 2245667899999999999999999998775 455678999999999999986 5789999999998532
Q ss_pred cccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCC---CchhhhhhhccccCCCcceeEEEecc
Q 001237 312 EKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLD---FAGPVERFFVDPVMKKPMVNSAISLT 388 (1117)
Q Consensus 312 ~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~---~~~~v~~~f~~~~~~~~~vDaiIn~t 388 (1117)
..|+|||+|||+|+++||++++|+||++||++|+||+|||+++++ ....+++||. +++.||+|||+|
T Consensus 200 ------~~p~vgilfyr~~~~~~~~~~idali~~Le~~G~nvipvf~~~~k~~~~~~~~~~~~~----~~~~vd~ii~~~ 269 (1244)
T PRK05989 200 ------KAPTVAILFYRAHLQAGNTAPIDALIAALEARGLNPLPVFVSSLKDAESPEVLEDLFN----ADALVDAVLNAT 269 (1244)
T ss_pred ------CCCeEEEEEecchhccCCcHHHHHHHHHHHHCCCeEEEEEecCccccchHHHHHHHhc----CCCCccEEEEcC
Confidence 129999999999999999999999999999999999999999984 3456888874 456799999999
Q ss_pred cccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEeecCC---
Q 001237 389 GFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPR--- 465 (1117)
Q Consensus 389 gF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~~~~--- 465 (1117)
+|++++ +. .++++|++|||||||+++++ ++.++|++|++||+|.+++|+|+||||||+|+|+++++++..
T Consensus 270 ~f~l~~-~~-----~~~~~l~~lnvPVlq~i~~~-~~~~~W~~s~~Gl~~~d~~~~ValPE~DG~I~~~~i~~~~~~~~~ 342 (1244)
T PRK05989 270 GFALAA-AA-----WDVEVLAALDVPVLQVICSG-GNREAWEASSQGLSPRDIAMQVALPEFDGRIIPRAISFKELDEDG 342 (1244)
T ss_pred CccccC-cc-----hhhHHHHHCCCCEEEEeeCC-CCHHHHhhCCCCCCHHHHHHheechhcCCeeeeEEEEEEecccCC
Confidence 999865 21 24689999999999999875 999999999999999999999999999999999999998642
Q ss_pred CCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCC
Q 001237 466 TGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPET 545 (1117)
Q Consensus 466 ~~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~P~~ 545 (1117)
...+.|+||||+++|+|+++|++||+|||+|||||||||||||+++|||+|+|||||+|+++||++||++||+|+++|+|
T Consensus 343 ~~~~~pi~eri~~la~r~~~w~~Lr~k~n~eKkVAiil~nyP~~~~~ig~a~gLDvp~Sl~~iL~~L~~~GY~v~~lP~~ 422 (1244)
T PRK05989 343 VVEYVPDPERIDFVAGLARRWARLRRKPNADKRVALILANYPTKDGRIGNAVGLDTPASAVRLLRALRAAGYDVGDLPAD 422 (1244)
T ss_pred cceeeeCHHHHHHHHHHHHHHHHHccCChhHCEEEEEecCCCCCCCcceecccCChHHHHHHHHHHHHHCCCCCCCCCCC
Confidence 23678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc--ccccCCCCc--ccccccCHHHHhhhh-----HHHHHHHHHhCCCCCCCCCC--CCeEEEeeeeecc
Q 001237 546 SEALIEEIIHDK--EAQFSSPNL--NIAYKMGVREYQSLT-----PYATALEENWGKPPGNLNSD--GENLLVYGKQYGN 614 (1117)
Q Consensus 546 ~~~L~~~ll~~~--~~~~~~~~~--~~~~~~~~~~Y~~~~-----~~~~~i~~~WG~pPG~~~~~--g~~~~I~G~~fGN 614 (1117)
+++|+++|+.++ ...|.+.+. .....+|+++|++|+ ..|++|+++||+|||++|++ +++|+|||++|||
T Consensus 423 ~~eL~~~l~~~g~n~~~w~~~~~~~~~~~~~~~~~Y~~wf~~LP~~~r~~v~~~WG~ppg~~m~~~~~~~~~Ipgi~~GN 502 (1244)
T PRK05989 423 GDALIHALLLAGGTNDFWLTGEQLRGAAQSLPLADYRAWFATLPEEVRDEVTERWGPPPGDPYVREGDGRFVIPGLRFGN 502 (1244)
T ss_pred HHHHHHHHHhcCCCCcccCchhhhcCccccCCHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCccccCCCeEEEeeEeECC
Confidence 999999888653 356766533 345679999999995 37999999999999999997 5779999999999
Q ss_pred EEEEeCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCCe
Q 001237 615 VFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPN 694 (1117)
Q Consensus 615 VfIgvQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPn 694 (1117)
|||||||+|||++|++++||||++||||||+|||+||+++|+|||||||||||||||||||++|||++||||+|||+|||
T Consensus 503 V~v~~QP~RG~~~d~~~~yHd~~lpP~HqYlAfY~WL~~~f~ADAiIH~GtHGtlEwLPGK~vgLS~~c~Pd~llgdlP~ 582 (1244)
T PRK05989 503 VFVGIQPPRGYGGDPVAIYHDPDLPPPHHYLAFYLWLREGFGADAVVHVGKHGNLEWLPGKSVGLSADCYPDAALGDLPH 582 (1244)
T ss_pred EEEEeCCCcccCCCchhhhcCCCCCCChhHHHHHHHHHhhcCCCEEEECCCCcccccCCCccccCCcccChHHHhCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHHcCCccc
Q 001237 695 VYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK--DTGRGPQIVSSIISTAKQCNLDKD 772 (1117)
Q Consensus 695 iYpYivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~--~~~~~~~l~~~I~e~a~~~~L~~d 772 (1117)
||||||||||||+||||||+|||||||||||++||||++|++|++||+||+++. ++.+++.+++.|+++++++||++|
T Consensus 583 iYpYivnnpGEg~qAKRR~~AviIdHLtPP~~~aglyg~l~~Le~li~eY~~a~~~d~~~~~~l~~~I~~~~~~~~l~~d 662 (1244)
T PRK05989 583 LYPFIVNDPGEGTQAKRRAQAVIIDHLTPPMTRAELYGDLADLEQLIDEYYEAAALDPRRLPALREQILELVRAANLDRD 662 (1244)
T ss_pred EEEEECCCcchHHHHHHcccceecccCCCCcccccccHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHcCChhh
Confidence 999999999999999999999999999999999999999999999999999865 667889999999999999999999
Q ss_pred CCCCcccccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCc--ccccchhHHHHHHh
Q 001237 773 VELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPE--DEIASLPSILAETV 850 (1117)
Q Consensus 773 l~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~--~~~~sL~~~la~~~ 850 (1117)
++++... +.+++++++++||+||||||+++||+||||||++|++|++++++.+|+++++.. ++.+||++++++.+
T Consensus 663 l~~~~~~---~~~~~~~~l~~l~~yL~elk~~~i~~GLHifG~~p~~e~l~~~v~a~~r~~~~~~~~~~~~l~~~la~~~ 739 (1244)
T PRK05989 663 LGLSEAP---DEDDFDDFLLHLDGYLCELKEAQIRDGLHIFGEAPEGEQRVDLVLAILRAPQGDGEGARPGLRRALALDL 739 (1244)
T ss_pred cCccccc---ccccHHHHHHHHHHHHHHHHhhhcCCCceecCCCCChHHHHHHHHHHHhccccccccccccHHHHHHHhc
Confidence 9875432 225688899999999999999999999999999999999999999999887533 45789999999999
Q ss_pred CCC---hhhhhcCCCCCcc---------cHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhh
Q 001237 851 GRD---IEDIYRGSDKGIL---------KDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQ 918 (1117)
Q Consensus 851 g~d---~~~l~~~~~~~~~---------~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~ 918 (1117)
+++ +.+.+.+.....+ +..+..++++..++..+.... ...+
T Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-- 792 (1244)
T PRK05989 740 GLDACDLAEPWTGPRPAALLALDDAPWRTAGDTVERLEVLAAELVEALE-------------------------PAGW-- 792 (1244)
T ss_pred CcchhhhhhhhccccchhhhhhccccccchhHHHHHHHHHHHHHHhhhc-------------------------cccc--
Confidence 776 3333322211110 011122223222222221100 0000
Q ss_pred hhcccccccccHHHHHHHHHHHHHHHHhh-cchhHHHHHHhhhCCCccCCCCCCCCCC-CCCCCCCCCcccccCCCCCCC
Q 001237 919 YLSNTKFYRADRATLRTLFEFVGECLKLV-VADNELGSLKQALEGKYVEPGPGGDPIR-NPKVLPTGKNIHALDPQAIPT 996 (1117)
Q Consensus 919 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~El~~LL~aL~G~YI~PgpgGdp~R-~pdvLPTGRNfys~DP~~iPT 996 (1117)
......+.........++ .+++|+++||+||+|+||||||||||+| ||||||||||||+|||++|||
T Consensus 793 -----------~~~~~~l~~~~~~~~~~l~~s~~E~~~Ll~aL~G~yI~pGpgGdP~Rg~pdvLPTGRNfys~Dp~~iPT 861 (1244)
T PRK05989 793 -----------DPTAAVLEFAATELVPRLAATPDEIEQLLRGLDGRFVPPGPSGAPTRGRPDVLPTGRNFYSVDPRAVPT 861 (1244)
T ss_pred -----------hhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhCCcccCCCCCCccccCCCCCCCCCCcccCcCcccCCC
Confidence 001111122222233333 3468999999999999999999999999 799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeC-CCCCcceeEEecccccCC
Q 001237 997 TAAMQSAKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSD-TFGRVNRVEPVSLEELGR 1075 (1117)
Q Consensus 997 ~aAw~~G~~lAe~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd-~~GrV~g~ElIPL~ELgR 1075 (1117)
++||++|+++|++||++|++ +||+|||+|||+|||||||||+|++||||||||||||||| ++|||+|+|+|||+||||
T Consensus 862 ~aAw~~G~~lA~~ll~~y~~-e~G~yPe~va~~lWgt~tmRt~G~~iAqiL~LLGVrPvWd~~~grV~g~evIPl~eLgR 940 (1244)
T PRK05989 862 RAAWELGQKLAEQLLERYLQ-EHGEYPRSVGLSVWGTSTMRTGGDDIAQALALLGVRPVWDEASRRVTGLEIIPLAELGR 940 (1244)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCceeEEEEEchHhhhhCCHHHHHHHHHcCCCccccCCCCCccceEEeCHHHcCC
Confidence 99999999999999999975 5699999999999999999999999999999999999999 699999999999999999
Q ss_pred CcceEEEecCchhhhhHHHHHHHH-------HhccCCCCCCcchhccc
Q 001237 1076 PRIDVVVNCSGVFRDLFINQVLFT-------VAISCPTELPICTVCYL 1116 (1117)
Q Consensus 1076 PRIDVvv~iSGiFRD~Fp~~i~Ll-------a~~~~~~~~~~~~~~~~ 1116 (1117)
|||||||||||||||+||++|+|| |+|+||.|+||||||+.
T Consensus 941 PRIDVtvriSG~fRD~fp~~i~LlD~Av~~va~ldEp~e~N~vr~h~~ 988 (1244)
T PRK05989 941 PRIDVTLRISGFFRDAFPNVIALFDDAVRAVAALDEPDEDNPVRAHVR 988 (1244)
T ss_pred CCeeEEEEecchhHhhHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 999999999999999999999986 89999999999999985
No 7
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=100.00 E-value=2.1e-223 Score=2079.65 Aligned_cols=820 Identities=42% Similarity=0.741 Sum_probs=737.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHHHhccCCCCccccCCCCCC
Q 001237 241 LQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRKDTNEKLKGPDAP 320 (1117)
Q Consensus 241 ~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p 320 (1117)
++||.+||.+|++|||+||+++|+ +...+++||+++|+.|||||+.+.+|+++++|++||..+.. +++++|
T Consensus 2 ~~Y~~~GG~eN~~nll~yL~~~~~----g~~~~~~~P~~~P~~GiYhPd~~~~f~~~~eYl~w~~~~~~-----~~~~~P 72 (1098)
T PF02514_consen 2 YAYWRYGGPENLENLLRYLANEYL----GGDYPVEPPVPLPWNGIYHPDAGRVFESLEEYLAWYRKRGR-----YDPNRP 72 (1098)
T ss_pred chHHHCccHHHHHHHHHHHHHHhc----CCCCCCCCChhccceEEEeeccccccCCHHHHHHHHhhhcc-----cCCCCC
Confidence 589999999999999999999987 56778999999999999999999999999999999986532 468899
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCC-CCCchhhhhhhccccCCCcceeEEEecccccccCCCCCC
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGG-LDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~g-l~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~ 399 (1117)
||||+|||+|+.+||++++|+||++||++|+||+|||+.+ .+....+++||.+ +++++||+|||+++|++++++.++
T Consensus 73 ~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~--~g~~~vDaIIn~~~f~l~~~~~~~ 150 (1098)
T PF02514_consen 73 TVGILFYRSYWLSGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMD--DGKPRVDAIINLTGFSLGGGPAGG 150 (1098)
T ss_pred EEEEEeehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhh--cCCCCceEEEEcCccccCCCCcch
Confidence 9999999999999999999999999999999999999987 5556779999987 588999999999999999987643
Q ss_pred CchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEeecCC--C----Cccccch
Q 001237 400 DHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPR--T----GKAHALH 473 (1117)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~~~~--~----~~~~pip 473 (1117)
++++|++|||||||+++++++|.++|++|++||+|.+++|+|+||||||+|+|+++|+++.. + ..++|||
T Consensus 151 ----~~~~L~~LnVPVlq~i~~~~~t~eeW~~S~~GL~~~e~~~~ValPE~DG~I~pivia~~~~d~~~g~~~~~~~PIp 226 (1098)
T PF02514_consen 151 ----AIELLKELNVPVLQAITLYYQTREEWEESPQGLSPMEVAMQVALPEFDGAIEPIVIAGKEPDPETGFEVREYVPIP 226 (1098)
T ss_pred ----hHHHHHHCCCCEEEeeccCCCCHHHHHhCCCCCCHHHHHHHhhhhhhccccceEEEEEeecCcccCccceeEEECH
Confidence 67899999999999999889999999999999999999999999999999999999998652 2 2578999
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q 001237 474 KRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEI 553 (1117)
Q Consensus 474 eRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~P~~~~~L~~~l 553 (1117)
|||+++|+||++|++||+|||+||||||||||||||++|||+|+|||||+||.+||++||++||+|+++|+|+++|++.|
T Consensus 227 erI~~la~ra~~W~~LR~kpN~eKKVAII~yNyPpg~~nIGaA~gLDvp~Sl~~IL~~Lke~GY~v~~iP~s~~eL~~~l 306 (1098)
T PF02514_consen 227 ERIERLADRAKRWARLRRKPNAEKKVAIIYYNYPPGKGNIGAAAGLDVPESLVNILKALKEEGYDVGEIPESGEELIDLL 306 (1098)
T ss_pred HHHHHHHHHHHHHHHHhcccccccEEEEEEecCCCCCCcccccCCCCcHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred Hhcc--ccccCCCCcc-----cccccCHHHHhhhhH-----HHHHHHHHhCCCCCCCCCC----CCeEEEeeeeeccEEE
Q 001237 554 IHDK--EAQFSSPNLN-----IAYKMGVREYQSLTP-----YATALEENWGKPPGNLNSD----GENLLVYGKQYGNVFI 617 (1117)
Q Consensus 554 l~~~--~~~~~~~~~~-----~~~~~~~~~Y~~~~~-----~~~~i~~~WG~pPG~~~~~----g~~~~I~G~~fGNVfI 617 (1117)
+++. +.+|.+.... .+..+|+++|++|+. .|++|+++||+|||++|+. +++|+|||++||||||
T Consensus 307 ~~g~~~~~~a~~~~~~l~~~~~~~~lp~~~Y~~Wf~~LP~~~r~~v~~~WG~ppg~~mv~~~~~~~~~vIpgi~~GNV~i 386 (1098)
T PF02514_consen 307 LQGRNNGPWAPGELEKLVKSGDAVLLPLEEYLAWFAELPEELRQEVEERWGEPPGDIMVYEDNGGGYFVIPGIRFGNVFI 386 (1098)
T ss_pred HhcccCCcccCCcchhhhcccccccCCHHHHHHHHHhcCHHHHHHHHHhcCCCccCCcceecccCCEEEEEeeeeCCEEE
Confidence 9432 2333332211 245789999999963 6999999999999999987 7789999999999999
Q ss_pred EeCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCCeeeE
Q 001237 618 GVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYY 697 (1117)
Q Consensus 618 gvQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniYp 697 (1117)
+|||+|||++|++++|||+++||||||+|||+||+++|+|||||||||||||||||||++|||.+||||+||||||||||
T Consensus 387 ~~QP~RG~~~d~~~lyHd~~lpP~HqYlAfY~wl~~~f~ADAviH~GtHGtlEwLPGK~~gLS~~c~PdiligdlP~iYp 466 (1098)
T PF02514_consen 387 GPQPPRGWEEDPMKLYHDPDLPPPHQYLAFYLWLQEVFGADAVIHVGTHGTLEWLPGKEVGLSASCWPDILIGDLPNIYP 466 (1098)
T ss_pred EeCCCCCcCCCcchhhcCCCCCcCchHHHHHHHHHhhcCCCEEEEecCccccccCCCccccCCcccCHHHHHhcCCEEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhc--cCCCCchHHHHHHHHHHHHcCCcccCCC
Q 001237 698 YAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSL--KDTGRGPQIVSSIISTAKQCNLDKDVEL 775 (1117)
Q Consensus 698 YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~--~~~~~~~~l~~~I~e~a~~~~L~~dl~~ 775 (1117)
|||||||||+||||||+|||||||||||++||||++|++|+++|++|+++ .++.+++.+++.|+++|+++||++|+++
T Consensus 467 Yiv~npgEg~~AKRR~~AviI~HltPp~~~agly~~l~~L~~li~eY~~a~~~~~~~~~~~~~~I~~~a~~~~l~~dl~l 546 (1098)
T PF02514_consen 467 YIVNNPGEGTQAKRRGYAVIIDHLTPPMTRAGLYGELAELEELIDEYREARQEDPARKEALREEILELARKLGLDKDLGL 546 (1098)
T ss_pred EecCCcchHHHHHhhccCeecCCCCCccccCCCcHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHcCCccccCC
Confidence 99999999999999999999999999999999999999999999999987 5778899999999999999999999987
Q ss_pred CcccccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCc-ccccchhHHHHHHhCCCh
Q 001237 776 PDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPE-DEIASLPSILAETVGRDI 854 (1117)
Q Consensus 776 ~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~-~~~~sL~~~la~~~g~d~ 854 (1117)
+... .++|++++++||+||+||++++||+||||||++|++|++++++.+|++.+... +..++|++.++...|++-
T Consensus 547 ~~~~----~~~~~~~l~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~v~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 622 (1098)
T PF02514_consen 547 DRAD----DEDFDEFLERLHDYLCELKESQIPDGLHVFGEPPEGEELVEMVAAILRFPNYAAGEVPSLREAIAEDLGLDD 622 (1098)
T ss_pred cccc----cccHHHHHHHHHHHHHHHHhcccCCCceeCCCCCChHHHHHHHHHHhcCCcccccccCCHHHHHHHHcCCcc
Confidence 6532 24789999999999999999999999999999999999999999999887433 457899999999998871
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhcccccccccHHHHH
Q 001237 855 EDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATLR 934 (1117)
Q Consensus 855 ~~l~~~~~~~~~~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 934 (1117)
....+.++.+++.+++.+............. .. .........+.
T Consensus 623 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------~~~~~~~~~~~ 666 (1098)
T PF02514_consen 623 -----------ETDADALELLEELARELVSPEVAQGKVLGPS-----------------ES--------PEEAEDDDELR 666 (1098)
T ss_pred -----------chhHHHHHHHHHHHHHhhhhhhhhccccccc-----------------cc--------ccccchhhHHH
Confidence 2234556666666666655443321111000 00 00000112455
Q ss_pred HHHHHHHHHHHhh-cchhHHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 001237 935 TLFEFVGECLKLV-VADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIER 1013 (1117)
Q Consensus 935 ~~~~~l~~~~~~~-~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lAe~lL~~ 1013 (1117)
.++....+...++ ++++|+++||+||+|+||||||||||+|||||||||||||+|||++|||++||++|+++||++|++
T Consensus 667 ~~~~~~~~~~~~l~~~~~E~~~ll~aL~G~yv~pg~~gdp~r~~~vlPTGrN~y~~Dp~~iPt~~A~~~G~~la~~ll~~ 746 (1098)
T PF02514_consen 667 ALLEIARDYRPRLRSTTNEIDALLRALNGRYVPPGPGGDPIRNPDVLPTGRNFYSFDPRKIPTPAAWEVGKKLAEQLLER 746 (1098)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhCCcccCCCCCCCcccCCccCCCCCcccccCcccccCHHHHHHHHHHHHHHHHH
Confidence 5566666666666 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchhhhhHH
Q 001237 1014 QKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFI 1093 (1117)
Q Consensus 1014 y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp 1093 (1117)
|++ +||+|||+|||||||+|||||+|++|||||||||||||||++|||+|+|+|||+|||||||||||++||+|||+||
T Consensus 747 y~~-~~g~yPe~v~~vlW~~~t~rt~G~~~aqil~llGv~Pvw~~~grv~~~e~iPl~eL~RPRIDV~~~~sG~fRD~fp 825 (1098)
T PF02514_consen 747 YRE-EHGRYPEKVAFVLWGTETMRTGGEDIAQILYLLGVRPVWDSSGRVSGVELIPLEELGRPRIDVVVRISGLFRDAFP 825 (1098)
T ss_pred HHH-hcCCCCceeEEEEEecchhhcCCHHHHHHHHhcCceeccCCCCCCCCceeccHHHcCCCCeeEEEecchhhHHHhH
Confidence 975 5699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-------HhccCCCCCCcchhccc
Q 001237 1094 NQVLFT-------VAISCPTELPICTVCYL 1116 (1117)
Q Consensus 1094 ~~i~Ll-------a~~~~~~~~~~~~~~~~ 1116 (1117)
++|+|| |+|+||.++||||||+.
T Consensus 826 ~~~~lld~Av~~~a~~dE~~~~N~v~~h~~ 855 (1098)
T PF02514_consen 826 NLIELLDRAVRLVAALDEPEEMNYVRKHSL 855 (1098)
T ss_pred HHHHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 999976 88999999999999985
No 8
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=100.00 E-value=8.8e-217 Score=2005.47 Aligned_cols=822 Identities=29% Similarity=0.507 Sum_probs=714.6
Q ss_pred CCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhh-cCCEEEEeccccHHHHHHHH
Q 001237 74 LPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLE-NANIFIGSLIFVEELALKIK 152 (1117)
Q Consensus 74 ~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~adi~~~sllf~~~~~~~~~ 152 (1117)
.++-.+|+++.-.+..+++++|.+.+..++| ++..++...++++.+++.+.+.+. .|++||..+|++.....--.
T Consensus 22 q~pa~~v~ls~~dsdl~~l~~a~~~~~~~~~----~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~~lGg~~~w~yg~ 97 (1122)
T TIGR02257 22 QTPADIVFLSSADSDLALLAAAWKALPDDLP----SLRLANLDNLQHPASVDLYVDSTARKAKIIVVRLLGGRGYWSYGL 97 (1122)
T ss_pred CCCccEEEEEeccchHHHHHHHHHHhhcCCc----ceEecChhhcCCHHHHHHHHHHHhccCcEEEEECCCCchhhHHHH
Confidence 3444688888888999999999987764444 566778899999999888888554 44599999998777522111
Q ss_pred HHHHHhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhhcCCCcHHHHHHHHHhCCCeEEEcCCCChh
Q 001237 153 AAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKAQ 232 (1117)
Q Consensus 153 ~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lpg~~~~ 232 (1117)
+.+. ++++..++.+.++||+..+
T Consensus 98 e~l~---------------------------------------------------------~~~~~~~~~l~~~~g~~~~ 120 (1122)
T TIGR02257 98 EQLQ---------------------------------------------------------AWAEERGRQLILLPGDDDP 120 (1122)
T ss_pred HHHH---------------------------------------------------------HHHHhcCCeEEEeCCCCCc
Confidence 1111 2222222333333333333
Q ss_pred hHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHH
Q 001237 233 DAR----------LYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLN 302 (1117)
Q Consensus 233 d~~----------~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~ 302 (1117)
|.+ .+...++||.+||.+|++|||+||+..+. ....+.+|+++|+.|||||+.+ +
T Consensus 121 d~~l~~~st~~~~~~~~l~~Y~~~GG~~N~~~~l~~l~~~~~-----~~~~~~~p~~~p~~giyhp~~~----------~ 185 (1122)
T TIGR02257 121 DLELNELSTVPLDLSDRLWKYLREGGPENMGRFLDCLAALLT-----QDEAPVPPKAIPKAGYYDPGRG----------V 185 (1122)
T ss_pred ChhhHhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----CCCCCCCCcccCccCccCCCcc----------c
Confidence 333 44556899999999999999999988764 2456799999999999999854 2
Q ss_pred HhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCccee
Q 001237 303 WYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVN 382 (1117)
Q Consensus 303 Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vD 382 (1117)
||. +++|+|||+|||+|+++||++++|+||++||++|+||+|||++|++. ..+.++|.+. .++..||
T Consensus 186 ~~~-----------~~~p~vgilfyr~~~~~~~~~~idali~~Le~~G~~~ipvf~~sl~~-~~~~~~~~~~-~~~~~vd 252 (1122)
T TIGR02257 186 WPL-----------EKGPRVGILFYRSLLLAGDTALIEALIDALRQRGLNPVPIFVSSLKD-PAVQAGLLDA-LKEEDPA 252 (1122)
T ss_pred ccc-----------CCCCEEEEEEehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEeCCCCc-hhHHHHHHHh-ccCCCCc
Confidence 652 34699999999999999999999999999999999999999999864 3445555542 3567899
Q ss_pred EEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEee
Q 001237 383 SAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGR 462 (1117)
Q Consensus 383 aiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~ 462 (1117)
+|||+|+|+++... .+.++++|+++||||||++. ++++.++|++|++||+|.+++|+|+||||||+|+|++++++
T Consensus 253 ~iin~~~F~~~~~~----~~~~~~~l~~l~vPVlq~i~-~~~s~~~W~~s~~Gl~~~d~~~~ValPE~DG~I~~~~i~~k 327 (1122)
T TIGR02257 253 LIITTTGFASSNEQ----ADNGETLWDSLGVPVLQVIS-SNTSREVWEDSSRGLAPRDLAMHVVLPELDGRITTRAISFK 327 (1122)
T ss_pred EEEECCcccccCCc----chhhHHHHHHCCCCEEEeec-CCCCHHHHHhCCCCCCHHHHHHheechhhCCcceeEEEEee
Confidence 99999999985431 22367899999999999997 57999999999999999999999999999999999999976
Q ss_pred cCC-----C----CccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHH
Q 001237 463 DPR-----T----GKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQ 533 (1117)
Q Consensus 463 ~~~-----~----~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk 533 (1117)
... + ..+.|+||||+++|+|+++|++||+|||+|||||||||||||+++++|+|+|||||+|+++||++||
T Consensus 328 ~~~~~d~~~~~~~~~~~pi~eri~~~a~r~~~W~~Lr~~pn~eKriAiil~nyP~~~~~ig~a~gLD~p~Sl~~iL~~Lk 407 (1122)
T TIGR02257 328 GVSDVDPALESAITTYRPDPDRIKWVADLAANWIKLQRKPNAERRIALVLANYPVRDGRIGNGVGLDTPASVVNILHALK 407 (1122)
T ss_pred ecccCCcccccccceeeeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCcCccceecCCChHHHHHHHHHHHH
Confidence 421 1 2578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCC--CCCCHHHHHHHHHhccccccCCCCcccccccCHHHHhhhhH-----HHHHHHHHhCCCCCCCCCCCC-eE
Q 001237 534 RDGYNVEG--LPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTP-----YATALEENWGKPPGNLNSDGE-NL 605 (1117)
Q Consensus 534 ~~GY~v~~--~P~~~~~L~~~ll~~~~~~~~~~~~~~~~~~~~~~Y~~~~~-----~~~~i~~~WG~pPG~~~~~g~-~~ 605 (1117)
++||+|++ +|+|+++|+++|+.+....+..........+|+++|++|+. .|++|+++||+|||+.|++++ .|
T Consensus 408 ~~GY~v~~~~lP~~~~~L~~~l~~~~~n~~~~~~~~~~~~l~~~~Y~~wf~~LP~~~r~~v~~~WG~ppg~~mv~~~~~~ 487 (1122)
T TIGR02257 408 EQGYDLGGGPIPSNGDALIRLLIRGRTNDLESHDREPLDKLSLDEYLTFWDTLPLKAKQEIVLRWGEPSQDPDLEDKKGF 487 (1122)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccccCCHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCccCCCCeE
Confidence 99999998 89999999999997654332221112245699999999953 799999999999999998644 59
Q ss_pred EEeeeeeccEEEEeCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcc
Q 001237 606 LVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYP 685 (1117)
Q Consensus 606 ~I~G~~fGNVfIgvQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwP 685 (1117)
+|||++||||||||||+|||++|++++||||++||||||+|||+|||++|+|||||||||||||||||||++|||++|||
T Consensus 488 ~ipgi~~GNv~v~~QP~RG~~~d~~~~yHd~~lpP~H~YlAfY~Wl~~~f~ADAiIH~GtHGtlEwLPGK~vgLS~~c~P 567 (1122)
T TIGR02257 488 PINGLRFGNIFVLIQPDRGYDIDPIADYHSPDLAPPHRYLAFYFWLRKVFGADAIVHVGKHGTLEWLPGKGVGLSETCFP 567 (1122)
T ss_pred EEeeeeECCEEEEeCCCcccCCCchHhhcCCCCCCCchHHHHHHHHHhhcCCCEEEECCCCcCcccCCCccccCCcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCeeeEEecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHH
Q 001237 686 DSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK--DTGRGPQIVSSIIST 763 (1117)
Q Consensus 686 d~liGdlPniYpYivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~--~~~~~~~l~~~I~e~ 763 (1117)
|+|||+|||||||||||||||+||||||+|||||||||||++||||++|++|++||+||+++. ++.+++.+++.|+++
T Consensus 568 d~lig~lP~iYpyivnnpGEg~qAKRR~~AviIdHLtPP~~~a~lyg~l~~Le~lideY~~a~~~d~~r~~~l~~~I~~~ 647 (1122)
T TIGR02257 568 EIVLGPLPHIYPFIVNDPGEGAQAKRRTHAVILDHLTPPLTRAGLYGPLHDLERLLDEYYEADLLDRRRLDILERQILDL 647 (1122)
T ss_pred HHHhCCCCEEEEEeCCCcchHHHHHhcccceeeccCCCCcccccccHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999764 566788999999999
Q ss_pred HHHcCCcccCCCCcccccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCcccccchh
Q 001237 764 AKQCNLDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLP 843 (1117)
Q Consensus 764 a~~~~L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~~~~~sL~ 843 (1117)
++++||++|++++.. +++++++++||+||||||+++||+||||||++|+.+..
T Consensus 648 ~~~~~l~~dl~~~~~------~~~~~~l~~l~~yL~elk~~~i~~GLHvfG~~p~~~~~--------------------- 700 (1122)
T TIGR02257 648 IQDLGLDSEIGVDRS------DKPDSALERLDAYLCDLKESQIRDGLHIFGRAPDDLSD--------------------- 700 (1122)
T ss_pred HHHcCCccccCCCcc------ccHHHHHHHHHHHHHHHHhhhcCCCCeeCCCCCcchhh---------------------
Confidence 999999999987542 25778999999999999999999999999999985310
Q ss_pred HHHHHHhCCChhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhccc
Q 001237 844 SILAETVGRDIEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNT 923 (1117)
Q Consensus 844 ~~la~~~g~d~~~l~~~~~~~~~~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~ 923 (1117)
+ . +
T Consensus 701 --------------------------~-----------~---~------------------------------------- 703 (1122)
T TIGR02257 701 --------------------------A-----------P---W------------------------------------- 703 (1122)
T ss_pred --------------------------H-----------H---H-------------------------------------
Confidence 0 0 0
Q ss_pred ccccccHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhCCCccCCCCCCCCCC-CCCCCCCCCcccccCCCCCCCHHHHHH
Q 001237 924 KFYRADRATLRTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIR-NPKVLPTGKNIHALDPQAIPTTAAMQS 1002 (1117)
Q Consensus 924 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R-~pdvLPTGRNfys~DP~~iPT~aAw~~ 1002 (1117)
..++++|+++||+||+|+||||||||||+| ||||||||||||+|||++|||++||++
T Consensus 704 ----------------------~~~~~~E~~~ll~aL~G~yV~pGp~G~P~Rg~pdvLPTGRNfys~Dpr~iPT~aAw~~ 761 (1122)
T TIGR02257 704 ----------------------RQSTEAEIAGLLAGLNGRYVSAGPSGAPTRGRPDVLPTGRNFYSVDLRGLPTPAAWDL 761 (1122)
T ss_pred ----------------------HhccHHHHHHHHHHhCCceeCCCCCCCcccCCCCCCCCCCcccccCcccCCCHHHHHH
Confidence 001357999999999999999999999999 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCC-CCCcceeEEecccccCCCcceEE
Q 001237 1003 AKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDT-FGRVNRVEPVSLEELGRPRIDVV 1081 (1117)
Q Consensus 1003 G~~lAe~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~-~GrV~g~ElIPL~ELgRPRIDVv 1081 (1117)
|+++||+||++|++ +||+|||+|||+||||+||||+|++|||||||||||||||+ +|||+|+|+|||+||||||||||
T Consensus 762 G~~lAe~ll~~y~~-ehG~yPe~va~~lWgt~tmRt~Ge~iAqiL~LlGVrPvWd~~~grV~g~eiIPl~eLgRPRIDVt 840 (1122)
T TIGR02257 762 GKKSAEQLIERYLQ-DHGDWPRSLALSVWGTATMRTGGEDIAQALALLGVRPVWDGASRRVIDLEVIPLSLLGRPRVDVT 840 (1122)
T ss_pred HHHHHHHHHHHHHH-hcCCCCceEEEEEEchHhhhhCCHHHHHHHHHcCCCccccCCCCcccceEEeCHHHcCCCCeeEE
Confidence 99999999999975 56999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred EecCchhhhhHHHHHHHH-------HhccCCCCCCcchhccc
Q 001237 1082 VNCSGVFRDLFINQVLFT-------VAISCPTELPICTVCYL 1116 (1117)
Q Consensus 1082 v~iSGiFRD~Fp~~i~Ll-------a~~~~~~~~~~~~~~~~ 1116 (1117)
|||||||||+||++|+|| |+|+||.|+|||||||.
T Consensus 841 vriSG~fRD~Fp~~i~LlD~Av~~vA~ldEp~e~N~v~~~~~ 882 (1122)
T TIGR02257 841 LRISGLFRDAFPNLIALVDKAVQAVAQLDEPDELNPLAARTR 882 (1122)
T ss_pred EEechhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHhhh
Confidence 999999999999999976 89999999999999986
No 9
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=100.00 E-value=2.6e-214 Score=1980.55 Aligned_cols=810 Identities=27% Similarity=0.427 Sum_probs=705.7
Q ss_pred CCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcCC-EEEEeccccHHHHHHH
Q 001237 73 NLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENAN-IFIGSLIFVEELALKI 151 (1117)
Q Consensus 73 ~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad-i~~~sllf~~~~~~~~ 151 (1117)
+.++-.+|+++.-.+..+++++|.+....++| ++..++...+++|.+.+.+.+.+.++| +||..+|++.+...--
T Consensus 21 ~q~pA~~v~ls~~ds~l~~l~~a~~~~~~~~p----~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~llGg~~~w~yg 96 (1100)
T PRK12321 21 GQSPADLVVLSFSDSDLGALAAAWAAAGGGLP----SLRLANLAALRHPMSVDLYVEQVLAGAKAVLIRLLGGLDYWRYG 96 (1100)
T ss_pred CCCCcCEEEEEcCcchHHHHHHHHHhcccCCc----ceeecChhhcCCHHHHHHHHHHHhccCcEEEEEcCCCchhhHHH
Confidence 33444678888888999999888853323333 566778999999999998888555555 9999998877642211
Q ss_pred HHHHHHhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhhcCCCcHHHHHHHHHhCCCeEEEcCCCCh
Q 001237 152 KAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKA 231 (1117)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lpg~~~ 231 (1117)
. +++.++++..++.|.++||+..
T Consensus 97 ~---------------------------------------------------------e~~~~~~~~~~~~l~~l~g~~~ 119 (1100)
T PRK12321 97 L---------------------------------------------------------ERLAALARARGIALAVLPGDGR 119 (1100)
T ss_pred H---------------------------------------------------------HHHHHHHHhcCCEEEEECCCCC
Confidence 1 1222233333344444455544
Q ss_pred hhHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHH
Q 001237 232 QDAR----------LYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYL 301 (1117)
Q Consensus 232 ~d~~----------~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~ 301 (1117)
+|.+ .+..+++||.+||.+|++|||+||...|. +....+++|+++|+.|||||+.+..+ ..+
T Consensus 120 ~d~~l~~~st~~~~~~~~l~~Y~~~GG~~N~~~ll~~l~~~~~----~~~~~~~~p~~~p~~giyhp~~~~~~--~~~-- 191 (1100)
T PRK12321 120 PDPRLDALSTLPVSTLRRLDAYCRAGGPVNAQAALAQLALAAG----LYAGPVAPPKALPRGGFYCPGRGVVA--LPT-- 191 (1100)
T ss_pred cChhhHhcCCCCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhC----CCCCCCCCCcccCCcceeCCCCcccc--ccc--
Confidence 4444 34556999999999999999999987653 22223489999999999999965322 111
Q ss_pred HHhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcce
Q 001237 302 NWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMV 381 (1117)
Q Consensus 302 ~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~v 381 (1117)
.| ...++|+|||+|||+|+++||++++|+||++||++|+||+|||++|++. ....++|.+. .++..|
T Consensus 192 ~~-----------~~~~~p~vgilfyr~~~~~~~~~~idali~~Le~~G~~~ipvf~~~l~~-~~~~~~~~~~-~~~~~~ 258 (1100)
T PRK12321 192 AC-----------AGADAPLALVLFYRSYLLAADTAPVDALAAALRARGFAAVGLFVPSLKD-PEAAAWLRAA-LAALRP 258 (1100)
T ss_pred cc-----------cccCCCeEEEEEehhhhccCCcHHHHHHHHHHHHCCCEEEEEEeccccc-hhHHHHHHHh-ccCCCC
Confidence 11 1235799999999999999999999999999999999999999999874 2333444432 245679
Q ss_pred eEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEe
Q 001237 382 NSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAG 461 (1117)
Q Consensus 382 DaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~ 461 (1117)
|+|||+|+|++++.+ +.++|+++||||||++. ++++.++|++|++||+|.+++|+|+||||||+|+|+++++
T Consensus 259 d~iin~t~F~~~~~~-------~~~~l~~l~vPVlq~i~-~~~~~e~W~~s~~GL~~~d~~~~ValPE~DG~I~~~~i~~ 330 (1100)
T PRK12321 259 AAIVNATAFSARGDD-------GASPLDAADCPVFQVAL-ATARRAAWAASERGLSPADLAMHVVLPEVDGRLFAGPISF 330 (1100)
T ss_pred CEEEecCcccCCCcc-------hhhHHHHCCCCEEEEec-CCCCHHHHHhCCCCCCHHHhhhheehhhcCceeeeEEEEe
Confidence 999999999975422 34789999999999995 5799999999999999999999999999999999999997
Q ss_pred ecCC-----CC----ccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHH
Q 001237 462 RDPR-----TG----KAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDL 532 (1117)
Q Consensus 462 ~~~~-----~~----~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~L 532 (1117)
++.. ++ .+.|+||||+++|+|+++|++||+|||+|||||||||||||+++|+|+|+|||||+|+++||++|
T Consensus 331 k~~~~~d~~~~~~~~~~~pi~eRi~~~a~r~~~w~~Lr~k~n~eKrvAiil~nyP~~~~~ig~A~gLD~~~Sl~~iL~~L 410 (1100)
T PRK12321 331 KEEAARDPDLGFSRFAHRPDPARIAAVADRAAAWVRLARTPRAERRLALVLSDYPGRGGRAAHAVGLDAPASARAILADL 410 (1100)
T ss_pred ecccccCccccccccceeeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCccceecCcCcHHHHHHHHHHH
Confidence 6432 22 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHhccccccCCCCcccccccCHHHHhhhh-----HHHHHHHHHhCCCCCCCCCCCCeEEE
Q 001237 533 QRDGYNVEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLT-----PYATALEENWGKPPGNLNSDGENLLV 607 (1117)
Q Consensus 533 k~~GY~v~~~P~~~~~L~~~ll~~~~~~~~~~~~~~~~~~~~~~Y~~~~-----~~~~~i~~~WG~pPG~~~~~g~~~~I 607 (1117)
|++|| |+++|+|+++|+++|+.. ...+|+++|++|+ ..+++|+++||+|||++|+.+++|+|
T Consensus 411 ~~~GY-v~~~p~~~~~L~~~l~~~------------~~~~~~~~Y~~wf~~LP~~~~~~v~~~WG~ppg~~~v~~g~~~i 477 (1100)
T PRK12321 411 AAAGY-ATGAPPDAAALAARLTTP------------RLSWPLADYRAALATLPEELRAALTAAWGAPEADPACRDGAFRF 477 (1100)
T ss_pred HHCCC-CCCCCCCHHHHHHHHHhc------------cccCCHHHHHHHHHhCCHHHHHHHHHHhCCCCCCccccCCeEEE
Confidence 99999 999999999999999842 1258999999995 37999999999999999997778999
Q ss_pred eeeeeccEEEEeCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchh
Q 001237 608 YGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDS 687 (1117)
Q Consensus 608 ~G~~fGNVfIgvQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~ 687 (1117)
||++||||||||||+|||++|++++|||+++||||||+|||+||+++ +|||||||||||||||||||++|||++||||+
T Consensus 478 pgi~~GNv~v~~QP~RG~~~d~~~~yHd~~lpP~H~YlAfY~Wl~~~-~ADAiiH~GtHGtlEwLPGK~vgLS~~c~Pd~ 556 (1100)
T PRK12321 478 RALRAGHLLVALQPDRGRRADRKADYHDPARPPRHAYVAFYLWLREV-GVDALIHLGAHGTLEWLPGKAVALSPACWPEA 556 (1100)
T ss_pred EEEeECCEEEEcCCCcccCCCchHhhcCCCCCCChhHHHHHHHHhhc-CCCEEEECCCCcccccCCCccccCCcccChHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hcCCCCeeeEEecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHH
Q 001237 688 LIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK--DTGRGPQIVSSIISTAK 765 (1117)
Q Consensus 688 liGdlPniYpYivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~--~~~~~~~l~~~I~e~a~ 765 (1117)
|||+|||||||||||||||+||||||+|||||||||||++||||++|++|++||+||+++. ++.+++.+++.|+++++
T Consensus 557 lig~lP~iYpyivnnpgEg~qAKRR~~AviIdHLtPp~~~aglyg~l~~Le~li~eY~~a~~~d~~~~~~l~~~I~~~~~ 636 (1100)
T PRK12321 557 LTGALPVIYPFIVNDPGEAAQAKRRLGAVTLGHLPPPLAAAGLPPELARLERLVDEYSTADGLDPRRRDRLARAIRDEAR 636 (1100)
T ss_pred HhCCCCEEEEEECCCcchHHHHHhcccceecccCCCCCccccCcHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999864 56678899999999999
Q ss_pred HcCCcccCCCCcccccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCcccccchhHH
Q 001237 766 QCNLDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSI 845 (1117)
Q Consensus 766 ~~~L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~~~~~sL~~~ 845 (1117)
++||++|++++.. +++++++++||+||||||+++||+||||||++|+++++ .+
T Consensus 637 ~~~L~~dl~~~~~------~~~~~~l~~l~~yL~elk~~~i~~GLHvfG~~p~~~~~-----~~---------------- 689 (1100)
T PRK12321 637 AAGLEADAGLDAD------TPPAEALTRIDAFLCDLKESQFRDGLHVFGRAPAGAAE-----PV---------------- 689 (1100)
T ss_pred HcCCchhcCCCCc------cCHHHHHHHHHHHHHHHHhhhcCCCCeecCCCCChHHH-----Hh----------------
Confidence 9999999987542 35788999999999999999999999999999998863 00
Q ss_pred HHHHhCCChhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhccccc
Q 001237 846 LAETVGRDIEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKF 925 (1117)
Q Consensus 846 la~~~g~d~~~l~~~~~~~~~~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 925 (1117)
.
T Consensus 690 -----------------------------------------~-------------------------------------- 690 (1100)
T PRK12321 690 -----------------------------------------R-------------------------------------- 690 (1100)
T ss_pred -----------------------------------------h--------------------------------------
Confidence 0
Q ss_pred ccccHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhCCCccCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCHHHHHHHH
Q 001237 926 YRADRATLRTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRN-PKVLPTGKNIHALDPQAIPTTAAMQSAK 1004 (1117)
Q Consensus 926 ~~~~~~~l~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~-pdvLPTGRNfys~DP~~iPT~aAw~~G~ 1004 (1117)
.++++|+++||+||+|+||+|||||||+|| |||||||||||+|||++|||++||++|+
T Consensus 691 ---------------------~~~~~E~~~ll~aL~G~yV~pGp~G~P~Rg~~dvLPTGRNfys~Dp~~iPT~aAw~~G~ 749 (1100)
T PRK12321 691 ---------------------ASAEAERAALLAALDGRRVAPGPAGSPSRGRSDVLPTGRNLFTVDPRAVPTRAAHALGV 749 (1100)
T ss_pred ---------------------hccHHHHHHHHHHhCCceeCCCCCCCcccCCCCCCCCCCcccCcCcccCCCHHHHHHHH
Confidence 012479999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCC-CCCcceeEEecccccCCCcceEEEe
Q 001237 1005 VVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDT-FGRVNRVEPVSLEELGRPRIDVVVN 1083 (1117)
Q Consensus 1005 ~lAe~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~-~GrV~g~ElIPL~ELgRPRIDVvv~ 1083 (1117)
++||+||++|++ +||+|||+|||+||||+||||+|++|||||||||||||||. +|||+|+|+|||+||||||||||||
T Consensus 750 ~lAe~ll~~y~~-e~G~yPe~va~~lWgt~tmRt~G~~iAqiL~LlGVrPvwd~~~grV~g~eiIPl~eLgRPRIDVtvr 828 (1100)
T PRK12321 750 KAAEELLRRHLQ-DHGDWPRGLVMDLWGSATLRTGGEEFAMALALMGVRPVWDHASGRVTGIEVLPLALLDRPRIDVTLR 828 (1100)
T ss_pred HHHHHHHHHHHH-hcCCCCceEEEEEEchHhhhhCCHHHHHHHHHcCCcccccCCCCcccceEEeCHHHcCCCCeeEEEE
Confidence 999999999975 56999999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred cCchhhhhHHHHHHHH-------HhccCCCCCCcchhc
Q 001237 1084 CSGVFRDLFINQVLFT-------VAISCPTELPICTVC 1114 (1117)
Q Consensus 1084 iSGiFRD~Fp~~i~Ll-------a~~~~~~~~~~~~~~ 1114 (1117)
|||||||+|||+|+|| |+|+||.|+||||||
T Consensus 829 iSG~FRD~Fp~~i~LlD~Av~~vA~ldEp~e~N~vr~h 866 (1100)
T PRK12321 829 VSGLFRDVFPALIALFDQAARAVAAREEADEDNPLAAR 866 (1100)
T ss_pred ecchHHhhHHHHHHHHHHHHHHHHhCCCCcccCHHhhh
Confidence 9999999999999975 999999999999998
No 10
>COG1429 CobN Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-208 Score=1961.51 Aligned_cols=945 Identities=37% Similarity=0.606 Sum_probs=774.7
Q ss_pred CCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcCCEEEEeccccHHHH
Q 001237 69 ENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELA 148 (1117)
Q Consensus 69 ~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~adi~~~sllf~~~~~ 148 (1117)
........+++|+++....+...+..|.+.+..+...+... ....+..+.. +...+..+|+|+..++.....-
T Consensus 15 ~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~vi~~~~~~~~~~~ 87 (1388)
T COG1429 15 VAVSPQVPIKVVILSASSSDLLALAAAARFLPIDLISLDSL----ILGALQEEVS---LERVLSAADVILLRLLGGTSYW 87 (1388)
T ss_pred hhhcccCceEEEEEcCchhhHHHHHHhhhhhcccccchhhh----hccccccccc---hhhhhccCcEEEEecCCcchhh
Confidence 33455667889999999999999999999998886643332 2222222222 7778899999999999876554
Q ss_pred HHHHHHHHHhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhhcCCCcHHHHHHHHHhCCCeEEEcCC
Q 001237 149 LKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPS 228 (1117)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lpg 228 (1117)
.--.+.+++. .. ..++ +... ...++ . .+. .+
T Consensus 88 ~~~~~~~~a~-~~-~~~i--~~~~---------~~~~~-----~-------------------~~~----------~~-- 118 (1388)
T COG1429 88 PYGLELLAAL-AN-GFVI--PGDG---------VLPMD-----P-------------------ELK----------SL-- 118 (1388)
T ss_pred hhhhHHHHHh-cc-CcEe--cccc---------ccCCC-----c-------------------ccc----------cc--
Confidence 4333334433 11 1111 1110 00000 0 000 00
Q ss_pred CChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHHHhccCC
Q 001237 229 DKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRK 308 (1117)
Q Consensus 229 ~~~~d~~~~~~~~~Y~~~Gg~eN~~~ll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~ 308 (1117)
.--+.+++...+.||.+||.+|++||+.|+++.|.....+.+..+.+|...|..|||||+++.+|+++.+|++||...
T Consensus 119 -~t~~~~~~~~~~~y~~~gg~~N~~~ll~~l~~~~~~~~~~~~~~~~~p~~~~~~giyhP~~~~~~~~~~~yl~wy~~~- 196 (1388)
T COG1429 119 -STVDAEDYLRVYLYLSGGGVENLRNLLLYLADLYDDLADGIDYAYIEPVRPPKEGIYHPDAGEIFENLREYLDWYING- 196 (1388)
T ss_pred -cCcCHHHHhHHhhhhccCCcccHHHHHHHHHHhhcccccccccCccCcccCccceEEcCCCccccccHHHHHHHHhhc-
Confidence 111277888899999999999999999999997764444556677888877879999999999999999999999762
Q ss_pred CCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecc
Q 001237 309 DTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLT 388 (1117)
Q Consensus 309 ~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~t 388 (1117)
.+++++|||||+|||+|+.++|++++|+||++||+||+||||+|+.+.+.......+|.+ ++++.||+|||++
T Consensus 197 -----~~~~~~ptVgi~~~r~~~~~~~~~~idaLi~~le~rG~nvi~~f~~~~~~~~~~~~~~~~--~~~~~vdaii~l~ 269 (1388)
T COG1429 197 -----FYDPGAPTVGILFYRTYYTNGNLAPIDALIRALEERGLNVIPVFLSSDALYVVLRAFFLG--LEKVLVDAIISLT 269 (1388)
T ss_pred -----ccCCCCCEEEEEeeeeeeeccccHHHHHHHHHHHHCCCeeEEEEeecCCchhHHHHhhcc--ccccccceeeeeh
Confidence 368999999999999999999999999999999999999999999988743445555554 5678999999999
Q ss_pred cccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEeecCCC--
Q 001237 389 GFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRT-- 466 (1117)
Q Consensus 389 gF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~~~~~-- 466 (1117)
+|++++.+.+ ... .++|++|||||||+++++++++++|+.+..|+++.+++|+|+|||+||+|+|+++++++...
T Consensus 270 ~f~l~~~~~~-~~~--~~l~~~lnVPVl~~i~~~~~~~~~w~~~~~g~~~~~~~~~valPE~dG~i~~i~I~~~~~~~~~ 346 (1388)
T COG1429 270 GFALNGSPPR-GAV--EELLKRLNVPVLQAVVSSGTYREQWEESDSGLGPADVAYQVALPELDGRIEPIPIGGKEKRDDG 346 (1388)
T ss_pred hhhcCCCCcc-cch--hHHHHHcCCCEEEEEeccCccchHhhhhccCCChHHHHHhhccccccceeEEEEEeeeeccCCC
Confidence 9999988765 222 26999999999999988888999999999999999999999999999999999999986443
Q ss_pred ---CccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCC
Q 001237 467 ---GKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLP 543 (1117)
Q Consensus 467 ---~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~P 543 (1117)
..+.||||||+++|+|+.+|++||+|||+||||||||||||||++|||||+|||||+|+.+||++||++||+|+++|
T Consensus 347 ~~~~~~~pi~erie~la~r~~~w~~Lr~~pn~eKkVAii~ynyppgk~~iG~AsyLDvp~Sl~~iL~~L~~~GY~v~~iP 426 (1388)
T COG1429 347 TEVEAYVPIPERIEWLADRAIRWARLRRKPNAEKKVAIIYYNYPPGKDNIGTASYLDVPASLVNLLAALREEGYRVGNIP 426 (1388)
T ss_pred cceeEeeccHHHHHHHHHHHHHHHHHhcCCcccCeEEEEEccCCCCCCccccccccCCHHHHHHHHHHHHHCCCcCCCCC
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcc--ccccCCCCc------ccccccCHHHHhhhh-----HHHHHHHHHhCCCCCCCCCCCC---eEEE
Q 001237 544 ETSEALIEEIIHDK--EAQFSSPNL------NIAYKMGVREYQSLT-----PYATALEENWGKPPGNLNSDGE---NLLV 607 (1117)
Q Consensus 544 ~~~~~L~~~ll~~~--~~~~~~~~~------~~~~~~~~~~Y~~~~-----~~~~~i~~~WG~pPG~~~~~g~---~~~I 607 (1117)
.++++|++.+++.. ...|..... .....+++++|.+|+ +.++++++.||+|||++|+.++ +|+|
T Consensus 427 ~~~~el~~~l~~~~~n~~~~~~~~le~~~~~~~~~~vp~~~Y~eWf~~L~~~~~~~~~~~WG~~pG~~m~~~~~~k~~vI 506 (1388)
T COG1429 427 ANGDELIRELIRRGINVGAWAPGELEKLAENGVVDLVPLDEYLEWFSSLPEELRQRVVEEWGEPPGDIMVVEGEGKYFVI 506 (1388)
T ss_pred cchhHHHHHHHHHhhccccccccccchhccccceeeecHHHHHHHHHhCCHHHHHHHHHhhCCCCCCCceecCCccEEEE
Confidence 99999999988653 345554432 124589999999995 3789999999999999998665 8999
Q ss_pred eeeeeccEEEEeCCCCCCCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchh
Q 001237 608 YGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDS 687 (1117)
Q Consensus 608 ~G~~fGNVfIgvQP~RG~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~ 687 (1117)
||++||||||||||+|||.+||+.+|||+++||||||+|||+||+++|+|||||||||||||||||||++|||+.|||++
T Consensus 507 pg~~fGNV~v~pQP~RG~~~d~~~~YHs~~lPP~HqYlAfY~wL~~~f~ADAvVHvGtHGTlEWLPGK~vgLs~~d~P~i 586 (1388)
T COG1429 507 PGIRFGNVFVGPQPPRGWLGDESALYHSPDLPPTHQYLAFYYWLRRVFGADAVVHVGTHGTLEWLPGKEVGLSREDFPDI 586 (1388)
T ss_pred eeeeeccEEEEcCCCcccCCChhhhccCCCCCCchhHHHHHHHHHhhcCCCeEEEccCccCcccCCCccccCChhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCeeeEEecCCcchhhHHhhcccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHH
Q 001237 688 LIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK-DTGRGPQIVSSIISTAKQ 766 (1117)
Q Consensus 688 liGdlPniYpYivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~-~~~~~~~l~~~I~e~a~~ 766 (1117)
|||||||||||||||||||+||||||+|||||||||||++||||++|++|++||++|+++. |+.+++.+++.|++++++
T Consensus 587 llgdlP~iYpYiv~npgEg~~AKRR~~AviIdHLtPp~~~a~lYg~l~~L~~li~~Y~~~~~d~~~~~~l~~~I~~~~~~ 666 (1388)
T COG1429 587 LLGDLPNIYPYIVDNPGEGTQAKRRGYAVIIDHLTPPLVRAGLYGDLEELEELIEEYLQAEGDPSRREALREAILELVRE 666 (1388)
T ss_pred hhCCCCeEEEEecCCcchhHHhhhccCceecccCCCCccccccchhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999975 778899999999999999
Q ss_pred cCCcccCCCCcccccCChhHHhHHHHHHHHHHHHHHhccCCCCceecCCCCChHHHHHHHHHHHhcCCCcccccchhHHH
Q 001237 767 CNLDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSIL 846 (1117)
Q Consensus 767 ~~L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~i~~~~r~~~~~~sL~~~l 846 (1117)
+||+.|++... ..+.+.||.++++||+||||||+++||+||||||++|++|++++++.+|++ .+|.+++
T Consensus 667 ~~L~~dl~~~~---~~~~e~~d~~~~~lh~yL~el~~~~ip~GLHv~G~~p~~e~~~~~~~~i~r--------~~l~~~v 735 (1388)
T COG1429 667 LGLDEDLGEGI---SEKDEFFDELLEKLHDYLHELEEELIPYGLHVFGEPPSGEELVDTVAEIAR--------KSLLAMV 735 (1388)
T ss_pred cCchhhhcccc---cccchhHHHHHHHHHHHHHHHHhhhcCCceeeccCCCCcchhhhHHHHHHH--------HHHHHHH
Confidence 99999986111 112244899999999999999999999999999999999999999998887 5788999
Q ss_pred HHHhCCChhhhhcCCCC-CcccHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHhhhccCCCchhhhhhccccc
Q 001237 847 AETVGRDIEDIYRGSDK-GILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKF 925 (1117)
Q Consensus 847 a~~~g~d~~~l~~~~~~-~~~~~~~~l~~i~~~~~~~v~~~~~~~~~~~g~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 925 (1117)
+..+|.++++-...... ....... .......+.......+. .|...+..+.+.. + ...
T Consensus 736 ~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~q~~~~--~--~~~----------- 794 (1388)
T COG1429 736 AGMLGLDFDPDYAVLVSEVGATPLR-TLAEDTVALDLLTEVIL-----EGGLVEAAQLLLL--G--TSP----------- 794 (1388)
T ss_pred HHHcCcccccchhhhhhhccccccc-cccchhHHHhhhHHHHh-----cCccHHHHHHHhc--c--CCc-----------
Confidence 99999883321000000 0000000 00000001111111111 1111111111100 0 000
Q ss_pred ccccHHHHHHHHHHHHHHHH--hhcchhHHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHH
Q 001237 926 YRADRATLRTLFEFVGECLK--LVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSA 1003 (1117)
Q Consensus 926 ~~~~~~~l~~~~~~l~~~~~--~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G 1003 (1117)
. ...+...+....+... ..+++.||++||+||+|+||||||||||+|||||||||||||+|||++|||++||++|
T Consensus 795 -~--~~~~~~~~~~~~~~~~~l~~s~~~Ei~~lL~aL~G~yIppgp~GdP~r~pdvLPTGRNfy~~Dpr~iPT~aAw~~G 871 (1388)
T COG1429 795 -V--VATLPELLELAEEYAPLLLESADNEIENLLRALDGGYIPPGPGGDPVRNPDVLPTGRNFYALDPRLIPTEAAWELG 871 (1388)
T ss_pred -c--cchhhHHHHHHHHHHHhhhcccHHHHHHHHHHhcCCCCCCCCCCCcccCCCcCCCCCcccccCcccCCCHHHHHHH
Confidence 0 0011111111111111 2236899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEe
Q 001237 1004 KVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVN 1083 (1117)
Q Consensus 1004 ~~lAe~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~ 1083 (1117)
+++||++|++|+ ++||+|||+||++||||+||||+|++|||||||||||||||+.|||+|+|+||++||||||||||++
T Consensus 872 ~~lad~lL~~y~-~~~g~yPe~va~vlwg~~t~rt~G~~iaqiL~LlGV~Pvwd~~grV~gveviPl~eL~RPRIDV~v~ 950 (1388)
T COG1429 872 KELADLLLERYL-AEHGRYPEKVAVVLWGTETMRTGGEDIAQVLYLLGVRPVWDAGGRVTGVEVIPLEELGRPRIDVVVR 950 (1388)
T ss_pred HHHHHHHHHHHH-HHhCCCCceeEEEEEehhhhhcCChhHHHHHHHcCCeeeecCCCcccceEecCHHHcCCCceeEEEE
Confidence 999999999996 4568999999999999999999999999999999999999998999999999999999999999999
Q ss_pred cCchhhhhHHHHHHHH-------HhccCCCCCCcchhcccC
Q 001237 1084 CSGVFRDLFINQVLFT-------VAISCPTELPICTVCYLA 1117 (1117)
Q Consensus 1084 iSGiFRD~Fp~~i~Ll-------a~~~~~~~~~~~~~~~~~ 1117 (1117)
+||+|||+||++|+|| |+|+||.++|||||||++
T Consensus 951 ~SG~fRD~fp~~i~lld~Av~~va~ldE~~~~N~vrkh~~~ 991 (1388)
T COG1429 951 ISGLFRDAFPNQIELLDEAVRLAAALDEPPEMNYVRKHSLA 991 (1388)
T ss_pred eecccccccHHHHHHHHHHHHHHhhCCCCccccHHHHHHHH
Confidence 9999999999999986 899999999999999974
No 11
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=100.00 E-value=7.8e-36 Score=304.06 Aligned_cols=157 Identities=36% Similarity=0.569 Sum_probs=141.7
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhc-cCCccEEEEEehhhhcCChhhHHHHHHHhhcCCEEEEeccccHHHHHHHHHHH
Q 001237 77 VKIVYVVLEAQYQSALSAAVQALNQQ-VNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELALKIKAAV 155 (1117)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~adi~~~sllf~~~~~~~~~~~v 155 (1117)
|||||||+++||++++++|+++|+++ .|++++++|. ..+|.+|+++|++|++||++|||||+||||+|||++||.++|
T Consensus 1 ~r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~-~~el~~~~~~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L 79 (164)
T PF11965_consen 1 MRFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFA-AAELERDPEALEECEAAIARADIIFGSMLFIEDHVRPLLPAL 79 (164)
T ss_pred CEEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEe-HHHhhcChHHHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHH
Confidence 69999999999999999999999999 7766555554 445669999999999999999999999999999999999999
Q ss_pred HHhhcCcCEEEecCChHHHHHhhccCcccccccCCCCchHHHHHHhhh------cCCCcHHHHHHHHHhCCCeEEEcCCC
Q 001237 156 EKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKK------QGAGFADSMLKLVRTLPKVLKYLPSD 229 (1117)
Q Consensus 156 ~~~~~~~~~~~~~~s~~~~~~~tr~G~f~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~lpg~ 229 (1117)
+++|++||+++||+|+||||++||+|+|+|+ ++++.+++++|+.+ +++++.++||+++|++||+||||| +
T Consensus 80 ~~~r~~~~a~i~~~sapelm~lTrlG~f~m~---~~~~g~~~~lKkl~~~~~~~~~~~~~~~qm~llr~lpkiLkfIP-g 155 (164)
T PF11965_consen 80 EARRDHCPAMIIFESAPELMRLTRLGKFSMG---GEKSGPPALLKKLRGKLKKGRGEDAGAGQMKLLRRLPKILKFIP-G 155 (164)
T ss_pred HHHHccCCEEEEEcCHHHHHHHhcccceecC---CCCcchHHHHHHHHhhccCCCCCChHHhHHHHHHHhhHHhhhCC-c
Confidence 9999999999999999999999999999994 45555678888743 456889999999999999999999 6
Q ss_pred ChhhHHHHH
Q 001237 230 KAQDARLYI 238 (1117)
Q Consensus 230 ~~~d~~~~~ 238 (1117)
|+||+|+|+
T Consensus 156 kAqDlr~~~ 164 (164)
T PF11965_consen 156 KAQDLRAWF 164 (164)
T ss_pred hHHHHHhhC
Confidence 999999995
No 12
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=73.74 E-value=30 Score=41.79 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHc--CCcEEEEEcCCCCCc------hhhh---hhhccccCCCcceeEEEecccccccCCCCCCCchhHHH
Q 001237 338 HYVAVIMELEAR--GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIE 406 (1117)
Q Consensus 338 ~~dalI~aLE~~--Gl~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~ 406 (1117)
.+++++++++++ |+.|++|-+.|+..+ ..++ +++.. ......- ||+.|+-- + .+..+-..
T Consensus 115 Di~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~---~~~~~~~-VniiG~~~---~--~d~~el~~ 185 (427)
T PRK02842 115 DLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLAALVPFCPE---APADHPS-LVLVGSLA---D--VVEDQLTL 185 (427)
T ss_pred CHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHHHHhhhccc---ccCCCCc-EEEEEeCC---c--chHHHHHH
Confidence 578889999888 888888888887532 1111 22221 1111122 25556521 2 22345667
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcCCCC
Q 001237 407 ALRKLDVPYIVALPLVFQTTEEWLNSTLG 435 (1117)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s~~G 435 (1117)
+|+++++.+...+| ..+.+++..-..|
T Consensus 186 lL~~~Gi~v~~~lp--~~~~~d~~~~~~~ 212 (427)
T PRK02842 186 EFKKLGIGVVGFLP--ARRFTELPAIGPG 212 (427)
T ss_pred HHHHcCCeeEEEeC--CccHHHHhhcCcC
Confidence 99999999976665 3677888776554
No 13
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=69.20 E-value=47 Score=40.02 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHc-CCcEEEEEcCCCCC-c------hh---hhhhhccccCCCcceeEEEecccccccCCCC-CCCchhHH
Q 001237 338 HYVAVIMELEAR-GAKVIPIFAGGLDF-A------GP---VERFFVDPVMKKPMVNSAISLTGFALVGGPA-RQDHPRAI 405 (1117)
Q Consensus 338 ~~dalI~aLE~~-Gl~vipvf~~gl~~-~------~~---v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa-~~~~~~~~ 405 (1117)
.+++++++++++ |+.|+||-+.|+.. + .+ +-+.+..+...+ ...--||+.|+...-.+. ..|..+-.
T Consensus 107 Di~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~~~~~~~~~-~~~~~VNliG~~~~~~~~~~~d~~ei~ 185 (426)
T cd01972 107 DVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAFHGILRHLVPPQDPT-KQEDSVNIIGLWGGPERTEQEDVDEFK 185 (426)
T ss_pred CHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHHHHHHHHhcCCCCCC-CCCCCEEEEccCCCccccccccHHHHH
Confidence 478899988754 88999998888754 1 11 222333211011 112257776654321111 23556677
Q ss_pred HHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 406 EALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 406 ~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
.+|+++|+.|....+ ...+.++|++..
T Consensus 186 ~lL~~~Gi~v~~~~~-~~~~~~ei~~~~ 212 (426)
T cd01972 186 RLLNELGLRVNAIIA-GGCSVEELERAS 212 (426)
T ss_pred HHHHHcCCeEEEEeC-CCCCHHHHHhcc
Confidence 899999999987665 468999999764
No 14
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=66.14 E-value=51 Score=40.45 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=60.6
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc-CCcEEEEEcCCCCCc------h---hhhhhhccccCCCcceeEEEecccc
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-GAKVIPIFAGGLDFA------G---PVERFFVDPVMKKPMVNSAISLTGF 390 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~-Gl~vipvf~~gl~~~------~---~v~~~f~~~~~~~~~vDaiIn~tgF 390 (1117)
.|+|+.--..-+-| ..+++++++++++ |+.++||-+.|+... . .+-+.|...........--||+.|.
T Consensus 122 ~I~V~tTC~~~lIG--dDi~~v~~~~~~~~~~pvi~v~t~Gf~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~ 199 (475)
T PRK14478 122 AVFVYQTCVVALIG--DDIDAVCKRAAEKFGIPVIPVNSPGFVGNKNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGE 199 (475)
T ss_pred EEEEeCCChHHHhc--cCHHHHHHHHHHhhCCCEEEEECCCcccchhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeC
Confidence 45555443333333 3578899988854 999999988876532 1 1223333211111112234666542
Q ss_pred cccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001237 391 ALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1117)
Q Consensus 391 ~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1117)
.... .+..+-..+|+++++.|..-++ ...+.++++..
T Consensus 200 ~~~~----gd~~elk~lL~~~Gl~v~~~~~-~~~s~eei~~~ 236 (475)
T PRK14478 200 YNLA----GELWQVKPLLDRLGIRVVACIT-GDARYDDVASA 236 (475)
T ss_pred CCCC----CCHHHHHHHHHHcCCeEEEEcC-CCCCHHHHHhc
Confidence 2111 2445667899999999996554 45689999975
No 15
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=65.32 E-value=59 Score=39.26 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHc-CCcEEEEEcCCCCC-ch---------hhhhhhccccCCCcceeEEEecccccccCCCCCCCchhHHH
Q 001237 338 HYVAVIMELEAR-GAKVIPIFAGGLDF-AG---------PVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIE 406 (1117)
Q Consensus 338 ~~dalI~aLE~~-Gl~vipvf~~gl~~-~~---------~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~ 406 (1117)
.+++++++++++ |+.|+||-+.|... .. .+.+.+...........--||+.|.... ..|..+-..
T Consensus 117 Di~~v~~~~~~~~~~pvi~v~t~gf~g~s~~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~----~~d~~el~~ 192 (421)
T cd01976 117 DIEAVARKASKELGIPVVPVRCEGFRGVSQSLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNI----GGDAWASRI 192 (421)
T ss_pred CHHHHHHHHHHhhCCCEEEEeCCCccCCcccHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCC----CccHHHHHH
Confidence 577888888744 88999998888643 11 2333333211001111234665542211 134455678
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 407 ALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
+|++++++|..-++ ...+.++++..+
T Consensus 193 lL~~~Gi~v~~~~~-~~~t~eei~~~~ 218 (421)
T cd01976 193 LLEEMGLRVVAQWS-GDGTLNEMENAH 218 (421)
T ss_pred HHHHcCCeEEEEeC-CCCCHHHHHhcc
Confidence 99999999986664 567899999764
No 16
>PRK02929 L-arabinose isomerase; Provisional
Probab=62.07 E-value=68 Score=39.72 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHHcCCcEEEEEcCCC-CCchhhhhhhccccCCCcceeEEEec-ccccccCCCCCCCchhHHHHhhhCC
Q 001237 335 DDSHYVAVIMELEARGAKVIPIFAGGL-DFAGPVERFFVDPVMKKPMVNSAISL-TGFALVGGPARQDHPRAIEALRKLD 412 (1117)
Q Consensus 335 ~~~~~dalI~aLE~~Gl~vipvf~~gl-~~~~~v~~~f~~~~~~~~~vDaiIn~-tgF~L~ggpa~~~~~~~~~~L~~Ln 412 (1117)
-.++...+++.|.+.|-.++.|...++ +..+.+++++.. .+....+|.||-. .-|+ ++.-....++.++
T Consensus 27 ~~~~~~~i~~~l~~~~~~~~~vv~~~~v~~~~~i~~~~~~-~~~~~~~dgvi~~m~TFs--------~a~~~i~~~~~l~ 97 (499)
T PRK02929 27 VAEHAEEIVDGLNASGKLPVKIVLKPVLTTPDEITAVCRE-ANYDDNCAGVITWMHTFS--------PAKMWIRGLSALQ 97 (499)
T ss_pred HHHHHHHHHHHhcccCCCCeEEEEcCccCCHHHHHHHHHH-ccccCCCcEEEEccCCCc--------hHHHHHHHHHHcC
Confidence 345556788888887766666665443 444556666654 2334568888864 3443 2344567899999
Q ss_pred CcEEeEecCCCCCH--H----HHhcCCCCCChhhhhhheeccccCcce------eeEEEEeecCCCCccccchHHHHHHH
Q 001237 413 VPYIVALPLVFQTT--E----EWLNSTLGLHPIQVALQVALPELDGGL------EPIVFAGRDPRTGKAHALHKRVEQLC 480 (1117)
Q Consensus 413 VPvl~ai~l~~qt~--e----eW~~s~~GL~p~~~~~~ValPElDG~I------~piv~~~~~~~~~~~~pipeRi~~la 480 (1117)
+||+...+-....+ + +|.+.-+-. -..+|+-... ..++.|.-+. .-..++|...+
T Consensus 98 ~PvL~~~~Q~~~e~p~~~id~d~m~lnqs~--------~G~~e~~~il~R~gi~~~~v~G~~~d-----~~v~~~i~~w~ 164 (499)
T PRK02929 98 KPLLHLHTQFNAEIPWDTIDMDFMNLNQSA--------HGDREFGFIGARLRKQRKVVVGHWQD-----PEVQERIGAWM 164 (499)
T ss_pred CCEEEEecCCCccCCCCCCCcchhhhhhcc--------cChHHHHHHHHHcCCCeeEEEEeCCC-----HHHHHHHHHHH
Confidence 99998775221111 1 442221111 1333433322 2344432211 22568899999
Q ss_pred HHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q 001237 481 TRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEI 553 (1117)
Q Consensus 481 ~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~P~~~~~L~~~l 553 (1117)
+-+.-|-.||+ .||+.+=.|+ .||--+=-..+..-+.-|++|..++ ..+|++.+
T Consensus 165 raa~v~~~lr~-----~rig~~G~~m------------~~v~vtEgd~~~~~~~fG~~V~~~~--~~el~~~~ 218 (499)
T PRK02929 165 RVAAAWQESRH-----LKVARFGDNM------------RNVAVTEGDKVEAQIKFGWSVNTWG--VGDLVEVV 218 (499)
T ss_pred HHHHHHHHhcC-----CeEEEECCch------------hhcccCcchHHHHHHHhCcEEEEec--HHHHHHHH
Confidence 99999999997 5788876652 2222111245556678899996553 34565554
No 17
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=61.94 E-value=82 Score=38.03 Aligned_cols=107 Identities=15% Similarity=0.117 Sum_probs=62.0
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCc------hhhhh---hhccccCCCcceeEEEecccc-
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA------GPVER---FFVDPVMKKPMVNSAISLTGF- 390 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~------~~v~~---~f~~~~~~~~~vDaiIn~tgF- 390 (1117)
.|+|+.--..-+-| ..++++++++++.|..++||-+.|+... .+++. .|... ......--||..|.
T Consensus 89 ~I~V~ttC~~~~IG--dDi~~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~--~~~~~~~~VNiiG~~ 164 (427)
T cd01971 89 LFVVLTGCIAEIIG--DDVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVGQ--SEEKEPGLVNLWGPV 164 (427)
T ss_pred EEEEEcCCcHHHhh--cCHHHHHHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhccC--CCCCCCCeEEEEecc
Confidence 45555433322233 2478899998888999999988876532 12222 23221 10112234565543
Q ss_pred cccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001237 391 ALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1117)
Q Consensus 391 ~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1117)
+....-...|..+-.++|+++++.+...++ ...+.+++++.
T Consensus 165 ~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~-~~~~~~ei~~~ 205 (427)
T cd01971 165 PYQDPFWRGDLEEIKRVLEGIGLKVNILFG-PESNGEELRSI 205 (427)
T ss_pred CCccccccccHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHhc
Confidence 211110123556777899999999987775 35789999975
No 18
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=60.74 E-value=54 Score=40.44 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCC-CCCchhhhhhhccccCCCcceeEEEec-ccccccCCCCCCCchhHHHHhhhCCCc
Q 001237 337 SHYVAVIMELEARGAKVIPIFAGG-LDFAGPVERFFVDPVMKKPMVNSAISL-TGFALVGGPARQDHPRAIEALRKLDVP 414 (1117)
Q Consensus 337 ~~~dalI~aLE~~Gl~vipvf~~g-l~~~~~v~~~f~~~~~~~~~vDaiIn~-tgF~L~ggpa~~~~~~~~~~L~~LnVP 414 (1117)
++...+++.|.+.|-.++.|...+ ++..+.+.+.|.. .+....+|.||-. .-|+ ++.-....++.+++|
T Consensus 23 ~~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~-~~~~~~~dgvi~~m~TFs--------~a~~~i~~~~~l~~P 93 (484)
T cd03557 23 AHSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCRE-ANADDNCAGVITWMHTFS--------PAKMWIAGLTALQKP 93 (484)
T ss_pred HHHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHH-ccccCCccEEEEccCCCc--------hHHHHHHHHHHcCCC
Confidence 455678888888886656665544 4555567777754 2223568888764 3443 234456789999999
Q ss_pred EEeEecCCCCCHHHHhcCCCCCChhhhhhhe-eccccCcce------eeEEEEeecCCCCccccchHHHHHHHHHHHHHH
Q 001237 415 YIVALPLVFQTTEEWLNSTLGLHPIQVALQV-ALPELDGGL------EPIVFAGRDPRTGKAHALHKRVEQLCTRAIRWG 487 (1117)
Q Consensus 415 vl~ai~l~~qt~eeW~~s~~GL~p~~~~~~V-alPElDG~I------~piv~~~~~~~~~~~~pipeRi~~la~ra~~W~ 487 (1117)
|+...+- +...=.|..-+.+. +..-..- ..||+-... ..++.|..+ -.-..++|+..++-+.-|-
T Consensus 94 vL~~~~q-~~~~l~~~sidmd~--m~l~qaahG~~e~~~il~R~gi~~~~v~G~~~-----d~~~~~~i~~w~raa~v~~ 165 (484)
T cd03557 94 LLHLHTQ-FNREIPWDTIDMDF--MNLNQSAHGDREFGFIGSRMRIPRKVVVGHWQ-----DPEVHEKIGDWMRAAAGWA 165 (484)
T ss_pred EEEEccC-CCccCCCCCccchH--HhhhhhcCCcHHHHHHHHHcCCCeeEEEEeCC-----CHHHHHHHHHHHHHHHHHH
Confidence 9987653 22122233211111 0111111 334443322 234443221 1125688999999999999
Q ss_pred HcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q 001237 488 ELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEI 553 (1117)
Q Consensus 488 ~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~P~~~~~L~~~l 553 (1117)
.||+ -|||.+=+| ..||--|=-..+..-+.-|+.|..++ ..+|.+.+
T Consensus 166 ~lr~-----~rI~~~G~~------------m~~v~vtEgd~~~~~~~fG~~V~~~~--l~el~~~~ 212 (484)
T cd03557 166 DSRH-----LKVARFGDN------------MRNVAVTEGDKVEAQIQFGWSVNGYG--VGDLVARV 212 (484)
T ss_pred Hhhc-----CeeEEEcCc------------cceeccCcchHHHHHHHhCeEEEEEc--HHHHHHHH
Confidence 9997 478876552 34443222245555677799886543 34555544
No 19
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=60.44 E-value=77 Score=38.53 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHc-CCcEEEEEcCCCCC-c------hhhh---hhhccccCCCcceeEEEeccc-ccccCCCCCCCchhH
Q 001237 337 SHYVAVIMELEAR-GAKVIPIFAGGLDF-A------GPVE---RFFVDPVMKKPMVNSAISLTG-FALVGGPARQDHPRA 404 (1117)
Q Consensus 337 ~~~dalI~aLE~~-Gl~vipvf~~gl~~-~------~~v~---~~f~~~~~~~~~vDaiIn~tg-F~L~ggpa~~~~~~~ 404 (1117)
..+++++++++++ |+.|+||-+.|+.. . .+++ +.|...........--||+.| |.+ ..+..+-
T Consensus 135 dDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~-----~~d~~el 209 (443)
T TIGR01862 135 DDIEAVAKEVSKEIGKDVVAVNCPGFAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNI-----GGDAWVM 209 (443)
T ss_pred cCHHHHHHHHHHhcCCCEEEEecCCccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcC-----cccHHHH
Confidence 3578888888754 78888887776643 1 1111 223211111111123456544 322 1355667
Q ss_pred HHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 405 IEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 405 ~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
.++|+++++.+...++ ...+.+++++.+
T Consensus 210 ~~lL~~~Gl~v~~~~~-~~~t~eei~~~~ 237 (443)
T TIGR01862 210 RIYLEEMGIQVVATFT-GDGTYDEIRLMH 237 (443)
T ss_pred HHHHHHcCCeEEEEEC-CCCCHHHHHhcc
Confidence 7899999999987664 467899999764
No 20
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=59.66 E-value=31 Score=39.27 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=53.4
Q ss_pred eEEEEeeccccccC-CChHHHHHHHHHHHcCCcEEEEEcCCCCCc---hhhhhhhccccCCCcceeEEEecccccccCCC
Q 001237 321 VIGLILQRSHIVTG-DDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g-~~~~~dalI~aLE~~Gl~vipvf~~gl~~~---~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggp 396 (1117)
+|||||-...---. .......++++|+++|..|+++........ +..+..... ......+|+|++.. .|.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~v~~~~-----~g~ 74 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILEL-GALLEGIDVVFPVL-----HGR 74 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhc-cccCCCCCEEEEec-----CCC
Confidence 37888876443221 234567799999999999999987542110 111111100 01224589999954 121
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001237 397 ARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1117)
.+.+. ....+|+.+|+||+..
T Consensus 75 ~~~~~-~~~~~le~~gip~~g~ 95 (315)
T TIGR01205 75 YGEDG-TIQGLLELMGIPYTGS 95 (315)
T ss_pred CCCCc-HHHHHHHHcCCCccCC
Confidence 12222 3456899999999864
No 21
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=58.81 E-value=94 Score=36.98 Aligned_cols=91 Identities=16% Similarity=0.080 Sum_probs=56.3
Q ss_pred HHHHHHHHHHH-cCCcEEEEEcCCCCC-c---------hhhhhhhccccCCCcceeEEEecccccccCCCCCCCchhHHH
Q 001237 338 HYVAVIMELEA-RGAKVIPIFAGGLDF-A---------GPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIE 406 (1117)
Q Consensus 338 ~~dalI~aLE~-~Gl~vipvf~~gl~~-~---------~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~ 406 (1117)
.++++++++++ .|+.++||-+.|+.. + .++-+++...........--||+.|+.. .+ .|..+-.+
T Consensus 105 Di~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~--~~--~d~~el~~ 180 (406)
T cd01967 105 DIEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYN--IG--GDAWVIKP 180 (406)
T ss_pred CHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccc--cc--hhHHHHHH
Confidence 47788888875 488899998887654 1 1222333321100111233466655421 11 25566778
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 407 ALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
+|+++++.+...++ ...+.+++++.+
T Consensus 181 lL~~~Gi~~~~~~~-~~~~~~~i~~~~ 206 (406)
T cd01967 181 LLEELGIRVNATFT-GDGTVDELRRAH 206 (406)
T ss_pred HHHHcCCEEEEEeC-CCCCHHHHhhCc
Confidence 99999999997775 478999999764
No 22
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=56.83 E-value=58 Score=39.34 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=60.8
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc----CCcEEEEEcCCCCCch------hhhh---hhccccCCCcceeEEEec
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR----GAKVIPIFAGGLDFAG------PVER---FFVDPVMKKPMVNSAISL 387 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~----Gl~vipvf~~gl~~~~------~v~~---~f~~~~~~~~~vDaiIn~ 387 (1117)
.|+|+.--..-+-|| .+++++++++++ +..++||-+.|+..+. +++. .|..+ ...+--||+
T Consensus 87 ~I~V~ttc~~~iiGd--Di~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~a~~al~~~~~~~----~~~~~~VNl 160 (429)
T cd03466 87 VIGIATTCLSETIGE--DVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSIVKNIAVD----PDKIEKINV 160 (429)
T ss_pred EEEEeCCchHHHhhc--CHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHHHHHHHHHHhccC----CCCCCcEEE
Confidence 455554433333332 478999999985 7889999888775321 1222 22221 112334676
Q ss_pred ccccccCCCCCCCchhHHHHhhhCCCcEEe-----------------EecCCCCCHHHHhcCC
Q 001237 388 TGFALVGGPARQDHPRAIEALRKLDVPYIV-----------------ALPLVFQTTEEWLNST 433 (1117)
Q Consensus 388 tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~-----------------ai~l~~qt~eeW~~s~ 433 (1117)
.|..+. ..|..+-.++|+++++.++. +++....+.++|++.+
T Consensus 161 ig~~~~----~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 219 (429)
T cd03466 161 IAGMMS----PADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMG 219 (429)
T ss_pred ECCCCC----hhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHHHhhc
Confidence 543222 23556677899999999842 2333456889999764
No 23
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=56.74 E-value=25 Score=35.55 Aligned_cols=60 Identities=18% Similarity=0.099 Sum_probs=31.2
Q ss_pred EEEEEEEcccc---hhHHHHHHHHHHHhccCCccEEEEEehhhhc-------------CChhhHHHHHHHhhcCCEEEE
Q 001237 77 VKIVYVVLEAQ---YQSALSAAVQALNQQVNYASYEVVGYLVEEL-------------RDVDTYKTFCKDLENANIFIG 139 (1117)
Q Consensus 77 ~~~v~v~~~~~---~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~adi~~~ 139 (1117)
|||++|...+. ....+.+++...-++. + .++..+...+. ..++.++++.+.+.+||.+|.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~-g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~ 76 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA-G--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIF 76 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT-T--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc-C--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEE
Confidence 78999988774 3444444444333332 3 44433333332 123456666777777775544
No 24
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=55.20 E-value=1.3e+02 Score=36.16 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=61.2
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHH-----cCCcEEEEEcCCCCCc------hhhh---hhhccccCCCcceeEEEe
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEA-----RGAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAIS 386 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~-----~Gl~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~vDaiIn 386 (1117)
.|+|+.-=..-+-|+ .++++++++++ .|..++++-+.|...+ .+++ +.|..+. .+ ...--||
T Consensus 84 ~I~v~~tC~~~liGd--Di~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~-~~-~~~~~VN 159 (428)
T cd01965 84 VIGVLTTCLTETIGD--DVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPS-EV-KKNGKVN 159 (428)
T ss_pred EEEEECCcchhhcCC--CHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhccc-CC-CCCCeEE
Confidence 455554443333333 47889999987 5899999877776532 1122 2233211 00 1122344
Q ss_pred cc-cccccCCCCCCCchhHHHHhhhCCCcEEeEecC-----------------CCCCHHHHhcCC
Q 001237 387 LT-GFALVGGPARQDHPRAIEALRKLDVPYIVALPL-----------------VFQTTEEWLNST 433 (1117)
Q Consensus 387 ~t-gF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l-----------------~~qt~eeW~~s~ 433 (1117)
+. +|.+..+ |..+-.++|+++|+.+....+. ...+.+++++.+
T Consensus 160 lig~~~~~~~----d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~ 220 (428)
T cd01965 160 LLPGFPLTPG----DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAG 220 (428)
T ss_pred EECCCCCCcc----CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhc
Confidence 43 4443221 4566778999999999976653 346788888753
No 25
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=53.88 E-value=1.2e+02 Score=36.49 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHc-CCcEEEEEcCCCCCc------hh---hhhhhccccCCCcceeEEEeccc-ccccCCCCCCCchhHHH
Q 001237 338 HYVAVIMELEAR-GAKVIPIFAGGLDFA------GP---VERFFVDPVMKKPMVNSAISLTG-FALVGGPARQDHPRAIE 406 (1117)
Q Consensus 338 ~~dalI~aLE~~-Gl~vipvf~~gl~~~------~~---v~~~f~~~~~~~~~vDaiIn~tg-F~L~ggpa~~~~~~~~~ 406 (1117)
.+++++++++++ |..++++.+.|+..+ .+ +-+.+...........--||..| |.+ ..+..+-.+
T Consensus 104 Di~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~-----~~d~~el~~ 178 (410)
T cd01968 104 DIDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNV-----AGELWGVKP 178 (410)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC-----cccHHHHHH
Confidence 577888888754 888999988886432 12 22233321111110123356544 332 124456778
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcC
Q 001237 407 ALRKLDVPYIVALPLVFQTTEEWLNS 432 (1117)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1117)
+|+++|+.|...++ ...|.+++++.
T Consensus 179 lL~~~Gl~v~~~~~-~~~s~eei~~~ 203 (410)
T cd01968 179 LLEKLGIRVLASIT-GDSRVDEIRRA 203 (410)
T ss_pred HHHHcCCeEEEEeC-CCCCHHHHHhh
Confidence 99999999987665 45799999975
No 26
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=52.89 E-value=1.2e+02 Score=37.31 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHc-CCcEEEEEcCCCCC-c---------hhhhhhhccccCCC--cceeEEEeccc-ccccCCCCCCCchh
Q 001237 338 HYVAVIMELEAR-GAKVIPIFAGGLDF-A---------GPVERFFVDPVMKK--PMVNSAISLTG-FALVGGPARQDHPR 403 (1117)
Q Consensus 338 ~~dalI~aLE~~-Gl~vipvf~~gl~~-~---------~~v~~~f~~~~~~~--~~vDaiIn~tg-F~L~ggpa~~~~~~ 403 (1117)
.+++++++++++ |+.|+||-+.|+.. + .++-+++......+ ....--||+.| |.+ .+|..+
T Consensus 150 Di~av~~~~~~~~~~pVi~v~t~gf~G~s~~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~-----~gd~~e 224 (466)
T TIGR01282 150 DIEAVAKKASKELGKPVVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNI-----GGDAWE 224 (466)
T ss_pred CHHHHHHHHhhhcCCcEEEEeCCCcCCchhhHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCC-----cccHHH
Confidence 578889888754 89999998888753 1 12334444311100 01123456544 322 134455
Q ss_pred HHHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 404 AIEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 404 ~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
-..+|+++++.|..-++ ...+.++++..+
T Consensus 225 ik~lL~~~Gi~v~~~~s-g~~t~~~i~~~~ 253 (466)
T TIGR01282 225 SRILLEEIGLRVVAQWS-GDGTLNEMENAP 253 (466)
T ss_pred HHHHHHHcCCeEEEEEC-CCCCHHHHHhcc
Confidence 66899999999985554 457899999764
No 27
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=52.27 E-value=1.2e+02 Score=36.95 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHc-----CCcEEEEEcCCCCCc---------hhhhhhhccccCCCcceeEEEeccc-ccccCCCCCCCch
Q 001237 338 HYVAVIMELEAR-----GAKVIPIFAGGLDFA---------GPVERFFVDPVMKKPMVNSAISLTG-FALVGGPARQDHP 402 (1117)
Q Consensus 338 ~~dalI~aLE~~-----Gl~vipvf~~gl~~~---------~~v~~~f~~~~~~~~~vDaiIn~tg-F~L~ggpa~~~~~ 402 (1117)
.+++++++++++ |+.++||-+.|.... .++-+.|..+........--||+.+ +.+. .+|..
T Consensus 109 Di~~v~~~~~~e~p~~~~~pvi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~----~~d~~ 184 (432)
T TIGR01285 109 DIARVVRQFREKHPQHKGTAVVTVNTPDFKGSLEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLT----PGDIE 184 (432)
T ss_pred CHHHHHHHHHhhcccccCCeEEEecCCCcCCchHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCC----ccCHH
Confidence 578899998874 889999888776532 1222334331111111123466643 3222 13556
Q ss_pred hHHHHhhhCCCcEE
Q 001237 403 RAIEALRKLDVPYI 416 (1117)
Q Consensus 403 ~~~~~L~~LnVPvl 416 (1117)
+-.++|+++++.++
T Consensus 185 elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 185 ELRRMVEAFGLKPI 198 (432)
T ss_pred HHHHHHHHcCCceE
Confidence 67789999999985
No 28
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=50.22 E-value=63 Score=38.87 Aligned_cols=152 Identities=20% Similarity=0.299 Sum_probs=87.5
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccc----cc
Q 001237 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGF----AL 392 (1117)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF----~L 392 (1117)
.++|.||+-.+... +..++++.+.||++|+.|+..-+.|.. -.++|++-.+ | .+|+|+.+|-= -|
T Consensus 183 ~~kp~I~iTmfGvT-----Tp~V~~~~~~Le~~G~Ev~VFHAtG~G-G~aME~Li~~---G--~~~~VlDlTttEl~d~l 251 (403)
T PF06792_consen 183 EDKPLIGITMFGVT-----TPCVDAIRERLEEEGYEVLVFHATGTG-GRAMERLIRE---G--QFDGVLDLTTTELADEL 251 (403)
T ss_pred CCCcEEEEECCCCc-----HHHHHHHHHHHHhcCCeEEEEcCCCCc-hHHHHHHHHc---C--CcEEEEECcHHHHHHHH
Confidence 56899999988533 578899999999999999955556653 3567776643 2 48999987632 13
Q ss_pred cCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccc-cCcceeeEEEEeecCCCCcccc
Q 001237 393 VGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPE-LDGGLEPIVFAGRDPRTGKAHA 471 (1117)
Q Consensus 393 ~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPE-lDG~I~piv~~~~~~~~~~~~p 471 (1117)
.||-.... +.--+.-.+.+||++...-.. +. -.+.|.+ .+|| +.|+-- --.++....++.
T Consensus 252 ~GGv~sag-p~Rl~AA~~~GIP~Vvs~Gal--Dm-------VnFg~~~-----tvPe~~~~R~~----~~HNp~vTlmRt 312 (403)
T PF06792_consen 252 FGGVLSAG-PDRLEAAARAGIPQVVSPGAL--DM-------VNFGPPD-----TVPEKFKGRKL----YEHNPQVTLMRT 312 (403)
T ss_pred hCCCCCCC-chHHHHHHHcCCCEEEecCcc--ce-------eccCCcc-----cCCHhhcCCcc----eecCCceeEeeC
Confidence 45422111 112234457899988654211 11 0111211 1343 444320 000111113455
Q ss_pred chHHHHHHHHHHHHHHHcccCCCCCceEEEEe
Q 001237 472 LHKRVEQLCTRAIRWGELKRKTKAEKKLAITV 503 (1117)
Q Consensus 472 ipeRi~~la~ra~~W~~LR~kpnaeKKVAIil 503 (1117)
-+|....+++.+..-++- +.-.|+|++
T Consensus 313 t~eE~~~~g~~ia~kLn~-----~~gpv~v~l 339 (403)
T PF06792_consen 313 TPEENRQLGEFIAEKLNR-----AKGPVRVLL 339 (403)
T ss_pred CHHHHHHHHHHHHHHHhc-----CCCCEEEEE
Confidence 678787777777664443 566688888
No 29
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=48.04 E-value=5.8 Score=35.43 Aligned_cols=35 Identities=34% Similarity=0.481 Sum_probs=29.6
Q ss_pred ecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCC
Q 001237 504 FSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYN 538 (1117)
Q Consensus 504 ~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~ 538 (1117)
+.|||--..|+-+.++.++.|+...|++|.+.||=
T Consensus 22 ~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I 56 (65)
T PF01726_consen 22 NGYPPTVREIAEALGLKSTSTVQRHLKALERKGYI 56 (65)
T ss_dssp HSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCc
Confidence 47899988999999999999999999999999994
No 30
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.72 E-value=1.4e+02 Score=36.04 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHc-----CCcEEEEEcCCCCCc------hh---hhhhhccccCCCcceeEEEecc-cccccCCCCCCCch
Q 001237 338 HYVAVIMELEAR-----GAKVIPIFAGGLDFA------GP---VERFFVDPVMKKPMVNSAISLT-GFALVGGPARQDHP 402 (1117)
Q Consensus 338 ~~dalI~aLE~~-----Gl~vipvf~~gl~~~------~~---v~~~f~~~~~~~~~vDaiIn~t-gF~L~ggpa~~~~~ 402 (1117)
.+++++++++++ |..+++|-+.|.... .+ +-+.|..+...+....--||+. ++.+. ..|-.
T Consensus 99 Di~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~----~~D~~ 174 (417)
T cd01966 99 DIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLT----PGDVE 174 (417)
T ss_pred CHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCC----HHHHH
Confidence 478899999888 888888877776421 12 2233333211001122345654 33221 12455
Q ss_pred hHHHHhhhCCCcEEe
Q 001237 403 RAIEALRKLDVPYIV 417 (1117)
Q Consensus 403 ~~~~~L~~LnVPvl~ 417 (1117)
+-.++|+++++-+..
T Consensus 175 eik~lL~~~Gl~v~~ 189 (417)
T cd01966 175 ELKDIIEAFGLEPII 189 (417)
T ss_pred HHHHHHHHcCCceEE
Confidence 667899999999853
No 31
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=43.05 E-value=1.6e+02 Score=36.07 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=48.7
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc-----CCcEEEEEcCCCCCc------hh---hhhhhccccCCCcceeEEEe
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GP---VERFFVDPVMKKPMVNSAIS 386 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~-----Gl~vipvf~~gl~~~------~~---v~~~f~~~~~~~~~vDaiIn 386 (1117)
.|+|+.--..-+-|| .+++++++++++ |..|++|-+.|.... .+ +-+.|..+........--||
T Consensus 95 ~I~V~ttC~~eiIGD--Di~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VN 172 (455)
T PRK14476 95 IIGLCTTGLTETRGD--DVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAIVEALVPPASSTGRRPRQVN 172 (455)
T ss_pred EEEEeCcchHhhhhc--cHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEE
Confidence 566654432222232 478899999887 788898877776421 12 22233321000111222355
Q ss_pred cc-cccccCCCCCCCchhHHHHhhhCCCcEE
Q 001237 387 LT-GFALVGGPARQDHPRAIEALRKLDVPYI 416 (1117)
Q Consensus 387 ~t-gF~L~ggpa~~~~~~~~~~L~~LnVPvl 416 (1117)
+. ++.+. ..|..+-.++|+.+|+-++
T Consensus 173 iIgg~~~~----~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 173 VLPGSHLT----PGDIEELREIIEAFGLEPI 199 (455)
T ss_pred EECCCCCC----cccHHHHHHHHHHcCCceE
Confidence 54 22221 2355667789999999985
No 32
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=41.17 E-value=2.6e+02 Score=34.33 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHc--CCcEEEEEcCCCCC-ch------hhhhhh---ccccCCCcceeEEEecccccccCCCCCCCchhH
Q 001237 337 SHYVAVIMELEAR--GAKVIPIFAGGLDF-AG------PVERFF---VDPVMKKPMVNSAISLTGFALVGGPARQDHPRA 404 (1117)
Q Consensus 337 ~~~dalI~aLE~~--Gl~vipvf~~gl~~-~~------~v~~~f---~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~ 404 (1117)
..+++++++++++ |+.|+||-+.|+.. .. +.+.++ ...........--||+.|-... ..+..+-
T Consensus 144 DDi~~v~~~~~~~~~~~~vi~v~tpgf~g~s~~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~----~gd~~el 219 (461)
T TIGR01860 144 DDIKAVAKKVQKELPDVDIFTVECPGFAGVSQSKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNI----QGDTQVL 219 (461)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCcCCcccchHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCC----cccHHHH
Confidence 3578889988876 67889888877653 11 122221 1111111112233565441111 1244566
Q ss_pred HHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001237 405 IEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1117)
Q Consensus 405 ~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1117)
.++|+++|+.+...++ ...+.++++..
T Consensus 220 ~~lL~~~Gi~v~~~~~-g~~t~~ei~~~ 246 (461)
T TIGR01860 220 QKYWDKMGIQVIAHFT-GNGTYDDLRCM 246 (461)
T ss_pred HHHHHHcCCcEEEEeC-CCCCHHHHHhc
Confidence 7899999999987664 46788999875
No 33
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=40.64 E-value=1.7e+02 Score=39.08 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=53.9
Q ss_pred HHHHHHHHHHH-cCCcEEEEEcCCCCCc------hh---hhhhhccccCCCcceeEEEeccc-ccccCCCCCCCchhHHH
Q 001237 338 HYVAVIMELEA-RGAKVIPIFAGGLDFA------GP---VERFFVDPVMKKPMVNSAISLTG-FALVGGPARQDHPRAIE 406 (1117)
Q Consensus 338 ~~dalI~aLE~-~Gl~vipvf~~gl~~~------~~---v~~~f~~~~~~~~~vDaiIn~tg-F~L~ggpa~~~~~~~~~ 406 (1117)
.++++|+++++ .|+.|+||-+.|+..+ .+ +-+.|..........+--||+.| |.+ .++..+-..
T Consensus 130 Di~~v~~~~~~~~~~pvi~v~tpGF~gs~~~G~~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~-----~gd~~elk~ 204 (917)
T PRK14477 130 DVEAVCKAAAEKVGIPVIPVNTPGFIGDKNIGNRLAGEALLKHVIGTAEPEVTTPYDINLIGEYNI-----AGDLWGMLP 204 (917)
T ss_pred CHHHHHHHHHHhhCCcEEEEECCCccCchhhHHHHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCC-----cchHHHHHH
Confidence 57889998875 4899999988876432 12 22233211010111123356543 332 123445667
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 407 ALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
+|+++++.|+..++ ...+.++++...
T Consensus 205 lL~~~Gi~v~~~~~-g~~t~eei~~~~ 230 (917)
T PRK14477 205 LFDRLGIRVLSCIS-GDAKFEELRYAH 230 (917)
T ss_pred HHHHcCCeEEEEcC-CCCCHHHHHhcc
Confidence 99999999876664 456899999763
No 34
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=40.60 E-value=2.4e+02 Score=34.43 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=54.2
Q ss_pred HHHHHHHHHHH-cCCcEEEEEcCCCCCch------h---hhhhhccccCCC----cceeEEEeccc-ccccCCCCCCCch
Q 001237 338 HYVAVIMELEA-RGAKVIPIFAGGLDFAG------P---VERFFVDPVMKK----PMVNSAISLTG-FALVGGPARQDHP 402 (1117)
Q Consensus 338 ~~dalI~aLE~-~Gl~vipvf~~gl~~~~------~---v~~~f~~~~~~~----~~vDaiIn~tg-F~L~ggpa~~~~~ 402 (1117)
.++++++++++ .|+.|+||-+.|+.... + +-+++....... ....--||+.| |.. ..+..
T Consensus 139 Di~~v~~e~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~-----~~d~~ 213 (456)
T TIGR01283 139 DLEAVCKAAAEKTGIPVIPVDSEGFYGSKNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNV-----AGEFW 213 (456)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCccchhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCC-----cccHH
Confidence 57789988875 58999999888864321 1 222333210000 01123466554 322 12444
Q ss_pred hHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001237 403 RAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1117)
Q Consensus 403 ~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1117)
+-.++|+++|+.|...++ ...+.++++..
T Consensus 214 el~~lL~~~Gl~v~~~~~-~~~s~eei~~~ 242 (456)
T TIGR01283 214 HVKPLLEKLGIRVLATIT-GDSRYAEVQTA 242 (456)
T ss_pred HHHHHHHHcCCeEEEEeC-CCCcHHHHHhc
Confidence 667899999999998775 45689999865
No 35
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.69 E-value=2.6e+02 Score=33.96 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=47.9
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc-----CCcEEEEEcCCCCCc------hh---hhhhhccccCCCcceeEEEe
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GP---VERFFVDPVMKKPMVNSAIS 386 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~-----Gl~vipvf~~gl~~~------~~---v~~~f~~~~~~~~~vDaiIn 386 (1117)
.|+|+.--.--+-| ..+++++++++++ |..|++|-+.|...+ .+ +-+.+......... .--||
T Consensus 88 ~I~v~ttC~~~iiG--dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~-~~~VN 164 (435)
T cd01974 88 MIAVSTTCMAEVIG--DDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGILTHLTEGSGGAGK-NGKLN 164 (435)
T ss_pred EEEEeCCchHhhhh--ccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHHHHHHhcccCCCCC-CCeEE
Confidence 45555444333333 3578889988877 688888877665422 11 22223221111011 12355
Q ss_pred ccc-ccccCCCCCCCchhHHHHhhhCCCcEEe
Q 001237 387 LTG-FALVGGPARQDHPRAIEALRKLDVPYIV 417 (1117)
Q Consensus 387 ~tg-F~L~ggpa~~~~~~~~~~L~~LnVPvl~ 417 (1117)
+.+ |. .+. .+..+-.++|+++++.+..
T Consensus 165 li~~~~---~~~-d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 165 IIPGFD---TYA-GNMREIKRLLELMGVDYTI 192 (435)
T ss_pred EECCCC---CCc-chHHHHHHHHHHcCCCEEE
Confidence 443 32 121 1356677899999999963
No 36
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=36.58 E-value=1.5e+02 Score=28.95 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=35.3
Q ss_pred HHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEe
Q 001237 345 ELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVAL 419 (1117)
Q Consensus 345 aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai 419 (1117)
.|++.|+.+.+|.......++.+.+.+.+ +..||.|||+.. ....-+...+...-...--+.|||++..+
T Consensus 37 ~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~----~g~idlVIn~~~-~~~~~~~~~dg~~iRR~A~~~~Ip~~T~~ 106 (112)
T cd00532 37 VLADAGIPVRAVSKRHEDGEPTVDAAIAE----KGKFDVVINLRD-PRRDRCTDEDGTALLRLARLYKIPVTTPN 106 (112)
T ss_pred HHHHcCCceEEEEecCCCCCcHHHHHHhC----CCCEEEEEEcCC-CCcccccCCChHHHHHHHHHcCCCEEECH
Confidence 35567777776654322122334444432 035999999863 11101122222233333446699999654
No 37
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=35.79 E-value=4.1e+02 Score=33.24 Aligned_cols=92 Identities=9% Similarity=0.087 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHc--CCcEEEEEcCCCCC------c-hhhhhhh---ccccCCCcceeEEEecccccccCCCCCCCchhH
Q 001237 337 SHYVAVIMELEAR--GAKVIPIFAGGLDF------A-GPVERFF---VDPVMKKPMVNSAISLTGFALVGGPARQDHPRA 404 (1117)
Q Consensus 337 ~~~dalI~aLE~~--Gl~vipvf~~gl~~------~-~~v~~~f---~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~ 404 (1117)
+.+++++++.+++ |..||||-+.|+.. . .+++.++ ...........--||+.|=... ..|...-
T Consensus 145 DDi~av~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~----~gD~~ei 220 (513)
T TIGR01861 145 DDIAAIAKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNI----QGDQEVM 220 (513)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCC----ccCHHHH
Confidence 3678888888765 78899887766532 1 1233332 2110000111234665432111 2355566
Q ss_pred HHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 405 IEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 405 ~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
..+|+++++.|+...+ -..+.++++...
T Consensus 221 k~lLe~~Gl~v~~~~~-gg~t~~ei~~~~ 248 (513)
T TIGR01861 221 VDYFQRMGIQVLSTFT-GNGSYDDLRGMH 248 (513)
T ss_pred HHHHHHCCCeEEEEeC-CCCCHHHHHhhc
Confidence 7899999999997664 467889998653
No 38
>PRK02399 hypothetical protein; Provisional
Probab=35.71 E-value=87 Score=37.69 Aligned_cols=91 Identities=27% Similarity=0.388 Sum_probs=58.1
Q ss_pred CCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccc----c
Q 001237 316 GPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGF----A 391 (1117)
Q Consensus 316 ~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF----~ 391 (1117)
..+||.||+-.+... +..++++.+.||++|+.|+..-+.|... .++|++-.. -.+|+|+.+|-= -
T Consensus 183 ~~~kp~Ig~TmfGvT-----tp~v~~~~~~Le~~GyEvlVFHATG~GG-raME~Li~~-----G~~~gVlDlTttEv~d~ 251 (406)
T PRK02399 183 SDDKPLIGLTMFGVT-----TPCVQAAREELEARGYEVLVFHATGTGG-RAMEKLIDS-----GLIAGVLDLTTTEVCDE 251 (406)
T ss_pred CCCCceEEEecCCCc-----HHHHHHHHHHHHhCCCeEEEEcCCCCch-HHHHHHHHc-----CCceEEEEcchHHHHHH
Confidence 356899999987533 4788999999999999999544555533 467776543 248999887631 1
Q ss_pred ccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001237 392 LVGGPARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 392 L~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
|.||-.....+ --+.-.+.+||.+..
T Consensus 252 l~GGv~sagp~-Rl~Aa~~~gIP~Vvs 277 (406)
T PRK02399 252 LFGGVLAAGPD-RLEAAARTGIPQVVS 277 (406)
T ss_pred HhCcCccCCcc-HHHHHHHcCCCEEec
Confidence 34542211111 123345778998844
No 39
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.62 E-value=1.3e+02 Score=31.65 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=40.2
Q ss_pred EEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHh--hcCCEEEEeccc
Q 001237 78 KIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDL--ENANIFIGSLIF 143 (1117)
Q Consensus 78 ~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~adi~~~sllf 143 (1117)
++.++ ..-...+.++.+.|++.+|++. +.++...-. +++..+++.++| +++||++..|=.
T Consensus 50 ~ifll---G~~~~~~~~~~~~l~~~yP~l~--ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 50 RIFLL---GGSEEVLEKAAANLRRRYPGLR--IVGYHHGYF-DEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred eEEEE---eCCHHHHHHHHHHHHHHCCCeE--EEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 45555 3446777889999999999754 444333322 455566666655 588999998765
No 40
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=34.62 E-value=1.3e+02 Score=32.66 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=47.3
Q ss_pred eEEEEee--ccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCc---hhhhhhhccccCCCcceeEEEecccccccCC
Q 001237 321 VIGLILQ--RSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGG 395 (1117)
Q Consensus 321 ~Vgil~y--rs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~---~~v~~~f~~~~~~~~~vDaiIn~tgF~L~gg 395 (1117)
+|||++- ++.+. ...+.++.+++++.|++++- +..+.+.. ..++.. .. ..||+||-....+-..
T Consensus 1 ~igvv~~~~~~~~~---~~~~~gi~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~l-~~-----~~vdgii~~~~~~~~~- 69 (273)
T cd01541 1 NIGVITTYISDYIF---PSIIRGIESVLSEKGYSLLL-ASTNNDPERERKCLENM-LS-----QGIDGLIIEPTKSALP- 69 (273)
T ss_pred CeEEEeCCccchhH---HHHHHHHHHHHHHcCCEEEE-EeCCCCHHHHHHHHHHH-HH-----cCCCEEEEeccccccc-
Confidence 4787773 22322 36778899999999999974 33333321 123332 22 2589998643221100
Q ss_pred CCCCCchhHHHHhhhCCCcEEeE
Q 001237 396 PARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 396 pa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
.......+.+++.++||+..
T Consensus 70 ---~~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 70 ---NPNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred ---cccHHHHHHHHHCCCCEEEE
Confidence 11123345567889998854
No 41
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=34.61 E-value=79 Score=36.01 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHcC-CcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCCCC
Q 001237 335 DDSHYVAVIMELEARG-AKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1117)
Q Consensus 335 ~~~~~dalI~aLE~~G-l~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~ 399 (1117)
+..-.++|-++||.+. ..|. +...-+...+.+++.+..-......||++||..||+..|.-...
T Consensus 39 ~~~kL~~la~~l~~~~~v~v~-vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~ 103 (265)
T COG0300 39 REDKLEALAKELEDKTGVEVE-VIPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLEL 103 (265)
T ss_pred cHHHHHHHHHHHHHhhCceEE-EEECcCCChhHHHHHHHHHHhcCCcccEEEECCCcCCccchhhC
Confidence 5567788888998865 3332 22223332334444332211222469999999999887654433
No 42
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=34.31 E-value=3.3e+02 Score=33.12 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=76.6
Q ss_pred eEEEEeecccc-----ccCCChHHHHHHHHHHHcCCcEEEEEcCCCC-Cchhhh---hhhccccCCCcceeEEEeccccc
Q 001237 321 VIGLILQRSHI-----VTGDDSHYVAVIMELEARGAKVIPIFAGGLD-FAGPVE---RFFVDPVMKKPMVNSAISLTGFA 391 (1117)
Q Consensus 321 ~Vgil~yrs~~-----~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~-~~~~v~---~~f~~~~~~~~~vDaiIn~tgF~ 391 (1117)
+||++...-.. ...-.++...+++.|++.|..++ +...+. ....++ +.|.. ..+|.||-..
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vv--~~~~~~~~~~~~~~~~~~~~~-----~~~d~ii~~~--- 71 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVV--DKPEVTGTPDEARKAAEEFNE-----ANCDGLIVWM--- 71 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCceEE--ecCcccCCHHHHHHHHHHHhh-----cCCcEEEEcc---
Confidence 56666544331 11123456789999998888766 333333 222233 23332 2588887643
Q ss_pred ccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCH-HHHhcCCCCCChhhhhhheeccccCcce------eeEEEEeecC
Q 001237 392 LVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTT-EEWLNSTLGLHPIQVALQVALPELDGGL------EPIVFAGRDP 464 (1117)
Q Consensus 392 L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~-eeW~~s~~GL~p~~~~~~ValPElDG~I------~piv~~~~~~ 464 (1117)
.++|+ .......++.+++||+....-.-... ..|... .++ +.++|+-+.+ -.++. |...
T Consensus 72 ~tf~~----~~~~~~~~~~~~~Pvll~a~~~~~~~~~~~~~~-~s~--------~g~~~~~~~l~r~gi~~~~v~-g~~~ 137 (452)
T cd00578 72 HTFGP----AKMWIAGLSELRKPVLLLATQFNREIPDFMNLN-QSA--------CGLREFGNILARLGIPFKVVY-GHWK 137 (452)
T ss_pred ccccc----HHHHHHHHHhcCCCEEEEeCCCCCCCCchhhhh-cch--------hhhHHHHHHHHHcCCceeEEE-CCCC
Confidence 12222 23455678899999987653211111 233221 122 2334444333 12222 2111
Q ss_pred CCCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeec
Q 001237 465 RTGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFS 505 (1117)
Q Consensus 465 ~~~~~~pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~n 505 (1117)
. .-..++|+..++-+.-+-+||+ .||++|-.+
T Consensus 138 ---d-~~~~~~i~~~~raa~~~~~lr~-----~rig~iG~~ 169 (452)
T cd00578 138 ---D-EDVLRKIESWARAAAAVATLRG-----LRVGRFGDR 169 (452)
T ss_pred ---C-HHHHHHHHHHHHHHHHHHHhhc-----CceEEECCC
Confidence 0 1234566666666666777775 678887743
No 43
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=33.38 E-value=1.1e+02 Score=34.82 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=50.9
Q ss_pred CCeEEEEeecccc-ccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCC
Q 001237 319 APVIGLILQRSHI-VTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1117)
Q Consensus 319 ~p~Vgil~yrs~~-~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa 397 (1117)
+.+|+||+-...- -.-...--.++.++|++.|.+|+++-..+. ..+.+ + .+..+|++++.. .|..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~---~~~~~-l-----~~~~~d~vf~~l-----hG~~ 68 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK---ELVAK-L-----LELKPDKCFVAL-----HGED 68 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch---hHHHH-h-----hccCCCEEEEeC-----CCCC
Confidence 3579999874321 011123345789999999999988743321 11221 1 123589998843 2222
Q ss_pred CCCchhHHHHhhhCCCcEEeEe
Q 001237 398 RQDHPRAIEALRKLDVPYIVAL 419 (1117)
Q Consensus 398 ~~~~~~~~~~L~~LnVPvl~ai 419 (1117)
+.+ .....+|+.+|+||+-+-
T Consensus 69 ge~-~~i~~~le~~gip~~Gs~ 89 (296)
T PRK14569 69 GEN-GRVSALLEMLEIKHTSSS 89 (296)
T ss_pred CCC-hHHHHHHHHcCCCeeCCC
Confidence 333 235579999999998643
No 44
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=32.83 E-value=4.2e+02 Score=30.02 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=31.1
Q ss_pred CceEEEEeecCCCCC--CC-ccccCCCChHHHHHHHHHHHHHCCCCC
Q 001237 496 EKKLAITVFSFPPDK--GN-IGTAAYLNVFSSIFSVLKDLQRDGYNV 539 (1117)
Q Consensus 496 eKKVAIil~nyPp~~--g~-iGtAa~LDv~~Sl~~iL~~Lk~~GY~v 539 (1117)
..|||||=+..|... .+ .+.-.+.|..+++.+.+++||++|.|+
T Consensus 139 G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~ 185 (281)
T cd07409 139 GEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNK 185 (281)
T ss_pred CEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCE
Confidence 457888777665321 11 122467888999999999999999777
No 45
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=30.93 E-value=1.2e+02 Score=36.89 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=47.2
Q ss_pred eeeecCCCceeecCccccccccCCCCCCCcEEEEEEEcc-cchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHH
Q 001237 47 KCAVVGNGLFTQTSPEVRRIVPENRDNLPTVKIVYVVLE-AQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYK 125 (1117)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1117)
|.++.|+|-+ -+..-++-+.= ..+.-+.-.++++-.| +.-...+..-++++.+... ..+++.+. .
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~-~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~~v~~t-----------~ 67 (419)
T cd05296 2 KLTIIGGGSS-YTPELIEGLIR-RYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPIKVHLT-----------T 67 (419)
T ss_pred EEEEECCchH-hHHHHHHHHHh-ccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCeEEEEe-----------C
Confidence 4555566653 22222333221 1122223468888888 5555556666666666644 34555441 1
Q ss_pred HHHHHhhcCCEEEEeccc
Q 001237 126 TFCKDLENANIFIGSLIF 143 (1117)
Q Consensus 126 ~~~~~i~~adi~~~sllf 143 (1117)
..++++..||+||.++--
T Consensus 68 d~~~al~gadfVi~~~~v 85 (419)
T cd05296 68 DRREALEGADFVFTQIRV 85 (419)
T ss_pred CHHHHhCCCCEEEEEEee
Confidence 356799999999998764
No 46
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.87 E-value=1.3e+02 Score=30.59 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=47.1
Q ss_pred CcCCHHHHHHHhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhc
Q 001237 293 MYDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFV 372 (1117)
Q Consensus 293 ~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~ 372 (1117)
.|.+.+++.+...+ .+...|+|-.+ .+.-.....+++++|+++|...++|+++|.-..+..++|..
T Consensus 38 ~~~s~e~~v~aa~e----------~~adii~iSsl----~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~ 103 (132)
T TIGR00640 38 LFQTPEEIARQAVE----------ADVHVVGVSSL----AGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKE 103 (132)
T ss_pred CCCCHHHHHHHHHH----------cCCCEEEEcCc----hhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHH
Confidence 45667777765432 23345666332 33345667889999999999888899998654343444332
Q ss_pred cccCCCcceeEEEec
Q 001237 373 DPVMKKPMVNSAISL 387 (1117)
Q Consensus 373 ~~~~~~~~vDaiIn~ 387 (1117)
..||.++..
T Consensus 104 ------~Gvd~~~~~ 112 (132)
T TIGR00640 104 ------MGVAEIFGP 112 (132)
T ss_pred ------CCCCEEECC
Confidence 347777663
No 47
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=30.85 E-value=1.3e+02 Score=34.07 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=49.7
Q ss_pred eEEEEeecccc-ccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCCCC
Q 001237 321 VIGLILQRSHI-VTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1117)
Q Consensus 321 ~Vgil~yrs~~-~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~ 399 (1117)
+|+|||-...- -.-...-..+++++|++.|.+|.++.... ..+.. + .....+|+|+|.. .|..+.
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~----~~~~~-~----~~~~~~D~v~~~~-----~g~~ge 67 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDE----DFLKK-V----DQLKSFDVVFNVL-----HGTFGE 67 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCc----hHHHH-h----hhccCCCEEEEeC-----CCCCCC
Confidence 48888865321 01112345689999999999999886432 11111 1 1113589999864 222222
Q ss_pred CchhHHHHhhhCCCcEEeE
Q 001237 400 DHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~a 418 (1117)
+. ....+|+.+|+||+..
T Consensus 68 ~~-~~~~~le~~gip~~G~ 85 (299)
T PRK14571 68 DG-TLQAILDFLGIRYTGS 85 (299)
T ss_pred cc-HHHHHHHHcCCCccCC
Confidence 32 3557999999999865
No 48
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.68 E-value=1.5e+02 Score=33.46 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=48.6
Q ss_pred eEEEEeeccccccC-CChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCCCC
Q 001237 321 VIGLILQRSHIVTG-DDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g-~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~ 399 (1117)
+|+|++-..+-.-. ...-...++++|++.|.+|.+|-... ..+ +.+. ...+|+|++.. +|..+.
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~----~~~-~~~~-----~~~~D~v~~~~-----~g~~~~ 70 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE----DIA-AQLK-----ELGFDRVFNAL-----HGRGGE 70 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc----chH-HHhc-----cCCCCEEEEec-----CCCCCC
Confidence 68988844322111 12344789999999999999874321 112 2221 12589999863 121111
Q ss_pred CchhHHHHhhhCCCcEEeE
Q 001237 400 DHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~a 418 (1117)
+ .....+|+.+++||+..
T Consensus 71 ~-~~~~~~le~~gi~~~g~ 88 (304)
T PRK01372 71 D-GTIQGLLELLGIPYTGS 88 (304)
T ss_pred c-cHHHHHHHHcCCCccCC
Confidence 2 12446899999999854
No 49
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=30.38 E-value=3e+02 Score=33.73 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHc--------CCcEEEEEcCCCCCc------hhhh---hhhccccCCCcceeEEEecccccccCCCCCCC
Q 001237 338 HYVAVIMELEAR--------GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTGFALVGGPARQD 400 (1117)
Q Consensus 338 ~~dalI~aLE~~--------Gl~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~ 400 (1117)
.++++|+.++++ +..++||-+.|+... .+++ +.|.. .. .++--||+.+.... ..|
T Consensus 105 Di~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~--~~--~~~~~VNii~~~~~----~~D 176 (454)
T cd01973 105 DIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRSVVKTIAK--KG--APSGKLNVFTGWVN----PGD 176 (454)
T ss_pred CHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHHHHHHhcc--cC--CCCCcEEEECCCCC----hHH
Confidence 467777776542 677777776666432 1222 22322 11 12234665432121 235
Q ss_pred chhHHHHhhhCCCcEEeE
Q 001237 401 HPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 401 ~~~~~~~L~~LnVPvl~a 418 (1117)
..+-.++|+++|+-|...
T Consensus 177 ~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 177 VVELKHYLSEMDVEANIL 194 (454)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 566678999999999844
No 50
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=29.92 E-value=1.8e+02 Score=31.26 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=46.7
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCCCCC
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQD 400 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~ 400 (1117)
+||++..... -......++++-+++++.|++++-.. ...+.. ...+++.. . -...+|+||-.... .
T Consensus 1 ~Ig~i~~~~~-~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~-~~~~~~~~-l-~~~~vdgiii~~~~---------~ 66 (268)
T cd01575 1 LVAVLVPSLS-NSVFADVLQGISDVLEAAGYQLLLGN-TGYSPE-REEELLRT-L-LSRRPAGLILTGLE---------H 66 (268)
T ss_pred CEEEEeCCCc-chhHHHHHHHHHHHHHHcCCEEEEec-CCCCch-hHHHHHHH-H-HHcCCCEEEEeCCC---------C
Confidence 4787775321 11224566778889999999987433 333321 11122211 0 11358998875321 1
Q ss_pred chhHHHHhhhCCCcEEeE
Q 001237 401 HPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 401 ~~~~~~~L~~LnVPvl~a 418 (1117)
.......+++.++||+..
T Consensus 67 ~~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 67 TERTRQLLRAAGIPVVEI 84 (268)
T ss_pred CHHHHHHHHhcCCCEEEE
Confidence 124556778899999955
No 51
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=29.63 E-value=1.5e+02 Score=34.28 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=41.6
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCC-----Cc-----hhhhhhhccccCCCcceeEEEeccc
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLD-----FA-----GPVERFFVDPVMKKPMVNSAISLTG 389 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~-----~~-----~~v~~~f~~~~~~~~~vDaiIn~tg 389 (1117)
+|||+.--+.........+++-++.|+++|++|+.--....+ .+ ..+.++|.| +.||+|+...|
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~D-----p~i~aI~~~rG 75 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFAD-----PSIKAIIPTIG 75 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcC-----CCCCEEEECCc
Confidence 688887766543333577889999999999998854332111 11 124456665 45999998764
No 52
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=29.50 E-value=89 Score=34.25 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCCceeecCccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHh
Q 001237 52 GNGLFTQTSPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDL 131 (1117)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 131 (1117)
|=||-.....+....++.-. ..+.++.++|+. .....+...++.+ ...+++.++|.. ++...
T Consensus 75 GVGm~r~f~~e~~~~l~~l~--~~~~~v~ivTG~-la~~~l~~~~~~l-~~~~~~~v~V~~--------------V~N~f 136 (204)
T PF04459_consen 75 GVGMVRLFLDEWEEALRKLP--KKPRRVTIVTGV-LAYPFLKPLVEKL-NRIPGLEVEVVP--------------VKNRF 136 (204)
T ss_pred CeeEhHHHHHHHHHHHhhcC--CCCeeEEEEeeH-HHHHHHHHHHHHH-hccCCCeEEEEE--------------eecCC
Confidence 66787766666666666633 556678888885 4556678888888 566778888764 12233
Q ss_pred hcCCEEEEeccccHHHHHHHHHHHHHhhcCcCEEEecCChHHHH
Q 001237 132 ENANIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVM 175 (1117)
Q Consensus 132 ~~adi~~~sllf~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 175 (1117)
=..+|-++.||-..|+++.+.. .+..|.+++ |.+|
T Consensus 137 FG~~ItVaGLLTg~Dii~~L~~-----~~~~d~lll----P~~m 171 (204)
T PF04459_consen 137 FGGTITVAGLLTGQDIIEQLKG-----KELGDLLLL----PDVM 171 (204)
T ss_pred CCCCeEEeeCccHHHHHHHhCc-----CCCCCEEEE----CHHH
Confidence 3556889999999998666554 233467776 6777
No 53
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=29.36 E-value=1.7e+02 Score=31.94 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=46.4
Q ss_pred CeEEEEeeccc-----c-ccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEeccccccc
Q 001237 320 PVIGLILQRSH-----I-VTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALV 393 (1117)
Q Consensus 320 p~Vgil~yrs~-----~-~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ 393 (1117)
.+|||+.-+.. . ..-....+.++.+++++.|+.++-+....-+ ...+.+.+. ...+|+||-....
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~~-~~~~~~~l~-----~~~~dgiii~~~~--- 74 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSPD-RDWLARYLA-----SGRADGVILIGQH--- 74 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCchh-HHHHHHHHH-----hCCCCEEEEeCCC---
Confidence 47999985421 1 1112345567888888899998754332211 112222222 1358988764311
Q ss_pred CCCCCCCchhHHHHhhhCCCcEEeE
Q 001237 394 GGPARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 394 ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
......+.+++.|+||+..
T Consensus 75 ------~~~~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 75 ------DQDPLPERLAETGLPFVVW 93 (275)
T ss_pred ------CChHHHHHHHhCCCCEEEE
Confidence 1123456678899999843
No 54
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.63 E-value=1e+03 Score=28.68 Aligned_cols=216 Identities=19% Similarity=0.243 Sum_probs=111.7
Q ss_pred cCCChHHHHHHHHHHHc-CCcEEEEEcCCCCCc--------h--------h--hhhhhcccc-CCCcceeEEEecccccc
Q 001237 333 TGDDSHYVAVIMELEAR-GAKVIPIFAGGLDFA--------G--------P--VERFFVDPV-MKKPMVNSAISLTGFAL 392 (1117)
Q Consensus 333 ~g~~~~~dalI~aLE~~-Gl~vipvf~~gl~~~--------~--------~--v~~~f~~~~-~~~~~vDaiIn~tgF~L 392 (1117)
-||.++.=.|.+.|-++ |..|. +|+.-++.- . . |+.+=.. . ......|+||-+-|=-|
T Consensus 11 fGDIGVcWRLArqLa~e~g~~Vr-LwvDdl~af~~i~P~~~~~~~~q~~~gv~i~~W~~~-~~~~~~p~dvVIEaF~C~L 88 (374)
T PF10093_consen 11 FGDIGVCWRLARQLAAEHGQQVR-LWVDDLAAFARICPDLDPELSQQTIQGVEIRHWDAP-FPPDVEPADVVIEAFGCEL 88 (374)
T ss_pred CcchHHHHHHHHHHHHHhCCeEE-EEECCHHHHHHhCCCCCcccccceECCeEEEecCCc-ccCCCCCccEEEEecccCC
Confidence 37888888899999888 88776 676443210 0 0 1111110 1 22345778887533222
Q ss_pred cCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEeecCCCCc----
Q 001237 393 VGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRTGK---- 468 (1117)
Q Consensus 393 ~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~~~~~~~---- 468 (1117)
++..++.+++..-|.+ -+.+.|-|.|+|-++-.||...+-. + |...-..|=|....||-
T Consensus 89 --------P~~y~~~ma~~~~~p~-WiNLEYLSAE~Wve~~H~lpSp~~~----~----~l~K~FFfPGFt~~TGGLLrE 151 (374)
T PF10093_consen 89 --------PESYLAAMAARRPPPL-WINLEYLSAEDWVEGCHGLPSPQPR----L----GLTKYFFFPGFTPKTGGLLRE 151 (374)
T ss_pred --------CHHHHHHHhccCCCCe-EEEccccCHhHHHHHhcCCCCCCCC----C----CceEEEECCCcCCCCcceecc
Confidence 3444455533343333 3446899999999999999764321 1 11122222244445541
Q ss_pred cccchHHHHHH---HHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC-CCCC
Q 001237 469 AHALHKRVEQL---CTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE-GLPE 544 (1117)
Q Consensus 469 ~~pipeRi~~l---a~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~-~~P~ 544 (1117)
...+..|-..- +.+..=|.+|.-.+....-.-|-+|.||.. -+..+|+.|++.+=.|. -+|+
T Consensus 152 ~~l~~~r~~f~~~~~~~~~~~~~lg~~~~~~~~~~vslF~Ye~~--------------~l~~ll~~~~~~~~pv~llvp~ 217 (374)
T PF10093_consen 152 PDLLARRDAFQADPAARAAFLRRLGLPEPEPGALRVSLFCYENA--------------ALASLLDAWAASPKPVHLLVPE 217 (374)
T ss_pred CcHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCCeEEEEEeCCch--------------HHHHHHHHHhcCCCCeEEEecC
Confidence 22344444444 347777777775443344445667788732 25667777777665552 1243
Q ss_pred C--HHHHHHHHHh---ccccccCCCC--cccccccCHHHHhhhh
Q 001237 545 T--SEALIEEIIH---DKEAQFSSPN--LNIAYKMGVREYQSLT 581 (1117)
Q Consensus 545 ~--~~~L~~~ll~---~~~~~~~~~~--~~~~~~~~~~~Y~~~~ 581 (1117)
. ...+...+-. .....+.... +.+...++-++|.++.
T Consensus 218 g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LL 261 (374)
T PF10093_consen 218 GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLL 261 (374)
T ss_pred CccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHH
Confidence 2 1223222210 0011222221 2334568899998764
No 55
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=28.48 E-value=1.1e+02 Score=36.16 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHcCCcEEEEE-cCCCCCchhhhhhhccccCCCcceeEEEe-cccccccCCCCCCCchhHHHHhhhCCCc
Q 001237 337 SHYVAVIMELEARGAKVIPIF-AGGLDFAGPVERFFVDPVMKKPMVNSAIS-LTGFALVGGPARQDHPRAIEALRKLDVP 414 (1117)
Q Consensus 337 ~~~dalI~aLE~~Gl~vipvf-~~gl~~~~~v~~~f~~~~~~~~~vDaiIn-~tgF~L~ggpa~~~~~~~~~~L~~LnVP 414 (1117)
++-..+++.|.+.+.-|++|- -.-++..+.+++.+... +....+|.||. +.-||. +.--+..|+++++|
T Consensus 29 ~~s~~i~~~l~~~~~~p~~vv~k~~~~t~~~i~~~~~~a-n~~~~c~gvi~wMhTfSp--------akmwI~gl~~l~kP 99 (359)
T PF02610_consen 29 EHSREIVDGLNASGSLPVKVVFKPVVTTPEEITRVCKEA-NADEDCDGVITWMHTFSP--------AKMWIPGLQRLQKP 99 (359)
T ss_dssp HHHHHHHHHHHHHS--SSEEEE---B-SHHHHHHHHHHH-HH-TTEEEEEEEESS-----------THHHHHHHHH--S-
T ss_pred HHHHHHHHHHhhcCCCceEEEecCccCCHHHHHHHHHHh-hccCCccEEeehhhhhcc--------HHHHHHHHHHhCCC
Confidence 444578999999986666654 44456556677666541 22345777776 344543 23456789999999
Q ss_pred EEeEecCCCCCHHHHhcCCCCCC-hhhhhhheeccccCcce------eeEEEEeecCCCCccccchHHHHHHHHHHHHHH
Q 001237 415 YIVALPLVFQTTEEWLNSTLGLH-PIQVALQVALPELDGGL------EPIVFAGRDPRTGKAHALHKRVEQLCTRAIRWG 487 (1117)
Q Consensus 415 vl~ai~l~~qt~eeW~~s~~GL~-p~~~~~~ValPElDG~I------~piv~~~~~~~~~~~~pipeRi~~la~ra~~W~ 487 (1117)
+++...-....+ .|..=+.+.- --|.+- ..||+-... .-+|+|--+ -.-...||+.-++-|..|.
T Consensus 100 llhl~tQ~~~~i-p~~~iDmd~MnlNqsAH--gdrEfg~i~~R~gi~~kvV~G~w~-----D~~v~~~I~~W~rAA~~~~ 171 (359)
T PF02610_consen 100 LLHLHTQPNRAI-PWDTIDMDFMNLNQSAH--GDREFGFIFSRMGIPRKVVVGHWQ-----DEEVWAEIGDWMRAAAAWA 171 (359)
T ss_dssp EEEEE--SSSS---TTT--HHHHHSS-HHH--HHHHHHHHHHHTT--EEEEES-TT------HHHHHHHHHHHHHHHHHH
T ss_pred eEEeecccccCC-CcccCCHHHHHHhhccc--ccHHHHHHHHHhCCCcCeEeeeCC-----CHHHHHHHHHHHHHHHHHH
Confidence 998875432222 3332211000 001111 136765533 233333221 1235788999999999999
Q ss_pred HcccCCCCCceEEEEeecCC
Q 001237 488 ELKRKTKAEKKLAITVFSFP 507 (1117)
Q Consensus 488 ~LR~kpnaeKKVAIil~nyP 507 (1117)
.+|+. |||.+-+||+
T Consensus 172 ~~r~~-----kv~rfGdnmr 186 (359)
T PF02610_consen 172 ELRHL-----KVGRFGDNMR 186 (359)
T ss_dssp HHTT------EEEEES---T
T ss_pred HhcCC-----eEEEECCCcc
Confidence 99965 8999999987
No 56
>PHA02114 hypothetical protein
Probab=28.10 E-value=62 Score=31.40 Aligned_cols=49 Identities=27% Similarity=0.486 Sum_probs=31.8
Q ss_pred cCCCCCCcCCHHHHHHHhccCCCCccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEE
Q 001237 287 HPLAPCMYDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIP 355 (1117)
Q Consensus 287 HP~~~~~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vip 355 (1117)
.|..|.+|+|+..|.++ +||-+=. .+-.+ .++.-.+|.+||+.|+||+.
T Consensus 66 ~patpemf~dl~~fd~~----------------gtivldv--n~ams--r~pwi~v~s~le~~g~~vva 114 (127)
T PHA02114 66 EPATPEMFDDLGAFDQY----------------GTIVLDV--NYAMS--RAPWIKVISRLEEAGFNVVA 114 (127)
T ss_pred cCCCHHHHhhhhhHhhc----------------CeEEEEe--hhhhc--cCcHHHHHHHHHhcCceeee
Confidence 45667789998876542 3443322 22222 34556699999999999985
No 57
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=27.86 E-value=93 Score=35.02 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEE---------------cCCCCCchhhhhhhccccCCCcceeEEEecc-cccccCCCCC
Q 001237 335 DDSHYVAVIMELEARGAKVIPIF---------------AGGLDFAGPVERFFVDPVMKKPMVNSAISLT-GFALVGGPAR 398 (1117)
Q Consensus 335 ~~~~~dalI~aLE~~Gl~vipvf---------------~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~t-gF~L~ggpa~ 398 (1117)
-|.-=-.|++.|.++|..++.-. .+++...+.+++|+.+ ..|++||..| .|+..
T Consensus 10 GT~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~-----~~i~~VIDATHPfA~~----- 79 (248)
T PRK08057 10 GTSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLRE-----EGIDLVIDATHPYAAQ----- 79 (248)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHH-----CCCCEEEECCCccHHH-----
Confidence 35555668888888887555322 2333222345566643 3599999976 56542
Q ss_pred CCchhHHHHhhhCCCcEEeEec
Q 001237 399 QDHPRAIEALRKLDVPYIVALP 420 (1117)
Q Consensus 399 ~~~~~~~~~L~~LnVPvl~ai~ 420 (1117)
-+..+.++-+++|+||+.-..
T Consensus 80 -is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 80 -ISANAAAACRALGIPYLRLER 100 (248)
T ss_pred -HHHHHHHHHHHhCCcEEEEeC
Confidence 234566788999999997753
No 58
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=26.82 E-value=4e+02 Score=35.76 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=51.7
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc-----CCcEEEEEcCCCCCc------hhhh---hhhccccCCCcceeEEEe
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAIS 386 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~-----Gl~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~vDaiIn 386 (1117)
.|+|+.--..-+-| ..++++|++++++ |..||||-+.|+..+ .+++ +.|..+ .. ...--||
T Consensus 574 ~I~V~tTc~~eiIG--DDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~aiv~~~~~~--~~-~~~~~VN 648 (917)
T PRK14477 574 VIGVMTTGLTETMG--DDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAIVATLPEP--GE-RIPGQVN 648 (917)
T ss_pred EEEEECCchHhhhh--cCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHHHHHhccc--cC-CCCCcEE
Confidence 57776544333333 3678999999875 889999988776532 1222 233321 11 1123455
Q ss_pred cc-cccccCCCCCCCchhHHHHhhhCCCcEEe
Q 001237 387 LT-GFALVGGPARQDHPRAIEALRKLDVPYIV 417 (1117)
Q Consensus 387 ~t-gF~L~ggpa~~~~~~~~~~L~~LnVPvl~ 417 (1117)
+. ++.+. ..|-.+-.++|+++++.|+.
T Consensus 649 li~~~~~~----~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 649 ILPGAHLT----PADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred EeCCCCCC----hhhHHHHHHHHHHcCCceEE
Confidence 54 33331 13556677899999999974
No 59
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.65 E-value=2.3e+02 Score=30.87 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=47.1
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCc---hhhhhhhccccCCCcceeEEEecccccccCCCC
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~---~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa 397 (1117)
+|||++.... ..-....+.++.+++++.|.+++ ++....+.. ..++. +.. ..||+||-..+.
T Consensus 1 ~Igvv~~~~~-~~~~~~~~~~i~~~a~~~g~~~~-~~~~~~~~~~~~~~i~~-l~~-----~~vdgii~~~~~------- 65 (269)
T cd06281 1 TIGCLVSDIT-NPLLAQLFSGAEDRLRAAGYSLL-IANSLNDPERELEILRS-FEQ-----RRMDGIIIAPGD------- 65 (269)
T ss_pred CEEEEecCCc-cccHHHHHHHHHHHHHHcCCEEE-EEeCCCChHHHHHHHHH-HHH-----cCCCEEEEecCC-------
Confidence 4788774311 11124567788899999999987 443333321 12222 221 258998864321
Q ss_pred CCCchhHHHHhhhCCCcEEeEe
Q 001237 398 RQDHPRAIEALRKLDVPYIVAL 419 (1117)
Q Consensus 398 ~~~~~~~~~~L~~LnVPvl~ai 419 (1117)
.+.+...+.+++.|+||+..-
T Consensus 66 -~~~~~~~~~~~~~~ipvV~i~ 86 (269)
T cd06281 66 -ERDPELVDALASLDLPIVLLD 86 (269)
T ss_pred -CCcHHHHHHHHhCCCCEEEEe
Confidence 112234557788899998553
No 60
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=26.55 E-value=37 Score=39.23 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=36.6
Q ss_pred EeccccccCChhHHHHHHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchhh
Q 001237 1031 WGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFR 1089 (1117)
Q Consensus 1031 Wgtdtmrt~Ge~iAQiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFR 1089 (1117)
|..-|..++|--.-+-|.-. .-...+++..=++=.|+|+.||-+||+|+|||+.-
T Consensus 141 ~~~Tt~~sE~~~ylpyl~k~----l~e~Gvef~~r~v~~l~E~~~~~~DVivNCtGL~a 195 (342)
T KOG3923|consen 141 IHFTTYLSEGPKYLPYLKKR----LTENGVEFVQRRVESLEEVARPEYDVIVNCTGLGA 195 (342)
T ss_pred eeEEEeeccchhhhHHHHHH----HHhcCcEEEEeeeccHHHhccCCCcEEEECCcccc
Confidence 33445666665555544311 11233556666788899999999999999999863
No 61
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=26.22 E-value=1.5e+02 Score=34.28 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=44.7
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCC
Q 001237 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1117)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggp 396 (1117)
.++.+|||++...- ..+....++.|.+.|+++|..++.++.+-+... -+. +=+.||+.|++..=
T Consensus 207 ~~a~~~GIiv~tl~-~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~-kL~--------nf~eid~fV~~aCP------ 270 (307)
T PF01866_consen 207 KDAKTFGIIVGTLG-GQGYLELIKRLKKLLKKAGKKSYTLSVGEINPA-KLA--------NFPEIDAFVQIACP------ 270 (307)
T ss_dssp TT--EEEEEEE-ST-TT--HHHHHHHHHHHHHTT-EEEEEEESS--GG-GGT--------TS---SEEEE-S-T------
T ss_pred hcCCEEEEEEecCC-CCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHH-HHh--------cCcccCEEEEecCC------
Confidence 35689999987433 355678889999999999999999888766521 111 11248999987542
Q ss_pred CCCCchhHHHHhhhCCCcEEeEe
Q 001237 397 ARQDHPRAIEALRKLDVPYIVAL 419 (1117)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~ai 419 (1117)
.-+....++...||+.+.
T Consensus 271 -----r~~idd~~~f~kPvltP~ 288 (307)
T PF01866_consen 271 -----RLSIDDSKDFYKPVLTPY 288 (307)
T ss_dssp -----HHHHT--S--SS-EE-HH
T ss_pred -----CcccCchhhcCCcccCHH
Confidence 233445578888998764
No 62
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.07 E-value=2.2e+02 Score=30.35 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=39.4
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHh--hcCCEEEEecccc
Q 001237 77 VKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDL--ENANIFIGSLIFV 144 (1117)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~adi~~~sllf~ 144 (1117)
.++.++ ..-...++++++.|++++|++.+. ++ ..-. +++..+++.+.| +++|++|..|=..
T Consensus 49 ~~vfll---G~~~~v~~~~~~~l~~~yP~l~i~--g~-~g~f-~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 49 LPIFLY---GGKPDVLQQLKVKLIKEYPKLKIV--GA-FGPL-EPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred CeEEEE---CCCHHHHHHHHHHHHHHCCCCEEE--EE-CCCC-ChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 456666 556667888999999999986653 33 2222 233334444433 6799999987653
No 63
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=25.75 E-value=3.9e+02 Score=32.14 Aligned_cols=106 Identities=11% Similarity=0.028 Sum_probs=61.7
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc-C-CcEEEEEcCCCCCc-------h---hhhhhhccccCCCcceeEEEecc
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-G-AKVIPIFAGGLDFA-------G---PVERFFVDPVMKKPMVNSAISLT 388 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~-G-l~vipvf~~gl~~~-------~---~v~~~f~~~~~~~~~vDaiIn~t 388 (1117)
.|+|+.-=..-+-| ..+++++++++++ + +.|+|+-+.|+... . ++-+.+...........--||+.
T Consensus 91 ~i~V~~tc~~~liG--dDi~~v~~~~~~~~~~~~vi~v~tpgf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNli 168 (415)
T cd01977 91 RMTVYTTCTTALIG--DDIKAVAKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYI 168 (415)
T ss_pred EEEEECCCchhhhc--CCHHHHHHHHHHhcCCCeEEEEeCCCcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEE
Confidence 45555544443344 3688999999865 3 77999966665321 0 12233332111111122346665
Q ss_pred cccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 389 GFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 389 gF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
|.... ..|..+-.++|+++|+.+...++ ...+.+++++.+
T Consensus 169 G~~~~----~~d~~ei~~lL~~~Gl~v~~~~~-~~~t~~ei~~~~ 208 (415)
T cd01977 169 GDYNI----QGDTEVLQKYFERMGIQVLSTFT-GNGTYDDLRWMH 208 (415)
T ss_pred ccCCC----cccHHHHHHHHHHcCCeEEEEEC-CCCCHHHHHhcc
Confidence 53221 12445677899999999987775 468899999754
No 64
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=25.74 E-value=3.7e+02 Score=32.98 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=39.9
Q ss_pred HHHHHHHHHHH--------cCCcEEEEEcCCCCCc------hhhh---hhhccccCCCcceeEEEecccccccCCCCCCC
Q 001237 338 HYVAVIMELEA--------RGAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTGFALVGGPARQD 400 (1117)
Q Consensus 338 ~~dalI~aLE~--------~Gl~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~ 400 (1117)
.++++|++.++ .|..++||-+.|+..+ .+++ +.+..+ .. ...--||+.+..+. ..|
T Consensus 108 Di~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~G~~~a~~ali~~~~~~-~~--~~~~~VNii~~~~~----~gD 180 (457)
T TIGR02932 108 DIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVTGYAECVKSVIKTIAAK-KG--EPSGKLNVFPGWVN----PGD 180 (457)
T ss_pred CHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHHHHHHHHHHHHHHHhhc-cC--CCCCcEEEECCCCC----hHH
Confidence 46677776532 2788888888776532 1222 223221 11 12224565432121 134
Q ss_pred chhHHHHhhhCCCcEEeE
Q 001237 401 HPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 401 ~~~~~~~L~~LnVPvl~a 418 (1117)
-.+-.++|+++|+-|...
T Consensus 181 ~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 181 VVLLKHYFSEMGVDANIL 198 (457)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 556678999999998753
No 65
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.64 E-value=2.2e+02 Score=29.95 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=38.5
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHH--HhhcCCEEEEeccc
Q 001237 77 VKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCK--DLENANIFIGSLIF 143 (1117)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~adi~~~sllf 143 (1117)
.|+.++ ..-...++++++.+++.+|++.+. ++...-..+ +..+++.+ .-.++|+||..|=.
T Consensus 47 ~~v~ll---G~~~~~~~~~~~~l~~~yp~l~i~--g~~~g~~~~-~~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 47 LRVFLL---GAKPEVLEKAAERLRARYPGLKIV--GYHHGYFGP-EEEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred CeEEEE---CCCHHHHHHHHHHHHHHCCCcEEE--EecCCCCCh-hhHHHHHHHHHHcCCCEEEEECCC
Confidence 566666 566777788899999999986654 322222221 22222444 33579999998765
No 66
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=25.64 E-value=4.3e+02 Score=32.40 Aligned_cols=88 Identities=23% Similarity=0.244 Sum_probs=47.9
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc---------CCcEEEEEcCCCCCc------hhhhhh---hccccCCCccee
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR---------GAKVIPIFAGGLDFA------GPVERF---FVDPVMKKPMVN 382 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~---------Gl~vipvf~~gl~~~------~~v~~~---f~~~~~~~~~vD 382 (1117)
.|+|+.--..-+-| ..++++|++++++ +..++||-+.|+..+ .+++.+ |..+ .+ ..
T Consensus 96 ~i~v~ttc~~eiiG--DDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy~~a~~ali~~~~~~--~~--~~ 169 (461)
T TIGR02931 96 VVPIITTCSTEIIG--DDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITGYDVAVHDFVKHFAKK--DK--PN 169 (461)
T ss_pred EEEEECCchHHhhh--cCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHccC--CC--CC
Confidence 45555433332223 3567888888764 567888876666432 122222 2221 11 12
Q ss_pred EEEecccccccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001237 383 SAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 383 aiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
--||+.+..+. ..|..+-.++|+++++-+...
T Consensus 170 ~~VNlig~~~~----~~D~~elk~lL~~~Gl~v~~l 201 (461)
T TIGR02931 170 DKINLITGWVN----PGDVKELKHLLEEMDIEANVL 201 (461)
T ss_pred CcEEEECCCCC----hhhHHHHHHHHHHcCCceEEe
Confidence 33565543222 235566778999999998843
No 67
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=25.62 E-value=1.2e+02 Score=28.11 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.3
Q ss_pred cCChhhHHHHHHHhhcCCEEEE
Q 001237 118 LRDVDTYKTFCKDLENANIFIG 139 (1117)
Q Consensus 118 ~~~~~~~~~~~~~i~~adi~~~ 139 (1117)
.++...++-|.+.|.+||++|+
T Consensus 37 a~~~~~~~~cl~~v~~cDifI~ 58 (83)
T PF13271_consen 37 ASDQSPLEICLKEVDECDIFIL 58 (83)
T ss_pred CCCCCHHHHHHHHHhhCCEEEE
Confidence 3455678899999999999988
No 68
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=25.13 E-value=1.5e+02 Score=34.54 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCeEEEEeecccc---ccCCChHHHHHHHHHHHcCCcEEEEEcCCCC-C--ch----hh----------------hhhhc
Q 001237 319 APVIGLILQRSHI---VTGDDSHYVAVIMELEARGAKVIPIFAGGLD-F--AG----PV----------------ERFFV 372 (1117)
Q Consensus 319 ~p~Vgil~yrs~~---~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~-~--~~----~v----------------~~~f~ 372 (1117)
+.+|||||-...- +| ..--.+++++|.+.|.+|+||+...-. . .+ .+ ..++.
T Consensus 3 ~~~i~vl~GG~S~E~evS--l~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVS--VKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLV 80 (343)
T ss_pred CcEEEEEECCCCCchHHH--HHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccc
Confidence 3579999976321 11 011236889999999999999875310 0 00 00 00010
Q ss_pred ccc--CCCcceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001237 373 DPV--MKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 373 ~~~--~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
... .....+|++++.. .|+.+.|. ..+.+|+.+|+||+-+
T Consensus 81 ~~~~~~~~~~~d~vf~~l-----hG~~gedg-~iq~lle~~gipy~G~ 122 (343)
T PRK14568 81 LEQGEYETIRLDVVFPVL-----HGKLGEDG-AIQGLLELSGIPYVGC 122 (343)
T ss_pred cCccccccccCCEEEEcC-----CCCCCCch-HHHHHHHHcCCCccCC
Confidence 000 0123578887753 33334443 3557999999999854
No 69
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=24.90 E-value=2.6e+02 Score=31.84 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHHHhccCC-ccEEEEEehhh--hcCCh-hhHHHHHHHh-hcCCEEEEeccccHHHHHHHHHHHHHhhcCcC---EEEec
Q 001237 97 QALNQQVNY-ASYEVVGYLVE--ELRDV-DTYKTFCKDL-ENANIFIGSLIFVEELALKIKAAVEKERDRLD---AVLVF 168 (1117)
Q Consensus 97 ~~l~~~~~~-~~~~~~~~~~~--~~~~~-~~~~~~~~~i-~~adi~~~sllf~~~~~~~~~~~v~~~~~~~~---~~~~~ 168 (1117)
+.+++..+. ..+.+.+|-.. ...|. ..++++++-+ ++||+||.-+.|+-+.+..+.+.++..-..+. .++.+
T Consensus 131 ~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~p~ 210 (287)
T PF02219_consen 131 RLIRQEYGDDFSIGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIMPL 210 (287)
T ss_dssp HHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE-H
T ss_pred HHHHHhcCcccccccccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEecc
Confidence 344433332 45777776532 22232 3477887766 68999999999999998888888877544333 23344
Q ss_pred CChHHHHHhh
Q 001237 169 PSMPEVMRLN 178 (1117)
Q Consensus 169 ~s~~~~~~~t 178 (1117)
.|.-.+++++
T Consensus 211 ~s~~~~~~~~ 220 (287)
T PF02219_consen 211 TSAKSARFLA 220 (287)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4554555443
No 70
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=23.93 E-value=2.2e+02 Score=31.55 Aligned_cols=79 Identities=9% Similarity=-0.014 Sum_probs=37.8
Q ss_pred CccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhccC--CccEEEEEehhhhc-----CChhhHHHHHHHhh
Q 001237 60 SPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVN--YASYEVVGYLVEEL-----RDVDTYKTFCKDLE 132 (1117)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~ 132 (1117)
.|..|-+.+.. +....+||++|++.....|.....++.+.+..+ +.++++.-+..-.+ .++....++.+.++
T Consensus 11 ~~~~~~~~~~~-~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~ 89 (219)
T TIGR02690 11 EPALRPLFSAT-HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSE 89 (219)
T ss_pred ccchhhccCCC-CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHH
Confidence 34444444432 444558999998866555544433443333322 34555442211011 11224455566666
Q ss_pred cCCEEEE
Q 001237 133 NANIFIG 139 (1117)
Q Consensus 133 ~adi~~~ 139 (1117)
.||.||.
T Consensus 90 ~ADgvii 96 (219)
T TIGR02690 90 WSEGQVW 96 (219)
T ss_pred hCCEEEE
Confidence 6665543
No 71
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=23.89 E-value=67 Score=35.69 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=28.5
Q ss_pred eEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001237 498 KLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1117)
Q Consensus 498 KVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 540 (1117)
||.|+.+.|||..+..++ .+.++.+.|.+.||+|.
T Consensus 1 kil~~~~~~~p~~~G~~~--------~~~~l~~~L~~~g~~v~ 35 (374)
T cd03817 1 KIGIFTDTYLPQVNGVAT--------SIRRLAEELEKRGHEVY 35 (374)
T ss_pred CeeEeehhccCCCCCeeh--------HHHHHHHHHHHcCCeEE
Confidence 688999999987664443 67889999999999994
No 72
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=23.82 E-value=1e+02 Score=37.19 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=64.5
Q ss_pred CCCCCCCCC-CCCCCCCCCcccccCCCCCCCHHH------HHHHHHHHHHHHHHH----HhhcCCCCCceEEEEEEeccc
Q 001237 967 PGPGGDPIR-NPKVLPTGKNIHALDPQAIPTTAA------MQSAKVVVDRLIERQ----KVDNGGKYPETVALVLWGTDN 1035 (1117)
Q Consensus 967 PgpgGdp~R-~pdvLPTGRNfys~DP~~iPT~aA------w~~G~~lAe~lL~~y----~~e~~G~yPe~va~vLWgtdt 1035 (1117)
+|.|+..+- +|.. +||++...=|.. .++.| |..=..-+.++|..| +.+..|+.|-+.. -+||--.
T Consensus 150 ~gls~~i~dtdP~~--~G~~i~~~~P~~-~~~~A~~ta~~ln~~~~~~~~iL~~HpvN~~R~~~G~~paN~i-wl~G~G~ 225 (396)
T TIGR00306 150 PGLSDKVSDNDPKD--IGKKVKAILPLA-GSEEAKKTAELLNELMLESAEVLQNHPINTKRAKKGKGPANMI-LPRGAGR 225 (396)
T ss_pred CCCCCCcCCCCccc--ccCccccccCCC-CchhHHHHHHHHHHHHHHHHHHHhcCcchHHHHhcCCCCceEE-EecCCCC
Confidence 344566552 3644 899996665531 23444 433344455666655 1234588887755 5787665
Q ss_pred cccCChhHHHHHHH----hCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchhhhhHHHHHH
Q 001237 1036 IKTYGESLAQVLWM----IGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQVL 1097 (1117)
Q Consensus 1036 mrt~Ge~iAQiL~L----lGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~ 1097 (1117)
+..=.++.+-.-| +..-|.+.+-++..|+++|+... .+|-+...|-...+
T Consensus 226 -~p~l~~f~er~gl~~a~ia~~~l~kGLa~~~Gm~~~~v~g-----------atg~~dt~~~~k~~ 279 (396)
T TIGR00306 226 -MPRVESFKERYGLRGAMIAEVDLIKGLARLIGMDVIRVEG-----------ATGGIDTDYRGKVR 279 (396)
T ss_pred -CCCCCCHHHhcCCceEEEechHHHHHHHHHcCCeeecCCc-----------ccccccccHHHHHH
Confidence 5555555555322 22334444567889999998654 23455555555554
No 73
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=23.65 E-value=1.8e+02 Score=33.96 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=49.4
Q ss_pred EEeeccccccCCChHHHHHHHHHHHcCCcEEEEE-cCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCCCCCch
Q 001237 324 LILQRSHIVTGDDSHYVAVIMELEARGAKVIPIF-AGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHP 402 (1117)
Q Consensus 324 il~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf-~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~ 402 (1117)
++++...... ...+.+.+.|+++|+.+. ++ ..+-...+.+++.... -.+..+|+||.. +||.. -|..
T Consensus 26 livt~~~~~~---~~~~~v~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~~~--~~~~~~D~IIav-----GGGS~-iD~a 93 (351)
T cd08170 26 LIIADEFVLD---LVGAKIEESLAAAGIDAR-FEVFGGECTRAEIERLAEI--ARDNGADVVIGI-----GGGKT-LDTA 93 (351)
T ss_pred EEEECHHHHH---HHHHHHHHHHHhCCCeEE-EEEeCCcCCHHHHHHHHHH--HhhcCCCEEEEe-----cCchh-hHHH
Confidence 3444544433 688999999999999875 22 1221111223332211 112368999873 44432 3444
Q ss_pred hHHHHhhhCCCcEEeEecCCCCCHHHH
Q 001237 403 RAIEALRKLDVPYIVALPLVFQTTEEW 429 (1117)
Q Consensus 403 ~~~~~L~~LnVPvl~ai~l~~qt~eeW 429 (1117)
+++..+ +++|++ ++|....|=.+|
T Consensus 94 K~ia~~--~~~P~i-aIPTTagTgse~ 117 (351)
T cd08170 94 KAVADY--LGAPVV-IVPTIASTDAPT 117 (351)
T ss_pred HHHHHH--cCCCEE-EeCCccccCccc
Confidence 555544 578977 666544444444
No 74
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=23.57 E-value=44 Score=35.29 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceEEEEEEeccccccCChhHHHHHHHhCCeeeeCCCCC-------cceeEEecccccC
Q 001237 1002 SAKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGR-------VNRVEPVSLEELG 1074 (1117)
Q Consensus 1002 ~G~~lAe~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAQiL~LlGvrPvwd~~Gr-------V~g~ElIPL~ELg 1074 (1117)
.|+-+.|.+++.- +=...-+.++|+=-.. =|..+|+.|.-+|++..--+..- ..|+++.+++|.=
T Consensus 5 ~g~S~~d~i~r~t----~~~l~Gk~vvV~GYG~----vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~ 76 (162)
T PF00670_consen 5 TGQSLVDGIMRAT----NLMLAGKRVVVIGYGK----VGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEAL 76 (162)
T ss_dssp HHHHHHHHHHHHH-----S--TTSEEEEE--SH----HHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHT
T ss_pred cchhHHHHHHhcC----ceeeCCCEEEEeCCCc----ccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHH
Confidence 3555555555332 2234445555542111 27889999999999976533222 3499999999975
Q ss_pred CCcceEEEecCch
Q 001237 1075 RPRIDVVVNCSGV 1087 (1117)
Q Consensus 1075 RPRIDVvv~iSGi 1087 (1117)
++.|++++.+|-
T Consensus 77 -~~adi~vtaTG~ 88 (162)
T PF00670_consen 77 -RDADIFVTATGN 88 (162)
T ss_dssp -TT-SEEEE-SSS
T ss_pred -hhCCEEEECCCC
Confidence 489999999994
No 75
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=23.45 E-value=2.6e+02 Score=30.21 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=46.0
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCc---hhhhhhhccccCCCcceeEEEecccccccCCCC
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~---~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa 397 (1117)
+|||++-... ..--...+..+-+++++.|++++- +...-+.. ..++. +.. ..||+||-... .
T Consensus 1 ~i~vv~p~~~-~~~~~~~~~~i~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-l~~-----~~vdgiii~~~-------~ 65 (268)
T cd06273 1 TIGAIVPTLD-NAIFARVIQAFQETLAAHGYTLLV-ASSGYDLDREYAQARK-LLE-----RGVDGLALIGL-------D 65 (268)
T ss_pred CeEEEeCCCC-CchHHHHHHHHHHHHHHCCCEEEE-ecCCCCHHHHHHHHHH-HHh-----cCCCEEEEeCC-------C
Confidence 5788875321 111245667888999999999884 43332221 11222 221 24898885311 1
Q ss_pred CCCchhHHHHhhhCCCcEEeE
Q 001237 398 RQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 398 ~~~~~~~~~~L~~LnVPvl~a 418 (1117)
..+...+.+++.|+|++..
T Consensus 66 --~~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 66 --HSPALLDLLARRGVPYVAT 84 (268)
T ss_pred --CCHHHHHHHHhCCCCEEEE
Confidence 1234556788899999864
No 76
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=23.19 E-value=1e+03 Score=28.17 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCC-cEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccC
Q 001237 316 GPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGA-KVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVG 394 (1117)
Q Consensus 316 ~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl-~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~g 394 (1117)
..+.-+|||...-+| ..=.+-++.+.++|.+.|. |+.-.+-++.......+..-.. .....+|+||-.+
T Consensus 27 ~~~~~~VaI~~~veH--paLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarq--l~~~~~dviv~i~------ 96 (322)
T COG2984 27 AADQITVAITQFVEH--PALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQ--LVGDKPDVIVAIA------ 96 (322)
T ss_pred cccceeEEEEEeecc--hhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHH--hhcCCCcEEEecC------
Q ss_pred CCCCCCchhHHHHhh-hCCCcEEeEe---cCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEeecCCCCccc
Q 001237 395 GPARQDHPRAIEALR-KLDVPYIVAL---PLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRTGKAH 470 (1117)
Q Consensus 395 gpa~~~~~~~~~~L~-~LnVPvl~ai---~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~~~~~~~~~~~ 470 (1117)
.+.++.+.+ -.|+||+-+. +...+-..+|+.....++... ...
T Consensus 97 ------tp~Aq~~~s~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvs---------------------------D~~ 143 (322)
T COG2984 97 ------TPAAQALVSATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVS---------------------------DLL 143 (322)
T ss_pred ------CHHHHHHHHhcCCCCEEEEccCchhhccCCccccCCCCceeecC---------------------------Ccc
Q ss_pred cchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHH-HHHCCCCC
Q 001237 471 ALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKD-LQRDGYNV 539 (1117)
Q Consensus 471 pipeRi~~la~ra~~W~~LR~kpnaeKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~-Lk~~GY~v 539 (1117)
|+.++++.+ +..-+.=|||.++| -|++.|.= |+.+.|++ +++.|+.|
T Consensus 144 ~v~q~i~li----------k~~~Pnak~Igv~Y---~p~E~ns~---------~l~eelk~~A~~~Gl~v 191 (322)
T COG2984 144 PVAQQIELI----------KALLPNAKSIGVLY---NPGEANSV---------SLVEELKKEARKAGLEV 191 (322)
T ss_pred hHHHHHHHH----------HHhCCCCeeEEEEe---CCCCcccH---------HHHHHHHHHHHHCCCEE
No 77
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=22.57 E-value=1.7e+02 Score=31.59 Aligned_cols=12 Identities=0% Similarity=0.368 Sum_probs=8.9
Q ss_pred EEEEEEEcccch
Q 001237 77 VKIVYVVLEAQY 88 (1117)
Q Consensus 77 ~~~v~v~~~~~~ 88 (1117)
|||++|.+.+.-
T Consensus 1 mkIl~I~GSpr~ 12 (191)
T PRK10569 1 MRVITLAGSPRF 12 (191)
T ss_pred CEEEEEEcCCCC
Confidence 688888886643
No 78
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=22.49 E-value=2.5e+02 Score=27.75 Aligned_cols=85 Identities=21% Similarity=0.351 Sum_probs=48.2
Q ss_pred eEEEEeeccccccCCChHH------HHHHHHHHHcCCcEEEEEcCCCC-Cc--hhhhhhhc--------c-cc-------
Q 001237 321 VIGLILQRSHIVTGDDSHY------VAVIMELEARGAKVIPIFAGGLD-FA--GPVERFFV--------D-PV------- 375 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~------dalI~aLE~~Gl~vipvf~~gl~-~~--~~v~~~f~--------~-~~------- 375 (1117)
+|+|||-... .+|- ..++++|.+.+.+|+|||...-. .. ......+. . ..
T Consensus 2 ~v~vlfGG~S-----~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (117)
T PF01820_consen 2 RVAVLFGGRS-----SEHEVSLRSARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISASL 76 (117)
T ss_dssp EEEEEEETSS-----TTHHHHHHHHHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEEE
T ss_pred eEEEEeccCc-----hhHHHHHHHHHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhccccccccccccc
Confidence 5888886532 2333 45889999999999999985321 00 00000000 0 00
Q ss_pred ----CCCcceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEE
Q 001237 376 ----MKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYI 416 (1117)
Q Consensus 376 ----~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl 416 (1117)
.....+|++.+ +.-|+.+.|. .-+.+|+-+|+||.
T Consensus 77 ~~~~~~~~~~DvvFp-----~lHG~~GEDG-~iQglle~~~iPYv 115 (117)
T PF01820_consen 77 IEKNEQKLEVDVVFP-----VLHGPNGEDG-TIQGLLELLGIPYV 115 (117)
T ss_dssp TTESTTCTTCSEEEE-----ECCSTTTSSS-HHHHHHHHTT-EBS
T ss_pred cccccccccCCEEEE-----eccCCCCccc-HHHHHHHHcCCCCc
Confidence 01345666654 4455555554 35579999999985
No 79
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=22.44 E-value=69 Score=39.68 Aligned_cols=25 Identities=52% Similarity=1.047 Sum_probs=0.0
Q ss_pred CCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCCeeeEE
Q 001237 656 KADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYY 698 (1117)
Q Consensus 656 ~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniYpY 698 (1117)
+||+|||+| .+|.+ -...+|.+|.|
T Consensus 106 ~aD~iVHyG----------------hsCLs--p~~~lPviYVf 130 (496)
T TIGR00272 106 HAEAVVHFG----------------DACLS--AIQNLPVVYVF 130 (496)
T ss_pred CCCEEEEeC----------------CCCCC--CCCCCCEEEEe
No 80
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.12 E-value=70 Score=36.04 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=28.5
Q ss_pred eEEEE-eecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001237 498 KLAIT-VFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1117)
Q Consensus 498 KVAIi-l~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 540 (1117)
||||| -+.|||..|.+++ .+.++.+.|++.||+|.
T Consensus 1 ~i~~i~~~~~~~~~gG~~~--------~~~~la~~L~~~g~~v~ 36 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFET--------FVEELAPRLVARGHEVT 36 (363)
T ss_pred CeEEEecCcCCcccCcHHH--------HHHHHHHHHHhcCCCEE
Confidence 79998 4558887666653 88899999999999994
No 81
>PF13329 ATG2_CAD: Autophagy-related protein 2 CAD motif
Probab=22.05 E-value=1.2e+02 Score=31.70 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=48.2
Q ss_pred HHHhCCeeeeCCCCCcceeEEecccccCCCcceEEEecCchh----hhhHHHHHHHHHhccCCCCCCc
Q 001237 1047 LWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVF----RDLFINQVLFTVAISCPTELPI 1110 (1117)
Q Consensus 1047 L~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiF----RD~Fp~~i~Lla~~~~~~~~~~ 1110 (1117)
+.=+|--+|-.-+.--..+.+....|.|.||+||-++..-+. -|.|-.+|+|+-+|.-|..-+-
T Consensus 84 ~~~~Gyv~i~~i~s~~v~v~~~~~~~~g~~~vdv~v~~d~l~LetCADS~qTLi~Ll~~LkpP~~~p~ 151 (157)
T PF13329_consen 84 LLKRGYVSIGSISSAHVSVKVNENDEDGEPRVDVEVNDDLLVLETCADSTQTLIQLLNDLKPPTTPPD 151 (157)
T ss_pred hhhCCcEEEEEEccEEEEEEEecCcccCceEEEEEEEcCEEEEEEccchHHHHHHHHHHcCCCCCCCh
Confidence 444666666543333346788899999999999988876543 4999999999999999985544
No 82
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=22.02 E-value=59 Score=37.57 Aligned_cols=51 Identities=27% Similarity=0.516 Sum_probs=22.9
Q ss_pred EEEEeCCCCC-CCCCcccccCCCCCCCCchhHHHHHHHhhhcCCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCC
Q 001237 615 VFIGVQPTFG-YEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIP 693 (1117)
Q Consensus 615 VfIgvQP~RG-~~~Dp~~l~Hd~~lpP~HqYlAfY~WL~~~F~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlP 693 (1117)
+||.=.|..| |--|... -+.-+||+|||+|- +|.|. .--.+|
T Consensus 23 v~IlaDttYGaCcvD~~~--------------------a~h~~aD~IVH~Gh----------------scl~~-~~~~ip 65 (307)
T PF01866_consen 23 VYILADTTYGACCVDEVA--------------------AEHVGADLIVHYGH----------------SCLSP-TKPRIP 65 (307)
T ss_dssp EEEE-S-B--TTS--HHH--------------------HHHTT-SEEEEEE--------------------S-----SS-
T ss_pred EEEEeCCcccCCCcCHHH--------------------HhhcCCcEEEECCC----------------CCCCc-ccccCc
Confidence 7777778777 4444321 13458999999983 57766 223699
Q ss_pred eeeEEecCC
Q 001237 694 NVYYYAANN 702 (1117)
Q Consensus 694 niYpYivnn 702 (1117)
.+|.+.--+
T Consensus 66 viyV~~~~~ 74 (307)
T PF01866_consen 66 VIYVFVEIN 74 (307)
T ss_dssp EEEEE--B-
T ss_pred eEEEeccCC
Confidence 999995544
No 83
>PF07057 TraI: DNA helicase TraI; InterPro: IPR009767 This entry represents a conserved region approximately 130 residues long within the bacterial DNA helicase TraI. TraI is a bifunctional protein that catalyses the unwinding of duplex DNA as well as acts as a sequence-specific DNA trans-esterase, providing the site- and strand-specific nick required to initiate DNA transfer [].; GO: 0003677 DNA binding, 0003678 DNA helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0000746 conjugation; PDB: 3FLD_B.
Probab=22.01 E-value=53 Score=33.25 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=13.6
Q ss_pred eeeCCCCCcceeEEeccc
Q 001237 1054 PVSDTFGRVNRVEPVSLE 1071 (1117)
Q Consensus 1054 Pvwd~~GrV~g~ElIPL~ 1071 (1117)
|+||.+||..|+-+.||.
T Consensus 97 Pv~D~NGK~AGv~L~~L~ 114 (126)
T PF07057_consen 97 PVYDRNGKQAGVWLTPLR 114 (126)
T ss_dssp EEE-TTS-EEEEEEEE-E
T ss_pred eeecCCCceeeeEEeeee
Confidence 999999999999998874
No 84
>PRK10307 putative glycosyl transferase; Provisional
Probab=21.62 E-value=88 Score=36.84 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=29.0
Q ss_pred ceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001237 497 KKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1117)
Q Consensus 497 KKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 540 (1117)
.||+||-++|+|.-+.+|. .+.++.++|.+.||+|.
T Consensus 1 mkIlii~~~~~P~~~g~~~--------~~~~l~~~L~~~G~~V~ 36 (412)
T PRK10307 1 MKILVYGINYAPELTGIGK--------YTGEMAEWLAARGHEVR 36 (412)
T ss_pred CeEEEEecCCCCCccchhh--------hHHHHHHHHHHCCCeEE
Confidence 3899999999987554332 57899999999999994
No 85
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=20.90 E-value=2.6e+02 Score=32.96 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=56.3
Q ss_pred CCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEec-ccccccCCC
Q 001237 318 DAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISL-TGFALVGGP 396 (1117)
Q Consensus 318 ~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~-tgF~L~ggp 396 (1117)
.+++|-|+-.....- +-...|-+-||+-|++|..+|..+-+ ++++-. .+.+...++++. .+.
T Consensus 151 ~~~~vNlig~~~~~~----~d~~el~~ll~~~G~~v~~~~~~~~s----~~~i~~---~~~A~~nlv~~~~~g~------ 213 (399)
T cd00316 151 EPGSVNLIGGYNLGG----GDLRELKRLLEEMGIRVNALFDGGTT----VEELRE---LGNAKLNLVLCRESGL------ 213 (399)
T ss_pred CCCcEEEECCCCCch----hhHHHHHHHHHHcCCcEEEEcCCCCC----HHHHHh---hccCcEEEEecHhHHH------
Confidence 356788876643221 35677888899999999999976533 223221 123334444443 211
Q ss_pred CCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001237 397 ARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1117)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1117)
..+..+-++.++|++...|.-.....+|.+.
T Consensus 214 -----~~a~~l~~~~g~p~~~~~p~G~~~t~~~l~~ 244 (399)
T cd00316 214 -----YLARYLEEKYGIPYILINPIGLEATDAFLRK 244 (399)
T ss_pred -----HHHHHHHHHhCCCeEEeCCcCHHHHHHHHHH
Confidence 1233344567999998877766677888754
No 86
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=20.63 E-value=73 Score=29.37 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.0
Q ss_pred cCChhHHHHHHHhCCeeeeCCC
Q 001237 1038 TYGESLAQVLWMIGVRPVSDTF 1059 (1117)
Q Consensus 1038 t~Ge~iAQiL~LlGvrPvwd~~ 1059 (1117)
-+||-+|+++..+|.++|+-++
T Consensus 20 ~DGe~ia~~~~~~G~~~iRGSs 41 (74)
T PF04028_consen 20 RDGELIARVLERFGFRTIRGSS 41 (74)
T ss_pred cCHHHHHHHHHHcCCCeEEeCC
Confidence 5899999999999999999764
No 87
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=20.60 E-value=7.7e+02 Score=25.40 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=20.2
Q ss_pred ceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEe
Q 001237 380 MVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVAL 419 (1117)
Q Consensus 380 ~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai 419 (1117)
.||+|||+..= ....+...+...-...--+.|||++..+
T Consensus 75 ~i~lVInt~dp-~~~~~~~~D~~~IRR~Av~~~IP~~T~l 113 (142)
T PRK05234 75 KIDMLIFFRDP-LTAQPHDPDVKALLRLADVWNIPVATNR 113 (142)
T ss_pred ceeEEEEecCC-CCCCcccchHHHHHHHHHHcCCCEEcCH
Confidence 59999997510 1111111222222233346899999655
No 88
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=20.24 E-value=81 Score=37.03 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCcEEEEecCCCcCCCCCCCccCCCCCCcchhhcCCCCeeeEE
Q 001237 656 KADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYY 698 (1117)
Q Consensus 656 ~ADAvvH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniYpY 698 (1117)
+||+|||+| .+|.+.... .+|.+|.|
T Consensus 71 ~aD~iVHyG----------------Hscl~~~~~-~~pv~yVf 96 (332)
T TIGR00322 71 DVDLIVHYA----------------HTPLVPDDV-EIKVLYVP 96 (332)
T ss_pred CCCEEEEcC----------------CCCCCcccC-CCCEEEEE
No 89
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=20.15 E-value=3.5e+02 Score=31.86 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=63.8
Q ss_pred CeEEEEeeccccccCCChHHHHHHHHHHH-cCCcEEEEEcCCCCCc---------hhhhhhhccccCCCcceeEEEeccc
Q 001237 320 PVIGLILQRSHIVTGDDSHYVAVIMELEA-RGAKVIPIFAGGLDFA---------GPVERFFVDPVMKKPMVNSAISLTG 389 (1117)
Q Consensus 320 p~Vgil~yrs~~~~g~~~~~dalI~aLE~-~Gl~vipvf~~gl~~~---------~~v~~~f~~~~~~~~~vDaiIn~tg 389 (1117)
..|+|+.--..-+-|+ .++++++++++ -|..++|+.+.|+..+ ..+.+++.........-.--||+.|
T Consensus 82 ~~i~v~~tc~~~liGd--Di~~v~~~~~~~~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig 159 (399)
T cd00316 82 KVIFVYTTCTTELIGD--DIEAVAKEASKEIGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIG 159 (399)
T ss_pred CEEEEecCchhhhhcc--CHHHHHHHHHHhhCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEEC
Confidence 4566665444333332 47889998884 5899999999887632 1233344321000111112355554
Q ss_pred ccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 390 FALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 390 F~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
+.-..+ .+..+-.++|+++++-|....+ ...+.+++++..
T Consensus 160 ~~~~~~---~d~~el~~ll~~~G~~v~~~~~-~~~s~~~i~~~~ 199 (399)
T cd00316 160 GYNLGG---GDLRELKRLLEEMGIRVNALFD-GGTTVEELRELG 199 (399)
T ss_pred CCCCch---hhHHHHHHHHHHcCCcEEEEcC-CCCCHHHHHhhc
Confidence 432111 3556677899999999987765 358999999753
No 90
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=20.15 E-value=1.4e+02 Score=33.52 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=44.9
Q ss_pred eecCCCceeecCc-cccccccCCCCCCCcEEEEEEEcccchhHH-HHHHHHHHHhccCCccEEEEEehhhhcCChhhHHH
Q 001237 49 AVVGNGLFTQTSP-EVRRIVPENRDNLPTVKIVYVVLEAQYQSA-LSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKT 126 (1117)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1117)
+..|||.+...++ -.|+++... .+..+ ||+||..-+..... ..+....+.+- .--.++++.... ++.+.-++
T Consensus 2 ~~iGG~~~~~~~~~i~~~~~~la-g~~~~-rI~~iptAS~~~~~~~~~~~~~~~~l-G~~~v~~l~i~~---r~~a~~~~ 75 (250)
T TIGR02069 2 VIIGGAEDKVGDREILREFVSRA-GGEDA-IIVIITSASEEPREVGERYITIFSRL-GVKEVKILDVRE---REDASDEN 75 (250)
T ss_pred eEEeCccccCChHHHHHHHHHHh-CCCCc-eEEEEeCCCCChHHHHHHHHHHHHHc-CCceeEEEecCC---hHHccCHH
Confidence 3457777774433 667777665 33333 89999765543333 22333333332 211233332211 11122345
Q ss_pred HHHHhhcCCEEEEe
Q 001237 127 FCKDLENANIFIGS 140 (1117)
Q Consensus 127 ~~~~i~~adi~~~s 140 (1117)
+.+.|.+||+|+.+
T Consensus 76 ~~~~l~~ad~I~~~ 89 (250)
T TIGR02069 76 AIALLSNATGIFFT 89 (250)
T ss_pred HHHHHhhCCEEEEe
Confidence 66789999999985
No 91
>PF14044 NETI: NETI protein
Probab=20.14 E-value=63 Score=28.36 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHCCCCC
Q 001237 523 SSIFSVLKDLQRDGYNV 539 (1117)
Q Consensus 523 ~Sl~~iL~~Lk~~GY~v 539 (1117)
+|+..-|.+|+++||..
T Consensus 8 ETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 8 ETISDCLARMKKEGYMP 24 (57)
T ss_pred CcHHHHHHHHHHcCCCc
Confidence 57889999999999975
No 92
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.10 E-value=2.4e+02 Score=35.09 Aligned_cols=109 Identities=16% Similarity=0.097 Sum_probs=62.8
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCch------h----hhhhhccccC-CCcceeEEEeccc
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAG------P----VERFFVDPVM-KKPMVNSAISLTG 389 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~------~----v~~~f~~~~~-~~~~vDaiIn~tg 389 (1117)
.|+|+.--..-+-| ..+.+++++++.+|+.++++-+.|+.... + ++.|...... +.....--||..|
T Consensus 88 ~I~V~sTC~selIG--dDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG 165 (511)
T TIGR01278 88 LIVVTPSCTSSLLQ--EDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLG 165 (511)
T ss_pred EEEEeCCChHHHhc--cCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEe
Confidence 55655443221222 24578899998889999999888865321 1 2222211000 0001123466666
Q ss_pred ccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001237 390 FALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1117)
Q Consensus 390 F~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1117)
+...+.-...|..+-..+|+.+|+.|...+|. ..+.+++++.
T Consensus 166 ~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~-g~s~~dl~~l 207 (511)
T TIGR01278 166 PASLGFHHRHDLIELRRLLKTLGIEVNVVAPW-GASIADLARL 207 (511)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC-CCCHHHHHhc
Confidence 54322212335556678999999999888774 5788998864
No 93
>TIGR00628 ung uracil-DNA glycosylase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.08 E-value=1.1e+02 Score=33.91 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=41.7
Q ss_pred HHcccCCCCCceEEEEeec-CCCCCCCcccc----CCCChHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHH
Q 001237 487 GELKRKTKAEKKLAITVFS-FPPDKGNIGTA----AYLNVFSSIFSVLKDLQRD--GYNVEGLPETSEALIEE 552 (1117)
Q Consensus 487 ~~LR~kpnaeKKVAIil~n-yPp~~g~iGtA----a~LDv~~Sl~~iL~~Lk~~--GY~v~~~P~~~~~L~~~ 552 (1117)
..++.+|..+-||.|+--+ ||.-...-|-| .+--+|.||.||.++|+++ |+. .|.+++ |...
T Consensus 43 ~af~~~p~~~vKVVIlGQDPYh~~gqA~GLaFSv~~~~~~PpSL~NI~kEl~~d~~~~~---~p~~g~-L~~W 111 (212)
T TIGR00628 43 AWTRFCPPEDVKVVILGQDPYHGPGQAHGLAFSVKPGVPIPPSLKNIFKELEADYPDFP---PPKHGC-LEAW 111 (212)
T ss_pred HHHhcCChhheEEEEecCCCCCCCCCcceeeeECCCCCCCCchHHHHHHHHHHHcCCCC---CCCCCC-hHHH
Confidence 3456789999999999877 66433333433 2345689999999999987 343 365553 5443
Done!