Query 001237
Match_columns 1117
No_of_seqs 276 out of 821
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qk7_A Transcriptional regulat 44.4 68 0.0023 33.9 9.3 86 319-418 6-94 (294)
2 3pdi_B Nitrogenase MOFE cofact 42.4 73 0.0025 37.2 9.7 92 321-418 95-202 (458)
3 4hs4_A Chromate reductase; tri 35.0 87 0.003 32.1 7.9 26 76-101 6-31 (199)
4 2xw6_A MGS, methylglyoxal synt 34.2 37 0.0013 33.3 4.6 65 349-419 48-112 (134)
5 3k9c_A Transcriptional regulat 32.7 93 0.0032 32.8 7.9 83 318-418 11-94 (289)
6 2q62_A ARSH; alpha/beta, flavo 31.6 61 0.0021 34.6 6.2 62 75-139 33-104 (247)
7 4h1h_A LMO1638 protein; MCCF-l 29.1 81 0.0028 35.1 6.9 63 319-388 12-86 (327)
8 2l2q_A PTS system, cellobiose- 28.6 96 0.0033 28.7 6.3 72 73-155 1-72 (109)
9 2fzv_A Putative arsenical resi 28.6 75 0.0026 34.8 6.3 63 74-139 56-129 (279)
10 3svl_A Protein YIEF; E. coli C 25.0 1.3E+02 0.0045 30.5 7.1 27 75-101 3-29 (193)
11 3m9w_A D-xylose-binding peripl 23.2 1.9E+02 0.0065 30.5 8.3 85 319-418 2-89 (313)
12 1vmd_A MGS, methylglyoxal synt 22.9 78 0.0027 32.6 4.7 39 380-419 98-136 (178)
13 4f2d_A L-arabinose isomerase; 22.7 60 0.0021 38.5 4.5 143 337-506 29-185 (500)
14 2vzf_A NADH-dependent FMN redu 22.6 1.3E+02 0.0044 30.4 6.5 59 77-139 3-75 (197)
15 3u7r_A NADPH-dependent FMN red 22.3 1.8E+02 0.0062 29.7 7.5 58 78-139 4-73 (190)
16 3g85_A Transcriptional regulat 22.3 1.4E+02 0.0049 31.0 7.0 89 317-418 9-97 (289)
17 3lcm_A SMU.1420, putative oxid 21.9 1.3E+02 0.0045 30.5 6.4 63 77-139 1-79 (196)
18 1t0i_A YLR011WP; FMN binding p 21.3 2.1E+02 0.0074 28.2 7.8 35 77-111 1-43 (191)
19 3t7a_A Inositol pyrophosphate 21.2 40 0.0014 37.7 2.4 66 316-392 4-71 (330)
20 4e5v_A Putative THUA-like prot 20.9 1.5E+02 0.005 32.4 6.8 81 73-157 1-85 (281)
21 3fro_A GLGA glycogen synthase; 20.9 49 0.0017 36.6 3.1 36 497-540 3-39 (439)
22 1rtt_A Conserved hypothetical 20.7 1.7E+02 0.0058 29.2 6.9 35 76-110 6-41 (193)
23 3hcw_A Maltose operon transcri 20.7 1.5E+02 0.005 31.3 6.7 86 318-418 6-97 (295)
24 3c48_A Predicted glycosyltrans 20.5 46 0.0016 37.2 2.8 40 496-540 20-63 (438)
25 3u7q_A Nitrogenase molybdenum- 20.4 2.4E+02 0.0081 33.2 8.9 105 321-433 147-266 (492)
26 3k4h_A Putative transcriptiona 20.3 1.3E+02 0.0043 31.4 6.1 87 317-418 6-98 (292)
No 1
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.42 E-value=68 Score=33.91 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCeEEEEeeccccccCC---ChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCC
Q 001237 319 APVIGLILQRSHIVTGD---DSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGG 395 (1117)
Q Consensus 319 ~p~Vgil~yrs~~~~g~---~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~gg 395 (1117)
..+||+++........| ...+.++-++++++|..++-......+....+.+.+.. ..||+||-.....
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-----~~vdGiIi~~~~~---- 76 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET-----RRVDALIVAHTQP---- 76 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH-----TCCSEEEECSCCS----
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc-----CCCCEEEEeCCCC----
Confidence 46899999732100111 24556777888899999986665432111222333332 2589998754211
Q ss_pred CCCCCchhHHHHhhhCCCcEEeE
Q 001237 396 PARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 396 pa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
.....+.+++.++||+..
T Consensus 77 -----~~~~~~~l~~~~iPvV~~ 94 (294)
T 3qk7_A 77 -----EDFRLQYLQKQNFPFLAL 94 (294)
T ss_dssp -----SCHHHHHHHHTTCCEEEE
T ss_pred -----ChHHHHHHHhCCCCEEEE
Confidence 124567788999999844
No 2
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=42.42 E-value=73 Score=37.22 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=53.5
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc-----CCcEEEEEcCCCCCc---------hhhhhhhccc-cCCCcceeEEE
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA---------GPVERFFVDP-VMKKPMVNSAI 385 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~-----Gl~vipvf~~gl~~~---------~~v~~~f~~~-~~~~~~vDaiI 385 (1117)
.|+|+.--..-+-| ..+++++++++++ |+.|+||-+.|+..+ .++-++|... ........--|
T Consensus 95 ~I~V~tTC~~e~IG--dDi~~v~~~~~~~~~~~~~~pVi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~~~V 172 (458)
T 3pdi_B 95 VIGLLTTGLSETQG--CDLHTALHEFRTQYEEYKDVPIVPVNTPDFSGCFESGFAAAVKAIVETLVPERRDQVGKRPRQV 172 (458)
T ss_dssp EEEEEECHHHHTTC--TTHHHHHHHTTTSCCSCSCSCEEEECCCTTSSCHHHHHHHHHHHHHHHSSCSSSCTTCCCSSEE
T ss_pred EEEEECCcHHHHhc--CCHHHHHHHHHHhccccCCCeEEEeeCCCcCCchhHHHHHHHHHHHHHhhccccCcCCCCCCeE
Confidence 55555443333333 3578899999987 899999988887632 1223444431 00011112245
Q ss_pred ecc-cccccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001237 386 SLT-GFALVGGPARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 386 n~t-gF~L~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
|.. |+.+.. .|..+-..+|+++++.|...
T Consensus 173 Nii~G~~~~~----~D~~eik~lL~~~Gi~v~~~ 202 (458)
T 3pdi_B 173 NVLCSANLTP----GDLEYIAESIESFGLRPLLI 202 (458)
T ss_dssp EEEECTTCCH----HHHHHHHHHHHTTTCEEEEE
T ss_pred EEEeCCCCCh----HHHHHHHHHHHHcCCEEEEe
Confidence 654 664321 24455668999999998853
No 3
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=35.03 E-value=87 Score=32.12 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=14.6
Q ss_pred cEEEEEEEcccchhHHHHHHHHHHHh
Q 001237 76 TVKIVYVVLEAQYQSALSAAVQALNQ 101 (1117)
Q Consensus 76 ~~~~v~v~~~~~~~~~~~~a~~~l~~ 101 (1117)
+|||++|.+.+.-.+.-.+.++.+.+
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~ 31 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPE 31 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHH
Confidence 58999998875533333333333333
No 4
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=34.20 E-value=37 Score=33.31 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=36.7
Q ss_pred cCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEe
Q 001237 349 RGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVAL 419 (1117)
Q Consensus 349 ~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai 419 (1117)
.|+.|-.|....++.++-+-+...+ | .||.|||+.. +|...|+..|...-...--..||||+..+
T Consensus 48 ~Gl~v~~v~k~~~eG~p~I~d~I~~---g--eIdlVInt~~-pl~~~~h~~D~~~IrR~A~~~~IP~~T~l 112 (134)
T 2xw6_A 48 TGLTVEKLLSGPLGGDQQMGARVAE---G--RILAVIFFRD-PLTAQPHEPDVQALLRVCDVHGVPLATNP 112 (134)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHT---T--CEEEEEEECC-TTTCCTTSCCSHHHHHHHHHHTCCEECSH
T ss_pred hCceEEEEEecCCCCcchHHHHHHC---C--CccEEEEccC-cccCCCccchHHHHHHHHHHcCCCeEcCH
Confidence 5666665443222333334444432 3 4999999873 33344434554444444457899999655
No 5
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.74 E-value=93 Score=32.77 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=45.4
Q ss_pred CCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCC-chhhhhhhccccCCCcceeEEEecccccccCCC
Q 001237 318 DAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDF-AGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1117)
Q Consensus 318 ~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~-~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggp 396 (1117)
...+||+++ . .-..--...+.++-++++++|..++-....+-.. ...++.+ . ...||+||-....
T Consensus 11 ~~~~Igvi~-~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~-----~~~vdgiIi~~~~------ 76 (289)
T 3k9c_A 11 SSRLLGVVF-E-LQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-M-----RERCEAAILLGTR------ 76 (289)
T ss_dssp --CEEEEEE-E-TTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-T-----TTTEEEEEEETCC------
T ss_pred CCCEEEEEE-e-cCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-H-----hCCCCEEEEECCC------
Confidence 357999998 2 1101112445667778888999998655433211 1112222 2 2359999875321
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001237 397 ARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1117)
......+.+++ ++||+..
T Consensus 77 ---~~~~~~~~~~~-~iPvV~i 94 (289)
T 3k9c_A 77 ---FDTDELGALAD-RVPALVV 94 (289)
T ss_dssp ---CCHHHHHHHHT-TSCEEEE
T ss_pred ---CCHHHHHHHHc-CCCEEEE
Confidence 11244556667 9999844
No 6
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=31.63 E-value=61 Score=34.65 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=34.4
Q ss_pred CcEEEEEEEcccc---hhHHHHHHHHHHHhccCCccEEEEEehhhhcC-------ChhhHHHHHHHhhcCCEEEE
Q 001237 75 PTVKIVYVVLEAQ---YQSALSAAVQALNQQVNYASYEVVGYLVEELR-------DVDTYKTFCKDLENANIFIG 139 (1117)
Q Consensus 75 ~~~~~v~v~~~~~---~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~adi~~~ 139 (1117)
+.|||++|...+. +...+.+++....++ ++.++++. ....+. .++.+.++.+.|..||.||.
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~-~g~eve~i--dL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~ 104 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEF-FGAEVKVF--DPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHH-TTCEEEEC--CCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhh-CCCEEEEE--EhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence 4578999988763 455555544433232 34445543 333221 23446777777777776654
No 7
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.10 E-value=81 Score=35.12 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCC-------CCc-----hhhhhhhccccCCCcceeEEEe
Q 001237 319 APVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGL-------DFA-----GPVERFFVDPVMKKPMVNSAIS 386 (1117)
Q Consensus 319 ~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl-------~~~-----~~v~~~f~~~~~~~~~vDaiIn 386 (1117)
.-+|||+.--+.+-.-+...++.-++.||+.|++|+ +...+ ..+ ..+.++|.| +.||+|+.
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~--~~~~~~~~~~~~agtd~~Ra~dL~~a~~D-----p~i~aI~~ 84 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVT--FGEHVAEMDCMMSSSIRSRVADIHEAFND-----SSVKAILT 84 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEE--ECTTTTCCCTTSSCCHHHHHHHHHHHHHC-----TTEEEEEE
T ss_pred CCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEE--ECcchhhccCcccCCHHHHHHHHHHHhhC-----CCCCEEEE
Confidence 359999988666533344668889999999999987 33221 111 124456665 46999998
Q ss_pred cc
Q 001237 387 LT 388 (1117)
Q Consensus 387 ~t 388 (1117)
.-
T Consensus 85 ~r 86 (327)
T 4h1h_A 85 VI 86 (327)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 8
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=28.61 E-value=96 Score=28.73 Aligned_cols=72 Identities=7% Similarity=0.031 Sum_probs=38.6
Q ss_pred CCCcEEEEEEEcccchhHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcCCEEEEeccccHHHHHHHH
Q 001237 73 NLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELALKIK 152 (1117)
Q Consensus 73 ~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~adi~~~sllf~~~~~~~~~ 152 (1117)
|++.||+++++..+--.|.+....+..-.+. ++++++.++...++. ..+.++|+||.+--..+. .+.+.
T Consensus 1 ~~~~mkIlvvC~~G~~TSll~~kl~~~~~~~-gi~~~i~~~~~~~~~---------~~~~~~D~Ii~t~~l~~~-~~~~~ 69 (109)
T 2l2q_A 1 GPGSMNILLVCGAGMSTSMLVQRIEKYAKSK-NINATIEAIAETRLS---------EVVDRFDVVLLAPQSRFN-KKRLE 69 (109)
T ss_dssp CCCCEEEEEESSSSCSSCHHHHHHHHHHHHH-TCSEEEEEECSTTHH---------HHTTTCSEEEECSCCSSH-HHHHH
T ss_pred CCCceEEEEECCChHhHHHHHHHHHHHHHHC-CCCeEEEEecHHHHH---------hhcCCCCEEEECCccHHH-HHHHH
Confidence 3455997777665554444444443333332 245566654444322 236789999998665433 33344
Q ss_pred HHH
Q 001237 153 AAV 155 (1117)
Q Consensus 153 ~~v 155 (1117)
..+
T Consensus 70 ~~~ 72 (109)
T 2l2q_A 70 EIT 72 (109)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 9
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.57 E-value=75 Score=34.79 Aligned_cols=63 Identities=16% Similarity=0.034 Sum_probs=35.1
Q ss_pred CCcEEEEEEEccc---chhHHHHHHHHHHHhccCCccEEEEEehhhhc--------CChhhHHHHHHHhhcCCEEEE
Q 001237 74 LPTVKIVYVVLEA---QYQSALSAAVQALNQQVNYASYEVVGYLVEEL--------RDVDTYKTFCKDLENANIFIG 139 (1117)
Q Consensus 74 ~~~~~~v~v~~~~---~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~adi~~~ 139 (1117)
...|||++|.+.. ++...+.+++....++ .+.++++. ....+ ..++.+.++.+.|..||.||.
T Consensus 56 ~~~mKILiI~GS~R~~S~T~~La~~~~~~l~~-~G~eveii--dL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQF-FGAETRIF--DPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHH-TTCEEEEB--CCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHhh-CCCEEEEE--ehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 3468999998876 4555555544433333 34455543 33322 123446667777777776554
No 10
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=24.98 E-value=1.3e+02 Score=30.53 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=16.4
Q ss_pred CcEEEEEEEcccchhHHHHHHHHHHHh
Q 001237 75 PTVKIVYVVLEAQYQSALSAAVQALNQ 101 (1117)
Q Consensus 75 ~~~~~v~v~~~~~~~~~~~~a~~~l~~ 101 (1117)
.+|||++|.+.+.-.+...+.++.+.+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~ 29 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPK 29 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGG
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHH
Confidence 358999999887655544444444433
No 11
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.16 E-value=1.9e+02 Score=30.54 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=49.6
Q ss_pred CCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCc---hhhhhhhccccCCCcceeEEEecccccccCC
Q 001237 319 APVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGG 395 (1117)
Q Consensus 319 ~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~---~~v~~~f~~~~~~~~~vDaiIn~tgF~L~gg 395 (1117)
+.+||+++.... ..--...+.++-+++++.|++++-... ..+.. ..++.+.. ..+|+||-....
T Consensus 2 ~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~------~~vdgiIi~~~~----- 68 (313)
T 3m9w_A 2 EVKIGMAIDDLR-LERWQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMIN------RGVDVLVIIPYN----- 68 (313)
T ss_dssp -CEEEEEESCCS-SSTTHHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHH------TTCSEEEEECSS-----
T ss_pred CcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHH------cCCCEEEEeCCC-----
Confidence 368999986421 111246778889999999999885433 22211 11222221 258998864321
Q ss_pred CCCCCchhHHHHhhhCCCcEEeE
Q 001237 396 PARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 396 pa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
........+.+.+.++||+..
T Consensus 69 --~~~~~~~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 69 --GQVLSNVVKEAKQEGIKVLAY 89 (313)
T ss_dssp --TTSCHHHHHHHHTTTCEEEEE
T ss_pred --hhhhHHHHHHHHHCCCeEEEE
Confidence 111234566788899999854
No 12
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=22.94 E-value=78 Score=32.56 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=25.0
Q ss_pred ceeEEEecccccccCCCCCCCchhHHHHhhhCCCcEEeEe
Q 001237 380 MVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVAL 419 (1117)
Q Consensus 380 ~vDaiIn~tgF~L~ggpa~~~~~~~~~~L~~LnVPvl~ai 419 (1117)
.||+|||+.. +|...|...|...-...--..||||+..+
T Consensus 98 eIdlVInt~d-Pl~~~~h~~D~~~IRR~A~~~~IP~~Tnl 136 (178)
T 1vmd_A 98 KIDVLIFFWD-PLEPQAHDVDVKALIRIATVYNIPVAITR 136 (178)
T ss_dssp SCCEEEEECC-SSSCCTTSCCHHHHHHHHHHTTCCEESSH
T ss_pred CccEEEEccC-ccCCCcccccHHHHHHHHHHcCCCEEeCH
Confidence 4999999863 33444434454444445568899999654
No 13
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=22.68 E-value=60 Score=38.48 Aligned_cols=143 Identities=12% Similarity=0.055 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHcCCcEEEEEcCCC-CCchhhhhhhccccCCCcceeEEEec-ccccccCCCCCCCchhHHHHhhhCCCc
Q 001237 337 SHYVAVIMELEARGAKVIPIFAGGL-DFAGPVERFFVDPVMKKPMVNSAISL-TGFALVGGPARQDHPRAIEALRKLDVP 414 (1117)
Q Consensus 337 ~~~dalI~aLE~~Gl~vipvf~~gl-~~~~~v~~~f~~~~~~~~~vDaiIn~-tgF~L~ggpa~~~~~~~~~~L~~LnVP 414 (1117)
++-+++++.|.+.|.-++.|...++ ...+.++++... .+....||.||.. .-|+ ++.-.+..++.+++|
T Consensus 29 ~~~~~~~~~l~~~~~l~~~vv~~g~v~t~~~~~~~~~~-~n~~~~vdgvi~~~~TFs--------~a~~~i~~l~~l~~P 99 (500)
T 4f2d_A 29 QHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRD-ANYDDRCAGLVVWLHTFS--------PAKMWINGLTMLNKP 99 (500)
T ss_dssp HHHHHHHHHHHHHTCCSSEEEECCCBCSHHHHHHHHHH-HHHCTTEEEEEEECCSCC--------CTHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhccccCCCeEEEecCcCCCHHHHHHHHHH-hccccCCcEEEEeCCcCc--------cHHHHHHHHHhcCCC
Confidence 4456799999998865655555554 444445444432 1123468988874 3342 234456789999999
Q ss_pred EEeEecCCCCCH------HHHhcCCCCCChhhhhhheeccccCcce------eeEEEEeecCCCCccccchHHHHHHHHH
Q 001237 415 YIVALPLVFQTT------EEWLNSTLGLHPIQVALQVALPELDGGL------EPIVFAGRDPRTGKAHALHKRVEQLCTR 482 (1117)
Q Consensus 415 vl~ai~l~~qt~------eeW~~s~~GL~p~~~~~~ValPElDG~I------~piv~~~~~~~~~~~~pipeRi~~la~r 482 (1117)
|+...+-...+. -+|.+--+.. .-.+|+-... ..++.|-.+ -.-..++|+..++-
T Consensus 100 vL~~~~q~~~~ip~~~id~d~m~lnqsa--------cG~~e~~~~l~r~gi~~~~v~G~~~-----d~~~~~~i~~w~ra 166 (500)
T 4f2d_A 100 LLQFHTQFNAALPWDSIDMDFMNLNQTA--------HGGREFGFIGARMRQQHAVVTGHWQ-----DKQAHERIGSWMRQ 166 (500)
T ss_dssp EEEEECCSCSSCCTTTCCHHHHHHCCHH--------HHHHHHHHHHHHTTCCEEEEESCTT-----CHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCccccchHHHhccccc--------cchHHHHHHHHHcCCCeEEEECCCC-----CHHHHHHHHHHHHH
Confidence 998764221111 1343222111 1223443322 233333221 12367889999999
Q ss_pred HHHHHHcccCCCCCceEEEEeecC
Q 001237 483 AIRWGELKRKTKAEKKLAITVFSF 506 (1117)
Q Consensus 483 a~~W~~LR~kpnaeKKVAIil~ny 506 (1117)
+.-|..||+ -||+.|=.|+
T Consensus 167 a~~~~~lr~-----~rig~iG~~m 185 (500)
T 4f2d_A 167 AVSKQDTRH-----LKVCRFGDNM 185 (500)
T ss_dssp HHHHHHHTT-----CEEEEESCCC
T ss_pred HHHHHHhcC-----CeEEEECCch
Confidence 999999984 4788876533
No 14
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=22.64 E-value=1.3e+02 Score=30.37 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=31.8
Q ss_pred EEEEEEEccc---chhHHHHHHHHH--HHhccCCccEEEEEehhhhcC---------ChhhHHHHHHHhhcCCEEEE
Q 001237 77 VKIVYVVLEA---QYQSALSAAVQA--LNQQVNYASYEVVGYLVEELR---------DVDTYKTFCKDLENANIFIG 139 (1117)
Q Consensus 77 ~~~v~v~~~~---~~~~~~~~a~~~--l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~adi~~~ 139 (1117)
||+++|.... ++...+.+++.. +.+. +.++++. ...... .++..+++.+.+..||.||.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~--g~~v~~~--dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~ 75 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARS--DSQGRHI--HVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIV 75 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHS--SEEEEEE--EGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHC--CCeEEEE--EccccCchhhcccccCcHHHHHHHHHHHHCCEEEE
Confidence 5888888774 555566555543 3432 3444443 333321 12345566667777775544
No 15
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=22.34 E-value=1.8e+02 Score=29.69 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=30.5
Q ss_pred EEEEEEccc---chhHHHHHHHHHHHhccCCccEEEEEehhhhc---------CChhhHHHHHHHhhcCCEEEE
Q 001237 78 KIVYVVLEA---QYQSALSAAVQALNQQVNYASYEVVGYLVEEL---------RDVDTYKTFCKDLENANIFIG 139 (1117)
Q Consensus 78 ~~v~v~~~~---~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~adi~~~ 139 (1117)
+|++|++.. +++..+.+++..+... + +++..+...++ ..|+...++.+.|+.||.||.
T Consensus 4 ~I~vi~GS~R~~S~~~~la~~~~~~~~~--~--~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii 73 (190)
T 3u7r_A 4 TVAVMVGSLRKDSLNHKLMKVLQKLAEG--R--LEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLA 73 (190)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHTT--T--EEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhccC--C--CEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEE
Confidence 567776643 4555566665555443 3 34433333221 234456666667777775554
No 16
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=22.26 E-value=1.4e+02 Score=31.01 Aligned_cols=89 Identities=12% Similarity=-0.034 Sum_probs=46.3
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEecccccccCCC
Q 001237 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1117)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~tgF~L~ggp 396 (1117)
....+|||++....-..--...+.++-++++++|.+++-.....-. . ...+++.. .....||+||-....
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~-~-~~~~~~~~--l~~~~vdgiIi~~~~------ 78 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKT-D-CLHLEKGI--SKENSFDAAIIANIS------ 78 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECT-T-CGGGCGGG--STTTCCSEEEESSCC------
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCc-h-hHHHHHHH--HhccCCCEEEEecCC------
Confidence 3457999998731111111356777888899999998855443211 1 11122211 122369999875321
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001237 397 ARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1117)
........+.+.++||+..
T Consensus 79 ---~~~~~~~~~~~~~iPvV~~ 97 (289)
T 3g85_A 79 ---NYDLEYLNKASLTLPIILF 97 (289)
T ss_dssp ---HHHHHHHHHCCCSSCEEEE
T ss_pred ---cccHHHHHhccCCCCEEEE
Confidence 1111222234678999844
No 17
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=21.93 E-value=1.3e+02 Score=30.51 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=32.5
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhc-cCCccEEEEEehhhhc---------------CChhhHHHHHHHhhcCCEEEE
Q 001237 77 VKIVYVVLEAQYQSALSAAVQALNQQ-VNYASYEVVGYLVEEL---------------RDVDTYKTFCKDLENANIFIG 139 (1117)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~adi~~~ 139 (1117)
||+++|...+.-.+.-.+-++.+.+. .++.++++.-...... ..++..+++.+.+..||.||.
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~ 79 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNLSKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIF 79 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHSCTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHhcCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEE
Confidence 78888887765433222222333322 2445566543222211 012446777778888887665
No 18
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=21.30 E-value=2.1e+02 Score=28.23 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=19.4
Q ss_pred EEEEEEEcccc---hhHHHHHHHHH-HHhcc----CCccEEEE
Q 001237 77 VKIVYVVLEAQ---YQSALSAAVQA-LNQQV----NYASYEVV 111 (1117)
Q Consensus 77 ~~~v~v~~~~~---~~~~~~~a~~~-l~~~~----~~~~~~~~ 111 (1117)
||+++|...+. +...+.+++.. +.+.. ++.++++.
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~ 43 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVV 43 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEE
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEE
Confidence 67878877653 55555555443 43322 35556554
No 19
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=21.23 E-value=40 Score=37.73 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCCCeEEEEeeccccccCCChHHHHHHHHHHHcCCcEEEEEcCCCCCchhhhhhhccccCCCcceeEEEec--ccccc
Q 001237 316 GPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISL--TGFAL 392 (1117)
Q Consensus 316 ~~~~p~Vgil~yrs~~~~g~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~~v~~~f~~~~~~~~~vDaiIn~--tgF~L 392 (1117)
.+.+-+|||..+..-..+ .+...++..|.+.|---+-||....-...++ ..=|.+|++|+. +||+|
T Consensus 4 ~~~~~~~gvcam~~k~~s---~pm~~il~rl~~~~~f~~iif~d~~il~~~v--------e~wp~~d~lisf~s~gfpl 71 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKS---KPMKEILERISLFKYITVVVFEEEVILNEPV--------ENWPLCDCLISFHSKGFPL 71 (330)
T ss_dssp --CCEEEEEESCHHHHTS---HHHHHHHHHHTTSTTEEEEECCHHHHHHSCG--------GGSCCCSEEEECCCTTCCH
T ss_pred CCCceEEEEEeccccccc---HHHHHHHHHhcccCcEEEEEeCCCceecCCc--------ccCCcCCEEEEeccCCCcH
Confidence 345678999999776655 5667788999988876676884321111222 334679999996 57776
No 20
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.89 E-value=1.5e+02 Score=32.36 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=46.3
Q ss_pred CCCcEEEEEEEcccch-hHHHHHHHHHHHhccCCccEEEEEehhhhcCChhhHHHHHHHhhcCCEEEEeccc---cHHHH
Q 001237 73 NLPTVKIVYVVLEAQY-QSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIF---VEELA 148 (1117)
Q Consensus 73 ~~~~~~~v~v~~~~~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~adi~~~sllf---~~~~~ 148 (1117)
|..++|+++|+..... ......+++.+.++.++.++++.. ...+.+|++. |.+.+++.|+||.+.-+ .+++.
T Consensus 1 ~~~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~-d~~~~~d~~~---f~~~L~~~D~vV~~~~~~~l~~~~~ 76 (281)
T 4e5v_A 1 GRKPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVI-SPEQGKDMSG---FVLDFSPYQLVVLDYNGDSWPEETN 76 (281)
T ss_dssp -CCCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEE-CCCTTSCCTT---CCCCCTTCSEEEECCCSSCCCHHHH
T ss_pred CCCceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEe-CCccccchhH---HhhhhhcCCEEEEeCCCCcCCHHHH
Confidence 3567899999886443 344445555555554545555542 2222223332 33478999999976642 45666
Q ss_pred HHHHHHHHH
Q 001237 149 LKIKAAVEK 157 (1117)
Q Consensus 149 ~~~~~~v~~ 157 (1117)
+++...|+.
T Consensus 77 ~~l~~yV~~ 85 (281)
T 4e5v_A 77 RRFLEYVQN 85 (281)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 666666654
No 21
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=20.87 E-value=49 Score=36.56 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=28.2
Q ss_pred ceEEEEeecCCC-CCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001237 497 KKLAITVFSFPP-DKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1117)
Q Consensus 497 KKVAIil~nyPp-~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 540 (1117)
-||++|..+||| ..|.++ ..+.++.+.|++.||+|.
T Consensus 3 MkIl~v~~~~~p~~~gG~~--------~~~~~la~~L~~~G~~V~ 39 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLA--------EALTAISEALASLGHEVL 39 (439)
T ss_dssp CEEEEECSCCTTSCSSSHH--------HHHHHHHHHHHHTTCEEE
T ss_pred eEEEEEecccCCcccCCHH--------HHHHHHHHHHHHCCCeEE
Confidence 389999999998 323332 368899999999999994
No 22
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=20.71 E-value=1.7e+02 Score=29.19 Aligned_cols=35 Identities=26% Similarity=0.089 Sum_probs=17.5
Q ss_pred cEEEEEEEcccchhHHHHHHHHHHHhccC-CccEEE
Q 001237 76 TVKIVYVVLEAQYQSALSAAVQALNQQVN-YASYEV 110 (1117)
Q Consensus 76 ~~~~v~v~~~~~~~~~~~~a~~~l~~~~~-~~~~~~ 110 (1117)
.||+++|...+.-.+.-.+.++.+.+... +.++++
T Consensus 6 ~Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~ 41 (193)
T 1rtt_A 6 DIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIEL 41 (193)
T ss_dssp -CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEE
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEE
Confidence 37898888876433333333444444332 344443
No 23
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.65 E-value=1.5e+02 Score=31.31 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCCeEEEEeeccc--cccC--CChHHHHHHHHHHHcCCcEEEEEcCCCCCch--hhhhhhccccCCCcceeEEEeccccc
Q 001237 318 DAPVIGLILQRSH--IVTG--DDSHYVAVIMELEARGAKVIPIFAGGLDFAG--PVERFFVDPVMKKPMVNSAISLTGFA 391 (1117)
Q Consensus 318 ~~p~Vgil~yrs~--~~~g--~~~~~dalI~aLE~~Gl~vipvf~~gl~~~~--~v~~~f~~~~~~~~~vDaiIn~tgF~ 391 (1117)
...+|||++.... ..+. -...+.++-++++++|.+++- +...-+... .+.+.+.. ..||+||-....
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~-~~~~~~~~~~~~~~~~l~~-----~~vdGiI~~~~~- 78 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQT-TVSNNMNDLMDEVYKMIKQ-----RMVDAFILLYSK- 78 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEE-CCCCSHHHHHHHHHHHHHT-----TCCSEEEESCCC-
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEE-EcCCCChHHHHHHHHHHHh-----CCcCEEEEcCcc-
Confidence 3468999984311 0010 124566777888889999873 322211100 11122221 359999875321
Q ss_pred ccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001237 392 LVGGPARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 392 L~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
..+...+.+++.++||+..
T Consensus 79 --------~~~~~~~~l~~~~iPvV~i 97 (295)
T 3hcw_A 79 --------ENDPIKQMLIDESMPFIVI 97 (295)
T ss_dssp --------TTCHHHHHHHHTTCCEEEE
T ss_pred --------cChHHHHHHHhCCCCEEEE
Confidence 1124556788899999854
No 24
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=20.53 E-value=46 Score=37.16 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=28.4
Q ss_pred CceEEEEeecCCCCC----CCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001237 496 EKKLAITVFSFPPDK----GNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1117)
Q Consensus 496 eKKVAIil~nyPp~~----g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~ 540 (1117)
-+||+||.++|||-. +..| | +-..+.++.+.|++.||+|.
T Consensus 20 mmkIl~i~~~~~p~~~~~~~~~G-G----~~~~~~~la~~L~~~G~~V~ 63 (438)
T 3c48_A 20 HMRVAMISMHTSPLQQPGTGDSG-G----MNVYILSTATELAKQGIEVD 63 (438)
T ss_dssp CCEEEEECTTSCTTCC--------C----HHHHHHHHHHHHHHTTCEEE
T ss_pred hheeeeEEeeccccccCCCCCCC-C----HHHHHHHHHHHHHhcCCEEE
Confidence 369999999998842 2333 1 22467899999999999994
No 25
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=20.36 E-value=2.4e+02 Score=33.23 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=63.4
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHc-CCcEEEEEcCCCCC-c---------hhhhhhhcccc-CC--CcceeEEEe
Q 001237 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-GAKVIPIFAGGLDF-A---------GPVERFFVDPV-MK--KPMVNSAIS 386 (1117)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~dalI~aLE~~-Gl~vipvf~~gl~~-~---------~~v~~~f~~~~-~~--~~~vDaiIn 386 (1117)
.|+|+.--..-+-| ..+++++++++++ |+.|+|+-+.|+.. + .++-++|.... .. ...-.--||
T Consensus 147 ~I~V~tTC~~e~IG--dDl~~v~~~~~~~~~~pVi~v~tpgf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VN 224 (492)
T 3u7q_A 147 GISVQSECPIGLIG--DDIESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVA 224 (492)
T ss_dssp CEEEEECTHHHHTT--CCHHHHHHHHHHHHTCCEEEECCCTTSSSSHHHHHHHHHHHHHHHTTTTTTTCCCCCCCTTEEE
T ss_pred EEEEECCcHHHHHh--cCHHHHHHHHHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHHhhhcccccccCCCCCcEE
Confidence 45555443332333 2467899999864 99999999988864 2 22334444320 00 011112345
Q ss_pred ccc-ccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001237 387 LTG-FALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1117)
Q Consensus 387 ~tg-F~L~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1117)
+.| |.. ..|..+-..+|+++++.|...++ ...+.++|++..
T Consensus 225 IiG~~~~-----~gD~~eik~lL~~~Gi~v~~~~~-g~~t~~ei~~~~ 266 (492)
T 3u7q_A 225 IIGDYNI-----GGDAWSSRILLEEMGLRCVAQWS-GDGSISEIELTP 266 (492)
T ss_dssp EEEECCB-----TTTTHHHHHHHHHTTCEEEEEEE-TTCCHHHHHHGG
T ss_pred EECCCCC-----hhhHHHHHHHHHHCCCeEEEEeC-CCCCHHHHHhhh
Confidence 443 322 23456677899999999998776 467899999864
No 26
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.27 E-value=1.3e+02 Score=31.42 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCCCeEEEEeecccc--ccC--CChHHHHHHHHHHHcCCcEEEEEcCCCCCc--hhhhhhhccccCCCcceeEEEecccc
Q 001237 317 PDAPVIGLILQRSHI--VTG--DDSHYVAVIMELEARGAKVIPIFAGGLDFA--GPVERFFVDPVMKKPMVNSAISLTGF 390 (1117)
Q Consensus 317 ~~~p~Vgil~yrs~~--~~g--~~~~~dalI~aLE~~Gl~vipvf~~gl~~~--~~v~~~f~~~~~~~~~vDaiIn~tgF 390 (1117)
....+||+++....- .+. -...+.++-+++++.|..++- +....+.. ..+.+.+.. ..+|+||-...-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-----~~vdgiIi~~~~ 79 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYM-STGETEEEIFNGVVKMVQG-----RQIGGIILLYSR 79 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEE-CCCCSHHHHHHHHHHHHHT-----TCCCEEEESCCB
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEE-EeCCCCHHHHHHHHHHHHc-----CCCCEEEEeCCC
Confidence 345799999876210 110 124566777888999999874 32221110 011122221 358998864321
Q ss_pred cccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001237 391 ALVGGPARQDHPRAIEALRKLDVPYIVA 418 (1117)
Q Consensus 391 ~L~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1117)
..+...+.+++.++||+..
T Consensus 80 ---------~~~~~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 80 ---------ENDRIIQYLHEQNFPFVLI 98 (292)
T ss_dssp ---------TTCHHHHHHHHTTCCEEEE
T ss_pred ---------CChHHHHHHHHCCCCEEEE
Confidence 1124567788999999854
Done!