Query 001238
Match_columns 1117
No_of_seqs 1118 out of 7598
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 18:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.9E-90 1E-94 876.2 35.5 658 28-696 7-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.7E-72 1.2E-76 710.5 27.2 579 80-665 80-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 5.7E-63 1.9E-67 620.8 38.9 585 79-668 9-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-62 1.3E-66 613.2 36.8 582 63-646 4-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4.6E-58 1.6E-62 568.4 26.0 536 79-646 17-565 (606)
6 4eco_A Uncharacterized protein 100.0 7.9E-58 2.7E-62 565.9 23.1 474 31-520 28-600 (636)
7 3j0a_A TOLL-like receptor 5; m 100.0 2E-56 6.8E-61 572.2 36.1 525 79-646 9-565 (844)
8 3t6q_A CD180 antigen; protein- 100.0 8.6E-57 2.9E-61 557.0 31.5 534 101-669 15-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-56 1.6E-60 568.8 35.0 526 102-670 8-566 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-56 5.5E-61 554.5 28.3 530 78-646 15-563 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 1E-56 3.5E-61 563.4 24.2 497 29-544 265-864 (876)
12 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-56 1.6E-60 550.3 25.4 532 101-671 14-565 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 1.6E-50 5.4E-55 497.2 25.6 515 79-673 12-540 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1.2E-50 4.3E-55 498.1 23.0 490 74-597 28-536 (570)
15 4aoj_A High affinity nerve gro 100.0 2.5E-50 8.5E-55 452.4 23.4 263 776-1061 41-322 (329)
16 4asz_A BDNF/NT-3 growth factor 100.0 1.2E-50 4.2E-55 448.6 19.7 261 776-1059 13-290 (299)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-50 4.2E-55 495.7 21.4 493 62-646 3-515 (549)
18 4eco_A Uncharacterized protein 100.0 1.1E-50 3.8E-55 501.9 18.4 510 27-592 21-600 (636)
19 4gt4_A Tyrosine-protein kinase 100.0 1.3E-49 4.4E-54 442.3 22.0 257 777-1056 27-304 (308)
20 3omv_A RAF proto-oncogene seri 100.0 2.2E-49 7.6E-54 438.1 23.5 260 776-1058 36-300 (307)
21 4b9d_A Serine/threonine-protei 100.0 2E-49 6.8E-54 444.3 19.9 250 776-1051 24-276 (350)
22 4fih_A Serine/threonine-protei 100.0 9E-49 3.1E-53 438.3 20.1 249 776-1051 74-323 (346)
23 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-48 1.1E-52 483.2 26.0 560 46-646 7-585 (635)
24 4g3f_A NF-kappa-beta-inducing 100.0 1.9E-48 6.7E-53 434.4 20.7 260 775-1061 57-319 (336)
25 3hmm_A TGF-beta receptor type- 100.0 1.6E-48 5.6E-53 434.9 18.4 272 776-1060 3-299 (303)
26 4ecn_A Leucine-rich repeat pro 100.0 1.1E-48 3.9E-53 490.6 18.9 463 98-592 323-864 (876)
27 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.9E-48 6.5E-53 429.1 17.8 249 776-1051 32-284 (311)
28 4fie_A Serine/threonine-protei 100.0 1.1E-47 3.8E-52 440.0 22.4 250 775-1051 150-400 (423)
29 3hyh_A Carbon catabolite-derep 100.0 2.3E-47 8E-52 415.0 21.4 246 775-1051 12-262 (275)
30 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-48 8.1E-53 471.9 15.1 455 101-646 3-486 (520)
31 3fpq_A Serine/threonine-protei 100.0 2E-47 6.7E-52 419.5 19.7 247 778-1051 28-282 (290)
32 4ase_A Vascular endothelial gr 100.0 1.5E-47 5.1E-52 433.2 17.9 263 775-1059 63-348 (353)
33 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-47 5.1E-52 464.8 17.9 456 78-596 4-485 (520)
34 2z81_A CD282 antigen, TOLL-lik 100.0 6.4E-47 2.2E-51 462.7 22.8 477 173-689 8-512 (549)
35 3ubd_A Ribosomal protein S6 ki 100.0 1.4E-47 4.9E-52 422.5 14.1 242 776-1046 24-271 (304)
36 4g31_A Eukaryotic translation 100.0 1.5E-45 5.2E-50 408.6 18.6 253 776-1051 5-279 (299)
37 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-44 4.2E-49 450.8 22.7 526 102-689 35-582 (635)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.3E-45 1.8E-49 446.2 17.4 353 260-646 139-515 (562)
39 4b99_A Mitogen-activated prote 100.0 1.6E-43 5.5E-48 407.4 21.5 202 776-984 54-265 (398)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.6E-44 1.9E-48 437.1 18.1 456 77-596 34-514 (562)
41 1jl5_A Outer protein YOPM; leu 100.0 4.4E-42 1.5E-46 406.3 25.5 420 96-645 9-433 (454)
42 4f9c_A Cell division cycle 7-r 100.0 1.6E-42 5.3E-47 395.2 19.8 201 773-984 18-249 (361)
43 1jl5_A Outer protein YOPM; leu 100.0 4.4E-42 1.5E-46 406.3 23.7 339 267-669 91-434 (454)
44 3v5w_A G-protein coupled recep 100.0 5.5E-42 1.9E-46 409.4 20.6 248 776-1051 189-449 (689)
45 1ogq_A PGIP-2, polygalacturona 100.0 4.6E-42 1.6E-46 386.8 18.8 295 29-401 2-306 (313)
46 3uto_A Twitchin; kinase, muscl 100.0 1.1E-41 3.9E-46 411.8 21.4 252 775-1051 156-410 (573)
47 2qkw_B Protein kinase; three-h 100.0 4.4E-41 1.5E-45 381.1 24.1 283 770-1060 33-317 (321)
48 3v47_A TOLL-like receptor 5B a 100.0 3E-41 1E-45 402.3 21.0 364 267-645 30-412 (455)
49 3v47_A TOLL-like receptor 5B a 100.0 3.1E-40 1.1E-44 393.5 27.1 354 243-596 30-412 (455)
50 3p86_A Serine/threonine-protei 100.0 2.9E-40 9.9E-45 371.5 21.7 261 775-1060 36-300 (309)
51 3uim_A Brassinosteroid insensi 100.0 4.5E-40 1.5E-44 373.8 21.6 281 770-1056 24-309 (326)
52 3fxz_A Serine/threonine-protei 100.0 6.7E-40 2.3E-44 366.6 22.6 253 772-1051 16-269 (297)
53 3s95_A LIMK-1, LIM domain kina 100.0 4.7E-40 1.6E-44 370.7 20.7 263 776-1059 10-283 (310)
54 2nru_A Interleukin-1 receptor- 100.0 5E-39 1.7E-43 361.9 26.0 278 770-1058 19-306 (307)
55 3kul_A Ephrin type-A receptor 100.0 1.8E-39 6E-44 368.1 22.1 264 775-1062 48-317 (325)
56 3fe3_A MAP/microtubule affinit 100.0 1.7E-39 5.9E-44 367.7 20.5 247 775-1051 14-264 (328)
57 2psq_A Fibroblast growth facto 100.0 2.3E-39 7.9E-44 373.6 21.0 261 775-1058 80-364 (370)
58 3zgw_A Maternal embryonic leuc 100.0 2.4E-39 8.4E-44 368.4 20.8 251 774-1052 8-261 (347)
59 4hcu_A Tyrosine-protein kinase 100.0 4.6E-39 1.6E-43 354.7 22.4 257 776-1059 10-267 (269)
60 3ugc_A Tyrosine-protein kinase 100.0 3.3E-39 1.1E-43 361.1 20.9 268 775-1060 9-293 (295)
61 3q4u_A Activin receptor type-1 100.0 1.9E-39 6.5E-44 364.2 19.0 264 775-1056 7-300 (301)
62 2qol_A Ephrin receptor; recept 100.0 2.7E-39 9.4E-44 373.2 20.6 263 775-1061 44-312 (373)
63 3sxs_A Cytoplasmic tyrosine-pr 100.0 7.8E-39 2.7E-43 352.7 22.7 258 775-1059 7-265 (268)
64 3soc_A Activin receptor type-2 100.0 1.2E-39 4.1E-44 369.2 16.4 270 775-1059 23-319 (322)
65 4eqm_A Protein kinase; transfe 100.0 9.5E-39 3.3E-43 356.8 23.5 264 775-1061 10-278 (294)
66 2izr_A Casein kinase I isoform 100.0 6.5E-39 2.2E-43 364.7 21.8 266 775-1061 8-284 (330)
67 3tki_A Serine/threonine-protei 100.0 4E-39 1.4E-43 364.7 19.9 253 776-1052 7-262 (323)
68 2eva_A TAK1 kinase - TAB1 chim 100.0 1.1E-38 3.8E-43 358.7 23.0 261 776-1064 8-269 (307)
69 1o6l_A RAC-beta serine/threoni 100.0 9.2E-39 3.2E-43 362.7 22.4 247 776-1051 5-260 (337)
70 2c30_A Serine/threonine-protei 100.0 2.4E-38 8.2E-43 358.1 24.1 247 778-1051 47-294 (321)
71 2yab_A Death-associated protei 100.0 2E-38 6.9E-43 363.2 23.6 252 774-1051 10-272 (361)
72 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-38 2.3E-42 370.8 28.7 357 91-548 35-391 (457)
73 3cbl_A C-FES, proto-oncogene t 100.0 5.1E-39 1.7E-43 372.1 18.5 260 775-1059 113-375 (377)
74 4euu_A Serine/threonine-protei 100.0 2.2E-38 7.6E-43 358.5 22.2 272 775-1057 8-308 (319)
75 3vhe_A Vascular endothelial gr 100.0 8.9E-39 3E-43 368.3 19.2 264 773-1058 19-355 (359)
76 3gen_A Tyrosine-protein kinase 100.0 2E-38 6.9E-43 352.4 21.0 258 775-1059 23-281 (283)
77 1luf_A Muscle-specific tyrosin 100.0 1.9E-38 6.4E-43 363.2 20.5 264 774-1060 45-337 (343)
78 3tt0_A Basic fibroblast growth 100.0 3E-38 1E-42 366.5 22.4 264 775-1061 68-355 (382)
79 3txo_A PKC-L, NPKC-ETA, protei 100.0 1E-38 3.6E-43 364.7 18.1 248 775-1051 22-280 (353)
80 3qup_A Tyrosine-protein kinase 100.0 1.4E-38 4.9E-43 360.9 18.7 269 775-1066 22-306 (323)
81 3niz_A Rhodanese family protei 100.0 5.3E-38 1.8E-42 353.7 23.1 259 775-1051 20-300 (311)
82 3bz5_A Internalin-J, INLJ; leu 100.0 6E-38 2.1E-42 371.2 24.5 367 132-599 28-394 (457)
83 3lxl_A Tyrosine-protein kinase 100.0 1.3E-38 4.5E-43 361.8 18.1 268 776-1061 23-306 (327)
84 3l9p_A Anaplastic lymphoma kin 100.0 6.9E-39 2.4E-43 369.4 15.9 263 776-1061 71-348 (367)
85 1qcf_A Haematopoetic cell kina 100.0 2.5E-38 8.7E-43 375.4 21.2 258 775-1059 187-445 (454)
86 4dc2_A Protein kinase C IOTA t 100.0 3.8E-38 1.3E-42 364.1 21.9 248 775-1046 51-307 (396)
87 3dtc_A Mitogen-activated prote 100.0 3.9E-38 1.3E-42 347.7 21.0 253 776-1056 7-271 (271)
88 1tki_A Titin; serine kinase, m 100.0 2.4E-38 8.3E-43 357.8 19.8 252 775-1052 4-258 (321)
89 2y0a_A Death-associated protei 100.0 5.1E-38 1.7E-42 356.3 22.5 251 775-1051 10-271 (326)
90 3op5_A Serine/threonine-protei 100.0 1.4E-38 4.7E-43 367.1 17.7 274 774-1062 33-333 (364)
91 3ork_A Serine/threonine protei 100.0 2E-38 6.7E-43 357.5 18.5 262 775-1058 11-281 (311)
92 3lb7_A RAF proto-oncogene seri 100.0 7.1E-38 2.4E-42 351.8 22.9 263 775-1060 35-302 (307)
93 1fot_A TPK1 delta, CAMP-depend 100.0 5.1E-38 1.7E-42 354.0 21.7 244 776-1051 6-258 (318)
94 4fvq_A Tyrosine-protein kinase 100.0 9.2E-39 3.1E-43 356.3 15.2 256 776-1063 8-280 (289)
95 1rjb_A FL cytokine receptor; k 100.0 3.8E-38 1.3E-42 360.7 20.4 265 774-1060 43-336 (344)
96 3kmu_A ILK, integrin-linked ki 100.0 6.7E-38 2.3E-42 345.7 21.5 252 776-1058 10-270 (271)
97 1csn_A Casein kinase-1; phosph 100.0 8.6E-38 2.9E-42 350.1 22.5 266 775-1060 9-285 (298)
98 2ivs_A Proto-oncogene tyrosine 100.0 4.4E-38 1.5E-42 355.3 20.2 262 775-1059 22-312 (314)
99 3gxj_A TGF-beta receptor type- 100.0 1.3E-39 4.6E-44 365.7 7.7 268 775-1060 2-299 (303)
100 1ob3_A PFPK5, cell division co 100.0 6.1E-38 2.1E-42 349.4 20.9 258 776-1051 2-280 (288)
101 3t9t_A Tyrosine-protein kinase 100.0 7.2E-38 2.5E-42 344.7 21.3 257 776-1059 8-265 (267)
102 2bdw_A Hypothetical protein K1 100.0 6E-38 2E-42 360.4 21.3 252 775-1052 28-285 (362)
103 3o0g_A Cell division protein k 100.0 9.4E-38 3.2E-42 348.7 22.1 256 776-1051 2-282 (292)
104 3soa_A Calcium/calmodulin-depe 100.0 6.5E-38 2.2E-42 368.5 21.7 254 773-1051 8-267 (444)
105 4f0f_A Serine/threonine-protei 100.0 7.6E-38 2.6E-42 348.5 21.2 253 775-1056 18-287 (287)
106 3c0i_A Peripheral plasma membr 100.0 3.5E-38 1.2E-42 361.4 18.8 253 776-1051 24-286 (351)
107 1xjd_A Protein kinase C, theta 100.0 2.6E-38 8.9E-43 360.0 17.6 249 773-1050 14-268 (345)
108 3kex_A Receptor tyrosine-prote 100.0 2.7E-38 9.1E-43 358.7 17.5 259 776-1060 13-278 (325)
109 1k9a_A Carboxyl-terminal SRC k 100.0 7E-38 2.4E-42 371.0 21.6 253 775-1059 192-446 (450)
110 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 5.6E-38 1.9E-42 372.0 20.6 258 775-1059 183-441 (452)
111 4e5w_A Tyrosine-protein kinase 100.0 9.1E-38 3.1E-42 350.6 21.3 264 776-1057 21-301 (302)
112 2zv2_A Calcium/calmodulin-depe 100.0 8.9E-38 3E-42 350.0 21.0 249 775-1051 12-292 (298)
113 1t46_A HOMO sapiens V-KIT hard 100.0 9.2E-38 3.1E-42 352.5 21.2 263 775-1059 22-308 (313)
114 4fr4_A YANK1, serine/threonine 100.0 9E-38 3.1E-42 359.7 21.4 249 776-1051 15-271 (384)
115 3a62_A Ribosomal protein S6 ki 100.0 7.7E-38 2.6E-42 354.9 20.5 247 776-1051 17-276 (327)
116 3h4j_B AMPK kdaid, SNF1-like p 100.0 2.9E-38 9.9E-43 358.2 17.0 247 775-1052 8-259 (336)
117 1rdq_E PKA C-alpha, CAMP-depen 100.0 8.6E-38 2.9E-42 356.9 21.0 244 776-1051 41-293 (350)
118 3a8x_A Protein kinase C IOTA t 100.0 7.7E-38 2.6E-42 356.8 20.5 247 776-1046 9-264 (345)
119 1kob_A Twitchin; kinase, intra 100.0 1E-37 3.6E-42 360.5 21.9 253 774-1051 49-304 (387)
120 1opk_A P150, C-ABL, proto-onco 100.0 5.2E-38 1.8E-42 376.3 20.0 258 775-1058 219-478 (495)
121 2i0e_A Protein kinase C-beta I 100.0 8.6E-38 2.9E-42 356.9 20.5 248 775-1051 19-276 (353)
122 2pvf_A Fibroblast growth facto 100.0 6.6E-38 2.3E-42 357.0 19.4 262 775-1059 34-319 (334)
123 3poz_A Epidermal growth factor 100.0 5.1E-38 1.7E-42 356.7 18.3 258 776-1059 15-279 (327)
124 3og7_A AKAP9-BRAF fusion prote 100.0 1.1E-37 3.6E-42 347.6 20.4 261 775-1058 23-288 (289)
125 3mdy_A Bone morphogenetic prot 100.0 1.4E-37 4.7E-42 355.0 21.8 272 774-1060 35-333 (337)
126 1qpc_A LCK kinase; alpha beta 100.0 1.3E-37 4.6E-42 345.0 21.0 258 775-1059 12-270 (279)
127 3hko_A Calcium/calmodulin-depe 100.0 7.7E-38 2.6E-42 358.4 19.4 264 770-1051 20-330 (345)
128 3v8s_A RHO-associated protein 100.0 3E-38 1E-42 367.0 16.1 255 773-1052 66-330 (410)
129 3qd2_B Eukaryotic translation 100.0 7.1E-38 2.4E-42 356.6 18.7 254 775-1051 5-325 (332)
130 2pmi_A Negative RE, cyclin-dep 100.0 2.4E-37 8.3E-42 349.4 22.8 202 775-984 4-211 (317)
131 3gni_B Strad alpha; kinase fol 100.0 6.8E-38 2.3E-42 364.9 18.6 207 775-985 24-240 (389)
132 1mp8_A Focal adhesion kinase 1 100.0 8.6E-38 2.9E-42 346.9 18.4 257 775-1058 14-276 (281)
133 2id5_A Lingo-1, leucine rich r 100.0 8.1E-38 2.8E-42 374.8 19.0 348 294-669 14-361 (477)
134 3lxp_A Non-receptor tyrosine-p 100.0 1.3E-37 4.4E-42 351.9 19.5 263 777-1059 32-311 (318)
135 1mqb_A Ephrin type-A receptor 100.0 1.9E-37 6.6E-42 352.7 21.1 262 776-1061 44-312 (333)
136 4eut_A Serine/threonine-protei 100.0 7.8E-38 2.7E-42 364.7 17.9 274 775-1059 8-310 (396)
137 4aw2_A Serine/threonine-protei 100.0 7.4E-38 2.5E-42 366.5 17.7 257 773-1051 71-338 (437)
138 3f66_A Hepatocyte growth facto 100.0 1.1E-37 3.8E-42 349.2 18.5 266 772-1060 21-293 (298)
139 3dbq_A Dual specificity protei 100.0 1.5E-37 5.2E-42 355.2 19.9 253 775-1053 8-275 (343)
140 2w4o_A Calcium/calmodulin-depe 100.0 1.7E-37 5.8E-42 355.2 20.3 250 775-1051 52-305 (349)
141 2x4f_A Myosin light chain kina 100.0 1.4E-37 4.9E-42 358.6 19.6 246 781-1051 94-342 (373)
142 2i1m_A Macrophage colony-stimu 100.0 9.1E-38 3.1E-42 355.9 17.8 263 774-1058 44-326 (333)
143 2jii_A Serine/threonine-protei 100.0 8E-38 2.7E-42 359.0 17.4 268 775-1061 41-339 (352)
144 1u59_A Tyrosine-protein kinase 100.0 2.3E-37 8E-42 344.5 20.6 261 776-1061 9-275 (287)
145 2h34_A Serine/threonine-protei 100.0 3.3E-37 1.1E-41 347.1 21.9 264 773-1061 31-299 (309)
146 1b6c_B TGF-B superfamily recep 100.0 2.2E-37 7.6E-42 354.1 20.7 270 773-1060 39-338 (342)
147 3uc3_A Serine/threonine-protei 100.0 2.2E-37 7.4E-42 355.9 20.6 253 775-1052 19-275 (361)
148 3sv0_A Casein kinase I-like; t 100.0 3.2E-37 1.1E-41 365.4 22.7 264 775-1058 6-278 (483)
149 2y94_A 5'-AMP-activated protei 100.0 2.4E-37 8.1E-42 365.9 21.4 246 776-1051 16-266 (476)
150 2v62_A Serine/threonine-protei 100.0 9.1E-38 3.1E-42 357.4 17.3 267 775-1057 36-327 (345)
151 3c1x_A Hepatocyte growth facto 100.0 9.7E-38 3.3E-42 359.8 17.6 263 776-1061 89-358 (373)
152 3f3z_A Calcium/calmodulin-depe 100.0 2.8E-37 9.6E-42 342.0 20.6 252 773-1051 6-261 (277)
153 1o6v_A Internalin A; bacterial 100.0 6.7E-37 2.3E-41 365.2 25.4 347 265-666 44-390 (466)
154 2wqm_A Serine/threonine-protei 100.0 1.7E-37 6E-42 349.7 19.1 269 775-1065 31-304 (310)
155 3g33_A Cell division protein k 100.0 5.3E-37 1.8E-41 345.4 23.0 260 774-1051 7-296 (308)
156 2r5t_A Serine/threonine-protei 100.0 1.3E-37 4.5E-42 357.8 18.2 246 775-1049 37-287 (373)
157 2eue_A Carbon catabolite derep 100.0 4E-37 1.4E-41 340.4 21.1 246 775-1051 12-262 (275)
158 3kfa_A Tyrosine-protein kinase 100.0 2.1E-37 7.1E-42 345.2 18.7 259 775-1059 12-272 (288)
159 2w1i_A JAK2; chromosomal rearr 100.0 3.7E-37 1.3E-41 349.6 21.1 266 775-1058 40-322 (326)
160 4ejn_A RAC-alpha serine/threon 100.0 1.3E-37 4.4E-42 368.9 17.9 248 775-1051 147-404 (446)
161 1o6v_A Internalin A; bacterial 100.0 1E-36 3.6E-41 363.5 25.6 348 240-643 43-390 (466)
162 2xir_A Vascular endothelial gr 100.0 2.6E-37 9E-42 349.3 19.3 264 774-1059 25-311 (316)
163 3fdn_A Serine/threonine-protei 100.0 3.9E-37 1.3E-41 341.3 20.2 247 775-1052 8-258 (279)
164 3mtl_A Cell division protein k 100.0 1.8E-37 6.3E-42 351.6 18.0 255 776-1051 2-281 (324)
165 3lzb_A Epidermal growth factor 100.0 1.5E-37 5.2E-42 352.5 17.2 259 776-1060 15-280 (327)
166 2acx_A G protein-coupled recep 100.0 2.9E-37 1E-41 369.4 20.5 253 775-1051 183-444 (576)
167 1p4o_A Insulin-like growth fac 100.0 1.9E-37 6.6E-42 351.4 17.7 262 774-1058 23-299 (322)
168 2a2a_A Death-associated protei 100.0 5.6E-37 1.9E-41 347.3 21.4 251 775-1051 11-272 (321)
169 3dls_A PAS domain-containing s 100.0 1.3E-37 4.3E-42 354.1 16.0 245 772-1052 20-275 (335)
170 2h8h_A Proto-oncogene tyrosine 100.0 2.5E-37 8.5E-42 373.8 19.4 258 775-1059 266-524 (535)
171 2qr7_A Ribosomal protein S6 ki 100.0 2.6E-37 8.8E-42 352.1 18.4 251 775-1051 21-277 (342)
172 2vd5_A DMPK protein; serine/th 100.0 1.5E-37 5.2E-42 361.3 16.5 255 774-1051 59-327 (412)
173 3cok_A Serine/threonine-protei 100.0 3.4E-37 1.2E-41 341.5 18.5 252 772-1051 7-262 (278)
174 2zmd_A Dual specificity protei 100.0 5.1E-37 1.7E-41 356.5 20.7 251 776-1052 56-321 (390)
175 3ll6_A Cyclin G-associated kin 100.0 1.4E-37 4.8E-42 354.9 15.8 260 775-1059 27-309 (337)
176 2ac3_A MAP kinase-interacting 100.0 7.5E-37 2.6E-41 345.6 21.4 261 775-1051 11-295 (316)
177 3pls_A Macrophage-stimulating 100.0 3E-37 1E-41 345.7 18.0 264 776-1061 21-290 (298)
178 1xbb_A Tyrosine-protein kinase 100.0 8.2E-37 2.8E-41 340.8 20.8 258 776-1059 16-280 (291)
179 2a19_B Interferon-induced, dou 100.0 6E-37 2E-41 340.6 19.5 251 775-1061 10-277 (284)
180 3uzp_A CKI-delta, CKID, casein 100.0 1.1E-36 3.9E-41 340.6 21.9 267 775-1061 8-283 (296)
181 4hgt_A Casein kinase I isoform 100.0 8.4E-37 2.9E-41 341.6 20.8 267 774-1061 7-283 (296)
182 2buj_A Serine/threonine-protei 100.0 9.4E-38 3.2E-42 353.1 13.2 265 775-1058 28-306 (317)
183 3c4z_A Rhodopsin kinase; Ser/T 100.0 8E-37 2.8E-41 365.1 21.9 254 776-1051 185-448 (543)
184 3is5_A Calcium-dependent prote 100.0 5.5E-37 1.9E-41 341.0 19.0 252 775-1051 21-278 (285)
185 3bhy_A Death-associated protei 100.0 1.1E-36 3.7E-41 338.4 21.4 258 776-1059 5-275 (283)
186 2id5_A Lingo-1, leucine rich r 100.0 1.3E-36 4.4E-41 364.4 23.7 322 270-594 14-335 (477)
187 3kk8_A Calcium/calmodulin depe 100.0 1.1E-36 3.7E-41 338.6 21.4 252 775-1052 5-262 (284)
188 3p1a_A MYT1 kinase, membrane-a 100.0 5.4E-37 1.9E-41 345.6 19.1 244 776-1051 57-304 (311)
189 1u5q_A Serine/threonine protei 100.0 4.4E-37 1.5E-41 351.2 18.5 247 776-1053 54-307 (348)
190 3cc6_A Protein tyrosine kinase 100.0 7.8E-37 2.7E-41 339.2 19.9 257 775-1058 11-273 (281)
191 2owb_A Serine/threonine-protei 100.0 9.8E-37 3.4E-41 347.3 21.0 249 775-1052 40-292 (335)
192 2clq_A Mitogen-activated prote 100.0 1.5E-36 5.3E-41 339.3 22.2 252 777-1051 23-278 (295)
193 3brb_A Proto-oncogene tyrosine 100.0 2.9E-37 9.8E-42 348.5 16.3 263 774-1059 32-309 (313)
194 2ozo_A Tyrosine-protein kinase 100.0 9.8E-37 3.3E-41 373.7 22.2 252 783-1059 343-599 (613)
195 2yfx_A Tyrosine-protein kinase 100.0 4.5E-37 1.5E-41 349.1 17.7 264 775-1061 29-307 (327)
196 3ttj_A Mitogen-activated prote 100.0 3.4E-37 1.1E-41 365.5 17.3 196 775-984 61-265 (464)
197 3kn6_A Ribosomal protein S6 ki 100.0 4.4E-37 1.5E-41 348.2 17.4 248 781-1051 16-270 (325)
198 1vzo_A Ribosomal protein S6 ki 100.0 4.1E-37 1.4E-41 353.0 17.3 253 776-1052 54-322 (355)
199 2rku_A Serine/threonine-protei 100.0 1.7E-36 5.7E-41 338.9 21.7 249 775-1052 14-266 (294)
200 3lm5_A Serine/threonine-protei 100.0 9.6E-37 3.3E-41 346.2 20.0 256 772-1051 24-287 (327)
201 1byg_A CSK, protein (C-termina 100.0 3.2E-37 1.1E-41 341.8 15.6 253 775-1059 20-274 (278)
202 2wtk_C Serine/threonine-protei 100.0 5.2E-36 1.8E-40 336.8 25.5 252 775-1052 4-264 (305)
203 3e7e_A HBUB1, BUB1A, mitotic c 100.0 4.8E-37 1.6E-41 354.5 17.2 254 774-1059 63-340 (365)
204 1ua2_A CAK, cell division prot 100.0 1.5E-36 5E-41 347.6 21.0 262 770-1052 4-292 (346)
205 3oz6_A Mitogen-activated prote 100.0 7.7E-37 2.6E-41 355.7 18.9 203 774-984 7-233 (388)
206 2yex_A Serine/threonine-protei 100.0 9.3E-37 3.2E-41 337.6 18.6 253 775-1051 6-261 (276)
207 3a7i_A MST3 kinase, serine/thr 100.0 2.6E-36 8.9E-41 338.9 22.5 250 775-1053 21-272 (303)
208 4agu_A Cyclin-dependent kinase 100.0 1.8E-36 6.1E-41 341.7 21.0 199 776-984 3-205 (311)
209 3gbz_A Kinase, CMGC CDK; ssgci 100.0 6.4E-37 2.2E-41 347.9 17.4 201 773-984 31-240 (329)
210 2vgo_A Serine/threonine-protei 100.0 2.4E-36 8.1E-41 335.8 21.5 245 776-1051 14-262 (284)
211 1fvr_A Tyrosine-protein kinase 100.0 3.2E-36 1.1E-40 342.1 22.6 260 776-1061 25-303 (327)
212 3mi9_A Cell division protein k 100.0 1.5E-36 5.3E-41 348.4 20.1 266 775-1051 16-311 (351)
213 1nxk_A MAP kinase-activated pr 100.0 1.5E-36 5E-41 353.6 20.2 251 775-1052 60-322 (400)
214 3llt_A Serine/threonine kinase 100.0 1.4E-36 4.7E-41 350.1 19.8 198 774-984 33-261 (360)
215 2jam_A Calcium/calmodulin-depe 100.0 9.8E-37 3.3E-41 342.5 18.1 251 774-1051 7-261 (304)
216 3g2f_A Bone morphogenetic prot 100.0 8.6E-37 2.9E-41 348.3 17.5 272 775-1059 12-319 (336)
217 2w5a_A Serine/threonine-protei 100.0 5.1E-37 1.7E-41 340.3 14.7 255 775-1054 5-270 (279)
218 3i6u_A CDS1, serine/threonine- 100.0 7.8E-37 2.7E-41 358.4 17.1 253 773-1051 132-399 (419)
219 4fl3_A Tyrosine-protein kinase 100.0 2E-36 6.9E-41 371.7 21.0 250 782-1057 375-630 (635)
220 1cm8_A Phosphorylated MAP kina 100.0 1.3E-36 4.6E-41 350.1 18.3 251 775-1051 24-307 (367)
221 2r3i_A Cell division protein k 100.0 3.6E-36 1.2E-40 337.1 21.3 256 776-1051 3-283 (299)
222 2vwi_A Serine/threonine-protei 100.0 6.9E-37 2.4E-41 343.6 15.4 265 773-1051 12-287 (303)
223 2h6d_A 5'-AMP-activated protei 100.0 2.5E-36 8.7E-41 334.1 19.6 247 776-1052 11-262 (276)
224 1u46_A ACK-1, activated CDC42 100.0 1.1E-36 3.7E-41 339.9 16.6 261 775-1059 17-285 (291)
225 2y7j_A Phosphorylase B kinase 100.0 4E-36 1.4E-40 346.1 21.4 254 772-1051 90-359 (365)
226 1j1b_A Glycogen synthase kinas 100.0 1.7E-36 5.8E-41 355.7 18.4 256 776-1051 54-336 (420)
227 3lij_A Calcium/calmodulin depe 100.0 4.1E-36 1.4E-40 360.7 21.7 251 774-1051 35-291 (494)
228 3rp9_A Mitogen-activated prote 100.0 4.4E-36 1.5E-40 357.3 21.8 196 775-977 52-279 (458)
229 3n9x_A Phosphotransferase; mal 100.0 2.8E-36 9.6E-41 355.4 19.7 202 775-983 25-253 (432)
230 3eqc_A Dual specificity mitoge 100.0 2.2E-36 7.5E-41 348.3 18.4 199 775-984 32-232 (360)
231 3byv_A Rhoptry kinase; malaria 100.0 2.7E-37 9.3E-42 357.9 10.8 244 773-1051 70-359 (377)
232 1x8b_A WEE1HU, WEE1-like prote 100.0 3.5E-36 1.2E-40 335.1 19.2 245 775-1051 10-279 (289)
233 1t4h_A Serine/threonine-protei 100.0 4.8E-36 1.6E-40 334.5 20.3 248 775-1051 25-282 (290)
234 3mwu_A Calmodulin-domain prote 100.0 3.2E-36 1.1E-40 361.1 19.7 252 774-1052 20-277 (486)
235 3nyv_A Calmodulin-domain prote 100.0 2.7E-36 9.4E-41 361.8 19.1 250 775-1051 25-281 (484)
236 2ycf_A Serine/threonine-protei 100.0 3.3E-36 1.1E-40 341.1 18.7 251 775-1051 9-274 (322)
237 2j7t_A Serine/threonine-protei 100.0 2E-36 6.7E-41 339.8 16.5 253 774-1051 17-275 (302)
238 3nsz_A CK II alpha, casein kin 100.0 7.7E-36 2.6E-40 339.5 21.5 193 775-984 35-233 (330)
239 3pfq_A PKC-B, PKC-beta, protei 100.0 3.8E-36 1.3E-40 371.8 19.9 248 775-1051 340-597 (674)
240 2xrw_A Mitogen-activated prote 100.0 4.4E-36 1.5E-40 346.9 18.9 196 775-984 24-228 (371)
241 3q5i_A Protein kinase; CDPK, m 100.0 8.5E-36 2.9E-40 358.8 21.9 253 773-1052 33-302 (504)
242 3pg1_A Mitogen-activated prote 100.0 7E-36 2.4E-40 344.5 20.1 204 770-984 16-236 (362)
243 1blx_A Cyclin-dependent kinase 100.0 1.1E-35 3.8E-40 337.6 21.0 260 774-1051 9-296 (326)
244 2fst_X Mitogen-activated prote 100.0 2.7E-36 9.2E-41 347.2 16.1 195 775-984 28-232 (367)
245 2pml_X PFPK7, Ser/Thr protein 100.0 2.3E-36 7.9E-41 346.6 15.5 256 775-1051 30-322 (348)
246 3kvw_A DYRK2, dual specificity 100.0 8.4E-36 2.9E-40 350.6 20.3 197 775-984 96-301 (429)
247 4e7w_A Glycogen synthase kinas 100.0 4.8E-36 1.7E-40 348.9 17.7 257 775-1051 39-321 (394)
248 4aaa_A Cyclin-dependent kinase 100.0 4.2E-36 1.4E-40 341.7 16.7 200 775-984 24-227 (331)
249 3qyz_A Mitogen-activated prote 100.0 1.1E-35 3.7E-40 342.9 20.2 260 775-1051 26-313 (364)
250 1phk_A Phosphorylase kinase; g 100.0 1.6E-35 5.5E-40 331.6 20.8 253 773-1051 14-283 (298)
251 3com_A Serine/threonine-protei 100.0 1.6E-35 5.5E-40 334.3 20.9 251 774-1051 27-278 (314)
252 2x7f_A TRAF2 and NCK-interacti 100.0 1.8E-35 6.2E-40 335.8 21.3 253 773-1051 21-286 (326)
253 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.5E-36 1.2E-40 340.6 14.9 262 775-1061 32-305 (319)
254 3eb0_A Putative uncharacterize 100.0 8.4E-36 2.9E-40 346.2 18.3 264 773-1057 4-329 (383)
255 2i6l_A Mitogen-activated prote 100.0 9.2E-36 3.1E-40 337.2 17.8 257 775-1051 10-305 (320)
256 3q60_A ROP5B; pseudokinase, tr 100.0 8E-37 2.7E-41 353.3 9.0 254 775-1051 61-352 (371)
257 3rgf_A Cyclin-dependent kinase 100.0 7.4E-36 2.5E-40 349.4 17.2 203 776-985 20-239 (405)
258 4exu_A Mitogen-activated prote 100.0 1.8E-35 6.3E-40 341.6 19.7 195 774-984 40-244 (371)
259 2wei_A Calmodulin-domain prote 100.0 3.4E-35 1.2E-39 327.1 20.6 253 772-1051 18-276 (287)
260 3fme_A Dual specificity mitoge 100.0 1.2E-35 4E-40 331.3 16.9 253 775-1051 6-266 (290)
261 2b9h_A MAP kinase FUS3, mitoge 100.0 1.8E-35 6.3E-40 339.8 18.6 202 775-984 10-225 (353)
262 2j0j_A Focal adhesion kinase 1 100.0 2.2E-35 7.7E-40 363.8 20.5 257 775-1058 389-651 (656)
263 3e3p_A Protein kinase, putativ 100.0 1.4E-35 4.9E-40 341.7 17.2 206 770-984 17-234 (360)
264 3cek_A Dual specificity protei 100.0 2.8E-35 9.5E-40 332.2 19.1 253 774-1052 26-293 (313)
265 1zy4_A Serine/threonine-protei 100.0 3.9E-35 1.3E-39 329.2 18.6 254 775-1051 5-283 (303)
266 1wak_A Serine/threonine-protei 100.0 1.8E-35 6.2E-40 345.7 16.1 199 775-985 36-296 (397)
267 3fhr_A MAP kinase-activated pr 100.0 3.2E-35 1.1E-39 334.8 17.6 251 775-1051 27-287 (336)
268 3an0_A Dual specificity mitoge 100.0 1.8E-35 6.3E-40 337.8 15.6 253 775-1051 50-310 (340)
269 3o6n_A APL1; leucine-rich repe 100.0 4.7E-35 1.6E-39 341.1 18.9 349 52-424 3-352 (390)
270 2vx3_A Dual specificity tyrosi 100.0 7.4E-35 2.5E-39 338.1 20.1 200 774-984 52-260 (382)
271 3coi_A Mitogen-activated prote 100.0 5.7E-35 1.9E-39 335.5 18.9 253 775-1051 23-305 (353)
272 1z57_A Dual specificity protei 100.0 4.9E-35 1.7E-39 334.1 17.4 197 775-984 13-236 (339)
273 2iwi_A Serine/threonine-protei 100.0 5.5E-35 1.9E-39 329.6 17.4 243 772-1051 27-283 (312)
274 3a99_A Proto-oncogene serine/t 100.0 3.5E-35 1.2E-39 332.2 15.5 241 774-1051 41-293 (320)
275 2rio_A Serine/threonine-protei 100.0 3.4E-35 1.2E-39 346.2 15.7 254 777-1051 16-295 (434)
276 3aln_A Dual specificity mitoge 100.0 1.2E-34 4E-39 329.2 17.6 256 775-1051 21-285 (327)
277 3o6n_A APL1; leucine-rich repe 100.0 1.1E-34 3.7E-39 338.0 17.5 335 313-690 43-377 (390)
278 3oja_B Anopheles plasmodium-re 100.0 2.2E-34 7.5E-39 354.1 19.0 348 51-449 8-359 (597)
279 1q8y_A SR protein kinase; tran 100.0 1.3E-34 4.6E-39 335.3 15.7 198 776-985 19-238 (373)
280 4fcg_A Uncharacterized protein 100.0 7.3E-35 2.5E-39 329.9 13.1 289 28-376 22-314 (328)
281 3oja_B Anopheles plasmodium-re 100.0 1.9E-34 6.6E-39 354.5 17.6 334 314-690 50-383 (597)
282 2eu9_A Dual specificity protei 100.0 2.7E-34 9.3E-39 330.2 17.7 197 775-984 18-241 (355)
283 2dyl_A Dual specificity mitoge 100.0 3.4E-34 1.1E-38 324.1 17.6 251 775-1051 24-283 (318)
284 3p23_A Serine/threonine-protei 100.0 1.2E-34 3.9E-39 340.5 12.5 250 776-1051 24-283 (432)
285 3qa8_A MGC80376 protein; kinas 100.0 7.4E-35 2.5E-39 351.4 10.7 203 774-984 12-225 (676)
286 3uqc_A Probable conserved tran 100.0 4.3E-34 1.5E-38 317.1 15.1 233 776-1060 31-267 (286)
287 3dzo_A Rhoptry kinase domain; 100.0 4.8E-34 1.7E-38 334.1 15.8 244 773-1051 75-363 (413)
288 4fmz_A Internalin; leucine ric 100.0 7.5E-33 2.6E-37 317.1 22.8 307 239-592 40-346 (347)
289 4fmz_A Internalin; leucine ric 100.0 1.9E-32 6.6E-37 313.7 24.5 309 213-568 38-346 (347)
290 2pzi_A Probable serine/threoni 100.0 5.6E-34 1.9E-38 355.3 11.9 238 776-1056 80-326 (681)
291 2ft3_A Biglycan; proteoglycan, 100.0 4.3E-32 1.5E-36 308.6 24.4 294 268-590 34-331 (332)
292 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-33 9.8E-38 315.0 12.9 258 411-694 50-312 (313)
293 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-32 1.7E-36 308.1 23.1 294 292-615 34-331 (332)
294 2vuw_A Serine/threonine-protei 100.0 1.2E-33 4E-38 322.2 8.2 191 775-983 19-278 (336)
295 3m2w_A MAP kinase-activated pr 100.0 1.2E-32 4.2E-37 308.2 15.5 232 775-1052 16-257 (299)
296 1xku_A Decorin; proteoglycan, 100.0 9.4E-32 3.2E-36 305.6 22.0 289 268-590 32-330 (330)
297 1xku_A Decorin; proteoglycan, 100.0 5.8E-31 2E-35 299.1 26.0 289 244-542 32-330 (330)
298 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-34 6.2E-39 344.4 -15.7 266 260-544 106-411 (461)
299 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-35 1.9E-39 348.8 -21.1 239 407-665 166-441 (461)
300 2z66_A Variable lymphocyte rec 100.0 2.2E-29 7.4E-34 282.9 16.4 283 61-407 5-294 (306)
301 3ogk_B Coronatine-insensitive 100.0 7.4E-33 2.5E-37 341.5 -18.4 450 62-541 41-548 (592)
302 2z66_A Variable lymphocyte rec 100.0 2E-28 6.7E-33 275.1 19.1 249 270-522 10-263 (306)
303 2z80_A TOLL-like receptor 2, v 100.0 1.6E-29 5.4E-34 290.1 9.2 284 337-645 29-318 (353)
304 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-28 6.6E-33 272.1 17.5 253 414-670 14-267 (285)
305 3ogk_B Coronatine-insensitive 100.0 5.9E-32 2E-36 333.4 -13.2 442 110-565 61-548 (592)
306 2z80_A TOLL-like receptor 2, v 100.0 7.8E-29 2.7E-33 284.3 13.0 277 266-569 30-315 (353)
307 3zyj_A Leucine-rich repeat-con 99.9 2.9E-27 9.9E-32 279.7 22.6 248 268-520 44-292 (440)
308 3zyj_A Leucine-rich repeat-con 99.9 1.1E-27 3.7E-32 283.4 17.0 253 364-646 44-297 (440)
309 3zyi_A Leucine-rich repeat-con 99.9 1.4E-27 4.7E-32 283.5 17.9 232 412-646 76-308 (452)
310 3zyi_A Leucine-rich repeat-con 99.9 3.7E-27 1.3E-31 279.8 21.4 248 268-520 55-303 (452)
311 1wwl_A Monocyte differentiatio 99.9 2E-28 6.7E-33 275.5 9.7 248 118-376 39-309 (312)
312 1wwl_A Monocyte differentiatio 99.9 8.1E-29 2.8E-33 278.7 6.1 250 382-665 38-310 (312)
313 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-27 4.9E-32 265.0 16.0 225 270-521 14-239 (285)
314 4fcg_A Uncharacterized protein 99.9 1.9E-27 6.4E-32 269.1 17.0 234 267-544 81-314 (328)
315 4azs_A Methyltransferase WBDD; 99.9 3.9E-29 1.3E-33 302.3 2.8 185 783-981 241-437 (569)
316 3o53_A Protein LRIM1, AGAP0063 99.9 7.6E-28 2.6E-32 271.4 6.7 265 103-406 15-282 (317)
317 3o53_A Protein LRIM1, AGAP0063 99.9 4E-28 1.4E-32 273.7 4.4 261 272-546 15-278 (317)
318 3g06_A SSPH2 (leucine-rich rep 99.9 6.8E-26 2.3E-30 275.5 22.9 266 268-601 41-306 (622)
319 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-25 1.4E-29 268.7 25.3 268 220-531 41-308 (622)
320 2o6q_A Variable lymphocyte rec 99.9 1.3E-25 4.4E-30 247.0 19.0 73 60-135 2-74 (270)
321 2p1m_B Transport inhibitor res 99.9 4.7E-30 1.6E-34 316.6 -22.3 459 62-566 34-542 (594)
322 3oja_A Leucine-rich immune mol 99.9 2.1E-26 7.3E-31 274.7 8.3 237 265-539 32-270 (487)
323 3oja_A Leucine-rich immune mol 99.9 1.9E-26 6.5E-31 275.2 6.0 238 240-515 31-270 (487)
324 2z62_A TOLL-like receptor 4, v 99.9 3.9E-25 1.3E-29 244.1 15.3 207 437-645 30-241 (276)
325 2z62_A TOLL-like receptor 4, v 99.9 3.9E-24 1.3E-28 236.1 18.2 208 388-596 29-241 (276)
326 3en9_A Glycoprotease, O-sialog 99.9 3.8E-25 1.3E-29 266.0 9.9 188 779-983 339-539 (540)
327 2p1m_B Transport inhibitor res 99.9 5.1E-28 1.7E-32 298.4 -15.9 426 215-663 62-543 (594)
328 3rfs_A Internalin B, repeat mo 99.9 6.8E-24 2.3E-28 233.4 16.4 231 385-629 17-247 (272)
329 3rfs_A Internalin B, repeat mo 99.9 3.5E-23 1.2E-27 227.7 21.4 232 144-413 17-248 (272)
330 2o6q_A Variable lymphocyte rec 99.9 2.3E-23 7.9E-28 228.9 19.8 206 412-645 17-222 (270)
331 1p9a_G Platelet glycoprotein I 99.9 3.5E-23 1.2E-27 229.6 20.9 207 407-645 6-212 (290)
332 1p9a_G Platelet glycoprotein I 99.9 1.1E-22 3.6E-27 225.6 17.1 204 287-521 6-209 (290)
333 3goz_A Leucine-rich repeat-con 99.9 9.6E-25 3.3E-29 250.9 -1.3 261 319-599 2-304 (362)
334 3goz_A Leucine-rich repeat-con 99.9 1.9E-24 6.7E-29 248.3 -1.0 259 295-570 2-299 (362)
335 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.6E-27 228.6 12.5 228 98-352 64-307 (310)
336 2ast_B S-phase kinase-associat 99.9 5.4E-25 1.8E-29 250.6 -7.2 267 62-361 36-315 (336)
337 2xwt_C Thyrotropin receptor; s 99.9 1.6E-22 5.4E-27 218.0 12.2 203 282-517 25-236 (239)
338 3m19_A Variable lymphocyte rec 99.9 7E-22 2.4E-26 214.6 16.0 180 436-643 15-194 (251)
339 2xwt_C Thyrotropin receptor; s 99.9 2.4E-22 8.1E-27 216.6 11.8 197 436-661 32-236 (239)
340 4glp_A Monocyte differentiatio 99.9 1.4E-22 4.8E-27 227.5 10.1 198 317-520 93-307 (310)
341 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.8E-26 212.1 17.6 182 411-595 14-195 (251)
342 2ca6_A RAN GTPase-activating p 99.9 1.3E-24 4.5E-29 252.3 -7.4 254 283-547 24-319 (386)
343 2ast_B S-phase kinase-associat 99.9 6.2E-24 2.1E-28 241.8 -2.3 255 99-385 48-315 (336)
344 2ca6_A RAN GTPase-activating p 99.9 8.4E-24 2.9E-28 245.5 -2.0 239 428-667 25-319 (386)
345 1zar_A RIO2 kinase; serine kin 99.9 2.2E-22 7.6E-27 221.6 8.5 148 773-955 87-252 (282)
346 4ay9_X Follicle-stimulating ho 99.9 1.3E-21 4.4E-26 223.6 13.8 240 270-518 12-257 (350)
347 4ay9_X Follicle-stimulating ho 99.8 2E-21 6.8E-26 222.0 13.4 200 318-521 12-216 (350)
348 1h6u_A Internalin H; cell adhe 99.8 2.4E-21 8.2E-26 217.0 13.3 216 386-644 18-233 (308)
349 1h6u_A Internalin H; cell adhe 99.8 2.6E-21 8.9E-26 216.7 12.9 213 411-665 19-231 (308)
350 3cvr_A Invasion plasmid antige 99.8 2.2E-21 7.4E-26 232.9 9.0 185 100-385 61-252 (571)
351 2o6s_A Variable lymphocyte rec 99.8 3.9E-20 1.3E-24 194.6 16.1 181 414-604 10-190 (208)
352 3cvr_A Invasion plasmid antige 99.8 9.8E-20 3.3E-24 218.6 16.4 191 292-532 60-255 (571)
353 2o6s_A Variable lymphocyte rec 99.8 1.2E-19 3.9E-24 191.0 14.4 151 271-424 11-161 (208)
354 4b8c_D Glucose-repressible alc 99.8 1.4E-20 4.8E-25 234.7 3.2 269 31-329 130-405 (727)
355 1m9s_A Internalin B; cell inva 99.8 9.3E-19 3.2E-23 212.6 16.3 198 385-598 19-216 (605)
356 1h6t_A Internalin B; cell adhe 99.8 6.1E-19 2.1E-23 195.6 13.2 193 385-593 22-214 (291)
357 2v9t_B SLIT homolog 2 protein 99.8 4.6E-19 1.6E-23 187.8 11.5 157 462-646 14-170 (220)
358 2v70_A SLIT-2, SLIT homolog 2 99.8 3.9E-19 1.3E-23 188.4 10.8 136 510-646 35-171 (220)
359 1dce_A Protein (RAB geranylger 99.8 1E-20 3.5E-25 228.5 -2.4 216 119-393 346-566 (567)
360 1h6t_A Internalin B; cell adhe 99.8 6.9E-19 2.4E-23 195.1 10.7 190 436-665 25-214 (291)
361 2xot_A Amphoterin-induced prot 99.8 5.1E-19 1.8E-23 202.8 10.0 181 438-646 21-207 (361)
362 2xot_A Amphoterin-induced prot 99.8 9.8E-19 3.4E-23 200.5 11.7 177 414-593 21-203 (361)
363 1dce_A Protein (RAB geranylger 99.8 2.1E-20 7E-25 225.9 -3.1 216 312-561 346-566 (567)
364 1m9s_A Internalin B; cell inva 99.8 3.8E-18 1.3E-22 207.2 16.3 109 262-378 104-212 (605)
365 2v9t_B SLIT homolog 2 protein 99.8 4.1E-18 1.4E-22 180.5 14.2 152 414-592 14-165 (220)
366 3e6j_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 182.1 14.0 156 461-645 21-176 (229)
367 1zth_A RIO1 serine protein kin 99.7 1.2E-18 4.2E-23 189.4 9.6 136 778-928 49-219 (258)
368 1xeu_A Internalin C; cellular 99.7 4.8E-19 1.7E-23 193.2 5.7 171 385-570 17-187 (263)
369 2v70_A SLIT-2, SLIT homolog 2 99.7 8E-18 2.7E-22 178.3 14.5 156 414-595 14-169 (220)
370 4b8c_D Glucose-repressible alc 99.7 2.1E-18 7.2E-23 215.0 8.7 189 466-665 208-405 (727)
371 3e6j_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 174.8 16.3 152 413-568 21-172 (229)
372 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.1E-22 181.4 12.4 171 409-594 17-187 (263)
373 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.4E-22 172.0 10.4 175 486-690 11-186 (192)
374 3sb4_A Hypothetical leucine ri 99.7 1.8E-18 6.1E-23 195.7 0.9 101 483-585 226-327 (329)
375 4ezg_A Putative uncharacterize 99.7 5.3E-17 1.8E-21 168.9 10.7 133 407-545 40-173 (197)
376 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4.1E-21 165.3 12.3 132 462-596 11-143 (192)
377 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4.3E-22 188.8 4.6 216 386-605 100-323 (329)
378 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.3E-21 166.0 11.4 152 241-400 42-194 (197)
379 4gyi_A RIO2 kinase; protein ki 99.6 1.9E-16 6.4E-21 178.0 8.7 136 777-928 96-265 (397)
380 4fdw_A Leucine rich hypothetic 99.6 6.1E-15 2.1E-19 170.2 18.0 114 476-592 264-383 (401)
381 4fdw_A Leucine rich hypothetic 99.6 5.1E-15 1.7E-19 170.9 17.3 263 291-566 113-381 (401)
382 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 153.0 10.4 136 435-597 24-164 (168)
383 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.3E-20 153.4 9.8 132 267-400 24-160 (168)
384 4fs7_A Uncharacterized protein 99.6 2.6E-14 8.8E-19 165.8 21.2 312 261-589 65-376 (394)
385 4fs7_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 164.0 20.1 330 236-584 64-393 (394)
386 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.9E-20 148.4 7.9 127 267-395 17-148 (149)
387 2wfh_A SLIT homolog 2 protein 99.6 3.5E-15 1.2E-19 154.3 8.7 132 486-646 13-144 (193)
388 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.8E-19 149.1 12.7 128 462-593 13-140 (193)
389 2je0_A Acidic leucine-rich nuc 99.5 6E-15 2E-19 145.7 8.5 127 411-539 17-148 (149)
390 2o6r_A Variable lymphocyte rec 99.5 2.4E-14 8.2E-19 145.9 12.8 132 462-596 10-141 (177)
391 2o6r_A Variable lymphocyte rec 99.5 5.6E-14 1.9E-18 143.2 13.1 111 460-570 29-139 (177)
392 1ds9_A Outer arm dynein; leuci 99.5 1.6E-15 5.4E-20 157.8 -3.9 152 481-664 16-185 (198)
393 1a9n_A U2A', U2A'; complex (nu 99.5 8.4E-14 2.9E-18 141.7 8.4 132 407-543 15-152 (176)
394 1a9n_A U2A', U2A'; complex (nu 99.4 6.1E-14 2.1E-18 142.7 7.0 133 262-400 14-153 (176)
395 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.7E-20 158.3 -7.3 150 436-592 19-185 (198)
396 4gt6_A Cell surface protein; l 99.4 5.1E-12 1.7E-16 146.4 18.0 313 263-590 59-389 (394)
397 3g39_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 129.8 11.8 109 412-523 10-118 (170)
398 3g39_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 129.3 12.3 107 269-378 11-117 (170)
399 2r9u_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 129.2 12.2 105 270-377 15-119 (174)
400 2r9u_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 128.0 11.8 107 413-522 14-120 (174)
401 4gt6_A Cell surface protein; l 99.3 3.9E-11 1.3E-15 139.0 18.2 303 279-592 51-370 (394)
402 3tm0_A Aminoglycoside 3'-phosp 99.3 1.2E-11 4.1E-16 134.7 11.0 147 772-927 10-213 (263)
403 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 154.2 -6.6 161 483-664 72-252 (372)
404 2ifg_A High affinity nerve gro 99.2 1.7E-11 5.7E-16 139.5 7.2 131 511-669 12-146 (347)
405 3un9_A NLR family member X1; l 99.1 3.1E-13 1.1E-17 154.4 -9.3 159 410-568 71-252 (372)
406 2ifg_A High affinity nerve gro 99.1 1.3E-10 4.5E-15 132.1 11.4 106 414-522 11-118 (347)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 1.5E-10 5.3E-15 125.7 10.7 137 777-927 21-214 (264)
408 4h09_A Hypothetical leucine ri 99.1 3.3E-09 1.1E-13 122.1 22.4 314 239-578 42-355 (379)
409 4h09_A Hypothetical leucine ri 99.1 1.2E-09 4.1E-14 125.8 18.4 293 262-592 41-345 (379)
410 3dxp_A Putative acyl-COA dehyd 99.0 1.3E-09 4.3E-14 124.5 11.6 141 781-927 43-248 (359)
411 3sg8_A APH(2'')-ID; antibiotic 98.9 9.4E-10 3.2E-14 122.4 7.6 189 781-982 25-287 (304)
412 3rw6_A Nuclear RNA export fact 98.8 1.9E-10 6.5E-15 123.2 -2.6 67 119-187 167-237 (267)
413 2ra8_A Uncharacterized protein 98.7 2E-09 6.8E-14 121.7 -0.3 89 285-376 166-265 (362)
414 2ra8_A Uncharacterized protein 98.7 2.3E-09 7.9E-14 121.2 -0.5 187 116-326 133-341 (362)
415 3r70_A Aminoglycoside phosphot 98.6 2E-07 6.9E-12 104.2 12.4 137 777-928 38-238 (320)
416 3d1u_A Putative fructosamine-3 98.5 3.7E-07 1.3E-11 99.9 13.1 76 780-859 19-97 (288)
417 3tdw_A Gentamicin resistance p 98.4 1.2E-06 4.3E-11 97.0 12.6 136 781-927 24-224 (306)
418 4gkh_A Aminoglycoside 3'-phosp 98.4 1.5E-06 5E-11 94.7 11.5 136 782-927 30-223 (272)
419 3ovc_A Hygromycin-B 4-O-kinase 98.2 2.9E-06 9.9E-11 96.2 11.2 144 778-927 43-243 (362)
420 1io0_A Tropomodulin; LRR prote 98.2 1.1E-07 3.6E-12 97.0 -0.7 114 479-592 32-164 (185)
421 3ats_A Putative uncharacterize 98.2 2.4E-06 8.1E-11 97.1 10.0 80 782-861 26-122 (357)
422 3rw6_A Nuclear RNA export fact 98.2 7.5E-07 2.6E-11 95.3 4.0 80 96-177 168-258 (267)
423 1io0_A Tropomodulin; LRR prote 98.2 1.4E-07 4.8E-12 96.1 -1.8 91 430-520 31-136 (185)
424 2olc_A MTR kinase, methylthior 97.9 3E-05 1E-09 89.3 12.1 75 781-857 35-120 (397)
425 3jr1_A Putative fructosamine-3 97.9 4.8E-05 1.6E-09 83.8 12.2 138 781-923 41-232 (312)
426 2q83_A YTAA protein; 2635576, 97.9 3.7E-05 1.3E-09 86.6 10.7 140 782-926 38-251 (346)
427 3f7w_A Putative fructosamine-3 97.9 3.3E-05 1.1E-09 84.7 9.9 79 777-859 16-97 (288)
428 2pyw_A Uncharacterized protein 97.5 0.00024 8.1E-09 82.4 10.9 73 781-856 39-122 (420)
429 3e4g_A ATP synthase subunit S, 97.4 4.3E-05 1.5E-09 75.6 1.8 39 483-521 61-100 (176)
430 3csv_A Aminoglycoside phosphot 97.3 0.00065 2.2E-08 76.0 11.2 142 782-928 24-218 (333)
431 3e4g_A ATP synthase subunit S, 97.3 6.7E-05 2.3E-09 74.2 1.7 81 460-540 62-148 (176)
432 2ppq_A HSK, HK, homoserine kin 97.2 0.00054 1.9E-08 76.2 8.6 143 782-927 28-217 (322)
433 1zyl_A Hypothetical protein YI 97.2 0.0024 8.3E-08 71.0 13.7 142 782-927 32-223 (328)
434 3dxq_A Choline/ethanolamine ki 97.2 0.0012 4E-08 72.7 10.5 71 781-859 23-95 (301)
435 1nw1_A Choline kinase (49.2 KD 97.1 0.0013 4.3E-08 76.2 10.9 72 782-859 79-159 (429)
436 3feg_A Choline/ethanolamine ki 97.1 0.0016 5.6E-08 73.5 11.0 141 782-927 56-254 (379)
437 2qg7_A Ethanolamine kinase PV0 97.1 0.0026 8.8E-08 73.9 12.6 73 782-859 114-188 (458)
438 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00011 3.8E-09 74.1 -0.3 110 483-592 41-170 (197)
439 3c5i_A Choline kinase; choline 96.8 0.0028 9.5E-08 71.9 9.2 73 782-859 39-121 (369)
440 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00021 7.1E-09 72.2 -0.4 39 410-448 40-83 (197)
441 3i1a_A Spectinomycin phosphotr 96.7 0.0046 1.6E-07 69.1 10.2 66 787-859 34-108 (339)
442 3rfe_A Platelet glycoprotein I 96.4 0.0023 7.9E-08 60.3 4.3 61 583-646 12-73 (130)
443 3f2s_A CK, chetk-alpha, cholin 96.1 0.024 8E-07 64.2 11.4 142 782-927 58-280 (401)
444 3mes_A Choline kinase; malaria 95.8 0.022 7.6E-07 65.1 9.8 73 782-859 76-157 (424)
445 3rfe_A Platelet glycoprotein I 95.8 0.012 4.1E-07 55.3 6.1 56 319-376 12-68 (130)
446 2yle_A Protein spire homolog 1 92.6 0.3 1E-05 49.4 8.3 104 857-982 33-136 (229)
447 3g15_A CK, chetk-alpha, cholin 92.2 0.45 1.5E-05 54.1 10.3 30 898-927 245-280 (401)
448 2ks1_B Epidermal growth factor 88.8 0.43 1.5E-05 34.5 3.8 28 712-739 13-40 (44)
449 2l2t_A Receptor tyrosine-prote 88.4 0.53 1.8E-05 33.9 4.0 29 711-739 11-39 (44)
450 2jwa_A Receptor tyrosine-prote 82.5 1.9 6.6E-05 31.0 4.5 26 713-738 14-39 (44)
451 4ano_A ESSB; membrane protein, 82.3 3.4 0.00011 41.9 8.1 85 830-927 48-133 (219)
452 4ann_A ESSB; membrane protein, 82.2 2.2 7.7E-05 43.0 6.8 115 830-983 43-158 (215)
453 2k1k_A Ephrin type-A receptor 78.9 3.1 0.0001 29.1 4.5 21 710-730 10-30 (38)
454 3cxl_A N-chimerin; SH2, RHO-GA 74.3 0.38 1.3E-05 55.7 -1.9 61 779-842 145-214 (463)
455 2lz0_A Uncharacterized protein 55.5 12 0.00042 32.6 4.6 48 540-588 5-52 (100)
456 2k9y_A Ephrin type-A receptor 42.8 23 0.00079 25.0 3.5 7 716-722 19-25 (41)
457 1cja_A Protein (actin-fragmin 42.5 68 0.0023 34.5 8.5 136 782-927 75-237 (342)
458 2lz0_A Uncharacterized protein 39.3 58 0.002 28.2 6.3 46 446-492 7-52 (100)
459 1iij_A ERBB-2 receptor protein 38.5 11 0.00037 25.7 1.0 24 714-737 11-34 (35)
460 2l34_A TYRO protein tyrosine k 23.9 1E+02 0.0035 20.7 3.8 24 710-733 6-29 (33)
461 2jo1_A Phospholemman; FXYD1, N 23.8 1E+02 0.0035 24.4 4.3 8 713-720 18-25 (72)
462 3ox7_P MH027; urokinase-type p 23.0 25 0.00086 20.3 0.6 9 61-69 6-14 (23)
463 2l9u_A Receptor tyrosine-prote 22.8 77 0.0026 21.1 2.9 21 717-737 13-33 (40)
464 1zza_A Stannin, AG8_1; helix, 22.3 1.6E+02 0.0054 23.3 5.1 30 711-740 15-44 (90)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-90 Score=876.22 Aligned_cols=658 Identities=33% Similarity=0.513 Sum_probs=556.3
Q ss_pred cccchhHHHHHHHHHhhccCCCCCCCCCCCCCCCCcceeeEEecCCCcEEEEecccccccCc---CCccccccccCCeEe
Q 001238 28 PYAVNRQGEALLSWKRNWKGSDDGLSNWSPSDETPCKWFGVSCNLNNQVVGLDLRYVDLLGH---VPTNFTSLLSLNRLV 104 (1117)
Q Consensus 28 ~~~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~~~~C~W~gv~C~~~~~v~~l~l~~~~l~~~---~~~~~~~l~~L~~L~ 104 (1117)
..+.++|++|||+||+++.|+. .+++|.. +.+||.|+||+|+ +++|++++|++.++.|. +|+.|.++++|+.++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3456889999999999999877 8999984 4579999999999 89999999999999998 888888888888888
Q ss_pred ccCCCCCCCchhhhcccccCcEeeccCCCcCCCCch--hhhhhhhhhhhhccCCCcCCCCchhc-cCCcCCcEEeccCCC
Q 001238 105 LSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPR--ELCSLLRLEQLRLNSNQLEGAIPIQI-GNLSSLTQLFLYDNQ 181 (1117)
Q Consensus 105 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~-~~L~~L~~L~L~~N~ 181 (1117)
++.|.+. .+|..|+++++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ +++++|++|+|++|+
T Consensus 84 ~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 84 LSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp CTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 8877765 3567788888888888888888888887 88888888888888888888877766 788888888888888
Q ss_pred CCCCCccc---ccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeeccccccccc
Q 001238 182 LTDAIPAT---IGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQ 258 (1117)
Q Consensus 182 l~~~~p~~---~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~ 258 (1117)
+++..|.. +.++++|++|++++|+. .+..| ++++++|++|++++|.+.+.+|. ++++++|++|++++|.+.+.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKI-SGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEE-ESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcc-cccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 88877776 78888888888888864 33333 37788888888888888877776 88888888888888888888
Q ss_pred CCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCC-CCCCEEEcCCCcCCCCCccccCC
Q 001238 259 IPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNC-SQLSIIDISMNSLTGSIPQTLGN 337 (1117)
Q Consensus 259 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~~l~~ 337 (1117)
+|..+..+++|++|+|++|.+++.+|.. .+++|++|++++|++++.+|..+..+ ++|++|+|++|.+++.+|..|++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 8888888888888888888888777764 77888888888888888888877664 88888888888888888888888
Q ss_pred CCCcceEecccccccCccccc-ccCCCCCcEEEecCccccCCCCccccccc-chHHHHhccccccccCCCCCCc--cccc
Q 001238 338 LTSLQELQLSVNQISGEIPAQ-IGNCQRLAQIELDNNQITGAIPSEFGNLS-NLTLLFVWHNRLEGEIPPSISN--CQNL 413 (1117)
Q Consensus 338 l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~~L 413 (1117)
+++|++|+|++|.+++.+|.. +.++++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 888888888888888777765 78888888888888888888888888776 7888888888888877777766 7788
Q ss_pred ceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCC
Q 001238 414 EAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSN 493 (1117)
Q Consensus 414 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 493 (1117)
++|++++|++++.+|..+..+++|++|++++|++++.+|..|+++++|+.|++++|++++.+|..+..+++|++|+|++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 88888888888778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCc
Q 001238 494 RLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPS 573 (1117)
Q Consensus 494 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 573 (1117)
++++.+|..+..+++|++|+|++|++.+.+|.++..+++|++|++++|++.+..+..+..+++|+.|++++|++.|.+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 88888888888888888888888888888888888888888888888888877777888888888888888887766554
Q ss_pred c----------------------------------------------------------------------cccccceeE
Q 001238 574 Q----------------------------------------------------------------------LGSCVKLQL 583 (1117)
Q Consensus 574 ~----------------------------------------------------------------------~~~l~~L~~ 583 (1117)
. |..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 3 444678999
Q ss_pred EeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch-hhhcccceEEEeeccc
Q 001238 584 LDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF-LAELQNLVVLNVSHNN 662 (1117)
Q Consensus 584 L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~-l~~l~~L~~L~ls~N~ 662 (1117)
|||++|+++|.+|..++.++.+ +.|+|++|+++|.+|..|+++++|++||||+|+++|.+|. +..+++|++||||+|+
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L-~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYL-FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EECcCCcccccCCHHHhccccC-CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999999999999999999999 7999999999999999999999999999999999998876 8999999999999999
Q ss_pred ccCCCCCCcccccCCcccccCCCCCCcCC-CCCCC
Q 001238 663 FSGRVPDTPFFAKLPLSVLSGNPSLCFSG-NQCAD 696 (1117)
Q Consensus 663 l~~~~p~~~~~~~~~~~~~~gN~~~c~~~-~~c~~ 696 (1117)
|+|.||+.++|.+++..+|.|||++||.+ .+|..
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~ 750 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred ccccCCCchhhccCCHHHhcCCchhcCCCCcCCCC
Confidence 99999999999999999999999999984 47864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-72 Score=710.49 Aligned_cols=579 Identities=32% Similarity=0.508 Sum_probs=507.3
Q ss_pred ecccccccCc--CCccccccccCCeEeccCCCCCCCchh--hhcccccCcEeeccCCCcCCCCchhh-hhhhhhhhhhcc
Q 001238 80 DLRYVDLLGH--VPTNFTSLLSLNRLVLSGTNLTGSIPK--EIASLNQLNYLDLSENSLTGEIPREL-CSLLRLEQLRLN 154 (1117)
Q Consensus 80 ~l~~~~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~ 154 (1117)
++.+++..+. +|..|+.+++|++|+|++|+++|.+|. .++++++|++|||++|.+++.+|..+ ..+++|++|+|+
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 3333444443 447899999999999999999998988 89999999999999999988888776 789999999999
Q ss_pred CCCcCCCCchh---ccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccc
Q 001238 155 SNQLEGAIPIQ---IGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSI 231 (1117)
Q Consensus 155 ~N~l~~~~p~~---~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~ 231 (1117)
+|++++..|.. ++++++|++|++++|++++.+|. +.+++|++|++++|+. .+.+|. ++++++|++|++++|.+
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l-~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNF-STGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCC-CSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcC-CCCCcc-cccCCCCCEEECcCCcC
Confidence 99999888877 78899999999999999876664 8889999999998874 456666 88999999999999999
Q ss_pred cccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCC-CCCcEEEccCCcCcccCCcC
Q 001238 232 SGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNL-KNLVNLFLWQNNLVGIIPPE 310 (1117)
Q Consensus 232 ~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~ 310 (1117)
.+.+|..+..+++|++|++++|.+.+.+|.. .+++|++|+|++|++++.+|..+.++ ++|++|+|++|++++.+|..
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 9888889999999999999999988887775 88899999999999988888888775 89999999999999888888
Q ss_pred CCCCCCCCEEEcCCCcCCCCCccc-cCCCCCcceEecccccccCcccccccCCC-CCcEEEecCccccCCCCccccc--c
Q 001238 311 LGNCSQLSIIDISMNSLTGSIPQT-LGNLTSLQELQLSVNQISGEIPAQIGNCQ-RLAQIELDNNQITGAIPSEFGN--L 386 (1117)
Q Consensus 311 ~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~--l 386 (1117)
|+++++|++|+|++|.+++.+|.. +.++++|++|+|++|.+++.+|..+.+++ +|++|++++|++++.+|..+.. +
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 999999999999999998777765 88899999999999999888888888887 8999999999998888887776 7
Q ss_pred cchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceecc
Q 001238 387 SNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRA 466 (1117)
Q Consensus 387 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 466 (1117)
++|++|++++|++++.+|..+.++++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 88899999999998888888888889999999999988888888888889999999999998888888888899999999
Q ss_pred CCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCC
Q 001238 467 NSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGM 546 (1117)
Q Consensus 467 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 546 (1117)
++|++++.+|..+.++++|++|+|++|++++.+|.++..+++|++|+|++|++++.+|..+..+++|+.|++++|++.+.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 99999888888888889999999999999888888888899999999999999888888888889999999988887643
Q ss_pred CC----------------------------------------------------------------------CCcCCCcc
Q 001238 547 LS----------------------------------------------------------------------PDLGSLSS 556 (1117)
Q Consensus 547 ~~----------------------------------------------------------------------~~~~~l~~ 556 (1117)
.+ ..|..+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 22 23556788
Q ss_pred ccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEecc
Q 001238 557 LTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLS 636 (1117)
Q Consensus 557 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 636 (1117)
|+.|+|++|+++|.+|..|+.++.|+.|+|++|+++|.+|..++.++.| +.||||+|+++|.+|..+..+++|++||||
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL-NILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC-CEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 9999999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred CccccCCcchhhhcccceEEEeeccc-ccC
Q 001238 637 HNELSGDLHFLAELQNLVVLNVSHNN-FSG 665 (1117)
Q Consensus 637 ~N~l~~~~~~l~~l~~L~~L~ls~N~-l~~ 665 (1117)
+|+++|.+|....+..+....+.+|. |.|
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 99999999987777777777788885 555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.7e-63 Score=620.79 Aligned_cols=585 Identities=20% Similarity=0.193 Sum_probs=447.8
Q ss_pred EecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCc
Q 001238 79 LDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQL 158 (1117)
Q Consensus 79 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 158 (1117)
+|++++++. .+|..+. +++++|+|++|++++..+..|+++++|++|||++|.+++..|..++++++|++|+|++|.+
T Consensus 9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred eECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 344444553 3777665 7899999999999988888899999999999999999988899999999999999999999
Q ss_pred CCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcc
Q 001238 159 EGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPT 238 (1117)
Q Consensus 159 ~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 238 (1117)
++..+..|+++++|++|+|++|++++..|..|+++++|++|++++|+ +.+..|..++++++|++|++++|.+++..+..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 95555579999999999999999998778899999999999999997 45677888999999999999999999887776
Q ss_pred cc--cccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCC---CCCCCcEEEccCCcCcccCCcCCCC
Q 001238 239 LG--LLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLG---NLKNLVNLFLWQNNLVGIIPPELGN 313 (1117)
Q Consensus 239 l~--~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~~~~ 313 (1117)
+. .+++|+.|++++|.+.+..|..+..+++|+.|++.+|.+.+.....+. ..++|+.|++++|.+.+..|..|.+
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 65 458999999999999998899999999999999999887643322221 3478999999999999988888888
Q ss_pred CCC--CCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCC-----CCc----c
Q 001238 314 CSQ--LSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGA-----IPS----E 382 (1117)
Q Consensus 314 l~~--L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~p~----~ 382 (1117)
++. |++|+|++|++++..|..|+.+++|++|+|++|++++..|..|.++++|+.|++++|...+. +|. .
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 755 99999999999988888899999999999999999988888999999999999998765542 222 5
Q ss_pred cccccchHHHHhccccccccCCCCCCcccccceeecccccccCC-Cc-ccccC--CCCCCeeeccCccCCCCCCCCcccc
Q 001238 383 FGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGP-IP-RGIFQ--LKKLNKLLLLSNNLSGVIPPEMGNC 458 (1117)
Q Consensus 383 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p-~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l 458 (1117)
|..+++|++|++++|++++..+..|..+++|++|++++|.+... ++ ..+.. .++|+.|++++|++++..|..|..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 66777777777777777777777777777777777777765421 11 22222 2467777777777777777777777
Q ss_pred cccceeccCCCcccccCC-CCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccc--cccchhhhccccccc
Q 001238 459 SSLIRFRANSNKLTGFIP-PEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIA--GNLPAGLHQLVRLQF 535 (1117)
Q Consensus 459 ~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~ 535 (1117)
++|+.|++++|++++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 777777777777766544 56777777777777777777667777777777777777777765 456667777777777
Q ss_pred ccccCCcCCCCCCCCcCCCccccEEeccccccCCCCC--------cccccccceeEEeccccccccccccccCCchhHHH
Q 001238 536 ADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIP--------SQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAI 607 (1117)
Q Consensus 536 L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~ 607 (1117)
|++++|+|+++++..|.++++|+.|+|++|++++..+ ..|..+++|+.|+|++|+++...+..|..++++ +
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-~ 563 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-K 563 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-C
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc-c
Confidence 7777777777777777777777777777777764321 235666777777777777763323345666666 5
Q ss_pred hhcCCCCcccCCccccccCCCCccEEeccCccccCCcch-hh-hcccceEEEeecccccCCCC
Q 001238 608 ALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF-LA-ELQNLVVLNVSHNNFSGRVP 668 (1117)
Q Consensus 608 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~-l~-~l~~L~~L~ls~N~l~~~~p 668 (1117)
.|+|++|+|++..+..|..+++|+.|||++|++++.++. +. .+++|+.|++++|++.|..+
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 666666666655555666666666666666666665544 33 46666666666666665544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-62 Score=613.21 Aligned_cols=582 Identities=21% Similarity=0.211 Sum_probs=516.3
Q ss_pred cceeeEEecC----------CCcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCC
Q 001238 63 CKWFGVSCNL----------NNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSEN 132 (1117)
Q Consensus 63 C~W~gv~C~~----------~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 132 (1117)
|.++-|.|.. ..++..|+++++.+.+..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 6666777742 246889999999999877778999999999999999999999999999999999999999
Q ss_pred CcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCC
Q 001238 133 SLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLP 212 (1117)
Q Consensus 133 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp 212 (1117)
.+++..+..|+.+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..++++++|++|++++|+. .+..|
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCH
Confidence 99954445799999999999999999977778999999999999999999999999999999999999999974 44445
Q ss_pred cccc--ccccccccccccccccccCCcccccccccceeecccccccccCCcCC---CCCCCCcEEecCCCccCCcCCccC
Q 001238 213 HEIG--NCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPEL---GDCTELQYIYLYENALTGSIPSKL 287 (1117)
Q Consensus 213 ~~l~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l 287 (1117)
..++ .+++|+.|++++|.+.+..|..+..+.+|+.|++.++.+.+.....+ -..++|++|++++|.+++..|..|
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 5544 56899999999999999999999999999999999887654322211 134789999999999999999999
Q ss_pred CCCCC--CcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccC-----cccc---
Q 001238 288 GNLKN--LVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISG-----EIPA--- 357 (1117)
Q Consensus 288 ~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-----~~p~--- 357 (1117)
.+++. |++|+|++|++.+..|..|+.+++|++|+|++|.+++..|..|.++++|++|++++|...+ .+|.
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 98865 9999999999999989999999999999999999999999999999999999999886654 2333
Q ss_pred -cccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccc--cCCCCCCcc--cccceeecccccccCCCccccc
Q 001238 358 -QIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEG--EIPPSISNC--QNLEAVDLSQNGLTGPIPRGIF 432 (1117)
Q Consensus 358 -~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~ 432 (1117)
.|..+++|++|++++|++++..+..|.++++|++|++++|.++. .....|..+ ++|+.|++++|++++..|..+.
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 78899999999999999999999999999999999999998543 233344443 5899999999999988899999
Q ss_pred CCCCCCeeeccCccCCCCCC-CCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCC--CCCCcccccCCCC
Q 001238 433 QLKKLNKLLLLSNNLSGVIP-PEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLT--GSIPDEITGCRNL 509 (1117)
Q Consensus 433 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L 509 (1117)
.+++|+.|++++|++.+.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.++ +.+|..|..+++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 99999999999999987665 68999999999999999999999999999999999999999997 5789999999999
Q ss_pred ceEEccCCccccccchhhhcccccccccccCCcCCCCCC--------CCcCCCccccEEeccccccCCCCCcccccccce
Q 001238 510 TFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLS--------PDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKL 581 (1117)
Q Consensus 510 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 581 (1117)
++|+|++|+|++..+..|..+++|+.|++++|+++++.. ..|.++++|+.|+|++|+|+...+..|..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 999999999999888899999999999999999998743 347889999999999999997777789999999
Q ss_pred eEEeccccccccccccccCCchhHHHhhcCCCCcccCCcccccc-CCCCccEEeccCccccCCcch
Q 001238 582 QLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELT-GLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 582 ~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~-~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
+.|||++|++++..+..|..++++ +.|+|++|+|++..|..+. .+++|+.|+|++|++.|+++.
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSL-KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTC-CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCC-CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999996666667888998 8999999999999988888 899999999999999998764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-58 Score=568.38 Aligned_cols=536 Identities=20% Similarity=0.235 Sum_probs=326.5
Q ss_pred EecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCc
Q 001238 79 LDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQL 158 (1117)
Q Consensus 79 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 158 (1117)
+++++.++. .+|..+.. ++++|+|++|++++..|.+|+++++|++|||++|.+++..|..|.++++|++|+|++|++
T Consensus 17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 334444443 36666653 789999999999988889999999999999999999988899999999999999999999
Q ss_pred CCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcc
Q 001238 159 EGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPT 238 (1117)
Q Consensus 159 ~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 238 (1117)
++..|..|+++++|++|+|++|++++..|..++.+++|++|++++|+...-.+|..++ +++|+.|++++|.+.+..|..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhh
Confidence 9888999999999999999999999877888999999999999988754333444444 778888888888777777777
Q ss_pred cccccccc--eeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCccc-----CCcCC
Q 001238 239 LGLLKRLQ--TIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGI-----IPPEL 311 (1117)
Q Consensus 239 l~~l~~L~--~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~~ 311 (1117)
+..+++|+ .|++++|.+.+..|..+.. .+|++|++++|. .++..+..+.++....+.-+.+.+. .+..|
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHh
Confidence 77777777 6677777776655555443 567777777665 2333344444444333332222211 11112
Q ss_pred CCCC--CCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccch
Q 001238 312 GNCS--QLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNL 389 (1117)
Q Consensus 312 ~~l~--~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 389 (1117)
..+. +|+.|++++|.+++..+..|..+++|++|++++|+++ .+|..+.++++|++|++++|++++..|..+..+++|
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 2221 4555555555555444444555555555555555555 444455555555555555555554444445555555
Q ss_pred HHHHhccccccccCCC-CCCcccccceeecccccccCCC--cccccCCCCCCeeeccCccCCCCCCCCcccccccceecc
Q 001238 390 TLLFVWHNRLEGEIPP-SISNCQNLEAVDLSQNGLTGPI--PRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRA 466 (1117)
Q Consensus 390 ~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 466 (1117)
+.|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 5555555554433332 2444445555555555444322 333444444444444444444444444444444444444
Q ss_pred CCCcccccCCCC-cCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCC
Q 001238 467 NSNKLTGFIPPE-IGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGG 545 (1117)
Q Consensus 467 ~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 545 (1117)
++|++++..+.. |..+++|++|++++|++++..|..+..+++|++|++++|++.+...
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------- 466 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI--------------------- 466 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE---------------------
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc---------------------
Confidence 444444333222 4444444444444444444444444444444444444444432100
Q ss_pred CCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCcccccc
Q 001238 546 MLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELT 625 (1117)
Q Consensus 546 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~ 625 (1117)
.....+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++.+|..+..++.+ .|+|++|++++.+|..+.
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L--~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI--YLNLASNHISIILPSLLP 544 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC--EEECCSSCCCCCCGGGHH
T ss_pred ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc--EEECcCCcccccCHhhcc
Confidence 111334555566666666666665556666666666666666666666666666666665 566666666666666677
Q ss_pred CCCCccEEeccCccccCCcch
Q 001238 626 GLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 626 ~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
.+++|+.|||++|++.|+++.
T Consensus 545 ~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp HHHTSSEEECTTCCEECSGGG
T ss_pred cCCCCCEEeCCCCCccccCCc
Confidence 777777888888888777653
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.9e-58 Score=565.88 Aligned_cols=474 Identities=23% Similarity=0.286 Sum_probs=340.5
Q ss_pred chhHHHHHHHHHhhccCCCCC--------CCCCCCCCCCCcce---eeEEecCCCcEEEEecccccccCcCCcccccccc
Q 001238 31 VNRQGEALLSWKRNWKGSDDG--------LSNWSPSDETPCKW---FGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLS 99 (1117)
Q Consensus 31 ~~~~~~aLl~~k~~~~~~~~~--------l~sW~~~~~~~C~W---~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~ 99 (1117)
...|++||.+||+++.++.+. .++|..+ .+||.| +||+|+..+||++|+|+++++.|.+|+.|+.|++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCcc
Confidence 346999999999997666443 3479854 679999 9999998899999999999999999999999999
Q ss_pred CCeEeccCCCC------CC------CchhhhcccccCcEeeccCCCcCCCCchhhhh-hhhhhhhhcc------------
Q 001238 100 LNRLVLSGTNL------TG------SIPKEIASLNQLNYLDLSENSLTGEIPRELCS-LLRLEQLRLN------------ 154 (1117)
Q Consensus 100 L~~L~L~~n~l------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~------------ 154 (1117)
|+.|+|++|++ .| .+|.+. +..|+ ++++.|.+.+.+|..+.. +..+..+++.
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred ceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999976 34 677766 77888 999999999999988874 4566666666
Q ss_pred --------CCCcCCCCchhccCCcCCcEEeccCCCCCCC-----------------Cccccc--CcccchhhhccCCCCC
Q 001238 155 --------SNQLEGAIPIQIGNLSSLTQLFLYDNQLTDA-----------------IPATIG--KLKNLEAIRAGGNKNL 207 (1117)
Q Consensus 155 --------~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~~~ 207 (1117)
.|+++| +|..|+++++|++|+|++|++++. +|+.++ ++++|++|++++|+ +
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l 261 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-N 261 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-T
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-C
Confidence 678887 888888889999999999888875 777777 78888888887775 4
Q ss_pred CCCCCcccccccccccccccccc-ccc-cCCcccccc------cccceeecccccccccCCc--CCCCCCCCcEEecCCC
Q 001238 208 GGSLPHEIGNCTNLVMIGLAETS-ISG-FLPPTLGLL------KRLQTIAIYTALLSGQIPP--ELGDCTELQYIYLYEN 277 (1117)
Q Consensus 208 ~~~lp~~l~~l~~L~~L~l~~~~-~~~-~lp~~l~~l------~~L~~L~l~~~~l~~~~p~--~l~~l~~L~~L~L~~n 277 (1117)
.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.+. .+|. .++.+++|++|+|++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 46777777777777777777777 776 677777665 77777777777776 6666 6777777777777777
Q ss_pred ccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCC-CCEEEcCCCcCCCCCccccCCCC--CcceEecccccccCc
Q 001238 278 ALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQ-LSIIDISMNSLTGSIPQTLGNLT--SLQELQLSVNQISGE 354 (1117)
Q Consensus 278 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~LdLs~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~ 354 (1117)
+++|.+| .|+++++|++|+|++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++.
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 7777777 6777777777777777777 66666777777 777777777777 5666665544 677777777777777
Q ss_pred cccccc-------CCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCC-Ccc-------cccceeecc
Q 001238 355 IPAQIG-------NCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSI-SNC-------QNLEAVDLS 419 (1117)
Q Consensus 355 ~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l-------~~L~~L~Ls 419 (1117)
+|..|. .+.+|++|++++|+++...+..+..+++|+.|+|++|+++ .+|..+ ... ++|+.|+|+
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence 776666 6667777777777777433334455677777777777776 444332 222 266667777
Q ss_pred cccccCCCccccc--CCCCCCeeeccCccCCCCCCCCcccccccceeccC------CCcccccCCCCcCCCCCCCEEEcc
Q 001238 420 QNGLTGPIPRGIF--QLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRAN------SNKLTGFIPPEIGNLKNLNFLDLG 491 (1117)
Q Consensus 420 ~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~------~N~l~~~~~~~~~~l~~L~~L~Ls 491 (1117)
+|+++ .+|..++ .+++|++|+|++|+|++ +|..+.++++|+.|+++ +|++.+.+|..|.++++|++|+|+
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 77666 4666665 66666666666666665 56666666666666663 344555555555555555555555
Q ss_pred CCcCCCCCCcccccCCCCceEEccCCccc
Q 001238 492 SNRLTGSIPDEITGCRNLTFLDVHSNSIA 520 (1117)
Q Consensus 492 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 520 (1117)
+|+++ .+|..+. ++|++|+|++|++.
T Consensus 575 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 575 SNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred CCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 55552 4444433 45555555555544
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-56 Score=572.21 Aligned_cols=525 Identities=22% Similarity=0.234 Sum_probs=353.2
Q ss_pred EecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCC-chhhhhhhhhhhhhccCCC
Q 001238 79 LDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEI-PRELCSLLRLEQLRLNSNQ 157 (1117)
Q Consensus 79 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~ 157 (1117)
+|++++++.. +|. ..++|++|+|++|++++..|.+|.++++|++|||++|.+.+.+ |..|.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 3455666654 665 3478999999999999888999999999999999999776666 7889999999999999999
Q ss_pred cCCCCchhccCCcCCcEEeccCCCCCCCCccc--ccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccC
Q 001238 158 LEGAIPIQIGNLSSLTQLFLYDNQLTDAIPAT--IGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFL 235 (1117)
Q Consensus 158 l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~l 235 (1117)
+++..|..|+++++|++|+|++|++++.+|.. |+++++|++|++++|+......+..++++++|++|++++|.+.+..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 99888999999999999999999999877765 9999999999999998654445568899999999999999999988
Q ss_pred Ccccccc--cccceeecccccccccCCcCCCCCCC------CcEEecCCCccCCcCCccCCCC---CCCcEEEccCCc--
Q 001238 236 PPTLGLL--KRLQTIAIYTALLSGQIPPELGDCTE------LQYIYLYENALTGSIPSKLGNL---KNLVNLFLWQNN-- 302 (1117)
Q Consensus 236 p~~l~~l--~~L~~L~l~~~~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~-- 302 (1117)
|..+..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++..|..+... .+++.|.+..+.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 8888888 88999999999998888888777766 8999999998888777766543 567777776333
Q ss_pred -------CcccCCcCCCCC--CCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCc
Q 001238 303 -------LVGIIPPELGNC--SQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNN 373 (1117)
Q Consensus 303 -------l~~~~p~~~~~l--~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 373 (1117)
+.+..+..|..+ ++|+.|+|++|.+.+..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 222223334333 45666666666666555556666666666666666666555556666666666666666
Q ss_pred cccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCC
Q 001238 374 QITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPP 453 (1117)
Q Consensus 374 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 453 (1117)
++++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|.+++ ++ .+++|+.|++++|+++.. |.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l-~~ 398 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTL-PK 398 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCC-CC
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcccc-cc
Confidence 6665555556666666666666666655555555555566666666665552 21 144555555555555422 22
Q ss_pred CcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCC-cccccCCCCceEEccCCccccccch-hhhccc
Q 001238 454 EMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIP-DEITGCRNLTFLDVHSNSIAGNLPA-GLHQLV 531 (1117)
Q Consensus 454 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~ 531 (1117)
. .. +++.|++++|++++... ..+..+++|++|+|++|++++..+. .+..++
T Consensus 399 ~---~~------------------------~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 399 I---NL------------------------TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp C---CT------------------------TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred c---cc------------------------ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence 1 23 44445555555543211 1223445555555555555433222 233344
Q ss_pred ccccccccCCcCCC-----CCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHH
Q 001238 532 RLQFADLSDNSVGG-----MLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALA 606 (1117)
Q Consensus 532 ~L~~L~Ls~N~i~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~ 606 (1117)
+|+.|++++|.++. ..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..|..+. +++
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L- 528 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL- 528 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC-
T ss_pred ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccc-
Confidence 55555555555542 2234556666666666666666666666666666777777777766654444332 333
Q ss_pred HhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch
Q 001238 607 IALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 607 ~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
+.|+|++|+|++.+|..| .+|+.|+|++|++.|+++.
T Consensus 529 ~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 529 EILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred cEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 455555555555555544 3567788888888876653
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.6e-57 Score=556.97 Aligned_cols=534 Identities=19% Similarity=0.181 Sum_probs=418.5
Q ss_pred CeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCC
Q 001238 101 NRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDN 180 (1117)
Q Consensus 101 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N 180 (1117)
+.++.++.+++ .+|..+.. .+++|||++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 36788888888 78877764 7999999999999877889999999999999999999888999999999999999999
Q ss_pred CCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCC
Q 001238 181 QLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIP 260 (1117)
Q Consensus 181 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p 260 (1117)
++++..|..|+.+++|++|++++|+ +++..|..+.++++|++|++++|.+.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~-------------------------i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 146 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTG-------------------------ISSIDFIPLHNQKTLESLYLGSNHISSIKL 146 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSC-------------------------CSCGGGSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred cccccChhhhcccccccEeeccccC-------------------------cccCCcchhccCCcccEEECCCCcccccCc
Confidence 9988777777777777777766664 333334445556666666666666655443
Q ss_pred cCCCCCCCCcEEecCCCccCCcCCccCCCCCCCc--EEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCC
Q 001238 261 PELGDCTELQYIYLYENALTGSIPSKLGNLKNLV--NLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNL 338 (1117)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 338 (1117)
+.+..+++|++|++++|.+++..|..|+.+++|+ +|++++|.+.+..|..|.. .+|+.|++++|. .++..+..+
T Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l 222 (606)
T 3t6q_A 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGL 222 (606)
T ss_dssp CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHT
T ss_pred ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhc
Confidence 4444578888888888888877777788888888 7888888888766666544 578888888876 234444444
Q ss_pred CCcceEeccccccc-----CcccccccCCC--CCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCccc
Q 001238 339 TSLQELQLSVNQIS-----GEIPAQIGNCQ--RLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQ 411 (1117)
Q Consensus 339 ~~L~~L~Ls~N~l~-----~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 411 (1117)
.++....+..+.+. ...+..|..+. +|+.|++++|.+++..+..|+.+++|++|++++|+++ .+|..+..++
T Consensus 223 ~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~ 301 (606)
T 3t6q_A 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS 301 (606)
T ss_dssp TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT
T ss_pred cccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccc
Confidence 44433333322221 12233333333 6888888888888877777888888888888888888 6777888888
Q ss_pred ccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCC-CcccccccceeccCCCcccccC--CCCcCCCCCCCEE
Q 001238 412 NLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPP-EMGNCSSLIRFRANSNKLTGFI--PPEIGNLKNLNFL 488 (1117)
Q Consensus 412 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L 488 (1117)
+|++|++++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+..+++|++|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 888888888888877777888888888888888888865554 4888888888888888888765 7778888889999
Q ss_pred EccCCcCCCCCCcccccCCCCceEEccCCccccccch-hhhcccccccccccCCcCCCCCCCCcCCCccccEEecccccc
Q 001238 489 DLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPA-GLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRF 567 (1117)
Q Consensus 489 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l 567 (1117)
++++|++++..|..|..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..+..|..+++|++|++++|++
T Consensus 382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 9999888888888888888899999999888876554 488888888888888888888888888888899999999888
Q ss_pred CC---CCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCc
Q 001238 568 AG---SIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDL 644 (1117)
Q Consensus 568 ~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~ 644 (1117)
.+ ..+..+..+++|+.|++++|++++.+|..+..++.+ +.|+|++|++++..|..+..+++| .|||++|++++.+
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CccccccchhhccCCCccEEECCCCccCccChhhhccccCC-CEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 76 233568888889999999999888888888888888 788888888888888888888888 8888888888876
Q ss_pred ch-hhhcccceEEEeecccccCCCCC
Q 001238 645 HF-LAELQNLVVLNVSHNNFSGRVPD 669 (1117)
Q Consensus 645 ~~-l~~l~~L~~L~ls~N~l~~~~p~ 669 (1117)
+. +..+++|+.|++++|+++|..+.
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HhhcccCCCCCEEeCCCCCccccCCc
Confidence 65 77888888888888888876654
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-56 Score=568.75 Aligned_cols=526 Identities=22% Similarity=0.227 Sum_probs=406.5
Q ss_pred eEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCC-chhccCCcCCcEEeccCC
Q 001238 102 RLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAI-PIQIGNLSSLTQLFLYDN 180 (1117)
Q Consensus 102 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~L~~L~~L~L~~N 180 (1117)
..+.++++++ .+|. -.++|++|||++|.+++..|..|.++++|++|+|++|.+.+.+ |..|++|++|++|+|++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 5678889998 6776 5689999999999999888999999999999999999777677 788999999999999999
Q ss_pred CCCCCCcccccCcccchhhhccCCCCCCCCCCcc--ccccccccccccccccccccCC-cccccccccceeecccccccc
Q 001238 181 QLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHE--IGNCTNLVMIGLAETSISGFLP-PTLGLLKRLQTIAIYTALLSG 257 (1117)
Q Consensus 181 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~l~~~~l~~ 257 (1117)
++++..|..|+++++|++|++++|.. .+.+|.. ++++++|++|++++|.+.+..+ ..++++++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~------------- 149 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGL-SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS------------- 149 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCC-SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-------------
T ss_pred cCcccCHhHccCCcccCEeeCcCCCC-CcccccCccccccCCCCEEECCCCcccccccchhHhhCCC-------------
Confidence 99988888899888888888888863 3444443 6666666666666666655433 34444444
Q ss_pred cCCcCCCCCCCCcEEecCCCccCCcCCccCCCC--CCCcEEEccCCcCcccCCcCCCCCCC------CCEEEcCCCcCCC
Q 001238 258 QIPPELGDCTELQYIYLYENALTGSIPSKLGNL--KNLVNLFLWQNNLVGIIPPELGNCSQ------LSIIDISMNSLTG 329 (1117)
Q Consensus 258 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L~~LdLs~N~l~~ 329 (1117)
|++|+|++|.+++..|..+..+ ++|+.|++++|.+.+..|..++.+.+ |+.|++++|.+++
T Consensus 150 -----------L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 150 -----------LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp -----------CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred -----------CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 4455555555444444444444 44555555555555444444444333 5555555555555
Q ss_pred CCccccCCC---CCcceEecc---------cccccCcccccccCC--CCCcEEEecCccccCCCCcccccccchHHHHhc
Q 001238 330 SIPQTLGNL---TSLQELQLS---------VNQISGEIPAQIGNC--QRLAQIELDNNQITGAIPSEFGNLSNLTLLFVW 395 (1117)
Q Consensus 330 ~~p~~l~~l---~~L~~L~Ls---------~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 395 (1117)
.++..+... ++++.|.++ .|.+.+.....|.++ ++|+.|++++|.+.+..|..|..+++|+.|+|+
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 544444322 345555544 334444444555554 678999999999988888888899999999999
Q ss_pred cccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccC
Q 001238 396 HNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFI 475 (1117)
Q Consensus 396 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 475 (1117)
+|++++..|..|..+++|++|+|++|++++..|..+..+++|++|++++|++.+..+..|.++++|++|++++|.+++.
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i- 377 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI- 377 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-
Confidence 9999988888899999999999999999887788899999999999999999988888899999999999999999843
Q ss_pred CCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccc-hhhhcccccccccccCCcCCCCCCC-CcCC
Q 001238 476 PPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLP-AGLHQLVRLQFADLSDNSVGGMLSP-DLGS 553 (1117)
Q Consensus 476 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~ 553 (1117)
..+++|+.|++++|+++ .+|.. ..+++.|++++|++++... ..+..+++|+.|++++|+++++... .+..
T Consensus 378 ----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 378 ----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred ----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 33789999999999998 45543 4678999999999997533 3456889999999999999987654 5667
Q ss_pred CccccEEeccccccC-----CCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCC
Q 001238 554 LSSLTKLVLNKNRFA-----GSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLN 628 (1117)
Q Consensus 554 l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~ 628 (1117)
+++|+.|+|++|.++ +..+..|..+++|+.|+|++|+|++.+|..+..+++| +.|+|++|+|++..|..+. +
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-RGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-SEEEEESCCCSSCCCCCCC--S
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-heeECCCCCCCccChhhhh--c
Confidence 899999999999997 4556778899999999999999998888888899998 7899999999987777776 8
Q ss_pred CccEEeccCccccCCcchhhhcccceEEEeecccccCCCCCC
Q 001238 629 KLGILDLSHNELSGDLHFLAELQNLVVLNVSHNNFSGRVPDT 670 (1117)
Q Consensus 629 ~L~~LdLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~ 670 (1117)
+|+.|||++|+|++.++.. +.+|+.|++++|++.|..+..
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred cccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 8999999999999877652 457899999999998877643
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-56 Score=554.52 Aligned_cols=530 Identities=20% Similarity=0.197 Sum_probs=344.9
Q ss_pred EEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCC
Q 001238 78 GLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQ 157 (1117)
Q Consensus 78 ~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 157 (1117)
.+++++.++. .+|..+. +++++|+|++|++++..|..|+++++|++|||++|.+++..|..|.++++|++|+|++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 3455555554 3677665 789999999999998888899999999999999999998788899999999999999999
Q ss_pred cCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCc
Q 001238 158 LEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPP 237 (1117)
Q Consensus 158 l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~ 237 (1117)
+++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|+.....+|..++++++|++|++++|.+.+..|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 99888999999999999999999999888789999999999999999876667899999999999999999999988888
Q ss_pred ccccccccc----eeecccccccccCCcCCCCCCCCcEEecCCCccC-CcCCccCCCCCCCcEEEccCCcCcccC-----
Q 001238 238 TLGLLKRLQ----TIAIYTALLSGQIPPELGDCTELQYIYLYENALT-GSIPSKLGNLKNLVNLFLWQNNLVGII----- 307 (1117)
Q Consensus 238 ~l~~l~~L~----~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~----- 307 (1117)
.+..+++|+ +|++++|.+.+..+..+... +|++|++++|.++ +.+|..+.++++|+.+++..+.+.+..
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 888887766 68888887776555555444 7888888888776 356667777777877777655443210
Q ss_pred -CcCCCCCC--CCCEEEc-CCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCccc
Q 001238 308 -PPELGNCS--QLSIIDI-SMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEF 383 (1117)
Q Consensus 308 -p~~~~~l~--~L~~LdL-s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 383 (1117)
+..+..+. +++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~ 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC
T ss_pred ChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC
Confidence 01111111 2334444 44455544444 555555555555555554 233 455555555555555555 3444 22
Q ss_pred ccccchHHHHhccccccccCCCCCCcccccceeecccccccCC--CcccccCCCCCCeeeccCccCCCCCCCCccccccc
Q 001238 384 GNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGP--IPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSL 461 (1117)
Q Consensus 384 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 461 (1117)
.+++|+.|++++|+..+.+ .+..+++|++|++++|++++. +|..+..+++|++|++++|.+++ +|..
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~------- 394 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSAN------- 394 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCC-------
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhh-------
Confidence 4555555555555333222 334455555555555555432 24444444555555555555443 2344
Q ss_pred ceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCC-cccccCCCCceEEccCCccccccchhhhcccccccccccC
Q 001238 462 IRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIP-DEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSD 540 (1117)
Q Consensus 462 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 540 (1117)
|..+++|+.|++++|++.+..| ..+..+++|++|++++|.+.+..|..|..+++|+.|++++
T Consensus 395 -----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 395 -----------------FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp -----------------CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred -----------------ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 4444455555555554444443 3444445555555555555444444444555555555555
Q ss_pred CcCCC-CCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCC
Q 001238 541 NSVGG-MLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGE 619 (1117)
Q Consensus 541 N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~ 619 (1117)
|++++ +.+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++.+|..+..++++ +.|+|++|+|+ .
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~l~~N~l~-~ 535 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL-STLDCSFNRIE-T 535 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC-CEEECTTSCCC-C
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC-CEEECCCCcCc-c
Confidence 55444 234455555666666666666665556666666666666666666665555555555555 45555555555 4
Q ss_pred ccccccCCC-CccEEeccCccccCCcch
Q 001238 620 LPAELTGLN-KLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 620 ~p~~l~~l~-~L~~LdLs~N~l~~~~~~ 646 (1117)
+|..+..++ +|+.|++++|++.|+++.
T Consensus 536 ~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 536 SKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 555566665 488888888888876654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-56 Score=563.40 Aligned_cols=497 Identities=21% Similarity=0.255 Sum_probs=337.3
Q ss_pred ccchhHHHHHHHHHhhccCCCCCCCCCCCCC----CCC--cce------------eeEEecCCCcEEEEecccccccCcC
Q 001238 29 YAVNRQGEALLSWKRNWKGSDDGLSNWSPSD----ETP--CKW------------FGVSCNLNNQVVGLDLRYVDLLGHV 90 (1117)
Q Consensus 29 ~~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~----~~~--C~W------------~gv~C~~~~~v~~l~l~~~~l~~~~ 90 (1117)
++...|++||++||+++.++ +|+.++ .+| |.| .||+|+..+||++|+|+++++.|.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 34567999999999999765 786543 344 999 9999998899999999999999999
Q ss_pred CccccccccCCeEec-cCCCCCCCchhhhccc---------ccCcEee------c-cCCCcCCCC-----------chhh
Q 001238 91 PTNFTSLLSLNRLVL-SGTNLTGSIPKEIASL---------NQLNYLD------L-SENSLTGEI-----------PREL 142 (1117)
Q Consensus 91 ~~~~~~l~~L~~L~L-~~n~l~~~~p~~~~~l---------~~L~~L~------L-s~N~l~~~~-----------p~~~ 142 (1117)
|+.|++|++|+.|+| ++|.++|..|-..... ..++... . ....+++.+ +...
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 8898887744321111 0000000 0 000000000 0000
Q ss_pred hhhhhhhhhhccC--CCcCCCCchhccCCcCCcEEeccCCCCCC-----------------CCccccc--Ccccchhhhc
Q 001238 143 CSLLRLEQLRLNS--NQLEGAIPIQIGNLSSLTQLFLYDNQLTD-----------------AIPATIG--KLKNLEAIRA 201 (1117)
Q Consensus 143 ~~l~~L~~L~L~~--N~l~~~~p~~~~~L~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~l 201 (1117)
.....++.+.++. |.+++ +|..|++|++|++|+|++|++++ .+|+.++ ++++|++|++
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 1112233333333 56665 66666666666666666666665 2666655 6666666666
Q ss_pred cCCCCCCCCCCcccccccccccccccccc-ccc-cCCccccccc-------ccceeecccccccccCCc--CCCCCCCCc
Q 001238 202 GGNKNLGGSLPHEIGNCTNLVMIGLAETS-ISG-FLPPTLGLLK-------RLQTIAIYTALLSGQIPP--ELGDCTELQ 270 (1117)
Q Consensus 202 ~~n~~~~~~lp~~l~~l~~L~~L~l~~~~-~~~-~lp~~l~~l~-------~L~~L~l~~~~l~~~~p~--~l~~l~~L~ 270 (1117)
++|+ +.+.+|..++++++|+.|++++|. +++ .+|..++.++ +|+.|++++|.+. .+|. .++.+++|+
T Consensus 499 s~N~-l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 499 YNCP-NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp ESCT-TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred cCCC-CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 6664 345666666666666666666665 665 5666555555 7777777777776 6676 777777777
Q ss_pred EEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCC-CCEEEcCCCcCCCCCccccCCCCC--cceEecc
Q 001238 271 YIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQ-LSIIDISMNSLTGSIPQTLGNLTS--LQELQLS 347 (1117)
Q Consensus 271 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~LdLs~N~l~~~~p~~l~~l~~--L~~L~Ls 347 (1117)
+|+|++|+++ .+| .|+++++|+.|+|++|++. .+|..+.++++ |+.|+|++|.++ .+|..+..++. |+.|+|+
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 7777777777 666 6777777777777777777 66777777777 777777777777 56666666543 7777777
Q ss_pred cccccCcccccc---c--CCCCCcEEEecCccccCCCCcc-cccccchHHHHhccccccccCCCCCC--------ccccc
Q 001238 348 VNQISGEIPAQI---G--NCQRLAQIELDNNQITGAIPSE-FGNLSNLTLLFVWHNRLEGEIPPSIS--------NCQNL 413 (1117)
Q Consensus 348 ~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~--------~l~~L 413 (1117)
+|++++.+|... . .+.+|+.|+|++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+. ++++|
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCc
Confidence 777776555322 2 2346777777777777 34443 346777777777777777 4444332 33489
Q ss_pred ceeecccccccCCCccccc--CCCCCCeeeccCccCCCCCCCCcccccccceeccCC------CcccccCCCCcCCCCCC
Q 001238 414 EAVDLSQNGLTGPIPRGIF--QLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANS------NKLTGFIPPEIGNLKNL 485 (1117)
Q Consensus 414 ~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~------N~l~~~~~~~~~~l~~L 485 (1117)
+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.|++++ |++.+.+|..|.++++|
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L 808 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCC
Confidence 99999999998 6888887 88899999999999987 688888888888888876 66666777777777777
Q ss_pred CEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCC
Q 001238 486 NFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVG 544 (1117)
Q Consensus 486 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 544 (1117)
+.|+|++|+| +.+|..+. ++|+.|+|++|++....+..+.....+..+.|.+|++.
T Consensus 809 ~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 809 IQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 7777777777 45666554 46777777777776666666665555555666665543
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-56 Score=550.27 Aligned_cols=532 Identities=19% Similarity=0.211 Sum_probs=430.9
Q ss_pred CeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCC
Q 001238 101 NRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDN 180 (1117)
Q Consensus 101 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N 180 (1117)
+.++.++++++ .+|..+. ++|++|||++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 46888999998 7887665 78999999999999777778999999999999999999777888999999999999999
Q ss_pred CCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccc-cC
Q 001238 181 QLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSG-QI 259 (1117)
Q Consensus 181 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~ 259 (1117)
++++..|..|+++++|++|++++|+ +.+..+..++++++|++|++++|.+.+ .+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~-------------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l 145 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETK-------------------------LASLESFPIGQLITLKKLNVAHNFIHSCKL 145 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSC-------------------------CCCSSSSCCTTCTTCCEEECCSSCCCCCCC
T ss_pred cccccChhhcCCcccCCEEEccCCc-------------------------cccccccccCCCCCCCEEeCCCCcccceec
Confidence 9988777777777777777776665 333333444555555555555555544 45
Q ss_pred CcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCc----EEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCC-CCCccc
Q 001238 260 PPELGDCTELQYIYLYENALTGSIPSKLGNLKNLV----NLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLT-GSIPQT 334 (1117)
Q Consensus 260 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~ 334 (1117)
|..++++++|++|+|++|++++..|..|+.+++|+ +|++++|.+++..+..+... +|+.|++++|.++ +.+|..
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~ 224 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTC 224 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHH
Confidence 66777777777777777777776666666665544 67777777776555555444 7778888877776 345666
Q ss_pred cCCCCCcceEecccccccC------cccccccCCC--CCcEEEe-cCccccCCCCcccccccchHHHHhccccccccCCC
Q 001238 335 LGNLTSLQELQLSVNQISG------EIPAQIGNCQ--RLAQIEL-DNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPP 405 (1117)
Q Consensus 335 l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~--~L~~L~L-~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 405 (1117)
+.++++|+.+++..+.+.+ ..+..+..+. +++.+++ ..|.+.+.+|. |..+++|+.|++++|.+. .+|
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~- 301 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE- 301 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-
T ss_pred hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-
Confidence 7777777777776555432 1122222222 4566777 77788888777 888999999999999987 455
Q ss_pred CCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCccccc--CCCCcCCCC
Q 001238 406 SISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGF--IPPEIGNLK 483 (1117)
Q Consensus 406 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~ 483 (1117)
.+..+++|++|++++|.+ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|++++. .|..+..++
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 788899999999999999 4788 44 8999999999999665443 677899999999999999876 378889999
Q ss_pred CCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccc-hhhhcccccccccccCCcCCCCCCCCcCCCccccEEec
Q 001238 484 NLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLP-AGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVL 562 (1117)
Q Consensus 484 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 562 (1117)
+|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..|..+++|+.|++++|.+.+..+..|..+++|+.|++
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 99999999999985 66889999999999999999998877 68999999999999999999999999999999999999
Q ss_pred cccccCC-CCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCcccc
Q 001238 563 NKNRFAG-SIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELS 641 (1117)
Q Consensus 563 ~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 641 (1117)
++|++.+ .+|..|..+++|+.|+|++|++++.+|..+..++++ +.|+|++|++++.+|..|..+++|+.|||++|+++
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL-QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC-CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 9999997 478899999999999999999999889999999999 79999999999999999999999999999999999
Q ss_pred CCcchhhhcc-cceEEEeecccccCCCCCCc
Q 001238 642 GDLHFLAELQ-NLVVLNVSHNNFSGRVPDTP 671 (1117)
Q Consensus 642 ~~~~~l~~l~-~L~~L~ls~N~l~~~~p~~~ 671 (1117)
..++.+..++ +|+.|++++|++.|..+...
T Consensus 535 ~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 535 TSKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred ccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 7666688887 59999999999998777543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-50 Score=497.19 Aligned_cols=515 Identities=20% Similarity=0.227 Sum_probs=367.2
Q ss_pred EecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCc
Q 001238 79 LDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQL 158 (1117)
Q Consensus 79 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 158 (1117)
+++.+.++.. +|..+. .+++.|+|++|++++..+.+|+++++|++|||++|++++..|..|.++++|++|+|++|++
T Consensus 12 ~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 3444444432 555544 4678888888888876677788888888888888888766667778888888888888888
Q ss_pred CCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcc
Q 001238 159 EGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPT 238 (1117)
Q Consensus 159 ~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~ 238 (1117)
++..|..|+++++|++|++++|++++..+..|+++++|++|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n---------------------------------- 134 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN---------------------------------- 134 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS----------------------------------
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC----------------------------------
Confidence 7666677888888888888888776533323333333333333333
Q ss_pred cccccccceeecccccccc-cCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCC----cEEEccCCcCcccCCcCCCC
Q 001238 239 LGLLKRLQTIAIYTALLSG-QIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNL----VNLFLWQNNLVGIIPPELGN 313 (1117)
Q Consensus 239 l~~l~~L~~L~l~~~~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~p~~~~~ 313 (1117)
.+.+ .+|..|+++++|++|++++|++++..|..++.+++| +.|++++|.+.+..|..|..
T Consensus 135 ---------------~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 135 ---------------LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp ---------------CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred ---------------ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence 2222 245556666777777777777776666666666666 66777777777666666655
Q ss_pred CCCCCEEEcCCCcCCC-CCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCccccccc--chH
Q 001238 314 CSQLSIIDISMNSLTG-SIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLS--NLT 390 (1117)
Q Consensus 314 l~~L~~LdLs~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~ 390 (1117)
+ +|+.|++++|.... .++..+..+++++.+.+..+.+.. ... +.......|..+. .++
T Consensus 200 ~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~----------l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGN----------LEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp C-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSS----------CEECCTTTTGGGGGSEEE
T ss_pred C-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chh----------hhhcchhhhccccccchh
Confidence 4 57777776664432 234445556666555554433221 001 1111112222222 245
Q ss_pred HHHhccc-cccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCC
Q 001238 391 LLFVWHN-RLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSN 469 (1117)
Q Consensus 391 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 469 (1117)
.+++.+| .+.+..+..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence 5556666 566667777777788888888888877 477777777 8888888888877 3343 46778888888888
Q ss_pred cccccCCCCcCCCCCCCEEEccCCcCCCCC--CcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCC
Q 001238 470 KLTGFIPPEIGNLKNLNFLDLGSNRLTGSI--PDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGML 547 (1117)
Q Consensus 470 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 547 (1117)
.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|.+.+..+. +..+++|+.|++++|.+.++.
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 87766554 67888888888888887543 67788888888888888888866555 888888888888888888775
Q ss_pred C-CCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccc-cccccccCCchhHHHhhcCCCCcccCCcccccc
Q 001238 548 S-PDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLS-GNIPASLGKIPALAIALNLSWNQICGELPAELT 625 (1117)
Q Consensus 548 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~ 625 (1117)
+ ..|..+++|+.|++++|.+.+..|..|..+++|+.|+|++|+++ +.+|..+..++++ +.|+|++|++++..|..|.
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTT
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-CEEECCCCccccCChhhhh
Confidence 5 57888889999999999998888888888999999999999987 5788888888888 7899999999988888999
Q ss_pred CCCCccEEeccCccccCCcch-hhhcccceEEEeecccccCCCCCCccc
Q 001238 626 GLNKLGILDLSHNELSGDLHF-LAELQNLVVLNVSHNNFSGRVPDTPFF 673 (1117)
Q Consensus 626 ~l~~L~~LdLs~N~l~~~~~~-l~~l~~L~~L~ls~N~l~~~~p~~~~~ 673 (1117)
.+++|+.|+|++|++++.++. +..+++|+.|++++|+++|.+|...++
T Consensus 492 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999999987665 788899999999999999988875543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-50 Score=498.11 Aligned_cols=490 Identities=21% Similarity=0.210 Sum_probs=363.6
Q ss_pred CcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhc
Q 001238 74 NQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRL 153 (1117)
Q Consensus 74 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 153 (1117)
..+..++++++.+.+..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+.+++|++|+|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46889999999998877888999999999999999999877888999999999999999999777789999999999999
Q ss_pred cCCCcCCCCchhccCCcCCcEEeccCCCCCC-CCcccccCcccchhhhccCCCCCCCCCCccccccccc----ccccccc
Q 001238 154 NSNQLEGAIPIQIGNLSSLTQLFLYDNQLTD-AIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNL----VMIGLAE 228 (1117)
Q Consensus 154 ~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L----~~L~l~~ 228 (1117)
++|++++..+..|+++++|++|++++|++++ .+|..|+++++|++|++++|+. .+..|..++.+++| +.+++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCC
Confidence 9999996666679999999999999999987 4688888888877777777753 33344455555555 4455555
Q ss_pred ccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccC-CcCCccCCCCCCCcEEEccCCcC----
Q 001238 229 TSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALT-GSIPSKLGNLKNLVNLFLWQNNL---- 303 (1117)
Q Consensus 229 ~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l---- 303 (1117)
|.+.+..|..+..+ +|++|++++|... ..++..+..+++++.+.+..+.+
T Consensus 187 n~l~~~~~~~~~~~-------------------------~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-------------------------RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp CCCCEECTTTTTTC-------------------------EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred CCceecCHHHhccC-------------------------cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 55554444444333 4455555444222 12233344444444443322211
Q ss_pred --cccCCcCCCCCC--CCCEEEcCCC-cCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCC
Q 001238 304 --VGIIPPELGNCS--QLSIIDISMN-SLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGA 378 (1117)
Q Consensus 304 --~~~~p~~~~~l~--~L~~LdLs~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 378 (1117)
.......+..+. +++.+++++| .+.+.+|..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~ 318 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-Q 318 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-S
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-c
Confidence 111112222222 2455566665 556666666667777777777777776 466666666 7777777777776 4
Q ss_pred CCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCC--cccccCCCCCCeeeccCccCCCCCCCCcc
Q 001238 379 IPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPI--PRGIFQLKKLNKLLLLSNNLSGVIPPEMG 456 (1117)
Q Consensus 379 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 456 (1117)
+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|++.+..+. +.
T Consensus 319 l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 393 (570)
T 2z63_A 319 FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL 393 (570)
T ss_dssp CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE
T ss_pred cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc
Confidence 443 3566777777777777655544 66778888888888887543 56677888888888888888865554 88
Q ss_pred cccccceeccCCCcccccCC-CCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccc-cccchhhhcccccc
Q 001238 457 NCSSLIRFRANSNKLTGFIP-PEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIA-GNLPAGLHQLVRLQ 534 (1117)
Q Consensus 457 ~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 534 (1117)
.+++|++|++++|++++..+ ..+.++++|++|++++|++++..|..|.++++|++|++++|.+. +.+|..|..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 88888888888888887665 46788888888999888888888888888888999999988887 56788888888888
Q ss_pred cccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecccccccccccc
Q 001238 535 FADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPA 597 (1117)
Q Consensus 535 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 597 (1117)
.|++++|+++++.+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+++..|.
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 888888888888888888888899999999998888888888889999999999998877663
No 15
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.5e-50 Score=452.40 Aligned_cols=263 Identities=25% Similarity=0.417 Sum_probs=208.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC------CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP------SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|.+.++||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+.+..|+
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 35677789999999999999853 478999999987766667789999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCC------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcc
Q 001238 850 FYDYMPNGTLGMLLHDGEC------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYES 917 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~ 917 (1117)
|||||++|+|.++++.... .+.++|.++++|+.|||+||+|||++ +||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcE
Confidence 9999999999999976431 24589999999999999999999999 99999999999999999999
Q ss_pred eeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHH
Q 001238 918 CLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWV 996 (1117)
Q Consensus 918 kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~ 996 (1117)
||+|||+|+...... .........||++|||||++.+..|+.++|||||||++|||+| |+.||... ...+.+
T Consensus 198 Ki~DFGla~~~~~~~--~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~-----~~~~~~ 270 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTD--YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL-----SNTEAI 270 (329)
T ss_dssp EECCCC------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS-----CHHHHH
T ss_pred EEcccccceeccCCC--cceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC-----CHHHHH
Confidence 999999998765432 1223345689999999999999999999999999999999999 99999653 122222
Q ss_pred HHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 997 RDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 997 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
....... . +..+...+..+.+++. .||+.||++|||++||++.|+.+.+.++
T Consensus 271 ~~i~~g~-~------~~~p~~~~~~~~~li~------~cl~~dP~~RPs~~ei~~~L~~l~~~pp 322 (329)
T 4aoj_A 271 DCITQGR-E------LERPRACPPEVYAIMR------GCWQREPQQRHSIKDVHARLQALAQAPP 322 (329)
T ss_dssp HHHHHTC-C------CCCCTTCCHHHHHHHH------HHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred HHHHcCC-C------CCCcccccHHHHHHHH------HHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence 2222221 1 1223334445555554 4999999999999999999999977543
No 16
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=1.2e-50 Score=448.57 Aligned_cols=261 Identities=24% Similarity=0.380 Sum_probs=212.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC------CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP------SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|.+.+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 46788899999999999999753 478899999987666667789999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCC----------CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCccee
Q 001238 850 FYDYMPNGTLGMLLHDGE----------CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCL 919 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl 919 (1117)
|||||++|+|.++++... ....++|.++.+++.|||+||+|||++ +||||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEE
Confidence 999999999999997532 234599999999999999999999999 9999999999999999999999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
+|||+|+...... .........||++|||||++.+..|+.++|||||||++|||+| |+.||.+. ...+.+..
T Consensus 170 ~DFGla~~~~~~~--~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~-----~~~~~~~~ 242 (299)
T 4asz_A 170 GDFGMSRDVYSTD--YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL-----SNNEVIEC 242 (299)
T ss_dssp CCCSCHHHHTGGG--CEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHH
T ss_pred CCcccceecCCCC--ceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC-----CHHHHHHH
Confidence 9999998765422 1223345679999999999999999999999999999999998 99999753 12223333
Q ss_pred HHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 999 HLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 999 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
...... +..+...+..+.+++. .||+.||++|||+++|.+.|+++.+.
T Consensus 243 i~~~~~-------~~~p~~~~~~~~~li~------~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 243 ITQGRV-------LQRPRTCPQEVYELML------GCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHTCC-------CCCCTTCCHHHHHHHH------HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHcCCC-------CCCCccchHHHHHHHH------HHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 222221 1123334445555554 49999999999999999999988653
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-50 Score=495.65 Aligned_cols=493 Identities=19% Similarity=0.217 Sum_probs=339.2
Q ss_pred CcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchh
Q 001238 62 PCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRE 141 (1117)
Q Consensus 62 ~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 141 (1117)
.|.|.|| |+.. ++++. .+|..+. ++|++|+|++|++++..|.+|+++++|++|+|++|++++..|..
T Consensus 3 ~C~~~~~-c~~~---------~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 3 SCDASGV-CDGR---------SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp EECTTSE-EECT---------TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCce-EECC---------CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 4999998 9643 23333 4676654 68889999999998777888889999999999999988777788
Q ss_pred hhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCC-CCcccccCcccchhhhccCCCCCCCCCCcccccccc
Q 001238 142 LCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTD-AIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTN 220 (1117)
Q Consensus 142 ~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~ 220 (1117)
|+.+++|++|+|++|++++..|..|+++++|++|+|++|++++ .+|..++++++|++|++++|
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n---------------- 133 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV---------------- 133 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES----------------
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC----------------
Confidence 8888888888888888887777778888888888888888875 23344444444443333333
Q ss_pred ccccccccccccccCCcccccccccceeecccccccccC-CcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEcc
Q 001238 221 LVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQI-PPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLW 299 (1117)
Q Consensus 221 L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 299 (1117)
...+.+ +..+..+++|++|++++|++++..|..++++++|++|+++
T Consensus 134 ---------------------------------~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 134 ---------------------------------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp ---------------------------------SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred ---------------------------------ccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 211223 3467788888999999999988888888888899999998
Q ss_pred CCcCcccCCcCCCCCCCCCEEEcCCCcCCCCC--c-cccCCCCCcceEecccccccCccc----ccccCCCCCcEEEecC
Q 001238 300 QNNLVGIIPPELGNCSQLSIIDISMNSLTGSI--P-QTLGNLTSLQELQLSVNQISGEIP----AQIGNCQRLAQIELDN 372 (1117)
Q Consensus 300 ~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~--p-~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~ 372 (1117)
.|.+.......+..+++|++|++++|++++.. | .....+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 88876332223356888888999988888642 2 223456788888888888876443 3345677888888888
Q ss_pred ccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCC-----CcccccCCCCCCeeeccCccC
Q 001238 373 NQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGP-----IPRGIFQLKKLNKLLLLSNNL 447 (1117)
Q Consensus 373 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l 447 (1117)
|.+.+... +.. .....+..+.+|+.|++.++.+... ++..+....+|++|++++|++
T Consensus 261 ~~~~~~~~--~~~----------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l 322 (549)
T 2z81_A 261 CTLNGLGD--FNP----------------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV 322 (549)
T ss_dssp CEEECCSC--CCC----------------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC
T ss_pred cccccccc--ccc----------------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc
Confidence 88775321 000 0112234455666666666655421 111222345677777777777
Q ss_pred CCCCCCCc-ccccccceeccCCCcccccCC---CCcCCCCCCCEEEccCCcCCCCCC--cccccCCCCceEEccCCcccc
Q 001238 448 SGVIPPEM-GNCSSLIRFRANSNKLTGFIP---PEIGNLKNLNFLDLGSNRLTGSIP--DEITGCRNLTFLDVHSNSIAG 521 (1117)
Q Consensus 448 ~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~ 521 (1117)
. .+|..+ .++++|++|++++|++++.+| ..++.+++|++|+|++|++++..+ ..+..+++|++|++++|+|+
T Consensus 323 ~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 323 F-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp C-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred c-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence 6 344443 467777777777777776543 346677777777777777775432 44677777777777777777
Q ss_pred ccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCC
Q 001238 522 NLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGK 601 (1117)
Q Consensus 522 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 601 (1117)
.+|..+..+++|++|++++|+|+.++...+ ++|+.|+|++|+|++.+ ..+++|+.|+|++|+|+ .+|. ...
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~---~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~ 471 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASL 471 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSCCCTTSC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGG
T ss_pred cCChhhcccccccEEECCCCCcccccchhc---CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-ccc
Confidence 456666777777777777777776544322 46778888888877542 45777888888888887 6665 345
Q ss_pred chhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch
Q 001238 602 IPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 602 l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
++.+ +.|+|++|+|++.+|..|..+++|+.|||++|++.|+++.
T Consensus 472 l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 472 FPVL-LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CTTC-CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred CccC-CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 5665 6677777777777777777777777777777777777664
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-50 Score=501.89 Aligned_cols=510 Identities=19% Similarity=0.272 Sum_probs=327.0
Q ss_pred CcccchhHHHHHHHHHhhccCCCCCCCCCCCCCC---CCcceeeEE--ecCC--CcEEEEecccccccCcCCcccccccc
Q 001238 27 TPYAVNRQGEALLSWKRNWKGSDDGLSNWSPSDE---TPCKWFGVS--CNLN--NQVVGLDLRYVDLLGHVPTNFTSLLS 99 (1117)
Q Consensus 27 ~~~~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~~---~~C~W~gv~--C~~~--~~v~~l~l~~~~l~~~~~~~~~~l~~ 99 (1117)
+......+...-.++++-+..-.+ .+|...++ ..|.|..-+ |... ..|++ ... .+
T Consensus 21 ~~~~~~~~~~d~~aL~~~~~~~~~--~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C---~~~-------------~~ 82 (636)
T 4eco_A 21 KLSRTAEYIKDYLALKEIWDALNG--KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSL---NSN-------------GR 82 (636)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTG--GGCCCCC------CCCCCSSCGGGTTCCTTEEE---CTT-------------CC
T ss_pred echhhhhHHHHHHHHHHHHHHcCC--CCcccCCcCCccCCCCCCCCCcccccCCCCeEE---cCC-------------CC
Confidence 333445566677788877764333 47874332 125796322 3331 12332 110 35
Q ss_pred CCeEeccCCCCCCCchhhhcccccCcEeeccCCCc------CC------CCchhhhhhhhhhhhhccCCCcCCCCchhcc
Q 001238 100 LNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSL------TG------EIPRELCSLLRLEQLRLNSNQLEGAIPIQIG 167 (1117)
Q Consensus 100 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l------~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 167 (1117)
++.|+|++|+++|.+|++|++|++|++|||++|.+ .| .+|.+. +..|+ ++++.|.+.+.+|..++
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence 78899999999999999999999999999999977 34 566655 77888 99999999998888776
Q ss_pred C-CcCCcEEeccCCCCCCCCcccccCcccchhhhccC-CCCCCCCCCcccccccccccccccccccccc-----------
Q 001238 168 N-LSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGG-NKNLGGSLPHEIGNCTNLVMIGLAETSISGF----------- 234 (1117)
Q Consensus 168 ~-L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~----------- 234 (1117)
. +..+..+++....+.. .....++.+.++. ++.+++ +|.+++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 232 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232 (636)
T ss_dssp HHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred HHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccccc
Confidence 4 3344444444433321 2223344444443 223444 666677777777777777776664
Q ss_pred ------CCcccc--cccccceeecccccccccCCcCCCCCCCCcEEecCCCc-cCC-cCCccCCCC------CCCcEEEc
Q 001238 235 ------LPPTLG--LLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENA-LTG-SIPSKLGNL------KNLVNLFL 298 (1117)
Q Consensus 235 ------lp~~l~--~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L 298 (1117)
+|+.++ ++++|++|++++|.+.+.+|+.|+++++|++|+|++|+ ++| .+|..++++ ++|++|++
T Consensus 233 ~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L 312 (636)
T 4eco_A 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312 (636)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEEC
T ss_pred chhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEEC
Confidence 666666 67777777777777666777777777777777777776 666 666666655 67777777
Q ss_pred cCCcCcccCCc--CCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCC-CcEEEecCccc
Q 001238 299 WQNNLVGIIPP--ELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQR-LAQIELDNNQI 375 (1117)
Q Consensus 299 ~~n~l~~~~p~--~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l 375 (1117)
++|+++ .+|. .++++++|++|+|++|+++|.+| .++.+++|++|+|++|+++ .+|..+.++++ |++|++++|++
T Consensus 313 ~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 313 GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 777776 5666 66667777777777777766666 6666667777777777766 66666666666 77777777776
Q ss_pred cCCCCccccccc--chHHHHhccccccccCCCCCC-------cccccceeecccccccCCCccccc-CCCCCCeeeccCc
Q 001238 376 TGAIPSEFGNLS--NLTLLFVWHNRLEGEIPPSIS-------NCQNLEAVDLSQNGLTGPIPRGIF-QLKKLNKLLLLSN 445 (1117)
Q Consensus 376 ~~~~p~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N 445 (1117)
+ .+|..+..++ +|+.|++++|++++.+|..+. .+++|++|+|++|+++ .+|..++ .+++|++|+|++|
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence 6 5566655543 666667777766666666666 5566667777777666 3444433 4666666677666
Q ss_pred cCCCCCCCCccccc-------ccceeccCCCcccccCCCCcC--CCCCCCEEEccCCcCCCCCCcccccCCCCceEEccC
Q 001238 446 NLSGVIPPEMGNCS-------SLIRFRANSNKLTGFIPPEIG--NLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHS 516 (1117)
Q Consensus 446 ~l~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 516 (1117)
+++.+.+..+.... +|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|++|+|++
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCS
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCC
Confidence 66633333333222 5666666666666 4455554 56666666666666664 555666666666666644
Q ss_pred CccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccc
Q 001238 517 NSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLS 592 (1117)
Q Consensus 517 N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1117)
|+ ++++|++.+..+..|..+++|+.|+|++|+| +.+|..+. ++|+.|||++|+++
T Consensus 546 N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 546 QR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred Cc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 33 2355666666666777777777777777777 45565554 67888888888776
No 19
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.3e-49 Score=442.33 Aligned_cols=257 Identities=24% Similarity=0.332 Sum_probs=207.4
Q ss_pred CCCCCCeeeecCCeEEEEEEcC------CCcEEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 777 SLTAGNIIGQGRSGIVYKVTLP------SGLTVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++++.++||+|+||+||+|.+. +++.||||+++.. .....++|.+|++++++++|||||+++|+|.+++..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 4566789999999999999852 4688999999754 33345789999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc
Q 001238 850 FYDYMPNGTLGMLLHDGEC-------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE 916 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~ 916 (1117)
|||||++|+|.+++..... ...++|.++.+|+.|||+||+|||++ +||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCC
Confidence 9999999999999965321 23589999999999999999999999 9999999999999999999
Q ss_pred ceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHH
Q 001238 917 SCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQW 995 (1117)
Q Consensus 917 ~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~ 995 (1117)
+||+|||+|+...... .........||++|||||++.++.|+.++|||||||++|||+| |+.||.+. . ..+.
T Consensus 184 ~Ki~DFGlar~~~~~~--~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~--~---~~~~ 256 (308)
T 4gt4_A 184 VKISDLGLFREVYAAD--YYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY--S---NQDV 256 (308)
T ss_dssp EEECCSCCBCGGGGGG--CBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC--C---HHHH
T ss_pred EEECCcccceeccCCC--ceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC--C---HHHH
Confidence 9999999998765422 1223445689999999999999999999999999999999998 89999753 1 2222
Q ss_pred HHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhh
Q 001238 996 VRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREI 1056 (1117)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~ 1056 (1117)
+....... .+ ..+...+..+.+++. .||+.||++||+|+||++.|+.+
T Consensus 257 ~~~i~~~~-~~------~~p~~~~~~~~~li~------~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 257 VEMIRNRQ-VL------PCPDDCPAWVYALMI------ECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHTTC-CC------CCCTTCCHHHHHHHH------HHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHcCC-CC------CCcccchHHHHHHHH------HHcCCChhHCcCHHHHHHHHHhc
Confidence 22222221 11 122333444554444 49999999999999999999875
No 20
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-49 Score=438.06 Aligned_cols=260 Identities=30% Similarity=0.411 Sum_probs=201.5
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
+++++.++||+|+||+||+|++.+ .||||+++... ....++|.+|++++++++|||||++++++.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 467888999999999999999743 69999987543 3345679999999999999999999998865 568999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
|++|+|.++++... +.+++.++.+|+.|||+||+|||++ +||||||||+|||+++++.+||+|||+|+.......
T Consensus 113 ~~gGsL~~~l~~~~--~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 113 CEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred CCCCCHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 99999999997643 3599999999999999999999999 999999999999999999999999999987654221
Q ss_pred CccccCCccccccccCChhhhcc---CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANM---TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.......+||+.|||||++.. ..|+.++|||||||++|||+||+.||.+... ...+...+........
T Consensus 188 --~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~-----~~~~~~~~~~~~~~p~-- 258 (307)
T 3omv_A 188 --SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-----RDQIIFMVGRGYASPD-- 258 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-----HHHHHHHHHTTCCCCC--
T ss_pred --ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh-----HHHHHHHHhcCCCCCC--
Confidence 123345689999999999864 4589999999999999999999999964211 1122222222211111
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
.+......+..+.+++. .||+.||++||||.||++.|+.++.
T Consensus 259 ~~~~~~~~~~~l~~li~------~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 259 LSKLYKNCPKAMKRLVA------DCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp STTSCTTSCHHHHHHHH------HHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHH------HHcCCCHhHCcCHHHHHHHHHHHhc
Confidence 11223333445555544 4999999999999999999998864
No 21
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=2e-49 Score=444.33 Aligned_cols=250 Identities=23% Similarity=0.331 Sum_probs=203.4
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
++|++.+.||+|+||+||+|++ .+|+.||||++.... ....+++.+|++++++++|||||++++++.+++..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 4799999999999999999985 569999999997543 2335679999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
||+||+|.+++.... ...+++.+++.++.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+.....
T Consensus 104 y~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~- 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST- 178 (350)
T ss_dssp CCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-
T ss_pred CCCCCcHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCC-
Confidence 999999999997643 23478999999999999999999999 9999999999999999999999999999876431
Q ss_pred CCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+. ...+.+..+......
T Consensus 179 ---~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~~~~i~~~~~~------- 243 (350)
T 4b9d_A 179 ---VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG-----SMKNLVLKIISGSFP------- 243 (350)
T ss_dssp ---HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHTCCC-------
T ss_pred ---cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHcCCCC-------
Confidence 12234568999999999999999999999999999999999999999642 333444444443321
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..+...+..+.+++.. |++.||++|||+.|+++
T Consensus 244 ~~~~~~s~~~~~li~~------~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 244 PVSLHYSYDLRSLVSQ------LFKRNPRDRPSVNSILE 276 (350)
T ss_dssp CCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHT
T ss_pred CCCccCCHHHHHHHHH------HccCChhHCcCHHHHhc
Confidence 2233445566666665 99999999999999976
No 22
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=9e-49 Score=438.33 Aligned_cols=249 Identities=21% Similarity=0.330 Sum_probs=207.5
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
..|++.++||+|+||+||+|.+ .+|+.||||++........+.+.+|++++++++|||||++++++.+++..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 4688889999999999999985 469999999998766666778999999999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
+||+|.+++... .+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+....
T Consensus 154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~-- 224 (346)
T 4fih_A 154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV-- 224 (346)
T ss_dssp TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--
T ss_pred CCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCC--
Confidence 999999999753 389999999999999999999999 99999999999999999999999999999875432
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCccc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKL 1014 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1014 (1117)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+. ...+.+........... ..
T Consensus 225 --~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~i~~~~~~~~-----~~ 292 (346)
T 4fih_A 225 --PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPLKAMKMIRDNLPPRL-----KN 292 (346)
T ss_dssp --CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSSCCCC-----SC
T ss_pred --CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHcCCCCCC-----Cc
Confidence 2345678999999999999999999999999999999999999999642 22223333222211110 01
Q ss_pred CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1015 QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1015 ~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
....+....+++.. |++.||++|||+.|+++
T Consensus 293 ~~~~s~~~~dli~~------~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 293 LHKVSPSLKGFLDR------LLVRDPAQRATAAELLK 323 (346)
T ss_dssp GGGSCHHHHHHHHH------HSCSSTTTSCCHHHHTT
T ss_pred cccCCHHHHHHHHH------HcCCChhHCcCHHHHhc
Confidence 11233455555555 99999999999999876
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-48 Score=483.22 Aligned_cols=560 Identities=22% Similarity=0.218 Sum_probs=346.0
Q ss_pred cCCCCCCCCCCCCCCCCcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCc
Q 001238 46 KGSDDGLSNWSPSDETPCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLN 125 (1117)
Q Consensus 46 ~~~~~~l~sW~~~~~~~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 125 (1117)
.|+.+.+++|..+ -|..|....|...+. .+++++.+|.. +|..+. +++++|+|++|+|++..|.+|.++++|+
T Consensus 7 ~~~~~~~~~~~~~--~p~~~~~c~~~~~~~--~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~ 79 (635)
T 4g8a_A 7 KDDDDKLAAANSS--IPESWEPCVEVVPNI--TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQ 79 (635)
T ss_dssp --------------------CCSEEEETTT--EEECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCcchhhcccCC--CCCCCCCccccCCCC--EEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCC
Confidence 4556668888743 345565544433332 34666667654 787765 5799999999999976678899999999
Q ss_pred EeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCC
Q 001238 126 YLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNK 205 (1117)
Q Consensus 126 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~ 205 (1117)
+|||++|+|++..|..|.+|++|++|+|++|++++..|..|++|++|++|+|++|++++..+..|+++++|++|++++|+
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence 99999999997677789999999999999999997667789999999999999999998777789999999999999998
Q ss_pred CCCCCCCccccccccccccccccccccccCCcccccccccc----eeecccccccccCCcCCCCCCCCcEEecCCCccCC
Q 001238 206 NLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQ----TIAIYTALLSGQIPPELGDCTELQYIYLYENALTG 281 (1117)
Q Consensus 206 ~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~----~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 281 (1117)
.....+|..++++++|++|++++|.+.+..|..+..+.+++ .++++.|.+....+..+ ....++.+++.+|....
T Consensus 160 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSH
T ss_pred cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccc
Confidence 76667889999999999999999999988888888777665 45566666655443333 34456677777775543
Q ss_pred c-CCccCCCCCCCcEEEccCCcC------cccCCcCCCCCCCCCEEEcCCCcCCCC---CccccCCCCCcceEecccccc
Q 001238 282 S-IPSKLGNLKNLVNLFLWQNNL------VGIIPPELGNCSQLSIIDISMNSLTGS---IPQTLGNLTSLQELQLSVNQI 351 (1117)
Q Consensus 282 ~-~p~~l~~l~~L~~L~L~~n~l------~~~~p~~~~~l~~L~~LdLs~N~l~~~---~p~~l~~l~~L~~L~Ls~N~l 351 (1117)
. .+..+..+..++...+..+.. .......+..+..+..+++..+..... ++..+..+.+++.+++.+|.+
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence 2 233456666666655543322 222233344455555555544433321 222344455666666666666
Q ss_pred cCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccC--CCcc
Q 001238 352 SGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTG--PIPR 429 (1117)
Q Consensus 352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~ 429 (1117)
.... .+.....|+.|++.+|.+.+..+. .+..|+.+++..|.+... .....+++|+.|++++|.+.. ..+.
T Consensus 319 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 319 ERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp EECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhcccccccccccc
Confidence 5322 244455666666666666644332 234455555666655432 223355666666666666542 2344
Q ss_pred cccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCC-CCcCCCCCCCEEEccCCcCCCCCCcccccCCC
Q 001238 430 GIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIP-PEIGNLKNLNFLDLGSNRLTGSIPDEITGCRN 508 (1117)
Q Consensus 430 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 508 (1117)
.+..+.+|+.+++..|.+.. .+..+..+++|+.+++..|++....+ ..|.++++++.+++++|++.+..+..+..++.
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred chhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh
Confidence 44455566666666665553 23445555556666655555443332 23555555555555555555555555555555
Q ss_pred CceEEccCCccc-cccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecc
Q 001238 509 LTFLDVHSNSIA-GNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLS 587 (1117)
Q Consensus 509 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 587 (1117)
|+.|+|++|.+. +..|..|..+++|++ |+|++|+|++..|..|..+++|+.|+|+
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~------------------------L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTF------------------------LDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCE------------------------EECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccCchhhhhccccCE------------------------EECCCCccCCcChHHHcCCCCCCEEECC
Confidence 555555555432 234444444444444 4444444444444445555555555555
Q ss_pred ccccccccccccCCchhHHHhhcCCCCcccCCccccccCC-CCccEEeccCccccCCcch
Q 001238 588 SNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGL-NKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 588 ~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l-~~L~~LdLs~N~l~~~~~~ 646 (1117)
+|+|++..|..|..+++| +.|+|++|+|++..|..|..+ ++|++|||++|+++|++..
T Consensus 527 ~N~l~~l~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSL-QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TSCCCBCCCGGGTTCTTC-CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCcCCCCChhHHhCCCCC-CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 555554444444444444 445555555555566666666 5799999999999998764
No 24
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.9e-48 Score=434.44 Aligned_cols=260 Identities=23% Similarity=0.311 Sum_probs=208.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.+.|++.++||+|+||+||+|++ .+|+.||||+++.... ..+|++++++++|||||++++++.+++..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 35678888999999999999985 4699999999975432 34799999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC-cceeccccccccccCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY-ESCLADFGLARLVEDDS 932 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~-~~kl~DfGla~~~~~~~ 932 (1117)
|+||+|.++++.. +.+++.++..++.||+.||+|||++ +||||||||+|||++.++ ++||+|||+|+......
T Consensus 132 ~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred cCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence 9999999999764 3499999999999999999999999 999999999999999987 69999999999875432
Q ss_pred CCc-cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 933 GGS-FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 933 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
... .......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+..... +.. ...... .+.
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~--~~~---~i~~~~-~~~---- 275 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP--LCL---KIASEP-PPI---- 275 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC--CHH---HHHHSC-CGG----
T ss_pred cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH--HHH---HHHcCC-CCc----
Confidence 211 122345689999999999999999999999999999999999999997643321 222 222221 111
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
+.++...+..+.+++.. |++.||++|||+.|+++.+....+...
T Consensus 276 ~~~~~~~s~~~~~li~~------~L~~dP~~R~sa~el~~~l~~~l~~~~ 319 (336)
T 4g3f_A 276 REIPPSCAPLTAQAIQE------GLRKEPVHRASAMELRRKVGKALQEVG 319 (336)
T ss_dssp GGSCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred hhcCccCCHHHHHHHHH------HccCCHhHCcCHHHHHHHHHHHHhhhh
Confidence 12334445566666665 999999999999999999887765543
No 25
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.6e-48 Score=434.94 Aligned_cols=272 Identities=27% Similarity=0.354 Sum_probs=202.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCC----ceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRK----TKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~----~~~lv~ 851 (1117)
++|.+.++||+|+||+||+|++ +|+.||||+++.... ....+++|+..+.+++|||||++++++.+++ ..|+||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4577889999999999999998 689999999975432 1223445666677899999999999998654 579999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC-----CCceeeeccccCeEEEcCCCcceeccccccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDC-----VPAILHRDVKSHNILLGERYESCLADFGLAR 926 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivHrDlkp~Nill~~~~~~kl~DfGla~ 926 (1117)
|||++|+|.++++.. .++|+.+.+++.|+++||+|||+++ .++||||||||+|||++.++++||+|||+|+
T Consensus 81 Ey~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp ECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred cCCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence 999999999999764 3899999999999999999999862 4589999999999999999999999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhccC------CCCcCCCeeehhhhHHHHHhCCCCCCCCC----------CCCh
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYANMT------KISEKSDVYSYGVVLLEIITGKKPVDASF----------PDGQ 990 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~vl~ell~g~~P~~~~~----------~~~~ 990 (1117)
................+||++|||||++.+. .|+.++|||||||++|||+||++||.... +...
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccc
Confidence 8765432222233456899999999998754 47789999999999999999988764321 1112
Q ss_pred hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
............. .+|.++..... ........+++..||+.||++||||.||++.|+++.++.
T Consensus 237 ~~~~~~~~~~~~~------~rp~~p~~~~~-~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~ 299 (303)
T 3hmm_A 237 SVEEMRKVVCEQK------LRPNIPNRWQS-CEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp CHHHHHHHHTTSC------CCCCCCGGGGS-SHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHhccc------CCCCCCccccc-hHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHc
Confidence 2222222222221 22232222111 011112234677799999999999999999999987653
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-48 Score=490.58 Aligned_cols=463 Identities=19% Similarity=0.230 Sum_probs=357.8
Q ss_pred ccCCeEeccCCCCCCCchhhhcccccCcEeec-cCCCcCCCCchhhh---------hhhhhhhhhcc-------CCCcCC
Q 001238 98 LSLNRLVLSGTNLTGSIPKEIASLNQLNYLDL-SENSLTGEIPRELC---------SLLRLEQLRLN-------SNQLEG 160 (1117)
Q Consensus 98 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~---------~l~~L~~L~L~-------~N~l~~ 160 (1117)
.+++.|+|++|+++|.+|++|++|++|++||| ++|.++|..|-... .+..++...+. ...+.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46789999999999999999999999999999 99999877442211 11112111110 001111
Q ss_pred -----------CCchhccCCcCCcEEeccC--CCCCCCCcccccCcccchhhhccCCCCCCC-----------------C
Q 001238 161 -----------AIPIQIGNLSSLTQLFLYD--NQLTDAIPATIGKLKNLEAIRAGGNKNLGG-----------------S 210 (1117)
Q Consensus 161 -----------~~p~~~~~L~~L~~L~L~~--N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-----------------~ 210 (1117)
..+........++.+.+.. |++++ +|..|+++++|++|+|++|+ +.+ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCc-CCCCccccccccccccccccc
Confidence 1111223334455555654 89998 99999999999999999998 455 4
Q ss_pred CCcccc--ccccccccccccccccccCCcccccccccceeeccccc-ccc-cCCcCCCCC-------CCCcEEecCCCcc
Q 001238 211 LPHEIG--NCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTAL-LSG-QIPPELGDC-------TELQYIYLYENAL 279 (1117)
Q Consensus 211 lp~~l~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~-l~~-~~p~~l~~l-------~~L~~L~L~~n~l 279 (1117)
+|..++ ++++|++|++++|.+.+.+|..++++++|+.|++++|. +++ .+|..++.+ ++|++|+|++|++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 999988 99999999999999999999999999999999999998 888 888765554 5999999999999
Q ss_pred CCcCCc--cCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCC-cceEecccccccCccc
Q 001238 280 TGSIPS--KLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTS-LQELQLSVNQISGEIP 356 (1117)
Q Consensus 280 ~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p 356 (1117)
+ .+|. .|+++++|++|+|++|+++ .+| .|+.+++|+.|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 9 8998 9999999999999999999 788 9999999999999999999 88989999999 999999999999 788
Q ss_pred ccccCCCC--CcEEEecCccccCCCCccc---c--cccchHHHHhccccccccCCCCC-CcccccceeecccccccCCCc
Q 001238 357 AQIGNCQR--LAQIELDNNQITGAIPSEF---G--NLSNLTLLFVWHNRLEGEIPPSI-SNCQNLEAVDLSQNGLTGPIP 428 (1117)
Q Consensus 357 ~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p 428 (1117)
..+..+.. |+.|++++|++++.+|... . .+++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|+|+ .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 88887764 9999999999998776432 2 3458999999999999 555544 58899999999999999 677
Q ss_pred ccccCCC--------CCCeeeccCccCCCCCCCCcc--cccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCC
Q 001238 429 RGIFQLK--------KLNKLLLLSNNLSGVIPPEMG--NCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGS 498 (1117)
Q Consensus 429 ~~~~~l~--------~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 498 (1117)
..++... +|+.|+|++|+|+ .+|..+. .+++|+.|++++|+|++ +|..+.++++|+.|+|++|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---- 787 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---- 787 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----
Confidence 7766533 9999999999999 6788876 89999999999999997 68889999999999998744
Q ss_pred CCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccc
Q 001238 499 IPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSC 578 (1117)
Q Consensus 499 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 578 (1117)
++++|++.+.+|..|..+++|+.|+|++|+|+.++.. +. ++|+.|+|++|++....+..|...
T Consensus 788 --------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 788 --------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK-LT--PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp --------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred --------------CcccccccccChHHHhcCCCCCEEECCCCCCCccCHh-hc--CCCCEEECCCCCCCccChHHcccc
Confidence 3334444444444444444444444444444333322 11 355555555555554444555555
Q ss_pred cceeEEeccccccc
Q 001238 579 VKLQLLDLSSNQLS 592 (1117)
Q Consensus 579 ~~L~~L~Ls~N~l~ 592 (1117)
..+..+.|++|++.
T Consensus 851 ~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 851 IEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHTTCCEEECCTTS
T ss_pred ccchheeecCCCcc
Confidence 55555555555554
No 27
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.9e-48 Score=429.07 Aligned_cols=249 Identities=20% Similarity=0.306 Sum_probs=208.9
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||+||+|+. .+|+.||||++.+. +....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4689999999999999999975 57999999999753 2334567999999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
|||+||+|.+++... +.+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 999999999999764 3499999999999999999999999 9999999999999999999999999999987543
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
.. .......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+. ...+.+........
T Consensus 186 ~~--~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~i~~~~~------- 251 (311)
T 4aw0_A 186 SK--QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG-----NEGLIFAKIIKLEY------- 251 (311)
T ss_dssp TT--CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCC-------
T ss_pred CC--cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCCC-------
Confidence 22 12345678999999999999999999999999999999999999999642 23334444444332
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.++...+...+++++. |++.||++||+++|+..
T Consensus 252 -~~p~~~s~~~~dli~~------lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 252 -DFPEKFFPKARDLVEK------LLVLDATKRLGCEEMEG 284 (311)
T ss_dssp -CCCTTCCHHHHHHHHH------HSCSSGGGSTTSGGGTC
T ss_pred -CCCcccCHHHHHHHHH------HccCCHhHCcChHHHcC
Confidence 2233444556666655 99999999999998743
No 28
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=440.01 Aligned_cols=250 Identities=21% Similarity=0.328 Sum_probs=209.8
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.+.|++.++||+|+||+||+|++ .+|+.||||++........+.+.+|+++|++++|||||++++++.+.+..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 45799999999999999999985 46999999999877666677899999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
|+||+|.++++.. .+++.++..++.||++||+|||++ +||||||||+|||++.+|.+||+|||+|+.+....
T Consensus 230 ~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 230 LEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp CTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred CCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCC-
Confidence 9999999999753 389999999999999999999999 99999999999999999999999999999875432
Q ss_pred CccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+. ...+.+........... .
T Consensus 302 ---~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----~~~~~~~~i~~~~~~~~-----~ 368 (423)
T 4fie_A 302 ---PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----PPLKAMKMIRDNLPPRL-----K 368 (423)
T ss_dssp ---CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCCC-----S
T ss_pred ---ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHcCCCCCC-----c
Confidence 2345678999999999999999999999999999999999999999642 22233333222211110 1
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.....+..+.++++. |+..||++|||+.|+++
T Consensus 369 ~~~~~s~~~~dli~~------~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 369 NLHKVSPSLKGFLDR------LLVRDPAQRATAAELLK 400 (423)
T ss_dssp CTTSSCHHHHHHHHH------HSCSSTTTSCCHHHHTT
T ss_pred ccccCCHHHHHHHHH------HcCCChhHCcCHHHHhc
Confidence 122334556666665 99999999999999876
No 29
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.3e-47 Score=414.97 Aligned_cols=246 Identities=21% Similarity=0.309 Sum_probs=191.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
-++|++.+.||+|+||+||+|.. .+|+.||||++... +....+++.+|++++++++|||||++++++.+++..|+|
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 35799999999999999999985 46999999999754 233456799999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+ +|+|.+++... +.+++.++..++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+|+....
T Consensus 92 mEy~-~g~L~~~l~~~---~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~ 164 (275)
T 3hyh_A 92 IEYA-GNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp EECC-CEEHHHHHHHS---CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC-----
T ss_pred EeCC-CCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCC
Confidence 9999 68999888764 3499999999999999999999999 999999999999999999999999999987653
Q ss_pred CCCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
. ......+||+.|||||++.+..| +.++||||+||++|||++|+.||.+. ..............
T Consensus 165 ~-----~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~-----~~~~~~~~i~~~~~----- 229 (275)
T 3hyh_A 165 G-----NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVLFKNISNGVY----- 229 (275)
T ss_dssp ---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCC-----
T ss_pred C-----CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHcCCC-----
Confidence 2 12345789999999999998776 57999999999999999999999642 23333333333321
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.++...+...+++++. |++.||++|||++|+++
T Consensus 230 ---~~p~~~s~~~~~li~~------~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 230 ---TLPKFLSPGAAGLIKR------MLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ---CCCTTSCHHHHHHHHH------HSCSSGGGSCCHHHHHH
T ss_pred ---CCCCCCCHHHHHHHHH------HccCChhHCcCHHHHHc
Confidence 2233345556666655 99999999999999987
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=471.89 Aligned_cols=455 Identities=19% Similarity=0.202 Sum_probs=305.0
Q ss_pred CeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCC
Q 001238 101 NRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDN 180 (1117)
Q Consensus 101 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N 180 (1117)
+.|++++|+++ .+|..+. ++|++|||++|.+++..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46778888887 5776665 77888888888887666677777777777777777777666777777777777777777
Q ss_pred CCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccc-cC
Q 001238 181 QLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSG-QI 259 (1117)
Q Consensus 181 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~-~~ 259 (1117)
+++ .+|.. .+++|++ |++++|.+.+ .+
T Consensus 80 ~l~-~lp~~--~l~~L~~-------------------------------------------------L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKH-------------------------------------------------LDLSFNAFDALPI 107 (520)
T ss_dssp CCC-EEECC--CCCCCSE-------------------------------------------------EECCSSCCSSCCC
T ss_pred cee-ecCcc--ccCCccE-------------------------------------------------EeccCCccccccc
Confidence 776 34433 3333333 3333333333 35
Q ss_pred CcCCCCCCCCcEEecCCCccCCcCCccCCCCCCC--cEEEccCCcC--cccCCcCCCCCC-CCCEEEcCCCcCCCCCcc-
Q 001238 260 PPELGDCTELQYIYLYENALTGSIPSKLGNLKNL--VNLFLWQNNL--VGIIPPELGNCS-QLSIIDISMNSLTGSIPQ- 333 (1117)
Q Consensus 260 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~~~~l~-~L~~LdLs~N~l~~~~p~- 333 (1117)
|..|+.+++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++.
T Consensus 108 p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~ 184 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184 (520)
T ss_dssp CGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC
T ss_pred hhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhh
Confidence 6777788889999999999886 456677777 9999999998 777888887766 344678888888876654
Q ss_pred ccCCCCCcceEeccccc-------ccCcccccccCCCCCcEEEecCccccCCCCcccc---cccchHHHHhccccccccC
Q 001238 334 TLGNLTSLQELQLSVNQ-------ISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFG---NLSNLTLLFVWHNRLEGEI 403 (1117)
Q Consensus 334 ~l~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~ 403 (1117)
.+.++++|+.|++++|. +.+.+| .+..+++|+.|++++|.+++..+..+. ..++|++|++++|++++.+
T Consensus 185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 185 SVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp CCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred hhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence 57788899999999987 666666 688888899999888887753322111 1235555666666665555
Q ss_pred CCCC-----CcccccceeecccccccCCCc-ccccCC---CCCCeeeccCccCCCCCCCCcccccccceeccCCCccccc
Q 001238 404 PPSI-----SNCQNLEAVDLSQNGLTGPIP-RGIFQL---KKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGF 474 (1117)
Q Consensus 404 ~~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 474 (1117)
|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+ .+.
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l------------------------~~~ 317 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM------------------------VHM 317 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC------------------------CCC
T ss_pred ccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc------------------------ccc
Confidence 5555 5555555555555555 233 233322 3445555555444 322
Q ss_pred CCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCcccc--ccchhhhcccccccccccCCcCCC-CCCCCc
Q 001238 475 IPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAG--NLPAGLHQLVRLQFADLSDNSVGG-MLSPDL 551 (1117)
Q Consensus 475 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~ 551 (1117)
. .+..+++|++|++++|++++..|..+..+++|++|+|++|+|++ .+|..+..+++|+.|++++|++++ ++...|
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 1 12455666666666666666566666666666666666666665 344556666666666666666666 555556
Q ss_pred CCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCcc
Q 001238 552 GSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLG 631 (1117)
Q Consensus 552 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~ 631 (1117)
..+++|+.|++++|++++..|..+. ++|+.|||++|+++ .+|..++.++++ +.|+|++|+|++..+..|..+++|+
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL-QELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC-CEEECCCCcCCccCHHHhccCCccc
Confidence 6777777777777777766665543 57888888888887 677766677776 6777777777743333477788888
Q ss_pred EEeccCccccCCcch
Q 001238 632 ILDLSHNELSGDLHF 646 (1117)
Q Consensus 632 ~LdLs~N~l~~~~~~ 646 (1117)
.|||++|+++|+++.
T Consensus 472 ~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 472 KIWLHTNPWDCSCPR 486 (520)
T ss_dssp EEECCSSCBCCCHHH
T ss_pred EEECcCCCCcccCCc
Confidence 888888888887653
No 31
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=2e-47 Score=419.46 Aligned_cols=247 Identities=27% Similarity=0.414 Sum_probs=194.9
Q ss_pred CCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeec----CCceEEE
Q 001238 778 LTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGAN----RKTKLLF 850 (1117)
Q Consensus 778 ~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~----~~~~~lv 850 (1117)
|++.++||+|+||+||+|.+ .+++.||+|++... .....++|.+|++++++++|||||++++++.+ ++..|+|
T Consensus 28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv 107 (290)
T 3fpq_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence 35667899999999999975 46899999999753 23345679999999999999999999998865 3457999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC-CCcceecccccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE-RYESCLADFGLARLVE 929 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~-~~~~kl~DfGla~~~~ 929 (1117)
||||++|+|.+++++. +.+++..+..++.||++||+|||++. ++||||||||+|||++. ++.+||+|||+|+...
T Consensus 108 mEy~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~ylH~~~-~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~ 183 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp EECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTSS-SCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred EeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence 9999999999999764 34899999999999999999999981 13999999999999985 7999999999998643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
. ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+. ........ .+.....+
T Consensus 184 ~------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~----~~~~~~~~-~i~~~~~~--- 248 (290)
T 3fpq_A 184 A------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYR-RVTSGVKP--- 248 (290)
T ss_dssp T------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHHHHHH-HHTTTCCC---
T ss_pred C------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC----CcHHHHHH-HHHcCCCC---
Confidence 2 12335689999999998874 6999999999999999999999999642 12222222 22222111
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
+.++...+..+.+++.. ||+.||++|||++|+++
T Consensus 249 --~~~~~~~~~~~~~li~~------~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 249 --ASFDKVAIPEVKEIIEG------CIRQNKDERYSIKDLLN 282 (290)
T ss_dssp --GGGGGCCCHHHHHHHHH------HSCSSGGGSCCHHHHHT
T ss_pred --CCCCccCCHHHHHHHHH------HccCChhHCcCHHHHhc
Confidence 11222333445555554 99999999999999876
No 32
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.5e-47 Score=433.19 Aligned_cols=263 Identities=25% Similarity=0.377 Sum_probs=210.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC------CCcEEEEEEeecCCc-cchHHHHHHHHHHhccCC-CCcceEEeeeecC-C
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP------SGLTVAVKRFRASDK-ISTGAFSSEIATLSRIRH-RNIVRLLGWGANR-K 845 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H-~niv~l~~~~~~~-~ 845 (1117)
.++|++.+.||+|+||+||+|.+. .++.||||+++.... ...++|.+|++++++++| ||||+++|+|.++ +
T Consensus 63 ~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~ 142 (353)
T 4ase_A 63 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 142 (353)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred HHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCC
Confidence 467999999999999999999743 246899999976433 335679999999999965 9999999998764 5
Q ss_pred ceEEEEEecCCCChhhhhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGEC-------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG 912 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~ 912 (1117)
..++|||||++|+|.++++.... ...+++.++..++.|||+||+|||++ +||||||||+|||++
T Consensus 143 ~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~ 219 (353)
T 4ase_A 143 PLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLS 219 (353)
T ss_dssp CCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred EEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeC
Confidence 68999999999999999975321 24589999999999999999999999 999999999999999
Q ss_pred CCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChh
Q 001238 913 ERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQH 991 (1117)
Q Consensus 913 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~ 991 (1117)
+++.+||+|||+|+...... .........||++|||||++.+..|+.++|||||||++|||+| |+.||.+... ...
T Consensus 220 ~~~~vKi~DFGlar~~~~~~--~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~-~~~ 296 (353)
T 4ase_A 220 EKNVVKICDFGLARDIYKDP--DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-DEE 296 (353)
T ss_dssp GGGCEEECCCGGGSCTTTCT--TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-SHH
T ss_pred CCCCEEECcchhhhhcccCC--CceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH-HHH
Confidence 99999999999999775432 2233456789999999999999999999999999999999998 9999975322 222
Q ss_pred HHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 992 VIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
+.. .+..... +..+...+..+.+++. .||+.||++|||+.+|++.|+.+.+.
T Consensus 297 ~~~----~i~~g~~------~~~p~~~~~~~~~li~------~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 297 FCR----RLKEGTR------MRAPDYTTPEMYQTML------DCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp HHH----HHHHTCC------CCCCTTCCHHHHHHHH------HHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHH----HHHcCCC------CCCCccCCHHHHHHHH------HHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 222 2222211 1223334444555444 49999999999999999999988653
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-47 Score=464.83 Aligned_cols=456 Identities=18% Similarity=0.171 Sum_probs=301.6
Q ss_pred EEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCC
Q 001238 78 GLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQ 157 (1117)
Q Consensus 78 ~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 157 (1117)
.+|++++++. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 5789999988 5888777 899999999999998888999999999999999999998889999999999999999999
Q ss_pred cCCCCchhccCCcCCcEEeccCCCCCC-CCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCC
Q 001238 158 LEGAIPIQIGNLSSLTQLFLYDNQLTD-AIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLP 236 (1117)
Q Consensus 158 l~~~~p~~~~~L~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp 236 (1117)
++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|+... ..+..+++|
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L--------------- 138 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHL--------------- 138 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTS---------------
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccc---------------
Confidence 99 78877 89999999999999987 467777777777777777665211 122222222
Q ss_pred cccccccccceeecccccc--cccCCcCCCCCC-CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCC
Q 001238 237 PTLGLLKRLQTIAIYTALL--SGQIPPELGDCT-ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGN 313 (1117)
Q Consensus 237 ~~l~~l~~L~~L~l~~~~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 313 (1117)
+|+.|++++|.+ .+..|..+..+. +...+++++|++.+.++. ..+.+
T Consensus 139 -------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----------------------~~~~~ 188 (520)
T 2z7x_B 139 -------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD-----------------------VSVKT 188 (520)
T ss_dssp -------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC-----------------------CCCTT
T ss_pred -------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhh-----------------------hhhhc
Confidence 003333333333 333333333332 122334444444333332 12334
Q ss_pred CCCCCEEEcCCCc-------CCCCCccccCCCCCcceEecccccccCccccccc---CCCCCcEEEecCccccCCCCccc
Q 001238 314 CSQLSIIDISMNS-------LTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIG---NCQRLAQIELDNNQITGAIPSEF 383 (1117)
Q Consensus 314 l~~L~~LdLs~N~-------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~~ 383 (1117)
+++|+.|++++|. +.+.+| .++.+++|+.|++++|.+++..+..+. ..++|++|++++|+++|.+|..+
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred ccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccch
Confidence 4444444444443 333333 344455555555555544432211111 12355555555555555555554
Q ss_pred -----ccccchHHHHhccccccccCC-CCCCcc---cccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCC
Q 001238 384 -----GNLSNLTLLFVWHNRLEGEIP-PSISNC---QNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPE 454 (1117)
Q Consensus 384 -----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 454 (1117)
+.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+... + .+..+++|++|++++|++++..|..
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhh
Confidence 5555555555555555 233 222222 4567777777776532 1 1246677777777777777777777
Q ss_pred cccccccceeccCCCcccc--cCCCCcCCCCCCCEEEccCCcCCCCCCc-ccccCCCCceEEccCCccccccchhhhccc
Q 001238 455 MGNCSSLIRFRANSNKLTG--FIPPEIGNLKNLNFLDLGSNRLTGSIPD-EITGCRNLTFLDVHSNSIAGNLPAGLHQLV 531 (1117)
Q Consensus 455 ~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 531 (1117)
++++++|++|++++|++++ .+|..++.+++|++|+|++|++++.+|. .+..+++|++|++++|++++..|..+. +
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence 7777777777777777775 4456677788888888888888764554 477778888888888888776666554 6
Q ss_pred ccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccc
Q 001238 532 RLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIP 596 (1117)
Q Consensus 532 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 596 (1117)
+|+.|++++|+|+.++...+ .+++|+.|+|++|+|++..+..|..+++|+.|++++|++++..+
T Consensus 422 ~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 422 RIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 78888888888886655444 78888888888888885444458888899999999999886543
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.4e-47 Score=462.73 Aligned_cols=477 Identities=18% Similarity=0.174 Sum_probs=297.5
Q ss_pred cEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeeccc
Q 001238 173 TQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYT 252 (1117)
Q Consensus 173 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~ 252 (1117)
.+.++++|.++ .+|..+. ++|++|++++| .+++..|..+.++++|++|++++
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n-------------------------~l~~~~~~~~~~l~~L~~L~Ls~ 59 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFN-------------------------KITYIGHGDLRACANLQVLILKS 59 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSS-------------------------CCCEECSSTTSSCTTCCEEECTT
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCC-------------------------ccCccChhhhhcCCcccEEECCC
Confidence 34567777776 4555443 44555555554 44444455555555555555555
Q ss_pred ccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcc-cCCcCCCCCCCCCEEEcCCCcCCCCC
Q 001238 253 ALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVG-IIPPELGNCSQLSIIDISMNSLTGSI 331 (1117)
Q Consensus 253 ~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~LdLs~N~l~~~~ 331 (1117)
|.+.+..|..|..+++|++|+|++|++++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+
T Consensus 60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence 55555555556666666666666666665544456666666666666666654 23445666666666666666533333
Q ss_pred c-cccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcc-cccccchHHHHhccccccccC--C-CC
Q 001238 332 P-QTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSE-FGNLSNLTLLFVWHNRLEGEI--P-PS 406 (1117)
Q Consensus 332 p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~--~-~~ 406 (1117)
| ..|.++++|++|++++|.+++..|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|++++.. + ..
T Consensus 140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 218 (549)
T 2z81_A 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218 (549)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccch
Confidence 3 45566666666666666666556666666666666666666654 22322 234556666666666665431 1 12
Q ss_pred CCcccccceeecccccccCCCcc----cccCCCCCCeeeccCccCCCCC------CCCcccccccceeccCCCcccccC-
Q 001238 407 ISNCQNLEAVDLSQNGLTGPIPR----GIFQLKKLNKLLLLSNNLSGVI------PPEMGNCSSLIRFRANSNKLTGFI- 475 (1117)
Q Consensus 407 ~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~l~~~~- 475 (1117)
...+++|+.|++++|.+++..+. .+..+.+|+.+++++|.+.+.. ...+..+.+|+.|++.++.+....
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 298 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence 23456666777777666543332 2344566777777777665431 123455666777777776655321
Q ss_pred ----CCCcCCCCCCCEEEccCCcCCCCCCccc-ccCCCCceEEccCCccccccch---hhhcccccccccccCCcCCCCC
Q 001238 476 ----PPEIGNLKNLNFLDLGSNRLTGSIPDEI-TGCRNLTFLDVHSNSIAGNLPA---GLHQLVRLQFADLSDNSVGGML 547 (1117)
Q Consensus 476 ----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~i~~~~ 547 (1117)
+..+..+.+|+.|++++|+++ .+|..+ ..+++|++|+|++|++.+..|. .+..+++|+.|++++|+++++.
T Consensus 299 ~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 377 (549)
T 2z81_A 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377 (549)
T ss_dssp SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence 111223457788888888877 555555 5678888888888888776543 3667778888888888887664
Q ss_pred C--CCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCcccccc
Q 001238 548 S--PDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELT 625 (1117)
Q Consensus 548 ~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~ 625 (1117)
. ..+..+++|+.|++++|+|+ .+|..+..+++|+.|++++|+++ .+|..+. +.+ +.|+|++|+|++.+ .
T Consensus 378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L-~~L~Ls~N~l~~~~----~ 448 (549)
T 2z81_A 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTL-EVLDVSNNNLDSFS----L 448 (549)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTC-SEEECCSSCCSCCC----C
T ss_pred cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCc-eEEECCCCChhhhc----c
Confidence 3 44777788888888888887 56677777788888888888877 4444332 334 67888888887643 4
Q ss_pred CCCCccEEeccCccccCCcchhhhcccceEEEeecccccCCCCC-CcccccCCcccccCCCCCCc
Q 001238 626 GLNKLGILDLSHNELSGDLHFLAELQNLVVLNVSHNNFSGRVPD-TPFFAKLPLSVLSGNPSLCF 689 (1117)
Q Consensus 626 ~l~~L~~LdLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~p~-~~~~~~~~~~~~~gN~~~c~ 689 (1117)
.+++|+.|||++|+++ .+|....+++|++|+|++|++++.+|. ...+..+....+++|||.|.
T Consensus 449 ~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 449 FLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred cCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 6778888888888887 444456678888888888888877765 34567777778888888874
No 35
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.4e-47 Score=422.45 Aligned_cols=242 Identities=24% Similarity=0.295 Sum_probs=194.4
Q ss_pred cCCCCCCeeeecCCeEEEEEEc----CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL----PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~----~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|++.+.||+|+||+||+|+. .+++.||||+++... .....++.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 4688999999999999999975 247899999997532 2233468899999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
|||||+||+|.+++... +.+++.++..++.||+.||+|||++ +||||||||+|||+++++.+||+|||+|+...
T Consensus 104 vmEy~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKE---VMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EECCCTTCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEEcCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence 99999999999999764 3499999999999999999999999 99999999999999999999999999998754
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+. ...+.+........
T Consensus 178 ~~~----~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~-----~~~~~~~~i~~~~~----- 243 (304)
T 3ubd_A 178 DHE----KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK-----DRKETMTMILKAKL----- 243 (304)
T ss_dssp -------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-----
T ss_pred CCC----ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc-----CHHHHHHHHHcCCC-----
Confidence 322 2334578999999999999999999999999999999999999999642 23334444443332
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTM 1046 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~ 1046 (1117)
.++...+....++++. |++.||++||++
T Consensus 244 ---~~p~~~s~~~~~li~~------~L~~dP~~R~ta 271 (304)
T 3ubd_A 244 ---GMPQFLSPEAQSLLRM------LFKRNPANRLGA 271 (304)
T ss_dssp ---CCCTTSCHHHHHHHHH------HTCSSGGGSTTC
T ss_pred ---CCCCcCCHHHHHHHHH------HcccCHHHCCCC
Confidence 1233345556666665 999999999984
No 36
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=1.5e-45 Score=408.63 Aligned_cols=253 Identities=21% Similarity=0.329 Sum_probs=186.7
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCC--------
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRK-------- 845 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-------- 845 (1117)
.+|++.+.||+|+||+||+|++ .+|+.||||+++... ....+++.+|++++++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 3588899999999999999985 479999999997543 334467899999999999999999999886544
Q ss_pred ----ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecc
Q 001238 846 ----TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLAD 921 (1117)
Q Consensus 846 ----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~D 921 (1117)
..|+|||||++|+|.+++.........++..++.++.||++||+|||++ +||||||||+|||++.++.+||+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEcc
Confidence 3689999999999999998765444467788899999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCc--------cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHH
Q 001238 922 FGLARLVEDDSGGS--------FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVI 993 (1117)
Q Consensus 922 fGla~~~~~~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~ 993 (1117)
||+|+......... ....+..+||+.|||||++.+..|+.++||||+||++|||++ ||.. .....
T Consensus 162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~----~~~~~ 234 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFST----QMERV 234 (299)
T ss_dssp CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSS----HHHHH
T ss_pred CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCC----ccHHH
Confidence 99998875432211 112345689999999999999999999999999999999996 7743 11222
Q ss_pred HHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 994 QWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..+..... ...+ +..... .... ..++..|++.||++|||+.|+++
T Consensus 235 ~~~~~~~~-~~~p-----~~~~~~-~~~~------~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 235 RTLTDVRN-LKFP-----PLFTQK-YPCE------YVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHHHT-TCCC-----HHHHHH-CHHH------HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHhc-CCCC-----CCCccc-CHHH------HHHHHHHcCCChhHCcCHHHHhc
Confidence 22222211 1111 000000 1112 23455699999999999999876
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-44 Score=450.76 Aligned_cols=526 Identities=22% Similarity=0.221 Sum_probs=341.9
Q ss_pred eEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCC
Q 001238 102 RLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQ 181 (1117)
Q Consensus 102 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~ 181 (1117)
..+=++.+++ .+|..+- ..+++|||++|+|++..|.+|.++++|++|||++|+|++..|..|++|++|++|+|++|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3455666777 6786553 478999999999996666789999999999999999997667789999999999999999
Q ss_pred CCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCCc
Q 001238 182 LTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPP 261 (1117)
Q Consensus 182 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~ 261 (1117)
|++..+..|.++++|++|++++|+ +++. .+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~-------------------------l~~l------------------------~~~ 142 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETN-------------------------LASL------------------------ENF 142 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSC-------------------------CCCS------------------------TTC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCc-------------------------CCCC------------------------Chh
Confidence 987555666776666666666554 2222 222
Q ss_pred CCCCCCCCcEEecCCCccCC-cCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCC----CEEEcCCCcCCCCCccccC
Q 001238 262 ELGDCTELQYIYLYENALTG-SIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQL----SIIDISMNSLTGSIPQTLG 336 (1117)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L----~~LdLs~N~l~~~~p~~l~ 336 (1117)
.|+++++|++|+|++|.+++ .+|..++.+++|++|+|++|++++..+..|..+.++ ..++++.|.++...+..+
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~- 221 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF- 221 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-
Confidence 33344444444444444432 233444444444444444444444444443332222 234455555543322222
Q ss_pred CCCCcceEecccccccC-cccccccCCCCCcEEEecCcc------ccCCCCcccccccchHHHHhcccccc---ccCCCC
Q 001238 337 NLTSLQELQLSVNQISG-EIPAQIGNCQRLAQIELDNNQ------ITGAIPSEFGNLSNLTLLFVWHNRLE---GEIPPS 406 (1117)
Q Consensus 337 ~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~------l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~~~~ 406 (1117)
....++.|++++|.... ..+..+..+..++...+..+. +.......+..+..+..+.+..+... ...+..
T Consensus 222 ~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 301 (635)
T 4g8a_A 222 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL 301 (635)
T ss_dssp TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT
T ss_pred cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh
Confidence 22334445554443331 122233444444444332221 11222223333334443333333221 123344
Q ss_pred CCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCC
Q 001238 407 ISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLN 486 (1117)
Q Consensus 407 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 486 (1117)
+..+.+++.+++.+|.+... ..+.....|+.|++.+|.+.+..+. .+..|+.+++..|.+... .....+++|+
T Consensus 302 ~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~ 374 (635)
T 4g8a_A 302 FNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLE 374 (635)
T ss_dssp TGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCC
T ss_pred hhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccc
Confidence 55666777777777777632 2344556778888888877755443 345677777777776643 2345678888
Q ss_pred EEEccCCcCCC--CCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCC-CCCCcCCCccccEEecc
Q 001238 487 FLDLGSNRLTG--SIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGM-LSPDLGSLSSLTKLVLN 563 (1117)
Q Consensus 487 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~L~ 563 (1117)
.|++++|.+.. ..+..+..+.+|++|+++.|.+.. .+..+..+++|+.++++.|..... ....|..+.+++.++++
T Consensus 375 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls 453 (635)
T 4g8a_A 375 FLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453 (635)
T ss_dssp EEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred cchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 88888888753 355666777888888888888774 445677788888888887775554 34567788888888888
Q ss_pred ccccCCCCCcccccccceeEEeccccccc-cccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccC
Q 001238 564 KNRFAGSIPSQLGSCVKLQLLDLSSNQLS-GNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSG 642 (1117)
Q Consensus 564 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 642 (1117)
.|.+.+..+..+..++.|+.|+|++|.+. +.+|..+..++++ +.|+|++|+|++.+|..|.++++|++|+|++|+|++
T Consensus 454 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred ccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 88888888888888888888888888744 4567778888887 788888888888888888888888888998888888
Q ss_pred Ccch-hhhcccceEEEeecccccCCCCCCc-cc-ccCCcccccCCCCCCc
Q 001238 643 DLHF-LAELQNLVVLNVSHNNFSGRVPDTP-FF-AKLPLSVLSGNPSLCF 689 (1117)
Q Consensus 643 ~~~~-l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~~~~~~~~gN~~~c~ 689 (1117)
.++. +..+++|++|||++|+|++.+|+.- .+ ..+....+++|||.|.
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 6654 7788888899999998888877642 23 4677788899999985
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.3e-45 Score=446.20 Aligned_cols=353 Identities=17% Similarity=0.168 Sum_probs=223.7
Q ss_pred CcCCCCCCCCcEEecCCCccCCcCCccCCCCCCC--cEEEccCCcC--cccCCcCCCCCC--CCCEEEcCCCcCCCCCcc
Q 001238 260 PPELGDCTELQYIYLYENALTGSIPSKLGNLKNL--VNLFLWQNNL--VGIIPPELGNCS--QLSIIDISMNSLTGSIPQ 333 (1117)
Q Consensus 260 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~~~~l~--~L~~LdLs~N~l~~~~p~ 333 (1117)
|..|+++++|++|+|++|++++. .+..+++| ++|++++|.+ ++..|..+..+. .| .+++++|.+.+.++.
T Consensus 139 p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVN 214 (562)
T ss_dssp CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCE
T ss_pred hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhh
Confidence 44566677888888998888753 34555555 8888888888 777777776654 33 567788888776554
Q ss_pred -ccCCCCCcceEeccccc-----ccCcccccccCCCCCcEEEecCccccCCCCccc---ccccchHHHHhccccccccCC
Q 001238 334 -TLGNLTSLQELQLSVNQ-----ISGEIPAQIGNCQRLAQIELDNNQITGAIPSEF---GNLSNLTLLFVWHNRLEGEIP 404 (1117)
Q Consensus 334 -~l~~l~~L~~L~Ls~N~-----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~ 404 (1117)
.+..+++|+.|++++|. +.+ ....+..+++|+.|+++++.+.+.....+ ...++|++|++++|++++.+|
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC
T ss_pred hcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc
Confidence 46677888888888874 222 22346677788888877776653211100 011245555555555554444
Q ss_pred CCC-----CcccccceeecccccccCCCc-ccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCC
Q 001238 405 PSI-----SNCQNLEAVDLSQNGLTGPIP-RGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPE 478 (1117)
Q Consensus 405 ~~~-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 478 (1117)
..+ ..++.|+.++++.|.+ .+| ..+..+ ....+|++|++++|.+.... .
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~~~~~~--~ 348 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV---------------------FAEMNIKMLSISDTPFIHMV--C 348 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--C
T ss_pred chhhhcccccchheehhhccccee--ecChhhhhhh---------------------hccCcceEEEccCCCccccc--C
Confidence 444 3444444444444443 122 111111 00134555555555544221 1
Q ss_pred cCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccc--cchhhhcccccccccccCCcCCC-CCCCCcCCCc
Q 001238 479 IGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGN--LPAGLHQLVRLQFADLSDNSVGG-MLSPDLGSLS 555 (1117)
Q Consensus 479 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~ 555 (1117)
...+++|++|++++|++++..|..+.++++|++|+|++|++++. +|..|..+++|+.|++++|++++ ++...|..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 24566677777777777666666677777777777777777653 24556667777777777777766 5556677777
Q ss_pred cccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEec
Q 001238 556 SLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDL 635 (1117)
Q Consensus 556 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL 635 (1117)
+|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..++.++.+ +.|+|++|+|++..+..|..+++|+.|+|
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-QELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-SEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-CEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 888888888887766555443 57888888888887 677777777777 67888888887433333788888888888
Q ss_pred cCccccCCcch
Q 001238 636 SHNELSGDLHF 646 (1117)
Q Consensus 636 s~N~l~~~~~~ 646 (1117)
++|+++|+++.
T Consensus 505 ~~N~~~c~c~~ 515 (562)
T 3a79_B 505 HDNPWDCTCPG 515 (562)
T ss_dssp CSCCBCCCHHH
T ss_pred cCCCcCCCcch
Confidence 88888887765
No 39
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-43 Score=407.39 Aligned_cols=202 Identities=22% Similarity=0.335 Sum_probs=171.6
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeec------CCc
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGAN------RKT 846 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~------~~~ 846 (1117)
++|++.+.||+|+||+||+|.+ .+|+.||||+++... ....+++.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 4789999999999999999975 579999999997543 2234568899999999999999999998653 367
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLAR 926 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~ 926 (1117)
.|+|||||+ |+|.+++... +.+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~---~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~ 206 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSS---QPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMAR 206 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSS---SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEeCCC-CCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceee
Confidence 899999996 6799988764 3499999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
.+..............+||+.|||||++.+. .|+.++||||+||++|||++|++||.+
T Consensus 207 ~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g 265 (398)
T 4b99_A 207 GLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPG 265 (398)
T ss_dssp CC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred ecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCC
Confidence 7754332233345567999999999998764 569999999999999999999999965
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.6e-44 Score=437.14 Aligned_cols=456 Identities=18% Similarity=0.165 Sum_probs=293.4
Q ss_pred EEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCC
Q 001238 77 VGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSN 156 (1117)
Q Consensus 77 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 156 (1117)
..++++++++.+ +|..+. ++|++|+|++|++++..|.+|+++++|++|+|++|.+++..|+.|..+++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 467777777765 776655 67888888888888777778888888888888888888766777888888888888888
Q ss_pred CcCCCCchhccCCcCCcEEeccCCCCCC-CCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccC
Q 001238 157 QLEGAIPIQIGNLSSLTQLFLYDNQLTD-AIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFL 235 (1117)
Q Consensus 157 ~l~~~~p~~~~~L~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~l 235 (1117)
+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|++++|+... ..+..+++|
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L-------------- 169 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHL-------------- 169 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTS--------------
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----Cchhhhhhc--------------
Confidence 887 66665 77888888888888775 234566666666666665554211 111111111
Q ss_pred Ccccccccccceeecccccc--cccCCcCCCCCC-CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCC
Q 001238 236 PPTLGLLKRLQTIAIYTALL--SGQIPPELGDCT-ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELG 312 (1117)
Q Consensus 236 p~~l~~l~~L~~L~l~~~~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 312 (1117)
+|+.|++++|.+ .+..|..+..+. ..-.+++++|.+.+.++.. .+.
T Consensus 170 --------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-----------------------~~~ 218 (562)
T 3a79_B 170 --------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-----------------------SVN 218 (562)
T ss_dssp --------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE-----------------------EES
T ss_pred --------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh-----------------------ccc
Confidence 113333333333 333333333322 0113344455444433321 233
Q ss_pred CCCCCCEEEcCCCc-----CCCCCccccCCCCCcceEecccccccCcc----cccccCCCCCcEEEecCccccCCCCccc
Q 001238 313 NCSQLSIIDISMNS-----LTGSIPQTLGNLTSLQELQLSVNQISGEI----PAQIGNCQRLAQIELDNNQITGAIPSEF 383 (1117)
Q Consensus 313 ~l~~L~~LdLs~N~-----l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 383 (1117)
.+++|+.|++++|. +.+ ....+..+++|+.|+++++.+.+.. +..+ ...+|++|++++|.++|.+|..+
T Consensus 219 ~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~ 296 (562)
T 3a79_B 219 ALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREE 296 (562)
T ss_dssp SEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCC
T ss_pred ccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchh
Confidence 44445555555443 111 1123444555555555555443211 1111 12356666666666665555554
Q ss_pred -----ccccchHHHHhccccccccCC-CCCCc---ccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCC
Q 001238 384 -----GNLSNLTLLFVWHNRLEGEIP-PSISN---CQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPE 454 (1117)
Q Consensus 384 -----~~l~~L~~L~L~~N~l~~~~~-~~~~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 454 (1117)
..++.|+.+++..|.+ .+| ..+.. ..+|+.|++++|.+... + ....+++|++|++++|++++..|..
T Consensus 297 ~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 297 FTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp CCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc-c-CccCCCCceEEECCCCccccchhhh
Confidence 4555555555555554 222 11111 14688888888887632 1 1256788888888888888888888
Q ss_pred cccccccceeccCCCccccc--CCCCcCCCCCCCEEEccCCcCCCCCC-cccccCCCCceEEccCCccccccchhhhccc
Q 001238 455 MGNCSSLIRFRANSNKLTGF--IPPEIGNLKNLNFLDLGSNRLTGSIP-DEITGCRNLTFLDVHSNSIAGNLPAGLHQLV 531 (1117)
Q Consensus 455 ~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 531 (1117)
++++++|++|++++|++++. +|..|.++++|++|+|++|++++.+| ..+..+++|++|++++|+|++..|..+. +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~ 450 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P 450 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence 88888899999999988863 34678889999999999999987444 4578889999999999999876665543 6
Q ss_pred ccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccc
Q 001238 532 RLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIP 596 (1117)
Q Consensus 532 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 596 (1117)
+|+.|++++|+|+.++...+ .+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+++..|
T Consensus 451 ~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 88888888888887766655 88888888888888885444448888888888888888886554
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-42 Score=406.26 Aligned_cols=420 Identities=22% Similarity=0.252 Sum_probs=183.9
Q ss_pred ccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEE
Q 001238 96 SLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQL 175 (1117)
Q Consensus 96 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L 175 (1117)
+.++|++|++++|++ |.+|++|+++++|++|+|++|.++|.+|.+++.+++|++++++.|.. .+|++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 358899999999999 79999999999999999999999999999999999999998887753 568999
Q ss_pred eccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccc
Q 001238 176 FLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALL 255 (1117)
Q Consensus 176 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l 255 (1117)
++++|++++ +|.. .++|++|++++| .+++ +|.. +++|+.|++++|.+
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n-------------------------~l~~-lp~~---~~~L~~L~l~~n~l 123 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCN-------------------------SLTE-LPEL---PQSLKSLLVDNNNL 123 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSS-------------------------CCSS-CCCC---CTTCCEEECCSSCC
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCC-------------------------cCCc-cccc---cCCCcEEECCCCcc
Confidence 999999885 4431 234444444444 3333 2221 13344444444433
Q ss_pred cccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCcccc
Q 001238 256 SGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTL 335 (1117)
Q Consensus 256 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l 335 (1117)
.+ +|.. .++|++|++++|++++ +| .|+++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+
T Consensus 124 ~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~ 191 (454)
T 1jl5_A 124 KA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-EL 191 (454)
T ss_dssp SC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CC
T ss_pred Cc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cc
Confidence 32 1110 1355555555555553 44 35555555555555555553 33322 355555555555553 33 35
Q ss_pred CCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccce
Q 001238 336 GNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEA 415 (1117)
Q Consensus 336 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 415 (1117)
+++++|++|++++|++++ +|... ++|++|++++|+++ .+| .|+.+++ |++
T Consensus 192 ~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~------------------------L~~ 241 (454)
T 1jl5_A 192 QNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPF------------------------LTT 241 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTT------------------------CCE
T ss_pred cCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCC------------------------CCE
Confidence 555555555555555553 22211 34555555555554 333 2444444 444
Q ss_pred eecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcC
Q 001238 416 VDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRL 495 (1117)
Q Consensus 416 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 495 (1117)
|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++. |.. .++|+.|++++|++
T Consensus 242 L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 242 IYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEI 309 (454)
T ss_dssp EECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCC
T ss_pred EECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcC
Confidence 4444444442 3321 2344555555555443 2221 24455555555555432 110 13555566666655
Q ss_pred CCCCCcccccC-CCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCC--CCC
Q 001238 496 TGSIPDEITGC-RNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAG--SIP 572 (1117)
Q Consensus 496 ~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~ 572 (1117)
++. + .+ ++|++|++++|++++ +|.. +++|+.|++++|+++.++. .+++|+.|++++|++++ .+|
T Consensus 310 ~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 310 RSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp SEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCC
T ss_pred Ccc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCCh
Confidence 531 1 12 355666666666554 3322 3556666666666665444 24566666666666665 444
Q ss_pred cccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccC--CccccccCCCCccEEeccCccccCCcc
Q 001238 573 SQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICG--ELPAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 573 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~--~~p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
..+.. |+.|.+.|.+|..+ +++ +.|++++|++++ .+|. .|+.|++.+|.+.+.++
T Consensus 377 ~~l~~--------L~~n~~~~~i~~~~---~~L-~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 377 ESVED--------LRMNSHLAEVPELP---QNL-KQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYE 433 (454)
T ss_dssp TTCCE--------EECCC---------------------------------------------------------
T ss_pred HHHHh--------hhhccccccccccc---CcC-CEEECCCCcCCccccchh------hHhheeCcCcccCCccc
Confidence 44432 23355555665532 334 566777777765 4553 34555667777766543
No 42
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=1.6e-42 Score=395.17 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=171.5
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc----CCCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCce
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL----PSGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 847 (1117)
...++|++.++||+|+||+||+|+. .+++.||||++.... ...++.+|+++++.+ +|||||++++++.+.++.
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 4567899999999999999999974 247899999987543 345788999999998 699999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC-Ccceeccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER-YESCLADFGLAR 926 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~-~~~kl~DfGla~ 926 (1117)
|+||||+++|+|.+++.. +++.++..++.|+++||+|||++ +||||||||+|||++.+ +.+||+|||+|+
T Consensus 96 ~lvmE~~~g~~L~~~~~~------l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~ 166 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILNS------LSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQ 166 (361)
T ss_dssp EEEEECCCCCCHHHHHTT------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred EEEEeCCCcccHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCc
Confidence 999999999999999842 88999999999999999999999 99999999999999877 799999999998
Q ss_pred cccCCCCC------------------------ccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCC
Q 001238 927 LVEDDSGG------------------------SFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKP 981 (1117)
Q Consensus 927 ~~~~~~~~------------------------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P 981 (1117)
...+.... ........+||+.|||||++.+. .|+.++||||+||++|||++|+.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~P 246 (361)
T 4f9c_A 167 GTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYP 246 (361)
T ss_dssp ECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSS
T ss_pred ccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCC
Confidence 65432110 00112345899999999998765 589999999999999999999999
Q ss_pred CCC
Q 001238 982 VDA 984 (1117)
Q Consensus 982 ~~~ 984 (1117)
|..
T Consensus 247 f~~ 249 (361)
T 4f9c_A 247 FYK 249 (361)
T ss_dssp SSC
T ss_pred CCC
Confidence 954
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-42 Score=406.26 Aligned_cols=339 Identities=26% Similarity=0.337 Sum_probs=206.1
Q ss_pred CCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEec
Q 001238 267 TELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQL 346 (1117)
Q Consensus 267 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 346 (1117)
++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .|+++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456666676666665 5543 2566677777776664 2221 1567777777777774 55 4677777777777
Q ss_pred ccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCC
Q 001238 347 SVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGP 426 (1117)
Q Consensus 347 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 426 (1117)
++|++++ +|..+ .+|++|++++|++++ +| .|+++++|+.|++++|++++ +|... ++|++|++++|.++ .
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-S
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-c
Confidence 7777764 44332 467777777777775 44 46777777777777777764 33322 48899999999998 5
Q ss_pred CcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccC
Q 001238 427 IPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGC 506 (1117)
Q Consensus 427 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 506 (1117)
+|. +..+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. +++|++|++++|++++. |.. .
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~ 296 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---P 296 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---C
T ss_pred ccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---C
Confidence 774 8889999999999999986 3433 3789999999999986 4443 37899999999998862 211 2
Q ss_pred CCCceEEccCCccccccchhhhcc-cccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEe
Q 001238 507 RNLTFLDVHSNSIAGNLPAGLHQL-VRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLD 585 (1117)
Q Consensus 507 ~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 585 (1117)
++|++|++++|++++. + .+ .+|+.|++++|++++++.. +++|+.|++++|++++ +|. .+++|+.|+
T Consensus 297 ~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~ 363 (454)
T 1jl5_A 297 PNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE-VPE---LPQNLKQLH 363 (454)
T ss_dssp TTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccccccc----CCcCCEEECCCCcccc-ccc---hhhhccEEE
Confidence 6889999999998863 2 23 4788899999988876542 5788889999998884 454 467888999
Q ss_pred cccccccc--ccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccC--CcchhhhcccceEEEeecc
Q 001238 586 LSSNQLSG--NIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSG--DLHFLAELQNLVVLNVSHN 661 (1117)
Q Consensus 586 Ls~N~l~~--~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~--~~~~l~~l~~L~~L~ls~N 661 (1117)
+++|++++ .+|.+++ +|+.|++.+.+|.. +++|+.||+++|++++ .+| .+++.|.+.+|
T Consensus 364 L~~N~l~~l~~ip~~l~---------~L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~ 426 (454)
T 1jl5_A 364 VEYNPLREFPDIPESVE---------DLRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSE 426 (454)
T ss_dssp CCSSCCSSCCCCCTTCC---------EEECCC------------------------------------------------
T ss_pred CCCCCCCcCCCChHHHH---------hhhhcccccccccc---cCcCCEEECCCCcCCccccch-----hhHhheeCcCc
Confidence 99999887 6676653 34557777777763 4678888888888886 343 24566777777
Q ss_pred cccCCCCC
Q 001238 662 NFSGRVPD 669 (1117)
Q Consensus 662 ~l~~~~p~ 669 (1117)
.+.+.+|.
T Consensus 427 ~~~~~~~~ 434 (454)
T 1jl5_A 427 RVVDPYEF 434 (454)
T ss_dssp --------
T ss_pred ccCCcccc
Confidence 77765553
No 44
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=5.5e-42 Score=409.44 Aligned_cols=248 Identities=22% Similarity=0.263 Sum_probs=200.4
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC---ccchHHHHH---HHHHHhccCCCCcceEEeeeecCCceE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD---KISTGAFSS---EIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~---E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
++|++.++||+|+||+||+|+. .+|+.||||++.+.. ......+.+ ++++++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 5789999999999999999985 469999999996431 112223333 466777889999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
+|||||+||+|.+++... +.+++..++.++.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+..
T Consensus 269 lVmEy~~GGdL~~~l~~~---~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEECCCCSCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeec
Confidence 999999999999999764 4599999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
... .....+||+.|||||++.. ..|+.++||||+||++|||++|++||.+.... ...+.........
T Consensus 343 ~~~------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~--~~~~i~~~i~~~~---- 410 (689)
T 3v5w_A 343 SKK------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK--DKHEIDRMTLTMA---- 410 (689)
T ss_dssp SSC------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC--CHHHHHHHHHHCC----
T ss_pred CCC------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHHhhcCCC----
Confidence 542 2345689999999999964 57999999999999999999999999753222 2223333333322
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCC-----HHHHHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPT-----MKDVAA 1051 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs-----~~~v~~ 1051 (1117)
..++...+...+.++.. |++.||.+|++ ++||.+
T Consensus 411 ----~~~p~~~S~~a~dLI~~------lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 411 ----VELPDSFSPELRSLLEG------LLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp ----CCCCTTSCHHHHHHHHH------HTCSCGGGCTTCSSSTHHHHTT
T ss_pred ----CCCCccCCHHHHHHHHH------HccCCHhHCCCCCCCCHHHHhc
Confidence 12233445566666665 99999999997 677765
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.6e-42 Score=386.77 Aligned_cols=295 Identities=31% Similarity=0.508 Sum_probs=209.1
Q ss_pred ccchhHHHHHHHHHhhccCCCCCCCCCCCCCCCCcc--eeeEEecCC---CcEEEEecccccccC--cCCccccccccCC
Q 001238 29 YAVNRQGEALLSWKRNWKGSDDGLSNWSPSDETPCK--WFGVSCNLN---NQVVGLDLRYVDLLG--HVPTNFTSLLSLN 101 (1117)
Q Consensus 29 ~~~~~~~~aLl~~k~~~~~~~~~l~sW~~~~~~~C~--W~gv~C~~~---~~v~~l~l~~~~l~~--~~~~~~~~l~~L~ 101 (1117)
.|.+.|++||++||+++.++. .+++|..+ .+||. |.||+|+.. ++|+.++++++++.| .+|..|..+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 488899999999999997665 79999764 56888 999999854 688888887777777 6777777777777
Q ss_pred eEeccC-CCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCC
Q 001238 102 RLVLSG-TNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDN 180 (1117)
Q Consensus 102 ~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N 180 (1117)
.|+|++ |++++.+|.+|+++++|++|+|++|.+++.+|..+..+++|++|+|++|++++.+|..|+++++|++|+|++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 777774 7777777777777777777777777776667766777777777777777776666666666666666666666
Q ss_pred CCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCC
Q 001238 181 QLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIP 260 (1117)
Q Consensus 181 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p 260 (1117)
++++.+|..++
T Consensus 160 ~l~~~~p~~l~--------------------------------------------------------------------- 170 (313)
T 1ogq_A 160 RISGAIPDSYG--------------------------------------------------------------------- 170 (313)
T ss_dssp CCEEECCGGGG---------------------------------------------------------------------
T ss_pred cccCcCCHHHh---------------------------------------------------------------------
Confidence 66554443333
Q ss_pred cCCCCCC-CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCC
Q 001238 261 PELGDCT-ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLT 339 (1117)
Q Consensus 261 ~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 339 (1117)
.++ +|++|+|++|++++.+|..|..++ |++|++++|++++..|..|..+++|++|+|++|.+++.+|. +..++
T Consensus 171 ----~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 171 ----SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp ----CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred ----hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 233 455666666666666666666665 66666666666666666666777777777777777655554 66667
Q ss_pred CcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhcccc-ccc
Q 001238 340 SLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNR-LEG 401 (1117)
Q Consensus 340 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~ 401 (1117)
+|++|+|++|+|++.+|..|..+++|++|++++|++++.+|.. +.+++|+.|++++|. +.|
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 7777777777777777777777777777777777777766665 667777777777776 443
No 46
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.1e-41 Score=411.76 Aligned_cols=252 Identities=21% Similarity=0.291 Sum_probs=208.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||+|++........+.+.+|+++|+.++|||||++++++.+.+..|+||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 35799999999999999999975 56999999999876666667899999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC--CcceeccccccccccCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER--YESCLADFGLARLVEDD 931 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~--~~~kl~DfGla~~~~~~ 931 (1117)
|+||+|.+++.... +.+++.++..++.||++||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+...
T Consensus 236 ~~gg~L~~~i~~~~--~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~ 310 (573)
T 3uto_A 236 MSGGELFEKVADEH--NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK 310 (573)
T ss_dssp CCCCBHHHHHTCTT--SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred cCCCcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence 99999999986542 3489999999999999999999999 99999999999999854 89999999999987542
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
. .....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+. ...+.+............
T Consensus 311 ~-----~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~-----~~~~~~~~i~~~~~~~~~--- 377 (573)
T 3uto_A 311 Q-----SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE-----NDDETLRNVKSCDWNMDD--- 377 (573)
T ss_dssp S-----EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTCCCCCS---
T ss_pred C-----ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----CHHHHHHHHHhCCCCCCc---
Confidence 1 233568999999999999999999999999999999999999999642 223333333333222211
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
......+....++++ .|++.||++||++.|+++
T Consensus 378 -~~~~~~s~~~~dli~------~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 378 -SAFSGISEDGKDFIR------KLLLADPNTRMTIHQALE 410 (573)
T ss_dssp -GGGTTSCHHHHHHHH------TTSCSSGGGSCCHHHHHH
T ss_pred -ccccCCCHHHHHHHH------HHccCChhHCcCHHHHhc
Confidence 122233444555554 499999999999999876
No 47
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=4.4e-41 Score=381.08 Aligned_cols=283 Identities=34% Similarity=0.558 Sum_probs=227.8
Q ss_pred hHHHhccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 770 SIGDATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 770 ~~~~~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++...+++|++.+.||+|+||+||+|.+.+|+.||||++........+.+.+|++++++++||||+++++++.+.+..++
T Consensus 33 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 112 (321)
T 2qkw_B 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMIL 112 (321)
T ss_dssp CCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEE
T ss_pred HHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEE
Confidence 34456789999999999999999999988899999999887666667789999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGEC-AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
||||+++|+|.+++..... ...+++.++.+++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 113 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 189 (321)
T 2qkw_B 113 IYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKG 189 (321)
T ss_dssp EEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEEC
T ss_pred EEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeeccccccc
Confidence 9999999999999976532 23489999999999999999999999 9999999999999999999999999999865
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCC-ChhHHHHHHHHHhcCCCCc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPD-GQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1007 (1117)
..... ........||+.|+|||++.+..++.++||||||+++|||++|+.||....+. ......|...... .....
T Consensus 190 ~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~ 266 (321)
T 2qkw_B 190 TELDQ--THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHN-NGQLE 266 (321)
T ss_dssp SSSSC--CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHT-TTCCC
T ss_pred ccccc--cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccc-cccHH
Confidence 43221 12233457899999999999899999999999999999999999999764432 2234444433222 22333
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
..+++.+........ ......++..|++.||++||++.++++.|+.+.+..
T Consensus 267 ~~~~~~~~~~~~~~~--~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~ 317 (321)
T 2qkw_B 267 QIVDPNLADKIRPES--LRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317 (321)
T ss_dssp SSSSSSCTTCSCHHH--HHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred HhcChhhccccCHHH--HHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence 444554443332221 222334666799999999999999999999887643
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-41 Score=402.32 Aligned_cols=364 Identities=18% Similarity=0.196 Sum_probs=196.8
Q ss_pred CCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccC-CcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEe
Q 001238 267 TELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGII-PPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQ 345 (1117)
Q Consensus 267 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 345 (1117)
++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777777666677777777777777777776443 44567777777777777777766667777777777777
Q ss_pred cccccccCccccc--ccCCCCCcEEEecCccccCCCCcc-cccccchHHHHhccccccccCCCCCCcc--cccceeeccc
Q 001238 346 LSVNQISGEIPAQ--IGNCQRLAQIELDNNQITGAIPSE-FGNLSNLTLLFVWHNRLEGEIPPSISNC--QNLEAVDLSQ 420 (1117)
Q Consensus 346 Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~Ls~ 420 (1117)
|++|.+++..+.. |.++++|++|++++|++++..|.. |.++++|++|++++|++++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777776644443 667777777777777777665654 5666666666666666666666666554 4566666666
Q ss_pred ccccCCCccc--------ccCCCCCCeeeccCccCCCCCCCCcccc---cccceeccCCCcccccCCCCcCCCCCCCEEE
Q 001238 421 NGLTGPIPRG--------IFQLKKLNKLLLLSNNLSGVIPPEMGNC---SSLIRFRANSNKLTGFIPPEIGNLKNLNFLD 489 (1117)
Q Consensus 421 N~l~~~~p~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 489 (1117)
|.+.+..+.. +..+++|++|++++|++.+..|..+... ++|+.|++++|.+.+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------- 255 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------- 255 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence 6665432222 1223344444444444444333333222 33334444333332110
Q ss_pred ccCCcCCCCCCccccc--CCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEecccccc
Q 001238 490 LGSNRLTGSIPDEITG--CRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRF 567 (1117)
Q Consensus 490 Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l 567 (1117)
+..+.+.+..+..+.+ .++|++|++++|.+.+..|..|..+++|+.|++++|+++++.+..|.++++|+.|+|++|.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 0111111122222222 23455555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcc
Q 001238 568 AGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 568 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
++..+..|..+++|+.|+|++|++++..|..+..++++ +.|+|++|+|++..+..|..+++|+.|+|++|+++|+++
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL-KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccc-cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 54445555555555555555555554444444444444 344444444443333334444444444444444444443
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-40 Score=393.49 Aligned_cols=354 Identities=19% Similarity=0.233 Sum_probs=255.0
Q ss_pred cccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcC-CccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEE
Q 001238 243 KRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSI-PSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIID 321 (1117)
Q Consensus 243 ~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~Ld 321 (1117)
++|++|++++|.+.+..|..|..+++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 55666666666666666666777777777777777665444 34566777777777777777766666777777777777
Q ss_pred cCCCcCCCCCccc--cCCCCCcceEecccccccCccccc-ccCCCCCcEEEecCccccCCCCcccccc--cchHHHHhcc
Q 001238 322 ISMNSLTGSIPQT--LGNLTSLQELQLSVNQISGEIPAQ-IGNCQRLAQIELDNNQITGAIPSEFGNL--SNLTLLFVWH 396 (1117)
Q Consensus 322 Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~ 396 (1117)
|++|.+++.+|.. |..+++|++|+|++|.+++..|.. +.++++|++|++++|++++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777776544443 666777777777777776665654 6667777777777777776666666655 5677777777
Q ss_pred ccccccCCCC--------CCcccccceeecccccccCCCcccccCC---CCCCeeeccCccCCCC----------CCCCc
Q 001238 397 NRLEGEIPPS--------ISNCQNLEAVDLSQNGLTGPIPRGIFQL---KKLNKLLLLSNNLSGV----------IPPEM 455 (1117)
Q Consensus 397 N~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~----------~~~~~ 455 (1117)
|.+.+..+.. +..+++|++|++++|++++..|..+... .+|+.|++++|.+.+. .+..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 7776544433 2355778888888888887777766554 7788888887755432 22233
Q ss_pred ccc--cccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhccccc
Q 001238 456 GNC--SSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRL 533 (1117)
Q Consensus 456 ~~l--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 533 (1117)
..+ ++|++|++++|++++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 332 578888888888888778888888888888888888887777788888888888888888887777788888888
Q ss_pred ccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccc
Q 001238 534 QFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIP 596 (1117)
Q Consensus 534 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 596 (1117)
+.|++++|+++++.+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 888888888888877788888888888888888887777777788888888888888886665
No 50
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=2.9e-40 Score=371.54 Aligned_cols=261 Identities=31% Similarity=0.458 Sum_probs=203.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
..+|++.+.||+|+||+||+|+. +|+.||||++..... ...+++.+|++++++++||||+++++++.+.+..++|||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 114 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence 45788999999999999999987 688999999875532 234578899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--eeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPA--ILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|+++|+|.+++........+++..++.++.|+++||+|||++ + |+||||||+||+++.++.+||+|||+++....
T Consensus 115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~ 191 (309)
T 3p86_A 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS 191 (309)
T ss_dssp CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC-------
T ss_pred cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCccccc
Confidence 999999999998754334489999999999999999999999 7 99999999999999999999999999986543
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. .......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+...........
T Consensus 192 ~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~-----~~~~~~~~~~~~~~~----- 257 (309)
T 3p86_A 192 TF----LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL-----NPAQVVAAVGFKCKR----- 257 (309)
T ss_dssp --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS-----CHHHHHHHHHHSCCC-----
T ss_pred cc----cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhcCCC-----
Confidence 21 2234567999999999999999999999999999999999999999642 112222222111111
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
..++...+..+.++++. ||+.+|++||++.++++.|+.+.+..
T Consensus 258 -~~~~~~~~~~l~~li~~------~l~~dP~~Rps~~~ll~~L~~~~~~~ 300 (309)
T 3p86_A 258 -LEIPRNLNPQVAAIIEG------CWTNEPWKRPSFATIMDLLRPLIKSA 300 (309)
T ss_dssp -CCCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred -CCCCccCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHHhC
Confidence 12233444555665555 99999999999999999999987653
No 51
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=4.5e-40 Score=373.77 Aligned_cols=281 Identities=39% Similarity=0.670 Sum_probs=225.1
Q ss_pred hHHHhccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCc-cchHHHHHHHHHHhccCCCCcceEEeeeecCCceE
Q 001238 770 SIGDATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDK-ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 770 ~~~~~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
++....++|++.+.||+|+||+||+|+..+|+.||||++..... .....+.+|++++++++||||+++++++.+.+..+
T Consensus 24 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~ 103 (326)
T 3uim_A 24 ELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL 103 (326)
T ss_dssp HHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCE
T ss_pred HHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceE
Confidence 66778899999999999999999999988899999999875432 23347899999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGE-CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
+||||+++|+|.+++.... ....+++..+..++.|++.||+|||+++.++|+||||||+||+++.++.+||+|||+++.
T Consensus 104 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~ 183 (326)
T 3uim_A 104 LVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL 183 (326)
T ss_dssp EEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred EEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccc
Confidence 9999999999999998753 233589999999999999999999998777999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCC---CCCChhHHHHHHHHHhcCC
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDAS---FPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~---~~~~~~~~~~~~~~~~~~~ 1004 (1117)
...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||+.. .........|+...... .
T Consensus 184 ~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-~ 259 (326)
T 3uim_A 184 MDYKDT---HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKE-K 259 (326)
T ss_dssp CCSSSS---CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSS-C
T ss_pred cCcccc---cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhc-h
Confidence 653321 2233456999999999999899999999999999999999999999631 12233444554433322 2
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhh
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREI 1056 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~ 1056 (1117)
......+......... ........++..|++.||++||++.+|++.|+..
T Consensus 260 ~~~~~~~~~~~~~~~~--~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 260 KLEALVDVDLQGNYKD--EEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp CSTTSSCTTCTTSCCH--HHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred hhhhhcChhhccccCH--HHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 2333444444433322 2223344567779999999999999999999874
No 52
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=6.7e-40 Score=366.64 Aligned_cols=253 Identities=23% Similarity=0.375 Sum_probs=208.3
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
++..++|++.+.||+|+||+||+|.. .+|+.||||++........+.+.+|+.++++++||||+++++++...+..++|
T Consensus 16 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 95 (297)
T 3fxz_A 16 GDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (297)
T ss_dssp SCGGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred CChhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence 34567899999999999999999984 57899999999876666677899999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++|+|.+++... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 96 ~e~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (297)
T 3fxz_A 96 MEYLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP 168 (297)
T ss_dssp EECCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EECCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCC
Confidence 9999999999999764 389999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. .......||+.|+|||++.+..++.++||||+||++|||++|+.||... .................
T Consensus 169 ~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~~~~~~~~~~--- 236 (297)
T 3fxz_A 169 EQ----SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE-----NPLRALYLIATNGTPEL--- 236 (297)
T ss_dssp TT----CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHHCSCCC---
T ss_pred cc----cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCCCCC---
Confidence 32 2234567999999999999999999999999999999999999999642 11122222222111110
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..+...+..+.+++.. |++.||++||++.++++
T Consensus 237 --~~~~~~~~~~~~li~~------~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 237 --QNPEKLSAIFRDFLNR------CLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp --SCGGGSCHHHHHHHHH------HSCSSTTTSCCHHHHTT
T ss_pred --CCccccCHHHHHHHHH------HccCChhHCcCHHHHhh
Confidence 1112233445555554 99999999999999976
No 53
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=370.69 Aligned_cols=263 Identities=28% Similarity=0.433 Sum_probs=211.9
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
++|.+.+.||+|+||+||+|.+ .+++.||+|++...+....+.+.+|++++++++||||+++++++.+++..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 4688899999999999999985 468999999987766666778999999999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
++|+|.+++.... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++........
T Consensus 90 ~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 164 (310)
T 3s95_A 90 KGGTLRGIIKSMD--SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQ 164 (310)
T ss_dssp TTCBHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC-----
T ss_pred CCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccccc
Confidence 9999999998643 3489999999999999999999999 9999999999999999999999999999876543221
Q ss_pred cc----------ccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 935 SF----------SANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 935 ~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
.. .......||+.|+|||++.+..++.++||||||+++|||++|..||....................
T Consensus 165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (310)
T 3s95_A 165 PEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR-- 242 (310)
T ss_dssp ---------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH--
T ss_pred ccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc--
Confidence 10 111256799999999999999999999999999999999999999865433221111111111111
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
..+...+..+.+++.. |++.||++||++.++++.|++++..
T Consensus 243 --------~~~~~~~~~l~~li~~------~l~~dP~~Rps~~~l~~~L~~l~~~ 283 (310)
T 3s95_A 243 --------YCPPNCPPSFFPITVR------CCDLDPEKRPSFVKLEHWLETLRMH 283 (310)
T ss_dssp --------TCCTTCCTTHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------cCCCCCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHHh
Confidence 1122333455555555 9999999999999999999988754
No 54
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=5e-39 Score=361.86 Aligned_cols=278 Identities=35% Similarity=0.555 Sum_probs=218.3
Q ss_pred hHHHhccCCCCC------CeeeecCCeEEEEEEcCCCcEEEEEEeecCC----ccchHHHHHHHHHHhccCCCCcceEEe
Q 001238 770 SIGDATRSLTAG------NIIGQGRSGIVYKVTLPSGLTVAVKRFRASD----KISTGAFSSEIATLSRIRHRNIVRLLG 839 (1117)
Q Consensus 770 ~~~~~~~~~~~~------~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~l~~ 839 (1117)
++..+++.|... +.||+|+||+||+|.. +++.||||++.... ....+.+.+|++++++++||||+++++
T Consensus 19 ~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~ 97 (307)
T 2nru_A 19 ELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLG 97 (307)
T ss_dssp HHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred HHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 566777777766 8999999999999987 68899999987532 223567899999999999999999999
Q ss_pred eeecCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCccee
Q 001238 840 WGANRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCL 919 (1117)
Q Consensus 840 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl 919 (1117)
++.+.+..++||||+++|+|.+++........+++..+..++.|+++||+|||++ +|+||||||+||++++++.+||
T Consensus 98 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl 174 (307)
T 2nru_A 98 FSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKI 174 (307)
T ss_dssp EECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEE
T ss_pred EEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcCCCcEEE
Confidence 9999999999999999999999998654445689999999999999999999999 9999999999999999999999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDH 999 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~ 999 (1117)
+|||+++....... ........||+.|+|||.+.+ .++.++||||||+++|||++|+.||...... .....+....
T Consensus 175 ~Dfg~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~~~~~~~ 250 (307)
T 2nru_A 175 SDFGLARASEKFAQ--TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREP-QLLLDIKEEI 250 (307)
T ss_dssp CCCTTCEECCSCSS--CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS-SBTTHHHHHH
T ss_pred eecccccccccccc--cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcch-HHHHHHHHHh
Confidence 99999987654221 122345679999999998864 5899999999999999999999999753222 2222333333
Q ss_pred HhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1000 LKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1000 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
........+.+++.+.......... ...++..|++.+|++||++.++++.|+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~---l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 251 EDEEKTIEDYIDKKMNDADSTSVEA---MYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HTTSCCHHHHSCSSCSCCCHHHHHH---HHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred hhhhhhhhhhccccccccchHHHHH---HHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 2222223334444443333222222 2245666999999999999999999998753
No 55
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=368.10 Aligned_cols=264 Identities=25% Similarity=0.410 Sum_probs=209.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC----CCcEEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP----SGLTVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~----~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.+.||+|+||+||+|.+. .+..||||+++.. .....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 357888999999999999999863 3556999999764 33345679999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.++++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 128 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 202 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHD--GQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLE 202 (325)
T ss_dssp EEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred EeeCCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence 999999999999997643 3489999999999999999999999 99999999999999999999999999998775
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
..... ........+|+.|+|||++....++.++||||||+++|||++ |+.||... ............. .
T Consensus 203 ~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~-----~~~~~~~~~~~~~-~--- 272 (325)
T 3kul_A 203 DDPDA-AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM-----TNRDVISSVEEGY-R--- 272 (325)
T ss_dssp ----C-CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS-----CHHHHHHHHHTTC-C---
T ss_pred cCccc-eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC-----CHHHHHHHHHcCC-C---
Confidence 43222 122334456889999999999999999999999999999999 99999642 1122222222211 1
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCCC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPAS 1062 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~~ 1062 (1117)
...+...+..+.+++.. ||+.||++||++.++++.|+.+.+.+.+
T Consensus 273 ---~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 273 ---LPAPMGCPHALHQLMLD------CWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp ---CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred ---CCCCCCcCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 11222334455555554 9999999999999999999999876543
No 56
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.7e-39 Score=367.73 Aligned_cols=247 Identities=23% Similarity=0.325 Sum_probs=204.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||.||+|.+ .+|+.||||++... .....+++.+|+++++.++||||+++++++...+..|+||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 45789999999999999999985 67999999999754 2334567889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 94 e~~~~~~L~~~l~~~---~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 167 (328)
T 3fe3_A 94 EYASGGEVFDYLVAH---GRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVG 167 (328)
T ss_dssp CCCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSS
T ss_pred ECCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCC
Confidence 999999999998764 3489999999999999999999999 9999999999999999999999999999876532
Q ss_pred CCCccccCCccccccccCChhhhccCCCC-cCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKIS-EKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
. .....+||+.|+|||++.+..++ .++||||+||++|||++|+.||.+. ..............
T Consensus 168 ~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~i~~~~~------ 231 (328)
T 3fe3_A 168 G-----KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ-----NLKELRERVLRGKY------ 231 (328)
T ss_dssp C-----GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------
T ss_pred C-----ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCC------
Confidence 1 23456799999999999887775 7999999999999999999999642 22333333333321
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.++...+....++++. |++.||++|||+.++++
T Consensus 232 --~~p~~~s~~~~~li~~------~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 232 --RIPFYMSTDCENLLKR------FLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp --CCCTTSCHHHHHHHHH------HCCSSTTTSCCHHHHTT
T ss_pred --CCCCCCCHHHHHHHHH------HCCCChhHCcCHHHHhc
Confidence 1222334455666655 99999999999999876
No 57
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=2.3e-39 Score=373.62 Aligned_cols=261 Identities=25% Similarity=0.377 Sum_probs=210.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc--------CCCcEEEEEEeecCC-ccchHHHHHHHHHHhcc-CCCCcceEEeeeecC
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL--------PSGLTVAVKRFRASD-KISTGAFSSEIATLSRI-RHRNIVRLLGWGANR 844 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 844 (1117)
.++|++.+.||+|+||+||+|++ .++..||||+++... ....+++.+|+++++++ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 35788899999999999999974 245689999997653 23346789999999999 899999999999999
Q ss_pred CceEEEEEecCCCChhhhhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE
Q 001238 845 KTKLLFYDYMPNGTLGMLLHDGEC-------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL 911 (1117)
Q Consensus 845 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill 911 (1117)
+..|+||||+++|+|.+++..... ...+++.+++.++.||++||+|||++ +|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEE
Confidence 999999999999999999976432 13478999999999999999999999 99999999999999
Q ss_pred cCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCCh
Q 001238 912 GERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQ 990 (1117)
Q Consensus 912 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~ 990 (1117)
+.++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.... ..
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~--~~ 312 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDY--YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VE 312 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCT--TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GG
T ss_pred CCCCCEEEccccCCcccCcccc--eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC--HH
Confidence 9999999999999987654321 122334567889999999999999999999999999999999 999997532 22
Q ss_pred hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
.....+ ..... +..+...+..+.+++.. ||+.+|++||++.++++.|+++..
T Consensus 313 ~~~~~~----~~~~~------~~~~~~~~~~l~~li~~------~l~~dP~~Rpt~~ell~~L~~il~ 364 (370)
T 2psq_A 313 ELFKLL----KEGHR------MDKPANCTNELYMMMRD------CWHAVPSQRPTFKQLVEDLDRILT 364 (370)
T ss_dssp GHHHHH----HTTCC------CCCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHH----hcCCC------CCCCCCCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHH
Confidence 222222 11111 12233344455555555 999999999999999999998764
No 58
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=368.44 Aligned_cols=251 Identities=22% Similarity=0.302 Sum_probs=198.1
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
..++|++.+.||+|+||+||+|.. .+|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 456899999999999999999974 579999999997643 233457899999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||++......
T Consensus 88 E~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 161 (347)
T 3zgw_A 88 EYCPGGELFDYIISQ---DRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGN 161 (347)
T ss_dssp ECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC----
T ss_pred eCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccCC
Confidence 999999999998754 3489999999999999999999999 9999999999999999999999999999865432
Q ss_pred CCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
. .......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||... ..............
T Consensus 162 ~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~------ 227 (347)
T 3zgw_A 162 K---DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDD-----NVMALYKKIMRGKY------ 227 (347)
T ss_dssp -------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCC------
T ss_pred C---CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHcCCC------
Confidence 1 122345679999999999988775 88999999999999999999999642 23333333333322
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
.++...+....++++. |++.||++|||+.|+++.
T Consensus 228 --~~p~~~s~~~~~li~~------~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 228 --DVPKWLSPSSILLLQQ------MLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp --CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHTC
T ss_pred --CCCCCCCHHHHHHHHH------HcccCHhHCcCHHHHhcC
Confidence 1223344455555555 999999999999999874
No 59
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=4.6e-39 Score=354.69 Aligned_cols=257 Identities=28% Similarity=0.465 Sum_probs=211.9
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecC
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMP 855 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 855 (1117)
++|++.+.||+|+||+||+|.+.+++.||+|++.... ...+++.+|++++++++||||+++++++.+.+..++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence 4688889999999999999998889999999998643 345689999999999999999999999999999999999999
Q ss_pred CCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCc
Q 001238 856 NGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGS 935 (1117)
Q Consensus 856 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~ 935 (1117)
+++|.+++.... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++..... .
T Consensus 89 ~~~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~---~ 160 (269)
T 4hcu_A 89 HGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD---Q 160 (269)
T ss_dssp TCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH---H
T ss_pred CCcHHHHHHhcC--cccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccccccc---c
Confidence 999999997643 3489999999999999999999999 9999999999999999999999999999866432 1
Q ss_pred cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCccc
Q 001238 936 FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKL 1014 (1117)
Q Consensus 936 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1014 (1117)
........+|+.|+|||++....++.++||||+|+++|||++ |+.||... .............. +..
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~-----~~~~~~~~~~~~~~-------~~~ 228 (269)
T 4hcu_A 161 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDISTGFR-------LYK 228 (269)
T ss_dssp HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTTCC-------CCC
T ss_pred cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHHhcCcc-------CCC
Confidence 223334567889999999999999999999999999999999 99999642 12222222222111 111
Q ss_pred CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1015 QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1015 ~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
+...+..+.++++. |++.+|++||++.++++.|+++.+.
T Consensus 229 ~~~~~~~~~~li~~------~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 229 PRLASTHVYQIMNH------CWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp CTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHH------HccCCcccCcCHHHHHHHHHHHHHc
Confidence 22334455555555 9999999999999999999998754
No 60
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=3.3e-39 Score=361.09 Aligned_cols=268 Identities=26% Similarity=0.409 Sum_probs=207.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-----CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeec--CCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-----PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGAN--RKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~--~~~~ 847 (1117)
.++|++.+.||+|+||+||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 35788999999999999999973 3688999999987666666789999999999999999999998854 3568
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||+++|+|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~ 163 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKV 163 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCG--GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred EEEEEeCCCCCHHHHHHhcc--cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCccccc
Confidence 99999999999999997653 3489999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCC----------CCChhHHHHHH
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASF----------PDGQHVIQWVR 997 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~----------~~~~~~~~~~~ 997 (1117)
...... .........+|..|+|||.+.+..++.++||||||+++|||++|..||.... .........+.
T Consensus 164 ~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 164 LPQDKE-FFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred ccCCcc-eeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHH
Confidence 654321 1122334567888999999999999999999999999999999999986421 11111111222
Q ss_pred HHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 998 DHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 998 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
........ ...+...+..+.++++. ||+.||++||++.++++.|+++.+..
T Consensus 243 ~~~~~~~~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 243 ELLKNNGR------LPRPDGCPDEIYMIMTE------CWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHHHTTCC------CCCCTTCCHHHHHHHHH------HSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHhccCc------CCCCcCcCHHHHHHHHH------HcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 22222211 11223344455655555 99999999999999999999987653
No 61
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.9e-39 Score=364.16 Aligned_cols=264 Identities=26% Similarity=0.377 Sum_probs=201.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhc--cCCCCcceEEeeeec----CCceE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSR--IRHRNIVRLLGWGAN----RKTKL 848 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~----~~~~~ 848 (1117)
.++|++.+.||+|+||+||+|+. +|+.||||++... ....+.+|.+++.. ++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 45799999999999999999988 7899999998653 33456667776666 799999999998654 34578
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHh--------ccCCCceeeeccccCeEEEcCCCcceec
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLH--------HDCVPAILHRDVKSHNILLGERYESCLA 920 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivHrDlkp~Nill~~~~~~kl~ 920 (1117)
+||||+++|+|.++++.. .+++..+.+++.|+++||+||| ++ +|+||||||+||+++.++.+||+
T Consensus 83 lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~ 155 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIA 155 (301)
T ss_dssp EEECCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEEC
T ss_pred EehhhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEe
Confidence 999999999999999653 3899999999999999999999 77 99999999999999999999999
Q ss_pred cccccccccCCCCCccccCCccccccccCChhhhccC------CCCcCCCeeehhhhHHHHHhC----------CCCCCC
Q 001238 921 DFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT------KISEKSDVYSYGVVLLEIITG----------KKPVDA 984 (1117)
Q Consensus 921 DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~vl~ell~g----------~~P~~~ 984 (1117)
|||+++.................||+.|+|||++.+. .++.++|||||||++|||++| +.||..
T Consensus 156 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~ 235 (301)
T 3q4u_A 156 DLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYD 235 (301)
T ss_dssp CCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred eCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccc
Confidence 9999987665433222233455899999999999876 556799999999999999999 888865
Q ss_pred CCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhh
Q 001238 985 SFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREI 1056 (1117)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~ 1056 (1117)
............. .......................+. +++..||+.||++||++.+|++.|+++
T Consensus 236 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~------~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 236 VVPNDPSFEDMRK-VVCVDQQRPNIPNRWFSDPTLTSLA------KLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TSCSSCCHHHHHH-HHTTSCCCCCCCGGGGGSHHHHHHH------HHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCCCcchhhhhH-HHhccCCCCCCChhhccCccHHHHH------HHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 4444333333222 2222111111100001111112233 355569999999999999999999875
No 62
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=2.7e-39 Score=373.19 Aligned_cols=263 Identities=23% Similarity=0.417 Sum_probs=198.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC----CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP----SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
..+|++.+.||+|+||+||+|+.. ++..||||+++... ....++|.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 357999999999999999999864 57789999997642 3345679999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.++++... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 124 v~e~~~~~sL~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 198 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHD--AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLE 198 (373)
T ss_dssp EEECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence 999999999999998643 3489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
...... .......+|+.|+|||++....++.++||||||+++|||++ |+.||... .. .+......... .
T Consensus 199 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~--~~---~~~~~~i~~~~-~--- 268 (373)
T 2qol_A 199 DDPEAA-YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM--SN---QDVIKAVDEGY-R--- 268 (373)
T ss_dssp ----------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC--CH---HHHHHHHHTTE-E---
T ss_pred cCCccc-eeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC--CH---HHHHHHHHcCC-C---
Confidence 432111 11222345788999999999999999999999999999998 99999642 11 12222221111 0
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
...+...+..+.+++. .||+.||++||++.+|++.|+++.+.+.
T Consensus 269 ---~~~~~~~~~~l~~li~------~cl~~dp~~RPs~~~i~~~L~~~~~~~~ 312 (373)
T 2qol_A 269 ---LPPPMDCPAALYQLML------DCWQKDRNNRPKFEQIVSILDKLIRNPG 312 (373)
T ss_dssp ---CCCCTTCBHHHHHHHH------HHTCSSGGGSCCHHHHHHHHHHHHHCGG
T ss_pred ---CCCCccccHHHHHHHH------HHhCcChhhCcCHHHHHHHHHHHHhCcc
Confidence 1112233344555544 4999999999999999999999876543
No 63
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=7.8e-39 Score=352.69 Aligned_cols=258 Identities=24% Similarity=0.384 Sum_probs=211.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.++|++.+.||+|+||+||+|+..++..||+|+++.... ..+++.+|++++++++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 357889999999999999999988888999999976533 4567999999999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
++++|.+++.... ..+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 86 ~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-- 158 (268)
T 3sxs_A 86 SNGCLLNYLRSHG--KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-- 158 (268)
T ss_dssp TTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC--
T ss_pred CCCcHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhh--
Confidence 9999999997642 3489999999999999999999999 99999999999999999999999999998765422
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
........+|+.|+|||.+....++.++||||+|+++|||++ |+.||... .............. ..
T Consensus 159 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~-------~~ 225 (268)
T 3sxs_A 159 -YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLY-----TNSEVVLKVSQGHR-------LY 225 (268)
T ss_dssp -EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTS-----CHHHHHHHHHTTCC-------CC
T ss_pred -hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcccc-----ChHHHHHHHHcCCC-------CC
Confidence 223334567788999999999999999999999999999999 99999642 11222222222211 11
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.+...+..+.+++.. |++.+|++||++.++++.|+.++++
T Consensus 226 ~~~~~~~~l~~li~~------~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 226 RPHLASDTIYQIMYS------CWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp CCTTSCHHHHHHHHH------TTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred CCCcChHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHhhhc
Confidence 122233455555554 9999999999999999999998764
No 64
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1.2e-39 Score=369.21 Aligned_cols=270 Identities=28% Similarity=0.397 Sum_probs=205.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCc----eEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT----KLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~----~~lv 850 (1117)
.++|++.+.||+|+||+||+|++. ++.||||++..... ....+.+|+.++++++|||||++++++..... .++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 357889999999999999999874 78999999975432 33456779999999999999999999887543 6999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC-------CCceeeeccccCeEEEcCCCcceecccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDC-------VPAILHRDVKSHNILLGERYESCLADFG 923 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-------~~~ivHrDlkp~Nill~~~~~~kl~DfG 923 (1117)
|||+++|+|.++++.. .+++..+..++.|+++||+|||+.. .++|+||||||+||+++.++.+||+|||
T Consensus 101 ~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg 176 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFG 176 (322)
T ss_dssp EECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCT
T ss_pred EecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCC
Confidence 9999999999999764 2899999999999999999999861 3489999999999999999999999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhcc-----CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCCh--------
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-----TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQ-------- 990 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~-------- 990 (1117)
+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 177 ~a~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~ 254 (322)
T 3soc_A 177 LALKFEAGKS--AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG 254 (322)
T ss_dssp TCEEECTTSC--CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHC
T ss_pred cccccccccC--ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhc
Confidence 9987654322 122344679999999999876 3567789999999999999999999976432211
Q ss_pred ---hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 991 ---HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 991 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
....+......... .+.+....... ........++..||+.||++|||+.++++.|+++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 255 QHPSLEDMQEVVVHKKK------RPVLRDYWQKH-AGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp SSCCHHHHHHHHTTSCC------CCCCCGGGGSS-HHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCchhhhhhhhhcccC------CCCcccccccc-chHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 11222222211111 11111111100 1111223455569999999999999999999988753
No 65
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9.5e-39 Score=356.83 Aligned_cols=264 Identities=22% Similarity=0.381 Sum_probs=207.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc---cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK---ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||+||+|.. .+++.||+|++..... ...+++.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 35789999999999999999974 4689999999865432 2345788999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++++|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 90 ~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 163 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH---GPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE 163 (294)
T ss_dssp EECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC--
T ss_pred EeCCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccc
Confidence 9999999999999764 3489999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. ........||+.|+|||++.+..++.++||||+|+++|||++|+.||... ............... ..
T Consensus 164 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~~~~~~~~~~~~~---~~ 232 (294)
T 4eqm_A 164 TS---LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE-----TAVSIAIKHIQDSVP---NV 232 (294)
T ss_dssp --------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSS-----CHHHHHHHHHSSCCC---CH
T ss_pred cc---ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhhccCC---Cc
Confidence 21 12233467999999999999999999999999999999999999999642 122222222222211 11
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-CHHHHHHHHHhhhcCCC
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-TMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-s~~~v~~~L~~~~~~~~ 1061 (1117)
.+......+..+.+++.. |++.||++|| +++++.+.|+.+..+..
T Consensus 233 ~~~~~~~~~~~l~~li~~------~l~~dp~~R~~~~~~l~~~l~~~~~~~~ 278 (294)
T 4eqm_A 233 TTDVRKDIPQSLSNVILR------ATEKDKANRYKTIQEMKDDLSSVLHENR 278 (294)
T ss_dssp HHHSCTTSCHHHHHHHHH------HSCSSGGGSCSSHHHHHHHHHTSSSSSS
T ss_pred chhcccCCCHHHHHHHHH------HhcCCHhHccccHHHHHHHHHHHHhhcc
Confidence 122233344455555554 9999999999 99999999998765544
No 66
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=6.5e-39 Score=364.70 Aligned_cols=266 Identities=17% Similarity=0.245 Sum_probs=210.8
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||++..... .+.+.+|+++++++ +||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 35788999999999999999984 5789999999875432 35689999999999 99999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc-----ceecccccccc
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE-----SCLADFGLARL 927 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~-----~kl~DfGla~~ 927 (1117)
|+ +++|.+++.... +.+++.+++.++.|+++||+|||++ +|+||||||+||+++.++. +||+|||+++.
T Consensus 86 ~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~ 159 (330)
T 2izr_A 86 LL-GPSLEDLFDLCD--RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE 159 (330)
T ss_dssp CC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred eC-CCCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence 99 999999998642 3499999999999999999999999 9999999999999998887 99999999987
Q ss_pred ccCCCCCc---cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC-
Q 001238 928 VEDDSGGS---FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK- 1003 (1117)
Q Consensus 928 ~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~- 1003 (1117)
........ ........||+.|+|||++.+..++.++|||||||++|||++|+.||..... ....+.+.......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~--~~~~~~~~~i~~~~~ 237 (330)
T 2izr_A 160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA--DTLKERYQKIGDTKR 237 (330)
T ss_dssp SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC--SSHHHHHHHHHHHHH
T ss_pred eecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccc--ccHHHHHHHHHhhhc
Confidence 65433221 1123467899999999999999999999999999999999999999976422 22222222221111
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
..+.+. +....+ .+.++++ .|++.+|.+||++++|.+.|+++.....
T Consensus 238 ~~~~~~----~~~~~p-~~~~li~------~~l~~~p~~RP~~~~l~~~l~~~~~~~~ 284 (330)
T 2izr_A 238 ATPIEV----LCENFP-EMATYLR------YVRRLDFFEKPDYDYLRKLFTDLFDRKG 284 (330)
T ss_dssp HSCHHH----HTTTCH-HHHHHHH------HHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHH----HhccCh-HHHHHHH------HHHhCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 011111 112222 4444444 4999999999999999999998865443
No 67
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=4e-39 Score=364.69 Aligned_cols=253 Identities=24% Similarity=0.326 Sum_probs=200.3
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc-cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK-ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
++|++.+.||+|+||+||+|... +++.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 57899999999999999999754 789999999875432 2346789999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
+++|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 87 ~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~- 159 (323)
T 3tki_A 87 CSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN- 159 (323)
T ss_dssp CTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT-
T ss_pred CCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCC-
Confidence 9999999999764 3489999999999999999999999 99999999999999999999999999998764322
Q ss_pred CccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.........||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+. ...... +
T Consensus 160 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~----~~~~~~-----~ 229 (323)
T 3tki_A 160 -RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK----EKKTYL-----N 229 (323)
T ss_dssp -EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHH----TTCTTS-----T
T ss_pred -cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHh----cccccC-----C
Confidence 1122345689999999999987775 7899999999999999999999976433322222221 111110 0
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
. ....+..+.++++. |++.||++||++.|+++.
T Consensus 230 ~-~~~~~~~~~~li~~------~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 230 P-WKKIDSAPLALLHK------ILVENPSARITIPDIKKD 262 (323)
T ss_dssp T-GGGSCHHHHHHHHH------HSCSSTTTSCCHHHHTTC
T ss_pred c-cccCCHHHHHHHHH------HccCChhhCcCHHHHhhC
Confidence 0 11223344454444 999999999999998763
No 68
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=358.66 Aligned_cols=261 Identities=28% Similarity=0.436 Sum_probs=202.1
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecC
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMP 855 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 855 (1117)
++|++.+.||+|+||+||+|++ .++.||||++... ...+.|.+|++++++++||||+++++++.+ ..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCC
Confidence 4688889999999999999987 4789999998643 345679999999999999999999998874 5799999999
Q ss_pred CCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc-ceeccccccccccCCCCC
Q 001238 856 NGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE-SCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 856 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~-~kl~DfGla~~~~~~~~~ 934 (1117)
+|+|.+++........+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++.....
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~--- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH--- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---
Confidence 9999999987654445789999999999999999999932229999999999999998886 799999999765421
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCccc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKL 1014 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1014 (1117)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||...... ............ . +..
T Consensus 160 ----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~---~~~~~~~~~~~~-~------~~~ 225 (307)
T 2eva_A 160 ----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGP---AFRIMWAVHNGT-R------PPL 225 (307)
T ss_dssp ---------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSS---HHHHHHHHHTTC-C------CCC
T ss_pred ----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCcc---HHHHHHHHhcCC-C------CCc
Confidence 22346899999999999999999999999999999999999999753221 112222211111 1 122
Q ss_pred CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCCCCC
Q 001238 1015 QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPASGS 1064 (1117)
Q Consensus 1015 ~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~~~~ 1064 (1117)
....+..+.+++.. |++.||++||++.++++.|+.+.+......
T Consensus 226 ~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~~L~~~~~~~~~~~ 269 (307)
T 2eva_A 226 IKNLPKPIESLMTR------CWSKDPSQRPSMEEIVKIMTHLMRYFPGAD 269 (307)
T ss_dssp BTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHGGGCCCTT
T ss_pred ccccCHHHHHHHHH------HhcCChhhCcCHHHHHHHHHHHHHhccCCC
Confidence 23334455555554 999999999999999999999876554433
No 69
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=9.2e-39 Score=362.70 Aligned_cols=247 Identities=21% Similarity=0.276 Sum_probs=204.9
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||+||+|+.+ +|+.||+|+++.. .....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 46888999999999999999854 6899999999753 2334567889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 85 EYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp ECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred eCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 999999999998754 3489999999999999999999999 9999999999999999999999999999864322
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||... ..............
T Consensus 159 ~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~------- 222 (337)
T 1o6l_A 159 G----ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHERLFELILMEEI------- 222 (337)
T ss_dssp T----CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-------
T ss_pred C----CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-----CHHHHHHHHHcCCC-------
Confidence 1 1234568999999999999999999999999999999999999999642 22223333333221
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-----CHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-----TMKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-----s~~~v~~ 1051 (1117)
.++...+..+.++++. |++.||++|| ++.++++
T Consensus 223 -~~p~~~s~~~~~li~~------lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 223 -RFPRTLSPEAKSLLAG------LLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp -CCCTTSCHHHHHHHHH------HTCSSTTTSTTCSTTTHHHHHT
T ss_pred -CCCCCCCHHHHHHHHH------HhhcCHHHhcCCCCCCHHHHHc
Confidence 2233445566666665 9999999999 8999876
No 70
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=2.4e-38 Score=358.10 Aligned_cols=247 Identities=22% Similarity=0.354 Sum_probs=203.4
Q ss_pred CCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecCC
Q 001238 778 LTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMPN 856 (1117)
Q Consensus 778 ~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 856 (1117)
|+..+.||+|+||.||+|... +|+.||||++........+.+.+|++++++++||||+++++++...+..++||||+++
T Consensus 47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 126 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQG 126 (321)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred hhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCC
Confidence 666779999999999999865 7999999999877666677899999999999999999999999999999999999999
Q ss_pred CChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCcc
Q 001238 857 GTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSF 936 (1117)
Q Consensus 857 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 936 (1117)
|+|.+++... .+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 127 ~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~---- 195 (321)
T 2c30_A 127 GALTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV---- 195 (321)
T ss_dssp CBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS----
T ss_pred CCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeeeecccCc----
Confidence 9999998753 389999999999999999999999 99999999999999999999999999998765432
Q ss_pred ccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCC
Q 001238 937 SANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQG 1016 (1117)
Q Consensus 937 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1016 (1117)
.......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+......... .+.. ....
T Consensus 196 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~-----~~~~~~~~~~~~~-~~~~----~~~~ 265 (321)
T 2c30_A 196 PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD-----SPVQAMKRLRDSP-PPKL----KNSH 265 (321)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSS-CCCC----TTGG
T ss_pred cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhcCC-CCCc----Cccc
Confidence 1234567999999999999999999999999999999999999999642 1122222222221 1100 0011
Q ss_pred CCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1017 HPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1017 ~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..+..+.+++.. |++.||++||++.++++
T Consensus 266 ~~~~~l~~li~~------~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 266 KVSPVLRDFLER------MLVRDPQERATAQELLD 294 (321)
T ss_dssp GSCHHHHHHHHH------HSCSSTTTSCCHHHHHT
T ss_pred cCCHHHHHHHHH------HccCChhhCcCHHHHhc
Confidence 223345555554 99999999999999987
No 71
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2e-38 Score=363.24 Aligned_cols=252 Identities=23% Similarity=0.340 Sum_probs=206.1
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc------chHHHHHHHHHHhccCCCCcceEEeeeecCCc
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI------STGAFSSEIATLSRIRHRNIVRLLGWGANRKT 846 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 846 (1117)
..+.|++.+.||+|+||+||+|... +|+.||+|+++..... ..+.+.+|++++++++||||+++++++.+.+.
T Consensus 10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~ 89 (361)
T 2yab_A 10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD 89 (361)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence 3467899999999999999999854 6899999999764321 34679999999999999999999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC----cceeccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY----ESCLADF 922 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~----~~kl~Df 922 (1117)
.++||||+++|+|.+++... +.+++..+..++.||+.||+|||++ +|+||||||+||+++.++ .+||+||
T Consensus 90 ~~lv~e~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DF 163 (361)
T 2yab_A 90 VVLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF 163 (361)
T ss_dssp EEEEEECCCSCBHHHHHTTC---SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred EEEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEec
Confidence 99999999999999999764 3489999999999999999999999 999999999999998876 7999999
Q ss_pred cccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhc
Q 001238 923 GLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKS 1002 (1117)
Q Consensus 923 Gla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~ 1002 (1117)
|+++...... ......||+.|+|||++....++.++||||+||++|||++|+.||.+. ...+........
T Consensus 164 G~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~-----~~~~~~~~i~~~ 233 (361)
T 2yab_A 164 GLAHEIEDGV-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANITAV 233 (361)
T ss_dssp SSCEECCTTC-----CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTT
T ss_pred CCceEcCCCC-----ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhc
Confidence 9998765421 234567999999999999999999999999999999999999999642 222333333332
Q ss_pred CCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1003 KKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1003 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.... ++......+....++++. |+..||++||++.++++
T Consensus 234 ~~~~----~~~~~~~~s~~~~~li~~------~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 234 SYDF----DEEFFSQTSELAKDFIRK------LLVKETRKRLTIQEALR 272 (361)
T ss_dssp CCCC----CHHHHTTSCHHHHHHHHH------HSCSSTTTSCCHHHHHT
T ss_pred CCCC----CchhccCCCHHHHHHHHH------HCCCChhHCcCHHHHhc
Confidence 2211 122223334455555555 99999999999999875
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.6e-38 Score=370.82 Aligned_cols=357 Identities=20% Similarity=0.231 Sum_probs=220.9
Q ss_pred CccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCc
Q 001238 91 PTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLS 170 (1117)
Q Consensus 91 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~ 170 (1117)
+..++.+++|++|++++|++++ +| .++.+++|++|+|++|++++ +| ++.+++|++|+|++|++++ +| +++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCC
Confidence 3445555666666666666654 34 45666666666666666653 33 5555666666666666554 23 55566
Q ss_pred CCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeec
Q 001238 171 SLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAI 250 (1117)
Q Consensus 171 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l 250 (1117)
+|++|++++|++++ +| ++.+ ++|++|++++|.+++. .++.+++|++|++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l-------------------------~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l 155 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQN-------------------------PLLTYLNCARNTLTEI---DVSHNTQLTELDC 155 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTC-------------------------TTCCEEECTTSCCSCC---CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCe-ec--CCCC-------------------------CcCCEEECCCCcccee---ccccCCcCCEEEC
Confidence 66666666665554 22 4444 4444444444444442 1555566666666
Q ss_pred ccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCC
Q 001238 251 YTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGS 330 (1117)
Q Consensus 251 ~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 330 (1117)
++|...+.+ .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++. .++.+++|++|++++|++++
T Consensus 156 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 666544444 36677777777777777775 44 67777777777777777754 37777777777777777775
Q ss_pred CccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcc
Q 001238 331 IPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNC 410 (1117)
Q Consensus 331 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 410 (1117)
+| ++.+++|++|++++|++++.. ++.+++|+.|++++|+ |+.|++++|.+.+.+| +..+
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTC
T ss_pred cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--cccc
Confidence 45 677777777777777777543 4456677777766653 4456667777666665 4566
Q ss_pred cccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEc
Q 001238 411 QNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDL 490 (1117)
Q Consensus 411 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 490 (1117)
++|+.|++++|.+.+.+|. ....|+.|++++| ++|++|++++|++++. .++++++|+.|++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l 346 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSC 346 (457)
T ss_dssp TTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEEC
T ss_pred ccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEEC
Confidence 7777777777776665553 2344444444443 5667777777777763 2667777777777
Q ss_pred cCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCC
Q 001238 491 GSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLS 548 (1117)
Q Consensus 491 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 548 (1117)
++|+|++ ++.|..|++++|.+.|. ..+..|+.+++++|++++..|
T Consensus 347 ~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 347 VNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred CCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 7777764 24556666777776654 244556666666666664433
No 73
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=5.1e-39 Score=372.13 Aligned_cols=260 Identities=25% Similarity=0.379 Sum_probs=208.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|.+. +++.||||+++... ....++|.+|++++++++||||+++++++...+..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 356888999999999999999865 78999999987542 2234568899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++|+|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 193 ~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~ 267 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV 267 (377)
T ss_dssp CCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSE
T ss_pred cCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCc
Confidence 999999999997542 3489999999999999999999999 99999999999999999999999999998654311
Q ss_pred CCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
.........+++.|+|||++....++.++|||||||++|||++ |+.||... ..... ...+......
T Consensus 268 --~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~--~~~~~----~~~~~~~~~~----- 334 (377)
T 3cbl_A 268 --YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNL--SNQQT----REFVEKGGRL----- 334 (377)
T ss_dssp --EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTS--CHHHH----HHHHHTTCCC-----
T ss_pred --eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHH----HHHHHcCCCC-----
Confidence 1111123346788999999998999999999999999999998 99999642 11112 2222222111
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
..+...+..+.+++.. ||+.||++||++.++++.|+++.+.
T Consensus 335 -~~~~~~~~~l~~li~~------cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 335 -PCPELCPDAVFRLMEQ------CWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp -CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -CCCCCCCHHHHHHHHH------HcCCCchhCcCHHHHHHHHHHHHhh
Confidence 1122334455555554 9999999999999999999988653
No 74
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=358.51 Aligned_cols=272 Identities=22% Similarity=0.275 Sum_probs=209.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCC--ceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRK--TKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~--~~~lv 850 (1117)
.++|++.+.||+|+||+||+|... +|+.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 357899999999999999999864 58999999997543 334567889999999999999999999987665 77999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE----cCCCcceeccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL----GERYESCLADFGLAR 926 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill----~~~~~~kl~DfGla~ 926 (1117)
|||+++|+|.+++........+++.+++.++.|+++||+|||++ +|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 99999999999998765444589999999999999999999999 99999999999999 788889999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhc--------cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHH
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYAN--------MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||..... .....+.+..
T Consensus 165 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-~~~~~~~~~~ 238 (319)
T 4euu_A 165 ELEDDE-----QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEG-PRRNKEVMYK 238 (319)
T ss_dssp ECCTTC-----CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTC-GGGCHHHHHH
T ss_pred ecCCCC-----ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc-cchhHHHHHH
Confidence 765432 223457999999999886 57889999999999999999999999964322 2223333444
Q ss_pred HHhcCCCCc-cc----------cCcccCC--CCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhh
Q 001238 999 HLKSKKDPV-EV----------LDPKLQG--HPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIR 1057 (1117)
Q Consensus 999 ~~~~~~~~~-~~----------~~~~l~~--~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~ 1057 (1117)
.....+... .. ..+.++. .....+...+ ..++..|++.||++||+++|+++...+..
T Consensus 239 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~~L~~dP~~R~s~~ell~h~~d~~ 308 (319)
T 4euu_A 239 IITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLL--TPVLANILEADQEKCWGFDQFFAETSDIL 308 (319)
T ss_dssp HHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHH--HHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred HhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHh--HHHHHHhccCChhhhccHHHhhhccHHHh
Confidence 333322110 00 0001111 1112222222 23555699999999999999999887654
No 75
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=8.9e-39 Score=368.34 Aligned_cols=264 Identities=26% Similarity=0.379 Sum_probs=209.1
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc------CCCcEEEEEEeecCC-ccchHHHHHHHHHHhcc-CCCCcceEEeeeecC
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL------PSGLTVAVKRFRASD-KISTGAFSSEIATLSRI-RHRNIVRLLGWGANR 844 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 844 (1117)
...++|++.+.||+|+||.||+|++ .+++.||||+++... ....+.+.+|+++++++ +||||+++++++.+.
T Consensus 19 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~ 98 (359)
T 3vhe_A 19 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP 98 (359)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred ccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecC
Confidence 3457899999999999999999962 356899999997643 23345789999999999 799999999998876
Q ss_pred Cc-eEEEEEecCCCChhhhhcCCCC-------------------------------------------------------
Q 001238 845 KT-KLLFYDYMPNGTLGMLLHDGEC------------------------------------------------------- 868 (1117)
Q Consensus 845 ~~-~~lv~e~~~~gsL~~~l~~~~~------------------------------------------------------- 868 (1117)
+. .++||||+++|+|.++++....
T Consensus 99 ~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (359)
T 3vhe_A 99 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEE 178 (359)
T ss_dssp TSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------------------
T ss_pred CCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhh
Confidence 54 8999999999999999976532
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCccccCC
Q 001238 869 --------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSFSANP 940 (1117)
Q Consensus 869 --------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~ 940 (1117)
...+++..++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++....... .....
T Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~--~~~~~ 253 (359)
T 3vhe_A 179 EEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD--YVRKG 253 (359)
T ss_dssp -----CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT--CEEC-
T ss_pred cccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccccc--chhcc
Confidence 12288999999999999999999999 999999999999999999999999999987654322 23344
Q ss_pred ccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCc
Q 001238 941 QFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPD 1019 (1117)
Q Consensus 941 ~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1019 (1117)
...||+.|+|||++.+..++.++||||||+++|||++ |+.||...... ...... ...... ...+...+
T Consensus 254 ~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~-~~~~~~----~~~~~~------~~~~~~~~ 322 (359)
T 3vhe_A 254 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID-EEFCRR----LKEGTR------MRAPDYTT 322 (359)
T ss_dssp -CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS-HHHHHH----HHHTCC------CCCCTTCC
T ss_pred ccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchh-HHHHHH----HHcCCC------CCCCCCCC
Confidence 5678999999999999999999999999999999998 99999753222 222222 222111 11222334
Q ss_pred hhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1020 TQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1020 ~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
..+.+++. .|++.||++||++.++++.|+++.+
T Consensus 323 ~~l~~li~------~~l~~dP~~Rps~~ell~~L~~~~~ 355 (359)
T 3vhe_A 323 PEMYQTML------DCWHGEPSQRPTFSELVEHLGNLLQ 355 (359)
T ss_dssp HHHHHHHH------HHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHccCChhhCCCHHHHHHHHHHHHH
Confidence 44555544 4999999999999999999998764
No 76
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=2e-38 Score=352.41 Aligned_cols=258 Identities=24% Similarity=0.393 Sum_probs=208.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.++|++.+.||+|+||+||+|++.+++.||+|+++... ...+++.+|++++++++||||+++++++.+.+..++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence 45788899999999999999998888899999998643 34578999999999999999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
++++|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 102 ~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~--- 173 (283)
T 3gen_A 102 ANGCLLNYLREMR--HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD--- 173 (283)
T ss_dssp TTCBHHHHHHCGG--GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH---
T ss_pred CCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccccccccccc---
Confidence 9999999997642 3489999999999999999999999 9999999999999999999999999999876432
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
.........+|+.|+|||++....++.++||||+|+++|||++ |+.||.... ............. ..
T Consensus 174 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~-----~~~~~~~~~~~~~-------~~ 241 (283)
T 3gen_A 174 EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT-----NSETAEHIAQGLR-------LY 241 (283)
T ss_dssp HHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC-----HHHHHHHHHTTCC-------CC
T ss_pred ccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC-----hhHHHHHHhcccC-------CC
Confidence 1222334467889999999998999999999999999999998 999996421 1122222222111 11
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.+...+..+.+++.. |++.+|++||++.++++.|+++..+
T Consensus 242 ~~~~~~~~l~~li~~------~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 242 RPHLASEKVYTIMYS------CWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp CCTTCCHHHHHHHHH------TTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHH------HccCChhHCcCHHHHHHHHHHHhhc
Confidence 122334455555554 9999999999999999999988654
No 77
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-38 Score=363.18 Aligned_cols=264 Identities=27% Similarity=0.389 Sum_probs=210.5
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC------CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCc
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP------SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT 846 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 846 (1117)
..++|++.+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|++++++++||||+++++++.+.+.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 4578999999999999999999863 35899999997643 2335678999999999999999999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCC---------------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGEC---------------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVK 905 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlk 905 (1117)
.++||||+++|+|.+++..... ...+++.+++.++.||++||+|||++ +|+|||||
T Consensus 125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlk 201 (343)
T 1luf_A 125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLA 201 (343)
T ss_dssp CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCC
Confidence 9999999999999999976421 14589999999999999999999999 99999999
Q ss_pred cCeEEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCC
Q 001238 906 SHNILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDA 984 (1117)
Q Consensus 906 p~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~ 984 (1117)
|+||+++.++.+||+|||+++...... .........+|+.|+|||++....++.++||||||+++|||++ |+.||..
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSAD--YYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGG--CBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred cceEEECCCCeEEEeecCCCcccccCc--cccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999998764321 1122334568999999999999999999999999999999999 9999964
Q ss_pred CCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 985 SFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
. ...+......... . +..+...+..+.++++. ||+.||++||++.++++.|+++.+..
T Consensus 280 ~-----~~~~~~~~~~~~~-~------~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~~~~~L~~~~~~~ 337 (343)
T 1luf_A 280 M-----AHEEVIYYVRDGN-I------LACPENCPLELYNLMRL------CWSKLPADRPSFCSIHRILQRMCERA 337 (343)
T ss_dssp S-----CHHHHHHHHHTTC-C------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred C-----ChHHHHHHHhCCC-c------CCCCCCCCHHHHHHHHH------HcccCcccCCCHHHHHHHHHHHHhhh
Confidence 2 1122222222211 1 11223344455555555 99999999999999999999987643
No 78
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=366.49 Aligned_cols=264 Identities=26% Similarity=0.357 Sum_probs=212.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc--------CCCcEEEEEEeecCC-ccchHHHHHHHHHHhcc-CCCCcceEEeeeecC
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL--------PSGLTVAVKRFRASD-KISTGAFSSEIATLSRI-RHRNIVRLLGWGANR 844 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 844 (1117)
.++|.+.+.||+|+||+||+|+. ..+..||||+++... ....+++.+|+++++++ +|||||++++++...
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 35788999999999999999974 234689999997643 23346788999999999 899999999999999
Q ss_pred CceEEEEEecCCCChhhhhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE
Q 001238 845 KTKLLFYDYMPNGTLGMLLHDGEC-------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL 911 (1117)
Q Consensus 845 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill 911 (1117)
+..++||||+++|+|.+++..... ...+++.++++++.|+++||+|||++ +|+||||||+||++
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEE
Confidence 999999999999999999976432 23489999999999999999999999 99999999999999
Q ss_pred cCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCCh
Q 001238 912 GERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQ 990 (1117)
Q Consensus 912 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~ 990 (1117)
++++.+||+|||+++....... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||...
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~----- 297 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDY--YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV----- 297 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCT--TCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-----
T ss_pred cCCCcEEEcccCcccccccccc--cccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC-----
Confidence 9999999999999987654321 123344567899999999999999999999999999999999 99999642
Q ss_pred hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
...+.... +..... +..+...+..+.++++. ||+.||++||++.++++.|+++.....
T Consensus 298 ~~~~~~~~-~~~~~~------~~~~~~~~~~l~~li~~------~l~~dP~~Rps~~ell~~L~~~~~~~~ 355 (382)
T 3tt0_A 298 PVEELFKL-LKEGHR------MDKPSNCTNELYMMMRD------CWHAVPSQRPTFKQLVEDLDRIVALTS 355 (382)
T ss_dssp CHHHHHHH-HHTTCC------CCCCSSCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHH-HHcCCC------CCCCccCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 12222222 222211 11223344455555555 999999999999999999999876543
No 79
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=364.70 Aligned_cols=248 Identities=20% Similarity=0.272 Sum_probs=199.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.+.||+|+||+||+|+. .+|+.||||+++.. .....+.+.+|.++++.+ +||||+++++++.+.+..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 46799999999999999999985 46899999999753 223455678899999988 69999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++... +.+++.+++.++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+++...
T Consensus 102 v~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKS---RRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 99999999999999764 3489999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||... ...+..........
T Consensus 176 ~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~~----- 241 (353)
T 3txo_A 176 CNG----VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE-----NEDDLFEAILNDEV----- 241 (353)
T ss_dssp C-------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-----
T ss_pred cCC----ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCCC-----
Confidence 221 2334568999999999999999999999999999999999999999642 22333333333321
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCH------HHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTM------KDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~------~~v~~ 1051 (1117)
.++...+.....+++. |++.||++||++ .++++
T Consensus 242 ---~~p~~~~~~~~~li~~------lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 242 ---VYPTWLHEDATGILKS------FMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp ---CCCTTSCHHHHHHHHH------HTCSSGGGSTTSGGGTCTHHHHT
T ss_pred ---CCCCCCCHHHHHHHHH------HhhhCHHHccCCcccCCHHHHhh
Confidence 1223344455666655 999999999998 66655
No 80
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.4e-38 Score=360.90 Aligned_cols=269 Identities=23% Similarity=0.380 Sum_probs=194.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCC----cEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeecCCce-
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSG----LTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK- 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~----~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~- 847 (1117)
.++|++.+.||+|+||+||+|..... ..||||+++.. .....+++.+|++++++++||||+++++++...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 46799999999999999999986543 27999999754 333456799999999999999999999999877655
Q ss_pred -----EEEEEecCCCChhhhhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCccee
Q 001238 848 -----LLFYDYMPNGTLGMLLHDGE---CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCL 919 (1117)
Q Consensus 848 -----~lv~e~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl 919 (1117)
++||||+++|+|.+++.... ....+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEE
Confidence 99999999999999986532 112489999999999999999999999 9999999999999999999999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
+|||+++....... ........+|+.|+|||.+.+..++.++|||||||++|||++ |+.||.... .......
T Consensus 179 ~Dfg~a~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~--- 251 (323)
T 3qup_A 179 ADFGLSRKIYSGDY--YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE--NAEIYNY--- 251 (323)
T ss_dssp CCCCC-------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHH---
T ss_pred eecccccccccccc--ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC--hHHHHHH---
Confidence 99999987654321 122234457889999999999999999999999999999999 999997532 2222222
Q ss_pred HHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCCCCCCC
Q 001238 999 HLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPASGSEA 1066 (1117)
Q Consensus 999 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~~ 1066 (1117)
..... . ...+...+..+.+++.. |++.||++||++.++++.++++...+......
T Consensus 252 ~~~~~-~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~~ 306 (323)
T 3qup_A 252 LIGGN-R------LKQPPECMEEVYDLMYQ------CWSADPKQRPSFTCLRMELENILGHLSVLSTS 306 (323)
T ss_dssp HHTTC-C------CCCCTTCCHHHHHHHHH------TTCSSGGGSCCHHHHHHHHHHHHHC-------
T ss_pred HhcCC-C------CCCCCccCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHHHhhhcCCC
Confidence 12111 1 11122333455555554 99999999999999999999998876544433
No 81
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=5.3e-38 Score=353.74 Aligned_cols=259 Identities=23% Similarity=0.271 Sum_probs=198.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|+..+|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 457899999999999999999988899999999975422 224678899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++ +|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 100 ~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 173 (311)
T 3niz_A 100 FMEK-DLKKVLDENK--TGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPV 173 (311)
T ss_dssp CCSE-EHHHHHHTCT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred CCCC-CHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence 9985 7777776543 3489999999999999999999999 99999999999999999999999999998764322
Q ss_pred CCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCC-cccc
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDP-VEVL 1010 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 1010 (1117)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... .....+.......... ....
T Consensus 174 ----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~~~~~~~~~~ 247 (311)
T 3niz_A 174 ----RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDD--DQLPKIFSILGTPNPREWPQV 247 (311)
T ss_dssp ----C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTT--THHHHHHHHHCCCCTTTSGGG
T ss_pred ----ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChH--HHHHHHHHHHCCCChHHhhhh
Confidence 22334578999999999875 56899999999999999999999999754322 2222222222111100 0000
Q ss_pred C------------------cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1011 D------------------PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1011 ~------------------~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. .......+....++ +..|++.||++|||++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------i~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 248 QELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDL------LSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp TTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHH------HHHHSCSCTTTSCCHHHHHT
T ss_pred hccchhhhcccccccCCcHHHhCcccCHHHHHH------HHHHcCCChhHCCCHHHHhc
Confidence 0 00111122233444 44599999999999999986
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6e-38 Score=371.18 Aligned_cols=367 Identities=19% Similarity=0.248 Sum_probs=177.0
Q ss_pred CCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCC
Q 001238 132 NSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSL 211 (1117)
Q Consensus 132 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~l 211 (1117)
....+..+..++++++|++|+|++|.+++ +| .++.+++|++|+|++|++++ +| ++.+++|++|++++|
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N------- 95 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSN------- 95 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS-------
T ss_pred cCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCC-------
Confidence 33444444455666666666666666653 34 45666666666666666654 22 444444444444444
Q ss_pred CccccccccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCC
Q 001238 212 PHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLK 291 (1117)
Q Consensus 212 p~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 291 (1117)
.+++. | ++.+++|++|++++|.+.+ +| ++.+++|++|++++|++++ ++ +++++
T Consensus 96 ------------------~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~ 148 (457)
T 3bz5_A 96 ------------------KLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNT 148 (457)
T ss_dssp ------------------CCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCT
T ss_pred ------------------CCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCC
Confidence 33332 1 3344444444444444433 22 4445555555555555553 22 44555
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEec
Q 001238 292 NLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELD 371 (1117)
Q Consensus 292 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 371 (1117)
+|++|++++|+..+.+ .+..+++|++|++++|++++ +| ++.+++|+.|++++|++++. .++.+++|++|+++
T Consensus 149 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 149 QLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCS 220 (457)
T ss_dssp TCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECC
T ss_pred cCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECc
Confidence 5555555555333333 24455555555555555553 22 44455555555555555532 24445555555555
Q ss_pred CccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCC
Q 001238 372 NNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVI 451 (1117)
Q Consensus 372 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 451 (1117)
+|++++ +| ++.+++|+.|++++|++++.. +..+++|+.|++++|. |+.|++++|.+.+.+
T Consensus 221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYF 280 (457)
T ss_dssp SSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEE
T ss_pred CCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCcc
Confidence 555554 23 444445555555555554332 2233444444444432 233444444444433
Q ss_pred CCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhccc
Q 001238 452 PPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLV 531 (1117)
Q Consensus 452 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 531 (1117)
| ++.+++|+.|++++|.+.+.+|. ...+|+.|++++| ++|++|++++|+|++. + +..++
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~ 339 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT 339 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT
T ss_pred c--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCC
Confidence 3 23445555555555544444332 1223333333332 3455555555555542 1 44455
Q ss_pred ccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecccccccccccccc
Q 001238 532 RLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASL 599 (1117)
Q Consensus 532 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 599 (1117)
+|+.|++++|+|+++ +.|..|.+++|.+.|. ..+..|..+++++|+++|.+|..+
T Consensus 340 ~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 340 KLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 555555555555432 2344455555555543 234556666666666666666544
No 83
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=1.3e-38 Score=361.75 Aligned_cols=268 Identities=24% Similarity=0.352 Sum_probs=210.0
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-----CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeee--cCCceE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-----PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGA--NRKTKL 848 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~--~~~~~~ 848 (1117)
++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 5788899999999999999983 468899999998776666677999999999999999999999876 456688
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
+||||+++++|.+++.... +.+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 103 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 177 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHR--ARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLL 177 (327)
T ss_dssp EEEECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEEC
T ss_pred EEEeecCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceec
Confidence 9999999999999997642 3489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCC---------ChhHHHHHHHH
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPD---------GQHVIQWVRDH 999 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~---------~~~~~~~~~~~ 999 (1117)
.... ..........||+.|+|||++.+..++.++||||||+++|||++|+.||...... .......+...
T Consensus 178 ~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (327)
T 3lxl_A 178 PLDK-DYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLEL 256 (327)
T ss_dssp CTTC-SEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHH
T ss_pred ccCC-ccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHH
Confidence 5432 2222334557889999999999999999999999999999999999998542110 00011111122
Q ss_pred HhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1000 LKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1000 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
...... ...+...+..+.++++. |++.||++||++.++++.|+.+.....
T Consensus 257 ~~~~~~------~~~~~~~~~~l~~li~~------~l~~dP~~Rps~~ell~~L~~~~~~~~ 306 (327)
T 3lxl_A 257 LEEGQR------LPAPPACPAEVHELMKL------CWAPSPQDRPSFSALGPQLDMLWSGSR 306 (327)
T ss_dssp HHTTCC------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred hhcccC------CCCCCcccHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 222111 11223344455665555 999999999999999999999866543
No 84
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.9e-39 Score=369.40 Aligned_cols=263 Identities=23% Similarity=0.336 Sum_probs=208.5
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC------CCcEEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP------SGLTVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
++|++.+.||+|+||+||+|.+. +++.||||+++.. ......++.+|+.++++++|||||++++++...+..+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 150 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 150 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence 56888999999999999999842 4678999999654 2334456889999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCC----CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC---cceecc
Q 001238 849 LFYDYMPNGTLGMLLHDGE----CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY---ESCLAD 921 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~---~~kl~D 921 (1117)
+||||+++|+|.+++.... ....+++.+++.++.||++||+|||++ +|+||||||+||+++.++ .+||+|
T Consensus 151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~D 227 (367)
T 3l9p_A 151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGD 227 (367)
T ss_dssp EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEECC
Confidence 9999999999999997642 123489999999999999999999999 999999999999999555 599999
Q ss_pred ccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHH
Q 001238 922 FGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHL 1000 (1117)
Q Consensus 922 fGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~ 1000 (1117)
||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||... ...+......
T Consensus 228 FG~a~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~-----~~~~~~~~i~ 300 (367)
T 3l9p_A 228 FGMARDIYRAGY--YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK-----SNQEVLEFVT 300 (367)
T ss_dssp CHHHHHHHHHSS--CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-----CHHHHHHHHH
T ss_pred Cccccccccccc--cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHH
Confidence 999986543211 122334568999999999999999999999999999999998 99999642 1122222222
Q ss_pred hcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1001 KSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1001 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
... . ...+...+..+.++++. ||+.+|++||++.+|++.|+.+.+.+.
T Consensus 301 ~~~-~------~~~~~~~~~~l~~li~~------~l~~dP~~Rps~~eil~~l~~~~~~~~ 348 (367)
T 3l9p_A 301 SGG-R------MDPPKNCPGPVYRIMTQ------CWQHQPEDRPNFAIILERIEYCTQDPD 348 (367)
T ss_dssp TTC-C------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHCHH
T ss_pred cCC-C------CCCCccCCHHHHHHHHH------HcCCCHhHCcCHHHHHHHHHHHhhChh
Confidence 221 1 11122333445555554 999999999999999999998876543
No 85
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.5e-38 Score=375.41 Aligned_cols=258 Identities=26% Similarity=0.454 Sum_probs=209.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.++|++.+.||+|+||+||+|.+.++..||||+++... ...++|.+|++++++++|||||++++++. .+..++||||+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~ 264 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFM 264 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeec
Confidence 45688889999999999999998888999999998643 45778999999999999999999999886 56789999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
++|+|.++++.... ..+++..+..++.||++||+|||++ +|+||||||+|||++.++.+||+|||+++.....
T Consensus 265 ~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~--- 337 (454)
T 1qcf_A 265 AKGSLLDFLKSDEG-SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN--- 337 (454)
T ss_dssp TTCBHHHHHHSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH---
T ss_pred CCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC---
Confidence 99999999986421 2378999999999999999999999 9999999999999999999999999999876431
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
.........+|+.|+|||++....++.++|||||||++|||++ |+.||... ... +......... .. .
T Consensus 338 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~--~~~---~~~~~i~~~~-~~------~ 405 (454)
T 1qcf_A 338 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM--SNP---EVIRALERGY-RM------P 405 (454)
T ss_dssp HHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CHH---HHHHHHHHTC-CC------C
T ss_pred ceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC--CHH---HHHHHHHcCC-CC------C
Confidence 1222334457889999999999999999999999999999999 99999642 112 2222222211 11 1
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.+...+..+.+++.. ||+.||++||++.+|++.|+.+...
T Consensus 406 ~~~~~~~~l~~li~~------cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 406 RPENCPEELYNIMMR------CWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp CCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred CCCCCCHHHHHHHHH------HccCChhHCcCHHHHHHHHHHHHhc
Confidence 122333455555544 9999999999999999999988654
No 86
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=3.8e-38 Score=364.06 Aligned_cols=248 Identities=19% Similarity=0.277 Sum_probs=198.8
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.++||+|+||+||+|+.+ +++.||||++++.. ....+.+.+|..+++++ +|||||++++++.+.+..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 357889999999999999999854 58899999997542 22345688999999887 89999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|..++... +.+++..+..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+++...
T Consensus 131 V~E~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~ 204 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 204 (396)
T ss_dssp EEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEcCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence 99999999999998764 3489999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCC---hhHHH-HHHHHHhcCCC
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDG---QHVIQ-WVRDHLKSKKD 1005 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~---~~~~~-~~~~~~~~~~~ 1005 (1117)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..... .........
T Consensus 205 ~~~----~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~-- 278 (396)
T 4dc2_A 205 RPG----DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-- 278 (396)
T ss_dssp CTT----CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCC--
T ss_pred cCC----CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccc--
Confidence 221 23445789999999999999999999999999999999999999996432111 11112 222222222
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCH
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTM 1046 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~ 1046 (1117)
..++...+.....+++. |++.||++||++
T Consensus 279 ------~~~p~~~s~~~~~li~~------lL~~dP~~R~~~ 307 (396)
T 4dc2_A 279 ------IRIPRSLSVKAASVLKS------FLNKDPKERLGC 307 (396)
T ss_dssp ------CCCCTTSCHHHHHHHHH------HTCSCTTTSTTC
T ss_pred ------cCCCCcCCHHHHHHHHH------HhcCCHhHcCCC
Confidence 12233445556666665 999999999985
No 87
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=3.9e-38 Score=347.69 Aligned_cols=253 Identities=28% Similarity=0.424 Sum_probs=193.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCc----cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDK----ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||.||+|.+ .|+.||||+++.... ...+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 4788899999999999999987 488999999875422 23467899999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC--------CCcceecccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE--------RYESCLADFG 923 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~--------~~~~kl~DfG 923 (1117)
||+++++|.+++... .+++..+..++.|+++||+|||+++..+|+||||||+||+++. ++.+||+|||
T Consensus 86 e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg 161 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG 161 (271)
T ss_dssp ECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCC
T ss_pred EcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCC
Confidence 999999999998643 3899999999999999999999992222999999999999986 6789999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK 1003 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~ 1003 (1117)
+++..... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||.... ............
T Consensus 162 ~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~~~~~~~~~ 230 (271)
T 3dtc_A 162 LAREWHRT------TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID-----GLAVAYGVAMNK 230 (271)
T ss_dssp C-------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSC-----HHHHHHHHHTSC
T ss_pred cccccccc------cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHhhhcCC
Confidence 99866432 1224578999999999999999999999999999999999999996421 111122211111
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhh
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREI 1056 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~ 1056 (1117)
. ....+...+..+.++++. |++.+|++||++.++++.|+++
T Consensus 231 ~------~~~~~~~~~~~~~~li~~------~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 231 L------ALPIPSTCPEPFAKLMED------CWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp C------CCCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHC-
T ss_pred C------CCCCCcccCHHHHHHHHH------HhcCCcccCcCHHHHHHHHhcC
Confidence 1 112233344455655555 9999999999999999999764
No 88
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.4e-38 Score=357.76 Aligned_cols=252 Identities=19% Similarity=0.228 Sum_probs=204.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.++|++.+.||+|+||+||+|... +++.||+|++.... .....+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 457899999999999999999754 68899999987543 3456789999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC--CCcceeccccccccccCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE--RYESCLADFGLARLVEDD 931 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~--~~~~kl~DfGla~~~~~~ 931 (1117)
+++|+|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 83 ~~g~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~ 157 (321)
T 1tki_A 83 ISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG 157 (321)
T ss_dssp CCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred CCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence 99999999997642 3489999999999999999999999 9999999999999997 789999999999876542
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
. ......||+.|+|||++.+..++.++||||+||++|||++|+.||... ...+.+............
T Consensus 158 ~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~~~~~--- 224 (321)
T 1tki_A 158 D-----NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-----TNQQIIENIMNAEYTFDE--- 224 (321)
T ss_dssp C-----EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTCCCCCH---
T ss_pred C-----ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC-----CHHHHHHHHHcCCCCCCh---
Confidence 1 223457999999999999888999999999999999999999999642 222333333333322211
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
......+..+.++++ .|++.||++|||+.|+++.
T Consensus 225 -~~~~~~s~~~~~li~------~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 225 -EAFKEISIEAMDFVD------RLLVKERKSRMTASEALQH 258 (321)
T ss_dssp -HHHTTSCHHHHHHHH------TTSCSSGGGSCCHHHHHHS
T ss_pred -hhhccCCHHHHHHHH------HHcCCChhHCcCHHHHhcC
Confidence 111222334444444 5999999999999999883
No 89
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=356.26 Aligned_cols=251 Identities=21% Similarity=0.322 Sum_probs=203.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc------cchHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK------ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
.++|++.+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 346889999999999999999854 689999999975432 2356799999999999999999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC----cceecccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY----ESCLADFG 923 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~----~~kl~DfG 923 (1117)
++||||+++|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 90 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEEECCCSCBHHHHHTTS---SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEcCCCCCHHHHHHhc---CCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 9999999999999999764 3489999999999999999999999 999999999999999887 89999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK 1003 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~ 1003 (1117)
+++...... ......||+.|+|||++....++.++|||||||++|||++|+.||... ...+.........
T Consensus 164 ~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~~~~~~ 233 (326)
T 2y0a_A 164 LAHKIDFGN-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANVSAVN 233 (326)
T ss_dssp TCEECCTTS-----CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHHTC
T ss_pred CCeECCCCC-----ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC-----CHHHHHHHHHhcC
Confidence 998765322 223457999999999999899999999999999999999999999642 1222222222222
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.... +......+..+.++++. |++.||++||++.++++
T Consensus 234 ~~~~----~~~~~~~~~~~~~li~~------~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 234 YEFE----DEYFSNTSALAKDFIRR------LLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp CCCC----HHHHTTSCHHHHHHHHH------HSCSSGGGSCCHHHHHH
T ss_pred CCcC----ccccccCCHHHHHHHHH------HccCChhhCCCHHHHhc
Confidence 1111 11122333445555554 99999999999999987
No 90
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.4e-38 Score=367.09 Aligned_cols=274 Identities=16% Similarity=0.260 Sum_probs=206.3
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcCC------CcEEEEEEeecCCccc-----------hHHHHHHHHHHhccCCCCcce
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLPS------GLTVAVKRFRASDKIS-----------TGAFSSEIATLSRIRHRNIVR 836 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~H~niv~ 836 (1117)
..++|++.+.||+|+||+||+|.+.. ++.||||++....... ...+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 35689999999999999999998654 4789999987653211 112334556677788999999
Q ss_pred EEeeeecC----CceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc
Q 001238 837 LLGWGANR----KTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG 912 (1117)
Q Consensus 837 l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~ 912 (1117)
+++++... ...++||||+ +++|.+++.... +.+++.+++.++.||+.||+|||++ +|+||||||+||+++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~ 186 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA--KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLN 186 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEE
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEe
Confidence 99998764 4579999999 999999997642 4499999999999999999999999 999999999999999
Q ss_pred --CCCcceeccccccccccCCCCCc---cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCC
Q 001238 913 --ERYESCLADFGLARLVEDDSGGS---FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFP 987 (1117)
Q Consensus 913 --~~~~~kl~DfGla~~~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~ 987 (1117)
.++.+||+|||+++......... ........||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 187 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~ 266 (364)
T 3op5_A 187 YKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLK 266 (364)
T ss_dssp SSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT
T ss_pred cCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccccc
Confidence 88999999999998765432111 1122345699999999999999999999999999999999999999975332
Q ss_pred CChhHHHHHHHHHhcCCCCccccCcccC-CCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCCC
Q 001238 988 DGQHVIQWVRDHLKSKKDPVEVLDPKLQ-GHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPAS 1062 (1117)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~~ 1062 (1117)
. ............. ...+.+++.+. ...+..+.++++. ||+.+|++||++.++++.|+++......
T Consensus 267 ~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~li~~------cl~~~p~~RP~~~~l~~~l~~~~~~~~~ 333 (364)
T 3op5_A 267 D-PKYVRDSKIRYRE--NIASLMDKCFPAANAPGEIAKYMET------VKLLDYTEKPLYENLRDILLQGLKAIGS 333 (364)
T ss_dssp C-HHHHHHHHHHHHH--CHHHHHHHHSCTTCCCHHHHHHHHH------HHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred C-HHHHHHHHHHhhh--hHHHHHHHhcccccCHHHHHHHHHH------HhcCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 2 2222222222211 11122222221 2233455555554 9999999999999999999988765443
No 91
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2e-38 Score=357.51 Aligned_cols=262 Identities=24% Similarity=0.374 Sum_probs=197.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCcc---chHHHHHHHHHHhccCCCCcceEEeeeecCCce---
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKI---STGAFSSEIATLSRIRHRNIVRLLGWGANRKTK--- 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~--- 847 (1117)
.++|++.+.||+|+||+||+|.. .+++.||||+++..... ....+.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 45789999999999999999985 57899999999765322 235688999999999999999999998765543
Q ss_pred -EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccc
Q 001238 848 -LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLAR 926 (1117)
Q Consensus 848 -~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~ 926 (1117)
|+||||+++++|.++++.. +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~ 164 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR 164 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred cEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence 9999999999999999754 3489999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCC
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDP 1006 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1117)
....... .........||+.|+|||++.+..++.++||||||+++|||++|+.||... ...............+
T Consensus 165 ~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-----~~~~~~~~~~~~~~~~ 238 (311)
T 3ork_A 165 AIADSGN-SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-----SPVSVAYQHVREDPIP 238 (311)
T ss_dssp ------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHCCCCC
T ss_pred ccccccc-ccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHhcCCCCC
Confidence 7654321 112334467999999999999999999999999999999999999999642 2222333333333222
Q ss_pred ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHH-HHHHHHHhhhc
Q 001238 1007 VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMK-DVAALLREIRQ 1058 (1117)
Q Consensus 1007 ~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~-~v~~~L~~~~~ 1058 (1117)
.... ....+..+..++.. |++.||++||++. ++.+.+.+...
T Consensus 239 ~~~~----~~~~~~~l~~li~~------~l~~dP~~R~~~~~~l~~~l~~~~~ 281 (311)
T 3ork_A 239 PSAR----HEGLSADLDAVVLK------ALAKNPENRYQTAAEMRADLVRVHN 281 (311)
T ss_dssp HHHH----STTCCHHHHHHHHH------HTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred cccc----cCCCCHHHHHHHHH------HHhcCHhhChhhHHHHHHHHHHHhc
Confidence 1111 22234455555554 9999999999655 45556665544
No 92
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=7.1e-38 Score=351.84 Aligned_cols=263 Identities=30% Similarity=0.424 Sum_probs=201.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.++||+|+||+||+|... ..+|+|+++... ....+.+.+|++++++++||||+++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 467999999999999999999864 369999887543 233467899999999999999999999875 456899999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++.... +.+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||+++......
T Consensus 112 ~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~ 186 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQE--TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHTSC--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC-----
T ss_pred cCCCCcHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceeccccc
Confidence 999999999997543 3489999999999999999999999 99999999999999999999999999998654321
Q ss_pred CCccccCCccccccccCChhhhc---cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 933 GGSFSANPQFAGSYGYIAPEYAN---MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
. ........||+.|+|||++. ...++.++||||||+++|||++|+.||..... ...... ..........
T Consensus 187 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~-~~~~~~----~~~~~~~~~~- 258 (307)
T 3lb7_A 187 G--SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-RDQIIF----MVGRGYASPD- 258 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHHHHH----HHHHTCCCCC-
T ss_pred c--cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCc-HHHHHH----HHhcCCCCcc-
Confidence 1 12233457999999999986 56788999999999999999999999975321 111111 1111111111
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
. +.+....+..+.+++.. |++.+|++||++.++++.++.+....
T Consensus 259 ~-~~~~~~~~~~l~~li~~------~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 259 L-SKLYKNCPKAMKRLVAD------CVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp S-TTSCSSSCHHHHHHHHH------HSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred h-hhhhcCCcHHHHHHHHH------HhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 1 12223334455555554 99999999999999999999887543
No 93
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=5.1e-38 Score=354.03 Aligned_cols=244 Identities=24% Similarity=0.347 Sum_probs=203.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||+||+|+.. +|+.||+|+++... ....+.+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 46888999999999999999854 69999999997532 234567889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~- 158 (318)
T 1fot_A 86 DYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD- 158 (318)
T ss_dssp CCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS-
T ss_pred eCCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC-
Confidence 999999999999764 3489999999999999999999999 999999999999999999999999999987543
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||... ..............
T Consensus 159 ------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-----~~~~~~~~i~~~~~------- 220 (318)
T 1fot_A 159 ------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-----NTMKTYEKILNAEL------- 220 (318)
T ss_dssp ------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHCCC-------
T ss_pred ------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCC-------
Confidence 123457999999999999999999999999999999999999999642 22233333333321
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-----CHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-----TMKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-----s~~~v~~ 1051 (1117)
.++...+..+.++++. |++.||++|| ++.++.+
T Consensus 221 -~~p~~~~~~~~~li~~------lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 221 -RFPPFFNEDVKDLLSR------LITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp -CCCTTSCHHHHHHHHH------HTCSCTTTCTTSSTTTTHHHHT
T ss_pred -CCCCCCCHHHHHHHHH------HhccCHHHcCCCcCCCHHHHhc
Confidence 2233444566666665 9999999999 8888875
No 94
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=9.2e-39 Score=356.33 Aligned_cols=256 Identities=17% Similarity=0.318 Sum_probs=201.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCC-C-------cEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPS-G-------LTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
++|++.+.||+|+||+||+|.... + +.||+|++........+.+.+|++++++++||||+++++++.+.+..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 578889999999999999997532 3 57999999876666677899999999999999999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc--------cee
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE--------SCL 919 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~--------~kl 919 (1117)
++||||+++|+|.+++.... ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++. +||
T Consensus 88 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl 162 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKKNK--NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKL 162 (289)
T ss_dssp EEEEECCTTCBHHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEE
T ss_pred EEEEECCCCCCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeee
Confidence 99999999999999998653 3389999999999999999999999 9999999999999998887 999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
+|||+++.... .....||+.|+|||++.+ ..++.++||||||+++|||++|..|+.... . ..... .
T Consensus 163 ~Dfg~~~~~~~--------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~--~--~~~~~-~ 229 (289)
T 4fvq_A 163 SDPGISITVLP--------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSAL--D--SQRKL-Q 229 (289)
T ss_dssp CCCCSCTTTSC--------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTS--C--HHHHH-H
T ss_pred ccCcccccccC--------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcccc--c--hHHHH-H
Confidence 99999976532 123468899999999987 778999999999999999999655443211 1 11111 1
Q ss_pred HHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCCCC
Q 001238 999 HLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPASG 1063 (1117)
Q Consensus 999 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~~~ 1063 (1117)
...... .++...+..+.++++. |++.||++||++.++++.|+++.......
T Consensus 230 ~~~~~~--------~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~~l~~l~~p~~~~ 280 (289)
T 4fvq_A 230 FYEDRH--------QLPAPKAAELANLINN------CMDYEPDHRPSFRAIIRDLNSLFTPDLVP 280 (289)
T ss_dssp HHHTTC--------CCCCCSSCTTHHHHHH------HSCSSGGGSCCHHHHHHHHHTCC------
T ss_pred HhhccC--------CCCCCCCHHHHHHHHH------HcCCChhHCcCHHHHHHHHHHhcCCCCCC
Confidence 111111 1112223345555555 99999999999999999999986544433
No 95
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.8e-38 Score=360.74 Aligned_cols=265 Identities=25% Similarity=0.383 Sum_probs=209.6
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc------CCCcEEEEEEeecC-CccchHHHHHHHHHHhcc-CCCCcceEEeeeecCC
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL------PSGLTVAVKRFRAS-DKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRK 845 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 845 (1117)
..++|++.+.||+|+||+||+|.. .+++.||||++... .....+.+.+|+++++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 456899999999999999999984 24678999999754 233456799999999999 8999999999999999
Q ss_pred ceEEEEEecCCCChhhhhcCCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECA--------------------GLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVK 905 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlk 905 (1117)
..++||||+++|+|.+++...... ..+++..++.++.|+++||+|||++ +|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCC
Confidence 999999999999999999865321 2378999999999999999999999 99999999
Q ss_pred cCeEEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCC
Q 001238 906 SHNILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDA 984 (1117)
Q Consensus 906 p~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~ 984 (1117)
|+||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||||+++|||++ |+.||..
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 277 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSN--YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG 277 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTT--SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCcc--ceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999987654322 223345568899999999999999999999999999999998 9999975
Q ss_pred CCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 985 SFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
... ....... ...... +..+...+..+..++.. ||+.||++||++.++++.|+.+....
T Consensus 278 ~~~-~~~~~~~----~~~~~~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~l~~~l~~~~~~~ 336 (344)
T 1rjb_A 278 IPV-DANFYKL----IQNGFK------MDQPFYATEEIYIIMQS------CWAFDSRKRPSFPNLTSFLGCQLADA 336 (344)
T ss_dssp CCC-SHHHHHH----HHTTCC------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred CCc-HHHHHHH----HhcCCC------CCCCCCCCHHHHHHHHH------HcCCCchhCcCHHHHHHHHHHHHHHH
Confidence 322 2222222 222111 11222334455555555 99999999999999999999886543
No 96
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=6.7e-38 Score=345.67 Aligned_cols=252 Identities=19% Similarity=0.344 Sum_probs=204.9
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecC--CceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANR--KTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~--~~~~lv~ 851 (1117)
++|++.+.||+|+||+||+|++ +++.||||+++... ....+.+.+|++++++++||||+++++++.+. +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 4688899999999999999998 48899999997653 23345789999999999999999999999887 7789999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--eeeeccccCeEEEcCCCcceecccccccccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPA--ILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||+++|+|.+++..... ..+++.++..++.|+++||+|||++ + |+||||||+||+++.++.++++|||++....
T Consensus 89 e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp ECCTTCBHHHHHHSCSS-CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred cccCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 99999999999987532 2489999999999999999999998 7 9999999999999999999999988876432
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCc---CCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCC
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISE---KSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDP 1006 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1117)
. ....||+.|+|||++.+..++. ++||||||+++|||++|+.||... ..............
T Consensus 165 ~---------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~-----~~~~~~~~~~~~~~-- 228 (271)
T 3kmu_A 165 S---------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL-----SNMEIGMKVALEGL-- 228 (271)
T ss_dssp C---------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS-----CHHHHHHHHHHSCC--
T ss_pred c---------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc-----ChHHHHHHHHhcCC--
Confidence 2 2346899999999998765554 799999999999999999999642 11222222222221
Q ss_pred ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1007 VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1007 ~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
.+..+...+..+.+++.. |++.||++||++.++++.|+++.+
T Consensus 229 ----~~~~~~~~~~~~~~li~~------~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 229 ----RPTIPPGISPHVSKLMKI------CMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp ----CCCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred ----CCCCCCCCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHhhc
Confidence 122334445566666665 999999999999999999998864
No 97
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=8.6e-38 Score=350.10 Aligned_cols=266 Identities=17% Similarity=0.248 Sum_probs=212.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||++.... ..+.+.+|+++++++ +|+|++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 35789999999999999999984 579999999987543 345688999999999 79999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc-----ceecccccccc
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE-----SCLADFGLARL 927 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~-----~kl~DfGla~~ 927 (1117)
|+ +++|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++. +||+|||+++.
T Consensus 87 ~~-~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~ 160 (298)
T 1csn_A 87 LL-GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF 160 (298)
T ss_dssp CC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred ec-CCCHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence 99 999999998642 3489999999999999999999999 9999999999999987776 99999999987
Q ss_pred ccCCCCCc---cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCCh-hHHHHHHHHHhcC
Q 001238 928 VEDDSGGS---FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQ-HVIQWVRDHLKSK 1003 (1117)
Q Consensus 928 ~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~-~~~~~~~~~~~~~ 1003 (1117)
........ ........||+.|+|||++.+..++.++||||||+++|||++|+.||........ .....+......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~- 239 (298)
T 1csn_A 161 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS- 239 (298)
T ss_dssp SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH-
T ss_pred cccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC-
Confidence 76543221 1223456799999999999999999999999999999999999999976432221 111212111111
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
.+. +.+....+..+.+++.. |++.+|++||++++|++.|+++.+..
T Consensus 240 -~~~----~~~~~~~~~~l~~li~~------~l~~dp~~RP~~~~l~~~l~~~~~~~ 285 (298)
T 1csn_A 240 -TPL----RELCAGFPEEFYKYMHY------ARNLAFDATPDYDYLQGLFSKVLERL 285 (298)
T ss_dssp -SCH----HHHTTTSCHHHHHHHHH------HHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred -ccH----HHHHhhCcHHHHHHHHH------HhcCCcccCCCHHHHHHHHHHHHHhc
Confidence 111 11222334455665555 99999999999999999999887643
No 98
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=4.4e-38 Score=355.28 Aligned_cols=262 Identities=25% Similarity=0.408 Sum_probs=211.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc------CCCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL------PSGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
.++|.+.+.||+|+||.||+|.. .+++.||||+++... ....+++.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 45788999999999999999974 345899999997543 33346788999999999999999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCC---------------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeecccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGEC---------------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKS 906 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp 906 (1117)
++||||+++|+|.+++..... ...+++.+++.++.|+++||+|||++ +|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccch
Confidence 999999999999999976432 12388999999999999999999999 999999999
Q ss_pred CeEEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCC
Q 001238 907 HNILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDAS 985 (1117)
Q Consensus 907 ~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~ 985 (1117)
+||+++.++.+||+|||+++...... .........+|+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 256 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEED--SYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI 256 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTS--CEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred heEEEcCCCCEEEccccccccccccc--cceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999998765432 1223344567889999999999999999999999999999999 99999753
Q ss_pred CCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 986 FPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.. ......+ ..... +..+...+..+.+++.. |++.||++||++.++++.|+++..+
T Consensus 257 ~~--~~~~~~~----~~~~~------~~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 257 PP--ERLFNLL----KTGHR------MERPDNCSEEMYRLMLQ------CWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp CG--GGHHHHH----HTTCC------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CH--HHHHHHh----hcCCc------CCCCccCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHhh
Confidence 22 2222222 11111 11223344455555555 9999999999999999999988654
No 99
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.3e-39 Score=365.73 Aligned_cols=268 Identities=27% Similarity=0.375 Sum_probs=188.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhc--cCCCCcceEEeeeecCC----ceE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSR--IRHRNIVRLLGWGANRK----TKL 848 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~~----~~~ 848 (1117)
.++|++.+.||+|+||+||+|++ +|+.||||++... ....+.+|.+++.. ++||||+++++++...+ ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 35799999999999999999987 4889999998643 34567788888887 79999999999988776 789
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHh--------ccCCCceeeeccccCeEEEcCCCcceec
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLH--------HDCVPAILHRDVKSHNILLGERYESCLA 920 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivHrDlkp~Nill~~~~~~kl~ 920 (1117)
+||||+++|+|.+++... .+++..+.+++.|++.||+||| ++ +|+||||||+||+++.++.+||+
T Consensus 78 lv~e~~~~g~L~~~l~~~----~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl~ 150 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIA 150 (303)
T ss_dssp EEEECCTTCCHHHHHHHC----CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BC
T ss_pred EEEeccCCCCHHHHHhcc----CcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEEe
Confidence 999999999999999754 3788889999999999999999 77 99999999999999999999999
Q ss_pred cccccccccCCCCCccccCCccccccccCChhhhccC------CCCcCCCeeehhhhHHHHHhC----------CCCCCC
Q 001238 921 DFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT------KISEKSDVYSYGVVLLEIITG----------KKPVDA 984 (1117)
Q Consensus 921 DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~vl~ell~g----------~~P~~~ 984 (1117)
|||+++.................||+.|+|||++.+. .++.++|||||||++|||++| +.||..
T Consensus 151 DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~ 230 (303)
T 3gxj_A 151 DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYD 230 (303)
T ss_dssp CCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTT
T ss_pred ecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccc
Confidence 9999987654432222223445799999999998765 455789999999999999999 677754
Q ss_pred CCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 985 SFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
..+................ ..+..+..+.. .........++..||+.||++||++.++++.|+++.++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 231 LVPSDPSVEEMRKVVCEQK------LRPNIPNRWQS-CEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp TCC-CCCCC-CHHHHTTSC------CCCCCCGGGGS-SHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC-
T ss_pred cCCCCccHHHHHHHHHHhh------cCCCccccccc-hhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhc
Confidence 3322222222222221111 11111111110 011112234566799999999999999999999987654
No 100
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=6.1e-38 Score=349.41 Aligned_cols=258 Identities=26% Similarity=0.325 Sum_probs=196.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
++|++.+.||+|+||+||+|+..+|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 46888999999999999999988899999999975432 2346788999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
+++ +|.+++.... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 154 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCE--GGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV- 154 (288)
T ss_dssp CSE-EHHHHHHTST--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred cCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc-
Confidence 975 8888887643 3489999999999999999999999 99999999999999999999999999998764321
Q ss_pred CccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCC--c---
Q 001238 934 GSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDP--V--- 1007 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 1007 (1117)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... .......+.......... .
T Consensus 155 ---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 229 (288)
T 1ob3_A 155 ---RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS--EADQLMRIFRILGTPNSKNWPNVT 229 (288)
T ss_dssp ----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHCCCCTTTSTTGG
T ss_pred ---cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHHHHCCCChhhchhhh
Confidence 12234578999999999865 458999999999999999999999996521 111111121111110000 0
Q ss_pred --cccCcc-----------cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1008 --EVLDPK-----------LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1008 --~~~~~~-----------l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
...++. .....+....++++. |++.||++||+++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~------~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 230 ELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSK------MLKLDPNQRITAKQALE 280 (288)
T ss_dssp GSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHH------HTCSSTTTSCCHHHHHT
T ss_pred cccccccccccccCccHHHHhhhcCHHHHHHHHH------HcCCCcccCCCHHHHhc
Confidence 001111 112233344455544 99999999999999876
No 101
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=7.2e-38 Score=344.69 Aligned_cols=257 Identities=28% Similarity=0.451 Sum_probs=211.1
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecC
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMP 855 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 855 (1117)
++|++.+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence 46888899999999999999988889999999986543 45689999999999999999999999999999999999999
Q ss_pred CCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCc
Q 001238 856 NGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGS 935 (1117)
Q Consensus 856 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~ 935 (1117)
+++|.+++.... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++..... .
T Consensus 87 ~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~---~ 158 (267)
T 3t9t_A 87 HGCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD---Q 158 (267)
T ss_dssp TCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH---H
T ss_pred CCcHHHHHhhCc--ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccc---c
Confidence 999999997643 3489999999999999999999999 9999999999999999999999999999876421 1
Q ss_pred cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCccc
Q 001238 936 FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKL 1014 (1117)
Q Consensus 936 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1014 (1117)
........+|+.|+|||++....++.++||||+|+++|||++ |+.||... ...+.......... +..
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~i~~~~~-------~~~ 226 (267)
T 3t9t_A 159 YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-----SNSEVVEDISTGFR-------LYK 226 (267)
T ss_dssp HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTTCC-------CCC
T ss_pred ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC-----CHHHHHHHHhcCCc-------CCC
Confidence 122334567889999999998999999999999999999999 89999642 12222222222111 111
Q ss_pred CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1015 QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1015 ~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
+...+..+.++++. |++.+|++||++.++++.|+++.+.
T Consensus 227 ~~~~~~~l~~li~~------~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 227 PRLASTHVYQIMNH------CWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp CTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CccCcHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHhc
Confidence 22334455555554 9999999999999999999998753
No 102
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=6e-38 Score=360.44 Aligned_cols=252 Identities=22% Similarity=0.320 Sum_probs=202.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 45799999999999999999975 4689999999976432 23457889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC---cceeccccccccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY---ESCLADFGLARLV 928 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~---~~kl~DfGla~~~ 928 (1117)
||+++|+|.+++... +.+++.++..++.||++||+|||++ +|+||||||+||+++.++ .+||+|||+++..
T Consensus 108 e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~ 181 (362)
T 2bdw_A 108 DLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 181 (362)
T ss_dssp CCCCSCBHHHHHTTC---SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred ecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence 999999999988764 3489999999999999999999999 999999999999998654 5999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||... ..................
T Consensus 182 ~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~-----~~~~~~~~i~~~~~~~~~ 251 (362)
T 2bdw_A 182 NDSE-----AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-----DQHRLYAQIKAGAYDYPS 251 (362)
T ss_dssp TTCC-----SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCCCCT
T ss_pred cCCc-----ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhCCCCCCc
Confidence 5321 233567999999999999989999999999999999999999999642 122222222222211111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
+. ....+..+.+++.. |++.||++||++.++++.
T Consensus 252 ---~~-~~~~~~~~~~li~~------~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 252 ---PE-WDTVTPEAKSLIDS------MLTVNPKKRITADQALKV 285 (362)
T ss_dssp ---TG-GGGSCHHHHHHHHH------HSCSSGGGSCCHHHHTTS
T ss_pred ---cc-ccCCCHHHHHHHHH------HcCCChhhCcCHHHHhcC
Confidence 11 11223345555554 999999999999998763
No 103
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=9.4e-38 Score=348.66 Aligned_cols=256 Identities=23% Similarity=0.300 Sum_probs=195.7
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
++|++.+.||+|+||+||+|.. .+|+.||||+++.... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 4688899999999999999985 4689999999975432 224678899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++ ++.+.+.... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~~-~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV 155 (292)
T ss_dssp CCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC
T ss_pred cCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCcc
Confidence 9986 4444444322 3489999999999999999999999 99999999999999999999999999998764321
Q ss_pred CCccccCCccccccccCChhhhccCC-CCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTK-ISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
.......||+.|+|||++.+.. ++.++||||+||++|||++|..||... ......+.........+.....
T Consensus 156 ----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~----~~~~~~~~~i~~~~~~~~~~~~ 227 (292)
T 3o0g_A 156 ----RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPG----NDVDDQLKRIFRLLGTPTEEQW 227 (292)
T ss_dssp ----SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCC----SSHHHHHHHHHHHHCCCCTTTC
T ss_pred ----ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCC----CCHHHHHHHHHHHhCCCChhhh
Confidence 2334557899999999987665 899999999999999999988886432 1122222222211111110000
Q ss_pred ---------------------cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1012 ---------------------PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1012 ---------------------~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.......+....++++. |++.||++|||++|+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~------~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 228 PSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQN------LLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHH------HSCSSGGGSCCHHHHHT
T ss_pred hhhcccccccccccccCCcchhhcccccChHHHHHHHH------HhccChhhCCCHHHHhc
Confidence 00111233444555554 99999999999999976
No 104
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=6.5e-38 Score=368.49 Aligned_cols=254 Identities=20% Similarity=0.252 Sum_probs=203.6
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
...++|++.+.||+|+||+||+|.. .+|+.||+|++..... ...+.+.+|++++++++|||||++++++.+.+..|+
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 3456799999999999999999974 5789999999976532 234568999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc---CCCcceeccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG---ERYESCLADFGLAR 926 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~---~~~~~kl~DfGla~ 926 (1117)
||||+++|+|.+.+... +.+++..+..++.||++||+|||++ +|+||||||+||+++ +++.+||+|||+++
T Consensus 88 v~E~~~gg~L~~~i~~~---~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~ 161 (444)
T 3soa_A 88 IFDLVTGGELFEDIVAR---EYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAI 161 (444)
T ss_dssp EECCCBCCBHHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred EEEeCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence 99999999999988764 3489999999999999999999999 999999999999998 45789999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCC
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDP 1006 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1117)
...... .......||+.|+|||++....++.++||||+||++|+|++|+.||... ................
T Consensus 162 ~~~~~~----~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~-----~~~~~~~~i~~~~~~~ 232 (444)
T 3soa_A 162 EVEGEQ----QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE-----DQHRLYQQIKAGAYDF 232 (444)
T ss_dssp CCCTTC----CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHTCCCC
T ss_pred EecCCC----ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHhCCCCC
Confidence 765422 2234568999999999999999999999999999999999999999642 2222233332222221
Q ss_pred ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1007 VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1007 ~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.. +. ....+..+.+++.. |++.||++||++.|+++
T Consensus 233 ~~---~~-~~~~s~~~~~li~~------~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 233 PS---PE-WDTVTPEAKDLINK------MLTINPSKRITAAEALK 267 (444)
T ss_dssp CT---TT-TTTSCHHHHHHHHH------HSCSSTTTSCCHHHHHH
T ss_pred Cc---cc-cccCCHHHHHHHHH------HcCCChhHCCCHHHHhc
Confidence 11 11 12233455555555 99999999999999987
No 105
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=7.6e-38 Score=348.51 Aligned_cols=253 Identities=27% Similarity=0.476 Sum_probs=201.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccc-------hHHHHHHHHHHhccCCCCcceEEeeeecCCc
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKIS-------TGAFSSEIATLSRIRHRNIVRLLGWGANRKT 846 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 846 (1117)
.++|++.+.||+|+||+||+|.. .+++.||+|++....... .+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 35788899999999999999985 578999999986543221 157899999999999999999999987654
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--eeeeccccCeEEEcCCCc-----cee
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPA--ILHRDVKSHNILLGERYE-----SCL 919 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivHrDlkp~Nill~~~~~-----~kl 919 (1117)
++||||+++|+|.+.+.... ..+++..+..++.|+++||+|||++ + |+||||||+||+++.++. +||
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl 170 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKA--HPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKV 170 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEE
T ss_pred -eEEEEecCCCCHHHHHhccc--CCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEe
Confidence 79999999999988887643 3489999999999999999999999 7 999999999999988776 999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhh--ccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYA--NMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVR 997 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~ 997 (1117)
+|||+++.... ......||+.|+|||++ ....++.++||||+|+++|||++|+.||........ ....
T Consensus 171 ~Dfg~~~~~~~-------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~---~~~~ 240 (287)
T 4f0f_A 171 ADFGLSQQSVH-------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKI---KFIN 240 (287)
T ss_dssp CCCTTCBCCSS-------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHH---HHHH
T ss_pred CCCCccccccc-------cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHH---HHHH
Confidence 99999985432 12345799999999998 445678999999999999999999999975332221 1122
Q ss_pred HHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhh
Q 001238 998 DHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREI 1056 (1117)
Q Consensus 998 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~ 1056 (1117)
...... ..+.++...+..+.++++. |++.||++||++.++++.|+++
T Consensus 241 ~~~~~~------~~~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 241 MIREEG------LRPTIPEDCPPRLRNVIEL------CWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp HHHHSC------CCCCCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHTC
T ss_pred HHhccC------CCCCCCcccCHHHHHHHHH------HhcCChhhCcCHHHHHHHHHhC
Confidence 222211 1122333445566666665 9999999999999999999764
No 106
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=3.5e-38 Score=361.39 Aligned_cols=253 Identities=21% Similarity=0.310 Sum_probs=202.3
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC-----CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS-----DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|++.+.||+|+||+||+|.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++.+.+..|+
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 4688999999999999999975 46899999998642 12245779999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc---ceecccccc
Q 001238 850 FYDYMPNGTLGMLLHDGE-CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE---SCLADFGLA 925 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~---~kl~DfGla 925 (1117)
||||+++|+|.+.+.... ....+++..+..++.||++||+|||++ +|+||||||+||+++.++. +||+|||++
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 999999999988776432 223489999999999999999999999 9999999999999987654 999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKD 1005 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1117)
+...... .......||+.|+|||++....++.++||||+||++|||++|+.||... . .............
T Consensus 181 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~---~~~~~~i~~~~~~ 250 (351)
T 3c0i_A 181 IQLGESG----LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---K---ERLFEGIIKGKYK 250 (351)
T ss_dssp EECCTTS----CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---H---HHHHHHHHHTCCC
T ss_pred eEecCCC----eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---H---HHHHHHHHcCCCC
Confidence 8765422 1234567999999999999999999999999999999999999999652 1 1222222222211
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. .+......+..+.++++. |++.||++||++.++++
T Consensus 251 ~----~~~~~~~~s~~~~~li~~------~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 251 M----NPRQWSHISESAKDLVRR------MLMLDPAERITVYEALN 286 (351)
T ss_dssp C----CHHHHTTSCHHHHHHHHH------HTCSSTTTSCCHHHHHT
T ss_pred C----CccccccCCHHHHHHHHH------HCCCChhHCcCHHHHhc
Confidence 1 111112334455555554 99999999999999976
No 107
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=2.6e-38 Score=359.96 Aligned_cols=249 Identities=20% Similarity=0.306 Sum_probs=203.3
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCce
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~ 847 (1117)
...++|++.+.||+|+||+||+|+.+ +|+.||||+++... ....+.+..|.++++.+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34568999999999999999999864 68999999997532 23456688899999887 899999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
|+||||+++|+|.+++... +.+++.++..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 94 ~lv~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~ 167 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKE 167 (345)
T ss_dssp EEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEEeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhh
Confidence 9999999999999999764 3489999999999999999999999 999999999999999999999999999986
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
..... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||... ...+.........
T Consensus 168 ~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~---- 234 (345)
T 1xjd_A 168 NMLGD----AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ-----DEEELFHSIRMDN---- 234 (345)
T ss_dssp CCCTT----CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCC----
T ss_pred cccCC----CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHHHhCC----
Confidence 43221 1234568999999999999999999999999999999999999999642 2222333332222
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHH-HHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMK-DVA 1050 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~-~v~ 1050 (1117)
+.++...+..+.++++. |++.||++||++. ++.
T Consensus 235 ----~~~p~~~s~~~~~li~~------lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 235 ----PFYPRWLEKEAKDLLVK------LFVREPEKRLGVRGDIR 268 (345)
T ss_dssp ----CCCCTTSCHHHHHHHHH------HSCSSGGGSBTTBSCGG
T ss_pred ----CCCCcccCHHHHHHHHH------HhcCCHhHcCCChHHHH
Confidence 12233345556666655 9999999999987 654
No 108
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=2.7e-38 Score=358.74 Aligned_cols=259 Identities=24% Similarity=0.369 Sum_probs=201.7
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCc----EEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGL----TVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|++.+.||+|+||+||+|.+. +++ +||+|++.... .....++.+|+.++++++||||+++++++. .+..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 46888899999999999999853 444 37888775432 333456889999999999999999999886 466899
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 92 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 166 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHR--GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLP 166 (325)
T ss_dssp EEECCTTCBSHHHHHSSG--GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred EEEeCCCCCHHHHHHHcc--ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccC
Confidence 999999999999997642 3488999999999999999999999 99999999999999999999999999999875
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
..... .......||+.|+|||++....++.++||||||+++|||++ |+.||..... ......+. .....
T Consensus 167 ~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~--~~~~~~~~----~~~~~-- 236 (325)
T 3kex_A 167 PDDKQ--LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL--AEVPDLLE----KGERL-- 236 (325)
T ss_dssp CCTTC--CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT--THHHHHHH----TTCBC--
T ss_pred ccccc--ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH--HHHHHHHH----cCCCC--
Confidence 43221 22345578889999999999999999999999999999999 9999975322 22222222 11110
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
..+...+..+..++.. ||+.||++||++.++++.|+++...+
T Consensus 237 ----~~~~~~~~~~~~li~~------~l~~dp~~Rps~~el~~~l~~~~~~~ 278 (325)
T 3kex_A 237 ----AQPQICTIDVYMVMVK------CWMIDENIRPTFKELANEFTRMARDP 278 (325)
T ss_dssp ----CCCTTBCTTTTHHHHH------HTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred ----CCCCcCcHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 1111122234444444 99999999999999999999886543
No 109
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=7e-38 Score=370.97 Aligned_cols=253 Identities=28% Similarity=0.414 Sum_probs=206.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCC-ceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRK-TKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~-~~~lv~e~ 853 (1117)
.++|++.+.||+|+||+||+|.+. |+.||||+++... ..+.|.+|++++++++|||||++++++...+ ..++||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 457888999999999999999884 7899999997643 4578999999999999999999999987665 78999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
+++|+|.+++..... ..+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 269 ~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-- 342 (450)
T 1k9a_A 269 MAKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 342 (450)
T ss_dssp CTTCBHHHHHHHHCT-TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred cCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc--
Confidence 999999999986432 3378999999999999999999999 9999999999999999999999999999854321
Q ss_pred CccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.....+++.|+|||++....++.++|||||||++|||++ |+.||..... ..+...+. .... .
T Consensus 343 -----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~~~i~----~~~~------~ 405 (450)
T 1k9a_A 343 -----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVVPRVE----KGYK------M 405 (450)
T ss_dssp ---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT--TTHHHHHH----TTCC------C
T ss_pred -----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHH----cCCC------C
Confidence 112357889999999999999999999999999999998 9999975422 22222222 1111 1
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
..+...+..+.++++. ||+.||++||++.++++.|+.+...
T Consensus 406 ~~p~~~~~~l~~li~~------cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 406 DAPDGCPPAVYDVMKN------CWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHH------HcCCChhHCcCHHHHHHHHHHHHHh
Confidence 1223344555665555 9999999999999999999998754
No 110
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=5.6e-38 Score=371.98 Aligned_cols=258 Identities=27% Similarity=0.427 Sum_probs=203.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.++|++.+.||+|+||+||+|.+.++..||||+++... ...++|.+|++++++++||||+++++++.+ +..++||||+
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~ 260 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 260 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhh
Confidence 35688889999999999999998888889999998643 346789999999999999999999999876 6789999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
++|+|.+++.... ...+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||+++......
T Consensus 261 ~~gsL~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-- 334 (452)
T 1fmk_A 261 SKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-- 334 (452)
T ss_dssp TTCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred cCCCHHHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCc--
Confidence 9999999997532 23489999999999999999999999 99999999999999999999999999998765321
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
........+|+.|+|||++....++.++||||||+++|||++ |+.||.+. ...+......... . ..
T Consensus 335 -~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~-----~~~~~~~~i~~~~-~------~~ 401 (452)
T 1fmk_A 335 -YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVERGY-R------MP 401 (452)
T ss_dssp ---------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTC-C------CC
T ss_pred -eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCC-C------CC
Confidence 122234457889999999999999999999999999999999 99999642 1122222222211 1 11
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.+...+..+.+++.. ||+.+|++||+++++++.|+.+...
T Consensus 402 ~~~~~~~~l~~li~~------cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 402 CPPECPESLHDLMCQ------CWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp CCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred CCCCCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHhcc
Confidence 122334455555554 9999999999999999999988654
No 111
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=9.1e-38 Score=350.64 Aligned_cols=264 Identities=23% Similarity=0.373 Sum_probs=207.2
Q ss_pred cCCCCCCeeeecCCeEEEEEE-----cCCCcEEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeecC--Cce
Q 001238 776 RSLTAGNIIGQGRSGIVYKVT-----LPSGLTVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGANR--KTK 847 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~-----~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~--~~~ 847 (1117)
+.|++.+.||+|+||.||+|+ ..+++.||||+++.. .....+.+.+|++++++++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 458888999999999999998 346899999999754 333457899999999999999999999999876 668
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||+++|+|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 175 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKA 175 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEEeCCCCcHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECccccccc
Confidence 99999999999999996542 3489999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCC---------CCChhHHHHHHH
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASF---------PDGQHVIQWVRD 998 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~---------~~~~~~~~~~~~ 998 (1117)
..... ..........||..|+|||++.+..++.++||||+|+++|||++|+.|+.... ..+......+..
T Consensus 176 ~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (302)
T 4e5w_A 176 IETDK-EYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVN 254 (302)
T ss_dssp CCTTC-CEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHH
T ss_pred ccCCC-cceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHH
Confidence 75432 22233445678899999999999999999999999999999999999864310 011112222222
Q ss_pred HHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhh
Q 001238 999 HLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIR 1057 (1117)
Q Consensus 999 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~ 1057 (1117)
....... ...+...+..+.++++. |++.||++||++.++++.|+++.
T Consensus 255 ~~~~~~~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 255 TLKEGKR------LPCPPNCPDEVYQLMRK------CWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHTTCC------CCCCTTCCHHHHHHHHH------TTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhccCC------CCCCCCCCHHHHHHHHH------HcCCCCCCCCCHHHHHHHHHHHh
Confidence 2222211 11223344455665555 99999999999999999999874
No 112
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.9e-38 Score=349.98 Aligned_cols=249 Identities=21% Similarity=0.305 Sum_probs=194.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc--------------------------cchHHHHHHHHHHh
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK--------------------------ISTGAFSSEIATLS 827 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 827 (1117)
.++|++.+.||+|+||+||+|.. .+++.||||++..... ...+++.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 35788999999999999999975 4689999999875421 12356889999999
Q ss_pred ccCCCCcceEEeeeec--CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccc
Q 001238 828 RIRHRNIVRLLGWGAN--RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVK 905 (1117)
Q Consensus 828 ~l~H~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlk 905 (1117)
+++||||+++++++.+ .+..++||||+++++|.+++.. +.+++.++..++.|+++||+|||++ +|+|||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlk 164 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL----KPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIK 164 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCC
Confidence 9999999999999886 5678999999999999887643 3489999999999999999999999 99999999
Q ss_pred cCeEEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCC---CCcCCCeeehhhhHHHHHhCCCCC
Q 001238 906 SHNILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTK---ISEKSDVYSYGVVLLEIITGKKPV 982 (1117)
Q Consensus 906 p~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~SlG~vl~ell~g~~P~ 982 (1117)
|+||+++.++.+||+|||+++...... .......||+.|+|||++.... ++.++|||||||++|||++|+.||
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf 240 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGSD----ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPF 240 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSS----CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHEEECCCCCEEEecCCCcccccccc----ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCC
Confidence 999999999999999999998765322 1223457999999999987654 478899999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 983 DASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
... ................ +. ....+..+.+++.. |++.||++||++.|+++
T Consensus 241 ~~~-----~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~~li~~------~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 241 MDE-----RIMCLHSKIKSQALEF-----PD-QPDIAEDLKDLITR------MLDKNPESRIVVPEIKL 292 (298)
T ss_dssp CCS-----SHHHHHHHHHHCCCCC-----CS-SSCCCHHHHHHHHH------HTCSCTTTSCCHHHHTT
T ss_pred CCc-----cHHHHHHHHhcccCCC-----CC-ccccCHHHHHHHHH------HhhcChhhCCCHHHHhc
Confidence 642 1222222222221111 11 12234455555555 99999999999999865
No 113
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=9.2e-38 Score=352.52 Aligned_cols=263 Identities=27% Similarity=0.404 Sum_probs=212.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc------CCCcEEEEEEeecCCc-cchHHHHHHHHHHhcc-CCCCcceEEeeeecCCc
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL------PSGLTVAVKRFRASDK-ISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKT 846 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~ 846 (1117)
.++|++.+.||+|+||+||+|.+ .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++...+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 45788999999999999999973 3578999999975533 3356789999999999 99999999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCC---------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE
Q 001238 847 KLLFYDYMPNGTLGMLLHDGEC---------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL 911 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~---------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill 911 (1117)
.++||||+++|+|.+++..... ...+++.+++.++.|+++||+|||++ +|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEE
Confidence 9999999999999999976432 12489999999999999999999999 99999999999999
Q ss_pred cCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCCh
Q 001238 912 GERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQ 990 (1117)
Q Consensus 912 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~ 990 (1117)
+.++.+||+|||+++....... ........+|+.|+|||++....++.++||||||+++|||++ |+.||..... ..
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~ 255 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSN--YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV-DS 255 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTT--SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS-SH
T ss_pred cCCCCEEEcccccccccccccc--ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc-hh
Confidence 9999999999999987754322 223344568889999999999999999999999999999999 9999975322 22
Q ss_pred hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.....+. .... +..+...+..+.++++. |++.||++||++.++++.|+++..+
T Consensus 256 ~~~~~~~----~~~~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 256 KFYKMIK----EGFR------MLSPEHAPAEMYDIMKT------CWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp HHHHHHH----HTCC------CCCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhc----cCCC------CCCcccCCHHHHHHHHH------HcCCCchhCcCHHHHHHHHHHHHHH
Confidence 2222222 1111 11122334455555555 9999999999999999999987654
No 114
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=9e-38 Score=359.73 Aligned_cols=249 Identities=21% Similarity=0.287 Sum_probs=202.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||.||+|.. .+++.||+|++... .....+.+.+|+++++.++|||||++++++.+.+..|+||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 4688999999999999999975 45889999998653 2334567889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 95 e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 168 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQN---VHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE 168 (384)
T ss_dssp CCCTTEEHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence 999999999999864 3489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCccccCCccccccccCChhhhcc---CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANM---TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
......+||+.|+|||++.. ..++.++|||||||++|||++|+.||...... .....+.......
T Consensus 169 -----~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~--~~~~~~~~~~~~~----- 236 (384)
T 4fr4_A 169 -----TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST--SSKEIVHTFETTV----- 236 (384)
T ss_dssp -----CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS--CHHHHHHHHHHCC-----
T ss_pred -----CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc--cHHHHHHHHhhcc-----
Confidence 23345689999999999864 45899999999999999999999999753222 2222233222221
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCC-HHHHHH
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPT-MKDVAA 1051 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs-~~~v~~ 1051 (1117)
..++...+..+..+++. |++.||++||+ +.++.+
T Consensus 237 ---~~~p~~~s~~~~~li~~------lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 237 ---VTYPSAWSQEMVSLLKK------LLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp ---CCCCTTSCHHHHHHHHH------HSCSSGGGSCCSHHHHHT
T ss_pred ---cCCCCcCCHHHHHHHHH------HhcCCHhHhcccHHHHHc
Confidence 12233344556666655 99999999998 676654
No 115
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=7.7e-38 Score=354.91 Aligned_cols=247 Identities=25% Similarity=0.356 Sum_probs=193.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEc----CCCcEEEEEEeecCC----ccchHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL----PSGLTVAVKRFRASD----KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
++|++.+.||+|+||.||+|+. .+|+.||+|+++... ......+.+|++++++++||||+++++++...+..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 5688999999999999999986 478999999997542 22345678899999999999999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
|+||||+++|+|.+++... +.+++.++..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 97 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 97 YLILEYLSGGELFMQLERE---GIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEECCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEeCCCCCcHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 9999999999999998754 3488999999999999999999999 999999999999999999999999999986
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
..... .......||+.|+|||++....++.++||||||+++|||++|+.||... .....+........
T Consensus 171 ~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~i~~~~~--- 238 (327)
T 3a62_A 171 SIHDG----TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE-----NRKKTIDKILKCKL--- 238 (327)
T ss_dssp ------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHTCC---
T ss_pred cccCC----ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhCCC---
Confidence 53321 1233567999999999999899999999999999999999999999642 22233333333221
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-----CHHHHHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-----TMKDVAA 1051 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-----s~~~v~~ 1051 (1117)
.++...+..+.++++. |++.||++|| ++.++++
T Consensus 239 -----~~p~~~~~~~~~li~~------~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 239 -----NLPPYLTQEARDLLKK------LLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp -----CCCTTSCHHHHHHHHH------HSCSCGGGSTTSSTTTHHHHHH
T ss_pred -----CCCCCCCHHHHHHHHH------HHhcCHhhccCCCCCCHHHHHc
Confidence 1223344556666665 9999999999 6777766
No 116
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.9e-38 Score=358.20 Aligned_cols=247 Identities=23% Similarity=0.318 Sum_probs=199.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|.+.+.||+|+||+||+|.+ .+++.||||++... .......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 35789999999999999999985 57899999998743 122345789999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+ +|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||+++....
T Consensus 88 ~E~~-~g~l~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~ 160 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEK---KRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD 160 (336)
T ss_dssp ECCC-CEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT
T ss_pred EECC-CCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccC
Confidence 9999 78888887654 3489999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
.. .....+||+.|+|||++.+..+ ++++||||+||++|||++|+.||+....... ... ...
T Consensus 161 ~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~---------~~~----i~~ 222 (336)
T 3h4j_B 161 GN-----FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL---------FKK----VNS 222 (336)
T ss_dssp SB-----TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC---------BCC----CCS
T ss_pred Cc-----ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH---------HHH----HHc
Confidence 21 2335579999999999988776 6899999999999999999999975322110 000 000
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
.....+...+....++++. |++.||.+|||+.|+++.
T Consensus 223 ~~~~~p~~~s~~~~~li~~------~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 223 CVYVMPDFLSPGAQSLIRR------MIVADPMQRITIQEIRRD 259 (336)
T ss_dssp SCCCCCTTSCHHHHHHHHT------TSCSSGGGSCCHHHHTTC
T ss_pred CCCCCcccCCHHHHHHHHH------HcCCChhHCcCHHHHHhC
Confidence 1112233344455555554 999999999999999874
No 117
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=8.6e-38 Score=356.93 Aligned_cols=244 Identities=20% Similarity=0.246 Sum_probs=203.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 46888899999999999999854 68999999997532 234567889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++.++..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~ 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR 194 (350)
T ss_dssp ECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred cCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCC
Confidence 999999999999764 3489999999999999999999999 9999999999999999999999999999876431
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
....+||+.|+|||++.+..++.++|||||||++|||++|+.||... ...+..........
T Consensus 195 -------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~------- 255 (350)
T 1rdq_E 195 -------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-----QPIQIYEKIVSGKV------- 255 (350)
T ss_dssp -------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-------
T ss_pred -------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC-----CHHHHHHHHHcCCC-------
Confidence 23468999999999999999999999999999999999999999642 22333333333321
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCC-----HHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPT-----MKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs-----~~~v~~ 1051 (1117)
.++...+..+.++++. |++.||++||+ ++++.+
T Consensus 256 -~~p~~~~~~~~~li~~------lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 256 -RFPSHFSSDLKDLLRN------LLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp -CCCTTCCHHHHHHHHH------HSCSCTTTCTTSSTTTTHHHHT
T ss_pred -CCCCCCCHHHHHHHHH------HhhcCHHhccCCccCCHHHHHh
Confidence 1233445566666665 99999999998 777765
No 118
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=7.7e-38 Score=356.80 Aligned_cols=247 Identities=19% Similarity=0.268 Sum_probs=198.3
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv 850 (1117)
++|++.+.||+|+||.||+|+.+ +++.||+|+++... ....+.+.+|+++++++ +||||+++++++.+.+..|+|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 46888999999999999999864 68999999997642 22345678899999988 899999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++|+|.+++... +.+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~e~~~gg~L~~~l~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ---RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp ECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EeCCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 9999999999998754 3489999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCC----hhHHHHHHHHHhcCCCC
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDG----QHVIQWVRDHLKSKKDP 1006 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~----~~~~~~~~~~~~~~~~~ 1006 (1117)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..............
T Consensus 163 ~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~--- 235 (345)
T 3a8x_A 163 PG----DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ--- 235 (345)
T ss_dssp TT----CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCC---
T ss_pred CC----CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCC---
Confidence 21 12345689999999999999999999999999999999999999996421111 11111222222221
Q ss_pred ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCH
Q 001238 1007 VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTM 1046 (1117)
Q Consensus 1007 ~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~ 1046 (1117)
..++...+....++++. |++.||++||++
T Consensus 236 -----~~~p~~~s~~~~~li~~------lL~~dP~~R~~~ 264 (345)
T 3a8x_A 236 -----IRIPRSLSVKAASVLKS------FLNKDPKERLGC 264 (345)
T ss_dssp -----CCCCTTSCHHHHHHHHH------HTCSSTTTSTTC
T ss_pred -----CCCCCCCCHHHHHHHHH------HhcCCHhHCCCC
Confidence 12233444556666655 999999999985
No 119
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1e-37 Score=360.53 Aligned_cols=253 Identities=16% Similarity=0.262 Sum_probs=205.6
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
..++|++.+.||+|+||+||+|.. .+|+.||+|++..........+.+|++++++++||||+++++++.+.+..++|||
T Consensus 49 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E 128 (387)
T 1kob_A 49 VYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE 128 (387)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred cccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence 456899999999999999999975 4689999999987655556678999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC--CCcceeccccccccccC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE--RYESCLADFGLARLVED 930 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~--~~~~kl~DfGla~~~~~ 930 (1117)
|+++|+|.+++.... ..+++.++..++.||+.||+|||++ +|+||||||+||+++. ++.+||+|||+++....
T Consensus 129 ~~~gg~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~ 203 (387)
T 1kob_A 129 FLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP 203 (387)
T ss_dssp CCCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred cCCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence 999999999987642 3489999999999999999999999 9999999999999974 47799999999987654
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. ......||+.|+|||++....++.++|||||||++|||++|+.||... .....+......... .
T Consensus 204 ~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~-----~~~~~~~~i~~~~~~----~ 269 (387)
T 1kob_A 204 DE-----IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE-----DDLETLQNVKRCDWE----F 269 (387)
T ss_dssp TS-----CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHHCCCC----C
T ss_pred Cc-----ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCCC----C
Confidence 21 122347999999999999999999999999999999999999999642 122223322222211 1
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
++......+..+.++++ .|++.||++||++.++++
T Consensus 270 ~~~~~~~~s~~~~~li~------~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 270 DEDAFSSVSPEAKDFIK------NLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp CSSTTTTSCHHHHHHHH------TTSCSSGGGSCCHHHHHT
T ss_pred CccccccCCHHHHHHHH------HHcCCChhHCcCHHHHhh
Confidence 11222233445555554 499999999999999986
No 120
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=5.2e-38 Score=376.27 Aligned_cols=258 Identities=27% Similarity=0.413 Sum_probs=210.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCC-CcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPS-GLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
..+|++.+.||+|+||.||+|.+.. ++.||||+++... ...++|.+|++++++++|||||++++++...+..++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 3468888999999999999998654 8899999997543 3567899999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
+++|+|.+++..... ..+++..+..++.||++||+|||++ +|+||||||+|||++.++.+||+|||+++.....
T Consensus 298 ~~~g~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-- 371 (495)
T 1opk_A 298 MTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD-- 371 (495)
T ss_dssp CTTCBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTC--
T ss_pred cCCCCHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCC--
Confidence 999999999976432 3489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.........+++.|+|||++....++.++|||||||++|||++ |+.||.... ...+.+.+. .... .
T Consensus 372 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~~~~~~~----~~~~------~ 438 (495)
T 1opk_A 372 -TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLE----KDYR------M 438 (495)
T ss_dssp -CEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHHHH----TTCC------C
T ss_pred -ceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHH----cCCC------C
Confidence 1223334457789999999999999999999999999999999 999997532 222222222 1111 1
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
..+...+..+.+++.. ||+.||++||++.+|++.|+.+.+
T Consensus 439 ~~~~~~~~~l~~li~~------cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 439 ERPEGCPEKVYELMRA------CWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHH------HcCcChhHCcCHHHHHHHHHHHHh
Confidence 1223334455555554 999999999999999999998754
No 121
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=8.6e-38 Score=356.87 Aligned_cols=248 Identities=19% Similarity=0.261 Sum_probs=203.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecC---CccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRAS---DKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.+.||+|+||+||+|+.+ +|+.||||+++.. .....+.+.+|.++++.+ +||+|+++++++.+.+..|+
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 457899999999999999999865 4889999999753 223456788999999988 79999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++... +.+++..++.++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 99 v~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 99999999999999754 3489999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||... ...+..........
T Consensus 173 ~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~~----- 238 (353)
T 2i0e_A 173 WDG----VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQSIMEHNV----- 238 (353)
T ss_dssp CTT----CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-----
T ss_pred cCC----cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhCCC-----
Confidence 221 1234568999999999999999999999999999999999999999642 22233333333221
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCC-----HHHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPT-----MKDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs-----~~~v~~ 1051 (1117)
.++...+..+.++++. |++.||++||+ +.++.+
T Consensus 239 ---~~p~~~s~~~~~li~~------lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 239 ---AYPKSMSKEAVAICKG------LMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp ---CCCTTSCHHHHHHHHH------HTCSCTTSCTTCSTTHHHHHHT
T ss_pred ---CCCCCCCHHHHHHHHH------HhhcCHHHcCCCCCCCHHHHhc
Confidence 1233444556666655 99999999995 466654
No 122
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=6.6e-38 Score=357.05 Aligned_cols=262 Identities=25% Similarity=0.370 Sum_probs=209.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc--------CCCcEEEEEEeecCC-ccchHHHHHHHHHHhcc-CCCCcceEEeeeecC
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL--------PSGLTVAVKRFRASD-KISTGAFSSEIATLSRI-RHRNIVRLLGWGANR 844 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~--------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~ 844 (1117)
.++|++.+.||+|+||+||+|++ .+++.||||+++... ....+++.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 45789999999999999999975 356789999997543 23356788999999999 899999999999999
Q ss_pred CceEEEEEecCCCChhhhhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE
Q 001238 845 KTKLLFYDYMPNGTLGMLLHDGEC-------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL 911 (1117)
Q Consensus 845 ~~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill 911 (1117)
+..++||||+++|+|.+++..... ...+++.+++.++.|+++||+|||++ +|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEE
Confidence 999999999999999999986532 12488999999999999999999999 99999999999999
Q ss_pred cCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCCh
Q 001238 912 GERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQ 990 (1117)
Q Consensus 912 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~ 990 (1117)
+.++.+||+|||+++...... .........+|+.|+|||++.+..++.++||||||+++|||++ |+.||...
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~----- 263 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNID--YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI----- 263 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTS--SEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC-----
T ss_pred cCCCCEEEccccccccccccc--cccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC-----
Confidence 999999999999998765422 1223334567889999999998899999999999999999999 99999642
Q ss_pred hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
...+......... . +..+...+..+.++++. |++.+|++||++.++++.|+++...
T Consensus 264 ~~~~~~~~~~~~~-~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~~L~~l~~~ 319 (334)
T 2pvf_A 264 PVEELFKLLKEGH-R------MDKPANCTNELYMMMRD------CWHAVPSQRPTFKQLVEDLDRILTL 319 (334)
T ss_dssp CHHHHHHHHHHTC-C------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCC-C------CCCCccCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHhc
Confidence 1122222222211 1 11223334455555554 9999999999999999999988654
No 123
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=5.1e-38 Score=356.65 Aligned_cols=258 Identities=21% Similarity=0.338 Sum_probs=198.6
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCc----EEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGL----TVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|++.+.||+|+||+||+|.+. +++ +||+|+++.. .....+++.+|++++++++||||+++++++.+.. .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 46888999999999999999853 444 4688887543 2345578999999999999999999999998754 789
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... +.+++..++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 94 v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEECCTTCBHHHHHHHST--TSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 999999999999997643 3489999999999999999999999 99999999999999999999999999998775
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||.... .......+. .....
T Consensus 169 ~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~~~----~~~~~-- 238 (327)
T 3poz_A 169 AEEK--EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILE----KGERL-- 238 (327)
T ss_dssp TTCC---------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHH----TTCCC--
T ss_pred CCcc--cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC--HHHHHHHHH----cCCCC--
Confidence 4322 122234467889999999999999999999999999999999 999997532 222222222 11111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
..+...+..+..++ ..||+.+|++||++.++++.|+.+...
T Consensus 239 ----~~~~~~~~~~~~li------~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 239 ----PQPPICTIDVYMIM------VKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp ----CCCTTBCHHHHHHH------HHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred ----CCCccCCHHHHHHH------HHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 11122233444444 459999999999999999999988754
No 124
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1.1e-37 Score=347.62 Aligned_cols=261 Identities=29% Similarity=0.459 Sum_probs=194.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.++||+|+||+||+|+.. ..||||+++... ....+.+.+|++++++++||||+++++++ ..+..++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 357999999999999999999864 369999987543 23346789999999999999999999965 4567899999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 100 ~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 174 (289)
T 3og7_A 100 WCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS 174 (289)
T ss_dssp CCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred ecCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceecccccccc
Confidence 999999999997543 3489999999999999999999999 99999999999999999999999999998654321
Q ss_pred CCccccCCccccccccCChhhhc---cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 933 GGSFSANPQFAGSYGYIAPEYAN---MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
. ........||+.|+|||++. ...++.++||||||+++|||++|+.||..... ....... .........
T Consensus 175 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~~~~~----~~~~~~~~~- 246 (289)
T 3og7_A 175 G--SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINN-RDQIIEM----VGRGSLSPD- 246 (289)
T ss_dssp -----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCC-HHHHHHH----HHHTSCCCC-
T ss_pred c--cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccch-HHHHHHH----hcccccCcc-
Confidence 1 12234567999999999986 56788899999999999999999999965321 1122222 211111110
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
.+.+....+..+.+++.. |++.+|++||++.++++.|+++.+
T Consensus 247 -~~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 247 -LSKVRSNCPKRMKRLMAE------CLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp -TTSSCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred -hhhccccCCHHHHHHHHH------HccCChhhCCCHHHHHHHHHHHhh
Confidence 112223334455665555 999999999999999999998865
No 125
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-37 Score=355.04 Aligned_cols=272 Identities=26% Similarity=0.385 Sum_probs=201.6
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhcc--CCCCcceEEeeeecC----Cce
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRI--RHRNIVRLLGWGANR----KTK 847 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~H~niv~l~~~~~~~----~~~ 847 (1117)
..++|++.+.||+|+||.||+|+.. ++.||||++.... ...+.+|.+++... +||||+++++++... ...
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 110 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL 110 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence 3468999999999999999999874 8999999986432 34455666666554 899999999998877 678
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC-----CCceeeeccccCeEEEcCCCcceeccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDC-----VPAILHRDVKSHNILLGERYESCLADF 922 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivHrDlkp~Nill~~~~~~kl~Df 922 (1117)
++||||+++|+|.++++.. .+++..++.++.|++.||+|||+++ .++|+||||||+||+++.++.+||+||
T Consensus 111 ~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Df 186 (337)
T 3mdy_A 111 YLITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADL 186 (337)
T ss_dssp EEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCC
T ss_pred EEEEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeC
Confidence 9999999999999999754 3899999999999999999999762 348999999999999999999999999
Q ss_pred cccccccCCCCCccccCCccccccccCChhhhccCCCCcC------CCeeehhhhHHHHHhC----------CCCCCCCC
Q 001238 923 GLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEK------SDVYSYGVVLLEIITG----------KKPVDASF 986 (1117)
Q Consensus 923 Gla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~SlG~vl~ell~g----------~~P~~~~~ 986 (1117)
|+++.................||+.|+|||++.+..++.+ +|||||||++|||++| +.||....
T Consensus 187 g~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~ 266 (337)
T 3mdy_A 187 GLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLV 266 (337)
T ss_dssp TTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred CCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhc
Confidence 9998765433322223345689999999999987766665 9999999999999999 67775543
Q ss_pred CCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 987 PDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
......... ........ ..+.++...... ........++..||+.||++||++.++++.|+++.+..
T Consensus 267 ~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~-~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 267 PSDPSYEDM-REIVCIKK-----LRPSFPNRWSSD-ECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp CSSCCHHHH-HHHHTTSC-----CCCCCCGGGGGS-HHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred CCCCchhhh-HHHHhhhc-----cCccccccchhh-HHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence 333332222 22222111 111111111000 01111224555699999999999999999999987654
No 126
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=1.3e-37 Score=344.96 Aligned_cols=258 Identities=27% Similarity=0.445 Sum_probs=208.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.++|++.+.||+|+||+||+|...+++.||||+++... ...+.+.+|++++++++||||+++++++.. +..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecC
Confidence 35788899999999999999998888899999997543 346789999999999999999999998764 5689999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
++++|.+++..... ..+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||+++......
T Consensus 90 ~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 163 (279)
T 1qpc_A 90 ENGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-- 163 (279)
T ss_dssp TTCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC--
T ss_pred CCCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcc--
Confidence 99999999976421 2489999999999999999999999 99999999999999999999999999998765421
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
........+++.|+|||++....++.++||||||+++|||++ |+.||... ...+......... . +.
T Consensus 164 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-----~~~~~~~~~~~~~-~------~~ 230 (279)
T 1qpc_A 164 -YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM-----TNPEVIQNLERGY-R------MV 230 (279)
T ss_dssp -EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTC-C------CC
T ss_pred -cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc-----CHHHHHHHHhccc-C------CC
Confidence 222334567889999999998899999999999999999999 99999642 1122222222111 1 11
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.+...+..+.+++.. |++.+|++||++.++++.|+++...
T Consensus 231 ~~~~~~~~l~~li~~------~l~~~p~~Rps~~~l~~~l~~~~~~ 270 (279)
T 1qpc_A 231 RPDNCPEELYQLMRL------CWKERPEDRPTFDYLRSVLEDFFTA 270 (279)
T ss_dssp CCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHH------HhccChhhCCCHHHHHHHHHHHHHh
Confidence 223334455555554 9999999999999999999988654
No 127
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.7e-38 Score=358.39 Aligned_cols=264 Identities=22% Similarity=0.258 Sum_probs=203.1
Q ss_pred hHHHhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC-----CccchHHHHHHHHHHhccCCCCcceEEeeeec
Q 001238 770 SIGDATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS-----DKISTGAFSSEIATLSRIRHRNIVRLLGWGAN 843 (1117)
Q Consensus 770 ~~~~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~ 843 (1117)
++....++|++.+.||+|+||+||+|.. .+++.||+|++... .....+.+.+|++++++++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 4556778899999999999999999975 56889999998643 23445679999999999999999999999999
Q ss_pred CCceEEEEEecCCCChhhhhcCCCC-------------------------------------CCCCCHHHHHHHHHHHHH
Q 001238 844 RKTKLLFYDYMPNGTLGMLLHDGEC-------------------------------------AGLLEWDTRFKIALGVAE 886 (1117)
Q Consensus 844 ~~~~~lv~e~~~~gsL~~~l~~~~~-------------------------------------~~~l~~~~~~~i~~~i~~ 886 (1117)
.+..++||||+++|+|.+++..... ...+++..+..++.|+++
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999852100 112457788899999999
Q ss_pred HHHHHhccCCCceeeeccccCeEEEcCCC--cceeccccccccccCCCCCccccCCccccccccCChhhhcc--CCCCcC
Q 001238 887 GLSYLHHDCVPAILHRDVKSHNILLGERY--ESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM--TKISEK 962 (1117)
Q Consensus 887 ~L~~LH~~~~~~ivHrDlkp~Nill~~~~--~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~ 962 (1117)
||+|||++ +|+||||||+||+++.++ .+||+|||+++.................||+.|+|||++.. ..++.+
T Consensus 180 ~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~ 256 (345)
T 3hko_A 180 ALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPK 256 (345)
T ss_dssp HHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTH
T ss_pred HHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcH
Confidence 99999999 999999999999998776 89999999998765433333333456679999999999875 678999
Q ss_pred CCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCC
Q 001238 963 SDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAED 1042 (1117)
Q Consensus 963 ~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~ 1042 (1117)
+||||||+++|||++|+.||... ...+.............. +.. ...+..+.++++. |++.+|++
T Consensus 257 ~DiwslG~il~el~~g~~pf~~~-----~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~li~~------~l~~~p~~ 321 (345)
T 3hko_A 257 CDAWSAGVLLHLLLMGAVPFPGV-----NDADTISQVLNKKLCFEN---PNY-NVLSPLARDLLSN------LLNRNVDE 321 (345)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCCTTS---GGG-GGSCHHHHHHHHH------HSCSCTTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC-----ChHHHHHHHHhcccccCC---ccc-ccCCHHHHHHHHH------HcCCChhH
Confidence 99999999999999999999642 222333333333221111 111 1223455555555 99999999
Q ss_pred CCCHHHHHH
Q 001238 1043 RPTMKDVAA 1051 (1117)
Q Consensus 1043 RPs~~~v~~ 1051 (1117)
||++.++++
T Consensus 322 Rps~~~~l~ 330 (345)
T 3hko_A 322 RFDAMRALQ 330 (345)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHhc
Confidence 999999987
No 128
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=3e-38 Score=367.01 Aligned_cols=255 Identities=21% Similarity=0.266 Sum_probs=204.2
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
...++|++.++||+|+||+||+|+.+ +++.||+|+++.. .....+.+.+|+++++.++|||||++++++.+.+..|
T Consensus 66 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~ 145 (410)
T 3v8s_A 66 MKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLY 145 (410)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEE
Confidence 34578999999999999999999864 5899999999752 1223446889999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
+||||+++|+|.++++.. .+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 146 lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~ 218 (410)
T 3v8s_A 146 MVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKM 218 (410)
T ss_dssp EEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEee
Confidence 999999999999999754 389999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCC----CCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTK----ISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
.... .......+||+.|+|||++.... ++.++|||||||++|||++|+.||... ..............
T Consensus 219 ~~~~---~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-----~~~~~~~~i~~~~~ 290 (410)
T 3v8s_A 219 NKEG---MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-----SLVGTYSKIMNHKN 290 (410)
T ss_dssp CTTS---EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTHHH
T ss_pred ccCC---cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC-----ChhhHHHHHHhccc
Confidence 5321 22344678999999999997655 889999999999999999999999642 22222333222110
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCC--CCCHHHHHHH
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAED--RPTMKDVAAL 1052 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~--RPs~~~v~~~ 1052 (1117)
... .|. ....+.....+++. |+..+|.+ ||++.||.+.
T Consensus 291 ~~~---~p~-~~~~s~~~~~li~~------lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 291 SLT---FPD-DNDISKEAKNLICA------FLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp HCC---CCT-TCCCCHHHHHHHHH------HSSCGGGCTTSSCHHHHHTS
T ss_pred ccc---CCC-cccccHHHHHHHHH------HccChhhhCCCCCHHHHhcC
Confidence 000 011 12234456666655 99989988 9999999873
No 129
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=7.1e-38 Score=356.56 Aligned_cols=254 Identities=20% Similarity=0.312 Sum_probs=196.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCC-------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRK------- 845 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~------- 845 (1117)
.++|++.+.||+|+||+||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 356888999999999999999865 79999999997543 334567999999999999999999999886543
Q ss_pred --------------------------------------------------ceEEEEEecCCCChhhhhcCCCCCCCCCHH
Q 001238 846 --------------------------------------------------TKLLFYDYMPNGTLGMLLHDGECAGLLEWD 875 (1117)
Q Consensus 846 --------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~ 875 (1117)
..++||||+++|+|.+++.........++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 278999999999999999887655567888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCc--------cccCCccccccc
Q 001238 876 TRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGS--------FSANPQFAGSYG 947 (1117)
Q Consensus 876 ~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~--------~~~~~~~~gt~~ 947 (1117)
.++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......... ........||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 8999999999999999999 99999999999999999999999999998776532111 122345679999
Q ss_pred cCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHH
Q 001238 948 YIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQ 1027 (1117)
Q Consensus 948 y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 1027 (1117)
|+|||++.+..++.++||||+|+++|||++|..|+. ........... ...+ ...........
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~-------~~~~~~~~~~~-~~~~------~~~~~~~~~~~---- 303 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM-------ERVRIITDVRN-LKFP------LLFTQKYPQEH---- 303 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHH-------HHHHHHHHHHT-TCCC------HHHHHHCHHHH----
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChh-------HHHHHHHHhhc-cCCC------cccccCChhHH----
Confidence 999999999999999999999999999999877652 11122222111 1100 00000111223
Q ss_pred HHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1028 ALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1028 ~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.++..|++.||++||++.++++
T Consensus 304 --~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 304 --MMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp --HHHHHHHCSSGGGSCCHHHHHH
T ss_pred --HHHHHHccCCCCcCCCHHHHhh
Confidence 3445599999999999999986
No 130
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.4e-37 Score=349.42 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=161.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|... +|+.||+|+++... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 357999999999999999999854 68999999997543 2344678899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 853 YMPNGTLGMLLHDGE---CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
|++ |+|.+++.... ....+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 58988876431 123489999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..
T Consensus 160 ~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 211 (317)
T 2pmi_A 160 IPV----NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPG 211 (317)
T ss_dssp SCC----CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCc----ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 321 12234578999999999876 4689999999999999999999999965
No 131
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=6.8e-38 Score=364.87 Aligned_cols=207 Identities=20% Similarity=0.213 Sum_probs=177.7
Q ss_pred ccCCCCCCeeeec--CCeEEEEEEcC-CCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQG--RSGIVYKVTLP-SGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G--~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.++||+| +||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4578999999999 99999999864 69999999997543 2334568889999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++..... +.+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||.+....
T Consensus 104 v~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFM-DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEECCTTCBHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEccCCCCHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 9999999999999976532 3489999999999999999999999 99999999999999999999999999987654
Q ss_pred CCCCC---ccccCCccccccccCChhhhcc--CCCCcCCCeeehhhhHHHHHhCCCCCCCC
Q 001238 930 DDSGG---SFSANPQFAGSYGYIAPEYANM--TKISEKSDVYSYGVVLLEIITGKKPVDAS 985 (1117)
Q Consensus 930 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~vl~ell~g~~P~~~~ 985 (1117)
..... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||...
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 240 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM 240 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence 32111 1112233478999999999987 67999999999999999999999999753
No 132
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=8.6e-38 Score=346.89 Aligned_cols=257 Identities=24% Similarity=0.387 Sum_probs=195.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCC----CcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPS----GLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.+.||+|+||+||+|.... +..||+|+++... ....+.+.+|+.++++++||||+++++++. ++..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 3578889999999999999997532 5579999987542 333567899999999999999999999874 467899
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 93 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 167 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 167 (281)
T ss_dssp EEECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred EEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccC
Confidence 999999999999997643 3489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... .......+|+.|+|||++....++.++||||||+++|||++ |+.||.... .......+. ....
T Consensus 168 ~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~--~~~~~~~i~---~~~~---- 235 (281)
T 1mp8_A 168 DSTY---YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--NNDVIGRIE---NGER---- 235 (281)
T ss_dssp --------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHH---TTCC----
T ss_pred cccc---cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC--HHHHHHHHH---cCCC----
Confidence 4221 12233457889999999999999999999999999999997 999997532 222222221 1111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
...+...+..+.+++.. |++.||++||++.++++.|+++.+
T Consensus 236 ---~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 236 ---LPMPPNCPPTLYSLMTK------CWAYDPSRRPRFTELKAQLSTILE 276 (281)
T ss_dssp ---CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHH
Confidence 11223344455555555 999999999999999999998754
No 133
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=374.84 Aligned_cols=348 Identities=21% Similarity=0.251 Sum_probs=246.0
Q ss_pred cEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCc
Q 001238 294 VNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNN 373 (1117)
Q Consensus 294 ~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 373 (1117)
+.++.++++++ .+|..+. ++|+.|||++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777777 4565553 57888888888888777778888888888888888888777888888888888888888
Q ss_pred cccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCC
Q 001238 374 QITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPP 453 (1117)
Q Consensus 374 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 453 (1117)
++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 88866666677777888888888887777777777777777777777777766666777777777777777777766656
Q ss_pred CcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhccccc
Q 001238 454 EMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRL 533 (1117)
Q Consensus 454 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 533 (1117)
.|.++++|+.|++++|.+++..+..|..+++|+.|++++|.+.+.+|..+....+|++|+|++|+|++..+..|..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 67777777777777777776666667777777777777766665555555555567777777777665554556666666
Q ss_pred ccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCC
Q 001238 534 QFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSW 613 (1117)
Q Consensus 534 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~ 613 (1117)
+.|+|++|.|+++.+..|..+++|+.|+|++|++.+..|..|..+++|+.|+|++|+|+
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------------- 309 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT--------------------- 309 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS---------------------
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc---------------------
Confidence 66666666666665555555555555555555555555555555555555555555554
Q ss_pred CcccCCccccccCCCCccEEeccCccccCCcchhhhcccceEEEeecccccCCCCC
Q 001238 614 NQICGELPAELTGLNKLGILDLSHNELSGDLHFLAELQNLVVLNVSHNNFSGRVPD 669 (1117)
Q Consensus 614 N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~p~ 669 (1117)
+..+..|..+++|+.|+|++|++.|+++..+-+..+..+++.+|...+.-|.
T Consensus 310 ----~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 310 ----TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp ----CCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred ----eeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 4455567778889999999999999887655444455566666666655554
No 134
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.3e-37 Score=351.92 Aligned_cols=263 Identities=24% Similarity=0.382 Sum_probs=206.0
Q ss_pred CCCCCCeeeecCCeEEEEEEc-----CCCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecC--CceE
Q 001238 777 SLTAGNIIGQGRSGIVYKVTL-----PSGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANR--KTKL 848 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~--~~~~ 848 (1117)
.|++.+.||+|+||+||++.+ .+++.||||+++... ....+.+.+|++++++++||||+++++++.+. ...+
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 111 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ 111 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence 348899999999999998753 268899999998653 23356789999999999999999999999874 5678
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
+||||+++|+|.+++.... +++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 112 lv~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 112 LVMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EEECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccc
Confidence 9999999999999997643 89999999999999999999999 9999999999999999999999999999877
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCC---------CChhHHHHHHHH
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFP---------DGQHVIQWVRDH 999 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~---------~~~~~~~~~~~~ 999 (1117)
.... ..........+|+.|+|||++.+..++.++||||||+++|||++|+.||..... .+......+...
T Consensus 185 ~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (318)
T 3lxp_A 185 PEGH-EYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTEL 263 (318)
T ss_dssp CTTC-SEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred cccc-cccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHH
Confidence 5432 112233445688899999999999999999999999999999999999864210 001111112222
Q ss_pred HhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1000 LKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1000 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
...... ...+...+..+.++++. |++.||++||++.++++.|+++.+.
T Consensus 264 ~~~~~~------~~~~~~~~~~l~~li~~------~l~~dP~~Rps~~ell~~L~~l~~~ 311 (318)
T 3lxp_A 264 LERGER------LPRPDKCPAEVYHLMKN------CWETEASFRPTFENLIPILKTVHEK 311 (318)
T ss_dssp HHTTCC------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HhcccC------CCCCccccHHHHHHHHH------HcCCCcccCcCHHHHHHHHHHHHHh
Confidence 222211 11223344455555555 9999999999999999999988654
No 135
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-37 Score=352.72 Aligned_cols=262 Identities=26% Similarity=0.438 Sum_probs=201.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCC-----CcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPS-----GLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
.+|++.+.||+|+||+||+|.... +..||||+++... ......+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 467778999999999999997532 3469999997543 2334568899999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... +.+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 124 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 198 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLE 198 (333)
T ss_dssp EEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred EEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence 999999999999997642 3489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
...... .......+|+.|+|||++....++.++||||||+++|||++ |+.||... . ..+......... ..
T Consensus 199 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~--~---~~~~~~~~~~~~-~~-- 269 (333)
T 1mqb_A 199 DDPEAT-YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL--S---NHEVMKAINDGF-RL-- 269 (333)
T ss_dssp -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--C---HHHHHHHHHTTC-CC--
T ss_pred cccccc-cccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC--C---HHHHHHHHHCCC-cC--
Confidence 432111 12223456789999999998999999999999999999999 99999642 1 122222222211 11
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
..+...+..+.+++.. ||+.+|++||++.++++.|+++.....
T Consensus 270 ----~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~l~~~L~~~~~~~~ 312 (333)
T 1mqb_A 270 ----PTPMDCPSAIYQLMMQ------CWQQERARRPKFADIVSILDKLIRAPD 312 (333)
T ss_dssp ----CCCTTCBHHHHHHHHH------HTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred ----CCcccCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHhcch
Confidence 1122334455555554 999999999999999999998876543
No 136
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.8e-38 Score=364.69 Aligned_cols=274 Identities=22% Similarity=0.275 Sum_probs=210.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCC--ceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRK--TKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~--~~~lv 850 (1117)
.++|++.++||+|+||+||+|... +|+.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 357899999999999999999864 58999999997543 234567889999999999999999999988765 67999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE----cCCCcceeccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL----GERYESCLADFGLAR 926 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill----~~~~~~kl~DfGla~ 926 (1117)
|||+++|+|.+++........+++..++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999998765444589999999999999999999999 99999999999999 778889999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhcc--------CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHH
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYANM--------TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
..... .......||+.|+|||++.. ..++.++|||||||++|||++|+.||....... ...+.+..
T Consensus 165 ~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~-~~~~~~~~ 238 (396)
T 4eut_A 165 ELEDD-----EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR-RNKEVMYK 238 (396)
T ss_dssp ECCCG-----GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTT-TCHHHHHH
T ss_pred EccCC-----CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCccc-chHHHHHH
Confidence 76432 23345679999999998865 567889999999999999999999996532222 22333333
Q ss_pred HHhcCCCCc-ccc----------CcccCC--CCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 999 HLKSKKDPV-EVL----------DPKLQG--HPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 999 ~~~~~~~~~-~~~----------~~~l~~--~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.....+... ..+ ...++. .....+...+ ..++..|++.||++||+++++++.++++...
T Consensus 239 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l--~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 239 IITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLL--TPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHH--HHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred HhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhc--hHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 333321110 000 001111 1112222222 2355569999999999999999999887654
No 137
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=7.4e-38 Score=366.47 Aligned_cols=257 Identities=21% Similarity=0.257 Sum_probs=203.5
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
...++|++.++||+|+||+||+|+.+ +++.||||+++.. .....+.+.+|+.+++.++||||+++++++.+.+..|
T Consensus 71 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~ 150 (437)
T 4aw2_A 71 LHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNNLY 150 (437)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEE
T ss_pred CChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEE
Confidence 44678999999999999999999865 5789999999752 1223345899999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
+||||+++|+|.+++.... +.+++..++.++.|++.||+|||++ +||||||||+|||++.++.+||+|||+++..
T Consensus 151 lV~Ey~~gg~L~~~l~~~~--~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla~~~ 225 (437)
T 4aw2_A 151 LVMDYYVGGDLLTLLSKFE--DRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKL 225 (437)
T ss_dssp EEECCCTTCBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEecCCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhhhhc
Confidence 9999999999999998632 3489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhc-----cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYAN-----MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK 1003 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~ 1003 (1117)
.... .......+||+.|+|||++. ...++.++|||||||++|||++|+.||... ...+.........
T Consensus 226 ~~~~---~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~-----~~~~~~~~i~~~~ 297 (437)
T 4aw2_A 226 MEDG---TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE-----SLVETYGKIMNHK 297 (437)
T ss_dssp CTTS---CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTHH
T ss_pred ccCC---CcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC-----ChhHHHHhhhhcc
Confidence 5322 12334568999999999987 567899999999999999999999999642 2222222222111
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCC--CCCHHHHHH
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAED--RPTMKDVAA 1051 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~--RPs~~~v~~ 1051 (1117)
.. ...|......+....++++. |+..+|++ ||+++|+++
T Consensus 298 ~~---~~~p~~~~~~s~~~~dLi~~------lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 298 ER---FQFPTQVTDVSENAKDLIRR------LICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp HH---CCCCSSCCCSCHHHHHHHHT------TSSCGGGCTTTTTTHHHHT
T ss_pred cc---ccCCcccccCCHHHHHHHHH------HhcccccccCCCCHHHHhC
Confidence 00 00111112234455665554 77777877 999999977
No 138
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.1e-37 Score=349.19 Aligned_cols=266 Identities=26% Similarity=0.375 Sum_probs=205.1
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEEcCC----CcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeee-ecCC
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVTLPS----GLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWG-ANRK 845 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~-~~~~ 845 (1117)
+....+|++.+.||+|+||+||+|...+ +..||+|++.... ....+++.+|++++++++||||+++++++ ..++
T Consensus 21 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 100 (298)
T 3f66_A 21 GPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEG 100 (298)
T ss_dssp CGGGEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS
T ss_pred CccceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCC
Confidence 3445678889999999999999997532 3368999987543 33456789999999999999999999985 4556
Q ss_pred ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLA 925 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla 925 (1117)
..++||||+++|+|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||++
T Consensus 101 ~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a 175 (298)
T 3f66_A 101 SPLVVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLA 175 (298)
T ss_dssp CCEEEEECCTTCBHHHHHHCTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGG
T ss_pred ceEEEEeCCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccc
Confidence 7899999999999999997643 3488999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
+.................+|+.|+|||.+.+..++.++||||+|+++|||++ |.+||..... ...... ......
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~--~~~~~~---~~~~~~ 250 (298)
T 3f66_A 176 RDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT--FDITVY---LLQGRR 250 (298)
T ss_dssp CCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCT--TTHHHH---HHTTCC
T ss_pred ccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCH--HHHHHH---HhcCCC
Confidence 8765433222233445678899999999999999999999999999999999 5666654221 112111 111111
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
+..+...+..+.+++.. |++.+|++||++.++++.|+++....
T Consensus 251 -------~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~ell~~L~~~~~~~ 293 (298)
T 3f66_A 251 -------LLQPEYCPDPLYEVMLK------CWHPKAEMRPSFSELVSRISAIFSTF 293 (298)
T ss_dssp -------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred -------CCCCccCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 11122233445555554 99999999999999999999987643
No 139
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=355.23 Aligned_cols=253 Identities=23% Similarity=0.346 Sum_probs=196.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCC--CCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRH--RNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H--~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||+||+|...+++.||||++.... ....+.+.+|++++++++| |||+++++++.+.+..++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 45789999999999999999998889999999997543 2334678999999999986 9999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|| +.+++|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++ ++.+||+|||+++....
T Consensus 88 ~e-~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~ 159 (343)
T 3dbq_A 88 ME-CGNIDLNSWLKKK---KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 159 (343)
T ss_dssp EC-CCSEEHHHHHHHS---CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred Ee-CCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence 99 5688999999864 3489999999999999999999999 999999999999997 57899999999987654
Q ss_pred CCCCccccCCccccccccCChhhhcc-----------CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHH
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANM-----------TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDH 999 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~ 999 (1117)
... ........||+.|+|||++.. ..++.++|||||||++|||++|+.||..... ....+...
T Consensus 160 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~~~ 233 (343)
T 3dbq_A 160 DTT--SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN----QISKLHAI 233 (343)
T ss_dssp ------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS----HHHHHHHH
T ss_pred ccc--cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh----HHHHHHHH
Confidence 321 122335679999999999865 6788999999999999999999999964211 12222222
Q ss_pred HhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHH
Q 001238 1000 LKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALL 1053 (1117)
Q Consensus 1000 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L 1053 (1117)
..... ....+...+..+.+++.. |++.||++||++.++++.-
T Consensus 234 ~~~~~------~~~~~~~~~~~l~~li~~------~L~~dp~~Rpt~~e~l~hp 275 (343)
T 3dbq_A 234 IDPNH------EIEFPDIPEKDLQDVLKC------CLKRDPKQRISIPELLAHP 275 (343)
T ss_dssp HCTTS------CCCCCCCSCHHHHHHHHH------HTCSSTTTSCCHHHHHTSH
T ss_pred hcCCc------ccCCcccCCHHHHHHHHH------HcCCChhHCCCHHHHHhCc
Confidence 22111 112233334455555554 9999999999999998753
No 140
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=355.17 Aligned_cols=250 Identities=21% Similarity=0.291 Sum_probs=186.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.++|++.+.||+|+||+||+|+.. +++.||||+++... ..+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence 457889999999999999999865 58899999998543 345788999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC---CCcceeccccccccccC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE---RYESCLADFGLARLVED 930 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~---~~~~kl~DfGla~~~~~ 930 (1117)
+++|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++. ++.+||+|||+++....
T Consensus 130 ~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~ 203 (349)
T 2w4o_A 130 VTGGELFDRIVEK---GYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH 203 (349)
T ss_dssp CCSCBHHHHHTTC---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred CCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence 9999999998764 3489999999999999999999999 9999999999999975 88999999999987643
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
. .......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ................
T Consensus 204 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~~i~~~~~~~~--- 271 (349)
T 2w4o_A 204 Q-----VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERG----DQFMFRRILNCEYYFI--- 271 (349)
T ss_dssp --------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTC----HHHHHHHHHTTCCCCC---
T ss_pred c-----cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcc----cHHHHHHHHhCCCccC---
Confidence 2 122346799999999999998999999999999999999999999964221 1112222222221111
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
+......+..+.++++ .|++.||++||++.++++
T Consensus 272 -~~~~~~~~~~~~~li~------~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 272 -SPWWDEVSLNAKDLVR------KLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp -TTTTTTSCHHHHHHHH------TTSCSSGGGSCCHHHHHH
T ss_pred -CchhhhCCHHHHHHHH------HHccCChhhCcCHHHHhc
Confidence 1112233344555554 499999999999999877
No 141
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=358.61 Aligned_cols=246 Identities=22% Similarity=0.288 Sum_probs=195.9
Q ss_pred CCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecCCCCh
Q 001238 781 GNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMPNGTL 859 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gsL 859 (1117)
.+.||+|+||.||+|.. .+|+.||+|+++.......+.+.+|++++++++||||+++++++.+.+..++||||+++|+|
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L 173 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence 56899999999999975 56899999999876655667899999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE--cCCCcceeccccccccccCCCCCccc
Q 001238 860 GMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL--GERYESCLADFGLARLVEDDSGGSFS 937 (1117)
Q Consensus 860 ~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill--~~~~~~kl~DfGla~~~~~~~~~~~~ 937 (1117)
.+++.... ..+++..+..++.|+++||+|||++ +|+||||||+||++ ++++.+||+|||+++......
T Consensus 174 ~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~----- 243 (373)
T 2x4f_A 174 FDRIIDES--YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE----- 243 (373)
T ss_dssp HHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC-----
T ss_pred HHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc-----
Confidence 98886542 3489999999999999999999999 99999999999999 567899999999998765422
Q ss_pred cCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCC
Q 001238 938 ANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGH 1017 (1117)
Q Consensus 938 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1017 (1117)
......||+.|+|||++....++.++|||||||++|||++|+.||... .....+........... +.....
T Consensus 244 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~-----~~~~~~~~i~~~~~~~~----~~~~~~ 314 (373)
T 2x4f_A 244 KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD-----NDAETLNNILACRWDLE----DEEFQD 314 (373)
T ss_dssp BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTCCCSC----SGGGTT
T ss_pred ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhccCCCC----hhhhcc
Confidence 223457999999999999899999999999999999999999999642 22233333333222111 111123
Q ss_pred CchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1018 PDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1018 ~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.+..+.+++. .|++.||++||++.++++
T Consensus 315 ~~~~~~~li~------~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 315 ISEEAKEFIS------KLLIKEKSWRISASEALK 342 (373)
T ss_dssp SCHHHHHHHH------TTSCSSGGGSCCHHHHHH
T ss_pred CCHHHHHHHH------HHcCCChhhCCCHHHHhc
Confidence 3444555554 499999999999999987
No 142
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=9.1e-38 Score=355.87 Aligned_cols=263 Identities=27% Similarity=0.402 Sum_probs=209.2
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcCC------CcEEEEEEeecCC-ccchHHHHHHHHHHhcc-CCCCcceEEeeeecCC
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLPS------GLTVAVKRFRASD-KISTGAFSSEIATLSRI-RHRNIVRLLGWGANRK 845 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 845 (1117)
..++|++.+.||+|+||+||+|.... +..||+|++.... ....+.+.+|+++++++ +||||+++++++.+.+
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 35689999999999999999998532 3489999997653 23456789999999999 8999999999999999
Q ss_pred ceEEEEEecCCCChhhhhcCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGE-----------CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER 914 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~-----------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~ 914 (1117)
..++||||+++|+|.+++.... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~ 200 (333)
T 2i1m_A 124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNG 200 (333)
T ss_dssp SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGG
T ss_pred ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCC
Confidence 9999999999999999987532 123478999999999999999999999 99999999999999999
Q ss_pred CcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHH
Q 001238 915 YESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVI 993 (1117)
Q Consensus 915 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~ 993 (1117)
+.+||+|||+++....... ........+|+.|+|||++.+..++.++||||||+++|||++ |..||..... .....
T Consensus 201 ~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-~~~~~ 277 (333)
T 2i1m_A 201 HVAKIGDFGLARDIMNDSN--YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV-NSKFY 277 (333)
T ss_dssp GEEEBCCCGGGCCGGGCTT--SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS-SHHHH
T ss_pred CeEEECccccccccccccc--eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch-hHHHH
Confidence 9999999999987654322 123344567889999999999999999999999999999998 9999975322 12222
Q ss_pred HHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 994 QWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
..+. .... ...+...+..+.+++.. |++.||++||++.++++.|+++..
T Consensus 278 ~~~~----~~~~------~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~l~~~L~~~~~ 326 (333)
T 2i1m_A 278 KLVK----DGYQ------MAQPAFAPKNIYSIMQA------CWALEPTHRPTFQQICSFLQEQAQ 326 (333)
T ss_dssp HHHH----HTCC------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHh----cCCC------CCCCCCCCHHHHHHHHH------HhccChhhCcCHHHHHHHHHHHHH
Confidence 2222 1111 11122233455555554 999999999999999999988754
No 143
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=8e-38 Score=359.03 Aligned_cols=268 Identities=18% Similarity=0.266 Sum_probs=208.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCC---------CcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcce---------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPS---------GLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVR--------- 836 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~--------- 836 (1117)
.++|++.+.||+|+||+||+|.... ++.||||++... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3679999999999999999998653 789999998754 46889999999999999987
Q ss_pred ------EEeeeec-CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeE
Q 001238 837 ------LLGWGAN-RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNI 909 (1117)
Q Consensus 837 ------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Ni 909 (1117)
+++++.. .+..++||||+ +++|.+++.... .+.+++.+++.++.|+++||+|||++ +|+||||||+||
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NI 190 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSP-KHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENI 190 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCC-cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHE
Confidence 5666665 67789999999 999999998652 23499999999999999999999999 999999999999
Q ss_pred EEcCCC--cceeccccccccccCCCCC---ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 910 LLGERY--ESCLADFGLARLVEDDSGG---SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 910 ll~~~~--~~kl~DfGla~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
+++.++ .+||+|||+++........ .........||+.|+|||++.+..++.++||||||+++|||++|+.||..
T Consensus 191 l~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 270 (352)
T 2jii_A 191 FVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTN 270 (352)
T ss_dssp EEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred EEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence 999998 9999999999876543211 11122345899999999999999999999999999999999999999976
Q ss_pred CCCCChhHHHHHHHHHhcCCCCccccCccc-CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 985 SFPDGQHVIQWVRDHLKSKKDPVEVLDPKL-QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
.................... ....+.. ....+..+.++++. |++.||++||++.++++.|+++.+...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~l~~~L~~~~~~~~ 339 (352)
T 2jii_A 271 CLPNTEDIMKQKQKFVDKPG---PFVGPCGHWIRPSETLQKYLKV------VMALTYEEKPPYAMLRNNLEALLQDLR 339 (352)
T ss_dssp GTTCHHHHHHHHHHHHHSCC---CEECTTSCEECCCHHHHHHHHH------HHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHhccCChh---hhhhhccccCCCcHHHHHHHHH------HHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence 43333333333332222211 1111110 11234455666555 999999999999999999999876544
No 144
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-37 Score=344.53 Aligned_cols=261 Identities=25% Similarity=0.396 Sum_probs=207.5
Q ss_pred cCCCCCC-eeeecCCeEEEEEEcC---CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 776 RSLTAGN-IIGQGRSGIVYKVTLP---SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 776 ~~~~~~~-~lg~G~fg~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
++|.+.+ .||+|+||.||+|... +++.||||+++... ....+++.+|++++++++||||+++++++ ..+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 3455555 8999999999999743 57889999997643 33456789999999999999999999998 45678999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++++|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 88 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~ 162 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162 (287)
T ss_dssp EECCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred EEeCCCCCHHHHHHhCC--ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence 99999999999997542 3489999999999999999999999 999999999999999999999999999987754
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... .........+|+.|+|||++....++.++||||||+++|||++ |+.||... ........+ .....
T Consensus 163 ~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~~~~~~~~i----~~~~~---- 231 (287)
T 1u59_A 163 DDS-YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFI----EQGKR---- 231 (287)
T ss_dssp CSC-EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--CTHHHHHHH----HTTCC----
T ss_pred Ccc-eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC--CHHHHHHHH----hcCCc----
Confidence 321 1122334457899999999998899999999999999999998 99999653 222222222 11111
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
+..+...+..+.+++.. |++.+|++||++.++++.|+.+.....
T Consensus 232 --~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~l~~~l~~~~~~~~ 275 (287)
T 1u59_A 232 --MECPPECPPELYALMSD------CWIYKWEDRPDFLTVEQRMRACYYSLA 275 (287)
T ss_dssp --CCCCTTCCHHHHHHHHH------TTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCcCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 12233444556666555 999999999999999999998865443
No 145
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.3e-37 Score=347.08 Aligned_cols=264 Identities=20% Similarity=0.285 Sum_probs=200.5
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc---cchHHHHHHHHHHhccCCCCcceEEeeeecCCceE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK---ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
...++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++...+..+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~ 110 (309)
T 2h34_A 31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLY 110 (309)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEE
Confidence 34568999999999999999999854 689999999975432 22467889999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
+||||+++++|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 111 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~ 184 (309)
T 2h34_A 111 VDMRLINGVDLAAMLRRQ---GPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASAT 184 (309)
T ss_dssp EEEECCCCEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC----
T ss_pred EEEEecCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccc
Confidence 999999999999999764 3489999999999999999999999 9999999999999999999999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... ........||+.|+|||++.+..++.++||||||+++|||++|+.||... .. ..+............
T Consensus 185 ~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~-~~~~~~~~~~~~~~~ 255 (309)
T 2h34_A 185 TDEK---LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGD-----QL-SVMGAHINQAIPRPS 255 (309)
T ss_dssp ---------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSC-----HH-HHHHHHHHSCCCCGG
T ss_pred cccc---cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCc-----hH-HHHHHHhccCCCCcc
Confidence 5321 12233457999999999999899999999999999999999999999642 11 123333333222211
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-CHHHHHHHHHhhhcCCC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-TMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-s~~~v~~~L~~~~~~~~ 1061 (1117)
......+..+.+++.. |++.||++|| +++++++.|+++.....
T Consensus 256 ----~~~~~~~~~l~~li~~------~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 256 ----TVRPGIPVAFDAVIAR------GMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp ----GTSTTCCTHHHHHHHH------HTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred ----ccCCCCCHHHHHHHHH------hccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 1223344456666665 9999999999 99999999998765443
No 146
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=2.2e-37 Score=354.09 Aligned_cols=270 Identities=26% Similarity=0.362 Sum_probs=209.1
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhc--cCCCCcceEEeeeecCC----c
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSR--IRHRNIVRLLGWGANRK----T 846 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~H~niv~l~~~~~~~~----~ 846 (1117)
...++|++.+.||+|+||+||+|+. +|+.||||++... ..+.+.+|+++++. ++||||+++++++...+ .
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~ 114 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 114 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence 3456899999999999999999988 5899999998643 34567889998887 78999999999998776 7
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHh--------ccCCCceeeeccccCeEEEcCCCcce
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLH--------HDCVPAILHRDVKSHNILLGERYESC 918 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivHrDlkp~Nill~~~~~~k 918 (1117)
.++||||+++|+|.+++... .+++.+++.++.|++.||+||| +. +|+||||||+||+++.++.+|
T Consensus 115 ~~lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~k 187 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCC 187 (342)
T ss_dssp EEEEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEE
T ss_pred eEEEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEE
Confidence 89999999999999999764 3899999999999999999999 77 999999999999999999999
Q ss_pred eccccccccccCCCCCccccCCccccccccCChhhhccC------CCCcCCCeeehhhhHHHHHhC----------CCCC
Q 001238 919 LADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT------KISEKSDVYSYGVVLLEIITG----------KKPV 982 (1117)
Q Consensus 919 l~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~SlG~vl~ell~g----------~~P~ 982 (1117)
|+|||+++.................||+.|+|||++... .++.++||||||+++|||++| +.||
T Consensus 188 L~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~ 267 (342)
T 1b6c_B 188 IADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPY 267 (342)
T ss_dssp ECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCc
Confidence 999999987765332211233456799999999998765 344789999999999999999 7888
Q ss_pred CCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 983 DASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
............+......... .+.++.... ..........++..||+.||++||++.+|++.|+++.++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 268 YDLVPSDPSVEEMRKVVCEQKL------RPNIPNRWQ-SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp TTTSCSSCCHHHHHHHHTTSCC------CCCCCGGGG-TSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred cccCcCcccHHHHHHHHHHHHh------CCCCccccc-chhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 6654443344444333322211 111111110 0011111223555699999999999999999999987654
No 147
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2.2e-37 Score=355.86 Aligned_cols=253 Identities=22% Similarity=0.246 Sum_probs=194.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.++|++.+.||+|+||+||+++.. +++.||||++..... ..+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 457999999999999999999864 789999999976433 346789999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc--ceeccccccccccCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE--SCLADFGLARLVEDD 931 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~--~kl~DfGla~~~~~~ 931 (1117)
+++|+|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++. +||+|||+++.....
T Consensus 98 ~~~~~L~~~l~~~---~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~ 171 (361)
T 3uc3_A 98 ASGGELYERICNA---GRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH 171 (361)
T ss_dssp CCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC------
T ss_pred CCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCcccccccc
Confidence 9999999998653 3489999999999999999999999 9999999999999987765 999999999754322
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcC-CCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEK-SDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.......||+.|+|||++.+..++.+ +||||+||++|||++|+.||...... ......+............
T Consensus 172 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~-- 243 (361)
T 3uc3_A 172 -----SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEP-RDYRKTIQRILSVKYSIPD-- 243 (361)
T ss_dssp --------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----C-CCHHHHHHHHHTTCCCCCT--
T ss_pred -----CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccH-HHHHHHHHHHhcCCCCCCC--
Confidence 12334579999999999988887655 89999999999999999999753222 2233333333332211111
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
....+..+.++++. |++.||++|||+.++++.
T Consensus 244 ----~~~~s~~~~~li~~------~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 244 ----DIRISPECCHLISR------IFVADPATRISIPEIKTH 275 (361)
T ss_dssp ----TSCCCHHHHHHHHH------HSCSCTTTSCCHHHHHTS
T ss_pred ----cCCCCHHHHHHHHH------HccCChhHCcCHHHHHhC
Confidence 11233455555555 999999999999999874
No 148
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=3.2e-37 Score=365.45 Aligned_cols=264 Identities=22% Similarity=0.289 Sum_probs=206.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCC-CCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRH-RNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H-~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.++||+|+||.||+|.+ .+++.||||++..... ..++.+|+++++.++| ++++.+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 35799999999999999999985 5789999999875433 3468899999999986 666677777788888999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---cCCCcceecccccccccc
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL---GERYESCLADFGLARLVE 929 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill---~~~~~~kl~DfGla~~~~ 929 (1117)
|+ +++|.+++.... +.+++.+++.++.||+.||+|||++ +||||||||+|||+ +.++.+||+|||+++...
T Consensus 84 ~~-g~sL~~ll~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~ 157 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCS--RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR 157 (483)
T ss_dssp CC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred CC-CCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence 99 999999997532 3489999999999999999999999 99999999999999 688999999999998776
Q ss_pred CCCCCc---cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC-CC
Q 001238 930 DDSGGS---FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK-KD 1005 (1117)
Q Consensus 930 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~-~~ 1005 (1117)
...... ........||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..+.+....... ..
T Consensus 158 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~--~~~~~~~i~~~~~~~ 235 (483)
T 3sv0_A 158 DTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT--KKQKYEKISEKKVAT 235 (483)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS--HHHHHHHHHHHHHHS
T ss_pred CCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchh--HHHHHHHHhhccccc
Confidence 543221 223346789999999999999999999999999999999999999997643321 111111111110 00
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
.. +.+....+..+.+++.. ||+.+|++||++.+|+++|+++..
T Consensus 236 ~~----~~l~~~~p~~l~~li~~------cl~~dP~~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 236 SI----EALCRGYPTEFASYFHY------CRSLRFDDKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp CH----HHHHTTSCHHHHHHHHH------HHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred cH----HHHhcCCcHHHHHHHHH------HhcCChhhCcCHHHHHHHHHHHHH
Confidence 11 11122333455555554 999999999999999999988744
No 149
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=2.4e-37 Score=365.88 Aligned_cols=246 Identities=24% Similarity=0.367 Sum_probs=203.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|.+.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 57888999999999999999864 79999999997532 223467899999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 96 E~~~gg~L~~~l~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~ 169 (476)
T 2y94_A 96 EYVSGGELFDYICKN---GRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169 (476)
T ss_dssp ECCSSEEHHHHTTSS---SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred eCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence 999999999999764 3489999999999999999999999 9999999999999999999999999999876532
Q ss_pred CCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
. .....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||+.. ..............
T Consensus 170 ~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~-----~~~~~~~~i~~~~~------ 233 (476)
T 2y94_A 170 E-----FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD-----HVPTLFKKICDGIF------ 233 (476)
T ss_dssp C-----CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS-----SSHHHHHHHHTTCC------
T ss_pred c-----cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHhcCCc------
Confidence 1 2234579999999999988765 68999999999999999999999742 12222333322221
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..+...+..+.++++. |++.||++||++.++++
T Consensus 234 --~~p~~~s~~~~~Li~~------~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 234 --YTPQYLNPSVISLLKH------MLQVDPMKRATIKDIRE 266 (476)
T ss_dssp --CCCTTCCHHHHHHHHH------HTCSSTTTSCCHHHHHT
T ss_pred --CCCccCCHHHHHHHHH------HcCCCchhCcCHHHHHh
Confidence 1122334455565555 99999999999999987
No 150
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=357.39 Aligned_cols=267 Identities=18% Similarity=0.263 Sum_probs=200.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC----CCcEEEEEEeecCCcc-----------chHHHHHHHHHHhccCCCCcceEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP----SGLTVAVKRFRASDKI-----------STGAFSSEIATLSRIRHRNIVRLLG 839 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~H~niv~l~~ 839 (1117)
.++|++.+.||+|+||+||+|... ++..||||++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 357999999999999999999865 5788999998765321 1224667888999999999999999
Q ss_pred eeec----CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC
Q 001238 840 WGAN----RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY 915 (1117)
Q Consensus 840 ~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~ 915 (1117)
++.. ....++||||+ +++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~ 188 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKN 188 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSS
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCC
Confidence 9887 67889999999 999999998653 489999999999999999999999 999999999999999887
Q ss_pred --cceeccccccccccCCCCC---ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCCh
Q 001238 916 --ESCLADFGLARLVEDDSGG---SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQ 990 (1117)
Q Consensus 916 --~~kl~DfGla~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~ 990 (1117)
.+||+|||+++........ .........||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 189 ~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~ 268 (345)
T 2v62_A 189 PDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPV 268 (345)
T ss_dssp TTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHH
T ss_pred CCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccH
Confidence 9999999999876533211 11122455799999999999999999999999999999999999999965332222
Q ss_pred hHHHHHHHHHhcCCCCccccCccc-CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhh
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKL-QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIR 1057 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~ 1057 (1117)
.... ........ ....+.... ....+..+.+++.. ||+.||++||++.+|++.|+...
T Consensus 269 ~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 269 AVQT-AKTNLLDE--LPQSVLKWAPSGSSCCEIAQFLVC------AHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHH-HHHHHHHT--TTHHHHHHSCTTSCCHHHHHHHHH------HHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHH-HHHhhccc--ccHHHHhhccccccHHHHHHHHHH------HhhcCcccCCCHHHHHHHHhccC
Confidence 2222 22222111 111111111 11334456666655 99999999999999999998754
No 151
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9.7e-38 Score=359.76 Aligned_cols=263 Identities=25% Similarity=0.365 Sum_probs=195.3
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC--C--CcEEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeec-CCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP--S--GLTVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGAN-RKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~--~--~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~-~~~~~l 849 (1117)
..|++.+.||+|+||+||+|.+. + +..||||+++.. .....++|.+|++++++++||||+++++++.. ++..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 35677889999999999999753 2 246899998653 33345679999999999999999999998654 567899
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||+++...
T Consensus 169 v~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~ 243 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 243 (373)
T ss_dssp EEECCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEECCCCCCHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccc
Confidence 999999999999997643 3478999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
..............+|+.|+|||++.+..++.++||||||+++|||++ |.+||..... ......+. ... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~--~~~~~~~~---~~~-~~-- 315 (373)
T 3c1x_A 244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT--FDITVYLL---QGR-RL-- 315 (373)
T ss_dssp --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS--SCHHHHHH---TTC-CC--
T ss_pred ccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH--HHHHHHHH---cCC-CC--
Confidence 432222223344567889999999999999999999999999999999 7778865322 22222221 111 11
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
..+...+..+.+++.. ||+.+|++||++.++++.|+++.....
T Consensus 316 ----~~p~~~~~~l~~li~~------cl~~dp~~RPs~~ell~~L~~i~~~~~ 358 (373)
T 3c1x_A 316 ----LQPEYCPDPLYEVMLK------CWHPKAEMRPSFSELVSRISAIFSTFI 358 (373)
T ss_dssp ----CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred ----CCCCCCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence 1122334455555554 999999999999999999999876544
No 152
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=2.8e-37 Score=342.00 Aligned_cols=252 Identities=20% Similarity=0.220 Sum_probs=204.1
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
+..++|++.+.||+|+||+||+|... ++..||+|++........+++.+|++++++++||||+++++++.+.+..++||
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (277)
T 3f3z_A 6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM 85 (277)
T ss_dssp CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence 44567999999999999999999754 57899999998765666788999999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---cCCCcceeccccccccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL---GERYESCLADFGLARLV 928 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill---~~~~~~kl~DfGla~~~ 928 (1117)
||+++++|.+++... +.+++.++..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++..
T Consensus 86 e~~~~~~L~~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~ 159 (277)
T 3f3z_A 86 ELCTGGELFERVVHK---RVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF 159 (277)
T ss_dssp ECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred eccCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence 999999999988764 3489999999999999999999999 99999999999999 78899999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... ......||+.|+|||++.+ .++.++||||+|+++|||++|+.||... ...+..............
T Consensus 160 ~~~~-----~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~ 228 (277)
T 3f3z_A 160 KPGK-----MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAP-----TDSEVMLKIREGTFTFPE 228 (277)
T ss_dssp CTTS-----CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCCCCH
T ss_pred cCcc-----chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhCCCCCCc
Confidence 5322 2234579999999999875 4899999999999999999999999642 112222222222211111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. .....+..+.++++. |++.||++||++.++++
T Consensus 229 ~----~~~~~~~~~~~li~~------~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 229 K----DWLNVSPQAESLIRR------LLTKSPKQRITSLQALE 261 (277)
T ss_dssp H----HHTTSCHHHHHHHHH------HTCSSTTTSCCHHHHTT
T ss_pred h----hhhcCCHHHHHHHHH------HccCChhhCcCHHHHhc
Confidence 1 011223345555554 99999999999999986
No 153
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.7e-37 Score=365.23 Aligned_cols=347 Identities=27% Similarity=0.399 Sum_probs=217.3
Q ss_pred CCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceE
Q 001238 265 DCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQEL 344 (1117)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 344 (1117)
.+++|+.|++.+|.++ .+|. +..+++|++|+|++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3567888888888887 3553 7778888888888888875433 7788888888888888885544 7788888888
Q ss_pred ecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeeccccccc
Q 001238 345 QLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLT 424 (1117)
Q Consensus 345 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 424 (1117)
++++|.+++..+ +.++++|++|++++|.+++. + .+..+++|+.|+++ |.+.+..+ +.++++|+.|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCC
Confidence 888888875433 77788888888888887743 2 36667777777764 44443322 666666667777666666
Q ss_pred CCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccc
Q 001238 425 GPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEIT 504 (1117)
Q Consensus 425 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 504 (1117)
+ + ..+..+++|++|++++|++.+..| ++.+++|++|++++|++++. ..+..+++|+.|++++|++++..+ +.
T Consensus 191 ~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 D-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred C-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 3 2 235556666666666666655433 45555555555555555533 235555555555555555554332 55
Q ss_pred cCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEE
Q 001238 505 GCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLL 584 (1117)
Q Consensus 505 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 584 (1117)
.+++|++|++++|.+++..+ +..+++|+.|++++|+++++.+ +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--------------------------~~~l~~L~~L 314 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--------------------------ISNLKNLTYL 314 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--------------------------GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--------------------------hcCCCCCCEE
Confidence 55555555555555554332 4444444444444444444332 4445555555
Q ss_pred eccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcchhhhcccceEEEeeccccc
Q 001238 585 DLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHFLAELQNLVVLNVSHNNFS 664 (1117)
Q Consensus 585 ~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~ 664 (1117)
+|++|++++..| +..++++ +.|++++|++++. ..+..+++|+.|++++|++++.+| +..+++|+.|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKL-QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccC-CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 555555554333 3444444 4555555555543 356677788888888888877666 777888888888888887
Q ss_pred CC
Q 001238 665 GR 666 (1117)
Q Consensus 665 ~~ 666 (1117)
+.
T Consensus 389 ~~ 390 (466)
T 1o6v_A 389 NA 390 (466)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 154
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=1.7e-37 Score=349.74 Aligned_cols=269 Identities=21% Similarity=0.343 Sum_probs=200.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||||+++... ....+++.+|++++++++||||+++++++...+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 35789999999999999999975 578999999997532 33345788999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 851 YDYMPNGTLGMLLHDGE-CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
|||+++++|.+++.... ....+++..++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 99999999999986521 123489999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... .......||+.|+|||++....++.++||||||+++|||++|+.||..... ............. .+
T Consensus 188 ~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~-~~--- 256 (310)
T 2wqm_A 188 SKT----TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---NLYSLCKKIEQCD-YP--- 256 (310)
T ss_dssp ---------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C---CHHHHHHHHHTTC-SC---
T ss_pred CCC----ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch---hHHHHHHHhhccc-CC---
Confidence 321 122345789999999999999999999999999999999999999965322 2222222222211 11
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCCCCCC
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPASGSE 1065 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~~~~~ 1065 (1117)
+......+..+.+++.. |++.||++||++.++++.++++....++..+
T Consensus 257 --~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~il~~l~~l~~~~~~~~~ 304 (310)
T 2wqm_A 257 --PLPSDHYSEELRQLVNM------CINPDPEKRPDVTYVYDVAKRMHACTASSLE 304 (310)
T ss_dssp --CCCTTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHHHC----
T ss_pred --CCcccccCHHHHHHHHH------HcCCChhhCCCHHHHHHHHHHHHHhhhhhhh
Confidence 11112334455665555 9999999999999999999999876554433
No 155
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=345.41 Aligned_cols=260 Identities=25% Similarity=0.275 Sum_probs=196.6
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC-----ccchHHHHHHHHHHhccC---CCCcceEEeeeecC
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD-----KISTGAFSSEIATLSRIR---HRNIVRLLGWGANR 844 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~ 844 (1117)
..++|++.+.||+|+||+||+|.. .+|+.||||++.... ......+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 356899999999999999999985 568999999987432 122346778888887775 99999999998776
Q ss_pred C-----ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCccee
Q 001238 845 K-----TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCL 919 (1117)
Q Consensus 845 ~-----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl 919 (1117)
. ..++||||++ |+|.+++..... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP-PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence 5 4789999997 599999887543 3389999999999999999999999 9999999999999999999999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDH 999 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~ 999 (1117)
+|||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||... ........+...
T Consensus 162 ~Dfg~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~ 234 (308)
T 3g33_A 162 ADFGLARIYSYQM-----ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN--SEADQLGKIFDL 234 (308)
T ss_dssp CSCSCTTTSTTCC-----CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS--SHHHHHHHHHHH
T ss_pred eeCccccccCCCc-----ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHH
Confidence 9999998764321 234567999999999999999999999999999999999999999652 111222222222
Q ss_pred HhcCCCCc--c-------ccCc-------ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1000 LKSKKDPV--E-------VLDP-------KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1000 ~~~~~~~~--~-------~~~~-------~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
........ . ...+ ......+..+.+++. .|++.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~------~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 235 IGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLL------EMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp HCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHH------HHTCSSTTTSCCHHHHHT
T ss_pred hCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHH------HHhcCCCccCCCHHHHhc
Confidence 11110000 0 0000 011122333444444 499999999999999876
No 156
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.3e-37 Score=357.84 Aligned_cols=246 Identities=24% Similarity=0.292 Sum_probs=192.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHH-HhccCCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIAT-LSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.+.||+|+||+||+|+.+ +++.||||+++... ......+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 357889999999999999999864 58899999997543 2233456667776 577899999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++... +.+++..++.++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++...
T Consensus 117 v~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~ 190 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRE---RCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENI 190 (373)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGB
T ss_pred EEeCCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccc
Confidence 99999999999998764 3488999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||... ...+..........
T Consensus 191 ~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----~~~~~~~~i~~~~~----- 256 (373)
T 2r5t_A 191 EHN----STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----NTAEMYDNILNKPL----- 256 (373)
T ss_dssp CCC----CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----BHHHHHHHHHHSCC-----
T ss_pred cCC----CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhccc-----
Confidence 321 2334568999999999999999999999999999999999999999642 22333333333221
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDV 1049 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v 1049 (1117)
.++...+..+.++++. |++.||++||++.+.
T Consensus 257 ---~~~~~~~~~~~~li~~------lL~~dp~~R~~~~~~ 287 (373)
T 2r5t_A 257 ---QLKPNITNSARHLLEG------LLQKDRTKRLGAKDD 287 (373)
T ss_dssp ---CCCSSSCHHHHHHHHH------HTCSSGGGSTTTTTT
T ss_pred ---CCCCCCCHHHHHHHHH------HcccCHHhCCCCCCC
Confidence 1223344456666655 999999999997543
No 157
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=4e-37 Score=340.39 Aligned_cols=246 Identities=20% Similarity=0.296 Sum_probs=179.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 35799999999999999999985 568999999987542 23356789999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+ ++++.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||++++++.+||+|||+++....
T Consensus 92 ~e~~-~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 164 (275)
T 2eue_A 92 IEYA-GNELFDYIVQR---DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp EECC-CEEHHHHHHTS---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC-----
T ss_pred ehhc-CCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccC
Confidence 9999 67787777654 2389999999999999999999999 999999999999999999999999999986643
Q ss_pred CCCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
.. ......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||... ..............
T Consensus 165 ~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~~----- 229 (275)
T 2eue_A 165 GN-----FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVLFKNISNGVY----- 229 (275)
T ss_dssp ---------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCC-----
T ss_pred cc-----cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCC-----
Confidence 21 2234569999999999987765 68999999999999999999999642 22222222222221
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.++...+..+.++++. |++.||++||++.|+++
T Consensus 230 ---~~~~~~~~~~~~li~~------~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 230 ---TLPKFLSPGAAGLIKR------MLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ---CCCTTSCHHHHHHHHH------HSCSSGGGSCCHHHHTT
T ss_pred ---CCCccCCHHHHHHHHH------HhhcCHhHCCCHHHHhh
Confidence 1223344455555555 99999999999999976
No 158
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2.1e-37 Score=345.16 Aligned_cols=259 Identities=28% Similarity=0.428 Sum_probs=211.8
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.++|++.+.||+|+||+||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~ 90 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 90 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEc
Confidence 457888999999999999999865 48899999997543 3457899999999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
+++++|.+++..... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 91 ~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 165 (288)
T 3kfa_A 91 MTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT- 165 (288)
T ss_dssp CTTEEHHHHHHHCCT-TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-
T ss_pred CCCCcHHHHHHhccc-CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCc-
Confidence 999999999976432 3489999999999999999999999 99999999999999999999999999998765322
Q ss_pred CccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
........+|+.|+|||++....++.++||||+|+++|||++ |+.||... ........+. .... .
T Consensus 166 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~--~~~~~~~~~~----~~~~------~ 231 (288)
T 3kfa_A 166 --YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYELLE----KDYR------M 231 (288)
T ss_dssp --SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--CGGGHHHHHH----TTCC------C
T ss_pred --cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--CHHHHHHHHh----ccCC------C
Confidence 223344567889999999999999999999999999999999 99999653 2222222222 1111 1
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
..+...+..+.++++. |++.||++||++.++++.|+.+..+
T Consensus 232 ~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 232 ERPEGCPEKVYELMRA------CWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH------HhCCChhhCcCHHHHHHHHHHHHHh
Confidence 1223334455565555 9999999999999999999887653
No 159
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=349.59 Aligned_cols=266 Identities=26% Similarity=0.401 Sum_probs=209.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-----CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCC--ce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-----PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRK--TK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~--~~ 847 (1117)
.++|++.+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 35688999999999999999973 468999999998766656678999999999999999999999886654 78
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||+++++|.+++.... ..+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~ 194 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHK--ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKV 194 (326)
T ss_dssp EEEECCCTTCBHHHHHHHST--TSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEECCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhh
Confidence 99999999999999997653 3489999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCC----------CCChhHHHHHH
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASF----------PDGQHVIQWVR 997 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~----------~~~~~~~~~~~ 997 (1117)
...... .........++..|+|||.+.+..++.++||||||+++|||++|+.||.... .........+.
T Consensus 195 ~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 195 LPQDKE-YYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp CCSSCS-EEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred cccccc-ccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHH
Confidence 654321 1122334567888999999998899999999999999999999999985320 01111111222
Q ss_pred HHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 998 DHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 998 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
..+..... ...+...+..+.++++. ||+.||++||++.++++.|+++++
T Consensus 274 ~~~~~~~~------~~~~~~~~~~l~~li~~------cl~~dP~~Rps~~el~~~L~~l~~ 322 (326)
T 2w1i_A 274 ELLKNNGR------LPRPDGCPDEIYMIMTE------CWNNNVNQRPSFRDLALRVDQIRD 322 (326)
T ss_dssp HHHHTTCC------CCCCTTCCHHHHHHHHH------HSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHhhcCCC------CCCCCcccHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHH
Confidence 22222211 11123334455555555 999999999999999999998864
No 160
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=1.3e-37 Score=368.85 Aligned_cols=248 Identities=20% Similarity=0.270 Sum_probs=194.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||||+++.. .......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 35789999999999999999974 56899999999753 333445678899999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-cCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHH-DCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
|||+++|+|.+++... +.+++..+..++.|+++||+|||+ + +|+||||||+|||++.++.+||+|||+++...
T Consensus 227 ~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 300 (446)
T 4ejn_A 227 MEYANGGELFFHLSRE---RVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 300 (446)
T ss_dssp ECCCSSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred EeeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence 9999999999998764 348999999999999999999998 7 99999999999999999999999999998643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||... ..............
T Consensus 301 ~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----~~~~~~~~i~~~~~----- 366 (446)
T 4ejn_A 301 KDG----ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----DHEKLFELILMEEI----- 366 (446)
T ss_dssp C---------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC-----
T ss_pred CCC----cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC-----CHHHHHHHHHhCCC-----
Confidence 321 2334568999999999999999999999999999999999999999642 22222333332221
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-----CHHHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-----TMKDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-----s~~~v~~ 1051 (1117)
.++...+..+.+++.. |++.||++|| ++.++++
T Consensus 367 ---~~p~~~~~~~~~li~~------~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 367 ---RFPRTLGPEAKSLLSG------LLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp ---CCCTTSCHHHHHHHHH------HTCSSTTTSTTCSTTTHHHHHT
T ss_pred ---CCCccCCHHHHHHHHH------HcccCHHHhCCCCCCCHHHHHh
Confidence 1223344456666655 9999999999 9999976
No 161
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-36 Score=363.55 Aligned_cols=348 Identities=26% Similarity=0.394 Sum_probs=291.9
Q ss_pred ccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCE
Q 001238 240 GLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSI 319 (1117)
Q Consensus 240 ~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 319 (1117)
..+++++.|++.++.+.. +| .+..+++|++|+|++|.+++.. . +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 457899999999998865 44 4889999999999999999654 4 9999999999999999996654 999999999
Q ss_pred EEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccc
Q 001238 320 IDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRL 399 (1117)
Q Consensus 320 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 399 (1117)
|++++|.+++. +. +.++++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+.. .+.++++|+.|++++|++
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 99999999965 43 8999999999999999985 34 48999999999997 5666443 389999999999999999
Q ss_pred cccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCc
Q 001238 400 EGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEI 479 (1117)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 479 (1117)
++. ..+..+++|++|++++|.+++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 854 348899999999999999997555 77899999999999999865 478899999999999999997755 8
Q ss_pred CCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccE
Q 001238 480 GNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTK 559 (1117)
Q Consensus 480 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 559 (1117)
..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+++++.+ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 999999999999999997544 8899999999999999998655 7888999999999998887755 677778888
Q ss_pred EeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCcc
Q 001238 560 LVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNE 639 (1117)
Q Consensus 560 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~ 639 (1117)
|++++|++++. ..+..+++|+.|++++|++++.+| +..+++|+.|++++|+
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---------------------------LANLTRITQLGLNDQA 386 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---------------------------GTTCTTCCEEECCCEE
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---------------------------hhcCCCCCEEeccCCc
Confidence 88888877754 356677777777777777764443 4455666677777777
Q ss_pred ccCC
Q 001238 640 LSGD 643 (1117)
Q Consensus 640 l~~~ 643 (1117)
+++.
T Consensus 387 ~~~~ 390 (466)
T 1o6v_A 387 WTNA 390 (466)
T ss_dssp EECC
T ss_pred ccCC
Confidence 6653
No 162
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=2.6e-37 Score=349.28 Aligned_cols=264 Identities=25% Similarity=0.381 Sum_probs=209.4
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc------CCCcEEEEEEeecCCc-cchHHHHHHHHHHhcc-CCCCcceEEeeeecCC
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL------PSGLTVAVKRFRASDK-ISTGAFSSEIATLSRI-RHRNIVRLLGWGANRK 845 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~ 845 (1117)
..++|++.+.||+|+||+||+|++ .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++...+
T Consensus 25 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 104 (316)
T 2xir_A 25 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG 104 (316)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred chhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCC
Confidence 456899999999999999999973 3578999999976432 2345788999999999 7999999999987755
Q ss_pred -ceEEEEEecCCCChhhhhcCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE
Q 001238 846 -TKLLFYDYMPNGTLGMLLHDGEC-------------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL 911 (1117)
Q Consensus 846 -~~~lv~e~~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill 911 (1117)
..++||||+++|+|.+++..... ...+++..+..++.|+++||+|||++ +|+||||||+||++
T Consensus 105 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~ 181 (316)
T 2xir_A 105 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILL 181 (316)
T ss_dssp SCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred CceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEE
Confidence 48999999999999999987532 12378999999999999999999999 99999999999999
Q ss_pred cCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCCh
Q 001238 912 GERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQ 990 (1117)
Q Consensus 912 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~ 990 (1117)
+.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||||+++|||++ |+.||..... ..
T Consensus 182 ~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-~~ 258 (316)
T 2xir_A 182 SEKNVVKICDFGLARDIYKDPD--YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-DE 258 (316)
T ss_dssp CGGGCEEECCCGGGSCTTTCTT--SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC-SH
T ss_pred CCCCCEEECCCccccccccCcc--ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccch-hH
Confidence 9999999999999987654321 123345578899999999999999999999999999999998 9999975322 22
Q ss_pred hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.....+ ..... ...+...+..+.+++.. |++.||++||++.++++.|+.+.+.
T Consensus 259 ~~~~~~----~~~~~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~~L~~~~~~ 311 (316)
T 2xir_A 259 EFCRRL----KEGTR------MRAPDYTTPEMYQTMLD------CWHGEPSQRPTFSELVEHLGNLLQA 311 (316)
T ss_dssp HHHHHH----HHTCC------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHh----ccCcc------CCCCCCCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHhh
Confidence 222222 11111 11222334445555544 9999999999999999999988653
No 163
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=3.9e-37 Score=341.27 Aligned_cols=247 Identities=24% Similarity=0.391 Sum_probs=200.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||+||+|.. .+++.||+|++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 45788999999999999999975 457899999986532 22346789999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++|+|.+++... +.+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++.....
T Consensus 88 ~e~~~~~~l~~~l~~~---~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp ECCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EecCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 9999999999998764 3389999999999999999999999 999999999999999999999999999865433
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
. ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||... .............
T Consensus 162 ~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~------- 223 (279)
T 3fdn_A 162 S------RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-----TYQETYKRISRVE------- 223 (279)
T ss_dssp ------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTC-------
T ss_pred c------cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC-----cHHHHHHHHHhCC-------
Confidence 2 223457899999999999999999999999999999999999999642 2222222222221
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
...+...+..+.++++. |++.||++||++.++++.
T Consensus 224 -~~~~~~~~~~~~~li~~------~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 224 -FTFPDFVTEGARDLISR------LLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp -CCCCTTSCHHHHHHHHH------HCCSSGGGSCCHHHHHHC
T ss_pred -CCCCCcCCHHHHHHHHH------HhccChhhCCCHHHHhhC
Confidence 12233344456666655 999999999999999984
No 164
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=351.55 Aligned_cols=255 Identities=24% Similarity=0.338 Sum_probs=190.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc-chHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEe
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI-STGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
++|++.+.||+|+||+||+|... +++.||||+++..... ....+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 46888999999999999999864 7899999998754321 222456799999999999999999999999999999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
++ |+|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~- 154 (324)
T 3mtl_A 82 LD-KDLKQYLDDCG--NIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPT- 154 (324)
T ss_dssp CS-EEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred cc-cCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCc-
Confidence 97 58888887643 3489999999999999999999999 99999999999999999999999999998654321
Q ss_pred CccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||... ........+...... +.....+
T Consensus 155 ---~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~--~~~~~~~~i~~~~~~---~~~~~~~ 226 (324)
T 3mtl_A 155 ---KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS--TVEEQLHFIFRILGT---PTEETWP 226 (324)
T ss_dssp -----------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCC---CCTTTST
T ss_pred ---cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhCC---CChHhch
Confidence 22334578999999999876 67899999999999999999999999652 112222222222211 1111111
Q ss_pred cc----------------------CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1013 KL----------------------QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1013 ~l----------------------~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.. ....+....+++ ..|++.||++|||++|+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li------~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 227 GILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLL------TKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp TGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHH------HHHSCSSGGGSCCHHHHTT
T ss_pred hhhcchhhcccccccccchhhhhhcCCCCHHHHHHH------HHHcCcCcccCCCHHHHhc
Confidence 10 011223334444 4599999999999999987
No 165
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=352.47 Aligned_cols=259 Identities=22% Similarity=0.348 Sum_probs=198.4
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCc----EEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGL----TVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~----~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|++.+.||+|+||+||+|.+. +++ +||+|.+... .....+++.+|++++++++||||+++++++.... .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~ 93 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence 57889999999999999999853 444 3577777543 3345678999999999999999999999988754 789
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... +.+++..++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 94 v~~~~~~g~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~ 168 (327)
T 3lzb_A 94 ITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EECCCSSCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred EEEecCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence 999999999999997643 3489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... ........+|+.|+|||++.+..++.++||||||+++|||++ |+.||.... .......+. ....
T Consensus 169 ~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~--~~~~~~~~~----~~~~--- 237 (327)
T 3lzb_A 169 AEEK--EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILE----KGER--- 237 (327)
T ss_dssp -------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHH----TTCC---
T ss_pred Cccc--cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHH----cCCC---
Confidence 4321 122234457889999999999999999999999999999999 999997532 222222222 1111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
...+...+..+.++++. ||+.||++||++.++++.|+++...+
T Consensus 238 ---~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~~L~~~~~~~ 280 (327)
T 3lzb_A 238 ---LPQPPICTIDVYMIMRK------CWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp ---CCCCTTBCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred ---CCCCccCCHHHHHHHHH------HcCCChhHCcCHHHHHHHHHHHHhCc
Confidence 11122233445555554 99999999999999999999987543
No 166
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=2.9e-37 Score=369.36 Aligned_cols=253 Identities=20% Similarity=0.261 Sum_probs=205.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||||++... .......+.+|++++++++|||||++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 35688889999999999999985 46999999999653 223345688999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||++||+|.+++..... ..+++..++.++.||+.||+|||++ +||||||||+||+++.++.+||+|||+++....
T Consensus 263 mEy~~gg~L~~~l~~~~~-~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQ-AGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp ECCCCSCBHHHHHHSSSS-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEcCCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 999999999999876542 3489999999999999999999999 999999999999999999999999999987653
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. .....+||+.|+|||++.+..++.++|||||||++|||++|+.||....... .............
T Consensus 339 ~~-----~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~~~~i~~~i~~~~------- 405 (576)
T 2acx_A 339 GQ-----TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVERLVKEVP------- 405 (576)
T ss_dssp TC-----CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-CHHHHHHHHHHCC-------
T ss_pred Cc-----cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-hHHHHHHHhhccc-------
Confidence 21 1234589999999999999899999999999999999999999997532211 1122222222111
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-----CHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-----TMKDVAA 1051 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-----s~~~v~~ 1051 (1117)
..++...+..+..+++. |++.||++|| +++|+++
T Consensus 406 -~~~p~~~s~~~~dLI~~------lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 406 -EEYSERFSPQARSLCSQ------LLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp -CCCCTTSCHHHHHHHHH------HTCSSGGGSTTCSSSHHHHHHT
T ss_pred -ccCCccCCHHHHHHHHH------hccCCHHHcCCCCCCCHHHHHh
Confidence 12233445566666665 9999999999 7788865
No 167
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=1.9e-37 Score=351.40 Aligned_cols=262 Identities=22% Similarity=0.348 Sum_probs=209.0
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC------CCcEEEEEEeecCCc-cchHHHHHHHHHHhccCCCCcceEEeeeecCCc
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP------SGLTVAVKRFRASDK-ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT 846 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~ 846 (1117)
..++|++.+.||+|+||.||+|.+. +++.||||++..... ....++.+|++++++++||||+++++++.+.+.
T Consensus 23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 102 (322)
T 1p4o_A 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP 102 (322)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSS
T ss_pred hhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCc
Confidence 3567899999999999999998753 367899999975432 234568899999999999999999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCC-------CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCccee
Q 001238 847 KLLFYDYMPNGTLGMLLHDGEC-------AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCL 919 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl 919 (1117)
.++||||+++|+|.+++..... ...+++..+++++.|+++||+|||++ +|+||||||+||+++.++.+||
T Consensus 103 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl 179 (322)
T 1p4o_A 103 TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKI 179 (322)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEE
T ss_pred cEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEE
Confidence 9999999999999999875321 13478999999999999999999999 9999999999999999999999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
+|||+++....... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||... ...+....
T Consensus 180 ~Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-----~~~~~~~~ 252 (322)
T 1p4o_A 180 GDFGMTRDIYETDY--YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-----SNEQVLRF 252 (322)
T ss_dssp CCTTCCCGGGGGGC--EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-----CHHHHHHH
T ss_pred CcCccccccccccc--cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC-----CHHHHHHH
Confidence 99999986643211 122234467899999999999999999999999999999999 89998642 11222222
Q ss_pred HHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 999 HLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 999 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
..... . +..+...+..+.+++.. |++.+|++||++.++++.|++...
T Consensus 253 ~~~~~-~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 253 VMEGG-L------LDKPDNCPDMLFELMRM------CWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HHTTC-C------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHcCC-c------CCCCCCCCHHHHHHHHH------HcCCCcccCcCHHHHHHHHHHhhc
Confidence 22211 1 11123334455555555 999999999999999999988754
No 168
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=5.6e-37 Score=347.30 Aligned_cols=251 Identities=23% Similarity=0.357 Sum_probs=204.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc------chHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI------STGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ..+++.+|++++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 456899999999999999999854 6899999999764321 356799999999999999999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC----cceecccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY----ESCLADFG 923 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~----~~kl~DfG 923 (1117)
++||||+++++|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQK---ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEEECCCCSCBHHHHHHTC---SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 9999999999999999764 3489999999999999999999999 999999999999999887 79999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK 1003 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~ 1003 (1117)
+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+.........
T Consensus 165 ~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~ 234 (321)
T 2a2a_A 165 LAHEIEDGV-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-----TKQETLANITSVS 234 (321)
T ss_dssp TCEECCTTC-----CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-----SHHHHHHHHHTTC
T ss_pred cceecCccc-----cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHhcc
Confidence 998765422 223457999999999999999999999999999999999999999642 2222333322222
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.. .++......+..+.++++ .|++.||++||++.++++
T Consensus 235 ~~----~~~~~~~~~~~~~~~li~------~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 235 YD----FDEEFFSHTSELAKDFIR------KLLVKETRKRLTIQEALR 272 (321)
T ss_dssp CC----CCHHHHTTCCHHHHHHHH------TTSCSSTTTSCCHHHHHH
T ss_pred cc----cChhhhcccCHHHHHHHH------HHcCCChhhCcCHHHHhc
Confidence 11 112222333444555544 499999999999999986
No 169
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=354.12 Aligned_cols=245 Identities=22% Similarity=0.306 Sum_probs=201.5
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEE-cCCCcEEEEEEeecCCc--------cchHHHHHHHHHHhccCCCCcceEEeeee
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVT-LPSGLTVAVKRFRASDK--------ISTGAFSSEIATLSRIRHRNIVRLLGWGA 842 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~-~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~H~niv~l~~~~~ 842 (1117)
+...++|++.+.||+|+||+||+|. ..+++.||||+++.... ...+.+.+|++++++++||||+++++++.
T Consensus 20 ~~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~ 99 (335)
T 3dls_A 20 GEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE 99 (335)
T ss_dssp THHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE
T ss_pred cccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe
Confidence 3456789999999999999999997 45789999999976532 13346788999999999999999999999
Q ss_pred cCCceEEEEEecCCC-ChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecc
Q 001238 843 NRKTKLLFYDYMPNG-TLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLAD 921 (1117)
Q Consensus 843 ~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~D 921 (1117)
+.+..++||||+.+| +|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 100 ~~~~~~lv~e~~~~g~~l~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~D 173 (335)
T 3dls_A 100 NQGFFQLVMEKHGSGLDLFAFIDRHP---RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLID 173 (335)
T ss_dssp CSSEEEEEEECCTTSCBHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECC
T ss_pred eCCEEEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEee
Confidence 999999999999777 9999997653 489999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHH
Q 001238 922 FGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHL 1000 (1117)
Q Consensus 922 fGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~ 1000 (1117)
||+++...... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||..... ..
T Consensus 174 fg~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----------~~ 237 (335)
T 3dls_A 174 FGSAAYLERGK-----LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE-----------TV 237 (335)
T ss_dssp CTTCEECCTTC-----CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG-----------GT
T ss_pred cccceECCCCC-----ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH-----------HH
Confidence 99998765422 2234679999999999988776 7899999999999999999999964110 00
Q ss_pred hcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1001 KSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1001 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
... ...+...+..+.++++. |++.||++||++.++++.
T Consensus 238 ~~~--------~~~~~~~~~~l~~li~~------~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 238 EAA--------IHPPYLVSKELMSLVSG------LLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp TTC--------CCCSSCCCHHHHHHHHH------HTCSSGGGSCCHHHHHHC
T ss_pred hhc--------cCCCcccCHHHHHHHHH------HccCChhhCcCHHHHhcC
Confidence 000 01122234455555555 999999999999999874
No 170
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.5e-37 Score=373.76 Aligned_cols=258 Identities=27% Similarity=0.427 Sum_probs=208.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEec
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.++|++.+.||+|+||+||+|.+.++..||||+++... ...++|.+|++++++++|||||++++++.+ +..++||||+
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~ 343 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 343 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehh
Confidence 35688889999999999999998888889999998644 346789999999999999999999999876 6789999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCC
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~ 934 (1117)
++|+|.+++.... ...+++.+++.++.||++||+|||++ +|+||||||+|||+++++.+||+|||+++.....
T Consensus 344 ~~gsL~~~l~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~--- 416 (535)
T 2h8h_A 344 SKGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN--- 416 (535)
T ss_dssp TTEEHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH---
T ss_pred cCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCC---
Confidence 9999999997532 23489999999999999999999999 9999999999999999999999999999876421
Q ss_pred ccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
.........++..|+|||++....++.++|||||||++|||++ |+.||... ...+.+....... . ..
T Consensus 417 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~-----~~~~~~~~i~~~~-~------~~ 484 (535)
T 2h8h_A 417 EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVERGY-R------MP 484 (535)
T ss_dssp HHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTC-----CHHHHHHHHHTTC-C------CC
T ss_pred ceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----CHHHHHHHHHcCC-C------CC
Confidence 1122334457889999999999999999999999999999999 99999642 1122222222211 1 11
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.+...+..+.+++.. ||+.||++||++.+|++.|+.+...
T Consensus 485 ~~~~~~~~l~~li~~------cl~~dP~~RPt~~~l~~~L~~~~~~ 524 (535)
T 2h8h_A 485 CPPECPESLHDLMCQ------CWRKEPEERPTFEYLQAFLEDYFTS 524 (535)
T ss_dssp CCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred CCCCCCHHHHHHHHH------HcCCChhHCcCHHHHHHHHHHHhhc
Confidence 122334455555554 9999999999999999999987643
No 171
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=2.6e-37 Score=352.05 Aligned_cols=251 Identities=20% Similarity=0.251 Sum_probs=201.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|..+ +|+.||||++..... ...+|++++.++ +||||+++++++.+.+..|+|||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E 96 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE 96 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 457899999999999999999754 689999999976533 345788998888 79999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC----Ccceeccccccccc
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER----YESCLADFGLARLV 928 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~----~~~kl~DfGla~~~ 928 (1117)
|+++|+|.+++... +.+++.++..++.||+.||+|||++ +|+||||||+||++.++ +.+||+|||+++..
T Consensus 97 ~~~gg~L~~~i~~~---~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~ 170 (342)
T 2qr7_A 97 LMKGGELLDKILRQ---KFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL 170 (342)
T ss_dssp CCCSCBHHHHHHTC---TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred CCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence 99999999998764 3489999999999999999999999 99999999999998543 35999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
..... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....+.............
T Consensus 171 ~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~~~~i~~~~~~~~- 243 (342)
T 2qr7_A 171 RAENG----LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD--DTPEEILARIGSGKFSLS- 243 (342)
T ss_dssp BCTTC----CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT--SCHHHHHHHHHHCCCCCC-
T ss_pred cCCCC----ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc--CCHHHHHHHHccCCcccC-
Confidence 54321 23345789999999999888899999999999999999999999975322 223333333333222111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.......+..+.++++. |++.||++||++.++++
T Consensus 244 ---~~~~~~~s~~~~~li~~------~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 244 ---GGYWNSVSDTAKDLVSK------MLHVDPHQRLTAALVLR 277 (342)
T ss_dssp ---STTTTTSCHHHHHHHHH------HTCSSTTTSCCHHHHTT
T ss_pred ---ccccccCCHHHHHHHHH------HCCCChhHCcCHHHHhc
Confidence 11223344555666655 99999999999999987
No 172
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=361.28 Aligned_cols=255 Identities=21% Similarity=0.227 Sum_probs=201.3
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
..++|++.+.||+|+||+||+|+. .+|+.||||++++.. ....+.+.+|.+++..++||||+++++++.+.+..|+
T Consensus 59 ~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~l 138 (412)
T 2vd5_A 59 QRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYL 138 (412)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEE
T ss_pred ChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 457899999999999999999986 469999999997532 2234468899999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... ..+++..++.++.||+.||+|||++ +|+||||||+|||++.++++||+|||+++...
T Consensus 139 VmE~~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla~~~~ 213 (412)
T 2vd5_A 139 VMEYYVGGDLLTLLSKFG--ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSCLKLR 213 (412)
T ss_dssp EECCCCSCBHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEcCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhheecc
Confidence 999999999999997532 2489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhc-------cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYAN-------MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKS 1002 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~ 1002 (1117)
... .......+||+.|+|||++. ...++.++|||||||++|||++|+.||... ...+........
T Consensus 214 ~~~---~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~-----~~~~~~~~i~~~ 285 (412)
T 2vd5_A 214 ADG---TVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD-----STAETYGKIVHY 285 (412)
T ss_dssp TTS---CEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTH
T ss_pred CCC---ccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC-----CHHHHHHHHHhc
Confidence 422 12234568999999999987 357899999999999999999999999642 112222222211
Q ss_pred CCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCC---CCHHHHHH
Q 001238 1003 KKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDR---PTMKDVAA 1051 (1117)
Q Consensus 1003 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~R---Ps~~~v~~ 1051 (1117)
... ...|......+....++++. |+. +|++| |+++|+.+
T Consensus 286 ~~~---~~~p~~~~~~s~~~~dli~~------lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 286 KEH---LSLPLVDEGVPEEARDFIQR------LLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HHH---CCCC----CCCHHHHHHHHT------TSS-CGGGCTTTTTHHHHHT
T ss_pred ccC---cCCCccccCCCHHHHHHHHH------HcC-ChhhcCCCCCHHHHhc
Confidence 100 00122223344556666655 998 89988 58888866
No 173
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=341.49 Aligned_cols=252 Identities=22% Similarity=0.382 Sum_probs=183.6
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
+...++|++.+.||+|+||.||+|.. .+|+.||||++.... ....+++.+|++++++++||||+++++++.+.+..
T Consensus 7 g~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 86 (278)
T 3cok_A 7 GEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYV 86 (278)
T ss_dssp CSSGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEE
T ss_pred ccccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeE
Confidence 34456799999999999999999985 579999999996532 22346789999999999999999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||+++++|.+++.... ..+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 87 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~ 161 (278)
T 3cok_A 87 YLVLEMCHNGEMNRYLKNRV--KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQ 161 (278)
T ss_dssp EEEEECCTTEEHHHHHHTCS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEecCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceee
Confidence 99999999999999998642 3489999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
..... .......||+.|+|||.+....++.++||||||+++|||++|+.||....... .......
T Consensus 162 ~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~------ 226 (278)
T 3cok_A 162 LKMPH----EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN-----TLNKVVL------ 226 (278)
T ss_dssp CC--------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------CCS------
T ss_pred ccCCC----CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH-----HHHHHhh------
Confidence 64321 12234578999999999998899999999999999999999999997532211 1111000
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.+...+...+..+.+++.. |++.||++||++.++++
T Consensus 227 --~~~~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 227 --ADYEMPSFLSIEAKDLIHQ------LLRRNPADRLSLSSVLD 262 (278)
T ss_dssp --SCCCCCTTSCHHHHHHHHH------HSCSSGGGSCCHHHHTT
T ss_pred --cccCCccccCHHHHHHHHH------HcccCHhhCCCHHHHhc
Confidence 0112233344455555554 99999999999999876
No 174
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=5.1e-37 Score=356.46 Aligned_cols=251 Identities=23% Similarity=0.356 Sum_probs=196.5
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccC--CCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIR--HRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~~~~lv~ 851 (1117)
+.|++.+.||+|+||+||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++...+..|+||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 4699999999999999999998889999999997543 334567899999999996 599999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
| +.+++|.+++.... .+++.++..++.||++||+|||++ +|+||||||+|||++ ++.+||+|||+++.....
T Consensus 136 E-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp E-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred e-cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 9 56889999998653 488999999999999999999999 999999999999996 589999999999876532
Q ss_pred CCCccccCCccccccccCChhhhcc-----------CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHH
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANM-----------TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHL 1000 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~ 1000 (1117)
.. .......+||+.|+|||++.. ..++.++|||||||++|||++|+.||.... .....+....
T Consensus 208 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~----~~~~~~~~~~ 281 (390)
T 2zmd_A 208 TT--SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII----NQISKLHAII 281 (390)
T ss_dssp --------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC----CHHHHHHHHH
T ss_pred Cc--cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh----HHHHHHHHHh
Confidence 21 112345679999999999865 468899999999999999999999996422 1122233322
Q ss_pred hcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1001 KSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1001 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
..... ...+...+..+.+++.. |++.||++||++.++++.
T Consensus 282 ~~~~~------~~~~~~~~~~~~~li~~------~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 282 DPNHE------IEFPDIPEKDLQDVLKC------CLKRDPKQRISIPELLAH 321 (390)
T ss_dssp CTTSC------CCCCCCSCHHHHHHHHH------HTCSSTTTSCCHHHHHTS
T ss_pred Ccccc------CCCCccchHHHHHHHHH------HcccChhhCCCHHHHhhC
Confidence 22111 11223334455555554 999999999999999874
No 175
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=354.88 Aligned_cols=260 Identities=24% Similarity=0.339 Sum_probs=189.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccC-CCCcceEEeeee--------cC
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRNIVRLLGWGA--------NR 844 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~--------~~ 844 (1117)
..+|++.++||+|+||.||+|.+ .+++.||||++........+.+.+|+.+++++. ||||+++++++. ..
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 35788999999999999999985 478999999997766666678899999999996 999999999883 33
Q ss_pred CceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--eeeeccccCeEEEcCCCcceeccc
Q 001238 845 KTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPA--ILHRDVKSHNILLGERYESCLADF 922 (1117)
Q Consensus 845 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivHrDlkp~Nill~~~~~~kl~Df 922 (1117)
...++||||+. |+|.+++......+.+++.+++.++.|++.||+|||++ + |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecC
Confidence 45789999995 78988887543345599999999999999999999998 7 999999999999999999999999
Q ss_pred cccccccCCCCCcc--------ccCCccccccccCChhhh---ccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChh
Q 001238 923 GLARLVEDDSGGSF--------SANPQFAGSYGYIAPEYA---NMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQH 991 (1117)
Q Consensus 923 Gla~~~~~~~~~~~--------~~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~ 991 (1117)
|+++.......... .......||+.|+|||++ ....++.++||||||+++|||++|+.||.....
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~---- 258 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAK---- 258 (337)
T ss_dssp TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhH----
Confidence 99987654322110 111245699999999998 567789999999999999999999999964211
Q ss_pred HHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 992 VIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
...... ... ..........+.++++. |++.||++||++.++++.|+.+...
T Consensus 259 -~~~~~~----~~~------~~~~~~~~~~~~~li~~------~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 259 -LRIVNG----KYS------IPPHDTQYTVFHSLIRA------MLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp ------------CC------CCTTCCSSGGGHHHHHH------HSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -HHhhcC----ccc------CCcccccchHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHhc
Confidence 111111 100 01112223345555555 9999999999999999999988754
No 176
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.5e-37 Score=345.59 Aligned_cols=261 Identities=20% Similarity=0.255 Sum_probs=197.1
Q ss_pred ccCCCCC-CeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAG-NIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~-~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.+.|++. +.||+|+||+||+|.. .+++.||||++........+.+.+|+++++++ +||||+++++++.+.+..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 3467774 7899999999999985 46899999999876666677899999999985 7999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc---ceeccccccccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE---SCLADFGLARLV 928 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~---~kl~DfGla~~~ 928 (1117)
||+++|+|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++. +||+|||+++..
T Consensus 91 e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~ 164 (316)
T 2ac3_A 91 EKMRGGSILSHIHKR---RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164 (316)
T ss_dssp ECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred EcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence 999999999999764 3489999999999999999999999 9999999999999998776 899999999866
Q ss_pred cCCCCC---ccccCCccccccccCChhhhcc-----CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCCh---------h
Q 001238 929 EDDSGG---SFSANPQFAGSYGYIAPEYANM-----TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQ---------H 991 (1117)
Q Consensus 929 ~~~~~~---~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~---------~ 991 (1117)
...... .........||+.|+|||++.. ..++.++|||||||++|||++|+.||......+. .
T Consensus 165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 244 (316)
T 2ac3_A 165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA 244 (316)
T ss_dssp -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence 432111 1112234569999999999875 5688999999999999999999999976432210 0
Q ss_pred -HHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 992 -VIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 992 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
................. ......+..+.++++. |++.||++||++.|+++
T Consensus 245 ~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~li~~------~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 245 CQNMLFESIQEGKYEFPD----KDWAHISCAAKDLISK------LLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHCCCCCCH----HHHTTSCHHHHHHHHH------HSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHhccCcccCc----hhcccCCHHHHHHHHH------HhhCChhhCCCHHHHhc
Confidence 11122222222211111 0111233445555554 99999999999999987
No 177
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3e-37 Score=345.67 Aligned_cols=264 Identities=23% Similarity=0.331 Sum_probs=205.0
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-C---CcEEEEEEeecCCc-cchHHHHHHHHHHhccCCCCcceEEeeeecCCce-EE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-S---GLTVAVKRFRASDK-ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK-LL 849 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~-~l 849 (1117)
..|...++||+|+||+||+|.+. + +..||+|++..... ...+.+.+|++++++++||||+++++++.+.+.. ++
T Consensus 21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 100 (298)
T 3pls_A 21 VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV 100 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eEEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE
Confidence 35667789999999999999742 2 33799999875432 3456789999999999999999999999876655 99
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+.+|+|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 101 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 175 (298)
T 3pls_A 101 LLPYMCHGDLLQFIRSPQ--RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDIL 175 (298)
T ss_dssp EECCCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTT
T ss_pred EEecccCCCHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCccccc
Confidence 999999999999998643 3489999999999999999999999 99999999999999999999999999998664
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
..............+|+.|+|||.+.+..++.++||||||+++|||++|..|+.... ........+. ... .
T Consensus 176 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-~~~~~~~~~~---~~~-~---- 246 (298)
T 3pls_A 176 DREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-DPFDLTHFLA---QGR-R---- 246 (298)
T ss_dssp TGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CGGGHHHHHH---TTC-C----
T ss_pred CCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC-CHHHHHHHhh---cCC-C----
Confidence 432212223345678999999999999999999999999999999999655543211 1222222221 111 1
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
...+...+..+.++++. |++.+|++||++.++++.|+++.....
T Consensus 247 --~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~ll~~l~~~~~~l~ 290 (298)
T 3pls_A 247 --LPQPEYCPDSLYQVMQQ------CWEADPAVRPTFRVLVGEVEQIVSALL 290 (298)
T ss_dssp --CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHHCC
T ss_pred --CCCCccchHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHHHHh
Confidence 11122334455555554 999999999999999999999876543
No 178
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=8.2e-37 Score=340.85 Aligned_cols=258 Identities=25% Similarity=0.381 Sum_probs=203.2
Q ss_pred cCCCCCC-eeeecCCeEEEEEEc---CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 776 RSLTAGN-IIGQGRSGIVYKVTL---PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 776 ~~~~~~~-~lg~G~fg~Vy~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
++|++.+ .||+|+||+||+|.+ .+++.||||+++... ....+++.+|++++++++||||+++++++ ..+..++
T Consensus 16 ~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~l 94 (291)
T 1xbb_A 16 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWML 94 (291)
T ss_dssp GGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEE
T ss_pred hhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEE
Confidence 4677777 999999999999953 347899999997543 22356799999999999999999999998 5677899
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++++|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 95 v~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 95 VMEMAELGPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEECCTTEEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEeCCCCCHHHHHHhC---cCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 99999999999999764 3489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... .........+|+.|+|||++....++.++||||||+++|||++ |+.||... ....... .+.....
T Consensus 169 ~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--~~~~~~~----~~~~~~~--- 238 (291)
T 1xbb_A 169 ADEN-YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTA----MLEKGER--- 238 (291)
T ss_dssp TTCS-EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHH----HHHTTCC---
T ss_pred cCCC-cccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCC--CHHHHHH----HHHcCCC---
Confidence 4321 1122233456789999999998899999999999999999999 99999652 1112222 2222111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
+..+...+..+.++++. ||+.||++||++.++++.|+++...
T Consensus 239 ---~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~l~~~L~~~~~~ 280 (291)
T 1xbb_A 239 ---MGCPAGCPREMYDLMNL------CWTYDVENRPGFAAVELRLRNYYYD 280 (291)
T ss_dssp ---CCCCTTCCHHHHHHHHH------HTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHHH
Confidence 12233444556666655 9999999999999999999987543
No 179
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=6e-37 Score=340.64 Aligned_cols=251 Identities=22% Similarity=0.400 Sum_probs=204.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeec----------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGAN---------- 843 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~---------- 843 (1117)
..+|++.+.||+|+||.||+|... +|+.||+|+++... +.+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 356889999999999999999865 79999999997643 467899999999999999999998754
Q ss_pred ------CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcc
Q 001238 844 ------RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYES 917 (1117)
Q Consensus 844 ------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~ 917 (1117)
....++||||+++|+|.+++.... ...+++..+..++.|+++||+|||++ +|+||||||+||++++++.+
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGG-GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEE
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCE
Confidence 345789999999999999997543 23489999999999999999999999 99999999999999999999
Q ss_pred eeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHH
Q 001238 918 CLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVR 997 (1117)
Q Consensus 918 kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~ 997 (1117)
||+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|..|+.. ......
T Consensus 162 kl~Dfg~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~-------~~~~~~ 229 (284)
T 2a19_B 162 KIGDFGLVTSLKNDG-----KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFE-------TSKFFT 229 (284)
T ss_dssp EECCCTTCEESSCCS-----CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHH-------HHHHHH
T ss_pred EECcchhheeccccc-----cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchh-------HHHHHH
Confidence 999999998765432 22345699999999999999999999999999999999999988742 111111
Q ss_pred HHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 998 DHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 998 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
.. ... .++...+..+.++++. |++.||++||++.++++.++.+.+.+.
T Consensus 230 ~~-~~~---------~~~~~~~~~~~~li~~------~l~~dp~~Rps~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 230 DL-RDG---------IISDIFDKKEKTLLQK------LLSKKPEDRPNTSEILRTLTVWKKSPE 277 (284)
T ss_dssp HH-HTT---------CCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred Hh-hcc---------cccccCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHhhCCC
Confidence 11 111 1223334455555554 999999999999999999999876544
No 180
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.1e-36 Score=340.60 Aligned_cols=267 Identities=22% Similarity=0.305 Sum_probs=208.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEee-eecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGW-GANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~-~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||++..... .+++.+|+++++.++|++++..+.+ +...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46799999999999999999985 6799999999876433 3568999999999998876665554 466677899999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---cCCCcceecccccccccc
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL---GERYESCLADFGLARLVE 929 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill---~~~~~~kl~DfGla~~~~ 929 (1117)
|+ +++|.+++.... +.+++.++..++.|+++||+|||++ +|+||||||+||++ +.++.+||+|||+++...
T Consensus 86 ~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 159 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp CC-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred ec-CCCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccc
Confidence 99 999999997432 3489999999999999999999999 99999999999999 488899999999998776
Q ss_pred CCCCCc---cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCC-ChhHHHHHHHHHhcCCC
Q 001238 930 DDSGGS---FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPD-GQHVIQWVRDHLKSKKD 1005 (1117)
Q Consensus 930 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~-~~~~~~~~~~~~~~~~~ 1005 (1117)
...... ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .......+.......
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-- 237 (296)
T 3uzp_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST-- 237 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS--
T ss_pred ccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCC--
Confidence 533211 11234568999999999999999999999999999999999999999764322 122222222211111
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
+.. .+....+..+.++++. |++.||++||++.++++.|+++.....
T Consensus 238 ~~~----~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~l~~~l~~~~~~~~ 283 (296)
T 3uzp_A 238 PIE----VLCKGYPSEFATYLNF------CRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp CHH----HHTTTSCHHHHHHHHH------HHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred chH----HHHhhCCHHHHHHHHH------HHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence 111 1122334455555555 999999999999999999999876544
No 181
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=8.4e-37 Score=341.65 Aligned_cols=267 Identities=21% Similarity=0.302 Sum_probs=204.9
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEee-eecCCceEEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGW-GANRKTKLLFY 851 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~-~~~~~~~~lv~ 851 (1117)
..++|++.+.||+|+||+||+|.. .+++.||||++..... .+++.+|+++++.++|++++..+.+ +...+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 346899999999999999999985 5789999998765432 3468899999999998877666654 46677889999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---cCCCcceeccccccccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL---GERYESCLADFGLARLV 928 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill---~~~~~~kl~DfGla~~~ 928 (1117)
||+ +++|.+++.... +.+++.++..++.|+++||+|||++ +|+||||||+||++ +.++.+||+|||+++..
T Consensus 85 e~~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~ 158 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY 158 (296)
T ss_dssp ECC-CCBHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred Ecc-CCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceec
Confidence 999 999999987532 3489999999999999999999999 99999999999999 78899999999999877
Q ss_pred cCCCCCc---cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCC-hhH-HHHHHHHHhcC
Q 001238 929 EDDSGGS---FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDG-QHV-IQWVRDHLKSK 1003 (1117)
Q Consensus 929 ~~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~-~~~-~~~~~~~~~~~ 1003 (1117)
....... ........||+.|+|||++.+..++.++|||||||++|||++|+.||....... ... ..........
T Consensus 159 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~- 237 (296)
T 4hgt_A 159 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST- 237 (296)
T ss_dssp BCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS-
T ss_pred cCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc-
Confidence 6543211 123345689999999999999999999999999999999999999997643221 122 2222221111
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
+.. ......+..+.++++. |++.||++||++.++++.|+++.....
T Consensus 238 --~~~----~~~~~~~~~l~~li~~------~l~~~p~~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 238 --PIE----VLCKGYPSEFATYLNF------CRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp --CHH----HHTTTSCHHHHHHHHH------HHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred --hhh----hhhccCCHHHHHHHHH------HHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 111 1122334455565555 999999999999999999998876543
No 182
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=353.14 Aligned_cols=265 Identities=23% Similarity=0.334 Sum_probs=204.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeee----cCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGA----NRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~----~~~~~~l 849 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||||++........+.+.+|++++++++||||+++++++. .....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 46799999999999999999985 578999999997766666778999999999999999999999886 3346789
Q ss_pred EEEecCCCChhhhhcCC-CCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDG-ECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
||||+++|+|.+++... .....+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 99999999999988752 1234589999999999999999999999 9999999999999999999999999998765
Q ss_pred cCCCCCc-----cccCCccccccccCChhhhccCC---CCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHH
Q 001238 929 EDDSGGS-----FSANPQFAGSYGYIAPEYANMTK---ISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHL 1000 (1117)
Q Consensus 929 ~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~ 1000 (1117)
....... ........||+.|+|||++.... ++.++||||||+++|||++|+.||.............+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~--- 261 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ--- 261 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH---
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh---
Confidence 3211110 00112345799999999987543 689999999999999999999999532111222222111
Q ss_pred hcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1001 KSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1001 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
..... ......+..+.+++.. |++.||++||++.++++.|+.+..
T Consensus 262 -~~~~~------~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 262 -NQLSI------PQSPRHSSALWQLLNS------MMTVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp -CC--C------CCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred -ccCCC------CccccCCHHHHHHHHH------HhhcChhhCCCHHHHHHHhhhcCC
Confidence 11000 1112233455555555 999999999999999999998764
No 183
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=8e-37 Score=365.11 Aligned_cols=254 Identities=19% Similarity=0.255 Sum_probs=205.7
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|.+.+.||+|+||+||+|+.+ +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 57888899999999999999864 69999999997532 233467889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 852 DYMPNGTLGMLLHDGE-CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
||++||+|.+++.... ....+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 9999999999987643 233589999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ...............
T Consensus 342 ~~----~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~-~~~~~~~~~i~~~~~------ 410 (543)
T 3c4z_A 342 GQ----TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK-VENKELKQRVLEQAV------ 410 (543)
T ss_dssp TC----CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC-CCHHHHHHHHHHCCC------
T ss_pred CC----cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc-hhHHHHHHHHhhccc------
Confidence 32 1223458999999999999999999999999999999999999999753221 122333333333221
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCH-----HHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTM-----KDVAA 1051 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~-----~~v~~ 1051 (1117)
.++...+..+..+++. |++.||++||++ .++.+
T Consensus 411 --~~p~~~s~~~~~li~~------lL~~dP~~R~~~~~~~a~ei~~ 448 (543)
T 3c4z_A 411 --TYPDKFSPASKDFCEA------LLQKDPEKRLGFRDGSCDGLRT 448 (543)
T ss_dssp --CCCTTSCHHHHHHHHH------HSCSSGGGSCCCBTTBSHHHHT
T ss_pred --CCCcccCHHHHHHHHH------hccCCHhHCCCCcccCHHHHHc
Confidence 2233445566666665 999999999975 55554
No 184
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=5.5e-37 Score=341.05 Aligned_cols=252 Identities=22% Similarity=0.314 Sum_probs=195.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|.+.+.||+|+||+||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 35788999999999999999975 468999999987643 3346789999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---cCCCcceeccccccccc
Q 001238 853 YMPNGTLGMLLHDGE-CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL---GERYESCLADFGLARLV 928 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill---~~~~~~kl~DfGla~~~ 928 (1117)
|+++|+|.+++.... ....+++..+..++.|+++||+|||++ +|+||||||+||++ +.++.+||+|||+++..
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 999999999886431 123489999999999999999999999 99999999999999 45678999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... ......||+.|+|||++. ..++.++||||+|+++|||++|+.||... ..................
T Consensus 178 ~~~~-----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~-----~~~~~~~~~~~~~~~~~~ 246 (285)
T 3is5_A 178 KSDE-----HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGT-----SLEEVQQKATYKEPNYAV 246 (285)
T ss_dssp --------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCCCCC
T ss_pred CCcc-----cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCC-----CHHHHHhhhccCCccccc
Confidence 4321 233457999999999886 57899999999999999999999999642 122222222222111110
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.....+..+.++++. |++.||++||++.|+++
T Consensus 247 -----~~~~~~~~~~~li~~------~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 247 -----ECRPLTPQAVDLLKQ------MLTKDPERRPSAAQVLH 278 (285)
T ss_dssp -------CCCCHHHHHHHHH------HTCSCTTTSCCHHHHHT
T ss_pred -----ccCcCCHHHHHHHHH------HccCChhhCcCHHHHhc
Confidence 011123345555554 99999999999999976
No 185
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.1e-36 Score=338.40 Aligned_cols=258 Identities=23% Similarity=0.346 Sum_probs=204.3
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc------cchHHHHHHHHHHhccCCCCcceEEeeeecCCceE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK------ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
++|++.+.||+|+||+||+|... +|+.||+|+++.... ...+.+.+|++++++++||||+++++++.+.+..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 46888999999999999999865 689999999875422 23567999999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC----cceeccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY----ESCLADFGL 924 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~----~~kl~DfGl 924 (1117)
+||||+++++|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++ .+||+|||+
T Consensus 85 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEK---ESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEeecCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 999999999999999753 3489999999999999999999999 999999999999999877 899999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
++...... ......||+.|+|||++....++.++||||||+++|||++|+.||... ..............
T Consensus 159 ~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~ 228 (283)
T 3bhy_A 159 AHKIEAGN-----EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE-----TKQETLTNISAVNY 228 (283)
T ss_dssp CEECC-------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTCC
T ss_pred ceeccCCC-----cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc-----chHHHHHHhHhccc
Confidence 98764321 223456899999999999899999999999999999999999999642 11222222222211
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH--HHHhhhcC
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA--LLREIRQE 1059 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~--~L~~~~~~ 1059 (1117)
.. .+......+..+.++++ .|++.||++||++.++++ .++.++..
T Consensus 229 ~~----~~~~~~~~~~~~~~li~------~~l~~dp~~Rps~~~~l~h~~~~~~~~~ 275 (283)
T 3bhy_A 229 DF----DEEYFSNTSELAKDFIR------RLLVKDPKRRMTIAQSLEHSWIKAIRRR 275 (283)
T ss_dssp CC----CHHHHTTCCHHHHHHHH------TTSCSSGGGSCCHHHHHHCHHHHHHHHC
T ss_pred CC----cchhcccCCHHHHHHHH------HHccCCHhHCcCHHHHHhCHHHHHHHHH
Confidence 11 11122233344455444 499999999999999988 55666544
No 186
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=364.41 Aligned_cols=322 Identities=21% Similarity=0.184 Sum_probs=281.3
Q ss_pred cEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccc
Q 001238 270 QYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVN 349 (1117)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 349 (1117)
+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777777777 5666554 57888888888888777778888888888888888888777888888888888888888
Q ss_pred cccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcc
Q 001238 350 QISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPR 429 (1117)
Q Consensus 350 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 429 (1117)
++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 88866666778888888888888888877788888888888888888888888888888999999999999999876666
Q ss_pred cccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCC
Q 001238 430 GIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNL 509 (1117)
Q Consensus 430 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 509 (1117)
.+..+++|+.|++++|++.+..+..|..+++|++|++++|.+.+.+|..+....+|+.|+|++|++++..+..|..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 78889999999999999998888899999999999999998888888777777899999999999996666789999999
Q ss_pred ceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecccc
Q 001238 510 TFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSN 589 (1117)
Q Consensus 510 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 589 (1117)
++|+|++|.|++..+..|..+++|+.|++++|+++++.+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999999999988888999999999999999999999999999999999999999999888889999999999999999
Q ss_pred ccccc
Q 001238 590 QLSGN 594 (1117)
Q Consensus 590 ~l~~~ 594 (1117)
.++..
T Consensus 331 ~l~c~ 335 (477)
T 2id5_A 331 PLACD 335 (477)
T ss_dssp CEECS
T ss_pred CccCc
Confidence 99854
No 187
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.1e-36 Score=338.59 Aligned_cols=252 Identities=22% Similarity=0.324 Sum_probs=202.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 46799999999999999999975 468999999997543 233467889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc---ceeccccccccc
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE---SCLADFGLARLV 928 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~---~kl~DfGla~~~ 928 (1117)
||+++++|.+.+... +.+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||++...
T Consensus 85 e~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~ 158 (284)
T 3kk8_A 85 DLVTGGELFEDIVAR---EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 158 (284)
T ss_dssp CCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred ecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence 999999998888754 3489999999999999999999999 9999999999999987655 999999999876
Q ss_pred cCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 929 EDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 929 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||... ..................
T Consensus 159 ~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~-----~~~~~~~~~~~~~~~~~~ 228 (284)
T 3kk8_A 159 NDSE-----AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-----DQHRLYAQIKAGAYDYPS 228 (284)
T ss_dssp CSSC-----BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCCCCT
T ss_pred ccCc-----cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC-----chhHHHHHHHhccccCCc
Confidence 5322 233467999999999999999999999999999999999999999642 112222222222211111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
+. ....+..+.++++. |++.||++||++.++++.
T Consensus 229 ---~~-~~~~~~~~~~li~~------~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 229 ---PE-WDTVTPEAKSLIDS------MLTVNPKKRITADQALKV 262 (284)
T ss_dssp ---TT-TTTSCHHHHHHHHH------HSCSSTTTSCCHHHHTTS
T ss_pred ---hh-hcccCHHHHHHHHH------HcccChhhCCCHHHHhcC
Confidence 11 12233455555555 999999999999999883
No 188
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-37 Score=345.56 Aligned_cols=244 Identities=23% Similarity=0.264 Sum_probs=191.0
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc--cchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK--ISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.++||+|+||+||+|... +|+.||||++..... ....++..|+..+.++ +||||+++++++.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57999999999999999999865 799999999865432 2233455566666555 8999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+ +++|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 137 e~~-~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWG--ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA 210 (311)
T ss_dssp ECC-CCBHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred ecc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence 999 678888876543 3489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
. ......||++|+|||++.+ .++.++|||||||++|||++|..|+.. ..... . +.... ..
T Consensus 211 ~-----~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~-----~~~~~---~-~~~~~-----~~ 270 (311)
T 3p1a_A 211 G-----AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHG-----GEGWQ---Q-LRQGY-----LP 270 (311)
T ss_dssp ---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSS-----HHHHH---H-HTTTC-----CC
T ss_pred C-----CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCC-----ccHHH---H-HhccC-----CC
Confidence 1 2334569999999998875 799999999999999999999776642 11111 1 11111 11
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
+.+....+..+.+++.. |++.||++||++.++++
T Consensus 271 ~~~~~~~~~~l~~li~~------~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 271 PEFTAGLSSELRSVLVM------MLEPDPKLRATAEALLA 304 (311)
T ss_dssp HHHHTTSCHHHHHHHHH------HSCSSTTTSCCHHHHHT
T ss_pred cccccCCCHHHHHHHHH------HcCCChhhCcCHHHHHh
Confidence 22233344555555555 99999999999999986
No 189
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=4.4e-37 Score=351.23 Aligned_cols=247 Identities=26% Similarity=0.363 Sum_probs=198.4
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCcc---chHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKI---STGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
+.|+..+.||+|+||+||+|.. .+|+.||||++...... ..+++.+|++++++++||||+++++++...+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588889999999999999984 57899999999754322 2356889999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||++ |++.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 134 e~~~-g~l~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~- 206 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP- 206 (348)
T ss_dssp ECCS-EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-
T ss_pred ecCC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC-
Confidence 9997 67877775432 3489999999999999999999999 999999999999999999999999999986542
Q ss_pred CCCccccCCccccccccCChhhhc---cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYAN---MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.....||+.|+|||++. ...++.++|||||||++|||++|+.||... .....+..........
T Consensus 207 -------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~-----~~~~~~~~~~~~~~~~-- 272 (348)
T 1u5q_A 207 -------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-----NAMSALYHIAQNESPA-- 272 (348)
T ss_dssp -------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCCC--
T ss_pred -------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-----ChHHHHHHHHhcCCCC--
Confidence 22457999999999884 567899999999999999999999999642 1122222222222111
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHH
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALL 1053 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L 1053 (1117)
......+..+.+++.. ||+.||++||++.++++..
T Consensus 273 ----~~~~~~~~~l~~li~~------~l~~dP~~Rps~~~ll~h~ 307 (348)
T 1u5q_A 273 ----LQSGHWSEYFRNFVDS------CLQKIPQDRPTSEVLLKHR 307 (348)
T ss_dssp ----CCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHTTCH
T ss_pred ----CCCCCCCHHHHHHHHH------HcccChhhCcCHHHHhhCh
Confidence 1122334455665555 9999999999999998743
No 190
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=7.8e-37 Score=339.21 Aligned_cols=257 Identities=24% Similarity=0.387 Sum_probs=202.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC----CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP----SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.+.||+|+||+||+|.+. ++..||+|++.... ....+++.+|++++++++||||+++++++.+ +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 457888999999999999999743 23469999987652 3345678999999999999999999998765 45689
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++++|.+++.... ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 90 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 164 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIE 164 (281)
T ss_dssp EEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC-
T ss_pred EEecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcccc
Confidence 999999999999997642 3489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
.... .......+|+.|+|||++....++.++||||||+++|||++ |+.||... ........+.. .. .
T Consensus 165 ~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~--~~~~~~~~~~~---~~-~--- 232 (281)
T 3cc6_A 165 DEDY---YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL--ENKDVIGVLEK---GD-R--- 232 (281)
T ss_dssp -----------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--CGGGHHHHHHH---TC-C---
T ss_pred cccc---cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC--ChHHHHHHHhc---CC-C---
Confidence 4221 12234467889999999998999999999999999999998 99999642 22222222221 11 1
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
...+...+..+.+++.. |++.||++||++.++++.|+++.+
T Consensus 233 ---~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 233 ---LPKPDLCPPVLYTLMTR------CWDYDPSDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp ---CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCHHHHHHHHH------HccCCchhCcCHHHHHHHHHHHHH
Confidence 11122334455555555 999999999999999999988754
No 191
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=9.8e-37 Score=347.31 Aligned_cols=249 Identities=23% Similarity=0.320 Sum_probs=204.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|.+.+.||+|+||.||++... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 457889999999999999999864 58899999987542 23456788999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++++|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 120 ~e~~~~~~L~~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 193 (335)
T 2owb_A 120 LELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY 193 (335)
T ss_dssp ECCCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EecCCCCCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceeccc
Confidence 9999999999988754 3489999999999999999999999 999999999999999999999999999987653
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. .......||+.|+|||++.+..++.++||||||+++|||++|+.||... ...+..........
T Consensus 194 ~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~~------ 258 (335)
T 2owb_A 194 DG----ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRIKKNEY------ 258 (335)
T ss_dssp TT----CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHHTCC------
T ss_pred Cc----ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC-----CHHHHHHHHhcCCC------
Confidence 22 1233457999999999999999999999999999999999999999642 12222222222211
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
.++...+..+.++++. |++.||++||++.++++.
T Consensus 259 --~~~~~~~~~~~~li~~------~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 259 --SIPKHINPVAASLIQK------MLQTDPTARPTINELLND 292 (335)
T ss_dssp --CCCTTSCHHHHHHHHH------HTCSSGGGSCCGGGGGGS
T ss_pred --CCCccCCHHHHHHHHH------HccCChhHCcCHHHHhcC
Confidence 1223344455555555 999999999999999873
No 192
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=339.35 Aligned_cols=252 Identities=23% Similarity=0.380 Sum_probs=199.3
Q ss_pred CCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecC
Q 001238 777 SLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMP 855 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~ 855 (1117)
.|.....||+|+||.||+|.. .+++.||||++........+.+.+|+++++.++||||+++++++.+.+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 455566899999999999985 5688999999987666666789999999999999999999999999999999999999
Q ss_pred CCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC-CCcceeccccccccccCCCCC
Q 001238 856 NGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE-RYESCLADFGLARLVEDDSGG 934 (1117)
Q Consensus 856 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~-~~~~kl~DfGla~~~~~~~~~ 934 (1117)
+++|.+++........+++..+..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+++......
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-- 177 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN-- 177 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCC--
Confidence 999999998754334477899999999999999999999 9999999999999987 8999999999998764321
Q ss_pred ccccCCccccccccCChhhhccCC--CCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 935 SFSANPQFAGSYGYIAPEYANMTK--ISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 935 ~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.......||+.|+|||++.... ++.++||||||+++|||++|+.||..... .. .......... ..+
T Consensus 178 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~-~~~~~~~~~~-------~~~ 245 (295)
T 2clq_A 178 --PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGE--PQ-AAMFKVGMFK-------VHP 245 (295)
T ss_dssp -----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSS--HH-HHHHHHHHHC-------CCC
T ss_pred --CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCc--hh-HHHHhhcccc-------ccc
Confidence 1233457899999999987643 88999999999999999999999964211 11 1111111111 112
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.++...+..+.+++.. |++.||++||++.++++
T Consensus 246 ~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 246 EIPESMSAEAKAFILK------CFEPDPDKRACANDLLV 278 (295)
T ss_dssp CCCTTSCHHHHHHHHH------TTCSSTTTSCCHHHHHT
T ss_pred cccccCCHHHHHHHHH------HccCChhhCCCHHHHhc
Confidence 3334445556665555 99999999999999976
No 193
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=2.9e-37 Score=348.48 Aligned_cols=263 Identities=26% Similarity=0.413 Sum_probs=196.3
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC----CCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCc-
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP----SGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT- 846 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~- 846 (1117)
..++|.+.+.||+|+||.||+|... +++.||+|+++... ....+.+.+|++++++++||||+++++++.+.+.
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3567899999999999999999743 35589999987542 2334678999999999999999999999877553
Q ss_pred ----eEEEEEecCCCChhhhhcCC---CCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCccee
Q 001238 847 ----KLLFYDYMPNGTLGMLLHDG---ECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCL 919 (1117)
Q Consensus 847 ----~~lv~e~~~~gsL~~~l~~~---~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl 919 (1117)
.++||||+++|+|.+++... .....+++..++.++.|+++||+|||++ +|+||||||+||+++.++.+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl 188 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCV 188 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEE
Confidence 49999999999999998432 1234589999999999999999999999 9999999999999999999999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHH
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
+|||+++...... .........+++.|+|||.+.+..++.++||||||+++|||++ |+.||.... .......
T Consensus 189 ~Dfg~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--~~~~~~~--- 261 (313)
T 3brb_A 189 ADFGLSKKIYSGD--YYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ--NHEMYDY--- 261 (313)
T ss_dssp CSCSCC------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGGHHHH---
T ss_pred eecCcceeccccc--ccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC--HHHHHHH---
Confidence 9999998765422 1122334567889999999999999999999999999999999 899986532 1222222
Q ss_pred HHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 999 HLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 999 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
...... +..+...+..+.+++.. |++.+|++||++.++++.|+++.+.
T Consensus 262 ~~~~~~-------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~l~~~L~~l~~~ 309 (313)
T 3brb_A 262 LLHGHR-------LKQPEDCLDELYEIMYS------CWRTDPLDRPTFSVLRLQLEKLLES 309 (313)
T ss_dssp HHTTCC-------CCCBTTCCHHHHHHHHH------TTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHcCCC-------CCCCccccHHHHHHHHH------HcCCChhhCcCHHHHHHHHHHHHHh
Confidence 111111 11223334455555554 9999999999999999999988653
No 194
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.8e-37 Score=373.73 Aligned_cols=252 Identities=25% Similarity=0.398 Sum_probs=197.8
Q ss_pred eeeecCCeEEEEEEcC---CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecCCCC
Q 001238 783 IIGQGRSGIVYKVTLP---SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMPNGT 858 (1117)
Q Consensus 783 ~lg~G~fg~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~gs 858 (1117)
.||+|+||+||+|.+. ++..||||+++... ....++|.+|++++++++|||||++++++.. +..++||||+++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999753 46789999997643 3356789999999999999999999999876 56899999999999
Q ss_pred hhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCcccc
Q 001238 859 LGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSFSA 938 (1117)
Q Consensus 859 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~ 938 (1117)
|.+++.... ..+++.++..++.||++||+|||++ +|+||||||+|||++.++.+||+|||+++....... ....
T Consensus 422 L~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~-~~~~ 495 (613)
T 2ozo_A 422 LHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS-YYTA 495 (613)
T ss_dssp HHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC---------
T ss_pred HHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCc-eeee
Confidence 999997542 4489999999999999999999999 999999999999999999999999999987653321 1122
Q ss_pred CCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCC
Q 001238 939 NPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGH 1017 (1117)
Q Consensus 939 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1017 (1117)
.....+|+.|+|||++....++.++|||||||++|||++ |+.||... ....+...+. .... ...+..
T Consensus 496 ~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--~~~~~~~~i~----~~~~------~~~p~~ 563 (613)
T 2ozo_A 496 RSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM--KGPEVMAFIE----QGKR------MECPPE 563 (613)
T ss_dssp ------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--CSHHHHHHHH----TTCC------CCCCTT
T ss_pred ccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC--CHHHHHHHHH----cCCC------CCCCCc
Confidence 223346789999999999999999999999999999998 99999753 2222222222 1111 112233
Q ss_pred CchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1018 PDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1018 ~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
.+..+.+++.. ||+.+|++||++.+|++.|+.+...
T Consensus 564 ~~~~l~~li~~------cl~~dP~~RPs~~~l~~~L~~~~~~ 599 (613)
T 2ozo_A 564 CPPELYALMSD------CWIYKWEDRPDFLTVEQRMRACYYS 599 (613)
T ss_dssp CCHHHHHHHHH------TTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH------HcCCChhHCcCHHHHHHHHHHHHHH
Confidence 44455555554 9999999999999999999887543
No 195
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=4.5e-37 Score=349.11 Aligned_cols=264 Identities=24% Similarity=0.348 Sum_probs=205.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc------CCCcEEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL------PSGLTVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~------~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
.++|++.+.||+|+||.||+|.+ .+++.||||++... ......++.+|+.++++++||||+++++++.+.+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 45799999999999999999974 35779999999644 233455788999999999999999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCC----CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC---CCcceec
Q 001238 848 LLFYDYMPNGTLGMLLHDGEC----AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE---RYESCLA 920 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~---~~~~kl~ 920 (1117)
++||||+++|+|.+++..... ...+++.+++.++.|+++||+|||++ +|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEEC
Confidence 999999999999999986432 13488999999999999999999999 9999999999999994 4469999
Q ss_pred cccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHH
Q 001238 921 DFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDH 999 (1117)
Q Consensus 921 DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~ 999 (1117)
|||+++....... ........||+.|+|||++....++.++||||||+++|||++ |+.||... . ........
T Consensus 186 Dfg~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--~---~~~~~~~~ 258 (327)
T 2yfx_A 186 DFGMARDIYRASY--YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--S---NQEVLEFV 258 (327)
T ss_dssp CCHHHHHHHC--------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--C---HHHHHHHH
T ss_pred ccccccccccccc--cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc--C---HHHHHHHH
Confidence 9999986543221 122334568999999999998999999999999999999998 99999642 1 12222222
Q ss_pred HhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1000 LKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1000 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
.... . +..+...+..+.+++.. |++.||++||++.++++.++.+...+.
T Consensus 259 ~~~~-~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~~l~~~~~~~~ 307 (327)
T 2yfx_A 259 TSGG-R------MDPPKNCPGPVYRIMTQ------CWQHQPEDRPNFAIILERIEYCTQDPD 307 (327)
T ss_dssp HTTC-C------CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHCHH
T ss_pred hcCC-C------CCCCCCCCHHHHHHHHH------HhcCChhhCcCHHHHHHHHHHHhcCHH
Confidence 2211 1 11223334455555555 999999999999999999998876543
No 196
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=3.4e-37 Score=365.51 Aligned_cols=196 Identities=23% Similarity=0.308 Sum_probs=164.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeecC------C
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGANR------K 845 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~------~ 845 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||++... .....+++.+|+++++.++|||||++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 46899999999999999999974 46899999999754 333456788999999999999999999998655 3
Q ss_pred ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLA 925 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla 925 (1117)
..|+||||++++ +.+.+... +++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 141 ~~~lv~E~~~~~-l~~~~~~~-----l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a 211 (464)
T 3ttj_A 141 DVYLVMELMDAN-LCQVIQME-----LDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 211 (464)
T ss_dssp EEEEEEECCSEE-HHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred eEEEEEeCCCCC-HHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEee
Confidence 569999999765 55555432 88999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
+..... ......+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+
T Consensus 212 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g 265 (464)
T 3ttj_A 212 RTAGTS-----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPG 265 (464)
T ss_dssp -----C-----CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred eecCCC-----cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 876432 123456899999999999999999999999999999999999999965
No 197
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=4.4e-37 Score=348.24 Aligned_cols=248 Identities=21% Similarity=0.277 Sum_probs=178.6
Q ss_pred CCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccC-CCCcceEEeeeecCCceEEEEEecCCCC
Q 001238 781 GNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRNIVRLLGWGANRKTKLLFYDYMPNGT 858 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~~gs 858 (1117)
.+.||+|+||+||+|.. .+++.||||++... ....+.+|+++++.+. ||||+++++++.+.+..|+||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 57899999999999985 46899999999753 3467889999999997 9999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC---cceeccccccccccCCCCCc
Q 001238 859 LGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY---ESCLADFGLARLVEDDSGGS 935 (1117)
Q Consensus 859 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~---~~kl~DfGla~~~~~~~~~~ 935 (1117)
|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++ .+||+|||+++......
T Consensus 93 L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--- 163 (325)
T 3kn6_A 93 LFERIKKK---KHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN--- 163 (325)
T ss_dssp HHHHHHHC---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-----
T ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC---
Confidence 99999764 3489999999999999999999999 999999999999998765 89999999998654322
Q ss_pred cccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCC--ChhHHHHHHHHHhcCCCCccccCcc
Q 001238 936 FSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPD--GQHVIQWVRDHLKSKKDPVEVLDPK 1013 (1117)
Q Consensus 936 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1117)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+............. ..
T Consensus 164 -~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~ 238 (325)
T 3kn6_A 164 -QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFE----GE 238 (325)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCC----SH
T ss_pred -CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCC----cc
Confidence 2233457899999999999999999999999999999999999999753221 1222333333322221111 11
Q ss_pred cCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1014 LQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1014 l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.....+..+.++++. |++.||++||+++++++
T Consensus 239 ~~~~~s~~~~~li~~------~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 239 AWKNVSQEAKDLIQG------LLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp HHHTSCHHHHHHHHH------HHCCCTTTCCCTTTSTT
T ss_pred cccCCCHHHHHHHHH------HCCCChhHCCCHHHHhc
Confidence 111223345555554 99999999999998865
No 198
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.1e-37 Score=353.04 Aligned_cols=253 Identities=23% Similarity=0.288 Sum_probs=201.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEc----CCCcEEEEEEeecCC----ccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCc
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL----PSGLTVAVKRFRASD----KISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKT 846 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~ 846 (1117)
++|++.+.||+|+||+||+|+. .+|+.||||+++... ....+.+.+|+++++++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5788999999999999999986 478999999986432 23345678899999999 69999999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLAR 926 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~ 926 (1117)
.++||||+++|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred EEEEeecCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 99999999999999999764 2489999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhcc--CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYANM--TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ..............
T Consensus 208 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~-~~~~~~~~~~~~~~- 282 (355)
T 1vzo_A 208 EFVADE---TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NSQAEISRRILKSE- 282 (355)
T ss_dssp ECCGGG---GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CCHHHHHHHHHHCC-
T ss_pred ecccCC---CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc-chHHHHHHHHhccC-
Confidence 664321 122345679999999999875 45789999999999999999999999753222 22333333333322
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-----CHHHHHHH
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-----TMKDVAAL 1052 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-----s~~~v~~~ 1052 (1117)
+.++...+..+.+++.. |++.||++|| ++.++++.
T Consensus 283 -------~~~~~~~~~~~~~li~~------~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 283 -------PPYPQEMSALAKDLIQR------LLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp -------CCCCTTSCHHHHHHHHH------HTCSSGGGSTTSSTTTHHHHHTS
T ss_pred -------CCCCcccCHHHHHHHHH------HhhhCHHHhcCCCCCCHHHHHcC
Confidence 12233344455555555 9999999999 89998774
No 199
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.7e-36 Score=338.95 Aligned_cols=249 Identities=23% Similarity=0.319 Sum_probs=203.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 457889999999999999999864 58899999987542 23456788999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++++|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 94 ~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~ 167 (294)
T 2rku_A 94 LELCRRRSLLELHKRR---KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY 167 (294)
T ss_dssp EECCTTCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceeccc
Confidence 9999999999988754 3489999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
.. .......||+.|+|||++.+..++.++||||+|+++|||++|+.||... ...+.........
T Consensus 168 ~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~------- 231 (294)
T 2rku_A 168 DG----ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----CLKETYLRIKKNE------- 231 (294)
T ss_dssp TT----CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTC-------
T ss_pred Cc----cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHhhcc-------
Confidence 22 1233457899999999999889999999999999999999999999642 1222222222221
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
..++...+..+.++++. |++.||++||++.++++.
T Consensus 232 -~~~~~~~~~~~~~li~~------~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 232 -YSIPKHINPVAASLIQK------MLQTDPTARPTINELLND 266 (294)
T ss_dssp -CCCCTTSCHHHHHHHHH------HTCSSGGGSCCGGGGGGS
T ss_pred -CCCccccCHHHHHHHHH------HcccChhhCcCHHHHhhC
Confidence 11223334455555555 999999999999999874
No 200
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=9.6e-37 Score=346.15 Aligned_cols=256 Identities=20% Similarity=0.294 Sum_probs=200.2
Q ss_pred HHhccCCCCC-CeeeecCCeEEEEEEcC-CCcEEEEEEeecC--CccchHHHHHHHHHHhccC-CCCcceEEeeeecCCc
Q 001238 772 GDATRSLTAG-NIIGQGRSGIVYKVTLP-SGLTVAVKRFRAS--DKISTGAFSSEIATLSRIR-HRNIVRLLGWGANRKT 846 (1117)
Q Consensus 772 ~~~~~~~~~~-~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~ 846 (1117)
....++|.+. +.||+|+||+||+|... +|+.||+|+++.. .......+.+|++++++++ ||||+++++++.+.+.
T Consensus 24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~ 103 (327)
T 3lm5_A 24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSE 103 (327)
T ss_dssp HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCe
Confidence 3445567776 88999999999999754 6899999998753 2334567899999999994 6999999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC---CCcceecccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE---RYESCLADFG 923 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~---~~~~kl~DfG 923 (1117)
.++||||+++|+|.+++.... .+.+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||
T Consensus 104 ~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg 179 (327)
T 3lm5_A 104 IILILEYAAGGEIFSLCLPEL-AEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFG 179 (327)
T ss_dssp EEEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred EEEEEEecCCCcHHHHHHHhc-ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCc
Confidence 999999999999999986543 24589999999999999999999999 9999999999999998 7899999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK 1003 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~ 1003 (1117)
+++...... ......||+.|+|||++....++.++||||||+++|||++|+.||... .............
T Consensus 180 ~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~ 249 (327)
T 3lm5_A 180 MSRKIGHAC-----ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE-----DNQETYLNISQVN 249 (327)
T ss_dssp GCEEC--------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTC
T ss_pred cccccCCcc-----ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CchHHHHHHHhcc
Confidence 998765321 223457999999999999999999999999999999999999999642 1122222222222
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.... +......+..+.++++. |++.||++||+++++++
T Consensus 250 ~~~~----~~~~~~~~~~~~~li~~------~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 250 VDYS----EETFSSVSQLATDFIQS------LLVKNPEKRPTAEICLS 287 (327)
T ss_dssp CCCC----TTTTTTSCHHHHHHHHH------HSCSSGGGSCCHHHHTT
T ss_pred cccC----chhhcccCHHHHHHHHH------HcCCChhhCcCHHHHhC
Confidence 1111 11122233445555554 99999999999999876
No 201
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=3.2e-37 Score=341.79 Aligned_cols=253 Identities=27% Similarity=0.402 Sum_probs=198.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecC-CceEEEEEe
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANR-KTKLLFYDY 853 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-~~~~lv~e~ 853 (1117)
.++|++.+.||+|+||+||+|+. +|+.||||+++... ..+++.+|++++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 35788999999999999999987 58899999987543 456799999999999999999999986554 578999999
Q ss_pred cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCC
Q 001238 854 MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSG 933 (1117)
Q Consensus 854 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~ 933 (1117)
+++++|.+++.... ...+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 97 ~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~-- 170 (278)
T 1byg_A 97 MAKGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 170 (278)
T ss_dssp CTTEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred CCCCCHHHHHHhcc-cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc--
Confidence 99999999997642 12378999999999999999999999 9999999999999999999999999999865432
Q ss_pred CccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 934 GSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 934 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.....+++.|+|||++.+..++.++||||||+++|||++ |+.||.... ...... . ..... .+
T Consensus 171 -----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~--~~~~~~---~-~~~~~------~~ 233 (278)
T 1byg_A 171 -----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--LKDVVP---R-VEKGY------KM 233 (278)
T ss_dssp ----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC--GGGHHH---H-HTTTC------CC
T ss_pred -----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC--HHHHHH---H-HhcCC------CC
Confidence 123357889999999999999999999999999999998 999996532 122222 1 11111 12
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
..+...+..+.++++. |++.||++||++.++++.|+++...
T Consensus 234 ~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 234 DAPDGCPPAVYEVMKN------CWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHH------HhcCChhhCCCHHHHHHHHHHHHhh
Confidence 2233444556666655 9999999999999999999988654
No 202
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=336.80 Aligned_cols=252 Identities=21% Similarity=0.326 Sum_probs=197.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC----ccchHHHHHHHHHHhccCCCCcceEEeee--ecCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD----KISTGAFSSEIATLSRIRHRNIVRLLGWG--ANRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~H~niv~l~~~~--~~~~~~ 847 (1117)
.++|++.+.||+|+||.||+|.. .+++.||+|+++... ....+.+.+|++++++++||||+++++++ .+.+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 36799999999999999999986 468999999997532 23356789999999999999999999988 445678
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||++++ +.+++.... ...+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~-~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVP-EKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEECCSEE-HHHHHHHST-TCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEehhccCC-HHHHHHhCc-ccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 9999999877 666665533 23489999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCC--CCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCC
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTK--ISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKD 1005 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1117)
....... .......||+.|+|||++.+.. ++.++||||||+++|||++|+.||... ..............
T Consensus 159 ~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~i~~~~~- 230 (305)
T 2wtk_C 159 LHPFAAD--DTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD-----NIYKLFENIGKGSY- 230 (305)
T ss_dssp CCTTCSS--CEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS-----SHHHHHHHHHHCCC-
T ss_pred cCccccc--cccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHhcCCC-
Confidence 6532211 1223456899999999987644 377999999999999999999999642 22233332222211
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
.++...+..+.++++. |++.||++||++.++++.
T Consensus 231 -------~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 231 -------AIPGDCGPPLSDLLKG------MLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp -------CCCSSSCHHHHHHHHH------HTCSSTTTSCCHHHHHHS
T ss_pred -------CCCCccCHHHHHHHHH------HccCChhhCCCHHHHhcC
Confidence 1223344556666655 999999999999999874
No 203
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=354.47 Aligned_cols=254 Identities=13% Similarity=0.141 Sum_probs=202.5
Q ss_pred hccCCCCCCeeeecCCeEEEEEE------cCCCcEEEEEEeecCCccchHHHHHHHHHHhccC---CCCcceEEeeeecC
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVT------LPSGLTVAVKRFRASDKISTGAFSSEIATLSRIR---HRNIVRLLGWGANR 844 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~ 844 (1117)
..++|.+.+.||+|+||+||+|. ..+++.||||+++.. ...++.+|++++++++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 35679999999999999999993 456889999999754 3457888888888886 99999999999999
Q ss_pred CceEEEEEecCCCChhhhhcCCC--CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC---------
Q 001238 845 KTKLLFYDYMPNGTLGMLLHDGE--CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE--------- 913 (1117)
Q Consensus 845 ~~~~lv~e~~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~--------- 913 (1117)
+..++||||+++|+|.+++.... ....+++.+++.++.||++||+|||++ +||||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccc
Confidence 99999999999999999997421 224599999999999999999999999 9999999999999998
Q ss_pred --CCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChh
Q 001238 914 --RYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQH 991 (1117)
Q Consensus 914 --~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~ 991 (1117)
++.+||+|||+|+........ ......+||++|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-- 292 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKG--TIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE-- 292 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTT--EEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE--
T ss_pred cccCCEEEeeCchhhhhhccCCC--ceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc--
Confidence 899999999999865432211 23345679999999999999999999999999999999999999995421110
Q ss_pred HHHHHHHHHhcCCCCccccCcccCCC-CchhHHHHHHHHhHhhhccCCCCCCC-CCHHHHHHHHHhhhcC
Q 001238 992 VIQWVRDHLKSKKDPVEVLDPKLQGH-PDTQIQEMLQALGISLLCTSNRAEDR-PTMKDVAALLREIRQE 1059 (1117)
Q Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~i~~~C~~~~p~~R-Ps~~~v~~~L~~~~~~ 1059 (1117)
..+...+... ....+.+++.. |++.+|.+| |+++++.+.|+++...
T Consensus 293 ----------------~~~~~~~~~~~~~~~~~~~~~~------~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 293 ----------------CKPEGLFRRLPHLDMWNEFFHV------MLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp ----------------EEECSCCTTCSSHHHHHHHHHH------HHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred ----------------eeechhccccCcHHHHHHHHHH------HcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 0011111111 13344444444 999999998 6888998888877543
No 204
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-36 Score=347.56 Aligned_cols=262 Identities=23% Similarity=0.296 Sum_probs=194.0
Q ss_pred hHHHhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc-----chHHHHHHHHHHhccCCCCcceEEeeeec
Q 001238 770 SIGDATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI-----STGAFSSEIATLSRIRHRNIVRLLGWGAN 843 (1117)
Q Consensus 770 ~~~~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~H~niv~l~~~~~~ 843 (1117)
++....++|++.+.||+|+||.||+|... +|+.||||++...... ..+.+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 83 (346)
T 1ua2_A 4 DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH 83 (346)
T ss_dssp ---------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC
T ss_pred hhHHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee
Confidence 34455678999999999999999999864 5899999998753221 13468899999999999999999999999
Q ss_pred CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccc
Q 001238 844 RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFG 923 (1117)
Q Consensus 844 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfG 923 (1117)
.+..++||||+++ +|.+++.... ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 84 ~~~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg 157 (346)
T 1ua2_A 84 KSNISLVFDFMET-DLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFG 157 (346)
T ss_dssp TTCCEEEEECCSE-EHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCG
T ss_pred CCceEEEEEcCCC-CHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecc
Confidence 9999999999986 8888887643 3488899999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhc
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKS 1002 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~ 1002 (1117)
+++...... .......||+.|+|||++.+ ..++.++|||||||++|||++|.+||.+. .....+......
T Consensus 158 ~a~~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~-----~~~~~~~~i~~~ 228 (346)
T 1ua2_A 158 LAKSFGSPN----RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD-----SDLDQLTRIFET 228 (346)
T ss_dssp GGSTTTSCC----CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHH
T ss_pred cceeccCCc----ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHHH
Confidence 998765322 22345678999999999865 45899999999999999999999998642 112222222221
Q ss_pred CCCCccccCccc--------------------CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1003 KKDPVEVLDPKL--------------------QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1003 ~~~~~~~~~~~l--------------------~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
...+.....+.. ....+..+.++++ .|++.||++|||+.|+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~------~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 229 LGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQ------GLFLFNPCARITATQALKM 292 (346)
T ss_dssp HCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHH------HHHCSSTTTSCCHHHHHTS
T ss_pred cCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHH------HHhccChhhCCCHHHHhcC
Confidence 111111111110 0122234444444 4999999999999999874
No 205
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.7e-37 Score=355.69 Aligned_cols=203 Identities=30% Similarity=0.397 Sum_probs=162.9
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC--CccchHHHHHHHHHHhccC-CCCcceEEeeeecCC--ce
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIR-HRNIVRLLGWGANRK--TK 847 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~--~~ 847 (1117)
..++|++.+.||+|+||+||+|.. .+|+.||||++... ......++.+|+.+++++. ||||+++++++...+ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 456899999999999999999974 57899999998643 2334556789999999997 999999999987544 68
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
|+||||++ |+|..++... .+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 87 ~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 158 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRS 158 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence 99999997 6898888753 389999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCC-----------------ccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 928 VEDDSGG-----------------SFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 928 ~~~~~~~-----------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
....... .....+..+||+.|+|||++.+ ..++.++||||+||++|||++|++||.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~ 233 (388)
T 3oz6_A 159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPG 233 (388)
T ss_dssp SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCC
Confidence 6431110 1112345689999999999876 6789999999999999999999999965
No 206
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=9.3e-37 Score=337.59 Aligned_cols=253 Identities=24% Similarity=0.334 Sum_probs=202.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 356889999999999999999864 68999999997543 2335678999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||.++......
T Consensus 86 ~~~~~~L~~~l~~~---~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 159 (276)
T 2yex_A 86 YCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (276)
T ss_dssp CCTTEEGGGGSBTT---TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred ecCCCcHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence 99999999998754 3489999999999999999999999 99999999999999999999999999998664321
Q ss_pred CCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
.........||+.|+|||++....+ +.++||||||+++|||++|+.||............+. ... ...
T Consensus 160 --~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~----~~~-~~~---- 228 (276)
T 2yex_A 160 --RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWK----EKK-TYL---- 228 (276)
T ss_dssp --EECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHH----TTC-TTS----
T ss_pred --chhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhh----hcc-ccc----
Confidence 1122345678999999999987665 7899999999999999999999976433322222221 111 110
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
+. ....+..+.++++. |++.||++||++.++++
T Consensus 229 ~~-~~~~~~~~~~li~~------~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 229 NP-WKKIDSAPLALLHK------ILVENPSARITIPDIKK 261 (276)
T ss_dssp TT-GGGSCHHHHHHHHH------HSCSSTTTSCCHHHHTT
T ss_pred Cc-hhhcCHHHHHHHHH------HCCCCchhCCCHHHHhc
Confidence 00 11223445555554 99999999999999876
No 207
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=2.6e-36 Score=338.92 Aligned_cols=250 Identities=26% Similarity=0.391 Sum_probs=205.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.+.|++.+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 35688899999999999999974 568999999997553 3345789999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 101 ~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 173 (303)
T 3a7i_A 101 YLGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ 173 (303)
T ss_dssp CCTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB
T ss_pred eCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccc
Confidence 99999999998753 389999999999999999999999 99999999999999999999999999998765422
Q ss_pred CCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.......||+.|+|||++....++.++||||||+++|||++|+.||.... ............ .+
T Consensus 174 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~-------~~ 237 (303)
T 3a7i_A 174 ----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH-----PMKVLFLIPKNN-------PP 237 (303)
T ss_dssp ----CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-----HHHHHHHHHHSC-------CC
T ss_pred ----cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC-----HHHHHHHhhcCC-------CC
Confidence 12334578999999999999999999999999999999999999996421 111121111111 12
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHH
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALL 1053 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L 1053 (1117)
.+....+..+.+++.. |++.+|++||++.++++..
T Consensus 238 ~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 238 TLEGNYSKPLKEFVEA------CLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp CCCSSCCHHHHHHHHH------HCCSSGGGSCCHHHHTTCH
T ss_pred CCccccCHHHHHHHHH------HcCCChhhCcCHHHHhhCh
Confidence 2333445556666655 9999999999999998743
No 208
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=341.67 Aligned_cols=199 Identities=26% Similarity=0.354 Sum_probs=169.1
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
++|++.+.||+|+||+||+|... +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 47888999999999999999864 589999999865432 224568899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~~~~l~~~~~~~---~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 156 (311)
T 4agu_A 83 YCDHTVLHELDRYQ---RGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS 156 (311)
T ss_dssp CCSEEHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred eCCCchHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc
Confidence 99999999988754 3389999999999999999999999 99999999999999999999999999998765322
Q ss_pred CCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
.......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||..
T Consensus 157 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 205 (311)
T 4agu_A 157 ----DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPG 205 (311)
T ss_dssp -------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred ----cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCC
Confidence 12234578999999999875 6789999999999999999999999965
No 209
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=6.4e-37 Score=347.89 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=164.6
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc--cchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK--ISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
...++|++.+.||+|+||+||+|.. .+++.||||+++.... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 3456899999999999999999974 5789999999975432 224567899999999999999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc-----CCCcceeccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG-----ERYESCLADFGL 924 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~-----~~~~~kl~DfGl 924 (1117)
||||++ |+|.+++.... .+++..+..++.|+++||+|||++ +|+||||||+||+++ +++.+||+|||+
T Consensus 111 v~e~~~-~~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEECCS-EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEecCC-CCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 999997 59999887653 389999999999999999999999 999999999999994 455699999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||..
T Consensus 184 a~~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 240 (329)
T 3gbz_A 184 ARAFGIPI----RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPG 240 (329)
T ss_dssp HHHHC---------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred ccccCCcc----cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence 98764321 223345789999999998764 589999999999999999999999964
No 210
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=2.4e-36 Score=335.85 Aligned_cols=245 Identities=24% Similarity=0.382 Sum_probs=202.3
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 46888999999999999999854 68899999986431 223467899999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++|+|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 94 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 94 EFAPRGELYKELQKH---GRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp CCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 999999999998764 2489999999999999999999999 9999999999999999999999999999765432
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
......||+.|+|||++.+..++.++||||||+++|||++|+.||... .............
T Consensus 168 ------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~~~~~~-------- 228 (284)
T 2vgo_A 168 ------RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP-----SHTETHRRIVNVD-------- 228 (284)
T ss_dssp ------CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-----SHHHHHHHHHTTC--------
T ss_pred ------ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC-----CHhHHHHHHhccc--------
Confidence 123457899999999999999999999999999999999999999642 1122222222211
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..++...+..+.+++.. |++.||++||++.++++
T Consensus 229 ~~~~~~~~~~~~~li~~------~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 229 LKFPPFLSDGSKDLISK------LLRYHPPQRLPLKGVME 262 (284)
T ss_dssp CCCCTTSCHHHHHHHHH------HSCSSGGGSCCHHHHHT
T ss_pred cCCCCcCCHHHHHHHHH------HhhcCHhhCCCHHHHhh
Confidence 12233344555666555 99999999999999987
No 211
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=3.2e-36 Score=342.10 Aligned_cols=260 Identities=28% Similarity=0.458 Sum_probs=204.4
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcE--EEEEEeecC-CccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLT--VAVKRFRAS-DKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~--vavK~~~~~-~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv 850 (1117)
++|++.+.||+|+||.||+|+.. +++. ||+|+++.. .....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 46888999999999999999753 4654 499988753 233456789999999999 899999999999999999999
Q ss_pred EEecCCCChhhhhcCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcc
Q 001238 851 YDYMPNGTLGMLLHDGE-------------CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYES 917 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~ 917 (1117)
|||+++|+|.+++.... ....+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeE
Confidence 99999999999997643 123589999999999999999999999 99999999999999999999
Q ss_pred eeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHH
Q 001238 918 CLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWV 996 (1117)
Q Consensus 918 kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~ 996 (1117)
||+|||+++..... .......+++.|+|||++....++.++||||||+++|||++ |+.||... ...+..
T Consensus 182 kL~Dfg~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~-----~~~~~~ 251 (327)
T 1fvr_A 182 KIADFGLSRGQEVY-----VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM-----TCAELY 251 (327)
T ss_dssp EECCTTCEESSCEE-----CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHH
T ss_pred EEcccCcCcccccc-----ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCC-----cHHHHH
Confidence 99999999754321 12233467889999999998899999999999999999998 99999642 112222
Q ss_pred HHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 997 RDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 997 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
.. +..... ...+...+..+.+++.. |++.+|++||++.++++.|+++..+..
T Consensus 252 ~~-~~~~~~------~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~~L~~~~~~~~ 303 (327)
T 1fvr_A 252 EK-LPQGYR------LEKPLNCDDEVYDLMRQ------CWREKPYERPSFAQILVSLNRMLEERK 303 (327)
T ss_dssp HH-GGGTCC------CCCCTTBCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred HH-hhcCCC------CCCCCCCCHHHHHHHHH------HccCChhhCcCHHHHHHHHHHHHHhhc
Confidence 22 222111 11222334455555555 999999999999999999998876543
No 212
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1.5e-36 Score=348.35 Aligned_cols=266 Identities=22% Similarity=0.257 Sum_probs=198.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeec--------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGAN-------- 843 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~-------- 843 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 45789999999999999999986 578999999986543 2234578899999999999999999999876
Q ss_pred CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccc
Q 001238 844 RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFG 923 (1117)
Q Consensus 844 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfG 923 (1117)
.+..++||||+++ ++.+.+.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVL--VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CceEEEEEeccCC-CHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence 3468999999975 6766665542 3489999999999999999999999 99999999999999999999999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhc
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKS 1002 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~ 1002 (1117)
+++.................||+.|+|||++.+ ..++.++|||||||++|||++|+.||... ........+......
T Consensus 170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~i~~~~~~ 247 (351)
T 3mi9_A 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN--TEQHQLALISQLCGS 247 (351)
T ss_dssp TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS--SHHHHHHHHHHHHCC
T ss_pred hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHhCC
Confidence 998775433333334455688999999998875 56899999999999999999999999752 122222222222211
Q ss_pred CCCCccccCcccC------------CCCchhHHHH------HHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1003 KKDPVEVLDPKLQ------------GHPDTQIQEM------LQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1003 ~~~~~~~~~~~l~------------~~~~~~~~~~------l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. .....+... .........+ .....++..|++.||++||+++|+++
T Consensus 248 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 248 I---TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp C---CTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred C---ChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 1 111111110 0000000110 01234556699999999999999987
No 213
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.5e-36 Score=353.61 Aligned_cols=251 Identities=20% Similarity=0.272 Sum_probs=189.0
Q ss_pred ccCCCCC-CeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhc-cCCCCcceEEeeeec----CCce
Q 001238 775 TRSLTAG-NIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSR-IRHRNIVRLLGWGAN----RKTK 847 (1117)
Q Consensus 775 ~~~~~~~-~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~H~niv~l~~~~~~----~~~~ 847 (1117)
.++|.+. +.||+|+||+||+|.. .+|+.||||+++. ...+.+|++++.+ .+||||+++++++.. .+..
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~ 134 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence 3456665 6899999999999975 4689999999863 2467889998754 489999999998765 5678
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC---CCcceeccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE---RYESCLADFGL 924 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~---~~~~kl~DfGl 924 (1117)
|+||||+++|+|.+++..... ..+++.++..++.||++||+|||++ +|+||||||+||+++. ++.+||+|||+
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~ 210 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGF 210 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEEeCCCCcHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEeccc
Confidence 999999999999999987532 3489999999999999999999999 9999999999999997 78999999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCC--hhHHHHHHHHHhc
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDG--QHVIQWVRDHLKS 1002 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~--~~~~~~~~~~~~~ 1002 (1117)
++..... ......+||+.|+|||++....++.++|||||||++|||++|+.||....... ......+. ..
T Consensus 211 a~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~---~~ 282 (400)
T 1nxk_A 211 AKETTSH-----NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIR---MG 282 (400)
T ss_dssp CEECC----------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHH---HT
T ss_pred ccccCCC-----CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHH---cC
Confidence 9865432 12345678999999999999999999999999999999999999997543221 11222221 11
Q ss_pred CCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1003 KKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1003 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
...... +. ....+..+.++++ .|++.||++||++.++++.
T Consensus 283 ~~~~~~---~~-~~~~s~~~~~li~------~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 283 QYEFPN---PE-WSEVSEEVKMLIR------NLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp CCCCCT---TT-TTTSCHHHHHHHH------TTSCSSGGGSCCHHHHHHS
T ss_pred cccCCC---cc-cccCCHHHHHHHH------HHCCCChhHCcCHHHHhcC
Confidence 111110 11 1223344555554 4999999999999999884
No 214
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.4e-36 Score=350.14 Aligned_cols=198 Identities=24% Similarity=0.279 Sum_probs=174.8
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccC-----CCCcceEEeeeecCCce
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-----HRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----H~niv~l~~~~~~~~~~ 847 (1117)
..++|++.++||+|+||+||+|.. .+++.||||+++.. ......+..|++++++++ ||||+++++++...+..
T Consensus 33 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~ 111 (360)
T 3llt_A 33 LNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHM 111 (360)
T ss_dssp ETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEE
T ss_pred ecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCee
Confidence 356899999999999999999985 56899999999743 233456788999999996 99999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC--------------
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE-------------- 913 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~-------------- 913 (1117)
++||||+ +++|.+++..... ..+++.++..++.||+.||+|||++ +|+||||||+||+++.
T Consensus 112 ~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~~~~~~ 186 (360)
T 3llt_A 112 CLIFEPL-GPSLYEIITRNNY-NGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLITVRRVT 186 (360)
T ss_dssp EEEECCC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEEEECTT
T ss_pred EEEEcCC-CCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccchhccc
Confidence 9999999 9999999987543 3489999999999999999999999 9999999999999975
Q ss_pred -----------CCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCC
Q 001238 914 -----------RYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPV 982 (1117)
Q Consensus 914 -----------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~ 982 (1117)
++.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||
T Consensus 187 ~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf 259 (360)
T 3llt_A 187 DGKKIQIYRTKSTGIKLIDFGCATFKSDY-------HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLF 259 (360)
T ss_dssp TCCEEEEEEESCCCEEECCCTTCEETTSC-------CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred ccccccccccCCCCEEEEeccCceecCCC-------CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCC
Confidence 789999999999865432 23457899999999999999999999999999999999999999
Q ss_pred CC
Q 001238 983 DA 984 (1117)
Q Consensus 983 ~~ 984 (1117)
..
T Consensus 260 ~~ 261 (360)
T 3llt_A 260 RT 261 (360)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 215
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=9.8e-37 Score=342.55 Aligned_cols=251 Identities=21% Similarity=0.327 Sum_probs=201.0
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
..++|.+.+.||+|+||+||+|+.. +|+.||+|+++.......+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 3457889999999999999999854 789999999987655455678999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---cCCCcceecccccccccc
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL---GERYESCLADFGLARLVE 929 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill---~~~~~~kl~DfGla~~~~ 929 (1117)
|+++++|.+++... +.+++.++..++.|++.||+|||++ +|+||||||+||++ ++++.+||+|||+++...
T Consensus 87 ~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 87 LVSGGELFDRILER---GVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp CCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred cCCCccHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 99999999988654 3489999999999999999999999 99999999999999 778999999999997643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
.. ......||+.|+|||++.+..++.++||||+|+++|||++|+.||... ................
T Consensus 161 ~~------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----~~~~~~~~i~~~~~~~--- 226 (304)
T 2jam_A 161 NG------IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE-----TESKLFEKIKEGYYEF--- 226 (304)
T ss_dssp CB------TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHCCCCC---
T ss_pred CC------ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHcCCCCC---
Confidence 21 223456899999999999899999999999999999999999999642 1122222222222111
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
........+..+.+++.. |++.||++||++.++++
T Consensus 227 -~~~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 227 -ESPFWDDISESAKDFICH------LLEKDPNERYTCEKALS 261 (304)
T ss_dssp -CTTTTTTSCHHHHHHHHH------HHCSSTTTSCCHHHHHT
T ss_pred -CccccccCCHHHHHHHHH------HcCCChhHCcCHHHHhc
Confidence 111222334455555555 99999999999999987
No 216
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=348.31 Aligned_cols=272 Identities=26% Similarity=0.351 Sum_probs=194.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHH--HhccCCCCcceEEeeee-----cCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIAT--LSRIRHRNIVRLLGWGA-----NRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~H~niv~l~~~~~-----~~~~~ 847 (1117)
.++|++.+.||+|+||+||+|+. +++.||||++.... ...+..|.++ +..++||||+++++++. .....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 35788999999999999999987 68999999997542 3344445444 55589999999997543 23356
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC------CCceeeeccccCeEEEcCCCcceecc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDC------VPAILHRDVKSHNILLGERYESCLAD 921 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------~~~ivHrDlkp~Nill~~~~~~kl~D 921 (1117)
++||||+++|+|.+++.... .++..+.+++.|+++||+|||+++ .++|+||||||+||+++.++.+||+|
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~D 163 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISD 163 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECC
T ss_pred EEEEecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEee
Confidence 89999999999999997643 588999999999999999999873 23899999999999999999999999
Q ss_pred ccccccccCCCCC----ccccCCccccccccCChhhhcc-------CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCCh
Q 001238 922 FGLARLVEDDSGG----SFSANPQFAGSYGYIAPEYANM-------TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQ 990 (1117)
Q Consensus 922 fGla~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~ 990 (1117)
||+++........ .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||........
T Consensus 164 FG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~ 243 (336)
T 3g2f_A 164 FGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPE 243 (336)
T ss_dssp CTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCC
T ss_pred ccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhH
Confidence 9999876543211 1122335579999999999876 4667899999999999999999777633211100
Q ss_pred ------------hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 991 ------------HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 991 ------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
.............. ..+.++...............++..||+.||++|||++|+++.|+++..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~ 318 (336)
T 3g2f_A 244 YQMAFQTEVGNHPTFEDMQVLVSREK-----QRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMM 318 (336)
T ss_dssp CCCTTHHHHCSSCCHHHHHHHHTTSC-----CCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHhhhcccc-----cCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHH
Confidence 00111111111111 1112222111110011112234556999999999999999999999875
Q ss_pred C
Q 001238 1059 E 1059 (1117)
Q Consensus 1059 ~ 1059 (1117)
.
T Consensus 319 ~ 319 (336)
T 3g2f_A 319 I 319 (336)
T ss_dssp C
T ss_pred H
Confidence 4
No 217
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=5.1e-37 Score=340.30 Aligned_cols=255 Identities=23% Similarity=0.353 Sum_probs=200.8
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeee--cCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGA--NRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~--~~~~~~l 849 (1117)
.++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|++++++++||||+++++++. .....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 357888999999999999999854 68999999997543 233567899999999999999999999874 4567899
Q ss_pred EEEecCCCChhhhhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHhccCCCc-----eeeeccccCeEEEcCCCcceecccc
Q 001238 850 FYDYMPNGTLGMLLHDGE-CAGLLEWDTRFKIALGVAEGLSYLHHDCVPA-----ILHRDVKSHNILLGERYESCLADFG 923 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~-----ivHrDlkp~Nill~~~~~~kl~DfG 923 (1117)
||||+++++|.+++.... ....+++..++.++.|++.||+|||++ + |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 999999999999987532 123489999999999999999999998 7 9999999999999999999999999
Q ss_pred ccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC
Q 001238 924 LARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK 1003 (1117)
Q Consensus 924 la~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~ 1003 (1117)
+++...... .......||+.|+|||++....++.++||||||+++|||++|+.||... . ............
T Consensus 162 ~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~--~---~~~~~~~i~~~~ 232 (279)
T 2w5a_A 162 LARILNHDT----SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF--S---QKELAGKIREGK 232 (279)
T ss_dssp HHHHC---C----HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCS--S---HHHHHHHHHHTC
T ss_pred hheeecccc----ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCccc--C---HHHHHHHHhhcc
Confidence 998764321 1122457899999999999889999999999999999999999999642 1 122222222221
Q ss_pred CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHH
Q 001238 1004 KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLR 1054 (1117)
Q Consensus 1004 ~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~ 1054 (1117)
. +.++...+..+.+++.. |++.||++||++.++++.+.
T Consensus 233 ~-------~~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 233 F-------RRIPYRYSDELNEIITR------MLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp C-------CCCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHTSTT
T ss_pred c-------ccCCcccCHHHHHHHHH------HcCCCcccCCCHHHHHhChh
Confidence 1 12233344556666655 99999999999999988553
No 218
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=7.8e-37 Score=358.45 Aligned_cols=253 Identities=19% Similarity=0.261 Sum_probs=190.1
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--------ccchHHHHHHHHHHhccCCCCcceEEeeeec
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--------KISTGAFSSEIATLSRIRHRNIVRLLGWGAN 843 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~ 843 (1117)
...++|.+.+.||+|+||+||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 3456899999999999999999974 568999999987532 1122358899999999999999999998754
Q ss_pred CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC---cceec
Q 001238 844 RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY---ESCLA 920 (1117)
Q Consensus 844 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~---~~kl~ 920 (1117)
+..++||||+++|+|.+++... +.+++.++..++.|+++||+|||++ +|+||||||+||+++.++ .+||+
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~ 284 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT 284 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred -CceEEEEEcCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEe
Confidence 5579999999999999988764 3489999999999999999999999 999999999999997544 59999
Q ss_pred cccccccccCCCCCccccCCccccccccCChhhhc---cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHH
Q 001238 921 DFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYAN---MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVR 997 (1117)
Q Consensus 921 DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~ 997 (1117)
|||+++..... .......||+.|+|||++. ...++.++|||||||++|||++|+.||...... ......+.
T Consensus 285 DFG~a~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~-~~~~~~i~ 358 (419)
T 3i6u_A 285 DFGHSKILGET-----SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-VSLKDQIT 358 (419)
T ss_dssp CSSTTTSCC----------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS-CCHHHHHH
T ss_pred ecccceecCCC-----ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch-HHHHHHHh
Confidence 99999876432 1234567999999999875 367889999999999999999999999753222 22222221
Q ss_pred HHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 998 DHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 998 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
...... .+......+..+.++++. |++.||++||++.++++
T Consensus 359 ---~~~~~~----~~~~~~~~~~~~~~li~~------~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 359 ---SGKYNF----IPEVWAEVSEKALDLVKK------LLVVDPKARFTTEEALR 399 (419)
T ss_dssp ---TTCCCC----CHHHHTTSCHHHHHHHHH------HSCSSTTTSCCHHHHHH
T ss_pred ---cCCCCC----CchhhcccCHHHHHHHHH------HccCChhHCcCHHHHhC
Confidence 111111 111222333445555554 99999999999999987
No 219
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2e-36 Score=371.72 Aligned_cols=250 Identities=25% Similarity=0.380 Sum_probs=195.9
Q ss_pred CeeeecCCeEEEEEEc---CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEEecCC
Q 001238 782 NIIGQGRSGIVYKVTL---PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYDYMPN 856 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e~~~~ 856 (1117)
+.||+|+||+||+|.+ ..++.||||+++... ....+++.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 4799999999999954 346889999997542 2335789999999999999999999999864 568899999999
Q ss_pred CChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCcc
Q 001238 857 GTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSF 936 (1117)
Q Consensus 857 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 936 (1117)
|+|.+++... +.+++.++..++.||++||+|||++ +||||||||+||+++.++.+||+|||+++....... ..
T Consensus 454 g~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~-~~ 526 (635)
T 4fl3_A 454 GPLNKYLQQN---RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN-YY 526 (635)
T ss_dssp EEHHHHHHHC---TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred CCHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcc-cc
Confidence 9999999754 3489999999999999999999999 999999999999999999999999999987754321 12
Q ss_pred ccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccC
Q 001238 937 SANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQ 1015 (1117)
Q Consensus 937 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1015 (1117)
.......+|+.|+|||++....++.++|||||||++|||++ |+.||... ....+.. . +..... ...+
T Consensus 527 ~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--~~~~~~~---~-i~~~~~------~~~p 594 (635)
T 4fl3_A 527 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--KGSEVTA---M-LEKGER------MGCP 594 (635)
T ss_dssp --------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC--CHHHHHH---H-HHTTCC------CCCC
T ss_pred ccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--CHHHHHH---H-HHcCCC------CCCC
Confidence 22334467889999999999999999999999999999998 99999652 1112222 2 222211 1122
Q ss_pred CCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhh
Q 001238 1016 GHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIR 1057 (1117)
Q Consensus 1016 ~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~ 1057 (1117)
...+..+.+++.. ||+.||++||++.+|++.|+++.
T Consensus 595 ~~~~~~l~~li~~------cl~~dP~~RPs~~~l~~~L~~~~ 630 (635)
T 4fl3_A 595 AGCPREMYDLMNL------CWTYDVENRPGFAAVELRLRNYY 630 (635)
T ss_dssp TTCCHHHHHHHHH------HTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------HcCCCHhHCcCHHHHHHHHHHHH
Confidence 3344455555554 99999999999999999998764
No 220
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-36 Score=350.09 Aligned_cols=251 Identities=24% Similarity=0.325 Sum_probs=191.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCC------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRK------ 845 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~------ 845 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ....+++.+|+++++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 46799999999999999999975 569999999986532 223467889999999999999999999987653
Q ss_pred ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLA 925 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla 925 (1117)
..|+||||+ +++|.+++... .+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 175 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLA 175 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecc
Confidence 459999999 88999998763 389999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
+.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.. ....+........
T Consensus 176 ~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~l~~i~~~~g 243 (367)
T 1cm8_A 176 RQADS-------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSD-----HLDQLKEIMKVTG 243 (367)
T ss_dssp EECCS-------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHHHHHHC
T ss_pred ccccc-------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHHHHhcC
Confidence 87543 2234578999999999876 789999999999999999999999996521 1122222211111
Q ss_pred CCccc-----------------------cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1005 DPVEV-----------------------LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1005 ~~~~~-----------------------~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.+... -...+....+....++++. |++.||++|||+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~------mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 244 TPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEK------MLVLDAEQRVTAGEALA 307 (367)
T ss_dssp CCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHH------HSCSSTTTSCCHHHHHH
T ss_pred CCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHH------HccCChhHCCCHHHHhc
Confidence 11100 0011112233445555554 99999999999999987
No 221
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=3.6e-36 Score=337.06 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=196.9
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
++|++.+.||+|+||.||+|... +|+.||||+++... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 46888999999999999999864 68999999987542 2234678899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|++ ++|.+++..... ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~-~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASAL-TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 997 699998876532 3488999999999999999999999 99999999999999999999999999998764321
Q ss_pred CCccccCCccccccccCChhhhccCC-CCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc-
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTK-ISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL- 1010 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1010 (1117)
.......+|+.|+|||++.+.. ++.++||||||+++|||++|+.||.... .........+....+.+..
T Consensus 158 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2r3i_A 158 ----RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDS-----EIDQLFRIFRTLGTPDEVVW 228 (299)
T ss_dssp ----BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHHHHHHHCCCCTTTS
T ss_pred ----cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCcc-----HHHHHHHHHHHhCCCchhhh
Confidence 1233457899999999987755 7899999999999999999999996521 1122222222111111111
Q ss_pred ---------CcccC-----------CCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1011 ---------DPKLQ-----------GHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1011 ---------~~~l~-----------~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.+.++ ...+....++++ .|++.||++||++.++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~------~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 229 PGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLS------QMLHYDPNKRISAKAALA 283 (299)
T ss_dssp TTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHH------HHTCSSTTTSCCHHHHHT
T ss_pred hHhhcCcccchhhhcccchhhHhhCCCCCHHHHHHHH------HhcCcCcccCCCHHHHhc
Confidence 11111 112334444444 499999999999999987
No 222
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=6.9e-37 Score=343.60 Aligned_cols=265 Identities=25% Similarity=0.375 Sum_probs=185.9
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
...++|++.+.||+|+||.||+|... +++.||||++.... ....+++.+|++++++++||||+++++++...+..++|
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 34568999999999999999999854 68999999986542 33456788999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCC-----CCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccc
Q 001238 851 YDYMPNGTLGMLLHDG-----ECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLA 925 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla 925 (1117)
|||+++++|.+++... ...+.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 9999999999988641 1234589999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCC-ccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC
Q 001238 926 RLVEDDSGG-SFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK 1003 (1117)
Q Consensus 926 ~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~ 1003 (1117)
+........ .........||+.|+|||++.. ..++.++||||||+++|||++|+.||...... . .........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~---~~~~~~~~~ 243 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM--K---VLMLTLQND 243 (303)
T ss_dssp HHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGG--G---HHHHHHTSS
T ss_pred heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchh--h---HHHHHhccC
Confidence 876532211 1112334579999999999875 56899999999999999999999999753221 1 111122221
Q ss_pred CCC--ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1004 KDP--VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1004 ~~~--~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
... ....++......+..+.+++.. |++.||++||++.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 244 PPSLETGVQDKEMLKKYGKSFRKMISL------CLQKDPEKRPTAAELLR 287 (303)
T ss_dssp CCCTTC-----CCCCCCCHHHHHHHHH------HCCSSGGGSCCHHHHHT
T ss_pred CCccccccccchhhhhhhHHHHHHHHH------HccCChhhCcCHHHHhh
Confidence 111 1112223333444555555555 99999999999999986
No 223
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=2.5e-36 Score=334.11 Aligned_cols=247 Identities=24% Similarity=0.347 Sum_probs=194.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 57889999999999999999865 78999999987532 234567899999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++++|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 91 e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 91 EYVSGGELFDYICKH---GRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp ECCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred eccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 999999999999764 2489999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCcccc
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVL 1010 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1117)
. ......||+.|+|||.+.+..+ +.++||||||+++|||++|+.||... ..............
T Consensus 165 ~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~------ 228 (276)
T 2h6d_A 165 E-----FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE-----HVPTLFKKIRGGVF------ 228 (276)
T ss_dssp -----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCC------
T ss_pred c-----ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC-----cHHHHHHHhhcCcc------
Confidence 1 1234578999999999987665 68999999999999999999999642 12222222222211
Q ss_pred CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1011 DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1011 ~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
.++...+..+.+++.. |++.||++||++.++++.
T Consensus 229 --~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 229 --YIPEYLNRSVATLLMH------MLQVDPLKRATIKDIREH 262 (276)
T ss_dssp --CCCTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHHS
T ss_pred --cCchhcCHHHHHHHHH------HccCChhhCCCHHHHHhC
Confidence 1222334455555555 999999999999999873
No 224
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.1e-36 Score=339.89 Aligned_cols=261 Identities=26% Similarity=0.398 Sum_probs=196.9
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC--CCc--EEEEEEeecC---CccchHHHHHHHHHHhccCCCCcceEEeeeecCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP--SGL--TVAVKRFRAS---DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~--~~~--~vavK~~~~~---~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~ 847 (1117)
.++|++.+.||+|+||+||+|.+. +++ .||||+++.. .....+++.+|++++++++||||+++++++.... .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 357889999999999999999742 333 6899998754 2334567899999999999999999999988755 8
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||+++++|.+++.... +.+++.++.+++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 170 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRA 170 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred eeeEecccCCCHHHHHHhcc--CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccc
Confidence 89999999999999987642 3489999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCC
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDP 1006 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1117)
...... .........+|+.|+|||++....++.++||||||+++|||++ |+.||... ...+.+..........
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-----~~~~~~~~~~~~~~~~ 244 (291)
T 1u46_A 171 LPQNDD-HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-----NGSQILHKIDKEGERL 244 (291)
T ss_dssp CCC-CC-EEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTSCCCC
T ss_pred cccccc-chhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC-----CHHHHHHHHHccCCCC
Confidence 654321 1222334567889999999998899999999999999999999 99999642 1222333322222111
Q ss_pred ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcC
Q 001238 1007 VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQE 1059 (1117)
Q Consensus 1007 ~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~ 1059 (1117)
......+..+.+++.. |++.||++||++.++++.|+++...
T Consensus 245 ------~~~~~~~~~l~~li~~------~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 245 ------PRPEDCPQDIYNVMVQ------CWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp ------CCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred ------CCCcCcCHHHHHHHHH------HccCCcccCcCHHHHHHHHHHhCcc
Confidence 1122334455555554 9999999999999999999987643
No 225
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=4e-36 Score=346.07 Aligned_cols=254 Identities=23% Similarity=0.369 Sum_probs=202.4
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc--------chHHHHHHHHHHhcc-CCCCcceEEeee
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI--------STGAFSSEIATLSRI-RHRNIVRLLGWG 841 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l-~H~niv~l~~~~ 841 (1117)
....++|++.+.||+|+||.||+|... +|+.||||+++..... ..+.+.+|+.+++++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 345567999999999999999999864 7999999999764321 134678899999999 799999999999
Q ss_pred ecCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecc
Q 001238 842 ANRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLAD 921 (1117)
Q Consensus 842 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~D 921 (1117)
...+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 170 ~~~~~~~lv~e~~~g~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~D 243 (365)
T 2y7j_A 170 ESSSFMFLVFDLMRKGELFDYLTEK---VALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSD 243 (365)
T ss_dssp EBSSEEEEEECCCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred eeCCEEEEEEEeCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEe
Confidence 9999999999999999999998754 3489999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCccccCCccccccccCChhhhcc------CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHH
Q 001238 922 FGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM------TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQW 995 (1117)
Q Consensus 922 fGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~ 995 (1117)
||++....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||... .....
T Consensus 244 fG~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~-----~~~~~ 313 (365)
T 2y7j_A 244 FGFSCHLEPGE-----KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR-----RQILM 313 (365)
T ss_dssp CTTCEECCTTC-----CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----SHHHH
T ss_pred cCcccccCCCc-----ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC-----CHHHH
Confidence 99998765422 2234679999999998863 35889999999999999999999999642 11222
Q ss_pred HHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 996 VRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
............. +. ....+..+.++++. |++.||++||++.++++
T Consensus 314 ~~~i~~~~~~~~~---~~-~~~~~~~~~~li~~------~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 314 LRMIMEGQYQFSS---PE-WDDRSSTVKDLISR------LLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HHHHHHTCCCCCH---HH-HSSSCHHHHHHHHH------HSCSSTTTSCCHHHHHH
T ss_pred HHHHHhCCCCCCC---cc-cccCCHHHHHHHHH------HcCCChhHCcCHHHHhc
Confidence 2222222211111 11 11223345555554 99999999999999986
No 226
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.7e-36 Score=355.72 Aligned_cols=256 Identities=24% Similarity=0.297 Sum_probs=187.3
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecC----C--ceE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANR----K--TKL 848 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~----~--~~~ 848 (1117)
.+|++.+.||+|+||+||+|++. +|+.||||++..... .+.+|++++++++|||||++++++... + ..+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 36888899999999999999864 689999999875432 345799999999999999999987432 2 357
Q ss_pred EEEEecCCCChhhhhcC-CCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC-Ccceeccccccc
Q 001238 849 LFYDYMPNGTLGMLLHD-GECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER-YESCLADFGLAR 926 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~-~~~kl~DfGla~ 926 (1117)
+||||+++ ++.+.+.. ......+++..+..++.||++||+|||++ +|+||||||+|||++.+ +.+||+|||+++
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 89999986 55555432 11224589999999999999999999999 99999999999999965 568999999998
Q ss_pred cccCCCCCccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHH------
Q 001238 927 LVEDDSGGSFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDH------ 999 (1117)
Q Consensus 927 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~------ 999 (1117)
...... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||.+... ...+.+.+...
T Consensus 206 ~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~ 279 (420)
T 1j1b_A 206 QLVRGE-----PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTRE 279 (420)
T ss_dssp ECCTTC-----CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHH
T ss_pred hcccCC-----CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHH
Confidence 764322 22345789999999998654 799999999999999999999999975211 11122222110
Q ss_pred -H-hcCCCCccccCccc---------CCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1000 -L-KSKKDPVEVLDPKL---------QGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1000 -~-~~~~~~~~~~~~~l---------~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
+ .......+...+.+ ....+....++++ .|++.||++||++.|+++
T Consensus 280 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~------~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 280 QIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCS------RLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHH------HHSCSSGGGSCCHHHHHT
T ss_pred HHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHH------HhccCChhHCCCHHHHhC
Confidence 0 00001111111111 1122334444444 499999999999999986
No 227
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=4.1e-36 Score=360.70 Aligned_cols=251 Identities=24% Similarity=0.321 Sum_probs=198.2
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
..++|++.+.||+|+||+||+|... +++.||+|++.... ......+.+|+++++.++|||||++++++.+.+..|+|
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 114 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLV 114 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3457999999999999999999854 68999999997542 33456789999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC---Ccceecccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER---YESCLADFGLARL 927 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~---~~~kl~DfGla~~ 927 (1117)
|||+++|+|.+.+... ..+++..+..++.||++||+|||++ +|+||||||+||+++.. +.+||+|||+++.
T Consensus 115 ~e~~~~g~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~ 188 (494)
T 3lij_A 115 MECYKGGELFDEIIHR---MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAV 188 (494)
T ss_dssp EECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred EecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeE
Confidence 9999999999888654 3489999999999999999999999 99999999999999764 4599999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
.... .......||+.|+|||++. ..++.++||||+||++|+|++|+.||... ...+.+...........
T Consensus 189 ~~~~-----~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~~~~ 257 (494)
T 3lij_A 189 FENQ-----KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQ-----TDQEILRKVEKGKYTFD 257 (494)
T ss_dssp CBTT-----BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCCCC
T ss_pred CCCC-----ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCCCCC
Confidence 6532 1234567999999999986 57999999999999999999999999642 22233333333222211
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. +. ....+..+.++++. |++.||.+|||+.++++
T Consensus 258 ~---~~-~~~~s~~~~~li~~------~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 258 S---PE-WKNVSEGAKDLIKQ------MLQFDSQRRISAQQALE 291 (494)
T ss_dssp S---GG-GTTSCHHHHHHHHH------HTCSSTTTSCCHHHHHT
T ss_pred c---hh-cccCCHHHHHHHHH------HCCCChhhCccHHHHhc
Confidence 1 11 12233455555555 99999999999999986
No 228
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=4.4e-36 Score=357.31 Aligned_cols=196 Identities=25% Similarity=0.333 Sum_probs=154.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeec-----CCc
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGAN-----RKT 846 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~-----~~~ 846 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||++... .....+++.+|++++++++|||||++++++.. ...
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 35799999999999999999975 46899999998653 23345678899999999999999999999843 356
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLAR 926 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~ 926 (1117)
.|+||||+ +|+|.+++... ..+++..+..++.||++||+|||++ +||||||||+|||++.++.+||+|||+++
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~ 204 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTP---VYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLAR 204 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEecc-ccchhhhcccC---CCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccch
Confidence 89999998 57899988764 3489999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCc-----------------------cccCCccccccccCChhhh-ccCCCCcCCCeeehhhhHHHHHh
Q 001238 927 LVEDDSGGS-----------------------FSANPQFAGSYGYIAPEYA-NMTKISEKSDVYSYGVVLLEIIT 977 (1117)
Q Consensus 927 ~~~~~~~~~-----------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~SlG~vl~ell~ 977 (1117)
......... .......+||+.|+|||++ ....|+.++|||||||++|||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence 765332110 0123456789999999976 56679999999999999999999
No 229
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=2.8e-36 Score=355.43 Aligned_cols=202 Identities=23% Similarity=0.320 Sum_probs=167.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeecC-----Cc
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGANR-----KT 846 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~~ 846 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||++... .....+++.+|++++++++||||+++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 46799999999999999999975 46889999999753 233456789999999999999999999998766 56
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLAR 926 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~ 926 (1117)
.|+||||++ |+|.+++... ..+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~---~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~ 177 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP---IFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLAR 177 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEecCC-cCHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence 899999986 6999998764 3489999999999999999999999 99999999999999999999999999998
Q ss_pred cccCCCCCc------------------cccCCccccccccCChhhh-ccCCCCcCCCeeehhhhHHHHHhCCCCCC
Q 001238 927 LVEDDSGGS------------------FSANPQFAGSYGYIAPEYA-NMTKISEKSDVYSYGVVLLEIITGKKPVD 983 (1117)
Q Consensus 927 ~~~~~~~~~------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~SlG~vl~ell~g~~P~~ 983 (1117)
......... ....+..+||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 765432110 0123567899999999986 56679999999999999999998655553
No 230
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2.2e-36 Score=348.35 Aligned_cols=199 Identities=29% Similarity=0.444 Sum_probs=174.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||+||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 357899999999999999999864 68999999998652 3335678999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++... +.+++..+..++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 112 ~~~~~~L~~~l~~~---~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS- 185 (360)
T ss_dssp CCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-
T ss_pred CCCCCCHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc-
Confidence 99999999999764 24899999999999999999999842 7999999999999999999999999999765432
Q ss_pred CCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
......||+.|+|||++.+..++.++||||||+++|||++|+.||..
T Consensus 186 -----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 232 (360)
T 3eqc_A 186 -----MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP 232 (360)
T ss_dssp -----C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred -----cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 22345799999999999999999999999999999999999999964
No 231
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.7e-37 Score=357.94 Aligned_cols=244 Identities=17% Similarity=0.203 Sum_probs=187.8
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC---CccchHHHHHHHH---HHhccCCCCcceEE-------
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS---DKISTGAFSSEIA---TLSRIRHRNIVRLL------- 838 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~---~l~~l~H~niv~l~------- 838 (1117)
...++|++.+.||+|+||+||+|.. .+|+.||||++... .....+.+.+|++ .+++++|||||+++
T Consensus 70 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~ 149 (377)
T 3byv_A 70 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF 149 (377)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCS
T ss_pred CCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhh
Confidence 3456789999999999999999985 56999999999743 3334567899994 55556899999998
Q ss_pred eeeecCC-----------------ceEEEEEecCCCChhhhhcCCCC----CCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 001238 839 GWGANRK-----------------TKLLFYDYMPNGTLGMLLHDGEC----AGLLEWDTRFKIALGVAEGLSYLHHDCVP 897 (1117)
Q Consensus 839 ~~~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~i~~~L~~LH~~~~~ 897 (1117)
+++.+.+ ..|+||||+ +|+|.+++..... ...+++..++.++.||++||+|||++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~--- 225 (377)
T 3byv_A 150 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY--- 225 (377)
T ss_dssp EEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---
Confidence 5555443 278999999 6899999975321 11244688889999999999999999
Q ss_pred ceeeeccccCeEEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccC-----------CCCcCCCee
Q 001238 898 AILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT-----------KISEKSDVY 966 (1117)
Q Consensus 898 ~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~ 966 (1117)
+|+||||||+|||++.++.+||+|||+++.... ......| +.|+|||++... .++.++|||
T Consensus 226 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Dvw 297 (377)
T 3byv_A 226 GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAW 297 (377)
T ss_dssp TEECSCCCGGGEEECTTCCEEECCGGGCEETTC-------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHH
T ss_pred CeecCCCCHHHEEEcCCCCEEEEechhheecCC-------cccCCCC-cCccChhhhcccccccccccccccCChhhhHH
Confidence 999999999999999999999999999986432 2234467 999999999877 899999999
Q ss_pred ehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCH
Q 001238 967 SYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTM 1046 (1117)
Q Consensus 967 SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~ 1046 (1117)
||||++|||++|+.||....... ....+.+. ....+..+.+++.. |++.||++||++
T Consensus 298 SlG~il~elltg~~Pf~~~~~~~----------------~~~~~~~~-~~~~~~~~~~li~~------~L~~dp~~Rpt~ 354 (377)
T 3byv_A 298 ALGLVIYWIWCADLPITKDAALG----------------GSEWIFRS-CKNIPQPVRALLEG------FLRYPKEDRLLP 354 (377)
T ss_dssp HHHHHHHHHHHSSCCC------C----------------CSGGGGSS-CCCCCHHHHHHHHH------HTCSSGGGCCCH
T ss_pred HHHHHHHHHHHCCCCCccccccc----------------chhhhhhh-ccCCCHHHHHHHHH------HcCCCchhCCCH
Confidence 99999999999999996421110 01111111 12334455555554 999999999999
Q ss_pred HHHHH
Q 001238 1047 KDVAA 1051 (1117)
Q Consensus 1047 ~~v~~ 1051 (1117)
.++++
T Consensus 355 ~e~l~ 359 (377)
T 3byv_A 355 LQAME 359 (377)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99986
No 232
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=3.5e-36 Score=335.15 Aligned_cols=245 Identities=18% Similarity=0.283 Sum_probs=197.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC--ccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD--KISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||+||+|... +++.||||+++... .....++.+|+..+.++ +||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 457899999999999999999864 79999999998642 33455788899999999 999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC---------------
Q 001238 851 YDYMPNGTLGMLLHDGEC-AGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER--------------- 914 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~--------------- 914 (1117)
|||+++++|.+++..... .+.+++.++..++.|+++||+|||++ +|+||||||+||+++.+
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC-----------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 999999999999976421 13489999999999999999999999 99999999999999844
Q ss_pred ----CcceeccccccccccCCCCCccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCCCCCCCCCC
Q 001238 915 ----YESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKPVDASFPDG 989 (1117)
Q Consensus 915 ----~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~ 989 (1117)
..+||+|||.++..... ....||+.|+|||++.+. .++.++||||||+++|||++|.+|+.. .
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~--------~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~----~ 234 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISSP--------QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRN----G 234 (289)
T ss_dssp ---CCCEEECCCTTCEETTCS--------CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSS----S
T ss_pred cCCceEEEEcccccccccCCc--------cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcc----h
Confidence 47899999999876432 223589999999998765 667899999999999999999987642 1
Q ss_pred hhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 990 QHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. ... ...... .+.++...+..+.++++. |++.||++||++.++++
T Consensus 235 ~-~~~---~~~~~~-------~~~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 235 D-QWH---EIRQGR-------LPRIPQVLSQEFTELLKV------MIHPDPERRPSAMALVK 279 (289)
T ss_dssp H-HHH---HHHTTC-------CCCCSSCCCHHHHHHHHH------HTCSSGGGSCCHHHHHT
T ss_pred h-HHH---HHHcCC-------CCCCCcccCHHHHHHHHH------HhCCCcccCCCHHHHhh
Confidence 1 111 111111 123334445566666665 99999999999999876
No 233
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=4.8e-36 Score=334.50 Aligned_cols=248 Identities=26% Similarity=0.394 Sum_probs=196.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeec----CCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGAN----RKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~----~~~~ 847 (1117)
.+.|++.+.||+|+||+||+|.. .++..||+|++... .....+.+.+|++++++++||||+++++++.. ....
T Consensus 25 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 104 (290)
T 1t4h_A 25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI 104 (290)
T ss_dssp SCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred ceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence 34578888999999999999975 46889999998754 23345678999999999999999999998765 3557
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--eeeeccccCeEEEc-CCCcceeccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPA--ILHRDVKSHNILLG-ERYESCLADFGL 924 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivHrDlkp~Nill~-~~~~~kl~DfGl 924 (1117)
++||||+++|+|.+++... +.+++..+..++.|+++||+|||++ + |+||||||+||+++ +++.+||+|||+
T Consensus 105 ~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~ 178 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGL 178 (290)
T ss_dssp EEEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTG
T ss_pred EEEEEecCCCCHHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCC
Confidence 9999999999999999764 3489999999999999999999998 7 99999999999998 789999999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
++..... ......||+.|+|||++. ..++.++||||+|+++|||++|+.||... ............ ..
T Consensus 179 ~~~~~~~------~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~----~~~~~~~~~~~~-~~ 246 (290)
T 1t4h_A 179 ATLKRAS------FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSEC----QNAAQIYRRVTS-GV 246 (290)
T ss_dssp GGGCCTT------SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTC----SSHHHHHHHHTT-TC
T ss_pred ccccccc------ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCc----CcHHHHHHHHhc-cC
Confidence 9754432 223457899999999887 56899999999999999999999999642 122222222221 11
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.+ .......+..+.+++.. |++.||++||++.++++
T Consensus 247 ~~-----~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 247 KP-----ASFDKVAIPEVKEIIEG------CIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CC-----GGGGGCCCHHHHHHHHH------HSCSSGGGSCCHHHHHT
T ss_pred Cc-----cccCCCCCHHHHHHHHH------HccCChhhCCCHHHHhh
Confidence 11 11222333445555554 99999999999999976
No 234
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=3.2e-36 Score=361.06 Aligned_cols=252 Identities=22% Similarity=0.290 Sum_probs=200.8
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
..++|++.++||+|+||+||+|... +++.||||++... .......+.+|++++++++|||||++++++.+.+..++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 4467999999999999999999854 7899999998643 233456789999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc---CCCcceecccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG---ERYESCLADFGLARL 927 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~---~~~~~kl~DfGla~~ 927 (1117)
|||+++|+|.+.+... +.+++.++..++.|+++||+|||++ +|+||||||+||+++ .++.+||+|||+++.
T Consensus 100 ~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 100 GELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp ECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EEcCCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 9999999999888654 3489999999999999999999999 999999999999995 456799999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
..... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||... ...+.+...........
T Consensus 174 ~~~~~-----~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~~~~ 242 (486)
T 3mwu_A 174 FQQNT-----KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK-----NEYDILKRVETGKYAFD 242 (486)
T ss_dssp BCCC---------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHTCCCSC
T ss_pred CCCCC-----ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHhCCCCCC
Confidence 64321 2334579999999999875 5999999999999999999999999642 22233333332221111
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
. +. ....+..+.++++. |++.||++|||+.++++.
T Consensus 243 ~---~~-~~~~s~~~~~li~~------~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 243 L---PQ-WRTISDDAKDLIRK------MLTFHPSLRITATQCLEH 277 (486)
T ss_dssp S---GG-GGGSCHHHHHHHHH------HTCSSTTTSCCHHHHHHC
T ss_pred C---cc-cCCCCHHHHHHHHH------HcCCChhhCcCHHHHhcC
Confidence 1 11 11223345555555 999999999999999884
No 235
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=2.7e-36 Score=361.76 Aligned_cols=250 Identities=23% Similarity=0.324 Sum_probs=202.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC---ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD---KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.++|++.+.||+|+||+||+|... +|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 357889999999999999999854 78999999997542 33467799999999999999999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---cCCCcceecccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL---GERYESCLADFGLARL 927 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill---~~~~~~kl~DfGla~~ 927 (1117)
|||+++|+|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 105 ~e~~~~~~L~~~~~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 105 GEVYTGGELFDEIISR---KRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp ECCCCSCBHHHHHHTC---SCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 9999999999988764 3489999999999999999999999 99999999999999 5678999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
..... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||... ...+.+...........
T Consensus 179 ~~~~~-----~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~~~~i~~~~~~~~ 247 (484)
T 3nyv_A 179 FEASK-----KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA-----NEYDILKKVEKGKYTFE 247 (484)
T ss_dssp BCCCC-----SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCCCC
T ss_pred ccccc-----ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHcCCCCCC
Confidence 65422 2234579999999999875 7999999999999999999999999642 22233333333221111
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. +.. ...+..+.++++. |++.+|++|||+.++++
T Consensus 248 ~---~~~-~~~s~~~~~li~~------~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 248 L---PQW-KKVSESAKDLIRK------MLTYVPSMRISARDALD 281 (484)
T ss_dssp S---GGG-GGSCHHHHHHHHH------HTCSSGGGSCCHHHHHT
T ss_pred C---ccc-ccCCHHHHHHHHH------HCCCChhHCcCHHHHhh
Confidence 1 111 1223445555555 99999999999999987
No 236
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=3.3e-36 Score=341.13 Aligned_cols=251 Identities=20% Similarity=0.275 Sum_probs=194.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--------ccchHHHHHHHHHHhccCCCCcceEEeeeecCC
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--------KISTGAFSSEIATLSRIRHRNIVRLLGWGANRK 845 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~ 845 (1117)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ......+.+|++++++++||||+++++++...+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 45799999999999999999975 468999999986432 122345889999999999999999999987654
Q ss_pred ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc---ceeccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE---SCLADF 922 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~---~kl~Df 922 (1117)
.++||||+++++|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++.++. +||+||
T Consensus 89 -~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Df 161 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVGN---KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDF 161 (322)
T ss_dssp -EEEEEECCTTEETHHHHSTT---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred -eEEEEecCCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccC
Confidence 89999999999999988754 3489999999999999999999999 9999999999999987664 999999
Q ss_pred cccccccCCCCCccccCCccccccccCChhhhc---cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHH
Q 001238 923 GLARLVEDDSGGSFSANPQFAGSYGYIAPEYAN---MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDH 999 (1117)
Q Consensus 923 Gla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~ 999 (1117)
|+++..... .......||+.|+|||++. ...++.++|||||||++|||++|+.||...... ......+..
T Consensus 162 g~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~- 234 (322)
T 2ycf_A 162 GHSKILGET-----SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-VSLKDQITS- 234 (322)
T ss_dssp TTCEECCCC-----HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS-SCHHHHHHH-
T ss_pred ccceecccc-----cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH-HHHHHHHHh-
Confidence 999876432 1123457899999999874 467889999999999999999999999753222 122222221
Q ss_pred HhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1000 LKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1000 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..... .+......+..+.++++. |++.||++||++.++++
T Consensus 235 --~~~~~----~~~~~~~~~~~~~~li~~------~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 235 --GKYNF----IPEVWAEVSEKALDLVKK------LLVVDPKARFTTEEALR 274 (322)
T ss_dssp --TCCCC----CHHHHTTSCHHHHHHHHH------HSCSSTTTSCCHHHHHT
T ss_pred --Ccccc----CchhhhhcCHHHHHHHHH------HcccCHhhCCCHHHHhh
Confidence 11111 112222334455555554 99999999999999975
No 237
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=2e-36 Score=339.75 Aligned_cols=253 Identities=22% Similarity=0.328 Sum_probs=197.1
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
..++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++...+..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 3467899999999999999999865 589999999987666667889999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++.... ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||++......
T Consensus 97 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 170 (302)
T 2j7t_A 97 FCPGGAVDAIMLELD--RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT- 170 (302)
T ss_dssp CCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-
T ss_pred eCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc-
Confidence 999999999887532 3489999999999999999999999 9999999999999999999999999998643211
Q ss_pred CCccccCCccccccccCChhhh-----ccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 933 GGSFSANPQFAGSYGYIAPEYA-----NMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
........||+.|+|||++ ....++.++||||||+++|||++|+.||... ............... .
T Consensus 171 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~-~ 241 (302)
T 2j7t_A 171 ---LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL-----NPMRVLLKIAKSDPP-T 241 (302)
T ss_dssp ---HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS-----CHHHHHHHHHHSCCC-C
T ss_pred ---ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHHhccCCc-c
Confidence 1122345789999999988 3567899999999999999999999999642 112222222222211 1
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. ..+...+..+.+++.. |++.||++||++.++++
T Consensus 242 -~---~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 242 -L---LTPSKWSVEFRDFLKI------ALDKNPETRPSAAQLLE 275 (302)
T ss_dssp -C---SSGGGSCHHHHHHHHH------HSCSCTTTSCCHHHHTT
T ss_pred -c---CCccccCHHHHHHHHH------HcccChhhCCCHHHHhc
Confidence 0 0112223345555554 99999999999999865
No 238
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=7.7e-36 Score=339.50 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=170.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccC-CCCcceEEeeeec--CCceEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRNIVRLLGWGAN--RKTKLLF 850 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~--~~~~~lv 850 (1117)
.++|++.+.||+|+||+||+|.. .+++.||||+++.. ..+.+.+|++++++++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 46799999999999999999974 57899999998743 3567999999999997 9999999999987 5678999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC-cceecccccccccc
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY-ESCLADFGLARLVE 929 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~-~~kl~DfGla~~~~ 929 (1117)
|||+++++|.+++.. +++.++..++.|+++||+|||++ +|+||||||+||+++.++ .+||+|||+++...
T Consensus 112 ~e~~~~~~l~~~~~~------~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~ 182 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT------LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH 182 (330)
T ss_dssp EECCCCCCHHHHGGG------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred EeccCchhHHHHHHh------CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcC
Confidence 999999999998853 78899999999999999999999 999999999999999776 89999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
... ......||+.|+|||++.. ..++.++||||+||++|||++|+.||..
T Consensus 183 ~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~ 233 (330)
T 3nsz_A 183 PGQ-----EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFH 233 (330)
T ss_dssp TTC-----CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred CCC-----ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCccc
Confidence 432 2334578999999999876 6789999999999999999999999954
No 239
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=3.8e-36 Score=371.79 Aligned_cols=248 Identities=19% Similarity=0.263 Sum_probs=204.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecC---CccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRAS---DKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~l 849 (1117)
..+|++.+.||+|+||+||+|+.. +++.||||+++.. .....+.+..|.+++..+ +||+|+++++++.+.+..|+
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l 419 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 419 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence 457899999999999999999854 6889999999753 223456688899999988 79999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.++++.. +.+++.+++.++.||+.||+|||++ +||||||||+|||++.++++||+|||+++...
T Consensus 420 V~E~~~gg~L~~~l~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~ 493 (674)
T 3pfq_A 420 VMEYVNGGDLMYHIQQV---GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 493 (674)
T ss_dssp EEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECC
T ss_pred EEeCcCCCcHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeeccc
Confidence 99999999999999864 3489999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEV 1009 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1117)
... ......+||+.|+|||++....|+.++|||||||++|||++|+.||.+. ...+..........
T Consensus 494 ~~~----~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~-----~~~~~~~~i~~~~~----- 559 (674)
T 3pfq_A 494 WDG----VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----DEDELFQSIMEHNV----- 559 (674)
T ss_dssp CTT----CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHSSCC-----
T ss_pred cCC----cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC-----CHHHHHHHHHhCCC-----
Confidence 321 2344578999999999999999999999999999999999999999642 22333444433321
Q ss_pred cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCH-----HHHHH
Q 001238 1010 LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTM-----KDVAA 1051 (1117)
Q Consensus 1010 ~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~-----~~v~~ 1051 (1117)
.++...+..+.++++. |++.||++||++ ++|.+
T Consensus 560 ---~~p~~~s~~~~~li~~------lL~~dP~~R~~~~~~~~~ei~~ 597 (674)
T 3pfq_A 560 ---AYPKSMSKEAVAICKG------LMTKHPGKRLGCGPEGERDIKE 597 (674)
T ss_dssp ---CCCTTSCHHHHHHHHH------HSCSSSTTCTTCSTTHHHHHHS
T ss_pred ---CCCccCCHHHHHHHHH------HccCCHHHCCCCCCCcHHHHhc
Confidence 2233445566666665 999999999987 66654
No 240
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=4.4e-36 Score=346.86 Aligned_cols=196 Identities=23% Similarity=0.299 Sum_probs=161.8
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCC------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRK------ 845 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~------ 845 (1117)
.++|++.+.||+|+||+||+|.. .+++.||||++.... ....+.+.+|+++++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 46899999999999999999974 468999999997542 233456889999999999999999999987665
Q ss_pred ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLA 925 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla 925 (1117)
..++||||+++ +|.+.+.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 174 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 174 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred ceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecc
Confidence 67999999974 78777753 288999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
+..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+
T Consensus 175 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 228 (371)
T 2xrw_A 175 RTAGTS-----FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 228 (371)
T ss_dssp --------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred cccccc-----cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence 865432 123346799999999999999999999999999999999999999965
No 241
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=8.5e-36 Score=358.84 Aligned_cols=253 Identities=23% Similarity=0.286 Sum_probs=200.8
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc-------------cchHHHHHHHHHHhccCCCCcceEE
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK-------------ISTGAFSSEIATLSRIRHRNIVRLL 838 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~H~niv~l~ 838 (1117)
...++|++.++||+|+||+||+|... +++.||||++..... ...+.+.+|++++++++|||||+++
T Consensus 33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~ 112 (504)
T 3q5i_A 33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF 112 (504)
T ss_dssp CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 35678999999999999999999854 688999999875421 2346789999999999999999999
Q ss_pred eeeecCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC---
Q 001238 839 GWGANRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY--- 915 (1117)
Q Consensus 839 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~--- 915 (1117)
+++.+.+..++||||+++|+|.+++... +.+++..+..++.|++.||+|||++ +|+||||||+||+++.++
T Consensus 113 ~~~~~~~~~~lv~e~~~gg~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 186 (504)
T 3q5i_A 113 DVFEDKKYFYLVTEFYEGGELFEQIINR---HKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLL 186 (504)
T ss_dssp EEEECSSEEEEEEECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCS
T ss_pred EEEEcCCEEEEEEecCCCCcHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCc
Confidence 9999999999999999999999988654 3489999999999999999999999 999999999999999776
Q ss_pred cceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHH
Q 001238 916 ESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQW 995 (1117)
Q Consensus 916 ~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~ 995 (1117)
.+||+|||+++...... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||... ...+.
T Consensus 187 ~~kl~Dfg~a~~~~~~~-----~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~-----~~~~~ 255 (504)
T 3q5i_A 187 NIKIVDFGLSSFFSKDY-----KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQ-----NDQDI 255 (504)
T ss_dssp SEEECCCTTCEECCTTS-----CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHH
T ss_pred cEEEEECCCCEEcCCCC-----ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCC-----CHHHH
Confidence 68999999998765421 233457999999999987 56999999999999999999999999642 22233
Q ss_pred HHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 996 VRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
+............ ......+..+.++++. |++.||.+|||+.++++.
T Consensus 256 ~~~i~~~~~~~~~----~~~~~~s~~~~~li~~------~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 256 IKKVEKGKYYFDF----NDWKNISDEAKELIKL------MLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp HHHHHHCCCCCCH----HHHTTSCHHHHHHHHH------HTCSSTTTSCCHHHHHTS
T ss_pred HHHHHcCCCCCCc----cccCCCCHHHHHHHHH------HcCCChhHCCCHHHHhcC
Confidence 3333332211111 1112233455555555 999999999999999873
No 242
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=7e-36 Score=344.47 Aligned_cols=204 Identities=24% Similarity=0.309 Sum_probs=167.6
Q ss_pred hHHHhccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCcc-----------chHHHHHHHHHHhccCCCCcceEE
Q 001238 770 SIGDATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKI-----------STGAFSSEIATLSRIRHRNIVRLL 838 (1117)
Q Consensus 770 ~~~~~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~H~niv~l~ 838 (1117)
++....++|++.+.||+|+||.||+|...+|+.||||++...... ..+.+.+|++++++++||||++++
T Consensus 16 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~ 95 (362)
T 3pg1_A 16 ELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLR 95 (362)
T ss_dssp HHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred HHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcccee
Confidence 566778999999999999999999999888999999998643211 126789999999999999999999
Q ss_pred eeeec-----CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC
Q 001238 839 GWGAN-----RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE 913 (1117)
Q Consensus 839 ~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~ 913 (1117)
+++.. ....++||||++ |+|.+++.... ..+++..+..++.|++.||+|||++ +|+||||||+||+++.
T Consensus 96 ~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~ 169 (362)
T 3pg1_A 96 DIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLAD 169 (362)
T ss_dssp EEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred eeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcC
Confidence 98843 335799999997 68887777542 3589999999999999999999999 9999999999999999
Q ss_pred CCcceeccccccccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 914 RYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 914 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
++.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||..
T Consensus 170 ~~~~kl~Dfg~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 236 (362)
T 3pg1_A 170 NNDITICDFNLAREDTAD-----ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRG 236 (362)
T ss_dssp TCCEEECCTTC--------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CCCEEEEecCcccccccc-----cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCC
Confidence 999999999999854432 12334578999999998876 6789999999999999999999999975
No 243
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.1e-35 Score=337.60 Aligned_cols=260 Identities=23% Similarity=0.285 Sum_probs=198.6
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc--CCCcEEEEEEeecCC--ccchHHHHHHHHHHhcc---CCCCcceEEeeee----
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL--PSGLTVAVKRFRASD--KISTGAFSSEIATLSRI---RHRNIVRLLGWGA---- 842 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~--~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~H~niv~l~~~~~---- 842 (1117)
+.++|++.+.||+|+||+||+|.. .+|+.||+|+++... ......+.+|+++++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 456899999999999999999986 468899999987432 22334677888888777 8999999999987
Q ss_pred -cCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecc
Q 001238 843 -NRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLAD 921 (1117)
Q Consensus 843 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~D 921 (1117)
.....++||||++ |+|.+++..... ..+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCT-TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred CCCceEEEEEecCC-CCHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEec
Confidence 5567899999998 699999876532 3489999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHh
Q 001238 922 FGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLK 1001 (1117)
Q Consensus 922 fGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~ 1001 (1117)
||+++..... .......||+.|+|||++.+..++.++||||||+++|||++|+.||.... .......+.....
T Consensus 164 fg~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--~~~~~~~i~~~~~ 236 (326)
T 1blx_A 164 FGLARIYSFQ-----MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSS--DVDQLGKILDVIG 236 (326)
T ss_dssp CCSCCCCCGG-----GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHHHC
T ss_pred CcccccccCC-----CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHcC
Confidence 9999865421 23345678999999999998999999999999999999999999997521 1112222221111
Q ss_pred cCCCC--c-------ccc-------CcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1002 SKKDP--V-------EVL-------DPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1002 ~~~~~--~-------~~~-------~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..... . ... ...+....+..+.+++.. |++.||++||++.++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~------~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 237 LPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLK------CLTFNPAKRISAYSALS 296 (326)
T ss_dssp CCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHH------HSCSSTTTSCCHHHHHT
T ss_pred CCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHH------HcCCCcccCCCHHHHhc
Confidence 00000 0 000 011122334445555554 99999999999999985
No 244
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=2.7e-36 Score=347.16 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=153.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEE-cCCCcEEEEEEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeeecC------C
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVT-LPSGLTVAVKRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGANR------K 845 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~-~~~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~------~ 845 (1117)
.++|++.+.||+|+||.||+|. ..+|+.||||++... .....+++.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 4689999999999999999997 457899999998653 223456788999999999999999999988654 5
Q ss_pred ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLA 925 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla 925 (1117)
..++||||+ +++|.+++... .+++..+..++.||++||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a 179 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA 179 (367)
T ss_dssp CCEEEEECC-CEECC-----C----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC----
T ss_pred eEEEEeccc-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccc
Confidence 679999999 78999888653 389999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
+.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+
T Consensus 180 ~~~~~-------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 232 (367)
T 2fst_X 180 RHTAD-------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPG 232 (367)
T ss_dssp ------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred ccccc-------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 87543 1234579999999999876 6889999999999999999999999965
No 245
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=2.3e-36 Score=346.56 Aligned_cols=256 Identities=19% Similarity=0.274 Sum_probs=201.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccc-----------------hHHHHHHHHHHhccCCCCcceE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKIS-----------------TGAFSSEIATLSRIRHRNIVRL 837 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~H~niv~l 837 (1117)
.++|++.+.||+|+||.||+|.. +|+.||||++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 35799999999999999999998 89999999987532111 1789999999999999999999
Q ss_pred EeeeecCCceEEEEEecCCCChhhh------hcCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-cCCCceeeeccccCeEE
Q 001238 838 LGWGANRKTKLLFYDYMPNGTLGML------LHDGECAGLLEWDTRFKIALGVAEGLSYLHH-DCVPAILHRDVKSHNIL 910 (1117)
Q Consensus 838 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivHrDlkp~Nil 910 (1117)
++++.+.+..++||||+++|+|.++ +.... ...+++..+..++.|++.||+|||+ + +|+||||||+||+
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil 184 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNY-TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNIL 184 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSS-CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhcc-ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEE
Confidence 9999999999999999999999998 55422 3459999999999999999999999 8 9999999999999
Q ss_pred EcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccC-CCCc-CCCeeehhhhHHHHHhCCCCCCCCCCC
Q 001238 911 LGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT-KISE-KSDVYSYGVVLLEIITGKKPVDASFPD 988 (1117)
Q Consensus 911 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~SlG~vl~ell~g~~P~~~~~~~ 988 (1117)
++.++.+||+|||.++..... ......||+.|+|||++.+. .++. ++||||||+++|||++|+.||......
T Consensus 185 ~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~ 258 (348)
T 2pml_X 185 MDKNGRVKLSDFGESEYMVDK------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL 258 (348)
T ss_dssp ECTTSCEEECCCTTCEECBTT------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS
T ss_pred EcCCCcEEEeccccccccccc------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH
Confidence 999999999999999876432 23345799999999999876 6666 999999999999999999999753221
Q ss_pred ChhHHHHHHHHHhcCCCCccccC----c-------ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 989 GQHVIQWVRDHLKSKKDPVEVLD----P-------KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~----~-------~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
................... + ......+..+.++++. |++.||++||++.++++
T Consensus 259 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~------~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 259 ----VELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKL------FLRKNPAERITSEDALK 322 (348)
T ss_dssp ----HHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHH------HCCSSGGGSCCHHHHHT
T ss_pred ----HHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHH------HccCChhhCCCHHHHhc
Confidence 2222222222111110000 0 0002334445555554 99999999999999976
No 246
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=8.4e-36 Score=350.58 Aligned_cols=197 Identities=24% Similarity=0.264 Sum_probs=171.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhcc------CCCCcceEEeeeecCCce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRI------RHRNIVRLLGWGANRKTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~H~niv~l~~~~~~~~~~ 847 (1117)
..+|++.+.||+|+||+||+|.. .+++.||||+++.. ......+.+|+++++.+ .|+||+++++++...+..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 45789999999999999999975 46899999999754 23345678899988887 567999999999999999
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc--ceecccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE--SCLADFGLA 925 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~--~kl~DfGla 925 (1117)
++||||+. ++|.+++..... ..+++..+..++.||++||+|||++ +|+||||||+|||++.++. +||+|||++
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a 249 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKF-QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSS 249 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEeccC-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccc
Confidence 99999996 689888876543 2389999999999999999999999 9999999999999999887 999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
+.... ......||+.|+|||++.+..++.++|||||||++|||++|++||..
T Consensus 250 ~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~ 301 (429)
T 3kvw_A 250 CYEHQ-------RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301 (429)
T ss_dssp EETTC-------CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred eecCC-------cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence 76542 22345789999999999999999999999999999999999999975
No 247
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=4.8e-36 Score=348.95 Aligned_cols=257 Identities=21% Similarity=0.281 Sum_probs=190.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCc------eE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT------KL 848 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~------~~ 848 (1117)
..+|++.+.||+|+||+||+|+...+..||+|++..... ...+|+++++.++||||+++++++...+. .+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 346899999999999999999987777799998875432 23479999999999999999999854432 78
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc-CCCcceecccccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG-ERYESCLADFGLARL 927 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~-~~~~~kl~DfGla~~ 927 (1117)
+||||++++.+............+++..+..++.|+++||+|||++ +|+||||||+||+++ .++.+||+|||+++.
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 9999998765554433222234589999999999999999999999 999999999999999 799999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhc----
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKS---- 1002 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~---- 1002 (1117)
..... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+... ...+...+. ....
T Consensus 192 ~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~~-~~g~p~~~ 264 (394)
T 4e7w_A 192 LIAGE-----PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEIIK-VLGTPSRE 264 (394)
T ss_dssp CCTTC-----CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHH-HHCCCCHH
T ss_pred ccCCC-----CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHH-HhCCCCHH
Confidence 64332 2334578999999998865 4689999999999999999999999975311 111111111 1000
Q ss_pred -----CCCCccccCc---------ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1003 -----KKDPVEVLDP---------KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1003 -----~~~~~~~~~~---------~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.....+..-+ .+....+..+.+++. .|++.||++||++.|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~------~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 265 QIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLIS------RLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHH------HHCCSSGGGSCCHHHHHT
T ss_pred HHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHH------HHhCCChhhCCCHHHHhc
Confidence 0000000000 111223334445554 499999999999999987
No 248
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=4.2e-36 Score=341.68 Aligned_cols=200 Identities=27% Similarity=0.392 Sum_probs=169.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc--chHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI--STGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||.||+|... +|+.||||++...... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 357889999999999999999864 5899999998754322 2455789999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++++|.++..... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 104 e~~~~~~l~~~~~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 177 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN---GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP 177 (331)
T ss_dssp ECCSEEHHHHHHHSTT---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred ecCCcchHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence 9999999998876542 389999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
. .......||+.|+|||++.+. .++.++||||+||++|||++|+.||..
T Consensus 178 ~----~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 227 (331)
T 4aaa_A 178 G----EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPG 227 (331)
T ss_dssp ----------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred c----cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCC
Confidence 2 122345789999999998765 789999999999999999999999965
No 249
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.1e-35 Score=342.90 Aligned_cols=260 Identities=23% Similarity=0.303 Sum_probs=197.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecC-----Cce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANR-----KTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~~~ 847 (1117)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 45789999999999999999975 468899999997543 22346788999999999999999999988654 367
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||++ |+|.+++... .+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 106 ~iv~e~~~-~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~ 177 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARV 177 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEcccC-cCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEe
Confidence 99999997 5899888753 389999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhc-cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcC---
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYAN-MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSK--- 1003 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~--- 1003 (1117)
...... .........||+.|+|||++. ...++.++||||+||++|||++|+.||..... ......+.......
T Consensus 178 ~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~i~~~~~~~~~~ 254 (364)
T 3qyz_A 178 ADPDHD-HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHY--LDQLNHILGILGSPSQE 254 (364)
T ss_dssp CCGGGC-BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSG--GGHHHHHHHHHCSCCHH
T ss_pred cCCCCC-ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCCh--HHHHHHHHHHhCCCCHH
Confidence 653211 111234568999999999865 45589999999999999999999999975321 22222222111100
Q ss_pred -----------------CCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1004 -----------------KDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1004 -----------------~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
......-...+....+..+.++++ .|++.||++||++.++++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~------~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 255 DLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLD------KMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHH------HHTCSSTTTSCCHHHHHT
T ss_pred HHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHH------HHcCCChhhCCCHHHHhc
Confidence 000000001111222334444444 499999999999999987
No 250
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1.6e-35 Score=331.63 Aligned_cols=253 Identities=22% Similarity=0.303 Sum_probs=201.0
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc---------cchHHHHHHHHHHhccC-CCCcceEEeee
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK---------ISTGAFSSEIATLSRIR-HRNIVRLLGWG 841 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-H~niv~l~~~~ 841 (1117)
...++|++.+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+++++++. ||||+++++++
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 34568999999999999999999864 689999999975431 12346788999999995 99999999999
Q ss_pred ecCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecc
Q 001238 842 ANRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLAD 921 (1117)
Q Consensus 842 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~D 921 (1117)
...+..++||||+++++|.+++... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 94 ~~~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~d 167 (298)
T 1phk_A 94 ETNTFFFLVFDLMKKGELFDYLTEK---VTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTD 167 (298)
T ss_dssp ECSSEEEEEEECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred ccCCeEEEEEeccCCCcHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEec
Confidence 9999999999999999999999764 3489999999999999999999999 999999999999999999999999
Q ss_pred ccccccccCCCCCccccCCccccccccCChhhhc------cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHH
Q 001238 922 FGLARLVEDDSGGSFSANPQFAGSYGYIAPEYAN------MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQW 995 (1117)
Q Consensus 922 fGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~ 995 (1117)
||+++...... ......||+.|+|||++. ...++.++||||||+++|||++|+.||... .....
T Consensus 168 fg~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~ 237 (298)
T 1phk_A 168 FGFSCQLDPGE-----KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR-----KQMLM 237 (298)
T ss_dssp CTTCEECCTTC-----CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHH
T ss_pred ccchhhcCCCc-----ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc-----cHHHH
Confidence 99998765321 223457899999999885 456889999999999999999999999642 11222
Q ss_pred HHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 996 VRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
............. +. ....+..+.+++.. |++.||++||++.++++
T Consensus 238 ~~~~~~~~~~~~~---~~-~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 238 LRMIMSGNYQFGS---PE-WDDYSDTVKDLVSR------FLVVQPQKRYTAEEALA 283 (298)
T ss_dssp HHHHHHTCCCCCT---TT-GGGSCHHHHHHHHH------HCCSSGGGSCCHHHHTT
T ss_pred HHHHhcCCcccCc---cc-ccccCHHHHHHHHH------HccCCcccCCCHHHHHh
Confidence 2222222211111 11 11223445555554 99999999999999976
No 251
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=334.30 Aligned_cols=251 Identities=22% Similarity=0.330 Sum_probs=197.6
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
..++|++.+.||+|+||.||+|... +|+.||||++.... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 3567899999999999999999764 58999999997643 35678999999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++.... ..+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 105 ~~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (314)
T 3com_A 105 YCGAGSVSDIIRLRN--KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM 179 (314)
T ss_dssp CCTTEEHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB
T ss_pred cCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc
Confidence 999999999986422 3489999999999999999999999 99999999999999999999999999998765321
Q ss_pred CCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCc
Q 001238 933 GGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDP 1012 (1117)
Q Consensus 933 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1117)
.......||+.|+|||++....++.++||||||+++|||++|+.||.... ............ .. ..
T Consensus 180 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~~~~~~-~~-~~--- 245 (314)
T 3com_A 180 ----AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH-----PMRAIFMIPTNP-PP-TF--- 245 (314)
T ss_dssp ----SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC-----HHHHHHHHHHSC-CC-CC---
T ss_pred ----cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC-----hHHHHHHHhcCC-Cc-cc---
Confidence 12334578999999999999999999999999999999999999996421 111111111111 11 10
Q ss_pred ccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1013 KLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1013 ~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..+...+..+.+++.. |++.||++||++.++++
T Consensus 246 ~~~~~~~~~l~~li~~------~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 246 RKPELWSDNFTDFVKQ------CLVKSPEQRATATQLLQ 278 (314)
T ss_dssp SSGGGSCHHHHHHHHH------HTCSCTTTSCCHHHHTT
T ss_pred CCcccCCHHHHHHHHH------HccCChhhCcCHHHHHh
Confidence 0112233455555555 99999999999999976
No 252
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=335.80 Aligned_cols=253 Identities=23% Similarity=0.365 Sum_probs=195.5
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeec------C
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGAN------R 844 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~------~ 844 (1117)
...++|++.+.||+|+||.||+|.. .+|+.||||++.... ...+.+.+|+++++++ +||||+++++++.. .
T Consensus 21 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~ 99 (326)
T 2x7f_A 21 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD 99 (326)
T ss_dssp CCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCC
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCcccc
Confidence 4567899999999999999999985 578999999997543 3456889999999999 79999999999876 4
Q ss_pred CceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccc
Q 001238 845 KTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGL 924 (1117)
Q Consensus 845 ~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGl 924 (1117)
+..++||||+++|+|.+++.... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 100 ~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~ 175 (326)
T 2x7f_A 100 DQLWLVMEFCGAGSVTDLIKNTK-GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGV 175 (326)
T ss_dssp CEEEEEEECCTTEEHHHHHHHSG-GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTT
T ss_pred ceEEEEEEcCCCCcHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcC
Confidence 67899999999999999998653 23489999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhc-----cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHH
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYAN-----MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDH 999 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~ 999 (1117)
++...... .......||+.|+|||++. ...++.++||||||+++|||++|+.||.... ........
T Consensus 176 ~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~~~ 246 (326)
T 2x7f_A 176 SAQLDRTV----GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH-----PMRALFLI 246 (326)
T ss_dssp TC-----------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSC-----HHHHHHHH
T ss_pred ceecCcCc----cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc-----HHHHHHHh
Confidence 98764321 1233457999999999986 5678999999999999999999999996421 11111111
Q ss_pred HhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1000 LKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1000 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.... .+ . ......+..+.++++. |++.||++||++.++++
T Consensus 247 ~~~~-~~-~----~~~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 247 PRNP-AP-R----LKSKKWSKKFQSFIES------CLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HHSC-CC-C----CSCSCSCHHHHHHHHH------HCCSSGGGSCCHHHHHT
T ss_pred hcCc-cc-c----CCccccCHHHHHHHHH------HhccChhhCCCHHHHhh
Confidence 1111 11 1 1122334456666655 99999999999999987
No 253
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=340.59 Aligned_cols=262 Identities=24% Similarity=0.357 Sum_probs=198.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~e 852 (1117)
.++|++.+.||+|+||.||+|.... .||+|+++... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 4678999999999999999998743 59999987542 2334568899999999999999999999999999999999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCC
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDS 932 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~ 932 (1117)
|+++++|.+++.... ..+++.++..++.|+++||+|||++ +|+||||||+||+++ ++.+||+|||+++......
T Consensus 110 ~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 110 LCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp CCCSEEHHHHTTSSC--CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred cccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 999999999997643 3488999999999999999999999 999999999999998 6799999999987653221
Q ss_pred CC-ccccCCccccccccCChhhhcc---------CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhc
Q 001238 933 GG-SFSANPQFAGSYGYIAPEYANM---------TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKS 1002 (1117)
Q Consensus 933 ~~-~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~ 1002 (1117)
.. .........||+.|+|||++.. ..++.++||||||+++|||++|+.||... ............
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~-----~~~~~~~~~~~~ 258 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ-----PAEAIIWQMGTG 258 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSC-----CHHHHHHHHHTT
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCC-----CHHHHHHHhccC
Confidence 11 1122234568999999999864 45788999999999999999999999642 111222222221
Q ss_pred CCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCCC
Q 001238 1003 KKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEPA 1061 (1117)
Q Consensus 1003 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~~ 1061 (1117)
. .+ .. .....+..+.+++.. |++.+|++||++.+++++|+++.+...
T Consensus 259 ~-~~-~~----~~~~~~~~l~~li~~------~l~~~p~~Rpt~~~l~~~l~~l~~~~~ 305 (319)
T 2y4i_B 259 M-KP-NL----SQIGMGKEISDILLF------CWAFEQEERPTFTKLMDMLEKLPKRNR 305 (319)
T ss_dssp C-CC-CC----CCSSCCTTHHHHHHH------HHCSSTTTSCCHHHHHHHHTTC-----
T ss_pred C-CC-CC----CcCCCCHHHHHHHHH------HhcCChhhCcCHHHHHHHHHHHHHhhc
Confidence 1 11 11 111233456666655 999999999999999999998876543
No 254
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.4e-36 Score=346.19 Aligned_cols=264 Identities=21% Similarity=0.294 Sum_probs=193.3
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecC-------
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANR------- 844 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~------- 844 (1117)
...++|++.+.||+|+||+||+|.. .+|+.||||++..... ...+|+++++.++|||||++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 3456899999999999999999974 5799999999875432 234799999999999999999988443
Q ss_pred -------------------------------CceEEEEEecCCCChhhhhcCC-CCCCCCCHHHHHHHHHHHHHHHHHHh
Q 001238 845 -------------------------------KTKLLFYDYMPNGTLGMLLHDG-ECAGLLEWDTRFKIALGVAEGLSYLH 892 (1117)
Q Consensus 845 -------------------------------~~~~lv~e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH 892 (1117)
...++||||++ |+|.+.+... ...+.+++..+..++.|+++||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34789999998 5777766531 12245899999999999999999999
Q ss_pred ccCCCceeeeccccCeEEEc-CCCcceeccccccccccCCCCCccccCCccccccccCChhhhccC-CCCcCCCeeehhh
Q 001238 893 HDCVPAILHRDVKSHNILLG-ERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGV 970 (1117)
Q Consensus 893 ~~~~~~ivHrDlkp~Nill~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~ 970 (1117)
++ +|+||||||+||+++ .++.+||+|||+++...... ......||+.|+|||++.+. .++.++||||+||
T Consensus 159 ~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~ 230 (383)
T 3eb0_A 159 SL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE-----PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGC 230 (383)
T ss_dssp TT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS-----CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHH
T ss_pred HC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC-----CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHH
Confidence 99 999999999999998 68899999999998764432 23345789999999988764 5899999999999
Q ss_pred hHHHHHhCCCCCCCCCCCChhHHHHHHHHHhc---------CCCCcccc---------CcccCCCCchhHHHHHHHHhHh
Q 001238 971 VLLEIITGKKPVDASFPDGQHVIQWVRDHLKS---------KKDPVEVL---------DPKLQGHPDTQIQEMLQALGIS 1032 (1117)
Q Consensus 971 vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~---------~~~l~~~~~~~~~~~l~~~~i~ 1032 (1117)
++|||++|+.||.+... .......+. .... .....+.. ...++...+..+.+++..
T Consensus 231 il~ell~g~~pf~~~~~-~~~~~~i~~-~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---- 304 (383)
T 3eb0_A 231 VFGELILGKPLFSGETS-IDQLVRIIQ-IMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQ---- 304 (383)
T ss_dssp HHHHHHHSSCSSCCSSH-HHHHHHHHH-HHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHH----
T ss_pred HHHHHHhCCCCCCCCCh-HHHHHHHHH-HhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHH----
Confidence 99999999999975211 111111111 1000 00000000 011222233344555554
Q ss_pred hhccCCCCCCCCCHHHHHH--HHHhhh
Q 001238 1033 LLCTSNRAEDRPTMKDVAA--LLREIR 1057 (1117)
Q Consensus 1033 ~~C~~~~p~~RPs~~~v~~--~L~~~~ 1057 (1117)
|++.||++|||+.|+++ .++.++
T Consensus 305 --~L~~dP~~R~t~~e~l~hp~f~~~~ 329 (383)
T 3eb0_A 305 --ILRYEPDLRINPYEAMAHPFFDHLR 329 (383)
T ss_dssp --HCCSSGGGSCCHHHHHTSGGGHHHH
T ss_pred --HccCChhhCCCHHHHhcCHHHHHHH
Confidence 99999999999999986 344444
No 255
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=9.2e-36 Score=337.19 Aligned_cols=257 Identities=21% Similarity=0.277 Sum_probs=190.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeee-----------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGA----------- 842 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~----------- 842 (1117)
.++|++.+.||+|+||.||+|... +|+.||||++........+++.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 357899999999999999999865 58999999998776666678999999999999999999998873
Q ss_pred ---cCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc-CCCcce
Q 001238 843 ---NRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG-ERYESC 918 (1117)
Q Consensus 843 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~-~~~~~k 918 (1117)
+....++||||++ |+|.+++... .+++..+..++.|+++||+|||++ +|+||||||+||+++ +++.+|
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~k 161 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLK 161 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEE
Confidence 3467799999997 6999998653 388999999999999999999999 999999999999997 567999
Q ss_pred eccccccccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHH
Q 001238 919 LADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVR 997 (1117)
Q Consensus 919 l~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~ 997 (1117)
|+|||+++....... .........+|..|+|||.+.. ..++.++||||||+++|||++|+.||.... ......
T Consensus 162 l~Dfg~~~~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-----~~~~~~ 235 (320)
T 2i6l_A 162 IGDFGLARIMDPHYS-HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH-----ELEQMQ 235 (320)
T ss_dssp ECCCTTCBCC---------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH
T ss_pred EccCccccccCCCcc-cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC-----HHHHHH
Confidence 999999987643211 1122334567999999998765 678999999999999999999999997531 111222
Q ss_pred HHHhcCCCCccc----------------------cCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 998 DHLKSKKDPVEV----------------------LDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 998 ~~~~~~~~~~~~----------------------~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
............ -........+..+.+++ ..|++.||++||++.++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li------~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 236 LILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFL------EQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHH------HTTSCSSGGGSCCHHHHHT
T ss_pred HHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHH------HHHcCCCccccCCHHHHhC
Confidence 221111100000 00011122333444444 4599999999999999987
No 256
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=8e-37 Score=353.32 Aligned_cols=254 Identities=11% Similarity=0.067 Sum_probs=178.7
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc---cchHHHHHHHHHHhcc--CCCCcceEE-------eee
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK---ISTGAFSSEIATLSRI--RHRNIVRLL-------GWG 841 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~H~niv~l~-------~~~ 841 (1117)
...|++.+.||+|+||+||+|.+ .+|+.||||++..... ...+.+.+|+++++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 45688899999999999999985 4789999999987543 2345677886555555 699988755 333
Q ss_pred ecC-----------------CceEEEEEecCCCChhhhhcCCCCCCCCCHHHH------HHHHHHHHHHHHHHhccCCCc
Q 001238 842 ANR-----------------KTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTR------FKIALGVAEGLSYLHHDCVPA 898 (1117)
Q Consensus 842 ~~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~i~~~L~~LH~~~~~~ 898 (1117)
... ...|+||||++ |+|.+++.... ..+++..+ ..++.||++||+|||++ +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~--~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ 214 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD--FVYVFRGDEGILALHILTAQLIRLAANLQSK---G 214 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH--HSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc--cccchhhhhhhhhHHHHHHHHHHHHHHHHHC---C
Confidence 322 23799999998 89999998642 12455555 77889999999999999 9
Q ss_pred eeeeccccCeEEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhcc--CCCCcCCCeeehhhhHHHHH
Q 001238 899 ILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM--TKISEKSDVYSYGVVLLEII 976 (1117)
Q Consensus 899 ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~vl~ell 976 (1117)
|+||||||+|||++.++.+||+|||+++..... .....+|+.|+|||++.+ ..++.++|||||||++|||+
T Consensus 215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~ell 287 (371)
T 3q60_A 215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-------GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVW 287 (371)
T ss_dssp EEETTCSGGGEEECTTSCEEECCGGGEEETTCE-------EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHH
T ss_pred CccCcCCHHHEEECCCCCEEEEecceeeecCCC-------ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHH
Confidence 999999999999999999999999999866421 113467799999999987 78999999999999999999
Q ss_pred hCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 977 TGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 977 ~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
+|+.||....+......... ............+. ....+..+.+++.. |++.||++||++.++++
T Consensus 288 tg~~Pf~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~li~~------~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 288 CLFLPFGLVTPGIKGSWKRP---SLRVPGTDSLAFGS-CTPLPDFVKTLIGR------FLNFDRRRRLLPLEAME 352 (371)
T ss_dssp HSSCSTTBCCTTCTTCCCBC---CTTSCCCCSCCCTT-SSCCCHHHHHHHHH------HTCSSTTTCCCHHHHTT
T ss_pred hCCCCCCCcCcccccchhhh---hhhhccccccchhh-ccCCCHHHHHHHHH------HcCCChhhCCCHHHHhc
Confidence 99999976433211100000 00000000001111 12334455555555 99999999999999975
No 257
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.4e-36 Score=349.42 Aligned_cols=203 Identities=24% Similarity=0.353 Sum_probs=154.8
Q ss_pred cCCCC-CCeeeecCCeEEEEEEcC---CCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeee--cCCceEE
Q 001238 776 RSLTA-GNIIGQGRSGIVYKVTLP---SGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGA--NRKTKLL 849 (1117)
Q Consensus 776 ~~~~~-~~~lg~G~fg~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~--~~~~~~l 849 (1117)
+.|.+ +++||+|+||+||+|++. +++.||||++.... ....+.+|++++++++|||||++++++. .....++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 34555 568999999999999854 57899999997543 2457889999999999999999999984 4678899
Q ss_pred EEEecCCCChhhhhcCCC------CCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE----cCCCccee
Q 001238 850 FYDYMPNGTLGMLLHDGE------CAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL----GERYESCL 919 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill----~~~~~~kl 919 (1117)
||||++ |+|.+++.... ....+++..++.++.||+.||+|||++ +|+||||||+||++ +.++.+||
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 999996 57777665321 122489999999999999999999999 99999999999999 67789999
Q ss_pred ccccccccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCC
Q 001238 920 ADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDAS 985 (1117)
Q Consensus 920 ~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~ 985 (1117)
+|||+++...... ..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...
T Consensus 174 ~Dfg~a~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 174 ADMGFARLFNSPL-KPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp CCTTCCC-----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred EECCCceecCCCC-cccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 9999998765321 11123345689999999999876 45899999999999999999999999653
No 258
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=1.8e-35 Score=341.63 Aligned_cols=195 Identities=24% Similarity=0.369 Sum_probs=166.9
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCce---
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTK--- 847 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~--- 847 (1117)
..++|.+.+.||+|+||+||+|.. .+|+.||||++.... ....+++.+|+++++.++||||+++++++...+..
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 346899999999999999999975 468999999997542 22346788999999999999999999999877655
Q ss_pred ---EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccc
Q 001238 848 ---LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGL 924 (1117)
Q Consensus 848 ---~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGl 924 (1117)
++||||++ ++|.+++.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~ 190 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL 190 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred eeEEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCc
Confidence 99999997 688887743 289999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||..
T Consensus 191 a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 244 (371)
T 4exu_A 191 ARHADAE-------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKG 244 (371)
T ss_dssp C---------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred ccccccC-------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCC
Confidence 9865432 234578999999999877 7889999999999999999999999965
No 259
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=3.4e-35 Score=327.08 Aligned_cols=253 Identities=22% Similarity=0.301 Sum_probs=201.6
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceE
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKL 848 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~ 848 (1117)
+...++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 345578999999999999999999864 68999999987542 334667999999999999999999999999999999
Q ss_pred EEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC---Ccceecccccc
Q 001238 849 LFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER---YESCLADFGLA 925 (1117)
Q Consensus 849 lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~---~~~kl~DfGla 925 (1117)
+||||+++++|.+++... +.+++.++..++.|++.||+|||++ +|+||||||+||+++.+ +.+||+|||++
T Consensus 98 lv~e~~~~~~L~~~l~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~ 171 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKR---KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLS 171 (287)
T ss_dssp EEECCCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGG
T ss_pred EEEEccCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcc
Confidence 999999999998888654 2489999999999999999999999 99999999999999764 46999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCC
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKD 1005 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1117)
+...... ......||+.|+|||.+.+ .++.++||||||+++|+|++|+.||... ...............
T Consensus 172 ~~~~~~~-----~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~ 240 (287)
T 2wei_A 172 TCFQQNT-----KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK-----NEYDILKRVETGKYA 240 (287)
T ss_dssp GTBCCCS-----SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHHHHHHCCCC
T ss_pred eeecCCC-----ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCC-----CHHHHHHHHHcCCCC
Confidence 8764321 2234568999999998875 5899999999999999999999999642 122222222222211
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.. .+. ....+..+.++++. |++.||++||++.++++
T Consensus 241 ~~---~~~-~~~~~~~~~~li~~------~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 241 FD---LPQ-WRTISDDAKDLIRK------MLTFHPSLRITATQCLE 276 (287)
T ss_dssp CC---SGG-GTTSCHHHHHHHHH------HTCSSGGGSCCHHHHHH
T ss_pred CC---chh-hhhcCHHHHHHHHH------HcccChhhCcCHHHHhc
Confidence 11 011 12233455555555 99999999999999987
No 260
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.2e-35 Score=331.35 Aligned_cols=253 Identities=24% Similarity=0.328 Sum_probs=183.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCcc--chHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKI--STGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||+++..... ..+.+.++...++.++||||+++++++.+.+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 35788999999999999999985 57899999999754221 1223445555688889999999999999999999999
Q ss_pred EecCCCChhhhhcCC-CCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 852 DYMPNGTLGMLLHDG-ECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
||++ |+|.+++... .....+++..+..++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 162 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 162 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence 9997 5887776542 12245899999999999999999999853 899999999999999999999999999987654
Q ss_pred CCCCccccCCccccccccCChhhh----ccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCC
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYA----NMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDP 1006 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1117)
.. ......||+.|+|||++ ....++.++||||+|+++|||++|+.||.... .....+..........
T Consensus 163 ~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~~~~~~~~~ 233 (290)
T 3fme_A 163 DV-----AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG----TPFQQLKQVVEEPSPQ 233 (290)
T ss_dssp ------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCS----CHHHHHHHHHHSCCCC
T ss_pred cc-----cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccC----chHHHHHHHhccCCCC
Confidence 22 22334799999999996 56678999999999999999999999996421 1222222222222111
Q ss_pred ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1007 VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1007 ~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
......+..+.+++.. |++.||++||++.++++
T Consensus 234 ------~~~~~~~~~~~~li~~------~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 234 ------LPADKFSAEFVDFTSQ------CLKKNSKERPTYPELMQ 266 (290)
T ss_dssp ------CCTTTSCHHHHHHHHH------HTCSSGGGSCCHHHHTT
T ss_pred ------cccccCCHHHHHHHHH------HhhcChhhCcCHHHHHh
Confidence 0112234445555554 99999999999999987
No 261
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.8e-35 Score=339.79 Aligned_cols=202 Identities=24% Similarity=0.384 Sum_probs=169.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecC-----Cce
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANR-----KTK 847 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~-----~~~ 847 (1117)
.++|++.+.||+|+||+||+|... +|+.||||++.... .....++.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 467899999999999999999854 68999999997543 23345688999999999999999999987654 678
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
++||||++ |+|.+++... .+++..+..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 90 ~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARI 161 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence 99999997 6899888753 389999999999999999999999 999999999999999999999999999987
Q ss_pred ccCCCCCc------cccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 928 VEDDSGGS------FSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 928 ~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
........ ........||+.|+|||++.. ..++.++|||||||++|||++|+.||..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 225 (353)
T 2b9h_A 162 IDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPG 225 (353)
T ss_dssp CC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCC
Confidence 65332111 112234578999999998754 7789999999999999999999999975
No 262
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.2e-35 Score=363.78 Aligned_cols=257 Identities=23% Similarity=0.373 Sum_probs=202.2
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC----CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCceEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP----SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~l 849 (1117)
.++|++.+.||+|+||+||+|.+. .+..||||+++... ....+.+.+|+.++++++||||+++++++. ++..++
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~l 467 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 467 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEE
Confidence 457889999999999999999753 25679999987543 233467899999999999999999999985 467899
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||||+++|+|.+++.... ..+++..++.++.|+++||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 468 v~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~ 542 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 542 (656)
T ss_dssp EEECCTTCBHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCC
T ss_pred EEEcCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecC
Confidence 999999999999997543 3489999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCCCcc
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKDPVE 1008 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1117)
... ........+|+.|+|||++....++.++||||||+++|||++ |..||.+. . ..+.+........
T Consensus 543 ~~~---~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~--~---~~~~~~~i~~~~~---- 610 (656)
T 2j0j_A 543 DST---YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV--K---NNDVIGRIENGER---- 610 (656)
T ss_dssp C-------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--C---HHHHHHHHHHTCC----
T ss_pred CCc---ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCC--C---HHHHHHHHHcCCC----
Confidence 322 112234467889999999999999999999999999999997 99999642 1 1222222222211
Q ss_pred ccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001238 1009 VLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQ 1058 (1117)
Q Consensus 1009 ~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~ 1058 (1117)
+..+...+..+.+++.. ||+.||++||++.++++.|+++..
T Consensus 611 ---~~~~~~~~~~l~~li~~------~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 611 ---LPMPPNCPPTLYSLMTK------CWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp ---CCCCTTCCHHHHHHHHH------HTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CCCCccccHHHHHHHHH------HcCCChhHCcCHHHHHHHHHHHHH
Confidence 11223344455555554 999999999999999999988754
No 263
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=1.4e-35 Score=341.66 Aligned_cols=206 Identities=21% Similarity=0.246 Sum_probs=159.1
Q ss_pred hHHHhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeecCCc--
Q 001238 770 SIGDATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT-- 846 (1117)
Q Consensus 770 ~~~~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-- 846 (1117)
......++|++.+.||+|+||+||+|.. .+|+.||||++..... ...++.+|++.++.++||||+++++++...+.
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~ 95 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD 95 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence 4456678999999999999999999986 4689999999875432 34467788889999999999999999865433
Q ss_pred -----eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHh--ccCCCceeeeccccCeEEEcC-CCcce
Q 001238 847 -----KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLH--HDCVPAILHRDVKSHNILLGE-RYESC 918 (1117)
Q Consensus 847 -----~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH--~~~~~~ivHrDlkp~Nill~~-~~~~k 918 (1117)
.++||||++++.+..+.........+++..+..++.|++.||+||| ++ +|+||||||+||+++. ++.+|
T Consensus 96 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 96 RRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp TTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEEE
T ss_pred ccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcEE
Confidence 7899999987533333221122345889999999999999999999 77 9999999999999997 89999
Q ss_pred eccccccccccCCCCCccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 919 LADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 919 l~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
|+|||+++...... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||..
T Consensus 173 l~Dfg~a~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~ 234 (360)
T 3e3p_A 173 LCDFGSAKKLSPSE-----PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRG 234 (360)
T ss_dssp ECCCTTCBCCCTTS-----CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EeeCCCceecCCCC-----CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCC
Confidence 99999998765432 22345789999999998654 489999999999999999999999975
No 264
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=2.8e-35 Score=332.19 Aligned_cols=253 Identities=23% Similarity=0.353 Sum_probs=195.4
Q ss_pred hccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--ccchHHHHHHHHHHhccC--CCCcceEEeeeecCCceEE
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--KISTGAFSSEIATLSRIR--HRNIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~~~~~l 849 (1117)
..++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++.+.+..++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 456799999999999999999998889999999997543 334567899999999997 5999999999999999999
Q ss_pred EEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 850 FYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 850 v~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||| +.+++|.+++.... .+++..+..++.|+++||+|||++ +|+||||||+||++++ +.+||+|||+++...
T Consensus 106 v~e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~ 177 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQ 177 (313)
T ss_dssp EEC-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC--
T ss_pred EEe-cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeecccccccc
Confidence 999 56889999997643 489999999999999999999999 9999999999999965 899999999998765
Q ss_pred CCCCCccccCCccccccccCChhhhcc-----------CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHH
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYANM-----------TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRD 998 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~ 998 (1117)
.... ........||+.|+|||++.. ..++.++||||||+++|||++|+.||..... ....+..
T Consensus 178 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----~~~~~~~ 251 (313)
T 3cek_A 178 PDTT--SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN----QISKLHA 251 (313)
T ss_dssp --------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCS----HHHHHHH
T ss_pred Cccc--cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHH----HHHHHHH
Confidence 4321 112234579999999999865 4688899999999999999999999964321 1222222
Q ss_pred HHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 999 HLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 999 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
...... ...++...+..+.++++. |++.||++||++.++++.
T Consensus 252 ~~~~~~------~~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 252 IIDPNH------EIEFPDIPEKDLQDVLKC------CLKRDPKQRISIPELLAH 293 (313)
T ss_dssp HHCTTS------CCCCCCCSCHHHHHHHHH------HTCSSTTTSCCHHHHHTS
T ss_pred HHhccc------ccCCcccchHHHHHHHHH------HccCCcccCcCHHHHhcC
Confidence 222111 112223334455555555 999999999999999874
No 265
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=3.9e-35 Score=329.20 Aligned_cols=254 Identities=24% Similarity=0.373 Sum_probs=191.0
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEeeeec----------
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGWGAN---------- 843 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~---------- 843 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 45788999999999999999985 47899999999653 2345678899999999999999999998754
Q ss_pred ---CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceec
Q 001238 844 ---RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLA 920 (1117)
Q Consensus 844 ---~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~ 920 (1117)
.+..++||||+++|+|.+++.... ..+++.+++.++.|+++||+|||++ +|+||||||+||+++.++.+||+
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~ 158 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSEN--LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIG 158 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEEC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccc--cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEe
Confidence 346789999999999999997543 3478899999999999999999999 99999999999999999999999
Q ss_pred cccccccccCCCCC----------ccccCCccccccccCChhhhccC-CCCcCCCeeehhhhHHHHHhCCCCCCCCCCCC
Q 001238 921 DFGLARLVEDDSGG----------SFSANPQFAGSYGYIAPEYANMT-KISEKSDVYSYGVVLLEIITGKKPVDASFPDG 989 (1117)
Q Consensus 921 DfGla~~~~~~~~~----------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~ 989 (1117)
|||+++........ .........||+.|+|||++.+. .++.++||||||+++|||++ ||.. .
T Consensus 159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~----~ 231 (303)
T 1zy4_A 159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST----G 231 (303)
T ss_dssp CCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS----H
T ss_pred eCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC----c
Confidence 99999876432100 01123355799999999998754 78999999999999999998 5532 1
Q ss_pred hhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 990 QHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
............... ...+.+....+..+.++++. |++.||++||++.++++
T Consensus 232 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 232 MERVNILKKLRSVSI----EFPPDFDDNKMKVEKKIIRL------LIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHHHHHHHHHHSTTC----CCCTTCCTTTSHHHHHHHHH------HTCSSGGGSCCHHHHHH
T ss_pred hhHHHHHHhcccccc----ccCccccccchHHHHHHHHH------HHhcCcccCcCHHHHhC
Confidence 222222322222111 11222333333445555555 99999999999999987
No 266
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.8e-35 Score=345.65 Aligned_cols=199 Identities=23% Similarity=0.246 Sum_probs=168.4
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccC--------CCCcceEEeeee---
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIR--------HRNIVRLLGWGA--- 842 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------H~niv~l~~~~~--- 842 (1117)
.++|++.++||+|+||+||+|.. .+++.||||+++.. ....+.+.+|++++++++ ||||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 36799999999999999999974 56899999999754 334567889999999996 788999999887
Q ss_pred -cCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCC------
Q 001238 843 -NRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERY------ 915 (1117)
Q Consensus 843 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~------ 915 (1117)
.....++||||+ ++++.+.+.... .+.+++..++.++.||++||+|||+++ +|+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~-~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSN-YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTT-TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhh
Confidence 556789999999 455555554332 234899999999999999999999864 799999999999999775
Q ss_pred -------------------------------------------cceeccccccccccCCCCCccccCCccccccccCChh
Q 001238 916 -------------------------------------------ESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPE 952 (1117)
Q Consensus 916 -------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE 952 (1117)
.+||+|||+++..... .....||+.|+|||
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-------~~~~~gt~~y~aPE 263 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-------FTEDIQTRQYRSLE 263 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-------SCSCCSCGGGCCHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-------CccCCCCCcccCCh
Confidence 7999999999876432 23457899999999
Q ss_pred hhccCCCCcCCCeeehhhhHHHHHhCCCCCCCC
Q 001238 953 YANMTKISEKSDVYSYGVVLLEIITGKKPVDAS 985 (1117)
Q Consensus 953 ~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~ 985 (1117)
++.+..++.++|||||||++|||++|+.||...
T Consensus 264 ~~~~~~~~~~~DiwslG~il~elltg~~pf~~~ 296 (397)
T 1wak_A 264 VLIGSGYNTPADIWSTACMAFELATGDYLFEPH 296 (397)
T ss_dssp HHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred hhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999999999999999999999999999999754
No 267
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=3.2e-35 Score=334.78 Aligned_cols=251 Identities=19% Similarity=0.262 Sum_probs=169.6
Q ss_pred ccCCCCC-CeeeecCCeEEEEEEcC-CCcEEEEEEeecCCccchHHHHHHH-HHHhccCCCCcceEEeeeec----CCce
Q 001238 775 TRSLTAG-NIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEI-ATLSRIRHRNIVRLLGWGAN----RKTK 847 (1117)
Q Consensus 775 ~~~~~~~-~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~-~~l~~l~H~niv~l~~~~~~----~~~~ 847 (1117)
.++|.+. +.||+|+||+||+|... +|+.||||++.... ...+|+ ..++.++||||+++++++.. ....
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 4578885 46999999999999865 68999999987531 223333 34566799999999999876 4457
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC---CCcceeccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE---RYESCLADFGL 924 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~---~~~~kl~DfGl 924 (1117)
++||||+++|+|.+++..... ..+++.+++.++.|+++||+|||++ +|+||||||+||+++. ++.+||+|||+
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGD-QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-C-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEEeccCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 999999999999999987532 3489999999999999999999999 9999999999999986 45599999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
++..... ......||+.|+|||++....++.++||||||+++|||++|+.||...... ..............
T Consensus 178 ~~~~~~~------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~ 249 (336)
T 3fhr_A 178 AKETTQN------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQ--AISPGMKRRIRLGQ 249 (336)
T ss_dssp CEEC----------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------
T ss_pred ceecccc------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccch--hhhhhHHHhhhccc
Confidence 9865432 223457899999999998889999999999999999999999999653221 11111111111100
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. ..........+..+.++++. |++.||++||++.++++
T Consensus 250 --~-~~~~~~~~~~~~~~~~li~~------~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 250 --Y-GFPNPEWSEVSEDAKQLIRL------LLKTDPTERLTITQFMN 287 (336)
T ss_dssp ----CCCTTTSTTCCHHHHHHHHH------HSCSSGGGSCCHHHHHH
T ss_pred --c-ccCchhhccCCHHHHHHHHH------HCCCChhHCcCHHHHhc
Confidence 0 00111112334455555555 99999999999999988
No 268
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.8e-35 Score=337.81 Aligned_cols=253 Identities=23% Similarity=0.341 Sum_probs=194.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC-ccchHHHHHHHHH-HhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD-KISTGAFSSEIAT-LSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||+||+|.. .+|+.||||+++... .....++..|..+ ++.++||||+++++++.+.+..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 45788889999999999999985 579999999997642 2233455566665 77889999999999999999999999
Q ss_pred EecCCCChhhhhcCC-CCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 852 DYMPNGTLGMLLHDG-ECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
||+++ +|.+++... .....+++..+..++.||++||+|||++. +|+||||||+||+++.++.+||+|||+++....
T Consensus 130 e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~ 206 (340)
T 3an0_A 130 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVD 206 (340)
T ss_dssp CCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHHHHSC
T ss_pred HHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCceeccc
Confidence 99975 898887642 12245899999999999999999999742 899999999999999999999999999987643
Q ss_pred CCCCccccCCccccccccCChhhhc----cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCC
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYAN----MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDP 1006 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1117)
. .......||+.|+|||++. ...++.++|||||||++|||++|+.||.... .....+..........
T Consensus 207 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~----~~~~~~~~~~~~~~~~ 277 (340)
T 3an0_A 207 S-----VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG----TPFQQLKQVVEEPSPQ 277 (340)
T ss_dssp H-----HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCS----CHHHHHHHHHHSCCCC
T ss_pred c-----cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCcccc----chHHHHHHHhcCCCCC
Confidence 1 1222347999999999964 3478999999999999999999999996421 1122223333222110
Q ss_pred ccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1007 VEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1007 ~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
. .....+..+.+++.. |++.||++||++.++++
T Consensus 278 --~----~~~~~~~~~~~li~~------~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 278 --L----PADKFSAEFVDFTSQ------CLKKNSKERPTYPELMQ 310 (340)
T ss_dssp --C----CGGGSCHHHHHHHHH------HTCSSGGGSCCHHHHTT
T ss_pred --C----CcccCCHHHHHHHHH------HccCCcccCcCHHHHhc
Confidence 0 011223445555554 99999999999999987
No 269
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-35 Score=341.11 Aligned_cols=349 Identities=18% Similarity=0.204 Sum_probs=211.0
Q ss_pred CCCCCCCCCCCcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhh-hcccccCcEeecc
Q 001238 52 LSNWSPSDETPCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKE-IASLNQLNYLDLS 130 (1117)
Q Consensus 52 l~sW~~~~~~~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls 130 (1117)
+++|.....+||.|.++.|.... +.++....+. .....-..+.+++.|++++|.++ .+|.. +.++++|++|+|+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~--~~i~~~~~~~--~~~~~~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYD--VHIDMQTQDV--YFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEES--CEECSSCCCC--EESCSSGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceee--eeeecccccc--cccccccccCCceEEEecCCchh-hCChhHhcccccCcEEECC
Confidence 67898765444455555553221 1111111111 11122235688999999999998 45544 7899999999999
Q ss_pred CCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCC
Q 001238 131 ENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGS 210 (1117)
Q Consensus 131 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 210 (1117)
+|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|+|++|+++...+..|+.+++|++|++++|+. .+.
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~ 156 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERI 156 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-Ccc
Confidence 9999876677899999999999999999988888899999999999999999864444568888888888888763 445
Q ss_pred CCccccccccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCC
Q 001238 211 LPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNL 290 (1117)
Q Consensus 211 lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 290 (1117)
.|..++++++|+.|++++|.+++. .+..+++|+.|++++|.+.+ +...++|++|++++|.++. +|.. ..
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~-~~~~--~~ 225 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV-VRGP--VN 225 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE-EECC--CC
T ss_pred ChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeee-cccc--cc
Confidence 555677777777777777777654 24455566666666665543 1223455666666666553 2322 13
Q ss_pred CCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEe
Q 001238 291 KNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIEL 370 (1117)
Q Consensus 291 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 370 (1117)
++|++|++++|++++. +.+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++ +|..+..+++|++|++
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence 4556666666665532 345555666666666666655555555555666666666665552 3444455555556666
Q ss_pred cCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeeccccccc
Q 001238 371 DNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLT 424 (1117)
Q Consensus 371 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 424 (1117)
++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++.
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 555555 3344444555555555555555432 1 334445555555555544
No 270
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=7.4e-35 Score=338.10 Aligned_cols=200 Identities=25% Similarity=0.246 Sum_probs=170.5
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccC-CC-----CcceEEeeeecCCc
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HR-----NIVRLLGWGANRKT 846 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~-----niv~l~~~~~~~~~ 846 (1117)
..++|++.+.||+|+||+||+|.. .+++.||||+++.. .....++.+|+++++.++ |+ +|+++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 356899999999999999999975 46889999999753 233456788999998885 55 49999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc--CCCcceeccccc
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG--ERYESCLADFGL 924 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~--~~~~~kl~DfGl 924 (1117)
.++||||++ |+|.+++..... +.+++..+..++.|++.||+|||++ ..+|+||||||+||+++ .++.+||+|||+
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~ 207 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNF-RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGS 207 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred eEEEEecCC-CCHHHHHhhcCc-CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence 999999996 599998876542 3489999999999999999999952 12899999999999995 478899999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 208 a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 208 SCQLGQR-------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp CEETTCC-------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred ceecccc-------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9876432 2345789999999999999999999999999999999999999975
No 271
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=5.7e-35 Score=335.51 Aligned_cols=253 Identities=21% Similarity=0.276 Sum_probs=191.5
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCC--ccchHHHHHHHHHHhccCCCCcceEEeeeecCCc-----
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASD--KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT----- 846 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~----- 846 (1117)
.++|.+.+.||+|+||.||+|.. .+|+.||||++.... ....+++.+|+.++++++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 35788999999999999999975 468999999997542 2234578899999999999999999999887654
Q ss_pred -eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccc
Q 001238 847 -KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLA 925 (1117)
Q Consensus 847 -~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla 925 (1117)
.++||||++ ++|.+++.. .+++.++..++.|+++||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~ 173 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA 173 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred eEEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccc
Confidence 499999997 688877753 289999999999999999999999 9999999999999999999999999999
Q ss_pred ccccCCCCCccccCCccccccccCChhhhcc-CCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHh---
Q 001238 926 RLVEDDSGGSFSANPQFAGSYGYIAPEYANM-TKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLK--- 1001 (1117)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~--- 1001 (1117)
+..... .....||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.+... ......+.....
T Consensus 174 ~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~--~~~~~~i~~~~~~~~ 244 (353)
T 3coi_A 174 RHADAE-------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY--LDQLTQILKVTGVPG 244 (353)
T ss_dssp TC---------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCH--HHHHHHHHHHHCBCC
T ss_pred cCCCCC-------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHHHhCCCC
Confidence 865421 234578999999999876 6789999999999999999999999975311 111111111100
Q ss_pred -----------------cCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1002 -----------------SKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1002 -----------------~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
........-........+..+.+++.. |++.||++||++.++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~------~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 245 TEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEK------MLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHH------HSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHH------HcCCCcccCCCHHHHhc
Confidence 000000000011112234455555555 99999999999999976
No 272
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=4.9e-35 Score=334.07 Aligned_cols=197 Identities=23% Similarity=0.332 Sum_probs=171.8
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc--CCCcEEEEEEeecCCccchHHHHHHHHHHhccCCC------CcceEEeeeecCCc
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL--PSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHR------NIVRLLGWGANRKT 846 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~------niv~l~~~~~~~~~ 846 (1117)
.++|++.+.||+|+||+||+|.. .+++.||||+++... ...+.+.+|+++++.++|+ +++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 35789999999999999999975 368899999997542 3456788999999998765 49999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC-------------
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE------------- 913 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~------------- 913 (1117)
.++||||+ +++|.+++..... ..+++.++..++.|+++||+|||++ +|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~ 166 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGF-LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKR 166 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred EEEEEcCC-CCCHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCcccc
Confidence 99999999 8899998876532 3488999999999999999999999 9999999999999987
Q ss_pred ------CCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 914 ------RYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 914 ------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 167 ~~~~~~~~~~kl~Dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 236 (339)
T 1z57_A 167 DERTLINPDIKVVDFGSATYDDEH-------HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPT 236 (339)
T ss_dssp EEEEESCCCEEECCCSSCEETTSC-------CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred ccccccCCCceEeeCcccccCccc-------cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCC
Confidence 668999999999865432 2345789999999999999999999999999999999999999964
No 273
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=329.61 Aligned_cols=243 Identities=22% Similarity=0.407 Sum_probs=189.7
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCcc------chHHHHHHHHHHhcc----CCCCcceEEee
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKI------STGAFSSEIATLSRI----RHRNIVRLLGW 840 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~H~niv~l~~~ 840 (1117)
....++|++.+.||+|+||.||+|.. .+++.||||++...... ....+.+|+++++++ +||||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 34457899999999999999999975 46899999999754321 233466799999998 89999999999
Q ss_pred eecCCceEEEEEe-cCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc-CCCcce
Q 001238 841 GANRKTKLLFYDY-MPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG-ERYESC 918 (1117)
Q Consensus 841 ~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~-~~~~~k 918 (1117)
+...+..++|||| +++++|.+++... +.+++..++.++.|+++||+|||++ +|+||||||+||+++ .++.+|
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~k 180 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYITEK---GPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAK 180 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEE
T ss_pred EecCCeEEEEEEecCCCCCHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEE
Confidence 9999999999999 7899999999764 3489999999999999999999999 999999999999999 889999
Q ss_pred eccccccccccCCCCCccccCCccccccccCChhhhccCCCC-cCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHH
Q 001238 919 LADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKIS-EKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVR 997 (1117)
Q Consensus 919 l~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~ 997 (1117)
|+|||+++..... ......||+.|+|||++....+. .++||||||+++|||++|+.||... ..
T Consensus 181 l~dfg~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~--- 244 (312)
T 2iwi_A 181 LIDFGSGALLHDE------PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD-------QE--- 244 (312)
T ss_dssp ECCCSSCEECCSS------CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH-------HH---
T ss_pred EEEcchhhhcccC------cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh-------HH---
Confidence 9999999876542 22345689999999998876664 5899999999999999999999631 11
Q ss_pred HHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 998 DHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 998 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
..... ..++...+..+.+++.. |++.+|++||++.++++
T Consensus 245 -~~~~~--------~~~~~~~~~~~~~li~~------~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 245 -ILEAE--------LHFPAHVSPDCCALIRR------CLAPKPSSRPSLEEILL 283 (312)
T ss_dssp -HHHTC--------CCCCTTSCHHHHHHHHH------HTCSSTTTSCCHHHHHH
T ss_pred -Hhhhc--------cCCcccCCHHHHHHHHH------HccCChhhCcCHHHHhc
Confidence 11111 11223344455555554 99999999999999987
No 274
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=3.5e-35 Score=332.20 Aligned_cols=241 Identities=24% Similarity=0.432 Sum_probs=196.7
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCcc------chHHHHHHHHHHhccC--CCCcceEEeeeecC
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKI------STGAFSSEIATLSRIR--HRNIVRLLGWGANR 844 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~ 844 (1117)
..++|++.+.||+|+||.||+|.. .+++.||||++...... ..+++.+|++++++++ ||||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 346799999999999999999974 57899999999754321 2346778999999996 59999999999999
Q ss_pred CceEEEEEecCC-CChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc-CCCcceeccc
Q 001238 845 KTKLLFYDYMPN-GTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG-ERYESCLADF 922 (1117)
Q Consensus 845 ~~~~lv~e~~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~-~~~~~kl~Df 922 (1117)
+..++||||+.+ ++|.+++... +.+++..+..++.|+++||+|||++ +|+||||||+||+++ +++.+||+||
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~---~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Df 194 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDF 194 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCC
T ss_pred CcEEEEEEcCCCCccHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeC
Confidence 999999999976 8999998763 3489999999999999999999999 999999999999999 7899999999
Q ss_pred cccccccCCCCCccccCCccccccccCChhhhccCCC-CcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHh
Q 001238 923 GLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKI-SEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLK 1001 (1117)
Q Consensus 923 Gla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~ 1001 (1117)
|+++..... ......||+.|+|||++....+ +.++||||||+++|||++|+.||... . ....
T Consensus 195 g~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~----~-------~~~~ 257 (320)
T 3a99_A 195 GSGALLKDT------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----E-------EIIR 257 (320)
T ss_dssp TTCEECCSS------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----H-------HHHH
T ss_pred ccccccccc------cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh----h-------hhhc
Confidence 999876532 2234579999999999887666 68899999999999999999999641 0 1111
Q ss_pred cCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1002 SKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1002 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
... ......+..+.++++. |++.||++||++.++++
T Consensus 258 ~~~--------~~~~~~~~~~~~li~~------~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 258 GQV--------FFRQRVSSECQHLIRW------CLALRPSDRPTFEEIQN 293 (320)
T ss_dssp CCC--------CCSSCCCHHHHHHHHH------HTCSSGGGSCCHHHHHT
T ss_pred ccc--------cccccCCHHHHHHHHH------HccCChhhCcCHHHHhc
Confidence 111 1122334455555555 99999999999999977
No 275
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=3.4e-35 Score=346.23 Aligned_cols=254 Identities=22% Similarity=0.305 Sum_probs=181.5
Q ss_pred CCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEEEEecC
Q 001238 777 SLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLFYDYMP 855 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~~ 855 (1117)
.|.+.+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +|||||++++++.+.+..++||||++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 45556889999999998776668999999998753 245678999999987 89999999999999999999999995
Q ss_pred CCChhhhhcCCCCCC----CCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC-------------Ccce
Q 001238 856 NGTLGMLLHDGECAG----LLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER-------------YESC 918 (1117)
Q Consensus 856 ~gsL~~~l~~~~~~~----~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~-------------~~~k 918 (1117)
|+|.+++....... ...+..++.++.||+.||+|||++ +|+||||||+||+++.+ +.+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k 168 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEE
Confidence 69999998653211 113334578999999999999999 99999999999999754 4899
Q ss_pred eccccccccccCCCCCccccCCccccccccCChhhhcc-------CCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCCh
Q 001238 919 LADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANM-------TKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQ 990 (1117)
Q Consensus 919 l~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~ 990 (1117)
|+|||+++.................||++|+|||++.+ ..++.++|||||||++|||++ |+.||.....
T Consensus 169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~--- 245 (434)
T 2rio_A 169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS--- 245 (434)
T ss_dssp ECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT---
T ss_pred EcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh---
Confidence 99999998875432221122335679999999999865 678999999999999999999 9999964321
Q ss_pred hHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 991 HVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.... .......... ........+. .....++..|++.||++||++.++++
T Consensus 246 ~~~~----i~~~~~~~~~-----~~~~~~~~~~--~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 246 RESN----IIRGIFSLDE-----MKCLHDRSLI--AEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHH----HHHTCCCCCC-----CTTCCCHHHH--HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hHHH----HhcCCCCccc-----ccccccccch--HHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 1111 1111111111 1111111111 11223555699999999999999975
No 276
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=1.2e-34 Score=329.24 Aligned_cols=256 Identities=24% Similarity=0.331 Sum_probs=175.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCc-cchHHHHHHHH-HHhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDK-ISTGAFSSEIA-TLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~-~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||.||+|.. .+|+.||||+++.... ....++..|+. +++.++||||+++++++...+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 35788999999999999999986 4689999999976532 23345556666 677789999999999999999999999
Q ss_pred EecCCCChhhhhcCC--CCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccccc
Q 001238 852 DYMPNGTLGMLLHDG--ECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVE 929 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~--~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~ 929 (1117)
||+++ +|.+++... .....+++..+.+++.|++.||+|||+.. +|+||||||+||+++.++.+||+|||+++...
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~ 177 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLV 177 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence 99985 777776531 11244899999999999999999999852 79999999999999999999999999998764
Q ss_pred CCCCCccccCCccccccccCChhhh----ccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCC
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYA----NMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKD 1005 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1117)
... ......||+.|+|||++ ....++.++||||||+++|||++|+.||..... ....+......
T Consensus 178 ~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~~~~~~--- 245 (327)
T 3aln_A 178 DSI-----AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNS----VFDQLTQVVKG--- 245 (327)
T ss_dssp ---------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCS---
T ss_pred ccc-----ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcch----HHHHHHHHhcC---
Confidence 321 22334799999999998 456789999999999999999999999964211 11111110110
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
....+........+..+.+++.. |++.||++||++.++++
T Consensus 246 ~~~~~~~~~~~~~~~~l~~li~~------~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 246 DPPQLSNSEEREFSPSFINFVNL------CLTKDESKRPKYKELLK 285 (327)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHH------HTCSSGGGSCCHHHHTT
T ss_pred CCCCCCCcccccCCHHHHHHHHH------HhhCChhhCcCHHHHHh
Confidence 01111111122344455555555 99999999999999976
No 277
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-34 Score=337.99 Aligned_cols=335 Identities=21% Similarity=0.223 Sum_probs=212.0
Q ss_pred CCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHH
Q 001238 313 NCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLL 392 (1117)
Q Consensus 313 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 392 (1117)
.++++++|++++|.++...+..+..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35788888888888885555556778888888888888887667778888888888888888887777777777777777
Q ss_pred HhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCccc
Q 001238 393 FVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLT 472 (1117)
Q Consensus 393 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 472 (1117)
++++|+++...+..|..+++|++|++++|++++..|..+..+++|++|++++|++++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 7777777744444456777777777777777765556666667777777777766654 2444556666666666655
Q ss_pred ccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcC
Q 001238 473 GFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLG 552 (1117)
Q Consensus 473 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 552 (1117)
+. ...++|+.|++++|+++.. |.. ..++|+.|++++|.+++. ..+..
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~----------------------- 246 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN----------------------- 246 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcC-----------------------
Confidence 32 2234566666666665532 221 134555555555555532 23444
Q ss_pred CCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccE
Q 001238 553 SLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGI 632 (1117)
Q Consensus 553 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~ 632 (1117)
+++|+.|+|++|.+++..|..|..+++|+.|+|++|+++ .+|..+..++++ +.|+|++|+++ .+|..+..+++|+.
T Consensus 247 -l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~L~~n~l~-~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 247 -YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL-KVLDLSHNHLL-HVERNQPQFDRLEN 322 (390)
T ss_dssp -CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTC-CEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred -CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCC-CEEECCCCcce-ecCccccccCcCCE
Confidence 445555555555555444555555555555555555555 234444445555 45555555555 34555666777777
Q ss_pred EeccCccccCCcchhhhcccceEEEeecccccCCCCCCcccccCCcccccCCCCCCcC
Q 001238 633 LDLSHNELSGDLHFLAELQNLVVLNVSHNNFSGRVPDTPFFAKLPLSVLSGNPSLCFS 690 (1117)
Q Consensus 633 LdLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~~c~~ 690 (1117)
|+|++|+++... +..+++|+.|++++|++++... ...+..+....+.+++..|..
T Consensus 323 L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 323 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred EECCCCccceeC--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence 777777776542 5566777788888887776322 234556666677888888863
No 278
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-34 Score=354.07 Aligned_cols=348 Identities=18% Similarity=0.186 Sum_probs=217.5
Q ss_pred CCCCCCCCCCCCcc----eeeEEecCCCcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcE
Q 001238 51 GLSNWSPSDETPCK----WFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNY 126 (1117)
Q Consensus 51 ~l~sW~~~~~~~C~----W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 126 (1117)
.+++|.++. .||. |.+|.|+. .++....+....+ .-..+.+++.|++++|.++...+..+.++++|++
T Consensus 8 ~l~~~~~~~-~C~~~~~~~~c~~~~~-----~i~~~~~~~~~~~--~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~ 79 (597)
T 3oja_B 8 NVKPRQPEY-KCIDSNLQYDCVFYDV-----HIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79 (597)
T ss_dssp ---CCCSEE-CCCCC--CCSEEECSC-----EECSSCCCCEESC--SSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred cccCCCCCC-cCcccCcCceeEecCc-----eecccccccccCc--ccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence 478998654 3443 77766652 1222211111111 1224678899999999998544555788999999
Q ss_pred eeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCC
Q 001238 127 LDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKN 206 (1117)
Q Consensus 127 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 206 (1117)
|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+.+++|++|++++|.
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~- 158 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN- 158 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-
Confidence 9999999997777889999999999999999998888888999999999999999986555556778877777777775
Q ss_pred CCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCcc
Q 001238 207 LGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSK 286 (1117)
Q Consensus 207 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 286 (1117)
+.+..|..++++++|+.|++++|.+++.. +.. +++|++|++++|.+++
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~------------------------l~~L~~L~l~~n~l~~----- 206 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLTHVD---LSL------------------------IPSLFHANVSYNLLST----- 206 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGG------------------------CTTCSEEECCSSCCSE-----
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCCCcC---hhh------------------------hhhhhhhhcccCcccc-----
Confidence 34455555666666666666666655431 233 4455555555555543
Q ss_pred CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCc
Q 001238 287 LGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLA 366 (1117)
Q Consensus 287 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 366 (1117)
+...++|+.|++++|.+....+.. .++|+.|+|++|.+++ +..+..+++|++|+|++|.+++..|..|+++++|+
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 122234555555555555332211 1455555566555553 23455555666666666666555555555566666
Q ss_pred EEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCcc
Q 001238 367 QIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNN 446 (1117)
Q Consensus 367 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 446 (1117)
.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| +..+++|+.|++++|.
T Consensus 282 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 282 RLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSC
T ss_pred EEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCC
Confidence 66666666553 3444455556666666666665 344555566666666666666664 22 4556677777777777
Q ss_pred CCC
Q 001238 447 LSG 449 (1117)
Q Consensus 447 l~~ 449 (1117)
+.+
T Consensus 357 ~~~ 359 (597)
T 3oja_B 357 WDC 359 (597)
T ss_dssp EEH
T ss_pred CCC
Confidence 653
No 279
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=1.3e-34 Score=335.29 Aligned_cols=198 Identities=23% Similarity=0.316 Sum_probs=168.2
Q ss_pred cCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHHhccC-----------CCCcceEEeeeec
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-----------HRNIVRLLGWGAN 843 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------H~niv~l~~~~~~ 843 (1117)
++|++.+.||+|+||+||+|.. .+++.||||++... ....+.+.+|++++++++ ||||+++++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 5788999999999999999985 57899999999753 234567889999999886 8999999999876
Q ss_pred CC----ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc------C
Q 001238 844 RK----TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG------E 913 (1117)
Q Consensus 844 ~~----~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~------~ 913 (1117)
.+ ..++||||+ +++|.+++..... +.+++..+..++.||+.||+|||+++ +|+||||||+||+++ .
T Consensus 98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~ 173 (373)
T 1q8y_A 98 KGPNGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPEN 173 (373)
T ss_dssp EETTEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTT
T ss_pred cCCCCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcC
Confidence 54 678999999 8999999876433 34899999999999999999999953 899999999999995 3
Q ss_pred CCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCC
Q 001238 914 RYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDAS 985 (1117)
Q Consensus 914 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~ 985 (1117)
.+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 174 ~~~~kl~Dfg~a~~~~~~-------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 238 (373)
T 1q8y_A 174 LIQIKIADLGNACWYDEH-------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD 238 (373)
T ss_dssp EEEEEECCCTTCEETTBC-------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred cceEEEcccccccccCCC-------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 448999999999876432 23447899999999999999999999999999999999999999753
No 280
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.3e-35 Score=329.94 Aligned_cols=289 Identities=20% Similarity=0.272 Sum_probs=200.7
Q ss_pred cccchhHHHHHHHHHhhccCCC-CCCCCCC---CCCCCCcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeE
Q 001238 28 PYAVNRQGEALLSWKRNWKGSD-DGLSNWS---PSDETPCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRL 103 (1117)
Q Consensus 28 ~~~~~~~~~aLl~~k~~~~~~~-~~l~sW~---~~~~~~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L 103 (1117)
..+..+|++||++||+++..++ +.+++|. ....++|.|.||+|+..... +. -.....++.|
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~----l~-----------~~~~~~l~~L 86 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADL----LE-----------DATQPGRVAL 86 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHH----HH-----------HHTSTTCCEE
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHH----Hh-----------cccccceeEE
Confidence 3456789999999999995444 4478994 44567899999999521100 00 0123567888
Q ss_pred eccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCC
Q 001238 104 VLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLT 183 (1117)
Q Consensus 104 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~ 183 (1117)
+|++|+++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+++++|++|+|++|++.
T Consensus 87 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 87 ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred EccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence 89999998 88888999999999999999998 89999999999999999999998 88999999999999999999888
Q ss_pred CCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCCcCC
Q 001238 184 DAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPEL 263 (1117)
Q Consensus 184 ~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l 263 (1117)
+.+|..++.. .++..+.++++|++|++++|.++ .+|..+
T Consensus 164 ~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-------------------------~lp~~l 202 (328)
T 4fcg_A 164 TELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-------------------------SLPASI 202 (328)
T ss_dssp CCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-------------------------CCCGGG
T ss_pred cccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-------------------------cchHhh
Confidence 8888766541 12223444444555554444444 344555
Q ss_pred CCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcce
Q 001238 264 GDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQE 343 (1117)
Q Consensus 264 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~ 343 (1117)
..+++|++|+|++|++++ +|..++++++|++|+|++|++.+.+|..|+.+++|++|+|++|.+.+.+|..+.++++|++
T Consensus 203 ~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred cCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 555566666666666663 4445666666666666666666666666666666666666666666666666666666666
Q ss_pred EecccccccCcccccccCCCCCcEEEecCcccc
Q 001238 344 LQLSVNQISGEIPAQIGNCQRLAQIELDNNQIT 376 (1117)
Q Consensus 344 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 376 (1117)
|+|++|.+.+.+|..++++++|+.+++..|.+.
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 666666666666666666666666666655544
No 281
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-34 Score=354.53 Aligned_cols=334 Identities=20% Similarity=0.221 Sum_probs=222.7
Q ss_pred CCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHH
Q 001238 314 CSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLF 393 (1117)
Q Consensus 314 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 393 (1117)
+++++.|++++|.++...+..|..+++|++|+|++|.|++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788888888888866666677788888888888888877777888888888888888888877777777777777777
Q ss_pred hccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccc
Q 001238 394 VWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTG 473 (1117)
Q Consensus 394 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 473 (1117)
|++|.+++..+..|.++++|++|+|++|.+++..|..+..+++|++|++++|++++. .++.+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 777777755555567777777777777777766666666677777777777776654 24445556666666665553
Q ss_pred cCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCC
Q 001238 474 FIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGS 553 (1117)
Q Consensus 474 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 553 (1117)
. ...++|+.|++++|.++...+ .+ .++|+.|+|++|.+++ . ..+..
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~------------------------~--~~l~~ 252 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD------------------------T--AWLLN 252 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC------------------------C--GGGGG
T ss_pred c-----cCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC------------------------C--hhhcc
Confidence 2 223455666666665553221 11 1345555555555553 2 33444
Q ss_pred CccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEE
Q 001238 554 LSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGIL 633 (1117)
Q Consensus 554 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~L 633 (1117)
+++|+.|+|++|.|.+..|..|..+++|+.|+|++|++++ +|..+..+++| +.|+|++|.++ .+|..+..+++|+.|
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL-KVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC-CEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC-cEEECCCCCCC-ccCcccccCCCCCEE
Confidence 5555555555555555555556666666666666666653 45555555555 56666666666 456666777888888
Q ss_pred eccCccccCCcchhhhcccceEEEeecccccCCCCCCcccccCCcccccCCCCCCcC
Q 001238 634 DLSHNELSGDLHFLAELQNLVVLNVSHNNFSGRVPDTPFFAKLPLSVLSGNPSLCFS 690 (1117)
Q Consensus 634 dLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~~c~~ 690 (1117)
||++|++++.. +..+++|+.|+|++|+|+|... ...+..+....+.+++..|+.
T Consensus 330 ~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 330 YLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp ECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCT
T ss_pred ECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCc
Confidence 88888887653 5567788888888888876532 234666777778899999975
No 282
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=2.7e-34 Score=330.20 Aligned_cols=197 Identities=21% Similarity=0.293 Sum_probs=168.6
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CC-cEEEEEEeecCCccchHHHHHHHHHHhccCCCC------cceEEeeeecCCc
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SG-LTVAVKRFRASDKISTGAFSSEIATLSRIRHRN------IVRLLGWGANRKT 846 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~n------iv~l~~~~~~~~~ 846 (1117)
.++|++.+.||+|+||+||+|... ++ +.||+|+++... ...+.+.+|++++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 357999999999999999999753 44 789999997532 34567889999999997765 8999999999999
Q ss_pred eEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEE---------------
Q 001238 847 KLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILL--------------- 911 (1117)
Q Consensus 847 ~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill--------------- 911 (1117)
.++||||+ ++++.+++..... ..+++.++..++.||++||+|||++ +|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~ 171 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNF-QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSC 171 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred EEEEEecc-CCChHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccc
Confidence 99999999 5566666654322 3489999999999999999999999 99999999999999
Q ss_pred ----cCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 912 ----GERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 912 ----~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 172 ~~~~~~~~~~kl~Dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 241 (355)
T 2eu9_A 172 EEKSVKNTSIRVADFGSATFDHEH-------HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 241 (355)
T ss_dssp CEEEESCCCEEECCCTTCEETTSC-------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cccccCCCcEEEeecCcccccccc-------ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence 66789999999999865432 2345799999999999999999999999999999999999999974
No 283
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=324.10 Aligned_cols=251 Identities=25% Similarity=0.363 Sum_probs=178.3
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc-c-hHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI-S-TGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~-~-~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
.++|++.+.||+|+||.||+|... +|+.||||++...... . .+.+.++..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 356888899999999999999864 6899999999765322 1 233445556788889999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhc-cCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHH-DCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
||+ ++.+..+.... .+.+++..+..++.|+++||+|||+ . +|+||||||+||+++.++.+||+|||+++....
T Consensus 104 e~~-~~~~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~ 177 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRM--QGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVD 177 (318)
T ss_dssp CCC-SEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred ecc-CCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence 999 55666555432 2348999999999999999999998 5 899999999999999999999999999976643
Q ss_pred CCCCccccCCccccccccCChhhhc-----cCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCC
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYAN-----MTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKD 1005 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1117)
.. ......||+.|+|||++. ...++.++||||||+++|||++|+.||.... .....+.........
T Consensus 178 ~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~~~~ 248 (318)
T 2dyl_A 178 DK-----AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK----TDFEVLTKVLQEEPP 248 (318)
T ss_dssp --------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC----SHHHHHHHHHHSCCC
T ss_pred Cc-----cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC----ccHHHHHHHhccCCC
Confidence 21 223457999999999984 5678899999999999999999999996421 122233333332211
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
.. +. ....+..+.+++.. |++.||.+||++.++++
T Consensus 249 ~~----~~-~~~~~~~l~~li~~------~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 249 LL----PG-HMGFSGDFQSFVKD------CLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CC----CS-SSCCCHHHHHHHHH------HTCSCTTTSCCHHHHTT
T ss_pred CC----Cc-cCCCCHHHHHHHHH------HccCChhHCcCHHHHhh
Confidence 10 11 11234455555555 99999999999999976
No 284
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=340.46 Aligned_cols=250 Identities=24% Similarity=0.355 Sum_probs=181.8
Q ss_pred cCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEEEEec
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.+|.+.+.||+|+||+||.....+|+.||||++..... ..+.+|+++++++ +|||||++++++.+.+..|+||||+
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~ 100 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC 100 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence 46888899999999997655555899999999975432 3467899999999 7999999999999999999999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC-----CCcceecccccccccc
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE-----RYESCLADFGLARLVE 929 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~-----~~~~kl~DfGla~~~~ 929 (1117)
+ |+|.+++..... ...+.++..++.||++||+|||++ +|+||||||+||+++. ...+||+|||+++...
T Consensus 101 ~-g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~ 174 (432)
T 3p23_A 101 A-ATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA 174 (432)
T ss_dssp S-EEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred C-CCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence 6 699999886542 244456678999999999999999 9999999999999953 3357799999998765
Q ss_pred CCCCCccccCCccccccccCChhhhc---cCCCCcCCCeeehhhhHHHHHh-CCCCCCCCCCCChhHHHHHHHHHhcCCC
Q 001238 930 DDSGGSFSANPQFAGSYGYIAPEYAN---MTKISEKSDVYSYGVVLLEIIT-GKKPVDASFPDGQHVIQWVRDHLKSKKD 1005 (1117)
Q Consensus 930 ~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~SlG~vl~ell~-g~~P~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1117)
.... .........||++|+|||++. ...++.++||||+||++|||++ |+.||..... ........ . .
T Consensus 175 ~~~~-~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~------~~~~~~~~-~-~ 245 (432)
T 3p23_A 175 VGRH-SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ------RQANILLG-A-C 245 (432)
T ss_dssp ------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT------HHHHHHTT-C-C
T ss_pred CCCc-ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH------HHHHHHhc-c-C
Confidence 4321 112334567999999999987 4667889999999999999999 9999854211 11111111 1 1
Q ss_pred CccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHH
Q 001238 1006 PVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAA 1051 (1117)
Q Consensus 1006 ~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~ 1051 (1117)
......+ ....+.... .++..|++.||++||++.++++
T Consensus 246 ~~~~~~~--~~~~~~~~~------~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 246 SLDCLHP--EKHEDVIAR------ELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp CCTTSCT--TCHHHHHHH------HHHHHHSCSSGGGSCCHHHHHT
T ss_pred CccccCc--cccccHHHH------HHHHHHHhCCHhhCCCHHHHHh
Confidence 1111110 001111223 3455699999999999999984
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=7.4e-35 Score=351.44 Aligned_cols=203 Identities=26% Similarity=0.393 Sum_probs=174.1
Q ss_pred hccCCCCCCeeeecCCeEEEEEEc-CCCcEEEEEEeecC-CccchHHHHHHHHHHhccCCCCcceEEeeeec------CC
Q 001238 774 ATRSLTAGNIIGQGRSGIVYKVTL-PSGLTVAVKRFRAS-DKISTGAFSSEIATLSRIRHRNIVRLLGWGAN------RK 845 (1117)
Q Consensus 774 ~~~~~~~~~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~------~~ 845 (1117)
..++|++.+.||+|+||+||+|.. .+|+.||||+++.. .....+++.+|++++++++||||+++++++.. .+
T Consensus 12 ~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 12 TCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp -----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 346899999999999999999975 46899999998754 33345678999999999999999999998765 66
Q ss_pred ceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCc---ceeccc
Q 001238 846 TKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYE---SCLADF 922 (1117)
Q Consensus 846 ~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~---~kl~Df 922 (1117)
..++||||+++|+|.+++........+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+||
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DF 168 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDL 168 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEccc
Confidence 7899999999999999998765444588999999999999999999999 9999999999999997765 899999
Q ss_pred cccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCC
Q 001238 923 GLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDA 984 (1117)
Q Consensus 923 Gla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~ 984 (1117)
|+++...... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||..
T Consensus 169 G~a~~~~~~~-----~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~ 225 (676)
T 3qa8_A 169 GYAKELDQGE-----LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP 225 (676)
T ss_dssp CCCCBTTSCC-----CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cccccccccc-----ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence 9998765432 22346799999999999999999999999999999999999999964
No 286
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=4.3e-34 Score=317.11 Aligned_cols=233 Identities=11% Similarity=0.064 Sum_probs=180.7
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCcc---chHHHHHHHHHHhccCCCCcceEEeeeecCCceEEEE
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDKI---STGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv~ 851 (1117)
++|++.+.||+|+||.||+|... +|+.||||++...... ..+.+.+|++++++++||||+++++++.+.+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 57999999999999999999864 5899999999765332 2367899999999999999999999999999999999
Q ss_pred EecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCC
Q 001238 852 DYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDD 931 (1117)
Q Consensus 852 e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~ 931 (1117)
||+++++|.++++.. ....++.+++.|+++||+|||++ +|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc--------
Confidence 999999999999643 35567889999999999999999 99999999999999999999997443
Q ss_pred CCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccC
Q 001238 932 SGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLD 1011 (1117)
Q Consensus 932 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1117)
|++ .++.++|||||||++|||++|+.||......... ..............
T Consensus 175 ----------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~--~~~~~~~~~~~~~~---- 225 (286)
T 3uqc_A 175 ----------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL--APAERDTAGQPIEP---- 225 (286)
T ss_dssp ----------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS--EECCBCTTSCBCCH----
T ss_pred ----------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh--HHHHHHhccCCCCh----
Confidence 333 3688999999999999999999999753221100 00000000000000
Q ss_pred cccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHHHHhhhcCC
Q 001238 1012 PKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRQEP 1060 (1117)
Q Consensus 1012 ~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~L~~~~~~~ 1060 (1117)
.......+..+.+++.. |++.||++| |+.++++.|+++....
T Consensus 226 ~~~~~~~~~~l~~li~~------~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 226 ADIDRDIPFQISAVAAR------SVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp HHHCTTSCHHHHHHHHH------HHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred hhcccCCCHHHHHHHHH------HcccCCccC-CHHHHHHHHHHHhccC
Confidence 01122334455555554 999999999 9999999999987543
No 287
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=4.8e-34 Score=334.05 Aligned_cols=244 Identities=18% Similarity=0.227 Sum_probs=178.0
Q ss_pred HhccCCCCCCeeeecCCeEEEEEE-cCCCcEEEEEEeecCCc---cchHHHHHHHHHHhccCC-CCcce-----------
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVT-LPSGLTVAVKRFRASDK---ISTGAFSSEIATLSRIRH-RNIVR----------- 836 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~-~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~H-~niv~----------- 836 (1117)
..++.|+..+.||+|+||+||+|. ..+|+.||||+++.... ...+.+.+|+.+++.++| +|...
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~ 154 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF 154 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCC
T ss_pred CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccch
Confidence 445567888999999999999998 45799999999874322 235779999999999987 32211
Q ss_pred ----------EEeeeec-----CCceEEEEEecCCCChhhhhcC----CCCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 001238 837 ----------LLGWGAN-----RKTKLLFYDYMPNGTLGMLLHD----GECAGLLEWDTRFKIALGVAEGLSYLHHDCVP 897 (1117)
Q Consensus 837 ----------l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~----~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~ 897 (1117)
+..++.. ....+++|+++ +++|.+++.. ....+.+++..+..++.|+++||+|||++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~--- 230 (413)
T 3dzo_A 155 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY--- 230 (413)
T ss_dssp EEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence 1111111 12346677765 7899988842 11223478899999999999999999999
Q ss_pred ceeeeccccCeEEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhh----------ccCCCCcCCCeee
Q 001238 898 AILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYA----------NMTKISEKSDVYS 967 (1117)
Q Consensus 898 ~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~S 967 (1117)
+|+||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ ....++.++||||
T Consensus 231 ~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwS 302 (413)
T 3dzo_A 231 GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWT 302 (413)
T ss_dssp TEECSCCCGGGEEECTTCCEEECCGGGCEETTEE-------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHH
T ss_pred CcccCCcccceEEEecCCeEEEEeccceeecCCc-------cccCCC-CceeCchhhhccccccccccCcCCCchhhHHH
Confidence 9999999999999999999999999999865431 334567 999999998 5556889999999
Q ss_pred hhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHH
Q 001238 968 YGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMK 1047 (1117)
Q Consensus 968 lG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~ 1047 (1117)
|||++|||++|+.||....... ....+-+.. ...+..+.+++.. |++.||++||++.
T Consensus 303 lGvil~elltg~~Pf~~~~~~~----------------~~~~~~~~~-~~~~~~~~~li~~------~l~~dP~~Rpt~~ 359 (413)
T 3dzo_A 303 LGLAIYWIWCADLPNTDDAALG----------------GSEWIFRSC-KNIPQPVRALLEG------FLRYPKEDRLLPL 359 (413)
T ss_dssp HHHHHHHHHHSSCCCCTTGGGS----------------CSGGGGSSC-CCCCHHHHHHHHH------HTCSSGGGSCCHH
T ss_pred HHHHHHHHHHCCCCCCCcchhh----------------hHHHHHhhc-ccCCHHHHHHHHH------HccCChhhCcCHH
Confidence 9999999999999996531110 000000111 1233455555554 9999999999977
Q ss_pred HHHH
Q 001238 1048 DVAA 1051 (1117)
Q Consensus 1048 ~v~~ 1051 (1117)
++++
T Consensus 360 ~~l~ 363 (413)
T 3dzo_A 360 QAME 363 (413)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7643
No 288
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.5e-33 Score=317.14 Aligned_cols=307 Identities=24% Similarity=0.416 Sum_probs=151.0
Q ss_pred cccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCC
Q 001238 239 LGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLS 318 (1117)
Q Consensus 239 l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 318 (1117)
+..+++|+.|++.++.+.. ++ .+..+++|++|++++|++++ ++. +.++++|++|++++|.+++. +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 3455556666665555543 22 25555555555555555553 222 55555555555555555532 2455555555
Q ss_pred EEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhcccc
Q 001238 319 IIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNR 398 (1117)
Q Consensus 319 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 398 (1117)
+|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +.
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~-------------- 174 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IA-------------- 174 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GG--------------
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hc--------------
Confidence 555555555532 22 5555555555555554332222 25555555555555555543222 33
Q ss_pred ccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCC
Q 001238 399 LEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPE 478 (1117)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 478 (1117)
.+++|++|++++|.+++ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+
T Consensus 175 ----------~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 175 ----------NLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp ----------GCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred ----------cCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 44444444444444442 222 4444445555555554443322 4444455555555555543322
Q ss_pred cCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCcccc
Q 001238 479 IGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLT 558 (1117)
Q Consensus 479 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 558 (1117)
+..+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+..|..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44555555555555555432 2344555555555555555533 2344445555555555555444444445555555
Q ss_pred EEeccccccCCCCCcccccccceeEEeccccccc
Q 001238 559 KLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLS 592 (1117)
Q Consensus 559 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1117)
.|++++|++++..| +..+++|+.||+++|.|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555555554443 555566666666666554
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-32 Score=313.73 Aligned_cols=309 Identities=22% Similarity=0.361 Sum_probs=217.3
Q ss_pred ccccccccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCC
Q 001238 213 HEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKN 292 (1117)
Q Consensus 213 ~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 292 (1117)
..+..+++|+.|+++++.+... | .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ +| .+.++++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTT
T ss_pred ccchhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCc
Confidence 3456889999999999999764 3 48999999999999999886444 9999999999999999995 44 6999999
Q ss_pred CcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecC
Q 001238 293 LVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDN 372 (1117)
Q Consensus 293 L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 372 (1117)
|++|++++|.+.+. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 112 L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 99999999999964 33 89999999999999977655554 8999999999999999986554 88999999999999
Q ss_pred ccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCC
Q 001238 373 NQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIP 452 (1117)
Q Consensus 373 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 452 (1117)
|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++. +. +..+++|++|++++|++++.
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--
Confidence 99985433 6666666666666666664433 55556666666666666532 22 44555555555555555432
Q ss_pred CCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccc
Q 001238 453 PEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVR 532 (1117)
Q Consensus 453 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 532 (1117)
+ .+..+++|++|++++|++++. ..+..+++|++|++++|.+.+..+..|..+++
T Consensus 259 ~------------------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 259 N------------------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp G------------------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred h------------------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 2 344455555555555555532 23555555555555555555555555555555
Q ss_pred cccccccCCcCCCCCCCCcCCCccccEEeccccccC
Q 001238 533 LQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFA 568 (1117)
Q Consensus 533 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 568 (1117)
|+.|++++|+++++.+ +..+++|+.|++++|.|+
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5555555555555444 555556666666666553
No 290
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.6e-34 Score=355.27 Aligned_cols=238 Identities=21% Similarity=0.295 Sum_probs=187.6
Q ss_pred cCCCCCCeeeecCCeEEEEEEcC--CCcEEEEEEeecCC-ccchHHHHHHHHHHhccCCCCcceEEeeeecCCc-----e
Q 001238 776 RSLTAGNIIGQGRSGIVYKVTLP--SGLTVAVKRFRASD-KISTGAFSSEIATLSRIRHRNIVRLLGWGANRKT-----K 847 (1117)
Q Consensus 776 ~~~~~~~~lg~G~fg~Vy~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~-----~ 847 (1117)
++|++.+.||+|+||+||+|.+. +|+.||||++.... ......+.+|++++++++|||||++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 57999999999999999999864 68999999986542 3344578899999999999999999999987665 6
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
|+||||+++++|.+++.. .+++.+++.++.||++||+|||++ +||||||||+||+++.+ .+||+|||+++.
T Consensus 160 ~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~ 230 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSR 230 (681)
T ss_dssp EEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred EEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchh
Confidence 999999999999987754 389999999999999999999999 99999999999999986 899999999987
Q ss_pred ccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCCCCc
Q 001238 928 VEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKKDPV 1007 (1117)
Q Consensus 928 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1117)
.... ....||++|+|||++.+. ++.++|||||||++|||++|..||........ +
T Consensus 231 ~~~~--------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~---------------~- 285 (681)
T 2pzi_A 231 INSF--------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGL---------------P- 285 (681)
T ss_dssp TTCC--------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSSC---------------C-
T ss_pred cccC--------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccccc---------------c-
Confidence 6432 345799999999998765 48899999999999999999998864211100 0
Q ss_pred cccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCC-CHHHHHHHHHhh
Q 001238 1008 EVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRP-TMKDVAALLREI 1056 (1117)
Q Consensus 1008 ~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RP-s~~~v~~~L~~~ 1056 (1117)
. ..+.. .....+. .++..|++.||++|| +++++.+.+..+
T Consensus 286 ~-~~~~~--~~~~~l~------~li~~~l~~dP~~R~~~~~~l~~~l~~~ 326 (681)
T 2pzi_A 286 E-DDPVL--KTYDSYG------RLLRRAIDPDPRQRFTTAEEMSAQLTGV 326 (681)
T ss_dssp T-TCHHH--HHCHHHH------HHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred c-ccccc--ccCHHHH------HHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence 0 00000 0011233 345559999999999 566677766654
No 291
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.3e-32 Score=308.60 Aligned_cols=294 Identities=20% Similarity=0.278 Sum_probs=189.5
Q ss_pred CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecc
Q 001238 268 ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLS 347 (1117)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 347 (1117)
+++.++++++.++ .+|..+. ++|+.|++++|++.+..|..|.++++|++|+|++|++++..|..|+++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777777777777 5666553 577777887777777666777777778888887777777667777777777777777
Q ss_pred cccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhcccccc--ccCCCCCCcccccceeecccccccC
Q 001238 348 VNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLE--GEIPPSISNCQNLEAVDLSQNGLTG 425 (1117)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~ 425 (1117)
+|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|.++ +..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77777 4444443 67777777777777655556677777777777777764 2555566666 77777777777764
Q ss_pred CCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCccccc
Q 001238 426 PIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITG 505 (1117)
Q Consensus 426 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 505 (1117)
+|..+. ++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 554443 46666666666666655556666666666666666666555555556666666666666665 45555555
Q ss_pred CCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccC--CCCCcccccccceeE
Q 001238 506 CRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFA--GSIPSQLGSCVKLQL 583 (1117)
Q Consensus 506 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~ 583 (1117)
+++|++|++++|+|++..+..|..... -....+|+.|++++|.+. +..|.+|..+++|+.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGF------------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSC------------------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred CccCCEEECCCCCCCccChhHcccccc------------------ccccccccceEeecCcccccccCcccccccchhhh
Confidence 555555555555555444433322100 001356777777777776 566777878888888
Q ss_pred Eeccccc
Q 001238 584 LDLSSNQ 590 (1117)
Q Consensus 584 L~Ls~N~ 590 (1117)
|++++|+
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 8888775
No 292
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-33 Score=314.96 Aligned_cols=258 Identities=30% Similarity=0.474 Sum_probs=179.1
Q ss_pred cccceeecccccccC--CCcccccCCCCCCeeeccC-ccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCE
Q 001238 411 QNLEAVDLSQNGLTG--PIPRGIFQLKKLNKLLLLS-NNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNF 487 (1117)
Q Consensus 411 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 487 (1117)
.+++.|+|++|.+++ .+|..+.++++|++|++++ |++.+.+|..|+++++|++|++++|++++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456677777777766 5666666666666666663 6666666666666666666666666666666666666666666
Q ss_pred EEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEecccccc
Q 001238 488 LDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRF 567 (1117)
Q Consensus 488 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l 567 (1117)
|+|++|++++.+|..|..+++|++|+|++|+|++.+|..+..+. ++|+.|++++|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----------------------~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-----------------------KLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----------------------TTCCEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-----------------------hcCcEEECcCCee
Confidence 66666666666666666666666666666666655555555444 0455555555555
Q ss_pred CCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch-
Q 001238 568 AGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF- 646 (1117)
Q Consensus 568 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~- 646 (1117)
++.+|..|..+. |+.|+|++|++++.+|..+..++.+ +.|+|++|++++.+|. +..+++|+.|||++|++++.+|.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC-SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC-CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 555555555554 6666666666666666666666666 5666666666655555 67788899999999999876654
Q ss_pred hhhcccceEEEeecccccCCCCCCcccccCCcccccCCCCCCcCC-CCC
Q 001238 647 LAELQNLVVLNVSHNNFSGRVPDTPFFAKLPLSVLSGNPSLCFSG-NQC 694 (1117)
Q Consensus 647 l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~~c~~~-~~c 694 (1117)
+..+++|+.|+|++|+++|.+|....+.++....+.+||++||.+ ..|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred HhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 888999999999999999999988888999999999999999853 345
No 293
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.9e-32 Score=308.14 Aligned_cols=294 Identities=21% Similarity=0.271 Sum_probs=195.3
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEec
Q 001238 292 NLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELD 371 (1117)
Q Consensus 292 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 371 (1117)
+++.++++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6888888888887 5666553 688888888888887777788888888888888888887778888888888888888
Q ss_pred CccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccC--CCcccccCCCCCCeeeccCccCCC
Q 001238 372 NNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTG--PIPRGIFQLKKLNKLLLLSNNLSG 449 (1117)
Q Consensus 372 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~ 449 (1117)
+|+++ .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|.++. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 88888 4454433 567777777777765555556667777777777776642 445555555 66666666666664
Q ss_pred CCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhc
Q 001238 450 VIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQ 529 (1117)
Q Consensus 450 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 529 (1117)
+|..+. ++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+|+ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 333332 45666666666666555556666666666666666666555555666666666666666665 34444555
Q ss_pred ccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccc--cccccccCCchhHHH
Q 001238 530 LVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLS--GNIPASLGKIPALAI 607 (1117)
Q Consensus 530 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~l~~ 607 (1117)
+++|+.|++++|+|++++...|.... + -.....|+.|++++|.++ +..|..+..++.+ +
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~----------------~--~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L-~ 323 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVG----------------F--GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR-L 323 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSS----------------C--CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS-T
T ss_pred CccCCEEECCCCCCCccChhHccccc----------------c--ccccccccceEeecCcccccccCcccccccchh-h
Confidence 55555555555555544443333210 0 011467999999999998 6778888889988 7
Q ss_pred hhcCCCCc
Q 001238 608 ALNLSWNQ 615 (1117)
Q Consensus 608 ~L~Ls~N~ 615 (1117)
.+++++|+
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 89999885
No 294
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.98 E-value=1.2e-33 Score=322.23 Aligned_cols=191 Identities=17% Similarity=0.136 Sum_probs=160.1
Q ss_pred ccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCC--------ccchHHHHHHHHHHhccC---------CCCcceE
Q 001238 775 TRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASD--------KISTGAFSSEIATLSRIR---------HRNIVRL 837 (1117)
Q Consensus 775 ~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------H~niv~l 837 (1117)
.++|++.+.||+|+||+||+|+. +|+.||||++.... ....+.+.+|++++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 35788999999999999999988 78999999997642 223367899999999886 6666665
Q ss_pred Eee-----------------eec-------------CCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHH
Q 001238 838 LGW-----------------GAN-------------RKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEG 887 (1117)
Q Consensus 838 ~~~-----------------~~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~ 887 (1117)
.+. +.+ .+..|+||||+++|++.+.+.+ +.+++.+++.++.||+.|
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~----~~~~~~~~~~i~~qi~~a 173 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT----KLSSLATAKSILHQLTAS 173 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT----TCCCHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh----cCCCHHHHHHHHHHHHHH
Confidence 554 333 6789999999999976666643 238999999999999999
Q ss_pred HHHHh-ccCCCceeeeccccCeEEEcCCC--------------------cceeccccccccccCCCCCccccCCcccccc
Q 001238 888 LSYLH-HDCVPAILHRDVKSHNILLGERY--------------------ESCLADFGLARLVEDDSGGSFSANPQFAGSY 946 (1117)
Q Consensus 888 L~~LH-~~~~~~ivHrDlkp~Nill~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~ 946 (1117)
|+||| ++ +|+||||||+|||++.++ .+||+|||+|+.... ...+||+
T Consensus 174 L~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~---------~~~~gt~ 241 (336)
T 2vuw_A 174 LAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD---------GIVVFCD 241 (336)
T ss_dssp HHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET---------TEEECCC
T ss_pred HHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC---------CcEEEee
Confidence 99999 88 999999999999999887 899999999987653 1347999
Q ss_pred ccCChhhhccCCCCcCCCeeehhhh-HHHHHhCCCCCC
Q 001238 947 GYIAPEYANMTKISEKSDVYSYGVV-LLEIITGKKPVD 983 (1117)
Q Consensus 947 ~y~aPE~~~~~~~~~~~Dv~SlG~v-l~ell~g~~P~~ 983 (1117)
.|+|||++.+.. +.++||||+|++ .+++++|..||.
T Consensus 242 ~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 242 VSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp CTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred cccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence 999999998666 899999998777 778889999984
No 295
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.98 E-value=1.2e-32 Score=308.19 Aligned_cols=232 Identities=19% Similarity=0.237 Sum_probs=175.1
Q ss_pred ccCCCCC-CeeeecCCeEEEEEEc-CCCcEEEEEEeecCCccchHHHHHHHHHH-hccCCCCcceEEeeeec----CCce
Q 001238 775 TRSLTAG-NIIGQGRSGIVYKVTL-PSGLTVAVKRFRASDKISTGAFSSEIATL-SRIRHRNIVRLLGWGAN----RKTK 847 (1117)
Q Consensus 775 ~~~~~~~-~~lg~G~fg~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~H~niv~l~~~~~~----~~~~ 847 (1117)
.++|.+. +.||+|+||.||+|.. .+++.||+|+++. ...+.+|++++ +..+||||+++++++.. ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3456666 7899999999999975 5689999999864 24678899988 55589999999999876 6678
Q ss_pred EEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcC---CCcceeccccc
Q 001238 848 LLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGE---RYESCLADFGL 924 (1117)
Q Consensus 848 ~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~---~~~~kl~DfGl 924 (1117)
++||||+++|+|.+++..... ..+++.++..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 999999999999999987532 3489999999999999999999999 9999999999999998 78899999999
Q ss_pred cccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCCCCCCCChhHHHHHHHHHhcCC
Q 001238 925 ARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVDASFPDGQHVIQWVRDHLKSKK 1004 (1117)
Q Consensus 925 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1117)
++... ...++.++||||+||++|||++|+.||....... ..........
T Consensus 167 a~~~~--------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~-----~~~~~~~~~~ 215 (299)
T 3m2w_A 167 AKETT--------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-----ISPGMKTRIR 215 (299)
T ss_dssp CEECT--------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC------------CCSCCSSC
T ss_pred ccccc--------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh-----hhHHHHHHHh
Confidence 97542 1346788999999999999999999996431110 0000000000
Q ss_pred CCccccCcccCCCCchhHHHHHHHHhHhhhccCCCCCCCCCHHHHHHH
Q 001238 1005 DPVEVLDPKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAAL 1052 (1117)
Q Consensus 1005 ~~~~~~~~~l~~~~~~~~~~~l~~~~i~~~C~~~~p~~RPs~~~v~~~ 1052 (1117)
..............+..+.+++.. |++.||++||++.++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~li~~------~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 216 MGQYEFPNPEWSEVSEEVKMLIRN------LLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp TTCCSSCHHHHTTSCHHHHHHHHH------HTCSSTTTSCCHHHHHTS
T ss_pred hccccCCchhcccCCHHHHHHHHH------HcccChhhCCCHHHHhcC
Confidence 000000000012234445555554 999999999999999873
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=9.4e-32 Score=305.61 Aligned_cols=289 Identities=21% Similarity=0.305 Sum_probs=145.7
Q ss_pred CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecc
Q 001238 268 ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLS 347 (1117)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 347 (1117)
+++.++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555 3444332 355555555555555444455555555555555555555445555555555555555
Q ss_pred cccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccc--cCCCCCCcccccceeecccccccC
Q 001238 348 VNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEG--EIPPSISNCQNLEAVDLSQNGLTG 425 (1117)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~ 425 (1117)
+|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 55555 3333332 455555555555554444444444444444444444432 334445555555555555555552
Q ss_pred CCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCccccc
Q 001238 426 PIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITG 505 (1117)
Q Consensus 426 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 505 (1117)
+|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 333332 44445555555444444444444444444444444444444444444444444444444444 33444444
Q ss_pred CCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCC------CccccEEeccccccCC--CCCccccc
Q 001238 506 CRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGS------LSSLTKLVLNKNRFAG--SIPSQLGS 577 (1117)
Q Consensus 506 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------l~~L~~L~L~~N~l~~--~~~~~~~~ 577 (1117)
+++|++|++++|+|+ +++...|.. ...++.|++++|.+.. ..|..|..
T Consensus 262 l~~L~~L~l~~N~i~------------------------~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 262 HKYIQVVYLHNNNIS------------------------AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp CSSCCEEECCSSCCC------------------------CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCcCEEECCCCcCC------------------------ccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 444444444444444 444333332 2566677777777652 55667777
Q ss_pred ccceeEEeccccc
Q 001238 578 CVKLQLLDLSSNQ 590 (1117)
Q Consensus 578 l~~L~~L~Ls~N~ 590 (1117)
+..++.++|++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 7778888887774
No 297
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.8e-31 Score=299.06 Aligned_cols=289 Identities=21% Similarity=0.294 Sum_probs=230.3
Q ss_pred ccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcC
Q 001238 244 RLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDIS 323 (1117)
Q Consensus 244 ~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs 323 (1117)
+++.++++++.+. .+|..+. +.|++|+|++|++++..+..|+++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4455555555544 3454443 578888888888887666678888888888888888887778888888888888888
Q ss_pred CCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccC--CCCcccccccchHHHHhccccccc
Q 001238 324 MNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITG--AIPSEFGNLSNLTLLFVWHNRLEG 401 (1117)
Q Consensus 324 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~ 401 (1117)
+|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++. ..+..|.++++|+.|++++|+++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 88888 4565554 688888888888887777778888888888888888853 667788888888999999888884
Q ss_pred cCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCC
Q 001238 402 EIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGN 481 (1117)
Q Consensus 402 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 481 (1117)
+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 555443 78999999999999877888999999999999999999888889999999999999999999 67888999
Q ss_pred CCCCCEEEccCCcCCCCCCcccccC------CCCceEEccCCcccc--ccchhhhcccccccccccCCc
Q 001238 482 LKNLNFLDLGSNRLTGSIPDEITGC------RNLTFLDVHSNSIAG--NLPAGLHQLVRLQFADLSDNS 542 (1117)
Q Consensus 482 l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 542 (1117)
+++|++|+|++|+|++..+..|... +.|+.|++++|.+.. +.|..|..+..++.+++++|+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999998777777543 678888888888763 455666666677766666663
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.8e-34 Score=344.37 Aligned_cols=266 Identities=20% Similarity=0.178 Sum_probs=132.7
Q ss_pred CcCCCCCCCCcEEecCCCccCCcCCccCC-----CCCCCcEEEccCCcCcccC----CcCCCCCCCCCEEEcCCCcCCCC
Q 001238 260 PPELGDCTELQYIYLYENALTGSIPSKLG-----NLKNLVNLFLWQNNLVGII----PPELGNCSQLSIIDISMNSLTGS 330 (1117)
Q Consensus 260 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~LdLs~N~l~~~ 330 (1117)
+..+..+++|++|+|++|.+++..+..+. ..++|++|++++|++++.. +..+..+++|++|++++|.++..
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 44455566667777777766543333221 2445666666666665422 33344455666666666665533
Q ss_pred CccccC-----CCCCcceEecccccccCc----ccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccc
Q 001238 331 IPQTLG-----NLTSLQELQLSVNQISGE----IPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEG 401 (1117)
Q Consensus 331 ~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 401 (1117)
.+..+. ..++|++|+|++|.+++. ++..+..+++|++|++++|.+++.....+
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l------------------ 247 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL------------------ 247 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH------------------
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH------------------
Confidence 332222 234556666666655542 34445555555555555555542110000
Q ss_pred cCCCCCCcccccceeecccccccCC----CcccccCCCCCCeeeccCccCCCCCCCCccc-----ccccceeccCCCccc
Q 001238 402 EIPPSISNCQNLEAVDLSQNGLTGP----IPRGIFQLKKLNKLLLLSNNLSGVIPPEMGN-----CSSLIRFRANSNKLT 472 (1117)
Q Consensus 402 ~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~l~ 472 (1117)
.+..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+....+..+.. .++|++|++++|.++
T Consensus 248 -~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 248 -CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp -HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred -HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 011122345666666666666532 3444455566666666666554332222221 135555555555555
Q ss_pred cc----CCCCcCCCCCCCEEEccCCcCCCCCCccccc-----CCCCceEEccCCcccc----ccchhhhccccccccccc
Q 001238 473 GF----IPPEIGNLKNLNFLDLGSNRLTGSIPDEITG-----CRNLTFLDVHSNSIAG----NLPAGLHQLVRLQFADLS 539 (1117)
Q Consensus 473 ~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls 539 (1117)
+. ++..+..+++|++|+|++|++++..+..+.. .++|++|+|++|.|++ .+|..+..+++|+.|+++
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 33 2334444555666666666555433333332 4456666666666554 445555555555555555
Q ss_pred CCcCC
Q 001238 540 DNSVG 544 (1117)
Q Consensus 540 ~N~i~ 544 (1117)
+|+|+
T Consensus 407 ~N~i~ 411 (461)
T 1z7x_W 407 NNCLG 411 (461)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 55444
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.5e-35 Score=348.83 Aligned_cols=239 Identities=21% Similarity=0.125 Sum_probs=122.1
Q ss_pred CCcccccceeecccccccCCCccccc-----CCCCCCeeeccCccCCCC----CCCCcccccccceeccCCCcccccC--
Q 001238 407 ISNCQNLEAVDLSQNGLTGPIPRGIF-----QLKKLNKLLLLSNNLSGV----IPPEMGNCSSLIRFRANSNKLTGFI-- 475 (1117)
Q Consensus 407 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~-- 475 (1117)
+..+++|++|+|++|.++...+..+. ..++|++|++++|+++.. ++..+..+++|++|++++|++++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 33445555555555555432222222 133555555555555542 2334444555555555555554321
Q ss_pred ---CCCcCCCCCCCEEEccCCcCCCC----CCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCC
Q 001238 476 ---PPEIGNLKNLNFLDLGSNRLTGS----IPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLS 548 (1117)
Q Consensus 476 ---~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 548 (1117)
+..+..+++|++|+|++|++++. ++..+..+++|++|++++|.+.+..+..+...
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------------ 307 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET------------------ 307 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH------------------
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH------------------
Confidence 12222455566666666665532 34445555566666666665554333333322
Q ss_pred CCcCCCccccEEeccccccCCC----CCcccccccceeEEeccccccccccccccCC-----chhHHHhhcCCCCcccC-
Q 001238 549 PDLGSLSSLTKLVLNKNRFAGS----IPSQLGSCVKLQLLDLSSNQLSGNIPASLGK-----IPALAIALNLSWNQICG- 618 (1117)
Q Consensus 549 ~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~l~~~L~Ls~N~l~~- 618 (1117)
.....++|+.|++++|.+++. ++..+..+++|+.|||++|++++..+..+.. .+.+ +.|+|++|++++
T Consensus 308 -l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~i~~~ 385 (461)
T 1z7x_W 308 -LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL-RVLWLADCDVSDS 385 (461)
T ss_dssp -HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCCHH
T ss_pred -hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCce-EEEECCCCCCChh
Confidence 001113455555555555433 2334445566666666666665443333321 2334 556666666664
Q ss_pred ---CccccccCCCCccEEeccCccccCCc-chhh-----hcccceEEEeecccccC
Q 001238 619 ---ELPAELTGLNKLGILDLSHNELSGDL-HFLA-----ELQNLVVLNVSHNNFSG 665 (1117)
Q Consensus 619 ---~~p~~l~~l~~L~~LdLs~N~l~~~~-~~l~-----~l~~L~~L~ls~N~l~~ 665 (1117)
.+|..+..+++|+.|||++|++++.. ..+. ....|+.|++.+|.+..
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred hHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 56677777788888888888877532 1111 12347777777766653
No 300
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.2e-29 Score=282.86 Aligned_cols=283 Identities=22% Similarity=0.244 Sum_probs=188.9
Q ss_pred CCcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCC--CC
Q 001238 61 TPCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTG--EI 138 (1117)
Q Consensus 61 ~~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~ 138 (1117)
+.|.|++|.|+..+ + ..+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++. .+
T Consensus 5 C~C~~~~l~c~~~~-----------l-~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 5 CSCSGTEIRCNSKG-----------L-TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp CEEETTEEECCSSC-----------C-SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred CeeCCCEEEcCCCC-----------c-ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 34899999997433 1 23555443 578899999999984333447899999999999999873 33
Q ss_pred chhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCc-ccccCcccchhhhccCCCCCCCCCCccccc
Q 001238 139 PRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIP-ATIGKLKNLEAIRAGGNKNLGGSLPHEIGN 217 (1117)
Q Consensus 139 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~ 217 (1117)
|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|++++..+ ..+..++
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~----------------------- 126 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR----------------------- 126 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-----------------------
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc-----------------------
Confidence 677777888888888888887 677778888888888888888775322 2233333
Q ss_pred cccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCC-cCCccCCCCCCCcEE
Q 001238 218 CTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTG-SIPSKLGNLKNLVNL 296 (1117)
Q Consensus 218 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L 296 (1117)
+|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|++|
T Consensus 127 --------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 127 --------------------------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp --------------------------TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred --------------------------CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 33333333333444455556666777777777777765 466677777777777
Q ss_pred EccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCC-CCcEEEecCccc
Q 001238 297 FLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQ-RLAQIELDNNQI 375 (1117)
Q Consensus 297 ~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l 375 (1117)
++++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..+..++ +|++|++++|.+
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 7777777766677777777777777777777766666677777777777777777777777777763 777777777777
Q ss_pred cCCCCc-c-cccccchHHHHhccccccccCCCCC
Q 001238 376 TGAIPS-E-FGNLSNLTLLFVWHNRLEGEIPPSI 407 (1117)
Q Consensus 376 ~~~~p~-~-~~~l~~L~~L~L~~N~l~~~~~~~~ 407 (1117)
++..+. + ...+...+.+.+..+.+....|..+
T Consensus 261 ~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 261 ACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp ECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred ecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 643211 1 1223333444444444444444443
No 301
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.4e-33 Score=341.47 Aligned_cols=450 Identities=13% Similarity=0.100 Sum_probs=269.1
Q ss_pred CcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeEeccCCCC---CCCchhhh------------cccccCcE
Q 001238 62 PCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNL---TGSIPKEI------------ASLNQLNY 126 (1117)
Q Consensus 62 ~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~p~~~------------~~l~~L~~ 126 (1117)
|++|++|.+....++ .+ .. ......+..+..+++|++|+|+++.. .+.+|..+ ..+++|++
T Consensus 41 ck~W~~~~~~~~~~l-~~--~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 116 (592)
T 3ogk_B 41 CRRWFKIDSETREHV-TM--AL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116 (592)
T ss_dssp CHHHHHHHHHHCCEE-EE--SC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred hHHHHHhhhccccEE-EE--ee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCe
Confidence 447999865432222 22 11 12223344566788899999987432 12333322 27899999
Q ss_pred eeccCCCcCCCCchhhhhh--hhhhhhhccCCC-cCC-CCchhccCCcCCcEEeccCCCCCCC----CcccccCcccchh
Q 001238 127 LDLSENSLTGEIPRELCSL--LRLEQLRLNSNQ-LEG-AIPIQIGNLSSLTQLFLYDNQLTDA----IPATIGKLKNLEA 198 (1117)
Q Consensus 127 L~Ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~-l~~-~~p~~~~~L~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~ 198 (1117)
|+|++|.+++..+..+..+ .+|++|+|++|. ++. .++..+.++++|++|+|++|.+++. ++..+..+++|++
T Consensus 117 L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~ 196 (592)
T 3ogk_B 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196 (592)
T ss_dssp EEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCE
T ss_pred EEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccE
Confidence 9999999987777777774 459999999887 221 2344455789999999999998765 3334455666777
Q ss_pred hhccCCCCC---CCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecC
Q 001238 199 IRAGGNKNL---GGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLY 275 (1117)
Q Consensus 199 L~l~~n~~~---~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~ 275 (1117)
|++++|... .+.++..+.++++|+.| ++.+|.+.+ +|..+..+++|++|+++
T Consensus 197 L~L~~n~~~~~~~~~l~~~~~~~~~L~~L------------------------~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 197 LNFYMTEFAKISPKDLETIARNCRSLVSV------------------------KVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp EECTTCCCSSCCHHHHHHHHHHCTTCCEE------------------------ECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred EEeeccCCCccCHHHHHHHHhhCCCCcEE------------------------eccCccHHH-HHHHHhhhhHHHhhccc
Confidence 777666531 01222223344444444 444444433 33444555555555554
Q ss_pred CCccC---CcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCc-cccCCCCCcceEecccccc
Q 001238 276 ENALT---GSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIP-QTLGNLTSLQELQLSVNQI 351 (1117)
Q Consensus 276 ~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l 351 (1117)
.+... +..+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+++... ..+..+++|++|+++++..
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~ 330 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred ccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC
Confidence 32221 223344555666666666654322 445555566666666666666553322 2345666666666663322
Q ss_pred cCcccccccCCCCCcEEEec-----------CccccCCCC-cccccccchHHHHhccccccccCCCCCCc-ccccceeec
Q 001238 352 SGEIPAQIGNCQRLAQIELD-----------NNQITGAIP-SEFGNLSNLTLLFVWHNRLEGEIPPSISN-CQNLEAVDL 418 (1117)
Q Consensus 352 ~~~~p~~~~~l~~L~~L~L~-----------~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L 418 (1117)
.+.++..+..+++|++|+++ .|.+++... ..+..+++|++|+++.|++++..+..+.. +++|+.|++
T Consensus 331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence 22333334456667777776 244443211 12334666777777667666655544543 677888888
Q ss_pred c----cccccCC-----CcccccCCCCCCeeeccCc--cCCCCCCCCcc-cccccceeccCCCcccc-cCCCCcCCCCCC
Q 001238 419 S----QNGLTGP-----IPRGIFQLKKLNKLLLLSN--NLSGVIPPEMG-NCSSLIRFRANSNKLTG-FIPPEIGNLKNL 485 (1117)
Q Consensus 419 s----~N~l~~~-----~p~~~~~l~~L~~L~L~~N--~l~~~~~~~~~-~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L 485 (1117)
+ .|.+++. ++..+..+++|++|++++| .+++..+..+. .+++|++|++++|++++ .++..+..+++|
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTC
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCccc
Confidence 5 6667642 3333556788888888743 35544444443 37788888998888876 334456778999
Q ss_pred CEEEccCCcCCCC-CCcccccCCCCceEEccCCccccccchhhh-cccccccccccCC
Q 001238 486 NFLDLGSNRLTGS-IPDEITGCRNLTFLDVHSNSIAGNLPAGLH-QLVRLQFADLSDN 541 (1117)
Q Consensus 486 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N 541 (1117)
++|+|++|.+++. ++..+..+++|++|+|++|++++.....+. .++.+....+..+
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9999999998754 334456789999999999998865433333 4565555544443
No 302
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2e-28 Score=275.05 Aligned_cols=249 Identities=22% Similarity=0.257 Sum_probs=207.2
Q ss_pred cEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCC--CccccCCCCCcceEecc
Q 001238 270 QYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGS--IPQTLGNLTSLQELQLS 347 (1117)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~--~p~~l~~l~~L~~L~Ls 347 (1117)
+.++++++.++ .+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++.. .|..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46788888887 5676554 6888888888888855555678888899999998888733 25667778889999999
Q ss_pred cccccCcccccccCCCCCcEEEecCccccCCCC-cccccccchHHHHhccccccccCCCCCCcccccceeecccccccC-
Q 001238 348 VNQISGEIPAQIGNCQRLAQIELDNNQITGAIP-SEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTG- 425 (1117)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 425 (1117)
+|.++ .+|..+..+++|++|++++|++++..+ ..|..+++|++|++++|++.+..+..+..+++|++|+|++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99888 567778888899999999998886655 578888888888888888888888888888999999999998876
Q ss_pred CCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCccccc
Q 001238 426 PIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITG 505 (1117)
Q Consensus 426 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 505 (1117)
.+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 57888888889999999999998888888888999999999999998877778888999999999999999888888888
Q ss_pred CC-CCceEEccCCccccc
Q 001238 506 CR-NLTFLDVHSNSIAGN 522 (1117)
Q Consensus 506 l~-~L~~L~Ls~N~l~~~ 522 (1117)
++ +|++|+|++|.+.+.
T Consensus 246 ~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCTTCCEEECTTCCEECS
T ss_pred hhccCCEEEccCCCeecc
Confidence 84 899999999998764
No 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=290.06 Aligned_cols=284 Identities=19% Similarity=0.190 Sum_probs=195.6
Q ss_pred CCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCccccccee
Q 001238 337 NLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAV 416 (1117)
Q Consensus 337 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 416 (1117)
.++.....++++|.++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|++++..+..|.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455566888888888 5666554 478899999999887766688888888888888888888777888888888888
Q ss_pred ecccccccCCCcccccCCCCCCeeeccCccCCCCCC-CCcccccccceeccCCC-cccccCCCCcCCCCCCCEEEccCCc
Q 001238 417 DLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIP-PEMGNCSSLIRFRANSN-KLTGFIPPEIGNLKNLNFLDLGSNR 494 (1117)
Q Consensus 417 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 494 (1117)
+|++|++++..+..+..+++|++|++++|++++..+ ..|.++++|++|++++| .+++..+..|.++++|++|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888886444447788888888888888886555 47788888888888887 4666667778888888888888888
Q ss_pred CCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcc
Q 001238 495 LTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQ 574 (1117)
Q Consensus 495 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 574 (1117)
+++..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.++++....+..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------- 244 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------- 244 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------------
Confidence 88777888888888888888888887544444555777777777777777654433221
Q ss_pred cccccceeEEecccccccc----ccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcc
Q 001238 575 LGSCVKLQLLDLSSNQLSG----NIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 575 ~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
......++.++|++|.+++ .+|..+..++++ +.|+|++|+|+...+..|..+++|+.|+|++|++.|+++
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL-LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCC-CEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1112334444554444442 234444444444 444555555542222224556666666666666666554
No 304
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.9e-28 Score=272.06 Aligned_cols=253 Identities=23% Similarity=0.277 Sum_probs=218.4
Q ss_pred ceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCC
Q 001238 414 EAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSN 493 (1117)
Q Consensus 414 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 493 (1117)
+.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 57888888887 466554 468888888888888887788888889999999999888888888888999999999999
Q ss_pred c-CCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCC
Q 001238 494 R-LTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIP 572 (1117)
Q Consensus 494 ~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 572 (1117)
+ ++...|..|..+++|++|++++|.+++..+..|..+++|++|++++|+++++.+..|..+++|+.|+|++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 777778888889999999999999988888888889999999999999998888888899999999999999987777
Q ss_pred cccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcchhhhccc
Q 001238 573 SQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHFLAELQN 652 (1117)
Q Consensus 573 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~l~~l~~ 652 (1117)
..|..+++|+.|+|++|++++..|..+..++++ +.|+|++|++++..+..+..+++|+.|+|++|++.++++..+-...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccc-cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence 778889999999999999998888899888888 7899999999988888899999999999999999998877555556
Q ss_pred ceEEEeecccccCCCCCC
Q 001238 653 LVVLNVSHNNFSGRVPDT 670 (1117)
Q Consensus 653 L~~L~ls~N~l~~~~p~~ 670 (1117)
++.++.+.|.+.+..|+.
T Consensus 250 l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHCCSEECCCBEEESGG
T ss_pred HHhcccccCccccCCchH
Confidence 777888999999888864
No 305
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.9e-32 Score=333.39 Aligned_cols=442 Identities=16% Similarity=0.147 Sum_probs=294.9
Q ss_pred CCCCchhhhcccccCcEeeccCCCc---CCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCC
Q 001238 110 LTGSIPKEIASLNQLNYLDLSENSL---TGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAI 186 (1117)
Q Consensus 110 l~~~~p~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~ 186 (1117)
+....+..+.++++|++|+|+++.. .+.+|..++... ...++.....+++|++|+|++|.+++..
T Consensus 61 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~ 128 (592)
T 3ogk_B 61 YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV------------TPWVTEISNNLRQLKSVHFRRMIVSDLD 128 (592)
T ss_dssp GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC------------HHHHHHHHHHCTTCCEEEEESCBCCHHH
T ss_pred cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccc------------hHHHHHHHhhCCCCCeEEeeccEecHHH
Confidence 3334555567888888888877532 133443322100 0001111224445555555555544444
Q ss_pred cccccCc--ccchhhhccCCCCCC-CCCCcccccccccccccccccccccc----CCcccccccccceeeccccccc---
Q 001238 187 PATIGKL--KNLEAIRAGGNKNLG-GSLPHEIGNCTNLVMIGLAETSISGF----LPPTLGLLKRLQTIAIYTALLS--- 256 (1117)
Q Consensus 187 p~~~~~l--~~L~~L~l~~n~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~l~~~~l~--- 256 (1117)
+..++.+ ++|++|++++|.... ..++..+.++++|++|++++|.+.+. ++..+..+++|+.|++++|.+.
T Consensus 129 ~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~ 208 (592)
T 3ogk_B 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS 208 (592)
T ss_dssp HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC
T ss_pred HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC
Confidence 4444432 225555555443111 01122223567777777777776655 3334567788888888888876
Q ss_pred -ccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCc---ccCCcCCCCCCCCCEEEcCCCcCCCCCc
Q 001238 257 -GQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLV---GIIPPELGNCSQLSIIDISMNSLTGSIP 332 (1117)
Q Consensus 257 -~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~LdLs~N~l~~~~p 332 (1117)
+.++..+..+++|++|+|++|.+.+ +|..+.++++|++|+++.+... +..+..+..+++|+.|+++++... .+|
T Consensus 209 ~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~ 286 (592)
T 3ogk_B 209 PKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMP 286 (592)
T ss_dssp HHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGG
T ss_pred HHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHH
Confidence 3455556788999999999999985 7788999999999999864433 334457788999999999987544 678
Q ss_pred cccCCCCCcceEecccccccCccc-ccccCCCCCcEEEecCccccCCCCcccccccchHHHHhc-----------ccccc
Q 001238 333 QTLGNLTSLQELQLSVNQISGEIP-AQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVW-----------HNRLE 400 (1117)
Q Consensus 333 ~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-----------~N~l~ 400 (1117)
..+..+++|++|+|++|.+++... ..+.++++|++|+++++...+.++..+..+++|++|+++ .|.++
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 888889999999999999875443 446889999999999443333334444667889999999 36666
Q ss_pred ccCC-CCCCcccccceeecccccccCCCcccccC-CCCCCeeecc----CccCCCC-----CCCCcccccccceeccCCC
Q 001238 401 GEIP-PSISNCQNLEAVDLSQNGLTGPIPRGIFQ-LKKLNKLLLL----SNNLSGV-----IPPEMGNCSSLIRFRANSN 469 (1117)
Q Consensus 401 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~~~~l~~L~~L~l~~N 469 (1117)
+... ..+..+++|++|+++.|.+++..+..+.. +++|+.|+++ .|++++. ++..+.++++|++|+++.|
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 4322 22345789999999999998766666665 8899999996 6777764 2223667889999999743
Q ss_pred --cccccCCCCcC-CCCCCCEEEccCCcCCC-CCCcccccCCCCceEEccCCccccc-cchhhhcccccccccccCCcCC
Q 001238 470 --KLTGFIPPEIG-NLKNLNFLDLGSNRLTG-SIPDEITGCRNLTFLDVHSNSIAGN-LPAGLHQLVRLQFADLSDNSVG 544 (1117)
Q Consensus 470 --~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~i~ 544 (1117)
.+++..+..+. .+++|++|+|++|++++ .++..+.++++|++|+|++|.|++. ++..+..+++|+.|++++|+++
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 36655444444 37889999999999875 3445567888999999999998754 3444567888999999999887
Q ss_pred CCCCCCcC-CCccccEEecccc
Q 001238 545 GMLSPDLG-SLSSLTKLVLNKN 565 (1117)
Q Consensus 545 ~~~~~~~~-~l~~L~~L~L~~N 565 (1117)
+.....+. .++.+....+..+
T Consensus 527 ~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 527 MTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHHhCCCcEEEEecCc
Confidence 76544443 4565655555543
No 306
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.8e-29 Score=284.30 Aligned_cols=277 Identities=19% Similarity=0.214 Sum_probs=144.1
Q ss_pred CCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEe
Q 001238 266 CTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQ 345 (1117)
Q Consensus 266 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 345 (1117)
|+.....++++|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 334444556666665 4554443 3566666666666655444566666666666666666655555566666666666
Q ss_pred cccccccCcccccccCCCCCcEEEecCccccCCCC-cccccccchHHHHhccc-cccccCCCCCCcccccceeecccccc
Q 001238 346 LSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIP-SEFGNLSNLTLLFVWHN-RLEGEIPPSISNCQNLEAVDLSQNGL 423 (1117)
Q Consensus 346 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l 423 (1117)
|++|++++..+..|.++++|++|++++|++++..+ ..|.++++|++|++++| .+.+..+..|..+++|++|++++|++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666654444445556666666666665553222 24444444444444444 23333334444444444444444444
Q ss_pred cCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCccc
Q 001238 424 TGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEI 503 (1117)
Q Consensus 424 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 503 (1117)
++..|..+..+++|++|++++|++.. ..+..+..+++|+.|++++|++++..+..+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~------------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHIL------------------------LLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTT------------------------HHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred CccCHHHHhccccCCeecCCCCcccc------------------------chhhhhhhcccccEEECCCCcccccccccc
Confidence 43333333333333333333333322 111112223344444444444433322222
Q ss_pred c---cCCCCceEEccCCcccc----ccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCC
Q 001238 504 T---GCRNLTFLDVHSNSIAG----NLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAG 569 (1117)
Q Consensus 504 ~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 569 (1117)
. ....++.++|++|.+.+ .+|..+..+++|+.|++++|+|+.++...|..+++|+.|+|++|++.+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 1 23445555555555554 355566677777777777777777666667777777777887777764
No 307
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=279.70 Aligned_cols=248 Identities=22% Similarity=0.236 Sum_probs=200.4
Q ss_pred CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecc
Q 001238 268 ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLS 347 (1117)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 347 (1117)
....++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567888888888 6777665 688899999999988888889999999999999999987777888889999999999
Q ss_pred cccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccc-cccccCCCCCCcccccceeecccccccCC
Q 001238 348 VNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHN-RLEGEIPPSISNCQNLEAVDLSQNGLTGP 426 (1117)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 426 (1117)
+|+|++..+..|..+++|++|+|++|+++...+..|.++++|+.|++++| .+....+..|.++++|++|+|++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99998777778888899999999999988777778888888888888884 455444456888888888888888887 3
Q ss_pred CcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccC
Q 001238 427 IPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGC 506 (1117)
Q Consensus 427 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 506 (1117)
+| .+..+++|++|+|++|+|++..|..|.++++|++|++++|++++..+..|.++++|++|+|++|+|++..+..|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 36777788888888888887777778888888888888888877777777778888888888888877666777777
Q ss_pred CCCceEEccCCccc
Q 001238 507 RNLTFLDVHSNSIA 520 (1117)
Q Consensus 507 ~~L~~L~Ls~N~l~ 520 (1117)
++|+.|+|++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 77788888777765
No 308
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=283.35 Aligned_cols=253 Identities=21% Similarity=0.268 Sum_probs=151.0
Q ss_pred CCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeecc
Q 001238 364 RLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLL 443 (1117)
Q Consensus 364 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 443 (1117)
....++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456666666666 4454433 455556666666665555556666666666666666655444555555555555555
Q ss_pred CccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccC-CcCCCCCCcccccCCCCceEEccCCccccc
Q 001238 444 SNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGS-NRLTGSIPDEITGCRNLTFLDVHSNSIAGN 522 (1117)
Q Consensus 444 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 522 (1117)
+|+|+...+..|..+++|++|++++|++++..+..|.++++|++|+|++ |.+....+..|.++++|++|+|++|+|+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--
Confidence 5555554444555555555555555555544444555555555555555 2333233334444555555555555444
Q ss_pred cchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCc
Q 001238 523 LPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKI 602 (1117)
Q Consensus 523 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 602 (1117)
.++ .+..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+
T Consensus 199 ----------------------~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 199 ----------------------EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp ----------------------SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred ----------------------ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 332 24555566666666666665556666666666666666666666666666666
Q ss_pred hhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch
Q 001238 603 PALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 603 ~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
++| +.|+|++|+|++..+..|..+++|+.|+|++|++.|++..
T Consensus 255 ~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 255 QSL-VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTC-CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCC-CEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 666 5666666666666667788889999999999999997754
No 309
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-27 Score=283.50 Aligned_cols=232 Identities=21% Similarity=0.198 Sum_probs=145.9
Q ss_pred ccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEcc
Q 001238 412 NLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLG 491 (1117)
Q Consensus 412 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 491 (1117)
+++.|+|++|.|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 44445555555544444444455555555555555555445555555555555555555554444445555555555555
Q ss_pred CCcCCCCCCcccccCCCCceEEccC-CccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCC
Q 001238 492 SNRLTGSIPDEITGCRNLTFLDVHS-NSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGS 570 (1117)
Q Consensus 492 ~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 570 (1117)
+|+|+...+..|..+++|++|++++ |.+....+..|..+++|+.|++++|++++++ .+..+++|+.|+|++|+|++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCccc
Confidence 5555544444555555555555555 3344333344555666666666666665552 356667777777777777777
Q ss_pred CCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch
Q 001238 571 IPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 571 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
.|..|..+++|+.|+|++|++++..|..|..+++| +.|+|++|+|++..+..|..+++|+.|+|++|++.|++..
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL-VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCC-CEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 77777777777777777777777777777777777 6777777777777777788888999999999999887754
No 310
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.7e-27 Score=279.79 Aligned_cols=248 Identities=21% Similarity=0.240 Sum_probs=180.3
Q ss_pred CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecc
Q 001238 268 ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLS 347 (1117)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 347 (1117)
....++.+++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3466777777777 5666554 577888888888887777778888888888888888887777778888888888888
Q ss_pred cccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhcc-ccccccCCCCCCcccccceeecccccccCC
Q 001238 348 VNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWH-NRLEGEIPPSISNCQNLEAVDLSQNGLTGP 426 (1117)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 426 (1117)
+|+|++..+..|.++++|++|+|++|+++...+..|.++++|+.|++++ |.+....+..|..+++|++|+|++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 8888766666777788888888888887766666777777777777777 34444444467777778888888887774
Q ss_pred CcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccC
Q 001238 427 IPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGC 506 (1117)
Q Consensus 427 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 506 (1117)
+| .+..+++|++|+|++|+|++..|..|.++++|++|++++|++++..+..|.++++|+.|+|++|+|++..+..|..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 34 35666777777777777777666777777777777777777776666677777777777777777776666666667
Q ss_pred CCCceEEccCCccc
Q 001238 507 RNLTFLDVHSNSIA 520 (1117)
Q Consensus 507 ~~L~~L~Ls~N~l~ 520 (1117)
++|+.|+|++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 77777777777665
No 311
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2e-28 Score=275.54 Aligned_cols=248 Identities=19% Similarity=0.234 Sum_probs=129.4
Q ss_pred hcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCc-CCCCchhcc-------CCcCCcEEeccCCCCCCCCccc
Q 001238 118 IASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQL-EGAIPIQIG-------NLSSLTQLFLYDNQLTDAIPAT 189 (1117)
Q Consensus 118 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~~~-------~L~~L~~L~L~~N~l~~~~p~~ 189 (1117)
++..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44555666666666666 455555544 66666666666 334555554 5666666666666666655555
Q ss_pred c--cCcccchhhhccCCCCCCCCCCcccccc-----ccccccccccccccccCCcccccccccceeeccccccccc--CC
Q 001238 190 I--GKLKNLEAIRAGGNKNLGGSLPHEIGNC-----TNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQ--IP 260 (1117)
Q Consensus 190 ~--~~l~~L~~L~l~~n~~~~~~lp~~l~~l-----~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~--~p 260 (1117)
+ +.+++|++|++++|+. .+. |..++.+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+. +|
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l-~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSW-ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSSCCSCCCSEEEEESCBC-SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHhcCCCccEEEccCCCC-cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 4 5555555555555542 122 4444443 4555555555555555445555555555555555554432 12
Q ss_pred cCC--CCCCCCcEEecCCCccCC--cCC-ccCCCCCCCcEEEccCCcCcccCC-cCCCCCCCCCEEEcCCCcCCCCCccc
Q 001238 261 PEL--GDCTELQYIYLYENALTG--SIP-SKLGNLKNLVNLFLWQNNLVGIIP-PELGNCSQLSIIDISMNSLTGSIPQT 334 (1117)
Q Consensus 261 ~~l--~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~ 334 (1117)
..+ ..+++|++|+|++|++++ .++ ..+.++++|++|+|++|++++..| ..+..+++|++|+|++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 222 455555555555555552 111 222345555555555555555443 33444555555555555555 44444
Q ss_pred cCCCCCcceEecccccccCcccccccCCCCCcEEEecCcccc
Q 001238 335 LGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQIT 376 (1117)
Q Consensus 335 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 376 (1117)
+. ++|++|+|++|+|++. |. +..+++|++|++++|+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 43 4555555555555533 33 555555555555555554
No 312
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.1e-29 Score=278.69 Aligned_cols=250 Identities=21% Similarity=0.244 Sum_probs=163.2
Q ss_pred ccccccchHHHHhccccccccCCCCCCcccccceeeccccccc-CCCccccc-------CCCCCCeeeccCccCCCCCCC
Q 001238 382 EFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLT-GPIPRGIF-------QLKKLNKLLLLSNNLSGVIPP 453 (1117)
Q Consensus 382 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~~~ 453 (1117)
.++..++|+.|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. ++++|++|+|++|++++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 356677788888888888 566555443 888888888883 34565554 678888888888888877777
Q ss_pred Cc--ccccccceeccCCCcccccCCCCcCCC-----CCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccc--cc
Q 001238 454 EM--GNCSSLIRFRANSNKLTGFIPPEIGNL-----KNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGN--LP 524 (1117)
Q Consensus 454 ~~--~~l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~~ 524 (1117)
.+ ..+++|++|++++|++++. |..++.+ ++|++|+|++|++++..|..|..+++|++|+|++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 7788888888888888866 6777766 7888888888888877777888888888888888887654 22
Q ss_pred hhh--hcccccccccccCCcCCCCC---CCCcCCCccccEEeccccccCCCCC-cccccccceeEEeccccccccccccc
Q 001238 525 AGL--HQLVRLQFADLSDNSVGGML---SPDLGSLSSLTKLVLNKNRFAGSIP-SQLGSCVKLQLLDLSSNQLSGNIPAS 598 (1117)
Q Consensus 525 ~~~--~~l~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 598 (1117)
..+ ..+++|+.|++++|+|+++. ...+..+++|+.|+|++|+|++..| ..+..+++|+.|+|++|+|+ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 333 55666666666666665321 2233345556666666666655443 33444556666666666655 44443
Q ss_pred cCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcchhhhcccceEEEeecccccC
Q 001238 599 LGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHFLAELQNLVVLNVSHNNFSG 665 (1117)
Q Consensus 599 l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~~ 665 (1117)
+. ++|+.|||++|++++. |.+..+++|++|+|++|++++
T Consensus 272 ~~---------------------------~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP---------------------------AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC---------------------------SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTC
T ss_pred cc---------------------------CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCC
Confidence 33 4555555555555544 225555555566666665553
No 313
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.4e-27 Score=265.01 Aligned_cols=225 Identities=22% Similarity=0.277 Sum_probs=133.5
Q ss_pred cEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccc
Q 001238 270 QYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVN 349 (1117)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 349 (1117)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 46677777776 455433 356777777777777666666777777777777777777666666777777777777777
Q ss_pred c-ccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCc
Q 001238 350 Q-ISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIP 428 (1117)
Q Consensus 350 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 428 (1117)
. +....|..|..+++|++|++++|++++..|..|.++++|++|++++|++++..+..|..+++|++|+|++|+++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc----
Confidence 5 66555666666667777777666666555555555555555555555554443444444555555555555554
Q ss_pred ccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCC
Q 001238 429 RGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRN 508 (1117)
Q Consensus 429 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 508 (1117)
+..+..|..+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++
T Consensus 167 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 167 --------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp --------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred --------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 333334444455555555555555444555555555555555555555544444555555
Q ss_pred CceEEccCCcccc
Q 001238 509 LTFLDVHSNSIAG 521 (1117)
Q Consensus 509 L~~L~Ls~N~l~~ 521 (1117)
|++|++++|.+..
T Consensus 227 L~~L~l~~N~~~c 239 (285)
T 1ozn_A 227 LQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEeccCCCccC
Confidence 5555555555553
No 314
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.9e-27 Score=269.10 Aligned_cols=234 Identities=19% Similarity=0.257 Sum_probs=124.7
Q ss_pred CCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEec
Q 001238 267 TELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQL 346 (1117)
Q Consensus 267 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~L 346 (1117)
+++++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666666666666 55555666666666666666665 55555556666666666666655 45555555555555555
Q ss_pred ccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCC
Q 001238 347 SVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGP 426 (1117)
Q Consensus 347 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 426 (1117)
++|++.+.+|..+.. . ..+..|..+++|++|+|++|+++ .
T Consensus 158 ~~n~~~~~~p~~~~~------------------------~---------------~~~~~~~~l~~L~~L~L~~n~l~-~ 197 (328)
T 4fcg_A 158 RACPELTELPEPLAS------------------------T---------------DASGEHQGLVNLQSLRLEWTGIR-S 197 (328)
T ss_dssp EEETTCCCCCSCSEE------------------------E---------------C-CCCEEESTTCCEEEEEEECCC-C
T ss_pred CCCCCccccChhHhh------------------------c---------------cchhhhccCCCCCEEECcCCCcC-c
Confidence 555555555443322 0 11122334444444555555444 3
Q ss_pred CcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccC
Q 001238 427 IPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGC 506 (1117)
Q Consensus 427 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 506 (1117)
+|..+..+++|++|+|++|++++ +|..++.+++|++|++++|++.+.+|..|+.+++|++|+|++|++.+.+|..+..+
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 276 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence 44444445555555555555543 23344555555555555555555555555555555555555555555555555555
Q ss_pred CCCceEEccCCccccccchhhhcccccccccccCCcCC
Q 001238 507 RNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVG 544 (1117)
Q Consensus 507 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 544 (1117)
++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 55555555555555555555555555555555555443
No 315
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=3.9e-29 Score=302.28 Aligned_cols=185 Identities=19% Similarity=0.149 Sum_probs=131.0
Q ss_pred eeeecCCeEEEEEE-cCCCcEEEEEEeecCC----------ccchHHHHHHHHHHhcc-CCCCcceEEeeeecCCceEEE
Q 001238 783 IIGQGRSGIVYKVT-LPSGLTVAVKRFRASD----------KISTGAFSSEIATLSRI-RHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 783 ~lg~G~fg~Vy~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~H~niv~l~~~~~~~~~~~lv 850 (1117)
..+.|++|.+..++ ...|+.||+|++.... ....++|.+|+++|+++ .|+||+++++++.+++..|+|
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 35667777666643 3358899999997542 12235699999999999 799999999999999999999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||++|++|.+++.+. ++++.. +|+.||++||+|+|++ |||||||||+|||++++|++||+|||+|+....
T Consensus 321 MEyv~G~~L~d~i~~~---~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~ 391 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAG---EEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ 391 (569)
T ss_dssp EECCCSEEHHHHHHTT---CCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred EecCCCCcHHHHHHhC---CCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence 9999999999999875 336654 5889999999999999 999999999999999999999999999987654
Q ss_pred CCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCC
Q 001238 931 DSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKP 981 (1117)
Q Consensus 931 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P 981 (1117)
.. ......+||++|||||++.+ .+..++|+||+|++++++.++..|
T Consensus 392 ~~----~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 392 DC----SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp ------CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred CC----ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 32 23345689999999999874 567889999999998887666544
No 316
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=7.6e-28 Score=271.41 Aligned_cols=265 Identities=20% Similarity=0.210 Sum_probs=173.9
Q ss_pred EeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCC
Q 001238 103 LVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQL 182 (1117)
Q Consensus 103 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l 182 (1117)
++++++++...++..+..+++|++|||++|.+++..|..|..+++|++|+|++|++++..| ++.+++|++|+|++|++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444432233333444455555555555554444555555555555555555553333 55555555555555555
Q ss_pred CCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCCcC
Q 001238 183 TDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPE 262 (1117)
Q Consensus 183 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~ 262 (1117)
++ +| ..++|++|+++ +|.+.+..+. .+++|++|++++|.+.+..+..
T Consensus 93 ~~-l~----~~~~L~~L~l~-------------------------~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 93 QE-LL----VGPSIETLHAA-------------------------NNNISRVSCS---RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp EE-EE----ECTTCCEEECC-------------------------SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC
T ss_pred cc-cc----CCCCcCEEECC-------------------------CCccCCcCcc---ccCCCCEEECCCCCCCCccchh
Confidence 42 11 11333333333 3333322221 2345666666666666666667
Q ss_pred CCCCCCCcEEecCCCccCCcCCccCC-CCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCc
Q 001238 263 LGDCTELQYIYLYENALTGSIPSKLG-NLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSL 341 (1117)
Q Consensus 263 l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 341 (1117)
+..+++|++|+|++|.+++..|..+. .+++|++|+|++|.+++. +....+++|++|+|++|++++ +|..+..+++|
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 216 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc-chhhhcccCcc
Confidence 77788888888888888877676664 788899999999998865 233458899999999999985 44558888999
Q ss_pred ceEecccccccCcccccccCCCCCcEEEecCcccc-CCCCcccccccchHHHHhcc-ccccccCCCC
Q 001238 342 QELQLSVNQISGEIPAQIGNCQRLAQIELDNNQIT-GAIPSEFGNLSNLTLLFVWH-NRLEGEIPPS 406 (1117)
Q Consensus 342 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~ 406 (1117)
++|+|++|+|+ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.|++.+ +.+++..+..
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 99999999998 57778888999999999999998 77788888999999999984 4566655543
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4e-28 Score=273.67 Aligned_cols=261 Identities=20% Similarity=0.205 Sum_probs=160.9
Q ss_pred EecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccc
Q 001238 272 IYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQI 351 (1117)
Q Consensus 272 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 351 (1117)
++++.+.+...++..+..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..+ +..+++|++|+|++|++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444433233333334445555555555544444444555555555555555543322 44555555555555555
Q ss_pred cCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccc
Q 001238 352 SGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGI 431 (1117)
Q Consensus 352 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 431 (1117)
++.. ..++|++|++++|++++..+.. +++|+.|++++|++++..+..+..+++|++|+|++|.+++..+..+
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 4221 1245555555555555433322 3445555555665555555566666777777777777766555555
Q ss_pred c-CCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCc
Q 001238 432 F-QLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLT 510 (1117)
Q Consensus 432 ~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 510 (1117)
. .+++|++|+|++|+|++.. ....+++|++|++++|++++.. ..+..+++|++|+|++|+|+ .+|..+..+++|+
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred hhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 3 5677777777777777552 2234778888888888888554 45888899999999999998 4677888889999
Q ss_pred eEEccCCccc-cccchhhhcccccccccccCC-cCCCC
Q 001238 511 FLDVHSNSIA-GNLPAGLHQLVRLQFADLSDN-SVGGM 546 (1117)
Q Consensus 511 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N-~i~~~ 546 (1117)
.|++++|.+. +.++..+..+++|+.+++++| .+.+.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 9999999998 778888888888888888844 34443
No 318
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.8e-26 Score=275.53 Aligned_cols=266 Identities=27% Similarity=0.307 Sum_probs=164.7
Q ss_pred CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecc
Q 001238 268 ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLS 347 (1117)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls 347 (1117)
+++.|++++|.++ .+|..+. ++|++|+|++|+++ .+|. .+++|++|+|++|++++ +|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5888999999998 6787665 78888999988888 4554 56888888888888884 554 56788888888
Q ss_pred cccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCC
Q 001238 348 VNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPI 427 (1117)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 427 (1117)
+|+|++ +|. .+++|+.|++++|++++ +|.. +++|++|++++| ++++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N------------------------~l~~-l 156 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN------------------------QLAS-L 156 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS------------------------CCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC------------------------cCCC-c
Confidence 888874 333 45677777777777774 3332 244444444444 4442 2
Q ss_pred cccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCC
Q 001238 428 PRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCR 507 (1117)
Q Consensus 428 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 507 (1117)
|. .+.+|+.|++++|+|+++ | ..+++|+.|++++|+|++ +|.. +++|+.|++++|.++. +|.. ++
T Consensus 157 ~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~---~~ 221 (622)
T 3g06_A 157 PA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PS 221 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC---CT
T ss_pred CC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC---CC
Confidence 22 123444455555554432 2 223445555555555553 2221 2456666666666652 3322 35
Q ss_pred CCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecc
Q 001238 508 NLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLS 587 (1117)
Q Consensus 508 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 587 (1117)
+|++|+|++|+|++ +| ..+++|+.|++++|+|+.++. .+++|+.|+|++|+|+ .+|..|..+++|+.|+|+
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 56666666666664 33 233556666666666665544 3466777777777777 556667777777777777
Q ss_pred ccccccccccccCC
Q 001238 588 SNQLSGNIPASLGK 601 (1117)
Q Consensus 588 ~N~l~~~~p~~l~~ 601 (1117)
+|.+++.+|..+..
T Consensus 293 ~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 293 GNPLSERTLQALRE 306 (622)
T ss_dssp SCCCCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHh
Confidence 77777666655433
No 319
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.1e-25 Score=268.71 Aligned_cols=268 Identities=28% Similarity=0.341 Sum_probs=162.7
Q ss_pred cccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEcc
Q 001238 220 NLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLW 299 (1117)
Q Consensus 220 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 299 (1117)
+++.|++++|.++ .+|..+. ++|+.|++++|.+. .+|. .+++|++|+|++|+|+ .+|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 3555566666555 3444443 56666666666655 2443 4566777777777766 3554 55667777777
Q ss_pred CCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCC
Q 001238 300 QNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAI 379 (1117)
Q Consensus 300 ~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 379 (1117)
+|++++ +|. .+++|+.|++++|++++ +|.. +++|++|+|++|++++ +|. .+.+|+.|++++|+|++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 777664 333 45667777777777663 4432 3667777777777663 332 23566667777777664 3
Q ss_pred CcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCccccc
Q 001238 380 PSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCS 459 (1117)
Q Consensus 380 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 459 (1117)
| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|.. +++|++|+|++|+|++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCC
Confidence 3 334566666677776663 3332 356677777777776 34432 3567777777777765 33 3446
Q ss_pred ccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhccc
Q 001238 460 SLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLV 531 (1117)
Q Consensus 460 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 531 (1117)
+|+.|++++|+|+. +|. .+++|+.|+|++|+|+ .+|..|..+++|+.|+|++|.+++..|..+..++
T Consensus 242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 67777777777763 333 4566777777777777 5566677777777777777777766666655544
No 320
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-25 Score=247.00 Aligned_cols=73 Identities=29% Similarity=0.407 Sum_probs=41.1
Q ss_pred CCCcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcC
Q 001238 60 ETPCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLT 135 (1117)
Q Consensus 60 ~~~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 135 (1117)
.++|.|.|+.|.+.+.+..++++++++.. +|..+. .++++|+|++|++++..+..|+++++|++|+|++|.++
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC
Confidence 36799999999876555566666655543 444333 34455555555554333334445555555555555444
No 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.7e-30 Score=316.56 Aligned_cols=459 Identities=15% Similarity=0.163 Sum_probs=252.1
Q ss_pred CcceeeEEecCCCcEEEEecccccccCcCC-ccccccccCCeEeccCCCCCC---Cc------------hhhhcccccCc
Q 001238 62 PCKWFGVSCNLNNQVVGLDLRYVDLLGHVP-TNFTSLLSLNRLVLSGTNLTG---SI------------PKEIASLNQLN 125 (1117)
Q Consensus 62 ~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~---~~------------p~~~~~l~~L~ 125 (1117)
|++|+++... ....+++..+. +..| ..+..+++|+.|+|+++.... .. +.-+..+++|+
T Consensus 34 ck~W~~~~~~---~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 34 CKSWYEIERW---CRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp CHHHHHHHHH---HCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHhhhh---hceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 4578887221 12234443321 2222 235677889999999875321 11 22235788999
Q ss_pred EeeccCCCcCCCCchhhh-hhhhhhhhhccCC-CcCCC-CchhccCCcCCcEEeccCCCCCCCCccccc----Ccccchh
Q 001238 126 YLDLSENSLTGEIPRELC-SLLRLEQLRLNSN-QLEGA-IPIQIGNLSSLTQLFLYDNQLTDAIPATIG----KLKNLEA 198 (1117)
Q Consensus 126 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~----~l~~L~~ 198 (1117)
+|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+.
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCE
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcE
Confidence 999999998877777776 6889999999998 55432 556666899999999999998775555444 3445666
Q ss_pred hhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCC--
Q 001238 199 IRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYE-- 276 (1117)
Q Consensus 199 L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~-- 276 (1117)
|++++|. +.+... .++..+..+++|+.|++.+|...+.+|..+..+++|++|+++.
T Consensus 189 L~l~~~~---~~~~~~-------------------~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 189 LNISCLA---SEVSFS-------------------ALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp EECTTCC---SCCCHH-------------------HHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred EEecccC---CcCCHH-------------------HHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 6665553 111100 0111122345555555555522222455555566666666433
Q ss_pred -----CccCCcCCccCCCCCCCcEE-EccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCC-ccccCCCCCcceEecccc
Q 001238 277 -----NALTGSIPSKLGNLKNLVNL-FLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSI-PQTLGNLTSLQELQLSVN 349 (1117)
Q Consensus 277 -----n~l~~~~p~~l~~l~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~Ls~N 349 (1117)
|.+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|+|++|.+++.. +..+..+++|++|++++|
T Consensus 247 ~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 247 AEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 33443 34456777777777 3433322 234444446778888888888766432 223557788888888877
Q ss_pred cccCc-ccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCC-CcccccceeecccccccCCC
Q 001238 350 QISGE-IPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSI-SNCQNLEAVDLSQNGLTGPI 427 (1117)
Q Consensus 350 ~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 427 (1117)
+... ++.....+++|++|++.++.-.| ....+.+++.....+ ..+++|+.|+++.|.+++..
T Consensus 325 -~~~~~l~~l~~~~~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 325 -IEDAGLEVLASTCKDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp -GHHHHHHHHHHHCTTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred -cCHHHHHHHHHhCCCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 4322 22223357778888774432100 000111111100001 12345555555555555433
Q ss_pred ccccc-CCCCCCeeecc--C----ccCCCCCC-----CCcccccccceeccCCCcccccCCCCcCC-CCCCCEEEccCCc
Q 001238 428 PRGIF-QLKKLNKLLLL--S----NNLSGVIP-----PEMGNCSSLIRFRANSNKLTGFIPPEIGN-LKNLNFLDLGSNR 494 (1117)
Q Consensus 428 p~~~~-~l~~L~~L~L~--~----N~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~ 494 (1117)
+..+. .+++|+.|+++ + |+++.... ..+..+++|++|++++ .+++..+..+.. +++|+.|+|++|.
T Consensus 389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 33333 35556666665 2 33432111 1144556677777755 555444444444 6677777777777
Q ss_pred CCCCCCccc-ccCCCCceEEccCCccccccch-hhhcccccccccccCCcCCCCCCCCc-CCCccccEEeccccc
Q 001238 495 LTGSIPDEI-TGCRNLTFLDVHSNSIAGNLPA-GLHQLVRLQFADLSDNSVGGMLSPDL-GSLSSLTKLVLNKNR 566 (1117)
Q Consensus 495 l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~L~~N~ 566 (1117)
+++..+..+ .++++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..+++|+...+..+.
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 765444444 5577777777777777544333 33446777777777777643222222 344566555555553
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-26 Score=274.73 Aligned_cols=237 Identities=22% Similarity=0.182 Sum_probs=150.7
Q ss_pred CCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceE
Q 001238 265 DCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQEL 344 (1117)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L 344 (1117)
.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 33456666666666665555556666666666666666654433 5556666666666665553221 1455555
Q ss_pred ecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeeccccccc
Q 001238 345 QLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLT 424 (1117)
Q Consensus 345 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 424 (1117)
++++|.|++..+. .+++|+.|++++|.++ +..|..+..+++|+.|+|++|.++
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~------------------------~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKIT------------------------MLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCC------------------------SGGGBCGGGGSSEEEEECTTSCCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCC------------------------CCCchhhcCCCCCCEEECCCCCCC
Confidence 5555555543332 2244455555555444 444445555566666666666666
Q ss_pred CCCccccc-CCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCccc
Q 001238 425 GPIPRGIF-QLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEI 503 (1117)
Q Consensus 425 ~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 503 (1117)
+..|..+. .+++|+.|+|++|.|++..+ +..+++|+.|++++|+|++..| .|..+++|+.|+|++|+|++ +|..+
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred CcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhh
Confidence 55555554 56666666666666665522 2347777888888888876544 48888889999999999885 67778
Q ss_pred ccCCCCceEEccCCccc-cccchhhhccccccccccc
Q 001238 504 TGCRNLTFLDVHSNSIA-GNLPAGLHQLVRLQFADLS 539 (1117)
Q Consensus 504 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls 539 (1117)
..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88889999999999987 6677778888888877765
No 323
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-26 Score=275.17 Aligned_cols=238 Identities=19% Similarity=0.193 Sum_probs=183.4
Q ss_pred ccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCE
Q 001238 240 GLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSI 319 (1117)
Q Consensus 240 ~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 319 (1117)
..+++|+.|++++|.+.+..|..|..+++|++|+|++|.+++..| |+.+++|++|+|++|.+++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 345599999999999999888999999999999999999997665 9999999999999999996543 389999
Q ss_pred EEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccc-cccchHHHHhcccc
Q 001238 320 IDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFG-NLSNLTLLFVWHNR 398 (1117)
Q Consensus 320 LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~ 398 (1117)
|++++|.+++..+. .+++|+.|+|++|.+++..|..|+++++|+.|+|++|.+++.+|..|. .+++|+.|+|++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999999976554 458899999999999999899999999999999999999987777664 56666666666666
Q ss_pred ccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCC
Q 001238 399 LEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPE 478 (1117)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 478 (1117)
+++..+ +..+++|+.|+|++|.| ++.+| .|..+++|+.|++++|+|++ +|..
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l------------------------~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKL------------------------AFMGP-EFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCC------------------------CEECG-GGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred cccccc--cccCCCCCEEECCCCCC------------------------CCCCH-hHcCCCCccEEEecCCcCcc-cchh
Confidence 654422 22344555555555544 43322 25555566666666666663 4556
Q ss_pred cCCCCCCCEEEccCCcCC-CCCCcccccCCCCceEEcc
Q 001238 479 IGNLKNLNFLDLGSNRLT-GSIPDEITGCRNLTFLDVH 515 (1117)
Q Consensus 479 ~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls 515 (1117)
+..+++|+.|++++|.+. +.+|..+..++.|+.|+++
T Consensus 233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777788888888888887 5667777777777777775
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.9e-25 Score=244.14 Aligned_cols=207 Identities=19% Similarity=0.115 Sum_probs=82.2
Q ss_pred CCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccC
Q 001238 437 LNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHS 516 (1117)
Q Consensus 437 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 516 (1117)
|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 44444444444433333344444444444444444433333344444444444444444433333344444444444444
Q ss_pred CccccccchhhhcccccccccccCCcCCCCC-CCCcCCCccccEEeccccccCCCCCccccccccee----EEecccccc
Q 001238 517 NSIAGNLPAGLHQLVRLQFADLSDNSVGGML-SPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQ----LLDLSSNQL 591 (1117)
Q Consensus 517 N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~Ls~N~l 591 (1117)
|.+.+..+..+..+++|+.|++++|.++++. +..|..+++|+.|+|++|++++..+..|..+.+|+ .|++++|++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence 4443333323333333333333333333322 22333333333333333333333333333333333 444444444
Q ss_pred ccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcc
Q 001238 592 SGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 592 ~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
++..+. .....++ +.|+|++|++++..+..|..+++|+.|+|++|+++|+++
T Consensus 190 ~~~~~~-~~~~~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 190 NFIQPG-AFKEIRL-KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEECTT-SSCSCCE-EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccCcc-ccCCCcc-cEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 422221 1122222 334444444443333344455555555555555555544
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.9e-24 Score=236.11 Aligned_cols=208 Identities=23% Similarity=0.243 Sum_probs=153.5
Q ss_pred chHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccC
Q 001238 388 NLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRAN 467 (1117)
Q Consensus 388 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 467 (1117)
+|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444456666666666666666665445556666677777777777766666677777777777777
Q ss_pred CCcccccCCCCcCCCCCCCEEEccCCcCCCC-CCcccccCCCCceEEccCCccccccchhhhcccccc----cccccCCc
Q 001238 468 SNKLTGFIPPEIGNLKNLNFLDLGSNRLTGS-IPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQ----FADLSDNS 542 (1117)
Q Consensus 468 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~ 542 (1117)
+|++++..+..+..+++|++|++++|++++. +|..|..+++|++|+|++|++++..+..|..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7777766666788888888888888888764 578888888888888888888887777777777777 77888888
Q ss_pred CCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccc
Q 001238 543 VGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIP 596 (1117)
Q Consensus 543 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 596 (1117)
++++.+..+... +|+.|+|++|+|++..+..|..+++|+.|+|++|++++..|
T Consensus 189 l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 888777666554 78888888888887777778888888888888888885443
No 326
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=3.8e-25 Score=266.00 Aligned_cols=188 Identities=14% Similarity=0.202 Sum_probs=147.3
Q ss_pred CCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCcc--------chHHHHHHHHHHhccCCCCcceEEeeeecCCceEEE
Q 001238 779 TAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKI--------STGAFSSEIATLSRIRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 779 ~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~H~niv~l~~~~~~~~~~~lv 850 (1117)
...+.||+|+||+||+|.. .++.+|+|+....... ..+++.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4467899999999999965 5788999987543211 134588999999999999999666666677788999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccC
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVED 930 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~ 930 (1117)
|||+++++|.+++.. +..++.|+++||+|||++ +|+||||||+||+++. .+||+|||+++....
T Consensus 418 mE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 418 MSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp EECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred EECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 999999999999875 457999999999999999 9999999999999999 999999999998753
Q ss_pred CCCCc---cccCCccccccccCChhhhcc--CCCCcCCCeeehhhhHHHHHhCCCCCC
Q 001238 931 DSGGS---FSANPQFAGSYGYIAPEYANM--TKISEKSDVYSYGVVLLEIITGKKPVD 983 (1117)
Q Consensus 931 ~~~~~---~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~SlG~vl~ell~g~~P~~ 983 (1117)
..... ........||+.|||||++.. ..|+...|+|+..+-..+.+.++.+|.
T Consensus 482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 21100 001235689999999999986 678889999999999999988887773
No 327
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=5.1e-28 Score=298.37 Aligned_cols=426 Identities=13% Similarity=0.131 Sum_probs=208.0
Q ss_pred ccccccccccccccccccc---cCCc------------ccccccccceeecccccccccCCcCCC-CCCCCcEEecCCC-
Q 001238 215 IGNCTNLVMIGLAETSISG---FLPP------------TLGLLKRLQTIAIYTALLSGQIPPELG-DCTELQYIYLYEN- 277 (1117)
Q Consensus 215 l~~l~~L~~L~l~~~~~~~---~lp~------------~l~~l~~L~~L~l~~~~l~~~~p~~l~-~l~~L~~L~L~~n- 277 (1117)
+..+++|+.|+++++.... ..|. ....+++|+.|++++|.+.+..+..+. .+++|++|+|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3456677777777654221 1111 112344555555555544443333332 3455555555554
Q ss_pred ccCCc-CCccCCCCCCCcEEEccCCcCcccCCcC----CCCCCCCCEEEcCCCc--CCC-CCccccCCCCCcceEecccc
Q 001238 278 ALTGS-IPSKLGNLKNLVNLFLWQNNLVGIIPPE----LGNCSQLSIIDISMNS--LTG-SIPQTLGNLTSLQELQLSVN 349 (1117)
Q Consensus 278 ~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~LdLs~N~--l~~-~~p~~l~~l~~L~~L~Ls~N 349 (1117)
.++.. ++..+.++++|++|+|++|.+++..+.. ...+++|+.|++++|. ++. .++..+.++++|++|+|++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 33221 2222234455555555555544322221 1234455555555544 110 01111122345555555544
Q ss_pred -cccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCccccccee-ecccccccCCC
Q 001238 350 -QISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAV-DLSQNGLTGPI 427 (1117)
Q Consensus 350 -~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~ 427 (1117)
.+. .++..+..+++|++|+++.+... +..|.+.+ ++..+.++++|+.| .+.+.... .+
T Consensus 222 ~~~~-~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l 281 (594)
T 2p1m_B 222 VPLE-KLATLLQRAPQLEELGTGGYTAE-----------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YL 281 (594)
T ss_dssp SCHH-HHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GG
T ss_pred CcHH-HHHHHHhcCCcceEcccccccCc-----------------cchhhHHH-HHHHHhcCCCcccccCCcccchh-hH
Confidence 222 24444444455555543322210 22222332 22244556666666 33333222 34
Q ss_pred cccccCCCCCCeeeccCccCCCCCCC-CcccccccceeccCCCccccc-CCCCcCCCCCCCEEEcc---------CCcCC
Q 001238 428 PRGIFQLKKLNKLLLLSNNLSGVIPP-EMGNCSSLIRFRANSNKLTGF-IPPEIGNLKNLNFLDLG---------SNRLT 496 (1117)
Q Consensus 428 p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls---------~N~l~ 496 (1117)
+..+..+++|++|++++|.+++.... .+..+++|++|++++| +++. ++.....+++|++|+|+ .|.++
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 44444566777777777765532211 2345667777777766 3322 12222346777777773 34454
Q ss_pred CCCCcccc-cCCCCceEEccCCccccccchhhh-ccccccccccc--C----CcCCCCCCC-----CcCCCccccEEecc
Q 001238 497 GSIPDEIT-GCRNLTFLDVHSNSIAGNLPAGLH-QLVRLQFADLS--D----NSVGGMLSP-----DLGSLSSLTKLVLN 563 (1117)
Q Consensus 497 ~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~i~~~~~~-----~~~~l~~L~~L~L~ 563 (1117)
+.....+. ++++|++|+++.|.+++.....+. .+++|+.|+++ + |.+++.+.. .+..+++|+.|+|+
T Consensus 361 ~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec
Confidence 33222332 467777777777777765555554 46777777777 3 444432211 14455677777776
Q ss_pred ccccCCCCCccccc-ccceeEEecccccccccccccc-CCchhHHHhhcCCCCcccCCccc-cccCCCCccEEeccCccc
Q 001238 564 KNRFAGSIPSQLGS-CVKLQLLDLSSNQLSGNIPASL-GKIPALAIALNLSWNQICGELPA-ELTGLNKLGILDLSHNEL 640 (1117)
Q Consensus 564 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~l~~~L~Ls~N~l~~~~p~-~l~~l~~L~~LdLs~N~l 640 (1117)
+ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++| +.|+|++|.+++..+. .+..+++|+.|++++|++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L-~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL-RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC-CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc-CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6 455443444443 6677777777777765443333 334555 5666666666443333 233466777777777776
Q ss_pred cCCc-chh-hhcccceEEEeecccc
Q 001238 641 SGDL-HFL-AELQNLVVLNVSHNNF 663 (1117)
Q Consensus 641 ~~~~-~~l-~~l~~L~~L~ls~N~l 663 (1117)
+... ..+ ..++.|+...+..+..
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CHHHHHHHHHhCCCCEEEEecCCCc
Confidence 4321 123 4456666555555543
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.8e-24 Score=233.41 Aligned_cols=231 Identities=18% Similarity=0.206 Sum_probs=185.9
Q ss_pred cccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCccccccccee
Q 001238 385 NLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRF 464 (1117)
Q Consensus 385 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 464 (1117)
.+.++..+++..+.+.+.. .+..+++|+.|++++|.++. + ..+..+++|++|++++|++++. ..+..+++|++|
T Consensus 17 ~~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 90 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred hHHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence 3566777888888776543 35677888888888888873 3 3477788888888888888863 477888888888
Q ss_pred ccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCC
Q 001238 465 RANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVG 544 (1117)
Q Consensus 465 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 544 (1117)
++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|+++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 88888888877777888888888888888888777777888888888888888888877777888888888888888888
Q ss_pred CCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccc
Q 001238 545 GMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAEL 624 (1117)
Q Consensus 545 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l 624 (1117)
++.+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|.+.+..| .+ ..|+++.|.++|.+|..+
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l-~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GI-RYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TT-HHHHHHHHHTGGGBBCTT
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HH-HHHHHHHHhCCCcccCcc
Confidence 8888888888888888888888888878778888888888888888876544 33 567777888888888777
Q ss_pred cCCCC
Q 001238 625 TGLNK 629 (1117)
Q Consensus 625 ~~l~~ 629 (1117)
+.+..
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 66654
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.5e-23 Score=227.71 Aligned_cols=232 Identities=22% Similarity=0.263 Sum_probs=170.1
Q ss_pred hhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccc
Q 001238 144 SLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVM 223 (1117)
Q Consensus 144 ~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~ 223 (1117)
.+.++..+++..+.+.... .+..+++|+.|++++|.++. + ..++.+++|++|++++|+
T Consensus 17 ~~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~------------------ 74 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNK------------------ 74 (272)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSC------------------
T ss_pred hHHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCC------------------
Confidence 3456666777777665332 35567777777777777653 2 234444444444444443
Q ss_pred cccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcC
Q 001238 224 IGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNL 303 (1117)
Q Consensus 224 L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 303 (1117)
+.+ ++.+..+++|++|++++|.+.+..+..+..+++|++|+|++|++++..+..|+++++|++|++++|++
T Consensus 75 -------l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 75 -------LHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp -------CCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred -------CCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc
Confidence 332 12445556666666666666666666778888888888888888877777788888888888888888
Q ss_pred cccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCccc
Q 001238 304 VGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEF 383 (1117)
Q Consensus 304 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 383 (1117)
++..+..|..+++|++|++++|++++..+..++.+++|++|+|++|++++..+..+..+++|++|++++|.+.+.
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----- 220 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----- 220 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----
T ss_pred CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----
Confidence 877777788888899999999888877777788888899999999988887777788888999999998887743
Q ss_pred ccccchHHHHhccccccccCCCCCCccccc
Q 001238 384 GNLSNLTLLFVWHNRLEGEIPPSISNCQNL 413 (1117)
Q Consensus 384 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 413 (1117)
+++|+.|+++.|+++|.+|..++.+...
T Consensus 221 --~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 221 --CPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp --TTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred --CcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 4568888899999988888888766543
No 330
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.3e-23 Score=228.93 Aligned_cols=206 Identities=27% Similarity=0.287 Sum_probs=144.9
Q ss_pred ccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEcc
Q 001238 412 NLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLG 491 (1117)
Q Consensus 412 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 491 (1117)
+.+.+++++|.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|+++...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888888 4666554 567888888888877766677777777777777777776666666777777777777
Q ss_pred CCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCC
Q 001238 492 SNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSI 571 (1117)
Q Consensus 492 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 571 (1117)
+|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.|+++++..|..+++|+.|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77777666666677777777777777777666666666666666666666666666666666666666666666666555
Q ss_pred CcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcc
Q 001238 572 PSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 572 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
+..|..+++|+.|+|++|+++ +..+..|..+++|+.|+|++|++.+++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLK-------------------------RVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-------------------------CCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCC-------------------------cCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 555656666666666665555 3334456677888999999999988765
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.5e-23 Score=229.57 Aligned_cols=207 Identities=25% Similarity=0.218 Sum_probs=138.9
Q ss_pred CCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCC
Q 001238 407 ISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLN 486 (1117)
Q Consensus 407 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 486 (1117)
+.++++++++++++|.++ .+|..+. +.++.|+|++|+|++..+..|.++++|++|++++|+|++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 345566677777777776 3555443 466677777777766666666666677777777776665433 25667777
Q ss_pred EEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccc
Q 001238 487 FLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNR 566 (1117)
Q Consensus 487 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~ 566 (1117)
+|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|++++|+|+++++..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 556666677777777777777776666666666666666666666666666666666666666666666
Q ss_pred cCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcc
Q 001238 567 FAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 567 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
|++..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++.|++.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~--------------------------~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY--------------------------TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC--------------------------CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC--------------------------ccChhhcccccCCeEEeCCCCccCcCc
Confidence 66555555666666666666666665 344445556688999999999998764
No 332
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.1e-22 Score=225.64 Aligned_cols=204 Identities=25% Similarity=0.308 Sum_probs=117.2
Q ss_pred CCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCc
Q 001238 287 LGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLA 366 (1117)
Q Consensus 287 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 366 (1117)
+.++++++++++++|+++ .+|..+. ++++.|+|++|.+++..+..|..+++|++|+|++|.|++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344555555555555555 2333332 3455555555555544444555555555555555555432211 3444444
Q ss_pred EEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCcc
Q 001238 367 QIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNN 446 (1117)
Q Consensus 367 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 446 (1117)
+|++++|++ + .+|..+..+++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus 81 ~L~Ls~N~l------------------------~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 81 TLDLSHNQL------------------------Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEECCSSCC------------------------S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcC------------------------C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 444444444 3 334445555666666666666665444556666666666666666
Q ss_pred CCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCcccc
Q 001238 447 LSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAG 521 (1117)
Q Consensus 447 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 521 (1117)
|++..+..|..+++|+.|++++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|.+..
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 66666666666666677777777766555556666777777777777776 556666666677777777777653
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=9.6e-25 Score=250.91 Aligned_cols=261 Identities=16% Similarity=0.170 Sum_probs=173.1
Q ss_pred EEEcCCCcCCCCCccccCCCCCcceEecccccccCccc----ccccCCC-CCcEEEecCccccCCCCcccccccchHHHH
Q 001238 319 IIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIP----AQIGNCQ-RLAQIELDNNQITGAIPSEFGNLSNLTLLF 393 (1117)
Q Consensus 319 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 393 (1117)
.+++++|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|++++..+..|..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~------- 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI------- 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH-------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH-------
Confidence 46788899998888877777779999999999887666 6777787 88889998888887666555543
Q ss_pred hccccccccCCCCCCc-ccccceeecccccccCCCcccccC----C-CCCCeeeccCccCCCCCCCCccc-----ccccc
Q 001238 394 VWHNRLEGEIPPSISN-CQNLEAVDLSQNGLTGPIPRGIFQ----L-KKLNKLLLLSNNLSGVIPPEMGN-----CSSLI 462 (1117)
Q Consensus 394 L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~ 462 (1117)
+.. .++|++|+|++|++++..+..+.. + ++|++|+|++|+|++..+..+.. .++|+
T Consensus 75 -------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 75 -------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp -------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred -------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 001 145555555555555444443322 2 55666666666665544433322 24666
Q ss_pred eeccCCCcccccCC----CCcCCCC-CCCEEEccCCcCCCCCCcccc----cC-CCCceEEccCCccccc----cchhhh
Q 001238 463 RFRANSNKLTGFIP----PEIGNLK-NLNFLDLGSNRLTGSIPDEIT----GC-RNLTFLDVHSNSIAGN----LPAGLH 528 (1117)
Q Consensus 463 ~L~l~~N~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~~~~~~ 528 (1117)
+|++++|++++..+ ..+..++ +|++|+|++|++++..+..+. .+ ++|++|+|++|.|++. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 66666666664332 2234444 788888888888766665444 33 5788888888888763 344555
Q ss_pred cc-cccccccccCCcCCCCCC----CCcCCCccccEEeccccccCCCC-------CcccccccceeEEeccccccccccc
Q 001238 529 QL-VRLQFADLSDNSVGGMLS----PDLGSLSSLTKLVLNKNRFAGSI-------PSQLGSCVKLQLLDLSSNQLSGNIP 596 (1117)
Q Consensus 529 ~l-~~L~~L~Ls~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~~~p 596 (1117)
.+ ++|+.|+|++|.|++... ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++|.+.+..+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 53 478888888888877654 34566788888899888865443 3356778889999999999886644
Q ss_pred ccc
Q 001238 597 ASL 599 (1117)
Q Consensus 597 ~~l 599 (1117)
..+
T Consensus 302 ~~~ 304 (362)
T 3goz_A 302 IPI 304 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 334
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.9e-24 Score=248.35 Aligned_cols=259 Identities=16% Similarity=0.135 Sum_probs=166.6
Q ss_pred EEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCc----cccCCCC-CcceEecccccccCcccccccCC-----CC
Q 001238 295 NLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIP----QTLGNLT-SLQELQLSVNQISGEIPAQIGNC-----QR 364 (1117)
Q Consensus 295 ~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 364 (1117)
.+.++.|++++.+|..+...++|++|||++|.+++..+ ..+..++ +|++|+|++|.|++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999988888888889999999999997776 7788888 99999999999998878777775 99
Q ss_pred CcEEEecCccccCCCCcccccc-----cchHHHHhccccccccCCCCCC----c-ccccceeecccccccCCCc----cc
Q 001238 365 LAQIELDNNQITGAIPSEFGNL-----SNLTLLFVWHNRLEGEIPPSIS----N-CQNLEAVDLSQNGLTGPIP----RG 430 (1117)
Q Consensus 365 L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~----~-l~~L~~L~Ls~N~l~~~~p----~~ 430 (1117)
|++|+|++|++++..+..+... ++|++|++++|++++..+..+. . .++|++|+|++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999997776655443 6777777777777655443332 2 2567777777777764332 22
Q ss_pred ccCCC-CCCeeeccCccCCCCCCCCccc----c-cccceeccCCCccccc----CCCCcCC-CCCCCEEEccCCcCCCCC
Q 001238 431 IFQLK-KLNKLLLLSNNLSGVIPPEMGN----C-SSLIRFRANSNKLTGF----IPPEIGN-LKNLNFLDLGSNRLTGSI 499 (1117)
Q Consensus 431 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~----l-~~L~~L~l~~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~ 499 (1117)
+..++ +|++|+|++|+|++..+..+.. + ++|++|++++|.|++. ++..+.. .++|++|+|++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33343 6667777776666555443332 2 4566666666666542 2223333 235666666666655433
Q ss_pred Cc----ccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCC
Q 001238 500 PD----EITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGS 570 (1117)
Q Consensus 500 p~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 570 (1117)
+. .+..+++|++|+|++|.+.+..+..+..+ ...+..+++|+.|++++|.+.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l-----------------~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL-----------------GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH-----------------HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH-----------------HHHhccCCceEEEecCCCcCCCc
Confidence 32 22344555555555555443322211110 12344555666666666666543
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=228.57 Aligned_cols=228 Identities=19% Similarity=0.219 Sum_probs=156.2
Q ss_pred ccCCeEeccCCCCCCCc-hh--hhcccccCcEeeccCCCcCCCCchhh--hhhhhhhhhhccCCCcCCCCc----hhccC
Q 001238 98 LSLNRLVLSGTNLTGSI-PK--EIASLNQLNYLDLSENSLTGEIPREL--CSLLRLEQLRLNSNQLEGAIP----IQIGN 168 (1117)
Q Consensus 98 ~~L~~L~L~~n~l~~~~-p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 168 (1117)
..++.|.+.++.++... .. .+..+++|++|+|++|.+++.+|..+ ..+++|++|+|++|.+++..| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34677888877775321 11 12345679999999999988888887 888899999999999887655 45567
Q ss_pred CcCCcEEeccCCCCCCCCcccccCcccchhhhccCCCCCCC---CCCccccccccccccccccccccccCCccccccccc
Q 001238 169 LSSLTQLFLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGG---SLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRL 245 (1117)
Q Consensus 169 L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~---~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L 245 (1117)
+++|++|+|++|++++..|..|+.+++|++|++++|+.... ..+..++++++|++|++++|+++.. +.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~-------- 214 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TG-------- 214 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HH--------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HH--------
Confidence 88899999999999887778888888888888888864210 1112234555555555555555321 10
Q ss_pred ceeecccccccccCCc-CCCCCCCCcEEecCCCccCCcCCccCCCC---CCCcEEEccCCcCcccCCcCCCCCCCCCEEE
Q 001238 246 QTIAIYTALLSGQIPP-ELGDCTELQYIYLYENALTGSIPSKLGNL---KNLVNLFLWQNNLVGIIPPELGNCSQLSIID 321 (1117)
Q Consensus 246 ~~L~l~~~~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~Ld 321 (1117)
.+. .+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++||
T Consensus 215 -------------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 215 -------------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp -------------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred -------------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 111 13456677777777777776666666665 57777777777777 4566553 6788888
Q ss_pred cCCCcCCCCCccccCCCCCcceEeccccccc
Q 001238 322 ISMNSLTGSIPQTLGNLTSLQELQLSVNQIS 352 (1117)
Q Consensus 322 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (1117)
|++|++++. |. +..+++|++|+|++|+|+
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 888888753 33 567778888888888776
No 336
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.4e-25 Score=250.57 Aligned_cols=267 Identities=16% Similarity=0.203 Sum_probs=175.3
Q ss_pred CcceeeEEecCCCcEEEEecccccccCcCCcccccc--ccCCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCC-C
Q 001238 62 PCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSL--LSLNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGE-I 138 (1117)
Q Consensus 62 ~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~ 138 (1117)
|+.|+++.|+ ...+..++++++.+. |..+..+ ..++.|++++|.+++..+. +.++++|++|+|++|.+++. +
T Consensus 36 c~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 36 CKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp CHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHH
Confidence 4579999886 334556666665543 3344555 6666777777776655444 45666777777777766544 6
Q ss_pred chhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCC-CCCCC-CcccccCcccchhhhccCCCCCCCCCCcccc
Q 001238 139 PRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDN-QLTDA-IPATIGKLKNLEAIRAGGNKNLGGSLPHEIG 216 (1117)
Q Consensus 139 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~ 216 (1117)
|..+..+++|++|+|++|.+++..|..++.+++|++|+|++| .+++. +|..+..+++|++|++++|.
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~----------- 179 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF----------- 179 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------
Confidence 666666666666666666666666666666666666666666 45431 34444445555555544441
Q ss_pred cccccccccccccccccc-CCccccccc-ccceeecccc--ccc-ccCCcCCCCCCCCcEEecCCCc-cCCcCCccCCCC
Q 001238 217 NCTNLVMIGLAETSISGF-LPPTLGLLK-RLQTIAIYTA--LLS-GQIPPELGDCTELQYIYLYENA-LTGSIPSKLGNL 290 (1117)
Q Consensus 217 ~l~~L~~L~l~~~~~~~~-lp~~l~~l~-~L~~L~l~~~--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l 290 (1117)
.+++. ++..+..++ +|++|++++| .+. +.+|..+..+++|++|++++|. +++..+..+.++
T Consensus 180 -------------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 180 -------------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp -------------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred -------------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 44433 345556666 7777777776 333 4456667778889999999998 777777888889
Q ss_pred CCCcEEEccCCc-CcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCC-CCcceEecccccccCcccccccC
Q 001238 291 KNLVNLFLWQNN-LVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNL-TSLQELQLSVNQISGEIPAQIGN 361 (1117)
Q Consensus 291 ~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~ 361 (1117)
++|++|++++|. +.......+.++++|+.|++++| ++.. .+..+ .+|+.|++++|++++..|..+++
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 999999999985 32222225778999999999998 4422 33333 34778889999999888887765
No 337
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.6e-22 Score=218.01 Aligned_cols=203 Identities=20% Similarity=0.238 Sum_probs=116.6
Q ss_pred cCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCc-CCCCCccccCCCCCcceEeccc-ccccCcccccc
Q 001238 282 SIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNS-LTGSIPQTLGNLTSLQELQLSV-NQISGEIPAQI 359 (1117)
Q Consensus 282 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~ 359 (1117)
.+|. +. ++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|+|++ |++++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 33 267777777777776655567777777777777775 6655555666777777777776 67765555666
Q ss_pred cCCCCCcEEEecCccccCCCCcccccccchH---HHHhccc-cccccCCCCCCcccccc-eeecccccccCCCcccccCC
Q 001238 360 GNCQRLAQIELDNNQITGAIPSEFGNLSNLT---LLFVWHN-RLEGEIPPSISNCQNLE-AVDLSQNGLTGPIPRGIFQL 434 (1117)
Q Consensus 360 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l 434 (1117)
.++++|++|++++|++++ +|. |..+++|+ .|++++| ++++..+..|..+++|+ .|++++|+++ .+|..
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~---- 174 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY---- 174 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT----
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh----
Confidence 667777777777776664 443 54444444 5555555 44444444455555555 5555555554 23332
Q ss_pred CCCCeeeccCccCCCCCCCCcccccccceeccCCCc-ccccCCCCcCCC-CCCCEEEccCCcCCCCCCcccccCCCCceE
Q 001238 435 KKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNK-LTGFIPPEIGNL-KNLNFLDLGSNRLTGSIPDEITGCRNLTFL 512 (1117)
Q Consensus 435 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 512 (1117)
.|.. ++|++|++++|+ +++..+..|.++ ++|+.|+|++|++++. |.. .+++|+.|
T Consensus 175 -------------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L 231 (239)
T 2xwt_C 175 -------------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKEL 231 (239)
T ss_dssp -------------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEE
T ss_pred -------------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCcee
Confidence 3333 455555555553 554444555555 6666666666666533 222 45566666
Q ss_pred EccCC
Q 001238 513 DVHSN 517 (1117)
Q Consensus 513 ~Ls~N 517 (1117)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66554
No 338
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=7e-22 Score=214.57 Aligned_cols=180 Identities=22% Similarity=0.262 Sum_probs=99.4
Q ss_pred CCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEcc
Q 001238 436 KLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVH 515 (1117)
Q Consensus 436 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 515 (1117)
..++++++++.++. +|..+. +.++.|++++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34555666666553 333332 345555555555555444455555555555555555554444445555555555555
Q ss_pred CCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecccccccccc
Q 001238 516 SNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNI 595 (1117)
Q Consensus 516 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 595 (1117)
+|+|++ +++..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..
T Consensus 92 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLAS------------------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccc------------------------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 555554 44444444555555555555555444444555555555555555555444
Q ss_pred ccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCC
Q 001238 596 PASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGD 643 (1117)
Q Consensus 596 p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ 643 (1117)
+..+..++++ +.|+|++|+|++..+..|..+++|+.|+|++|+++++
T Consensus 148 ~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNL-QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCC-CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 4345455554 4555555555555566677888889999999999887
No 339
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.4e-22 Score=216.62 Aligned_cols=197 Identities=18% Similarity=0.248 Sum_probs=98.6
Q ss_pred CCCeeeccCccCCCCCCCCcccccccceeccCCCc-ccccCCCCcCCCCCCCEEEccC-CcCCCCCCcccccCCCCceEE
Q 001238 436 KLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNK-LTGFIPPEIGNLKNLNFLDLGS-NRLTGSIPDEITGCRNLTFLD 513 (1117)
Q Consensus 436 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 513 (1117)
+|++|++++|+++++.+..|.++++|++|++++|+ +++..+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555555544455555555555555554 5544444555555555555555 555544445555555555555
Q ss_pred ccCCccccccchhhhcccccc---cccccCC-cCCCCCCCCcCCCcccc-EEeccccccCCCCCcccccccceeEEeccc
Q 001238 514 VHSNSIAGNLPAGLHQLVRLQ---FADLSDN-SVGGMLSPDLGSLSSLT-KLVLNKNRFAGSIPSQLGSCVKLQLLDLSS 588 (1117)
Q Consensus 514 Ls~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 588 (1117)
+++|++++ +|. |..+++|+ .|++++| .++++++..|.++++|+ .|++++|+++...+..|.. .+|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555554 232 44444444 4444444 44444444444444444 4444444444222223332 4444444444
Q ss_pred cccccccccccCCchhHHHhhcCCCCcccCCccccccCC-CCccEEeccCccccCCcchhhhcccceEEEeecc
Q 001238 589 NQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGL-NKLGILDLSHNELSGDLHFLAELQNLVVLNVSHN 661 (1117)
Q Consensus 589 N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l-~~L~~LdLs~N~l~~~~~~l~~l~~L~~L~ls~N 661 (1117)
|+ .+++..+..|..+ ++|+.|||++|++++.++. .+++|+.|+++++
T Consensus 189 n~------------------------~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NK------------------------YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CT------------------------TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CC------------------------CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 42 1333333444555 5556666666666543332 4455556665554
No 340
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=227.54 Aligned_cols=198 Identities=19% Similarity=0.192 Sum_probs=107.1
Q ss_pred CCEEEcCCCcCCCCCcccc--CCCCCcceEecccccccCccc----ccccCCCCCcEEEecCccccCCCCcccccccchH
Q 001238 317 LSIIDISMNSLTGSIPQTL--GNLTSLQELQLSVNQISGEIP----AQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLT 390 (1117)
Q Consensus 317 L~~LdLs~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 390 (1117)
|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|++++|++++..+..|+.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444433 444444444444444443222 2223444445555555544444444444444444
Q ss_pred HHHhcccccccc---C-CCCCCcccccceeecccccccCCCcc----cccCCCCCCeeeccCccCCCCCCCCcccc---c
Q 001238 391 LLFVWHNRLEGE---I-PPSISNCQNLEAVDLSQNGLTGPIPR----GIFQLKKLNKLLLLSNNLSGVIPPEMGNC---S 459 (1117)
Q Consensus 391 ~L~L~~N~l~~~---~-~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~ 459 (1117)
+|+|++|++.+. . +..+..+++|++|+|++|+++. ++. .+..+++|++|+|++|+|++..|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 444444444321 1 1223566777777777777762 333 23456777777777777777666666555 4
Q ss_pred ccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccc
Q 001238 460 SLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIA 520 (1117)
Q Consensus 460 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 520 (1117)
+|++|++++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++|+.|+|++|+|+
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6666667666666 4454443 5677777777777643 32 455666666666666665
No 341
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.4e-21 Score=212.14 Aligned_cols=182 Identities=21% Similarity=0.245 Sum_probs=159.6
Q ss_pred cccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEc
Q 001238 411 QNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDL 490 (1117)
Q Consensus 411 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 490 (1117)
.+.++++++++.++ .+|..+. +.++.|+|++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888888 5776655 57889999999998888888899999999999999999888888899999999999
Q ss_pred cCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCC
Q 001238 491 GSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGS 570 (1117)
Q Consensus 491 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 570 (1117)
++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|+++++..|..+++|+.|+|++|+|++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999988888888999999999999999988777788899999999999999999888899999999999999999988
Q ss_pred CCcccccccceeEEecccccccccc
Q 001238 571 IPSQLGSCVKLQLLDLSSNQLSGNI 595 (1117)
Q Consensus 571 ~~~~~~~l~~L~~L~Ls~N~l~~~~ 595 (1117)
.+..|..+++|+.|+|++|++++..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCc
Confidence 8888999999999999999998653
No 342
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.3e-24 Score=252.32 Aligned_cols=254 Identities=17% Similarity=0.222 Sum_probs=140.9
Q ss_pred CCccCCCCCCCcEEEccCCcCccc----CCcCCCCCCCCCEEEcCCC---cCCCCCcccc-------CCCCCcceEeccc
Q 001238 283 IPSKLGNLKNLVNLFLWQNNLVGI----IPPELGNCSQLSIIDISMN---SLTGSIPQTL-------GNLTSLQELQLSV 348 (1117)
Q Consensus 283 ~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~LdLs~N---~l~~~~p~~l-------~~l~~L~~L~Ls~ 348 (1117)
++..+..+++|++|+|++|++.+. ++..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 444555555666666666665543 2233556666666666664 3333444433 5667777777777
Q ss_pred ccccC----cccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeeccccccc
Q 001238 349 NQISG----EIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLT 424 (1117)
Q Consensus 349 N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 424 (1117)
|.+++ .+|..+..+++|++|+|++|.+++..+..+... |.. +..|++.+. .++|++|+|++|+++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~--l~~~~~~~~-------~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE--LAVNKKAKN-------APPLRSIICGRNRLE 172 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH--HHHHHHHHT-------CCCCCEEECCSSCCT
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHH--Hhhhhhccc-------CCCCcEEECCCCCCC
Confidence 77765 355566667777777777777654333333221 111 112222211 145666666666665
Q ss_pred -CCCc---ccccCCCCCCeeeccCccCCC-----CCCCCcccccccceeccCCCccc----ccCCCCcCCCCCCCEEEcc
Q 001238 425 -GPIP---RGIFQLKKLNKLLLLSNNLSG-----VIPPEMGNCSSLIRFRANSNKLT----GFIPPEIGNLKNLNFLDLG 491 (1117)
Q Consensus 425 -~~~p---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~Ls 491 (1117)
+.++ ..+..+++|++|+|++|+|+. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|+|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 2233 234455666666666666652 23335566666666666666664 3455556666666666666
Q ss_pred CCcCCCC----CCccccc--CCCCceEEccCCcccc----ccchhh-hcccccccccccCCcCCCCC
Q 001238 492 SNRLTGS----IPDEITG--CRNLTFLDVHSNSIAG----NLPAGL-HQLVRLQFADLSDNSVGGML 547 (1117)
Q Consensus 492 ~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~i~~~~ 547 (1117)
+|++++. ++..+.. +++|++|+|++|.|++ .+|..+ ..+++|+.|++++|.+++..
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6666543 3444422 6666666666666665 355554 44566666666666666544
No 343
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.2e-24 Score=241.79 Aligned_cols=255 Identities=19% Similarity=0.223 Sum_probs=199.5
Q ss_pred cCCeEeccCCCCCCCchhhhccc--ccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCC-CchhccCCcCCcEE
Q 001238 99 SLNRLVLSGTNLTGSIPKEIASL--NQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGA-IPIQIGNLSSLTQL 175 (1117)
Q Consensus 99 ~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~L~~L~~L 175 (1117)
.++.+++++|++. |..+..+ +++++|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3678888888876 6667777 8888888888888865554 56788888888888888755 77788888888888
Q ss_pred eccCCCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccc-cCCcccccccccceeecccc-
Q 001238 176 FLYDNQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISG-FLPPTLGLLKRLQTIAIYTA- 253 (1117)
Q Consensus 176 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~l~~~- 253 (1117)
+|++|++++..|..++.+++|++|++++|. .+++ .++..+..+++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~------------------------~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCS------------------------GFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCB------------------------SCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCC------------------------CCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 888888877677777666666666666653 2333 24555778899999999999
Q ss_pred ccccc-CCcCCCCCC-CCcEEecCCC--ccC-CcCCccCCCCCCCcEEEccCCc-CcccCCcCCCCCCCCCEEEcCCCc-
Q 001238 254 LLSGQ-IPPELGDCT-ELQYIYLYEN--ALT-GSIPSKLGNLKNLVNLFLWQNN-LVGIIPPELGNCSQLSIIDISMNS- 326 (1117)
Q Consensus 254 ~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~LdLs~N~- 326 (1117)
.+.+. ++..+..++ +|++|+|++| .++ +.+|..+.++++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 88764 677788999 9999999999 565 4677788899999999999999 777778889999999999999996
Q ss_pred CCCCCccccCCCCCcceEecccccccCcccccccCC-CCCcEEEecCccccCCCCccccc
Q 001238 327 LTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNC-QRLAQIELDNNQITGAIPSEFGN 385 (1117)
Q Consensus 327 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~ 385 (1117)
+.......+.++++|++|++++| ++.. .+..+ ..+..|++++|++++..|..++.
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 33222235888999999999999 5432 33333 34777789999999999988765
No 344
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=8.4e-24 Score=245.54 Aligned_cols=239 Identities=18% Similarity=0.217 Sum_probs=155.9
Q ss_pred cccccCCCCCCeeeccCccCCCCCC----CCcccccccceeccCCC---cccccCCCCc-------CCCCCCCEEEccCC
Q 001238 428 PRGIFQLKKLNKLLLLSNNLSGVIP----PEMGNCSSLIRFRANSN---KLTGFIPPEI-------GNLKNLNFLDLGSN 493 (1117)
Q Consensus 428 p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N---~l~~~~~~~~-------~~l~~L~~L~Ls~N 493 (1117)
+..+..+++|++|+|++|+|+...+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3334444444444444444443311 22444555555555543 2333333333 56777777777777
Q ss_pred cCCC----CCCcccccCCCCceEEccCCccccccchhhh----cc---------cccccccccCCcCCCCCC----CCcC
Q 001238 494 RLTG----SIPDEITGCRNLTFLDVHSNSIAGNLPAGLH----QL---------VRLQFADLSDNSVGGMLS----PDLG 552 (1117)
Q Consensus 494 ~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l---------~~L~~L~Ls~N~i~~~~~----~~~~ 552 (1117)
++++ .+|..+..+++|++|+|++|.|++..+..+. .+ ++|+.|++++|+|+.... ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 7775 3566677777777777777777644433333 33 677777777777763222 2455
Q ss_pred CCccccEEeccccccCC-----CCCcccccccceeEEeccccccc----cccccccCCchhHHHhhcCCCCcccCC----
Q 001238 553 SLSSLTKLVLNKNRFAG-----SIPSQLGSCVKLQLLDLSSNQLS----GNIPASLGKIPALAIALNLSWNQICGE---- 619 (1117)
Q Consensus 553 ~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~l~~~L~Ls~N~l~~~---- 619 (1117)
.+++|+.|+|++|+|+. ..+..+..+++|+.|+|++|.++ +.+|..+..+++| +.|+|++|+|++.
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-RELGLNDCLLSARGAAA 263 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC-CEEECTTCCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc-CEEECCCCCCchhhHHH
Confidence 66778888888887762 23446777888888888888885 5677777777777 6788888888765
Q ss_pred cccccc--CCCCccEEeccCccccC----Ccch-h-hhcccceEEEeecccccCCC
Q 001238 620 LPAELT--GLNKLGILDLSHNELSG----DLHF-L-AELQNLVVLNVSHNNFSGRV 667 (1117)
Q Consensus 620 ~p~~l~--~l~~L~~LdLs~N~l~~----~~~~-l-~~l~~L~~L~ls~N~l~~~~ 667 (1117)
+|..+. .+++|+.|+|++|+++. .++. + ..+++|+.|+|++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 566663 48999999999999997 2443 4 56899999999999998543
No 345
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=2.2e-22 Score=221.57 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=119.2
Q ss_pred HhccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCc------------------cchHHHHHHHHHHhccCCCCc
Q 001238 773 DATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDK------------------ISTGAFSSEIATLSRIRHRNI 834 (1117)
Q Consensus 773 ~~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~H~ni 834 (1117)
.....|.+++.||+|+||.||+|...+|+.||||+++.... ....++.+|++++++++|
T Consensus 87 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~--- 163 (282)
T 1zar_A 87 RSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG--- 163 (282)
T ss_dssp HTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---
T ss_pred hCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---
Confidence 34456777899999999999999887799999999964321 124568899999999994
Q ss_pred ceEEeeeecCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCC
Q 001238 835 VRLLGWGANRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGER 914 (1117)
Q Consensus 835 v~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~ 914 (1117)
+++.+++.. +..++||||+++|+|.+ +.. .....++.|+++||+|||++ +|+||||||+||+++ +
T Consensus 164 ~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~ 228 (282)
T 1zar_A 164 LAVPKVYAW-EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-E 228 (282)
T ss_dssp SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-T
T ss_pred CCcCeEEec-cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-C
Confidence 555554433 55699999999999988 432 12346999999999999999 999999999999999 9
Q ss_pred CcceeccccccccccCCCCCccccCCccccccccCChhhhc
Q 001238 915 YESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYAN 955 (1117)
Q Consensus 915 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~ 955 (1117)
+.+||+|||+|+.. ..|+|||++.
T Consensus 229 ~~vkl~DFG~a~~~-----------------~~~~a~e~l~ 252 (282)
T 1zar_A 229 EGIWIIDFPQSVEV-----------------GEEGWREILE 252 (282)
T ss_dssp TEEEECCCTTCEET-----------------TSTTHHHHHH
T ss_pred CcEEEEECCCCeEC-----------------CCCCHHHHHH
Confidence 99999999999743 3478999875
No 346
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.3e-21 Score=223.57 Aligned_cols=240 Identities=20% Similarity=0.186 Sum_probs=171.0
Q ss_pred cEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCc-cccCCCCCcce-Eecc
Q 001238 270 QYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIP-QTLGNLTSLQE-LQLS 347 (1117)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~L~~-L~Ls 347 (1117)
+.++.++++++ .+|..+. +++++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| ..|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778888888 6777663 578888888888886666678888888888888888866554 45778887765 5666
Q ss_pred cccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhcc-ccccccCCCCCCccc-ccceeecccccccC
Q 001238 348 VNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWH-NRLEGEIPPSISNCQ-NLEAVDLSQNGLTG 425 (1117)
Q Consensus 348 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~ 425 (1117)
+|+++...|..|.++++|++|++++|+++...+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 7888877788888888888888888888876666666667777777755 566655555666654 5778888888887
Q ss_pred CCcccccCCCCCCeeeccC-ccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCC-cCCCCCCccc
Q 001238 426 PIPRGIFQLKKLNKLLLLS-NNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSN-RLTGSIPDEI 503 (1117)
Q Consensus 426 ~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~ 503 (1117)
.+|...+...+|++|++++ |.++.+.+..|.++++|++|++++|+|+...+..|. +|+.|.+.++ .++ .+| .+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~-~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLK-KLP-TL 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCC-CCC-CT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcC-cCC-Cc
Confidence 4666666667788888864 566655556777888888888888888755444444 4444444333 333 455 36
Q ss_pred ccCCCCceEEccCCc
Q 001238 504 TGCRNLTFLDVHSNS 518 (1117)
Q Consensus 504 ~~l~~L~~L~Ls~N~ 518 (1117)
..+++|+.++++++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 677777777776543
No 347
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=2e-21 Score=222.01 Aligned_cols=200 Identities=20% Similarity=0.192 Sum_probs=89.8
Q ss_pred CEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCC-cccccccchHH-HHhc
Q 001238 318 SIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIP-SEFGNLSNLTL-LFVW 395 (1117)
Q Consensus 318 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~L~ 395 (1117)
+.++.++++++ .+|..+. +++++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 3444331 345555555555554333455555555555555555543333 24444444332 3334
Q ss_pred cccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccC-ccCCCCCCCCccccc-ccceeccCCCcccc
Q 001238 396 HNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLS-NNLSGVIPPEMGNCS-SLIRFRANSNKLTG 473 (1117)
Q Consensus 396 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~ 473 (1117)
+|+++...|..|..+++|++|++++|++++..+..+....++..|++.+ |++..+.+..|..+. .++.|++++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 4555544455555555555555555555543333333444444444433 334433333333332 34444444444442
Q ss_pred cCCCCcCCCCCCCEEEccC-CcCCCCCCcccccCCCCceEEccCCcccc
Q 001238 474 FIPPEIGNLKNLNFLDLGS-NRLTGSIPDEITGCRNLTFLDVHSNSIAG 521 (1117)
Q Consensus 474 ~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 521 (1117)
+.+..| ...+|+.|++++ |.++.+.++.|.++++|++|+|++|+|+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 222222 223444444432 33332222334444444444444444443
No 348
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.4e-21 Score=216.96 Aligned_cols=216 Identities=25% Similarity=0.384 Sum_probs=134.8
Q ss_pred ccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceec
Q 001238 386 LSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFR 465 (1117)
Q Consensus 386 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 465 (1117)
+.++..+.+..+.+++.+ .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~ 91 (308)
T 1h6u_A 18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE 91 (308)
T ss_dssp HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred HHHHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE
Confidence 445566666666666432 24466777777777777763 44 46667777777777777775443 66677777777
Q ss_pred cCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCC
Q 001238 466 ANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGG 545 (1117)
Q Consensus 466 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 545 (1117)
+++|++++. ..+..+++|++|+|++|++++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 92 L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence 777777653 2566677777777777777643 2 26667777777777777665433 5566666666666666655
Q ss_pred CCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCcccccc
Q 001238 546 MLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELT 625 (1117)
Q Consensus 546 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~ 625 (1117)
+.+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|+++ +..| +.
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~-------------------------~~~~--l~ 214 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS-------------------------DVSP--LA 214 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC-------------------------BCGG--GT
T ss_pred Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC-------------------------cccc--cc
Confidence 443 5555555555555555554332 445555555555555554 3222 56
Q ss_pred CCCCccEEeccCccccCCc
Q 001238 626 GLNKLGILDLSHNELSGDL 644 (1117)
Q Consensus 626 ~l~~L~~LdLs~N~l~~~~ 644 (1117)
.+++|+.|+|++|++++.+
T Consensus 215 ~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TCTTCCEEEEEEEEEECCC
T ss_pred CCCCCCEEEccCCeeecCC
Confidence 6777788888888887643
No 349
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.6e-21 Score=216.68 Aligned_cols=213 Identities=24% Similarity=0.369 Sum_probs=134.8
Q ss_pred cccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEc
Q 001238 411 QNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDL 490 (1117)
Q Consensus 411 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 490 (1117)
..+..+.+..+.+++.+ .+..+++|++|++++|.++.. + .+..+++|++|++++|++++..+ +..+++|++|+|
T Consensus 19 ~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L 92 (308)
T 1h6u_A 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (308)
T ss_dssp HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEc
Confidence 34445556666665422 234567777777777777643 3 46667777777777777765443 666777777777
Q ss_pred cCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCC
Q 001238 491 GSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGS 570 (1117)
Q Consensus 491 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 570 (1117)
++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.++++.+ +..++
T Consensus 93 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~--------------- 151 (308)
T 1h6u_A 93 SGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLT--------------- 151 (308)
T ss_dssp CSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCT---------------
T ss_pred cCCcCCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCC---------------
Confidence 77776643 256666667777777666665321 5555555555555555554433 44444
Q ss_pred CCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcchhhhc
Q 001238 571 IPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHFLAEL 650 (1117)
Q Consensus 571 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~l~~l 650 (1117)
+|+.|+|++|++++ ++. +..++++ +.|+|++|++++..+ +..+++|+.|+|++|++++..+ +..+
T Consensus 152 ---------~L~~L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l 216 (308)
T 1h6u_A 152 ---------NLQYLSIGNAQVSD-LTP-LANLSKL-TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANT 216 (308)
T ss_dssp ---------TCCEEECCSSCCCC-CGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTC
T ss_pred ---------CccEEEccCCcCCC-Chh-hcCCCCC-CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCC
Confidence 44455555554442 222 4444444 445555555554333 6788999999999999997664 8899
Q ss_pred ccceEEEeecccccC
Q 001238 651 QNLVVLNVSHNNFSG 665 (1117)
Q Consensus 651 ~~L~~L~ls~N~l~~ 665 (1117)
++|+.|+|++|++++
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 999999999999986
No 350
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.2e-21 Score=232.95 Aligned_cols=185 Identities=29% Similarity=0.395 Sum_probs=99.9
Q ss_pred CCeEeccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccC
Q 001238 100 LNRLVLSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYD 179 (1117)
Q Consensus 100 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~ 179 (1117)
|+.|+|++|++++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.+ +|++|+|++
T Consensus 61 L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp CSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred ccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 4455666666654 555442 56777777777776 566 335566666666666664 555 444 667777777
Q ss_pred CCCCCCCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccC
Q 001238 180 NQLTDAIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQI 259 (1117)
Q Consensus 180 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~ 259 (1117)
|+|++ +|. .+
T Consensus 130 N~l~~-lp~---~l------------------------------------------------------------------ 139 (571)
T 3cvr_A 130 NQLTM-LPE---LP------------------------------------------------------------------ 139 (571)
T ss_dssp SCCSC-CCC---CC------------------------------------------------------------------
T ss_pred CcCCC-CCC---cC------------------------------------------------------------------
Confidence 66654 332 11
Q ss_pred CcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCC
Q 001238 260 PPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLT 339 (1117)
Q Consensus 260 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 339 (1117)
++|++|+|++|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+|. |..
T Consensus 140 -------~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-- 200 (571)
T 3cvr_A 140 -------ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-- 200 (571)
T ss_dssp -------TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---
T ss_pred -------ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--
Confidence 233333444444432 232 23444444444444443 333 33 44555555555555 3333 332
Q ss_pred Cc-------ceEecccccccCcccccccCCCCCcEEEecCccccCCCCccccc
Q 001238 340 SL-------QELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGN 385 (1117)
Q Consensus 340 ~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 385 (1117)
+| +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..|..
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 44 67777777776 45666666777777777777777666655544
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.9e-20 Score=194.58 Aligned_cols=181 Identities=22% Similarity=0.289 Sum_probs=127.4
Q ss_pred ceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCC
Q 001238 414 EAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSN 493 (1117)
Q Consensus 414 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 493 (1117)
+.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777776 455544 347777888888777766666777777777777777777666666777777777777777
Q ss_pred cCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCc
Q 001238 494 RLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPS 573 (1117)
Q Consensus 494 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 573 (1117)
++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|+++++.+..|..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 7776666667777777777777777776666666777777777777777777666666777777777777776553
Q ss_pred ccccccceeEEeccccccccccccccCCchh
Q 001238 574 QLGSCVKLQLLDLSSNQLSGNIPASLGKIPA 604 (1117)
Q Consensus 574 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 604 (1117)
.++.|+.|+++.|+++|.+|..++.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3446666777777777777766665543
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=9.8e-20 Score=218.60 Aligned_cols=191 Identities=26% Similarity=0.374 Sum_probs=126.4
Q ss_pred CCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEec
Q 001238 292 NLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELD 371 (1117)
Q Consensus 292 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 371 (1117)
+|+.|+|++|++++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888886 666553 67888888888888 566 446778888888888875 555 554 77777777
Q ss_pred CccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCC
Q 001238 372 NNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVI 451 (1117)
Q Consensus 372 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 451 (1117)
+|+|++ +|. .+++|+.|++++|+|++ +|. .+++|++|+|++|+|++ +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-------------------------lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-------------------------LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-------------------------CCC---cCCCcCEEECCCCCCCC-c
Confidence 777775 443 34455555555555543 332 23444444555554444 2
Q ss_pred CCCcccccccceeccCCCcccccCCCCcCC-----CCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchh
Q 001238 452 PPEMGNCSSLIRFRANSNKLTGFIPPEIGN-----LKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAG 526 (1117)
Q Consensus 452 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 526 (1117)
|. |. ++|+.|++++|+|+ .+|. |.. .+.|+.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+|..
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 33 33 45555555555555 3333 333 122399999999998 57888888999999999999999999988
Q ss_pred hhcccc
Q 001238 527 LHQLVR 532 (1117)
Q Consensus 527 ~~~l~~ 532 (1117)
|..+..
T Consensus 250 l~~l~~ 255 (571)
T 3cvr_A 250 LSQQTA 255 (571)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 877654
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.2e-19 Score=190.98 Aligned_cols=151 Identities=22% Similarity=0.244 Sum_probs=77.7
Q ss_pred EEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEeccccc
Q 001238 271 YIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQ 350 (1117)
Q Consensus 271 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 350 (1117)
.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555555555 344333 2355556666665554444445555566666666665554444445555555555555555
Q ss_pred ccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeeccccccc
Q 001238 351 ISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLT 424 (1117)
Q Consensus 351 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 424 (1117)
+++..+..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 55444444555555555555555555444444444444444444444444333333444445555555555443
No 354
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.4e-20 Score=234.66 Aligned_cols=269 Identities=18% Similarity=0.151 Sum_probs=135.1
Q ss_pred chhHHHHHHHHHhhccCCCCC-CCCCCCCCCCCcceeeEEecCCCcEEEEecccccccCcCCccccccccCCeE-----e
Q 001238 31 VNRQGEALLSWKRNWKGSDDG-LSNWSPSDETPCKWFGVSCNLNNQVVGLDLRYVDLLGHVPTNFTSLLSLNRL-----V 104 (1117)
Q Consensus 31 ~~~~~~aLl~~k~~~~~~~~~-l~sW~~~~~~~C~W~gv~C~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L-----~ 104 (1117)
...++++|+++......+... .++|.......+.|.+++++ ..+|+.++|.++++.. .+..+.....|..+ +
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~ 207 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDD 207 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcc
Confidence 356889999999886544322 45786555556889999997 4778999998887765 34333333333332 2
Q ss_pred ccCCCCCCCchhhhcccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCC
Q 001238 105 LSGTNLTGSIPKEIASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTD 184 (1117)
Q Consensus 105 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~ 184 (1117)
++.|++. ..|..+..+..|++|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|++|++|++|+|++|+|+
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3334444 55788999999999999999998 89988999999999999999999 89999999999999999999999
Q ss_pred CCcccccCcccchhhhccCCCCCCCCCCccccccccccccccccccccccCCccccccccc-ceeecccccccccCCcCC
Q 001238 185 AIPATIGKLKNLEAIRAGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRL-QTIAIYTALLSGQIPPEL 263 (1117)
Q Consensus 185 ~~p~~~~~l~~L~~L~l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L-~~L~l~~~~l~~~~p~~l 263 (1117)
.+|..|+.|++|++|+|++|.+ +.+|..|+++++|+.|+|++|.+++.+|..+..+... ..+++.+|.+.+.+|..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l--~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMV--TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCC--CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred ccChhhcCCCCCCEEECCCCCC--CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 7899999999999999999975 4789889999999999999999988888777655322 23566666666666543
Q ss_pred CCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCC
Q 001238 264 GDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTG 329 (1117)
Q Consensus 264 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~ 329 (1117)
|+.|+++.|... -..++ .+.+..+..+.++..+....+++|-+.+
T Consensus 361 -----l~~l~l~~n~~~---~~~~~-------------~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 361 -----RRFIEINTDGEP---QREYD-------------SLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp --------------------------------------------------------------CCCG
T ss_pred -----cceeEeeccccc---ccccC-------------Cccccccchhhcccccceeeeecccccc
Confidence 334445444110 01111 2333334445556666777778887753
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=9.3e-19 Score=212.62 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=146.9
Q ss_pred cccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCccccccccee
Q 001238 385 NLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRF 464 (1117)
Q Consensus 385 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 464 (1117)
.+.++..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|+|++..+ +..+++|+.|
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 35566777777777765433 4567778888888888774 44 46777888888888888876554 7778888888
Q ss_pred ccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCC
Q 001238 465 RANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVG 544 (1117)
Q Consensus 465 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 544 (1117)
+|++|+|++. ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.|.
T Consensus 93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 8888888753 3677888888888888888753 4577888888888888888765 56777888888888888887
Q ss_pred CCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccc
Q 001238 545 GMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPAS 598 (1117)
Q Consensus 545 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 598 (1117)
++.+ +..+++|+.|+|++|+|.+. ..+..+++|+.|+|++|++++.....
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 7765 77888888888888888754 35777888888888888887543333
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=6.1e-19 Score=195.56 Aligned_cols=193 Identities=21% Similarity=0.324 Sum_probs=155.4
Q ss_pred cccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCccccccccee
Q 001238 385 NLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRF 464 (1117)
Q Consensus 385 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 464 (1117)
.+.++..+.+..+.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 22 ~l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L 95 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWL 95 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEE
Confidence 3556677777777776543 34577888999999998874 44 47778889999999999887654 8888899999
Q ss_pred ccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCC
Q 001238 465 RANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVG 544 (1117)
Q Consensus 465 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 544 (1117)
++++|++++. ..+..+++|++|+|++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|+|+
T Consensus 96 ~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 96 FLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp ECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 9999988863 3488889999999999998864 5688889999999999998865 57888889999999999988
Q ss_pred CCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecccccccc
Q 001238 545 GMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSG 593 (1117)
Q Consensus 545 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 593 (1117)
++.+ +..+++|+.|++++|.|++. + .+..+++|+.|++++|+++.
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 8765 88888999999999988854 3 47888899999999998874
No 357
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4.6e-19 Score=187.80 Aligned_cols=157 Identities=22% Similarity=0.274 Sum_probs=110.1
Q ss_pred ceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCC
Q 001238 462 IRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDN 541 (1117)
Q Consensus 462 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 541 (1117)
+.+++++|.++. +|..+. ++|+.|+|++|+|+++.+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567777777773 454443 56777777777777666667777777777777777777766777777777777777777
Q ss_pred cCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCcc
Q 001238 542 SVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELP 621 (1117)
Q Consensus 542 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p 621 (1117)
+|+.++...|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ +..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------~~~~ 145 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-------------------------TIAK 145 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------------CCCT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-------------------------EECH
Confidence 777666666666666666666666666666666666666666666666655 3444
Q ss_pred ccccCCCCccEEeccCccccCCcch
Q 001238 622 AELTGLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 622 ~~l~~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
..|..+++|+.|+|++|++.|++..
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 5567788899999999999987654
No 358
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=188.41 Aligned_cols=136 Identities=20% Similarity=0.218 Sum_probs=85.5
Q ss_pred ceEEccCCccccccc-hhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccc
Q 001238 510 TFLDVHSNSIAGNLP-AGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSS 588 (1117)
Q Consensus 510 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 588 (1117)
++|+|++|+|++..+ ..|..+++|+.|+|++|+|+++.+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 444444444444322 2344444455555555555555555555555666666666666655555566666666666666
Q ss_pred cccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch
Q 001238 589 NQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 589 N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
|+|++..|..|..+++| +.|+|++|+|++..|..|..+++|+.|+|++|+|+|+++.
T Consensus 115 N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSV-RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp SCCCCBCTTSSTTCTTC-SEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CcCCeECHhHcCCCccC-CEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 66665556666666666 5666666666666677888889999999999999998764
No 359
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=1e-20 Score=228.54 Aligned_cols=216 Identities=23% Similarity=0.215 Sum_probs=140.4
Q ss_pred cccccCcEeeccCCCcCCCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCCcccccCcccchh
Q 001238 119 ASLNQLNYLDLSENSLTGEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAIPATIGKLKNLEA 198 (1117)
Q Consensus 119 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 198 (1117)
+.+++|+.|+|++|+++ .+|.+++.|++|+.|++++|.....+|..+ ..+.+.+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 67889999999999997 899999999999999997765321222111 122344567777777777777
Q ss_pred hh-ccCCCCCCCCCCccccccccccccccccccccccCCcccccccccceeecccccccccCCcCCCCCCCCcEEecCCC
Q 001238 199 IR-AGGNKNLGGSLPHEIGNCTNLVMIGLAETSISGFLPPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYEN 277 (1117)
Q Consensus 199 L~-l~~n~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n 277 (1117)
|+ ++.|. +++|..+.+.+|.+....+ ..|+.|+|++|
T Consensus 414 L~~l~~n~------------~~~L~~l~l~~n~i~~l~~------------------------------~~L~~L~Ls~n 451 (567)
T 1dce_A 414 VDPMRAAY------------LDDLRSKFLLENSVLKMEY------------------------------ADVRVLHLAHK 451 (567)
T ss_dssp HCGGGHHH------------HHHHHHHHHHHHHHHHHHH------------------------------TTCSEEECTTS
T ss_pred Ccchhhcc------------cchhhhhhhhcccccccCc------------------------------cCceEEEecCC
Confidence 77 54442 3445555555555543211 13566777777
Q ss_pred ccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcc-c
Q 001238 278 ALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEI-P 356 (1117)
Q Consensus 278 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p 356 (1117)
+|++ +|. |+++++|+.|+|++|+|+ .+|..|+++++|+.|+|++|+|++ +| .++.+++|++|+|++|+|++.. |
T Consensus 452 ~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 452 DLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp CCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT
T ss_pred CCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc
Confidence 7664 554 666777777777777776 566667777777777777777774 55 5667777777777777777655 6
Q ss_pred ccccCCCCCcEEEecCccccCCCCcc---cccccchHHHH
Q 001238 357 AQIGNCQRLAQIELDNNQITGAIPSE---FGNLSNLTLLF 393 (1117)
Q Consensus 357 ~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~ 393 (1117)
..|+.+++|+.|+|++|++++.+|.. +..+++|+.|+
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 66777777777777777776554422 22355555553
No 360
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=6.9e-19 Score=195.10 Aligned_cols=190 Identities=29% Similarity=0.354 Sum_probs=111.1
Q ss_pred CCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEcc
Q 001238 436 KLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVH 515 (1117)
Q Consensus 436 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 515 (1117)
++..+.+..+.+.+. ..+..+++|+.|++++|.+++. + .+..+++|++|+|++|++++..+ +..+++|++|+++
T Consensus 25 ~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 344445555555533 2234566677777777766644 2 36666677777777777765433 6666677777777
Q ss_pred CCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecccccccccc
Q 001238 516 SNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNI 595 (1117)
Q Consensus 516 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 595 (1117)
+|.+++. + .+..+++|+.|++++|+++++ ..+..+++|+.|++++|++++. ..+..+++|+.|+|++|+++
T Consensus 99 ~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~--- 169 (291)
T 1h6t_A 99 ENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--- 169 (291)
T ss_dssp SSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC---
T ss_pred CCcCCCC-h-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc---
Confidence 7766642 2 255566666666666666554 2355555555555555555543 34555555555555555554
Q ss_pred ccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcchhhhcccceEEEeecccccC
Q 001238 596 PASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHFLAELQNLVVLNVSHNNFSG 665 (1117)
Q Consensus 596 p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~l~~l~~L~~L~ls~N~l~~ 665 (1117)
+..| +..+++|+.|+|++|+++.. +.+..+++|+.|++++|+++.
T Consensus 170 ----------------------~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 ----------------------DIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ----------------------CCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred ----------------------cchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccC
Confidence 3333 55666666677777766643 346666677777777776654
No 361
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.1e-19 Score=202.84 Aligned_cols=181 Identities=25% Similarity=0.230 Sum_probs=111.7
Q ss_pred CeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcC-CCCCCCEEEccCCcCCCCCCcccccCCCCceEEccC
Q 001238 438 NKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIG-NLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHS 516 (1117)
Q Consensus 438 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 516 (1117)
+.+++++|+++. +|..+. ..++.|+|++|+|++..+..|. ++++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 466777777764 344333 3466667777776666666665 666666666666666666666666666666666666
Q ss_pred CccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCccc---ccccceeEEecccccccc
Q 001238 517 NSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQL---GSCVKLQLLDLSSNQLSG 593 (1117)
Q Consensus 517 N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~ 593 (1117)
|+|++..+..|..+++|+.|+|++|+|+.+.+..|.++++|+.|+|++|+|++..+..| ..+++|+.|||++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 66666555556666666666666666666666666666666666666666654444444 34555555555555555
Q ss_pred ccccccCCchhHHHhhcCCCCcccCCccccccCCCC--ccEEeccCccccCCcch
Q 001238 594 NIPASLGKIPALAIALNLSWNQICGELPAELTGLNK--LGILDLSHNELSGDLHF 646 (1117)
Q Consensus 594 ~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~--L~~LdLs~N~l~~~~~~ 646 (1117)
+..+..|..++. |+.|+|++|+|.|++..
T Consensus 177 ------------------------~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 177 ------------------------KLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp ------------------------CCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred ------------------------ccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 333344455554 47889999999988753
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=9.8e-19 Score=200.49 Aligned_cols=177 Identities=22% Similarity=0.166 Sum_probs=147.4
Q ss_pred ceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcc-cccccceeccCCCcccccCCCCcCCCCCCCEEEccC
Q 001238 414 EAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMG-NCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGS 492 (1117)
Q Consensus 414 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 492 (1117)
+.+++++|.++ .+|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 4776654 3578888888888888777787 888888888888888888778888888999999999
Q ss_pred CcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCc---CCCccccEEeccccccCC
Q 001238 493 NRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDL---GSLSSLTKLVLNKNRFAG 569 (1117)
Q Consensus 493 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~---~~l~~L~~L~L~~N~l~~ 569 (1117)
|+|++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++++...| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99887777788888999999999999988888888889999999999999988887777 568999999999999997
Q ss_pred CCCcccccccc--eeEEecccccccc
Q 001238 570 SIPSQLGSCVK--LQLLDLSSNQLSG 593 (1117)
Q Consensus 570 ~~~~~~~~l~~--L~~L~Ls~N~l~~ 593 (1117)
..+..|..++. ++.|+|++|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 77777877776 4789999998873
No 363
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=2.1e-20 Score=225.90 Aligned_cols=216 Identities=18% Similarity=0.167 Sum_probs=100.4
Q ss_pred CCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHH
Q 001238 312 GNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTL 391 (1117)
Q Consensus 312 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 391 (1117)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|......|.. +..+.+.+.+|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 45566666777777666 56666666667777776655411011100 0011123344445555555555
Q ss_pred HH-hccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCc
Q 001238 392 LF-VWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNK 470 (1117)
Q Consensus 392 L~-L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 470 (1117)
|+ ++.|.+. .|..+.+++|.++. +|. ..|+.|+|++|+|++ +|. |+.+++|+.|++++|+
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 55 4444321 23334444444432 111 124444444444443 232 4444444444444444
Q ss_pred ccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCcccccc-chhhhcccccccccccCCcCCCCCCC
Q 001238 471 LTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNL-PAGLHQLVRLQFADLSDNSVGGMLSP 549 (1117)
Q Consensus 471 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~~ 549 (1117)
|+ .+|..|+++++|+.|+|++|+|++ +| .|..+++|++|+|++|+|++.. |..|..+++|+.|+|++|.++++++.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 44 334444445555555555555543 33 4444555555555555554443 44455555555555555554444332
Q ss_pred C---cCCCccccEEe
Q 001238 550 D---LGSLSSLTKLV 561 (1117)
Q Consensus 550 ~---~~~l~~L~~L~ 561 (1117)
. +..+++|+.|+
T Consensus 552 ~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 552 QERLAEMLPSVSSIL 566 (567)
T ss_dssp TTHHHHHCTTCSEEE
T ss_pred HHHHHHHCcccCccC
Confidence 1 12245555554
No 364
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.8e-18 Score=207.22 Aligned_cols=109 Identities=28% Similarity=0.404 Sum_probs=66.3
Q ss_pred CCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCc
Q 001238 262 ELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSL 341 (1117)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 341 (1117)
.+..+++|++|+|++|.+++ + ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence 45566666666666666664 2 3466666666666666666643 456666666666666666665444 6666666
Q ss_pred ceEecccccccCcccccccCCCCCcEEEecCccccCC
Q 001238 342 QELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGA 378 (1117)
Q Consensus 342 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 378 (1117)
+.|+|++|+|++. + .+..+++|+.|+|++|.+.+.
T Consensus 178 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 6666666666643 2 356666666666666666543
No 365
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=4.1e-18 Score=180.50 Aligned_cols=152 Identities=22% Similarity=0.304 Sum_probs=85.7
Q ss_pred ceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCC
Q 001238 414 EAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSN 493 (1117)
Q Consensus 414 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 493 (1117)
+.+++++|.++ .+|..+. ++|+.|++++|+|+++.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45667777666 3555443 45666666666666555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCc
Q 001238 494 RLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPS 573 (1117)
Q Consensus 494 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 573 (1117)
+|+...+..|.++++|++|+|++|+|++. .+..|..+++|+.|+|++|+|++..+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCL------------------------RVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCC------------------------CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEe------------------------CHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 55544444445555555555555555544 444455555555555555555555555
Q ss_pred ccccccceeEEeccccccc
Q 001238 574 QLGSCVKLQLLDLSSNQLS 592 (1117)
Q Consensus 574 ~~~~l~~L~~L~Ls~N~l~ 592 (1117)
.|..+++|+.|+|++|.+.
T Consensus 147 ~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCEE
T ss_pred HHhCCCCCCEEEeCCCCcC
Confidence 5666666666666666665
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.8e-18 Score=182.07 Aligned_cols=156 Identities=23% Similarity=0.237 Sum_probs=90.4
Q ss_pred cceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccC
Q 001238 461 LIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSD 540 (1117)
Q Consensus 461 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 540 (1117)
.+.++.+++.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------- 77 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------- 77 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--------------------
Confidence 344555555554 2333222 45555555555555555555555555555555555554
Q ss_pred CcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCc
Q 001238 541 NSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGEL 620 (1117)
Q Consensus 541 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~ 620 (1117)
.++...|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++| +.|+|++|+|++..
T Consensus 78 ----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 78 ----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL-THLALDQNQLKSIP 151 (229)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC-SEEECCSSCCCCCC
T ss_pred ----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC-CEEECCCCcCCccC
Confidence 444444455555555555555555444445555555555555555555 455555555555 45555666665555
Q ss_pred cccccCCCCccEEeccCccccCCcc
Q 001238 621 PAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 621 p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
+..|..+++|+.|+|++|++.|+++
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 5667888899999999999998876
No 367
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.75 E-value=1.2e-18 Score=189.37 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=107.1
Q ss_pred CCCCCeeeecCCeEEEEEEc-CCCcE--EEEEEeecCCcc------------------------chHHHHHHHHHHhccC
Q 001238 778 LTAGNIIGQGRSGIVYKVTL-PSGLT--VAVKRFRASDKI------------------------STGAFSSEIATLSRIR 830 (1117)
Q Consensus 778 ~~~~~~lg~G~fg~Vy~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l~ 830 (1117)
|.+.+.||+|+||.||+|.. .+|+. ||||+++..... ....+.+|+++++++.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999987 68888 999997643111 0135789999999998
Q ss_pred CCCc--ceEEeeeecCCceEEEEEecCC-C----ChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHh-ccCCCceeee
Q 001238 831 HRNI--VRLLGWGANRKTKLLFYDYMPN-G----TLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLH-HDCVPAILHR 902 (1117)
Q Consensus 831 H~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH-~~~~~~ivHr 902 (1117)
|+++ +.++++ +..++||||+.+ | +|.++... .++..+..++.|++.||+||| +. +|+||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~---givHr 195 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEA---ELVHA 195 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTS---CEECS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHC---CEEeC
Confidence 8864 445543 356899999942 4 66665432 224466789999999999999 88 99999
Q ss_pred ccccCeEEEcCCCcceeccccccccc
Q 001238 903 DVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 903 Dlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
||||+|||+++ .++|+|||+|...
T Consensus 196 Dlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 196 DLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp SCSTTSEEESS--SEEECCCTTCEET
T ss_pred CCCHHHEEEcC--cEEEEECcccccC
Confidence 99999999998 9999999999765
No 368
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=4.8e-19 Score=193.17 Aligned_cols=171 Identities=20% Similarity=0.282 Sum_probs=127.0
Q ss_pred cccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCccccccccee
Q 001238 385 NLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRF 464 (1117)
Q Consensus 385 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 464 (1117)
.+.++..+++++|.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|+|++|+|++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 5778899999999988543 57888899999999999884 55 67788888888888888886654 7888888888
Q ss_pred ccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCC
Q 001238 465 RANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVG 544 (1117)
Q Consensus 465 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 544 (1117)
++++|++++. |. +.. ++|+.|+|++|++++. ..+..+++|++|+|++|+|++. + .+..+++|+.|++++|+|+
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 8888888764 32 222 7788888888888753 3577788888888888888764 2 5667777777777777776
Q ss_pred CCCCCCcCCCccccEEeccccccCCC
Q 001238 545 GMLSPDLGSLSSLTKLVLNKNRFAGS 570 (1117)
Q Consensus 545 ~~~~~~~~~l~~L~~L~L~~N~l~~~ 570 (1117)
++ ..+..+++|+.|++++|++.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 66 4556666666666666666544
No 369
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=178.26 Aligned_cols=156 Identities=22% Similarity=0.233 Sum_probs=93.2
Q ss_pred ceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCC
Q 001238 414 EAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSN 493 (1117)
Q Consensus 414 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 493 (1117)
+.+++++|.++ .+|..+.. .+++|+|++|+|++..+. ..|..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~~--~~~~L~L~~N~l~~~~~~-----------------------~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEAT-----------------------GIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TEEECCSSCCS-SCCSCCCT--TCSEEECCSSCCCEECCC-----------------------CCGGGCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccCCCC--CCCEEEcCCCcCCccCch-----------------------hhhccCCCCCEEECCCC
Confidence 45666666666 34544322 334555555555544221 23455555555555555
Q ss_pred cCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCc
Q 001238 494 RLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPS 573 (1117)
Q Consensus 494 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 573 (1117)
+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|+++.+..|..+++|+.|+|++|+|++..|.
T Consensus 68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 55555455555555555555555555555555555555566666666666666666666677777777777777776677
Q ss_pred ccccccceeEEecccccccccc
Q 001238 574 QLGSCVKLQLLDLSSNQLSGNI 595 (1117)
Q Consensus 574 ~~~~l~~L~~L~Ls~N~l~~~~ 595 (1117)
.|..+++|+.|+|++|.+++..
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSG
T ss_pred HhcCCCCCCEEEecCcCCcCCC
Confidence 7777777888888888777543
No 370
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=2.1e-18 Score=215.00 Aligned_cols=189 Identities=22% Similarity=0.281 Sum_probs=108.1
Q ss_pred cCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCC
Q 001238 466 ANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGG 545 (1117)
Q Consensus 466 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 545 (1117)
+..|.+. ..+..|..++.|+.|+|++|++. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+.
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc
Confidence 3344444 45566777777777777777776 55666667777777777777777 566777777777777777777775
Q ss_pred CCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCcccccc
Q 001238 546 MLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELT 625 (1117)
Q Consensus 546 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~ 625 (1117)
+ +..|.++++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.|++.+|..++.+......|+|++|.+++.+|..
T Consensus 285 l-p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-- 360 (727)
T 4b8c_D 285 L-PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-- 360 (727)
T ss_dssp C-CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred c-ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence 5 556777888888888888886 567778888888888898888888888887666555456888899988887754
Q ss_pred CCCCccEEeccCc--------cccCCcch-hhhcccceEEEeecccccC
Q 001238 626 GLNKLGILDLSHN--------ELSGDLHF-LAELQNLVVLNVSHNNFSG 665 (1117)
Q Consensus 626 ~l~~L~~LdLs~N--------~l~~~~~~-l~~l~~L~~L~ls~N~l~~ 665 (1117)
|+.|++++| .|.+..+. +..+..+....+++|-+.+
T Consensus 361 ----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 361 ----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------------------------------------------CCCG
T ss_pred ----cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 456677777 22222221 3445555666677776653
No 371
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=3.3e-17 Score=174.77 Aligned_cols=152 Identities=26% Similarity=0.309 Sum_probs=99.2
Q ss_pred cceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccC
Q 001238 413 LEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGS 492 (1117)
Q Consensus 413 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 492 (1117)
-+.++++++.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|++++|+|+...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777776 4665543 6777777777777777777777777777777777777666556667777777777777
Q ss_pred CcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccC
Q 001238 493 NRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFA 568 (1117)
Q Consensus 493 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 568 (1117)
|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|+++.+..|..+++|+.|+|++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 7777666666677777777777777776 45555555555555555555555554444444444444444444443
No 372
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.5e-17 Score=181.36 Aligned_cols=171 Identities=20% Similarity=0.295 Sum_probs=135.5
Q ss_pred cccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEE
Q 001238 409 NCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFL 488 (1117)
Q Consensus 409 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 488 (1117)
.+.++..+++++|.+++ ++ .+..+++|+.|++++|+|+.. + .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 56677888888888874 44 567788888888888888854 3 67888888888888888886654 8888888888
Q ss_pred EccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccC
Q 001238 489 DLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFA 568 (1117)
Q Consensus 489 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 568 (1117)
+|++|++++. |. +.. ++|++|+|++|+|++. ..+..+++|+.|++++|+|+++. .+..+++|+.|+|++|+|+
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCc
Confidence 8888888853 33 222 7888888888888864 35888888888888888888874 6788888888888888888
Q ss_pred CCCCcccccccceeEEeccccccccc
Q 001238 569 GSIPSQLGSCVKLQLLDLSSNQLSGN 594 (1117)
Q Consensus 569 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ 594 (1117)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 6678888888888888888855
No 373
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.6e-17 Score=171.99 Aligned_cols=175 Identities=21% Similarity=0.211 Sum_probs=106.2
Q ss_pred CEEEccCCcCCCCCCcccccCCCCceEEccCCccccccch-hhhcccccccccccCCcCCCCCCCCcCCCccccEEeccc
Q 001238 486 NFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPA-GLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNK 564 (1117)
Q Consensus 486 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~ 564 (1117)
+.+++++|.++ .+|..+.. +|++|++++|+|++..+. .|..+++|+.|+|++|+|+++.+..|.++++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67788888776 45554432 677777777777655543 255555555555555555555444455555555555555
Q ss_pred cccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCc
Q 001238 565 NRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDL 644 (1117)
Q Consensus 565 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~ 644 (1117)
|+|++..+.. |..+++| +.|+|++|+|++..|..|..+++|+.|+|++|+++|++
T Consensus 88 N~l~~~~~~~------------------------~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKM------------------------FLGLHQL-KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSS------------------------STTCTTC-CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHH------------------------hcCCCCC-CEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 5444444444 4444444 44555555555556667778889999999999999988
Q ss_pred chhhhcccceEEEeecccccCCCCCCcccccCCcccccCCCCCCcC
Q 001238 645 HFLAELQNLVVLNVSHNNFSGRVPDTPFFAKLPLSVLSGNPSLCFS 690 (1117)
Q Consensus 645 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~gN~~~c~~ 690 (1117)
+..+-...++...+..+...+..|. .+.......+..+...|..
T Consensus 143 ~l~~~~~~l~~~~~~~~~~~C~~P~--~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 143 HLAWFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp GGHHHHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred cchHHHHHHHHcCCCCCCCCCCCCh--HHcCCChhhCcHhhcCcCC
Confidence 7533233344446667777766664 3445555566677777753
No 374
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1.8e-18 Score=195.72 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=49.6
Q ss_pred CCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccc-cccccCCcCCCCCCCCcCCCccccEEe
Q 001238 483 KNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQ-FADLSDNSVGGMLSPDLGSLSSLTKLV 561 (1117)
Q Consensus 483 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 561 (1117)
++|+.|+|++|+++.+.+.+|.++++|+.|+|++| +..+.+.+|.++.+|+ .+++.+ .++.+...+|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 44444444444444444444444444444444444 4444444444444444 444444 44445555555555555555
Q ss_pred ccccccCCCCCcccccccceeEEe
Q 001238 562 LNKNRFAGSIPSQLGSCVKLQLLD 585 (1117)
Q Consensus 562 L~~N~l~~~~~~~~~~l~~L~~L~ 585 (1117)
+++|.++.+.+.+|.++++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 555555544455555555555554
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=5.3e-17 Score=168.91 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=75.2
Q ss_pred CCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCC
Q 001238 407 ISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLN 486 (1117)
Q Consensus 407 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 486 (1117)
...+++|+.|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..|+.+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 356667777777777776 455 56666777777777775542 23455555556666655555555555555555555
Q ss_pred EEEccCCcCCCCCCcccccCCCCceEEccCCc-cccccchhhhcccccccccccCCcCCC
Q 001238 487 FLDLGSNRLTGSIPDEITGCRNLTFLDVHSNS-IAGNLPAGLHQLVRLQFADLSDNSVGG 545 (1117)
Q Consensus 487 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 545 (1117)
+|+|++|++++..|..+..+++|++|++++|. ++. +| .+..+++|+.|++++|+|++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC
Confidence 55555555555455555555555555555555 332 22 34444444444444444443
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.2e-16 Score=165.31 Aligned_cols=132 Identities=22% Similarity=0.250 Sum_probs=93.3
Q ss_pred ceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCc-ccccCCCCceEEccCCccccccchhhhcccccccccccC
Q 001238 462 IRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPD-EITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSD 540 (1117)
Q Consensus 462 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 540 (1117)
+.+++++|+++ .+|..+.. +|++|+|++|+|++..+. .|..+++|++|+|++|+|++..|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555554 33443332 666777777777655543 366677777777777777766667777777777777777
Q ss_pred CcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccc
Q 001238 541 NSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIP 596 (1117)
Q Consensus 541 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 596 (1117)
|+|+++.+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77777777777788888888888888888778888888888888888888886654
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.2e-17 Score=188.79 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=117.7
Q ss_pred ccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCc----cCCCCCCCCccccccc
Q 001238 386 LSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSN----NLSGVIPPEMGNCSSL 461 (1117)
Q Consensus 386 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N----~l~~~~~~~~~~l~~L 461 (1117)
+++|+.|+|.+ .++.+.+..|.+|++|+.|++++|.+....+..|..+.++..+.+..+ .........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 44444444444 444333444444444444444444444333333444333333333331 1122223344444444
Q ss_pred c-eeccCCCc-ccccCCCCcCCCCCCCEEEccCCcCCCCCCccc-ccCCCCceEEccCCccccccchhhhcccccccccc
Q 001238 462 I-RFRANSNK-LTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEI-TGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADL 538 (1117)
Q Consensus 462 ~-~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 538 (1117)
+ .+.+.... +.......-....+++.+.+.++-.. .....+ ..+++|+.|+|++|+++.+.+..|.++.+|+.+++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 4 22222211 11110011112345556666554221 111112 23677888888888887777777888888888888
Q ss_pred cCCcCCCCCCCCcCCCcccc-EEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhH
Q 001238 539 SDNSVGGMLSPDLGSLSSLT-KLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPAL 605 (1117)
Q Consensus 539 s~N~i~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l 605 (1117)
.+| +..+...+|.++.+|+ .+.+.+ .++.+.+.+|..|.+|+.|++++|.++...+..|.++++|
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 777 7777888888888887 888877 6666667778888888888888888875555566666655
No 378
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.3e-16 Score=166.01 Aligned_cols=152 Identities=16% Similarity=0.274 Sum_probs=83.0
Q ss_pred cccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEE
Q 001238 241 LLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSII 320 (1117)
Q Consensus 241 ~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 320 (1117)
.+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3344444444444443 233 3555555666666665444 22345556666666666666665555556666666666
Q ss_pred EcCCCcCCCCCccccCCCCCcceEeccccc-ccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccc
Q 001238 321 DISMNSLTGSIPQTLGNLTSLQELQLSVNQ-ISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRL 399 (1117)
Q Consensus 321 dLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 399 (1117)
+|++|.+++..|..++.+++|++|+|++|. ++ .+| .+..+++|++|++++|++++. + .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 666666665555556666666666666665 43 333 455666666666666666542 2 455566666666666655
Q ss_pred c
Q 001238 400 E 400 (1117)
Q Consensus 400 ~ 400 (1117)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 379
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.64 E-value=1.9e-16 Score=177.99 Aligned_cols=136 Identities=16% Similarity=0.172 Sum_probs=101.2
Q ss_pred CCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCcc--------------chH--------HHHHHHHHHhccCCCCc
Q 001238 777 SLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKI--------------STG--------AFSSEIATLSRIRHRNI 834 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~--------------~~~--------~~~~E~~~l~~l~H~ni 834 (1117)
-|.+.+.||+|+||.||+|...+|+.||||+++..... ... ...+|...+.++.+.++
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 38889999999999999999889999999987642100 000 12346666777655443
Q ss_pred c--eEEeeeecCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEc
Q 001238 835 V--RLLGWGANRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLG 912 (1117)
Q Consensus 835 v--~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~ 912 (1117)
. +.+++ ...++||||++|++|..+... .....++.|++.+|.|||+. |||||||||.|||++
T Consensus 176 ~vp~p~~~----~~~~LVME~i~G~~L~~l~~~---------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~ 239 (397)
T 4gyi_A 176 PVPEPIAQ----SRHTIVMSLVDALPMRQVSSV---------PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIR 239 (397)
T ss_dssp SCCCEEEE----ETTEEEEECCSCEEGGGCCCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE
T ss_pred CCCeeeec----cCceEEEEecCCccHhhhccc---------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEe
Confidence 2 22322 123799999999988765432 12356889999999999998 999999999999998
Q ss_pred CCC----------cceeccccccccc
Q 001238 913 ERY----------ESCLADFGLARLV 928 (1117)
Q Consensus 913 ~~~----------~~kl~DfGla~~~ 928 (1117)
+++ .+.|+||+-+...
T Consensus 240 ~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 240 EEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EEECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCCcccccccccceEEEEeCCcccC
Confidence 876 3789999987654
No 380
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=6.1e-15 Score=170.22 Aligned_cols=114 Identities=9% Similarity=0.057 Sum_probs=67.6
Q ss_pred CCCcCCCCCCCEEEccCCcCC-----CCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCC
Q 001238 476 PPEIGNLKNLNFLDLGSNRLT-----GSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPD 550 (1117)
Q Consensus 476 ~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 550 (1117)
...|.++++|+.+++.+|.+. .+.+.+|.++++|+.++|. |.++.+...+|.++.+|+.+++..| ++.+...+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 334444444444444444332 2344555556666666665 3355555555666666666666433 56666677
Q ss_pred cCCCccccEEeccccccCCCCCccccccc-ceeEEeccccccc
Q 001238 551 LGSLSSLTKLVLNKNRFAGSIPSQLGSCV-KLQLLDLSSNQLS 592 (1117)
Q Consensus 551 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 592 (1117)
|.++ +|+.+.+.+|.+.......|..++ .++.|++..|.+.
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7777 777777777777666666777663 6777777777654
No 381
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=5.1e-15 Score=170.89 Aligned_cols=263 Identities=12% Similarity=0.152 Sum_probs=137.0
Q ss_pred CCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEe
Q 001238 291 KNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIEL 370 (1117)
Q Consensus 291 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 370 (1117)
..++.+.+.+ .++.+-...|.++ +|+.+++..| ++......|.+ .+|+.+.+.. .++.+.+..|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4556666654 3444555566664 5777776655 55444445555 3566666654 444444556666666666666
Q ss_pred cCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCC
Q 001238 371 DNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGV 450 (1117)
Q Consensus 371 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 450 (1117)
.+|+++.+....|. ..+|+.+.+..+ ++.+....|.+|++|+.+++..| ++..-...|.+ .+|+.+.+ .|.++.+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence 66666644444444 355555555432 44444455555555555555543 33222222333 45555555 3344444
Q ss_pred CCCCcccccccceeccCCCccc-----ccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccch
Q 001238 451 IPPEMGNCSSLIRFRANSNKLT-----GFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPA 525 (1117)
Q Consensus 451 ~~~~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 525 (1117)
...+|.+|++|+.+.+.+|.+. .+.+..|.++++|+.++|. |.++.+...+|.++++|+.++|..| ++.+...
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4555555555555555554443 2334455555555555555 3344444455555555555555333 4444445
Q ss_pred hhhcccccccccccCCcCCCCCCCCcCCCc-cccEEeccccc
Q 001238 526 GLHQLVRLQFADLSDNSVGGMLSPDLGSLS-SLTKLVLNKNR 566 (1117)
Q Consensus 526 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~L~~N~ 566 (1117)
+|.++ +|+.+++++|.+..+....|.+++ +++.|++..+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 55555 555555555555555555555552 45555555444
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.7e-15 Score=152.99 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=79.1
Q ss_pred CCCCeeeccCccCC-CCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEE
Q 001238 435 KKLNKLLLLSNNLS-GVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLD 513 (1117)
Q Consensus 435 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 513 (1117)
++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 44555555566666666666665544 4555555555555555555544555555555555555
Q ss_pred ccCCccccccchhhhcccccccccccCCcCCCCCC-CCcCCCccccEEeccccccCCCCC---cccccccceeEEecccc
Q 001238 514 VHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLS-PDLGSLSSLTKLVLNKNRFAGSIP---SQLGSCVKLQLLDLSSN 589 (1117)
Q Consensus 514 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N 589 (1117)
|++|.|+ +++. ..+..+++|+.|++++|.+++..+ ..|..+++|+.|++++|
T Consensus 102 Ls~N~l~------------------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLK------------------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCC------------------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccC------------------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 5555555 3322 345555666666666666665444 35666777777777777
Q ss_pred cccccccc
Q 001238 590 QLSGNIPA 597 (1117)
Q Consensus 590 ~l~~~~p~ 597 (1117)
.++ .+|.
T Consensus 158 ~~~-~~~~ 164 (168)
T 2ell_A 158 EDQ-EAPD 164 (168)
T ss_dssp TSC-BCCS
T ss_pred Chh-hccc
Confidence 766 4443
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.5e-15 Score=153.37 Aligned_cols=132 Identities=22% Similarity=0.248 Sum_probs=100.1
Q ss_pred CCCcEEecCCCccC-CcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEe
Q 001238 267 TELQYIYLYENALT-GSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQ 345 (1117)
Q Consensus 267 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 345 (1117)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67788888888887 67777778888888888888888755 6778888888888888888876777777788888888
Q ss_pred cccccccCcc-cccccCCCCCcEEEecCccccCCCC---cccccccchHHHHhcccccc
Q 001238 346 LSVNQISGEI-PAQIGNCQRLAQIELDNNQITGAIP---SEFGNLSNLTLLFVWHNRLE 400 (1117)
Q Consensus 346 Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 400 (1117)
|++|.|++.. +..+..+++|+.|++++|.+++..+ ..|..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888887542 2677788888888888888875544 35666666777777666665
No 384
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=2.6e-14 Score=165.79 Aligned_cols=312 Identities=13% Similarity=0.121 Sum_probs=212.4
Q ss_pred cCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCC
Q 001238 261 PELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTS 340 (1117)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 340 (1117)
.+|.+|++|+.+.|..+ ++..-...|.++++|+.+++.++ ++.+-...|.++++|+.+.+..+ +.......|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45667777777777643 55334456777777777777654 55455566777777777666544 33244445655544
Q ss_pred cceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeeccc
Q 001238 341 LQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQ 420 (1117)
Q Consensus 341 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 420 (1117)
++......... .....|.++.+|+.+.+.++..+ +....|.++.+|+.+.+..| ++......|.++..|+.+.+..
T Consensus 142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccccc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 33333322222 33456777788888887665433 55567777778888877665 5545566778888888888776
Q ss_pred ccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCC
Q 001238 421 NGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIP 500 (1117)
Q Consensus 421 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 500 (1117)
+... +....+....|+.+.+..+ +..+....|.++..|+.+.+..+... .....|.++..++.+....+.+ ..
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~ 290 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PE 290 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CT
T ss_pred CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cc
Confidence 6543 3444555667787777543 44455667888888888888777554 6666788888888888876653 33
Q ss_pred cccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccc
Q 001238 501 DEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVK 580 (1117)
Q Consensus 501 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 580 (1117)
..|.++.+|+.+.+.++ +..+...+|.++.+|+.+++.++ ++.+...+|.++.+|+.+.+..| ++.+...+|.+|.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 56778888888888765 66666777888888888888644 77888888888888888888776 66666778888888
Q ss_pred eeEEecccc
Q 001238 581 LQLLDLSSN 589 (1117)
Q Consensus 581 L~~L~Ls~N 589 (1117)
|+.+++..|
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 888888654
No 385
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=4.2e-14 Score=164.03 Aligned_cols=330 Identities=12% Similarity=0.080 Sum_probs=228.9
Q ss_pred CcccccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCC
Q 001238 236 PPTLGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCS 315 (1117)
Q Consensus 236 p~~l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 315 (1117)
..+|.++.+|+.+.+..+ +...-..+|.+|++|+.++|.++ ++..-...|.++.+|+.+.+..+ +.......|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 344555555666655432 33333456777777777777654 44334456777777777666544 4445555666665
Q ss_pred CCCEEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhc
Q 001238 316 QLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVW 395 (1117)
Q Consensus 316 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 395 (1117)
.+.......... .....|.++++|+.+.+..+... .....|.++.+|+.+.+..| ++.+....|.++..|+.+.+.
T Consensus 141 ~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGVTV--IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccccc--cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 444433333222 23456777778888887655432 55567777788888877766 443555677777777777776
Q ss_pred cccccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccC
Q 001238 396 HNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFI 475 (1117)
Q Consensus 396 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 475 (1117)
.+... +........+|+.+.+..+. +......+.....|+.+.+..+... +....|.++..++.+....+.+.
T Consensus 217 ~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--- 289 (394)
T 4fs7_A 217 NSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--- 289 (394)
T ss_dssp TTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---
T ss_pred CCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---
Confidence 65443 23344455678888876543 3244556777888999888877544 66778889999998888776543
Q ss_pred CCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCc
Q 001238 476 PPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLS 555 (1117)
Q Consensus 476 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 555 (1117)
...|..+.+|+.+.+..+ ++.+...+|.++++|+.++|.++ ++.+...+|.++.+|+.+++..| ++.+...+|.++.
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 357888999999999765 66677788999999999999754 77777889999999999999877 8899999999999
Q ss_pred cccEEeccccccCCCCCcccccccceeEE
Q 001238 556 SLTKLVLNKNRFAGSIPSQLGSCVKLQLL 584 (1117)
Q Consensus 556 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 584 (1117)
+|+.+.+..+ +. .+..+|.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999866 43 345678899998875
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.6e-15 Score=148.36 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=97.3
Q ss_pred CCCcEEecCCCccC-CcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEe
Q 001238 267 TELQYIYLYENALT-GSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQ 345 (1117)
Q Consensus 267 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ 345 (1117)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56788888888887 67777778888888888888888765 6778888888888888888876777777788888888
Q ss_pred cccccccCc-ccccccCCCCCcEEEecCccccCCCC---cccccccchHHHHhc
Q 001238 346 LSVNQISGE-IPAQIGNCQRLAQIELDNNQITGAIP---SEFGNLSNLTLLFVW 395 (1117)
Q Consensus 346 Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~ 395 (1117)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888753 34677888888888888888876554 356666666666654
No 387
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.5e-15 Score=154.25 Aligned_cols=132 Identities=24% Similarity=0.371 Sum_probs=104.8
Q ss_pred CEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEecccc
Q 001238 486 NFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKN 565 (1117)
Q Consensus 486 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N 565 (1117)
+.+++++|.++ .+|..+. ++|++|+|++|+|+ .+|..|..+++|+.|+|++|+|+++.+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67899999998 5665543 58999999999998 56678888888888888888888888888888888888888888
Q ss_pred ccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcc
Q 001238 566 RFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLH 645 (1117)
Q Consensus 566 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~ 645 (1117)
+|++..+..|..+++|+.|+|++|+|++ ..+..|..+++|+.|+|++|++.|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-------------------------~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-------------------------VPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB-------------------------CCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe-------------------------eChhhhhcCccccEEEeCCCCeecCCc
Confidence 8887777777777778777777777762 223346678889999999999998775
Q ss_pred h
Q 001238 646 F 646 (1117)
Q Consensus 646 ~ 646 (1117)
.
T Consensus 144 l 144 (193)
T 2wfh_A 144 M 144 (193)
T ss_dssp G
T ss_pred C
Confidence 4
No 388
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=149.06 Aligned_cols=128 Identities=23% Similarity=0.307 Sum_probs=91.9
Q ss_pred ceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCC
Q 001238 462 IRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDN 541 (1117)
Q Consensus 462 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 541 (1117)
+.+++++|.++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|.|++..+..|..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 3343332 46777777777776 55667777777777777777777766677777777777777777
Q ss_pred cCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEecccccccc
Q 001238 542 SVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSG 593 (1117)
Q Consensus 542 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 593 (1117)
+|+++.+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777777777778888888888888877666678888888888888888864
No 389
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=6e-15 Score=145.74 Aligned_cols=127 Identities=16% Similarity=0.229 Sum_probs=74.9
Q ss_pred cccceeeccccccc-CCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEE
Q 001238 411 QNLEAVDLSQNGLT-GPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLD 489 (1117)
Q Consensus 411 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 489 (1117)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666666 45565556666666666666666644 4555566666666666666655555555566666666
Q ss_pred ccCCcCCCC-CCcccccCCCCceEEccCCccccccc---hhhhccccccccccc
Q 001238 490 LGSNRLTGS-IPDEITGCRNLTFLDVHSNSIAGNLP---AGLHQLVRLQFADLS 539 (1117)
Q Consensus 490 Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls 539 (1117)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666542 23555666666666666666665444 345555555555554
No 390
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=2.4e-14 Score=145.95 Aligned_cols=132 Identities=23% Similarity=0.286 Sum_probs=85.4
Q ss_pred ceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCC
Q 001238 462 IRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDN 541 (1117)
Q Consensus 462 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 541 (1117)
+.+++++|+++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|+|++..+..|..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 444555555542 22222 245666666666666555555666666666666666666555555666666666666666
Q ss_pred cCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccccccccccc
Q 001238 542 SVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIP 596 (1117)
Q Consensus 542 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 596 (1117)
+|+++++..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666666667777777777777777776666667777888888888888775543
No 391
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=5.6e-14 Score=143.16 Aligned_cols=111 Identities=24% Similarity=0.271 Sum_probs=63.9
Q ss_pred ccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhccccccccccc
Q 001238 460 SLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLS 539 (1117)
Q Consensus 460 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 539 (1117)
+|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444444444444555555555555555554444445555555555555555555555555555666666666
Q ss_pred CCcCCCCCCCCcCCCccccEEeccccccCCC
Q 001238 540 DNSVGGMLSPDLGSLSSLTKLVLNKNRFAGS 570 (1117)
Q Consensus 540 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 570 (1117)
+|+|+++++..|..+++|+.|+|++|++.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 6666666666666677777777777777654
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.6e-15 Score=157.84 Aligned_cols=152 Identities=25% Similarity=0.268 Sum_probs=87.5
Q ss_pred CCCCCCEEEccCCcCCCCCCc------ccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCC
Q 001238 481 NLKNLNFLDLGSNRLTGSIPD------EITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSL 554 (1117)
Q Consensus 481 ~l~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 554 (1117)
....++.++++.|.+++..|. .+..+++|++|+|++|.|++ +| .+..++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~----------------------- 70 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME----------------------- 70 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-----------------------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-----------------------
Confidence 344555566666666555544 55555555555555555554 33 444444
Q ss_pred ccccEEeccccccCCCCCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCcc-ccccCCCCccEE
Q 001238 555 SSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELP-AELTGLNKLGIL 633 (1117)
Q Consensus 555 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 633 (1117)
+|+.|++++|.|+ .+|..+..+++|+.|+|++|++++ +| .+..++++ +.|+|++|++++..+ ..+..+++|+.|
T Consensus 71 -~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L-~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 71 -NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL-RVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp -TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS-SEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred -CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC-CEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 4444555555544 334444445555556666655553 33 34444444 455555555553222 467778888888
Q ss_pred eccCccccCCcch-----------hhhcccceEEEeeccccc
Q 001238 634 DLSHNELSGDLHF-----------LAELQNLVVLNVSHNNFS 664 (1117)
Q Consensus 634 dLs~N~l~~~~~~-----------l~~l~~L~~L~ls~N~l~ 664 (1117)
++++|++++.++. +..+++|+.|| +|.++
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888776543 67788888876 66665
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=8.4e-14 Score=141.70 Aligned_cols=132 Identities=15% Similarity=0.172 Sum_probs=76.3
Q ss_pred CCcccccceeecccccccCCCcccccCCC-CCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCC
Q 001238 407 ISNCQNLEAVDLSQNGLTGPIPRGIFQLK-KLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNL 485 (1117)
Q Consensus 407 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 485 (1117)
+.++.+|+.|++++|+++. +|. +..+. +|++|++++|+|++. ..|..+++|++|++++|+|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4455666677777776663 343 33333 666666666666654 456666666666666666665444444666666
Q ss_pred CEEEccCCcCCCCCCc--ccccCCCCceEEccCCccccccch---hhhcccccccccccCCcC
Q 001238 486 NFLDLGSNRLTGSIPD--EITGCRNLTFLDVHSNSIAGNLPA---GLHQLVRLQFADLSDNSV 543 (1117)
Q Consensus 486 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~i 543 (1117)
++|+|++|+|+ .+|. .+..+++|+.|++++|.+....+. .+..+++|+.||+++|.+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666665 3343 566666666666666666533221 255555555555555544
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=6.1e-14 Score=142.75 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=93.5
Q ss_pred CCCCCCCCcEEecCCCccCCcCCccCCCCC-CCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCC
Q 001238 262 ELGDCTELQYIYLYENALTGSIPSKLGNLK-NLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTS 340 (1117)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~ 340 (1117)
.+.++++|++|++++|+++ .+|. +..+. +|++|++++|++++. ..|..+++|++|+|++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3456677888888888887 3454 44444 888888888888865 57788888888888888888654455577888
Q ss_pred cceEecccccccCcccc--cccCCCCCcEEEecCccccCCCCcc----cccccchHHHHhcccccc
Q 001238 341 LQELQLSVNQISGEIPA--QIGNCQRLAQIELDNNQITGAIPSE----FGNLSNLTLLFVWHNRLE 400 (1117)
Q Consensus 341 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 400 (1117)
|++|+|++|.|+ .+|. .+..+++|+.|++++|.++. +|.. +..+++|+.|++++|.+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888886 4554 67778888888888888773 3442 555555555555555543
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.4e-15 Score=158.28 Aligned_cols=150 Identities=23% Similarity=0.327 Sum_probs=83.1
Q ss_pred CCCeeeccCccCCCCCCC------CcccccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCcccccCCCC
Q 001238 436 KLNKLLLLSNNLSGVIPP------EMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPDEITGCRNL 509 (1117)
Q Consensus 436 ~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 509 (1117)
.++.++++.|.+.+..|. .|..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344444444444444333 45555555555555555554 33 5555566666666666665 445555555666
Q ss_pred ceEEccCCccccccchhhhcccccccccccCCcCCCCCC-CCcCCCccccEEeccccccCCCCCc----------ccccc
Q 001238 510 TFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLS-PDLGSLSSLTKLVLNKNRFAGSIPS----------QLGSC 578 (1117)
Q Consensus 510 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l 578 (1117)
++|+|++|+|++ +| .+..+++|+.|++++|+|++++. ..+..+++|+.|++++|.+.+..|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 666666666664 23 45566666666666666655433 3455566666666666666544333 25566
Q ss_pred cceeEEeccccccc
Q 001238 579 VKLQLLDLSSNQLS 592 (1117)
Q Consensus 579 ~~L~~L~Ls~N~l~ 592 (1117)
++|+.|| +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 6666665 55554
No 396
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=5.1e-12 Score=146.40 Aligned_cols=313 Identities=14% Similarity=0.192 Sum_probs=135.7
Q ss_pred CCCCC-CCcEEecCCCccCCcCCccCCCCCCCcEEEccCCc---CcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCC
Q 001238 263 LGDCT-ELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNN---LVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNL 338 (1117)
Q Consensus 263 l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 338 (1117)
|.++. .|+.+.+.++ ++..-...|.++++|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ ++......|..+
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence 44442 3555555432 332333445555555555554442 33333344555555555544433 222333445555
Q ss_pred CCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeec
Q 001238 339 TSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDL 418 (1117)
Q Consensus 339 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 418 (1117)
.+|+.+.+..+. ..+....|..+.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-.. .....|..+..++....
T Consensus 137 ~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 137 EELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEE
T ss_pred ccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecc
Confidence 555555554332 2233445555555555555443 22233333432 34444444333222 33445555556655555
Q ss_pred ccccccCCCcccccC--------------CCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCC
Q 001238 419 SQNGLTGPIPRGIFQ--------------LKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKN 484 (1117)
Q Consensus 419 s~N~l~~~~p~~~~~--------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 484 (1117)
..+... .+...+.. ...+..+.+. +.+..+...+|.++..|+.+.+.++..+ +....|.++++
T Consensus 213 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~ 289 (394)
T 4gt6_A 213 DSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPA 289 (394)
T ss_dssp CCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTT
T ss_pred cccccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccc
Confidence 444433 11111111 1122222221 2223333445555555555555443332 44445555555
Q ss_pred CCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccc
Q 001238 485 LNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNK 564 (1117)
Q Consensus 485 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~ 564 (1117)
|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 5555554 3344344445555555555555433 44344445555555555555332 4455555555555555555555
Q ss_pred cccCCCCCcccccccceeEEeccccc
Q 001238 565 NRFAGSIPSQLGSCVKLQLLDLSSNQ 590 (1117)
Q Consensus 565 N~l~~~~~~~~~~l~~L~~L~Ls~N~ 590 (1117)
|... ..+|..+..|+.+.+..|.
T Consensus 367 ~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 367 SRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CHHH---HHTCBCCCCC---------
T ss_pred ceee---hhhhhccCCCCEEEeCCCC
Confidence 4332 1233344445555444443
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=2.5e-12 Score=129.77 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=93.0
Q ss_pred ccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEcc
Q 001238 412 NLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLG 491 (1117)
Q Consensus 412 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 491 (1117)
..+.+++++|.++ .+|..+. ++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578899999988 4776663 788899999999998888889999999999999999998877788899999999999
Q ss_pred CCcCCCCCCcccccCCCCceEEccCCcccccc
Q 001238 492 SNRLTGSIPDEITGCRNLTFLDVHSNSIAGNL 523 (1117)
Q Consensus 492 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 523 (1117)
+|+|++..+..|..+++|++|+|++|.+....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999777778889999999999999887643
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=2.9e-12 Score=129.25 Aligned_cols=107 Identities=25% Similarity=0.298 Sum_probs=91.0
Q ss_pred CcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEeccc
Q 001238 269 LQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSV 348 (1117)
Q Consensus 269 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~ 348 (1117)
.+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 568889999888 5776664 7889999999999988888899999999999999999977777788899999999999
Q ss_pred ccccCcccccccCCCCCcEEEecCccccCC
Q 001238 349 NQISGEIPAQIGNCQRLAQIELDNNQITGA 378 (1117)
Q Consensus 349 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 378 (1117)
|+|++..+..|.++++|++|+|++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999877777788899999999999988743
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=3.5e-12 Score=129.18 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=89.3
Q ss_pred cEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCcceEecccc
Q 001238 270 QYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSLQELQLSVN 349 (1117)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N 349 (1117)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888887 6777665 78899999999999888888999999999999999999766666788999999999999
Q ss_pred cccCcccccccCCCCCcEEEecCccccC
Q 001238 350 QISGEIPAQIGNCQRLAQIELDNNQITG 377 (1117)
Q Consensus 350 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 377 (1117)
+|++..+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9987666678889999999999998873
No 400
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=5e-12 Score=128.02 Aligned_cols=107 Identities=24% Similarity=0.292 Sum_probs=89.7
Q ss_pred cceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccC
Q 001238 413 LEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGS 492 (1117)
Q Consensus 413 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 492 (1117)
-+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888887 5777664 7888899999999888888888888999999999998877777788889999999999
Q ss_pred CcCCCCCCcccccCCCCceEEccCCccccc
Q 001238 493 NRLTGSIPDEITGCRNLTFLDVHSNSIAGN 522 (1117)
Q Consensus 493 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 522 (1117)
|+|++..+..|..+++|++|+|++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999876666788889999999999988854
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=3.9e-11 Score=138.95 Aligned_cols=303 Identities=11% Similarity=0.126 Sum_probs=219.6
Q ss_pred cCCcCCccCCCCC-CCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCc---CCCCCccccCCCCCcceEecccccccCc
Q 001238 279 LTGSIPSKLGNLK-NLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNS---LTGSIPQTLGNLTSLQELQLSVNQISGE 354 (1117)
Q Consensus 279 l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~---l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 354 (1117)
.+..-...|.+.+ .|+.+.+..+ ++.+-..+|.++++|+.+.++.|. ++..-...|.++.+|+.+.+..+ ++..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3333345677774 5999999765 776777899999999999998774 65445667888999999888765 4446
Q ss_pred ccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccccccCCCcccccCC
Q 001238 355 IPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQL 434 (1117)
Q Consensus 355 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 434 (1117)
....|..+.+|+.+.+..+. ..+....|..+.+|+.+.+..+ ++......|.+ ..|+.+.+..+... .....|...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhc
Confidence 66788999999999997654 3355667888888888888665 44344555654 57888888766443 455667777
Q ss_pred CCCCeeeccCccCCCCCCCCcc-------------cccccceeccCCCcccccCCCCcCCCCCCCEEEccCCcCCCCCCc
Q 001238 435 KKLNKLLLLSNNLSGVIPPEMG-------------NCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNRLTGSIPD 501 (1117)
Q Consensus 435 ~~L~~L~L~~N~l~~~~~~~~~-------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 501 (1117)
..++......+.........+. ....+..+.+. +.++......|.++..|+.+.+..+..+ +...
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~ 282 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTG 282 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecCc
Confidence 8888877766655422111111 11223333332 3344455667888999999999776554 6677
Q ss_pred ccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccce
Q 001238 502 EITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKL 581 (1117)
Q Consensus 502 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 581 (1117)
+|.++++|+.+.+. +.+..+....|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+|.+|
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 88899999999996 5566677778999999999999765 88888899999999999999755 776778889999999
Q ss_pred eEEeccccccc
Q 001238 582 QLLDLSSNQLS 592 (1117)
Q Consensus 582 ~~L~Ls~N~l~ 592 (1117)
+.+++.+|...
T Consensus 360 ~~i~~~~~~~~ 370 (394)
T 4gt6_A 360 NNIEYSGSRSQ 370 (394)
T ss_dssp CEEEESSCHHH
T ss_pred CEEEECCceee
Confidence 99998887643
No 402
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.26 E-value=1.2e-11 Score=134.66 Aligned_cols=147 Identities=15% Similarity=0.039 Sum_probs=115.8
Q ss_pred HHhccCCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccC-CCCcceEEeeeecCCceEEE
Q 001238 772 GDATRSLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 772 ~~~~~~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~lv 850 (1117)
......|++...++.|+++.||++... ++.+++|+...........+.+|+++++.+. |..++++++++.+.+..|+|
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 344456888888898999999999864 6899999987532233457999999999994 67788999999988899999
Q ss_pred EEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc------------------------------------
Q 001238 851 YDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHD------------------------------------ 894 (1117)
Q Consensus 851 ~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~------------------------------------ 894 (1117)
|||++|.++.+.+.. ......++.+++++++.||+.
T Consensus 89 ~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (263)
T 3tm0_A 89 MSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE 160 (263)
T ss_dssp EECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGST
T ss_pred EEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccc
Confidence 999999999876421 122346888999999999981
Q ss_pred --------------------CCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 895 --------------------CVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 895 --------------------~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
..+.++|+|++|.||+++++..+.|+||+.+..
T Consensus 161 ~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp TCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred cccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 013699999999999998765667999988753
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=3.3e-13 Score=154.23 Aligned_cols=161 Identities=21% Similarity=0.200 Sum_probs=77.3
Q ss_pred CCCCEEEccCCcCCCCCCcccccC-----CCCceEEccCCccccccchhh-hcccccccccccCCcCCCCCCCCc-----
Q 001238 483 KNLNFLDLGSNRLTGSIPDEITGC-----RNLTFLDVHSNSIAGNLPAGL-HQLVRLQFADLSDNSVGGMLSPDL----- 551 (1117)
Q Consensus 483 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~----- 551 (1117)
+.|+.|+|++|.|+......+... ++|++|+|++|.|+......+ ..+.+|+.|+|++|.|++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555553322222221 456666666665543322222 223455555555555544332222
Q ss_pred CCCccccEEeccccccCCC----CCcccccccceeEEeccccccccccccccCCchhHHHhhcCCCCcccCCccccccCC
Q 001238 552 GSLSSLTKLVLNKNRFAGS----IPSQLGSCVKLQLLDLSSNQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGL 627 (1117)
Q Consensus 552 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l 627 (1117)
...++|++|+|++|.|+.. ++..+..+++|++|||++|.|++.-.. .++..+...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~---------------------~L~~~L~~~ 210 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE---------------------LLAAQLDRN 210 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH---------------------HHHHHGGGC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH---------------------HHHHHHhcC
Confidence 1235566666666666532 223334566677777777766532100 122334444
Q ss_pred CCccEEeccCccccCCc-----chhhhcccceEEEeeccccc
Q 001238 628 NKLGILDLSHNELSGDL-----HFLAELQNLVVLNVSHNNFS 664 (1117)
Q Consensus 628 ~~L~~LdLs~N~l~~~~-----~~l~~l~~L~~L~ls~N~l~ 664 (1117)
++|+.|||++|.|+... ..+...++|++|||++|.++
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55555666666554321 11334455666666666554
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=1.7e-11 Score=139.54 Aligned_cols=131 Identities=21% Similarity=0.165 Sum_probs=75.0
Q ss_pred eEEccCC-ccccccchhhhcccccccccccC-CcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccc
Q 001238 511 FLDVHSN-SIAGNLPAGLHQLVRLQFADLSD-NSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSS 588 (1117)
Q Consensus 511 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 588 (1117)
.++++++ .|+. +|. +..+.+|+.|+|++ |+|+++.+..|.++++|+.|+|++|+|++..|..|..+++|+.|||++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3456665 5653 444 55555555555553 555555555555555555555555555555555555555555555555
Q ss_pred cccccccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch--hhhcccceEEEeecccccCC
Q 001238 589 NQLSGNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF--LAELQNLVVLNVSHNNFSGR 666 (1117)
Q Consensus 589 N~l~~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~--l~~l~~L~~L~ls~N~l~~~ 666 (1117)
|+|+ +..+..|..++ |+.|+|++|+|.+++.. +..+.......+..+++++.
T Consensus 90 N~l~-------------------------~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~ 143 (347)
T 2ifg_A 90 NALE-------------------------SLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 143 (347)
T ss_dssp SCCS-------------------------CCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCS
T ss_pred Cccc-------------------------eeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCC
Confidence 5554 33344444444 89999999999987653 44444344444556667666
Q ss_pred CCC
Q 001238 667 VPD 669 (1117)
Q Consensus 667 ~p~ 669 (1117)
-|.
T Consensus 144 ~~~ 146 (347)
T 2ifg_A 144 GQG 146 (347)
T ss_dssp SSS
T ss_pred CCh
Confidence 554
No 405
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=3.1e-13 Score=154.39 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=88.5
Q ss_pred ccccceeecccccccCCCcccccCC-----CCCCeeeccCccCCCCCCCCc-ccccccceeccCCCcccccCCCCc----
Q 001238 410 CQNLEAVDLSQNGLTGPIPRGIFQL-----KKLNKLLLLSNNLSGVIPPEM-GNCSSLIRFRANSNKLTGFIPPEI---- 479 (1117)
Q Consensus 410 l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~---- 479 (1117)
++.|+.|+|++|.++......+... .+|++|+|++|.|+......+ ..+++|++|+|++|+|++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567888888888875333333322 577778888877764332222 234567777777777764433333
Q ss_pred -CCCCCCCEEEccCCcCCCC----CCcccccCCCCceEEccCCcccccc----chhhhcccccccccccCCcCCCCCCCC
Q 001238 480 -GNLKNLNFLDLGSNRLTGS----IPDEITGCRNLTFLDVHSNSIAGNL----PAGLHQLVRLQFADLSDNSVGGMLSPD 550 (1117)
Q Consensus 480 -~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 550 (1117)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.. +..+...+.|+.|+|++|.|++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2346677777777776532 2333455667777777777766432 334444555555555555554432211
Q ss_pred ----cCCCccccEEeccccccC
Q 001238 551 ----LGSLSSLTKLVLNKNRFA 568 (1117)
Q Consensus 551 ----~~~l~~L~~L~L~~N~l~ 568 (1117)
+...++|+.|+|++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 112344555555555444
No 406
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.3e-10 Score=132.05 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=86.8
Q ss_pred ceeecccc-cccCCCcccccCCCCCCeeeccC-ccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEcc
Q 001238 414 EAVDLSQN-GLTGPIPRGIFQLKKLNKLLLLS-NNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLG 491 (1117)
Q Consensus 414 ~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls 491 (1117)
..++++++ .|+ .+|. +..+.+|++|+|++ |+|+++.+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35678887 787 4777 88888888888885 88888877888888888888888888888888888888889999999
Q ss_pred CCcCCCCCCcccccCCCCceEEccCCccccc
Q 001238 492 SNRLTGSIPDEITGCRNLTFLDVHSNSIAGN 522 (1117)
Q Consensus 492 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 522 (1117)
+|+|++..+..|..++ |+.|+|++|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9998876666676666 88999999888753
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.11 E-value=1.5e-10 Score=125.65 Aligned_cols=137 Identities=16% Similarity=0.101 Sum_probs=102.5
Q ss_pred CCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCC--cceEEeeeecCCceEEEEEec
Q 001238 777 SLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRN--IVRLLGWGANRKTKLLFYDYM 854 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~~~~~~~~~~~lv~e~~ 854 (1117)
.+.+....+.|..+.||++...+|+.+++|+.... ....+.+|+++++.+.+.+ ++++++++...+..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence 34433333355569999998777888999997643 2356889999999996544 567898888888889999999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC---------------------------------------
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDC--------------------------------------- 895 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~--------------------------------------- 895 (1117)
+|.++. ... .+ ...++.++++.++.||+..
T Consensus 98 ~G~~l~--~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (264)
T 1nd4_A 98 PGQDLL--SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLA 166 (264)
T ss_dssp SSEETT--TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCC
T ss_pred CCcccC--cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCcc
Confidence 998884 221 11 2356778888888888742
Q ss_pred ----------------CCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 896 ----------------VPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 896 ----------------~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
.+.++|+|++|.||++++++.+.|+|||.+..
T Consensus 167 ~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 167 PAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 12399999999999998876677999998764
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.11 E-value=3.3e-09 Score=122.09 Aligned_cols=314 Identities=12% Similarity=0.081 Sum_probs=157.2
Q ss_pred cccccccceeecccccccccCCcCCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCC
Q 001238 239 LGLLKRLQTIAIYTALLSGQIPPELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLS 318 (1117)
Q Consensus 239 l~~l~~L~~L~l~~~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 318 (1117)
+....+|+.+.+... +...-..+|.+|++|+.+.|..+ ++..-...|.++ +|+.+.+..+ +..+-...|... +|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 333444555544322 22233456778888888888644 553444566665 5777776544 443444556554 688
Q ss_pred EEEcCCCcCCCCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhcccc
Q 001238 319 IIDISMNSLTGSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNR 398 (1117)
Q Consensus 319 ~LdLs~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 398 (1117)
.+++..+-.. .....|.+ .+|+.+.+..+ ++......|..+..++.+.+..+.........+ . .+.
T Consensus 117 ~i~lp~~~~~-i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~----------~~~ 182 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-L----------YNK 182 (379)
T ss_dssp EEECCTTCCE-ECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-E----------EET
T ss_pred cccCCCcccc-cccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccce-e----------ccc
Confidence 8887654322 33334444 35666655543 333445567777777777766554331111000 0 000
Q ss_pred ccccCCCCCCcccccceeecccccccCCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCC
Q 001238 399 LEGEIPPSISNCQNLEAVDLSQNGLTGPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPE 478 (1117)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 478 (1117)
.. .....+..+..+..+.+..+.-. .....+.....|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+....
T Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 183 NK-TILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp TS-SEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred cc-ceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 00 01111222333333333322211 22333444455555555433 33344445555555555555443 44344455
Q ss_pred cCCCCCCCEEEccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCcccc
Q 001238 479 IGNLKNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLT 558 (1117)
Q Consensus 479 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 558 (1117)
|.++.+|+.+.+..+ ++.+...+|.++++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.|...+|.++.+|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 555556666655433 43344445556666666666655555555555666666666665433 5555666666666666
Q ss_pred EEeccccccCCCCCcccccc
Q 001238 559 KLVLNKNRFAGSIPSQLGSC 578 (1117)
Q Consensus 559 ~L~L~~N~l~~~~~~~~~~l 578 (1117)
.+.+..+ ++.+...+|.++
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTS
T ss_pred EEEECCc-cCEEchhHhhCC
Confidence 6666443 443444555554
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=1.2e-09 Score=125.78 Aligned_cols=293 Identities=12% Similarity=0.077 Sum_probs=190.4
Q ss_pred CCCCCCCCcEEecCCCccCCcCCccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccCCCCCc
Q 001238 262 ELGDCTELQYIYLYENALTGSIPSKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLGNLTSL 341 (1117)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L 341 (1117)
++....+|+.+.+.. .++..-...|.++.+|+.+.|..+ ++.+-..+|.++ +|+.+.+..+ ++......|.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 344556677776653 344333456777777777777543 554555566665 4666655433 33233333443 356
Q ss_pred ceEecccccccCcccccccCCCCCcEEEecCccccCCCCcccccccchHHHHhccccccccCCCCCCcccccceeecccc
Q 001238 342 QELQLSVNQISGEIPAQIGNCQRLAQIELDNNQITGAIPSEFGNLSNLTLLFVWHNRLEGEIPPSISNCQNLEAVDLSQN 421 (1117)
Q Consensus 342 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 421 (1117)
+.+.+..+-.. .....|.+. +|+.+.+..+ ++.+... .|..+.+++.+.+..+
T Consensus 116 ~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~------------------------~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 116 DDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDG------------------------IGYKAENLEKIEVSSN 168 (379)
T ss_dssp SEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSC------------------------TTTTCTTCCEEEECTT
T ss_pred ccccCCCcccc-ccccccccc-eeeeeeccce-eeccccc------------------------hhcccccccccccccc
Confidence 66666544221 223333332 3444443322 2212223 3344444444443332
Q ss_pred ccc------------CCCcccccCCCCCCeeeccCccCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEE
Q 001238 422 GLT------------GPIPRGIFQLKKLNKLLLLSNNLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLD 489 (1117)
Q Consensus 422 ~l~------------~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 489 (1117)
... ......+.....+..+.+..+. .......+..+..|+.+.+..+ ++......|.++..|+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~ 246 (379)
T 4h09_A 169 NKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA 246 (379)
T ss_dssp CSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred cceeecccceecccccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence 211 1122334445566666655433 3355667888899999998765 4546677899999999999
Q ss_pred ccCCcCCCCCCcccccCCCCceEEccCCccccccchhhhcccccccccccCCcCCCCCCCCcCCCccccEEeccccccCC
Q 001238 490 LGSNRLTGSIPDEITGCRNLTFLDVHSNSIAGNLPAGLHQLVRLQFADLSDNSVGGMLSPDLGSLSSLTKLVLNKNRFAG 569 (1117)
Q Consensus 490 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 569 (1117)
+..+ ++.+...+|.++.+|+.+.+..+ +..+....|..+.+|+.+++.++.++.+...+|.++.+|+.+.|..+ ++.
T Consensus 247 lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~ 323 (379)
T 4h09_A 247 IPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT 323 (379)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE
T ss_pred cCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE
Confidence 9876 66677788999999999999755 66677778999999999999999999999999999999999999765 776
Q ss_pred CCCcccccccceeEEeccccccc
Q 001238 570 SIPSQLGSCVKLQLLDLSSNQLS 592 (1117)
Q Consensus 570 ~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1117)
+...+|.+|.+|+.+.+..+ ++
T Consensus 324 I~~~aF~~C~~L~~i~ip~~-v~ 345 (379)
T 4h09_A 324 IQVYAFKNCKALSTISYPKS-IT 345 (379)
T ss_dssp ECTTTTTTCTTCCCCCCCTT-CC
T ss_pred EHHHHhhCCCCCCEEEECCc-cC
Confidence 77889999999999999765 55
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.98 E-value=1.3e-09 Score=124.49 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=106.8
Q ss_pred CCeeeecCCeEEEEEEcCCCcEEEEEEee--cCC-ccchHHHHHHHHHHhccC--CCCcceEEeeeecC---CceEEEEE
Q 001238 781 GNIIGQGRSGIVYKVTLPSGLTVAVKRFR--ASD-KISTGAFSSEIATLSRIR--HRNIVRLLGWGANR---KTKLLFYD 852 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--H~niv~l~~~~~~~---~~~~lv~e 852 (1117)
.+.++.|.++.||++...+ ..+++|+.. ... ......+.+|+++++.+. +..+++++.++.+. +..|+|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 4678999999999998754 578888775 322 123457889999999997 45678999988776 45899999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC-------------------------------------
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDC------------------------------------- 895 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------- 895 (1117)
|++|..+.+... ..++..++..++.+++++|+.||+..
T Consensus 122 ~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (359)
T 3dxp_A 122 FVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA 196 (359)
T ss_dssp CCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred ecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence 999988754221 12678888899999999999999731
Q ss_pred ------------------CCceeeeccccCeEEEcCCCc--ceecccccccc
Q 001238 896 ------------------VPAILHRDVKSHNILLGERYE--SCLADFGLARL 927 (1117)
Q Consensus 896 ------------------~~~ivHrDlkp~Nill~~~~~--~kl~DfGla~~ 927 (1117)
.+.++|||++|.||++++++. +.|+||+.+..
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247999999999999997753 58999998864
No 411
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.92 E-value=9.4e-10 Score=122.37 Aligned_cols=189 Identities=21% Similarity=0.216 Sum_probs=125.2
Q ss_pred CCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccC-CCC--cceEEeeeecCC---ceEEEEEec
Q 001238 781 GNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRN--IVRLLGWGANRK---TKLLFYDYM 854 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~n--iv~l~~~~~~~~---~~~lv~e~~ 854 (1117)
.+.++.|.+..||++. ..+++|+.... .....+.+|+++++.+. +.. +++++..+...+ ..|+||||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4569999999999864 46889986532 23567899999998883 333 456666554433 348899999
Q ss_pred CCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc----------------------------------------
Q 001238 855 PNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHD---------------------------------------- 894 (1117)
Q Consensus 855 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~---------------------------------------- 894 (1117)
+|.++.+.... .++.+++..++.++++.++.||+.
T Consensus 99 ~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (304)
T 3sg8_A 99 KGVPLTPLLLN-----NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKV 173 (304)
T ss_dssp CCEECCHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred CCeECCccccc-----cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHH
Confidence 99888653322 267778888999999999999861
Q ss_pred ---------------CCCceeeeccccCeEEEcC--CCcceeccccccccccCCCCCccccC----------Cccccccc
Q 001238 895 ---------------CVPAILHRDVKSHNILLGE--RYESCLADFGLARLVEDDSGGSFSAN----------PQFAGSYG 947 (1117)
Q Consensus 895 ---------------~~~~ivHrDlkp~Nill~~--~~~~kl~DfGla~~~~~~~~~~~~~~----------~~~~gt~~ 947 (1117)
..+.++|+|++|.||++++ ...+.++||+.+........-..... ..+....+
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~ 253 (304)
T 3sg8_A 174 DDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYK 253 (304)
T ss_dssp HHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcC
Confidence 1246899999999999998 45678999999875322100000000 00001111
Q ss_pred cCC-hhhhccCCCCcCCCeeehhhhHHHHHhCCCCC
Q 001238 948 YIA-PEYANMTKISEKSDVYSYGVVLLEIITGKKPV 982 (1117)
Q Consensus 948 y~a-PE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~ 982 (1117)
+.. |+.... .....+.|+++.++|++.+|+.+|
T Consensus 254 ~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 254 HKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp CSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 222 332211 122358999999999999999876
No 412
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.82 E-value=1.9e-10 Score=123.18 Aligned_cols=67 Identities=25% Similarity=0.389 Sum_probs=37.1
Q ss_pred cccccCcEeeccCCCcCC--CCchhhhhhhhhhhhhccCCCcCCCCchhccCCc--CCcEEeccCCCCCCCCc
Q 001238 119 ASLNQLNYLDLSENSLTG--EIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLS--SLTQLFLYDNQLTDAIP 187 (1117)
Q Consensus 119 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~--~L~~L~L~~N~l~~~~p 187 (1117)
.++++|++|+||+|+|++ .+|..+..+++|++|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345566666666666654 3445555666666666666666533 2233333 56666666666654443
No 413
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=2e-09 Score=121.74 Aligned_cols=89 Identities=18% Similarity=0.175 Sum_probs=48.3
Q ss_pred ccCCCCCCCcEEEccCCcCcccCCcCCCCCCCCCEEEcCCCcCCCCCccccC--CCCCcceEeccc--ccccCc-----c
Q 001238 285 SKLGNLKNLVNLFLWQNNLVGIIPPELGNCSQLSIIDISMNSLTGSIPQTLG--NLTSLQELQLSV--NQISGE-----I 355 (1117)
Q Consensus 285 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~~~-----~ 355 (1117)
..+..+++|+.|+|++|.-. .++. +. +++|++|+|..|.+.......++ .+++|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34456677777777766311 1222 33 67777777777776543333333 567777777753 221111 0
Q ss_pred cccc--cCCCCCcEEEecCcccc
Q 001238 356 PAQI--GNCQRLAQIELDNNQIT 376 (1117)
Q Consensus 356 p~~~--~~l~~L~~L~L~~N~l~ 376 (1117)
...+ ..+++|+.|+|.+|.+.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCc
Confidence 1112 23567777777776665
No 414
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2.3e-09 Score=121.19 Aligned_cols=187 Identities=17% Similarity=0.144 Sum_probs=97.0
Q ss_pred hhhcccccCcEeeccCCCcC---------CCCchhhhhhhhhhhhhccCCCcCCCCchhccCCcCCcEEeccCCCCCCCC
Q 001238 116 KEIASLNQLNYLDLSENSLT---------GEIPRELCSLLRLEQLRLNSNQLEGAIPIQIGNLSSLTQLFLYDNQLTDAI 186 (1117)
Q Consensus 116 ~~~~~l~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~L~~L~~L~L~~N~l~~~~ 186 (1117)
.++.++++|+.|.+..+... +.++..+..+++|+.|+|++|.-. .+|. +. +++|++|+|..|.++...
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH
Confidence 34455666666666544321 123344445556666666655211 2222 22 566666666666654332
Q ss_pred ccccc--CcccchhhhccCCCCC-CCCCCccccccccccccccccccccccCCccc--ccccccceeecccccccccCCc
Q 001238 187 PATIG--KLKNLEAIRAGGNKNL-GGSLPHEIGNCTNLVMIGLAETSISGFLPPTL--GLLKRLQTIAIYTALLSGQIPP 261 (1117)
Q Consensus 187 p~~~~--~l~~L~~L~l~~n~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~lp~~l--~~l~~L~~L~l~~~~l~~~~p~ 261 (1117)
...++ .+++|+.|+|+.+.+. .+.. .+ ..+ .+.+ ..+++|+.|++.+|.+....+.
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~---~~l--------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~ 270 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDG--DM---NVF--------------RPLFSKDRFPNLKWLGIVDAEEQNVVVE 270 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCS--CG---GGT--------------GGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred HHHHHHccCCCCcEEEEeccccccccch--hH---HHH--------------HHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence 22332 4556666655422110 0000 00 000 0011 2345666666666655432211
Q ss_pred CC---CCCCCCcEEecCCCccCCc----CCccCCCCCCCcEEEccCCcCcccCCcCCCC-CCCCCEEEcCCCc
Q 001238 262 EL---GDCTELQYIYLYENALTGS----IPSKLGNLKNLVNLFLWQNNLVGIIPPELGN-CSQLSIIDISMNS 326 (1117)
Q Consensus 262 ~l---~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~LdLs~N~ 326 (1117)
.+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+.. + ...+|++.++
T Consensus 271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 11 2467899999999988763 3444456789999999999887543333332 2 3668888887
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.58 E-value=2e-07 Score=104.20 Aligned_cols=137 Identities=14% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCC----CCcceEEeeeecCCceEEEEE
Q 001238 777 SLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRH----RNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H----~niv~l~~~~~~~~~~~lv~e 852 (1117)
.+...+.++.|....||++ |+.+++|+.... .....+.+|+++++.+.+ ..+++++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5566788999999999998 667888976432 224568999999998866 234566655 56789999
Q ss_pred ecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCC------------------------------------
Q 001238 853 YMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCV------------------------------------ 896 (1117)
Q Consensus 853 ~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~------------------------------------ 896 (1117)
|++|.++...... .++..++..++.++++.++.||+...
T Consensus 108 ~i~G~~l~~~~~~-----~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (320)
T 3r70_A 108 YIKGERITYEQYH-----KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLT 182 (320)
T ss_dssp CCCCBCCCHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ecCCccccccccc-----cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccc
Confidence 9999988643321 15677777888888888888885422
Q ss_pred ------------------------CceeeeccccCeEEEcCCCcceeccccccccc
Q 001238 897 ------------------------PAILHRDVKSHNILLGERYESCLADFGLARLV 928 (1117)
Q Consensus 897 ------------------------~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~ 928 (1117)
+.++|+|++|.||+++++..+.++||+.+...
T Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 183 DEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred ccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 34599999999999999766789999998653
No 416
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.55 E-value=3.7e-07 Score=99.94 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=62.1
Q ss_pred CCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCC---CcceEEeeeecCCceEEEEEecCC
Q 001238 780 AGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHR---NIVRLLGWGANRKTKLLFYDYMPN 856 (1117)
Q Consensus 780 ~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~l~~~~~~~~~~~lv~e~~~~ 856 (1117)
..+.|+.|.++.||++...+|+.++||+...........|.+|++.++.+++. .+++++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 35679999999999999888999999997544333456799999999999765 578888764 36999999999
Q ss_pred CCh
Q 001238 857 GTL 859 (1117)
Q Consensus 857 gsL 859 (1117)
+.+
T Consensus 95 ~~~ 97 (288)
T 3d1u_A 95 RPP 97 (288)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 417
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.40 E-value=1.2e-06 Score=96.95 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=97.3
Q ss_pred CCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCC---CcceEEeeee-cCCceEEEEEecCC
Q 001238 781 GNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHR---NIVRLLGWGA-NRKTKLLFYDYMPN 856 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~---niv~l~~~~~-~~~~~~lv~e~~~~ 856 (1117)
.+.++.|....||++ |..+++|+... ......+.+|+++++.+.+. .+++++.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 356888999999998 56788888532 22346789999999999652 3667777764 45567899999999
Q ss_pred CChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc------------------------------------------
Q 001238 857 GTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHD------------------------------------------ 894 (1117)
Q Consensus 857 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~------------------------------------------ 894 (1117)
..+.+..... ++..++..++.++++.|+.||+.
T Consensus 98 ~~l~~~~~~~-----l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l 172 (306)
T 3tdw_A 98 QILGEDGMAV-----LPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYL 172 (306)
T ss_dssp EECHHHHHTT-----SCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred eECchhhhhh-----CCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 8887632211 34555556666666666666642
Q ss_pred ---------------CCCceeeeccccCeEEEcC---CCcc-eecccccccc
Q 001238 895 ---------------CVPAILHRDVKSHNILLGE---RYES-CLADFGLARL 927 (1117)
Q Consensus 895 ---------------~~~~ivHrDlkp~Nill~~---~~~~-kl~DfGla~~ 927 (1117)
..+.++|+|++|.||++++ ++.+ .|+||+.+..
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 173 TLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2236799999999999997 4554 7999998864
No 418
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.35 E-value=1.5e-06 Score=94.66 Aligned_cols=136 Identities=18% Similarity=0.156 Sum_probs=100.4
Q ss_pred CeeeecCCe-EEEEEEcC-CCcEEEEEEeecCCccchHHHHHHHHHHhccC-CCCcceEEeeeecCCceEEEEEecCCCC
Q 001238 782 NIIGQGRSG-IVYKVTLP-SGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRNIVRLLGWGANRKTKLLFYDYMPNGT 858 (1117)
Q Consensus 782 ~~lg~G~fg-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~lv~e~~~~gs 858 (1117)
+.+..|..| .||+.... ++..+++|+-... ....+.+|++.++.+. +--+.++++++.+.+..++|||+++|.+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~ 106 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT 106 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence 345666666 69998754 4678899986532 3457889999998884 3347789999999999999999999988
Q ss_pred hhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC-------------------------------------------
Q 001238 859 LGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDC------------------------------------------- 895 (1117)
Q Consensus 859 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------------- 895 (1117)
+.+..... ......++.++++.|+.||+..
T Consensus 107 ~~~~~~~~-------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (272)
T 4gkh_A 107 AFQVLEEY-------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQV 179 (272)
T ss_dssp HHHHHHHC-------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHH
T ss_pred ccccccCC-------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHH
Confidence 87765432 1223456667777777777531
Q ss_pred ------------CCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 896 ------------VPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 896 ------------~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
.+.++|+|+.+.||++++++.+-|+||+.+..
T Consensus 180 ~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 180 WKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 12489999999999999877777999998864
No 419
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.24 E-value=2.9e-06 Score=96.24 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=92.2
Q ss_pred CCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCC--cceEEeeeecC-CceEEEEEec
Q 001238 778 LTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRN--IVRLLGWGANR-KTKLLFYDYM 854 (1117)
Q Consensus 778 ~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~~~~~~~-~~~~lv~e~~ 854 (1117)
....+.++.|....||++.. +|+.+++|+.... ..+.+|+++++.+.... ++++++++... +..|+||||+
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 33456789999999999876 5788999987532 35889999999986533 56778776654 6689999999
Q ss_pred CCCChhhh------------------hcCCCCC---C-----------CCCHHHH---------------------HHHH
Q 001238 855 PNGTLGML------------------LHDGECA---G-----------LLEWDTR---------------------FKIA 881 (1117)
Q Consensus 855 ~~gsL~~~------------------l~~~~~~---~-----------~l~~~~~---------------------~~i~ 881 (1117)
+|.++.+. ++..... + .-.|... ....
T Consensus 117 ~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (362)
T 3ovc_A 117 QGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVA 196 (362)
T ss_dssp CSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 98766421 0110000 0 0011111 0111
Q ss_pred HHHHHHHHHHhcc-CCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 882 LGVAEGLSYLHHD-CVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 882 ~~i~~~L~~LH~~-~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
..+....+++... ..+.++|+|++|.||++++++.+.|+||+.+..
T Consensus 197 ~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 197 QALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 1122222233211 125789999999999998777788999998865
No 420
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=1.1e-07 Score=97.02 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=60.0
Q ss_pred cCCCCCCCEEEccCC-cCCCC----CCcccccCCCCceEEccCCccccc----cchhhhcccccccccccCCcCCCCC--
Q 001238 479 IGNLKNLNFLDLGSN-RLTGS----IPDEITGCRNLTFLDVHSNSIAGN----LPAGLHQLVRLQFADLSDNSVGGML-- 547 (1117)
Q Consensus 479 ~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~-- 547 (1117)
+...+.|++|+|++| .|... +...+...++|++|+|++|.|... +...+...+.|+.|+|++|.|++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334445555555555 44321 122233345555555555555432 2223333445555555555554422
Q ss_pred --CCCcCCCccccEEec--cccccCCC----CCcccccccceeEEeccccccc
Q 001238 548 --SPDLGSLSSLTKLVL--NKNRFAGS----IPSQLGSCVKLQLLDLSSNQLS 592 (1117)
Q Consensus 548 --~~~~~~l~~L~~L~L--~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 592 (1117)
...+...++|++|+| ++|.|... +...+...++|+.|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 123344456777777 66777643 2334555678888888888875
No 421
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.22 E-value=2.4e-06 Score=97.10 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=57.6
Q ss_pred Cee-eecCCeEEEEEEcC-------CCcEEEEEEeecCC---ccchHHHHHHHHHHhccC-C--CCcceEEeeeecC---
Q 001238 782 NII-GQGRSGIVYKVTLP-------SGLTVAVKRFRASD---KISTGAFSSEIATLSRIR-H--RNIVRLLGWGANR--- 844 (1117)
Q Consensus 782 ~~l-g~G~fg~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-H--~niv~l~~~~~~~--- 844 (1117)
+.| +.|....+|++... +++.+++|+..... ......+.+|+++++.+. + -.+++++.++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 557 78888999998753 26788999865422 112356889999999884 3 3577888877655
Q ss_pred CceEEEEEecCCCChhh
Q 001238 845 KTKLLFYDYMPNGTLGM 861 (1117)
Q Consensus 845 ~~~~lv~e~~~~gsL~~ 861 (1117)
+..++||||++|..+.+
T Consensus 106 g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp SSCEEEEECCCCBCCCB
T ss_pred CCceEEEEecCCCChhh
Confidence 35689999999877654
No 422
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=7.5e-07 Score=95.29 Aligned_cols=80 Identities=29% Similarity=0.317 Sum_probs=67.7
Q ss_pred ccccCCeEeccCCCCCC--CchhhhcccccCcEeeccCCCcCCCCchhhhhhh--hhhhhhccCCCcCCCCc-------h
Q 001238 96 SLLSLNRLVLSGTNLTG--SIPKEIASLNQLNYLDLSENSLTGEIPRELCSLL--RLEQLRLNSNQLEGAIP-------I 164 (1117)
Q Consensus 96 ~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p-------~ 164 (1117)
++++|+.|+|++|+|++ .+|..+..+++|++|||++|+|++. .++..+. +|++|+|++|.+.+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 47789999999999998 5678889999999999999999854 4566666 99999999999997666 3
Q ss_pred hccCCcCCcEEec
Q 001238 165 QIGNLSSLTQLFL 177 (1117)
Q Consensus 165 ~~~~L~~L~~L~L 177 (1117)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4778899998863
No 423
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.4e-07 Score=96.11 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=40.5
Q ss_pred cccCCCCCCeeeccCc-cCCCC----CCCCcccccccceeccCCCcccccC----CCCcCCCCCCCEEEccCCcCCCC--
Q 001238 430 GIFQLKKLNKLLLLSN-NLSGV----IPPEMGNCSSLIRFRANSNKLTGFI----PPEIGNLKNLNFLDLGSNRLTGS-- 498 (1117)
Q Consensus 430 ~~~~l~~L~~L~L~~N-~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-- 498 (1117)
.+...+.|++|+|++| .|... +...+...++|++|+|++|+|.+.. ...+...++|++|+|++|.|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566777777776 66532 1122333444555555555544321 11222334445555555544421
Q ss_pred --CCcccccCCCCceEEc--cCCccc
Q 001238 499 --IPDEITGCRNLTFLDV--HSNSIA 520 (1117)
Q Consensus 499 --~p~~~~~l~~L~~L~L--s~N~l~ 520 (1117)
+...+...+.|++|+| ++|.|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 1223333444444444 444444
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.95 E-value=3e-05 Score=89.34 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=51.1
Q ss_pred CCeeeecCCeEEEEEEcC-CCcEEEEEEeecCCc-------cchHHHHHHHHHHhccCC--C-CcceEEeeeecCCceEE
Q 001238 781 GNIIGQGRSGIVYKVTLP-SGLTVAVKRFRASDK-------ISTGAFSSEIATLSRIRH--R-NIVRLLGWGANRKTKLL 849 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~H--~-niv~l~~~~~~~~~~~l 849 (1117)
.+.+|.|.++.||++... +++.|+||....... ...+++..|+++++.+.. | .+++++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999754 468899998653211 234567889999988742 3 34566654 3455689
Q ss_pred EEEecCCC
Q 001238 850 FYDYMPNG 857 (1117)
Q Consensus 850 v~e~~~~g 857 (1117)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999874
No 425
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.91 E-value=4.8e-05 Score=83.79 Aligned_cols=138 Identities=18% Similarity=0.211 Sum_probs=93.5
Q ss_pred CCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccC---CCCcceEEeeeecCCceEEEEEecCCC
Q 001238 781 GNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIR---HRNIVRLLGWGANRKTKLLFYDYMPNG 857 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~~~~~~~~~lv~e~~~~g 857 (1117)
.+.|+.|.+..+|++.. ++..+++|+.... ....+.+|++.++.+. ...++++++++...+..++||||+++.
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 46789999999999986 4678889987643 3567899999999984 356889999888888899999999987
Q ss_pred Chhh-----------hhcCCCC---CC----------------CCCHHHHH---HHHH----------------HHHHH-
Q 001238 858 TLGM-----------LLHDGEC---AG----------------LLEWDTRF---KIAL----------------GVAEG- 887 (1117)
Q Consensus 858 sL~~-----------~l~~~~~---~~----------------~l~~~~~~---~i~~----------------~i~~~- 887 (1117)
.+.. .++.... .+ .-+|.... ++.. .++..
T Consensus 117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l 196 (312)
T 3jr1_A 117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV 196 (312)
T ss_dssp CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 6421 1222111 00 01354321 1111 11111
Q ss_pred HHHHhc-cCCCceeeeccccCeEEEcCCCcceecccc
Q 001238 888 LSYLHH-DCVPAILHRDVKSHNILLGERYESCLADFG 923 (1117)
Q Consensus 888 L~~LH~-~~~~~ivHrDlkp~Nill~~~~~~kl~DfG 923 (1117)
.+.|.. ...|.+||+|+.+.|++++.++ +.|+||.
T Consensus 197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 223422 2357899999999999999887 8899973
No 426
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.87 E-value=3.7e-05 Score=86.59 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=82.0
Q ss_pred CeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCC--CCcceEEe------eeecCCceEEEEEe
Q 001238 782 NIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRH--RNIVRLLG------WGANRKTKLLFYDY 853 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~l~~------~~~~~~~~~lv~e~ 853 (1117)
+.|+.|..+.||++...+| .+++|+.... .+++..|+++++.+.. -.+++++. +....+..+++|||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 3466677899999987555 5899988752 2445566676666631 13344443 12345667899999
Q ss_pred cCCCChh--------------hhhcCC---C--CC------CCCCHHHH-------------------------------
Q 001238 854 MPNGTLG--------------MLLHDG---E--CA------GLLEWDTR------------------------------- 877 (1117)
Q Consensus 854 ~~~gsL~--------------~~l~~~---~--~~------~~l~~~~~------------------------------- 877 (1117)
++|..+. ..+|.. . .. ....|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 011110 0 00 01123211
Q ss_pred HHHHHHHHHHHHHHhc----------cCCCceeeeccccCeEEEcCCCcceeccccccc
Q 001238 878 FKIALGVAEGLSYLHH----------DCVPAILHRDVKSHNILLGERYESCLADFGLAR 926 (1117)
Q Consensus 878 ~~i~~~i~~~L~~LH~----------~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~ 926 (1117)
..+...+..++++|++ ...+.++|+|+++.||+++.++.+.++||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1111224446667763 123489999999999999888899999999775
No 427
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.86 E-value=3.3e-05 Score=84.69 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=60.1
Q ss_pred CCCCCCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCC---CCcceEEeeeecCCceEEEEEe
Q 001238 777 SLTAGNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRH---RNIVRLLGWGANRKTKLLFYDY 853 (1117)
Q Consensus 777 ~~~~~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H---~niv~l~~~~~~~~~~~lv~e~ 853 (1117)
.+..++.+|.|..+.||+++..+|+.|++|+...........|.+|++.|+.+.- --+++++++. ..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence 3445678999999999999999999999998765544445678999999998842 2355666643 34899999
Q ss_pred cCCCCh
Q 001238 854 MPNGTL 859 (1117)
Q Consensus 854 ~~~gsL 859 (1117)
++++..
T Consensus 92 l~~~~~ 97 (288)
T 3f7w_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred ecccCC
Confidence 987653
No 428
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.53 E-value=0.00024 Score=82.38 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=46.6
Q ss_pred CCeeeecCCeEEEEEEcCCCcEEEEEEeecC-----C--cc--chHHHHHHHHHHhc-cCCCCcceEEeeeecCCceEEE
Q 001238 781 GNIIGQGRSGIVYKVTLPSGLTVAVKRFRAS-----D--KI--STGAFSSEIATLSR-IRHRNIVRLLGWGANRKTKLLF 850 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~-----~--~~--~~~~~~~E~~~l~~-l~H~niv~l~~~~~~~~~~~lv 850 (1117)
.+.+|.|..+.||++.. +++.++||..... . .. ....++.|+..+.. ..+..+++++.+. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 46789999999999975 5678999943221 1 11 22334444443322 2234667777765 5677999
Q ss_pred EEec-CC
Q 001238 851 YDYM-PN 856 (1117)
Q Consensus 851 ~e~~-~~ 856 (1117)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 429
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.39 E-value=4.3e-05 Score=75.62 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=24.4
Q ss_pred CCCCEEEccCCcCCCCCCcccccCCCCceEEccCCc-ccc
Q 001238 483 KNLNFLDLGSNRLTGSIPDEITGCRNLTFLDVHSNS-IAG 521 (1117)
Q Consensus 483 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~ 521 (1117)
..|+.|||+++.|+...-..+.++++|++|+|++|. |++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 356667777666665444555666777777777764 554
No 430
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.35 E-value=0.00065 Score=75.95 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=76.0
Q ss_pred CeeeecCCeE-EEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCC--CCcceEEeeeecCCceEEEEEecCCCC
Q 001238 782 NIIGQGRSGI-VYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRH--RNIVRLLGWGANRKTKLLFYDYMPNGT 858 (1117)
Q Consensus 782 ~~lg~G~fg~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H--~niv~l~~~~~~~~~~~lv~e~~~~gs 858 (1117)
+.|+.|+... +|+....+|+.+++|...... ...+..|+++++.+.. -.+++++.+....+ +++||++.+..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 3465565554 678776446778787654321 1345678888877742 23567777643333 78999997766
Q ss_pred hhhhhcCCC---------------------C--CCCCCHHHHH-------H-H------------HHHHHHHHHHHh---
Q 001238 859 LGMLLHDGE---------------------C--AGLLEWDTRF-------K-I------------ALGVAEGLSYLH--- 892 (1117)
Q Consensus 859 L~~~l~~~~---------------------~--~~~l~~~~~~-------~-i------------~~~i~~~L~~LH--- 892 (1117)
+.+++.... . .+.++..... . + ...+...++.+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 654332110 0 0111111100 0 0 011112222221
Q ss_pred ccCCCceeeeccccCeEEEcCC----Ccceeccccccccc
Q 001238 893 HDCVPAILHRDVKSHNILLGER----YESCLADFGLARLV 928 (1117)
Q Consensus 893 ~~~~~~ivHrDlkp~Nill~~~----~~~kl~DfGla~~~ 928 (1117)
....+.++|||+.+.||+++.+ +.+.++||+.+..-
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 1123489999999999999874 67899999988753
No 431
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.27 E-value=6.7e-05 Score=74.25 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=38.2
Q ss_pred ccceeccCCCcccccCCCCcCCCCCCCEEEccCCc-CCCCCCcccccC----CCCceEEccCCc-cccccchhhhccccc
Q 001238 460 SLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGSNR-LTGSIPDEITGC----RNLTFLDVHSNS-IAGNLPAGLHQLVRL 533 (1117)
Q Consensus 460 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 533 (1117)
.|+.|+++++.+++..-..+..+++|+.|+|++|. |++..-..+..+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544433445556666666666653 443322333332 245666666553 543322333334444
Q ss_pred ccccccC
Q 001238 534 QFADLSD 540 (1117)
Q Consensus 534 ~~L~Ls~ 540 (1117)
+.|++++
T Consensus 142 ~~L~L~~ 148 (176)
T 3e4g_A 142 KYLFLSD 148 (176)
T ss_dssp CEEEEES
T ss_pred CEEECCC
Confidence 4444433
No 432
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.22 E-value=0.00054 Score=76.16 Aligned_cols=143 Identities=13% Similarity=0.178 Sum_probs=81.6
Q ss_pred CeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCC--cceEEee------eecCCceEEEEEe
Q 001238 782 NIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRN--IVRLLGW------GANRKTKLLFYDY 853 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~~~------~~~~~~~~lv~e~ 853 (1117)
+.|+.|....+|++...+| .+++|+.... ...+.+..|+++++.+...+ +++++.. ....+..+++|+|
T Consensus 28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~ 104 (322)
T 2ppq_A 28 KGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISF 104 (322)
T ss_dssp EEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEEC
T ss_pred eccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEe
Confidence 4567788899999987555 6889988652 12345777888888774222 3444422 1223567899999
Q ss_pred cCCCChhh--------------hhcCC----CCC-----CCCCHHHHHH------------HHHHHHHHHHHHhcc----
Q 001238 854 MPNGTLGM--------------LLHDG----ECA-----GLLEWDTRFK------------IALGVAEGLSYLHHD---- 894 (1117)
Q Consensus 854 ~~~gsL~~--------------~l~~~----~~~-----~~l~~~~~~~------------i~~~i~~~L~~LH~~---- 894 (1117)
++|..+.. .++.. ... +...|..... +...+.+.++++++.
T Consensus 105 l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~ 184 (322)
T 2ppq_A 105 LEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKD 184 (322)
T ss_dssp CCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCccc
Confidence 99865421 01110 000 0011222110 011234455555432
Q ss_pred CCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 895 CVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 895 ~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
..++++|+|+.+.||++++++.+.++||+.+..
T Consensus 185 ~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 185 LPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp SCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred CCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 234799999999999999876668999987753
No 433
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.20 E-value=0.0024 Score=71.03 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=83.6
Q ss_pred CeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCC--cceEEee-----eecCCceEEEEEec
Q 001238 782 NIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRN--IVRLLGW-----GANRKTKLLFYDYM 854 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~n--iv~l~~~-----~~~~~~~~lv~e~~ 854 (1117)
+.++ |....||++...+|+.+++|+..... .....+..|+++++.+.... +++++.. ....+..+++|||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 4566 88889999987778789999986432 24567788999888884222 4445443 12244567899999
Q ss_pred CCCChhh-----------h---hcC----CC--CCCCCCHHHH----HHH---------------HHHHHHHHHHHhc--
Q 001238 855 PNGTLGM-----------L---LHD----GE--CAGLLEWDTR----FKI---------------ALGVAEGLSYLHH-- 893 (1117)
Q Consensus 855 ~~gsL~~-----------~---l~~----~~--~~~~l~~~~~----~~i---------------~~~i~~~L~~LH~-- 893 (1117)
+|..+.. . ++. .. .....++... ..+ ...+...++.+.+
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8864321 0 111 00 0011222111 000 1111122223221
Q ss_pred --cCCCceeeeccccCeEEEcCCCcceecccccccc
Q 001238 894 --DCVPAILHRDVKSHNILLGERYESCLADFGLARL 927 (1117)
Q Consensus 894 --~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~ 927 (1117)
...+.++|+|+++.||+++ + .+.++||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 1234789999999999999 4 889999988764
No 434
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.17 E-value=0.0012 Score=72.67 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=47.0
Q ss_pred CCeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCc-ceEEeeeecCCceEEEEEec-CCCC
Q 001238 781 GNIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNI-VRLLGWGANRKTKLLFYDYM-PNGT 858 (1117)
Q Consensus 781 ~~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e~~-~~gs 858 (1117)
.+.|+.|....+|++ +.+++|+....... .-...+|+++++.+...++ ++++++. .+..++++||+ +|.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence 678999999999999 46888987653221 1234678888888743333 5666543 33457899999 6654
Q ss_pred h
Q 001238 859 L 859 (1117)
Q Consensus 859 L 859 (1117)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 435
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.15 E-value=0.0013 Score=76.21 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=50.8
Q ss_pred CeeeecCCeEEEEEEcCC--------CcEEEEEEeecCCccchHHHHHHHHHHhccCCCC-cceEEeeeecCCceEEEEE
Q 001238 782 NIIGQGRSGIVYKVTLPS--------GLTVAVKRFRASDKISTGAFSSEIATLSRIRHRN-IVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~l~~~~~~~~~~~lv~e 852 (1117)
+.|+.|....||++...+ ++.|++|+.... ...+.+.+|+.+++.+...+ .+++++.+.+ .+|||
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e 152 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE 152 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEE
Confidence 568888899999998653 578999988432 12245668999999885333 3677776542 38999
Q ss_pred ecCCCCh
Q 001238 853 YMPNGTL 859 (1117)
Q Consensus 853 ~~~~gsL 859 (1117)
|++|.++
T Consensus 153 ~l~G~~l 159 (429)
T 1nw1_A 153 YIPSRPL 159 (429)
T ss_dssp CCCEEEC
T ss_pred EeCCccc
Confidence 9986544
No 436
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.09 E-value=0.0016 Score=73.47 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=84.9
Q ss_pred CeeeecCCeEEEEEEcC--------CCcEEEEEEeecCCccchHHHHHHHHHHhccC-CCCcceEEeeeecCCceEEEEE
Q 001238 782 NIIGQGRSGIVYKVTLP--------SGLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~lv~e 852 (1117)
+.+..|-...+|++... +++.|++|+.... ......+.+|.++++.+. +.-.+++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 45777888899998864 2578999986432 223556779999998884 3334677776654 39999
Q ss_pred ecCCCChhhh-----------------hcCCCC--CCCC--CHHHHHHHHHHHHH-------------------HHHHHh
Q 001238 853 YMPNGTLGML-----------------LHDGEC--AGLL--EWDTRFKIALGVAE-------------------GLSYLH 892 (1117)
Q Consensus 853 ~~~~gsL~~~-----------------l~~~~~--~~~l--~~~~~~~i~~~i~~-------------------~L~~LH 892 (1117)
|++|..+..- ++.... .... -+.++.++..++.. .++.|.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 9998665311 111110 1112 24555555544322 223332
Q ss_pred ----cc-CCCceeeeccccCeEEEcCC----Ccceecccccccc
Q 001238 893 ----HD-CVPAILHRDVKSHNILLGER----YESCLADFGLARL 927 (1117)
Q Consensus 893 ----~~-~~~~ivHrDlkp~Nill~~~----~~~kl~DfGla~~ 927 (1117)
.. ....++|+|+.+.||+++++ +.+.++||..+..
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 11 22478999999999999876 6889999988764
No 437
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=97.07 E-value=0.0026 Score=73.92 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=48.7
Q ss_pred CeeeecCCeEEEEEEcCC-CcEEEEEEeecCCccchHHHHHHHHHHhccCCCCc-ceEEeeeecCCceEEEEEecCCCCh
Q 001238 782 NIIGQGRSGIVYKVTLPS-GLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNI-VRLLGWGANRKTKLLFYDYMPNGTL 859 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~ni-v~l~~~~~~~~~~~lv~e~~~~gsL 859 (1117)
+.|+.|-...+|++...+ +..|++|+....... .-...+|.++++.+...++ +++++++. + ..||||++|.++
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l 188 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL 188 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence 568888889999998755 578889987543221 1123689999999865444 57777663 2 359999987554
No 438
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.95 E-value=0.00011 Score=74.08 Aligned_cols=110 Identities=10% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCCCEEEccCC-cCCCC----CCcccccCCCCceEEccCCccccc----cchhhhcccccccccccCCcCCCCCCC----
Q 001238 483 KNLNFLDLGSN-RLTGS----IPDEITGCRNLTFLDVHSNSIAGN----LPAGLHQLVRLQFADLSDNSVGGMLSP---- 549 (1117)
Q Consensus 483 ~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~~~---- 549 (1117)
+.|++|+|++| +|... +-+.+...+.|+.|+|++|.|... +...+...+.|+.|+|++|.|++....
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555553 44321 122333445555555555555432 223334445555555555555543221
Q ss_pred CcCCCccccEEeccccc---cCC----CCCcccccccceeEEeccccccc
Q 001238 550 DLGSLSSLTKLVLNKNR---FAG----SIPSQLGSCVKLQLLDLSSNQLS 592 (1117)
Q Consensus 550 ~~~~l~~L~~L~L~~N~---l~~----~~~~~~~~l~~L~~L~Ls~N~l~ 592 (1117)
++..-+.|++|+|++|. +.. .+..++...+.|+.|+++.|.+.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 22333557778887653 221 13345666778888888877654
No 439
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.75 E-value=0.0028 Score=71.90 Aligned_cols=73 Identities=14% Similarity=0.085 Sum_probs=45.7
Q ss_pred CeeeecCCeEEEEEEcCC---------CcEEEEEEeecCCccchHHHHHHHHHHhccCCCC-cceEEeeeecCCceEEEE
Q 001238 782 NIIGQGRSGIVYKVTLPS---------GLTVAVKRFRASDKISTGAFSSEIATLSRIRHRN-IVRLLGWGANRKTKLLFY 851 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~n-iv~l~~~~~~~~~~~lv~ 851 (1117)
+.++.|....+|++...+ ++.+++|+...... .......|.++++.+...+ ++++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 457778888999987643 26888998764322 1123467888888885333 45677544 2 37899
Q ss_pred EecCCCCh
Q 001238 852 DYMPNGTL 859 (1117)
Q Consensus 852 e~~~~gsL 859 (1117)
||++|..+
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99987644
No 440
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.74 E-value=0.00021 Score=72.16 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=18.3
Q ss_pred ccccceeecccc-cccCC----CcccccCCCCCCeeeccCccCC
Q 001238 410 CQNLEAVDLSQN-GLTGP----IPRGIFQLKKLNKLLLLSNNLS 448 (1117)
Q Consensus 410 l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 448 (1117)
-+.|++|+|++| +|... +...+..-..|+.|+|++|+|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 345666666654 54321 2222333445555555555554
No 441
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.69 E-value=0.0046 Score=69.09 Aligned_cols=66 Identities=9% Similarity=0.130 Sum_probs=43.9
Q ss_pred cCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccC---CCCcceEEee------eecCCceEEEEEecCCC
Q 001238 787 GRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIR---HRNIVRLLGW------GANRKTKLLFYDYMPNG 857 (1117)
Q Consensus 787 G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---H~niv~l~~~------~~~~~~~~lv~e~~~~g 857 (1117)
|....||++...+| .+++|+...... ..|+++++.+. -|.+++.+.. ....+..+++|+|++|.
T Consensus 34 g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~ 106 (339)
T 3i1a_A 34 DTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAP 106 (339)
T ss_dssp CSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCCC
T ss_pred ccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCCC
Confidence 33679999987777 899998765431 35666666663 1325555532 23346678999999987
Q ss_pred Ch
Q 001238 858 TL 859 (1117)
Q Consensus 858 sL 859 (1117)
.+
T Consensus 107 ~~ 108 (339)
T 3i1a_A 107 NG 108 (339)
T ss_dssp BT
T ss_pred cC
Confidence 65
No 442
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.37 E-value=0.0023 Score=60.27 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=43.0
Q ss_pred EEeccccccc-cccccccCCchhHHHhhcCCCCcccCCccccccCCCCccEEeccCccccCCcch
Q 001238 583 LLDLSSNQLS-GNIPASLGKIPALAIALNLSWNQICGELPAELTGLNKLGILDLSHNELSGDLHF 646 (1117)
Q Consensus 583 ~L~Ls~N~l~-~~~p~~l~~l~~l~~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~~~~ 646 (1117)
.+|.+++.|+ ..+|..+ +.-++.|+|++|+|+...+..|..+++|+.|+|++|+|.++...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 5666666665 2444432 22225677777777766677788899999999999999987653
No 443
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.08 E-value=0.024 Score=64.25 Aligned_cols=142 Identities=22% Similarity=0.244 Sum_probs=83.9
Q ss_pred CeeeecCCeEEEEEEcCC--------CcEEEEEEeecCCcc-----------c-------hHHHHHHHHHHhccC-CCCc
Q 001238 782 NIIGQGRSGIVYKVTLPS--------GLTVAVKRFRASDKI-----------S-------TGAFSSEIATLSRIR-HRNI 834 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~-----------~-------~~~~~~E~~~l~~l~-H~ni 834 (1117)
+.|..|-...+|++..++ ++.|.+++.-..... . .+....|.++++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456668888999988654 368889887543211 0 112335888888884 4445
Q ss_pred ceEEeeeecCCceEEEEEecCCCChhh--h---------------hcCCC--CCCCCC--HHHHHHHHHHHH--------
Q 001238 835 VRLLGWGANRKTKLLFYDYMPNGTLGM--L---------------LHDGE--CAGLLE--WDTRFKIALGVA-------- 885 (1117)
Q Consensus 835 v~l~~~~~~~~~~~lv~e~~~~gsL~~--~---------------l~~~~--~~~~l~--~~~~~~i~~~i~-------- 885 (1117)
+++++++.+ .+|+||++|-+|.. + +|... ...... +.+..++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 677877643 38999999765521 1 11110 011122 334444443321
Q ss_pred --------------HHH----HHHhcc-CCCceeeeccccCeEEEcCC------Ccceecccccccc
Q 001238 886 --------------EGL----SYLHHD-CVPAILHRDVKSHNILLGER------YESCLADFGLARL 927 (1117)
Q Consensus 886 --------------~~L----~~LH~~-~~~~ivHrDlkp~Nill~~~------~~~kl~DfGla~~ 927 (1117)
.-+ +++... ....++|+|+.+.||+++++ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 112 222221 23478999999999999876 7899999988753
No 444
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.81 E-value=0.022 Score=65.12 Aligned_cols=73 Identities=7% Similarity=0.030 Sum_probs=49.6
Q ss_pred CeeeecCCeEEEEEEcCC--------CcEEEEEEeecCCccchHHHHHHHHHHhccC-CCCcceEEeeeecCCceEEEEE
Q 001238 782 NIIGQGRSGIVYKVTLPS--------GLTVAVKRFRASDKISTGAFSSEIATLSRIR-HRNIVRLLGWGANRKTKLLFYD 852 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-H~niv~l~~~~~~~~~~~lv~e 852 (1117)
+.+..|-...+|++...+ ++.|++|+...... ..-...+|.++++.+. +.-.+++++.+. -+.|||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~-~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~e 150 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVG-KFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEE 150 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcc-hhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEE
Confidence 457778888999988653 57899998754322 1223468999998884 333456665432 378999
Q ss_pred ecCCCCh
Q 001238 853 YMPNGTL 859 (1117)
Q Consensus 853 ~~~~gsL 859 (1117)
|++|..+
T Consensus 151 fI~G~~l 157 (424)
T 3mes_A 151 FIDGEPL 157 (424)
T ss_dssp CCCSEEC
T ss_pred EeCCccC
Confidence 9998764
No 445
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.78 E-value=0.012 Score=55.29 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=34.6
Q ss_pred EEEcCCCcCC-CCCccccCCCCCcceEecccccccCcccccccCCCCCcEEEecCcccc
Q 001238 319 IIDISMNSLT-GSIPQTLGNLTSLQELQLSVNQISGEIPAQIGNCQRLAQIELDNNQIT 376 (1117)
Q Consensus 319 ~LdLs~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 376 (1117)
.+|.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 23444332 35667777777776655566666777777777777654
No 446
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=92.64 E-value=0.3 Score=49.43 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=65.9
Q ss_pred CChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCeEEEcCCCcceeccccccccccCCCCCcc
Q 001238 857 GTLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHNILLGERYESCLADFGLARLVEDDSGGSF 936 (1117)
Q Consensus 857 gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 936 (1117)
-+|.++|+... .++++++++.++.|.+++|.-.-.+.. . ..+=+-|..|++..+|.+...+ +.+.
T Consensus 33 vSL~eIL~~~~--~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~---------- 97 (229)
T 2yle_A 33 LSLEEILRLYN--QPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD---------- 97 (229)
T ss_dssp EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C-------------
T ss_pred ccHHHHHHHcC--CCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc----------
Confidence 37888887653 459999999999999999877621100 1 1222346889999999987653 1110
Q ss_pred ccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCC
Q 001238 937 SANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPV 982 (1117)
Q Consensus 937 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~ 982 (1117)
.....+.|||... ...+.+.=|||+|+++|..+--..|-
T Consensus 98 ------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e 136 (229)
T 2yle_A 98 ------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKE 136 (229)
T ss_dssp ---------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred ------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCc
Confidence 0122456777653 34567788999999999998855543
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=92.17 E-value=0.45 Score=54.15 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=24.8
Q ss_pred ceeeeccccCeEEE------cCCCcceecccccccc
Q 001238 898 AILHRDVKSHNILL------GERYESCLADFGLARL 927 (1117)
Q Consensus 898 ~ivHrDlkp~Nill------~~~~~~kl~DfGla~~ 927 (1117)
.++|+|+.+.||++ +++..++++||-+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 46799999999999 3456789999988764
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.79 E-value=0.43 Score=34.50 Aligned_cols=28 Identities=7% Similarity=-0.089 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheeccc
Q 001238 712 RVAMVVLLSAACALLLAALYIILGPRIR 739 (1117)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1117)
+.++++.+++++++++++.++++++|++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 4445555555555555555555555444
No 449
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=88.44 E-value=0.53 Score=33.93 Aligned_cols=29 Identities=7% Similarity=-0.150 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhheeccc
Q 001238 711 ARVAMVVLLSAACALLLAALYIILGPRIR 739 (1117)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1117)
++.++++.+++++++++++.++++++|++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444444455555555555555555443
No 450
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=82.52 E-value=1.9 Score=31.02 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheecc
Q 001238 713 VAMVVLLSAACALLLAALYIILGPRI 738 (1117)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1117)
+++.+++.++++++++++++|++||+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhh
Confidence 44444444433444444444444443
No 451
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=82.26 E-value=3.4 Score=41.90 Aligned_cols=85 Identities=9% Similarity=0.025 Sum_probs=62.8
Q ss_pred CCCCcceEEeeeecCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHH-HHhccCCCceeeeccccCe
Q 001238 830 RHRNIVRLLGWGANRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGVAEGLS-YLHHDCVPAILHRDVKSHN 908 (1117)
Q Consensus 830 ~H~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~-~LH~~~~~~ivHrDlkp~N 908 (1117)
.||++ -..+-.+++...+.++.-+++.=...++. .+...+++++.+|+.... ++++. +|--+.|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~~------~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIRK------TTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHHT------SCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHHh------cCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCce
Confidence 68888 33344666777777776544322223322 678899999999999888 77765 888999999
Q ss_pred EEEcCCCcceecccccccc
Q 001238 909 ILLGERYESCLADFGLARL 927 (1117)
Q Consensus 909 ill~~~~~~kl~DfGla~~ 927 (1117)
+++|.++.+++.-.|+-..
T Consensus 115 L~f~~~~~p~i~hRGi~~~ 133 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKES 133 (219)
T ss_dssp EEECTTCCEEESCCEETTT
T ss_pred EEEeCCCcEEEEEcCCccc
Confidence 9999999999988887543
No 452
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=82.19 E-value=2.2 Score=43.02 Aligned_cols=115 Identities=10% Similarity=0.088 Sum_probs=77.3
Q ss_pred CCCCcceEEeeeecCCceEEEEEecCCC-ChhhhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCceeeeccccCe
Q 001238 830 RHRNIVRLLGWGANRKTKLLFYDYMPNG-TLGMLLHDGECAGLLEWDTRFKIALGVAEGLSYLHHDCVPAILHRDVKSHN 908 (1117)
Q Consensus 830 ~H~niv~l~~~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivHrDlkp~N 908 (1117)
.||+.+.. .+-.+++...+.|+.-+.+ +... ++ ..+...+++++.+|+...+++++. +|--+.|+|
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik------~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~N 109 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK------SFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDE 109 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG------GSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGG
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH------hcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecce
Confidence 68888866 4555556555555543322 2222 22 267899999999999999777766 889999999
Q ss_pred EEEcCCCcceeccccccccccCCCCCccccCCccccccccCChhhhccCCCCcCCCeeehhhhHHHHHhCCCCCC
Q 001238 909 ILLGERYESCLADFGLARLVEDDSGGSFSANPQFAGSYGYIAPEYANMTKISEKSDVYSYGVVLLEIITGKKPVD 983 (1117)
Q Consensus 909 ill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~SlG~vl~ell~g~~P~~ 983 (1117)
++++.++.+++.-.|+...+.+. =+.+|-+. -.+=+++..+++++..|+
T Consensus 110 L~f~~~~~p~i~~RGik~~l~P~----------------~~~ee~fL----------~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 110 LFFTRDGLPIAKTRGLQNVVDPL----------------PVSEAEFL----------TRYKALVICAFNEKQSFD 158 (215)
T ss_dssp EEECTTSCEEESCCEETTTBSCC----------------CCCHHHHH----------HHHHHHHHHHHCTTCCHH
T ss_pred EEEcCCCCEEEEEccCccCCCCC----------------CCCHHHHH----------HHHHHHHHHHHcCCCCHH
Confidence 99999999999888775433211 01223211 124467888899988874
No 453
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=78.93 E-value=3.1 Score=29.10 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 001238 710 AARVAMVVLLSAACALLLAAL 730 (1117)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~ 730 (1117)
.-.++++++++++.+++++++
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHHHH
Confidence 344566666555544433333
No 454
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=74.31 E-value=0.38 Score=55.73 Aligned_cols=61 Identities=3% Similarity=-0.034 Sum_probs=17.9
Q ss_pred CCCCeeeecCCeEEEEEEcCC-CcEEEE------EEeecC--CccchHHHHHHHHHHhccCCCCcceEEeeee
Q 001238 779 TAGNIIGQGRSGIVYKVTLPS-GLTVAV------KRFRAS--DKISTGAFSSEIATLSRIRHRNIVRLLGWGA 842 (1117)
Q Consensus 779 ~~~~~lg~G~fg~Vy~~~~~~-~~~vav------K~~~~~--~~~~~~~~~~E~~~l~~l~H~niv~l~~~~~ 842 (1117)
.+.+.+| ||.||+|.+.. ..+||| |..+.. .......|.+|..+++.++|||+++.+++..
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 3445676 99999998754 367888 665532 2223346888999999999999999887654
No 455
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.46 E-value=12 Score=32.58 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=35.3
Q ss_pred CCcCCCCCCCCcCCCccccEEeccccccCCCCCcccccccceeEEeccc
Q 001238 540 DNSVGGMLSPDLGSLSSLTKLVLNKNRFAGSIPSQLGSCVKLQLLDLSS 588 (1117)
Q Consensus 540 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 588 (1117)
+..++.|...+|.++.+|+.+.+-.+ ++.+...+|..|.+|+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34566777778888888888888765 5556677788888888887765
No 456
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=42.78 E-value=23 Score=24.99 Aligned_cols=7 Identities=14% Similarity=-0.054 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001238 716 VVLLSAA 722 (1117)
Q Consensus 716 ~~~~~~~ 722 (1117)
++++.++
T Consensus 19 vv~Gv~l 25 (41)
T 2k9y_A 19 VAVGVVL 25 (41)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 3333333
No 457
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=42.49 E-value=68 Score=34.53 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=71.8
Q ss_pred CeeeecCCeEEEEEEcCCCcEEEEEEeecCCccchHHHHHHHHHHhccCCCCcceEEee-------------ee------
Q 001238 782 NIIGQGRSGIVYKVTLPSGLTVAVKRFRASDKISTGAFSSEIATLSRIRHRNIVRLLGW-------------GA------ 842 (1117)
Q Consensus 782 ~~lg~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~H~niv~l~~~-------------~~------ 842 (1117)
+....|. +-||.+.. ++..|+||-. .....+.|-.++...-.+.-|+..-+... +.
T Consensus 75 ~~s~~Gs-tgvff~~t-d~~~~VVK~s---~~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l 149 (342)
T 1cja_A 75 ERSEKGT-EGLFFVET-ESGVFIVKRS---TNIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFRVI 149 (342)
T ss_dssp EECCSTT-SCEEEEEE-SSCEEEEECC---TTHHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSSSCHH
T ss_pred EeccCCC-CCeEEEEe-CCCEEEEeCc---HHHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHH
Confidence 4444555 45555444 5778999943 22234455566666666666664322211 00
Q ss_pred ---cCCceEEEEEecCCCChhhhhcCCCCCCCCCHHHHHHHHHHH--HHHHHHHhccCC--CceeeeccccCeEEEcCCC
Q 001238 843 ---NRKTKLLFYDYMPNGTLGMLLHDGECAGLLEWDTRFKIALGV--AEGLSYLHHDCV--PAILHRDVKSHNILLGERY 915 (1117)
Q Consensus 843 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~i--~~~L~~LH~~~~--~~ivHrDlkp~Nill~~~~ 915 (1117)
.....+++|||.+|..|...-... ....+..+ .+.++ +-+++.+..+.. |-+-+.--.++|||+++++
T Consensus 150 ~~l~~~~~~l~meyv~G~~L~e~~~~~-~~~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n 224 (342)
T 1cja_A 150 TTLANQANILLMELVRGITLNKLTTTS-APEVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERG 224 (342)
T ss_dssp HHHTTCSEEEEEECCCEEESTTCCSSS-HHHHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBT
T ss_pred HHhhcccceehhhhcCCCccccchhhh-hhhhcCHH----HHHhhchhheehhhhcCCccCcccccCCCChhheEEeCCC
Confidence 112356999999976665432221 00112222 22332 335566655432 1111223589999998765
Q ss_pred c-ceecccccccc
Q 001238 916 E-SCLADFGLARL 927 (1117)
Q Consensus 916 ~-~kl~DfGla~~ 927 (1117)
. +.++|-+.+..
T Consensus 225 ~~~~~IDhn~af~ 237 (342)
T 1cja_A 225 ATVVPIDSKIIPL 237 (342)
T ss_dssp TCEEECSCCCCCC
T ss_pred CeEEEEcCCcccc
Confidence 5 78899998854
No 458
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.27 E-value=58 Score=28.20 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=26.6
Q ss_pred cCCCCCCCCcccccccceeccCCCcccccCCCCcCCCCCCCEEEccC
Q 001238 446 NLSGVIPPEMGNCSSLIRFRANSNKLTGFIPPEIGNLKNLNFLDLGS 492 (1117)
Q Consensus 446 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 492 (1117)
.++.+....|.+|++|+.+.+-.+ ++.+....|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344455556666666666666543 3334455666666666666654
No 459
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=38.46 E-value=11 Score=25.68 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhheec
Q 001238 714 AMVVLLSAACALLLAALYIILGPR 737 (1117)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1117)
+..+++.++++++...+.++++||
T Consensus 11 aagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 11 IATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhheEEeec
Confidence 333333333333333334444443
No 460
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=23.87 E-value=1e+02 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 001238 710 AARVAMVVLLSAACALLLAALYII 733 (1117)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1117)
...+++++++.++..+++.+.+++
T Consensus 6 ~gaIaGIVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHHHHHHHHHHhh
Confidence 345566665555544443333333
No 461
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=23.77 E-value=1e+02 Score=24.44 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 001238 713 VAMVVLLS 720 (1117)
Q Consensus 713 ~~~~~~~~ 720 (1117)
+.+.++++
T Consensus 18 iGGLifA~ 25 (72)
T 2jo1_A 18 IGGLVIAG 25 (72)
T ss_dssp HHHHHHHH
T ss_pred ccchHHHH
Confidence 33433333
No 462
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=22.99 E-value=25 Score=20.30 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=6.8
Q ss_pred CCcceeeEE
Q 001238 61 TPCKWFGVS 69 (1117)
Q Consensus 61 ~~C~W~gv~ 69 (1117)
..|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 459999963
No 463
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=22.83 E-value=77 Score=21.10 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhheec
Q 001238 717 VLLSAACALLLAALYIILGPR 737 (1117)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~ 737 (1117)
+++.+++.++.-..+++|+-|
T Consensus 13 i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 13 IAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCceeEEEccc
Confidence 344444444444445555444
No 464
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=22.27 E-value=1.6e+02 Score=23.29 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhheecccc
Q 001238 711 ARVAMVVLLSAACALLLAALYIILGPRIRG 740 (1117)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1117)
..+..++++++++.+++...+.+++-++-.
T Consensus 15 vtv~viliavaalg~li~gcwcylrlqri~ 44 (90)
T 1zza_A 15 VTVIVILIAIAALGALILGCWCYLRLQRIS 44 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCSSC
T ss_pred EEehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555566666667777665443
Done!