Query 001240
Match_columns 1116
No_of_seqs 173 out of 211
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 19:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10474 DUF2451: Protein of u 100.0 5E-72 1.1E-76 604.5 26.8 228 883-1113 1-234 (234)
2 KOG2939 Uncharacterized conser 100.0 3.6E-65 7.7E-70 563.9 26.3 493 340-988 1-501 (502)
3 PF10475 DUF2450: Protein of u 100.0 2.2E-56 4.7E-61 501.6 35.4 290 125-414 1-291 (291)
4 KOG2115 Vacuolar sorting prote 100.0 3.6E-39 7.8E-44 382.4 61.0 654 120-1007 190-903 (951)
5 KOG2346 Uncharacterized conser 99.8 1.8E-20 4E-25 210.7 13.4 209 135-354 31-244 (636)
6 PF15469 Sec5: Exocyst complex 99.0 4.1E-08 8.9E-13 103.7 19.3 143 173-315 2-152 (182)
7 PF04100 Vps53_N: Vps53-like, 98.9 7.9E-06 1.7E-10 95.9 39.0 213 135-349 2-224 (383)
8 KOG2307 Low density lipoprotei 98.9 0.0006 1.3E-08 80.1 49.8 203 129-337 25-237 (705)
9 PF04048 Sec8_exocyst: Sec8 ex 98.4 1.2E-05 2.6E-10 81.6 16.4 136 122-260 3-142 (142)
10 KOG3691 Exocyst complex subuni 98.4 0.023 4.9E-07 70.6 59.8 210 884-1096 717-950 (982)
11 PF07928 Vps54: Vps54-like pro 98.3 4.9E-07 1.1E-11 90.6 4.1 129 768-946 2-131 (135)
12 PF10191 COG7: Golgi complex c 98.1 0.076 1.6E-06 68.2 61.2 215 132-351 5-227 (766)
13 KOG2180 Late Golgi protein sor 98.1 0.053 1.1E-06 66.2 56.8 189 123-312 5-197 (793)
14 PF06248 Zw10: Centromere/kine 98.1 0.0084 1.8E-07 75.0 37.3 196 154-351 9-238 (593)
15 PF04124 Dor1: Dor1-like famil 98.1 0.0031 6.8E-08 73.2 30.3 194 154-353 9-204 (338)
16 KOG2939 Uncharacterized conser 97.7 6.9E-05 1.5E-09 85.9 6.8 139 975-1115 29-196 (502)
17 PF08700 Vps51: Vps51/Vps67; 97.6 0.0006 1.3E-08 63.1 10.3 77 134-212 3-79 (87)
18 PF10392 COG5: Golgi transport 97.6 0.0026 5.6E-08 63.9 15.6 122 130-252 1-127 (132)
19 KOG0412 Golgi transport comple 96.6 0.93 2E-05 55.9 27.0 207 152-362 31-251 (773)
20 PF06148 COG2: COG (conserved 96.5 0.0021 4.6E-08 64.5 3.5 88 130-222 6-93 (133)
21 KOG2069 Golgi transport comple 96.1 2.8 6E-05 51.0 27.0 150 154-313 33-193 (581)
22 KOG2347 Sec5 subunit of exocys 94.8 0.72 1.6E-05 57.9 16.4 189 126-319 162-356 (934)
23 PF04091 Sec15: Exocyst comple 94.7 0.11 2.3E-06 59.9 8.9 114 930-1045 137-253 (311)
24 KOG4182 Uncharacterized conser 94.6 6.3 0.00014 46.6 22.4 179 134-312 8-196 (828)
25 KOG2176 Exocyst complex, subun 92.4 40 0.00087 42.9 58.9 120 168-287 57-178 (800)
26 PF06046 Sec6: Exocyst complex 91.3 4.1 8.9E-05 50.8 16.3 217 886-1113 314-546 (566)
27 KOG2211 Predicted Golgi transp 90.6 55 0.0012 40.9 27.6 121 160-280 76-199 (797)
28 PF04437 RINT1_TIP1: RINT-1 / 87.1 4.9 0.00011 49.4 12.3 143 923-1069 299-450 (494)
29 PRK04778 septation ring format 84.1 99 0.0022 38.9 21.8 145 138-285 44-212 (569)
30 PF12022 DUF3510: Domain of un 83.4 5.3 0.00012 39.8 8.3 60 956-1016 19-78 (125)
31 KOG2033 Low density lipoprotei 83.3 1.4E+02 0.003 37.7 24.8 127 154-283 19-146 (863)
32 COG4477 EzrA Negative regulato 68.5 3E+02 0.0064 34.1 18.3 101 184-286 97-212 (570)
33 KOG1937 Uncharacterized conser 64.1 2.9E+02 0.0062 33.4 16.7 82 192-275 397-483 (521)
34 PF12777 MT: Microtubule-bindi 59.9 2.2E+02 0.0048 33.4 15.5 90 263-363 81-179 (344)
35 cd01068 sensor_globin Globin d 53.6 1.1E+02 0.0024 30.7 10.3 104 901-1019 18-123 (147)
36 PF06160 EzrA: Septation ring 52.2 5.8E+02 0.013 32.1 30.3 167 138-304 40-236 (560)
37 PF10191 COG7: Golgi complex c 52.0 6.8E+02 0.015 32.8 34.9 72 1002-1077 681-752 (766)
38 COG5290 IkappaB kinase complex 46.2 2.5E+02 0.0054 36.2 13.0 83 263-345 877-960 (1243)
39 PF03036 Perilipin: Perilipin 44.8 3.4E+02 0.0074 32.5 14.0 62 287-348 325-388 (391)
40 PF04129 Vps52: Vps52 / Sac2 f 43.6 7.4E+02 0.016 30.8 21.6 70 249-318 81-156 (508)
41 PRK10869 recombination and rep 40.1 8.6E+02 0.019 30.6 18.7 61 268-330 241-305 (553)
42 cd07665 BAR_SNX1 The Bin/Amphi 40.1 5.7E+02 0.012 28.5 18.2 54 175-228 13-69 (234)
43 KOG2008 BTK-associated SH3-dom 40.0 6.4E+02 0.014 29.1 14.6 87 167-254 53-140 (426)
44 COG3850 NarQ Signal transducti 36.0 2.9E+02 0.0062 34.3 11.2 94 238-336 378-473 (574)
45 smart00592 BRK domain in trans 35.0 24 0.00052 28.9 1.6 17 1067-1083 24-40 (45)
46 KOG2148 Exocyst protein Sec3 [ 34.3 1.1E+03 0.024 30.1 18.9 116 163-284 197-322 (867)
47 KOG1853 LIS1-interacting prote 33.2 6E+02 0.013 28.5 12.0 32 186-217 86-117 (333)
48 PF10241 KxDL: Uncharacterized 32.4 4.2E+02 0.0092 24.8 10.0 44 173-216 39-82 (88)
49 KOG2122 Beta-catenin-binding p 31.9 5.7E+02 0.012 35.6 13.5 84 230-316 271-372 (2195)
50 KOG0251 Clathrin assembly prot 31.4 1.3E+02 0.0027 37.2 7.5 170 890-1077 76-261 (491)
51 PF08318 COG4: COG4 transport 29.5 4.4E+02 0.0095 30.7 11.4 101 298-413 3-103 (331)
52 KOG2286 Exocyst complex subuni 28.6 1.4E+03 0.03 29.5 21.5 173 922-1113 465-649 (667)
53 PF08785 Ku_PK_bind: Ku C term 27.8 1.5E+02 0.0032 29.3 6.1 41 249-289 23-66 (120)
54 PF11563 Protoglobin: Protoglo 26.9 2.6E+02 0.0057 28.2 8.1 102 901-1017 20-123 (158)
55 PF04782 DUF632: Protein of un 26.5 1.1E+03 0.023 27.5 13.7 38 281-319 197-234 (312)
56 PF06419 COG6: Conserved oligo 25.4 1.5E+03 0.032 28.9 41.7 185 176-364 26-228 (618)
57 KOG4603 TBP-1 interacting prot 25.4 8E+02 0.017 26.0 10.8 57 190-246 115-173 (201)
58 COG5051 RPL36A Ribosomal prote 25.2 35 0.00077 31.6 1.1 22 81-102 34-55 (97)
59 PF10281 Ish1: Putative stress 24.0 1.1E+02 0.0024 23.9 3.5 24 1067-1090 5-34 (38)
60 cd07648 F-BAR_FCHO The F-BAR ( 23.5 1.1E+03 0.023 26.4 19.8 26 340-365 220-246 (261)
61 KOG2129 Uncharacterized conser 23.0 1.4E+03 0.03 27.6 15.3 155 47-217 14-191 (552)
62 KOG0810 SNARE protein Syntaxin 23.0 1.2E+03 0.026 26.9 18.0 106 153-259 34-148 (297)
63 PF10482 CtIP_N: Tumour-suppre 22.9 5.5E+02 0.012 25.4 8.5 69 240-316 4-74 (120)
64 PF07533 BRK: BRK domain; Int 22.9 40 0.00087 27.8 0.9 14 1069-1082 28-41 (46)
65 PF03357 Snf7: Snf7; InterPro 22.4 7.6E+02 0.016 25.1 10.7 53 248-300 65-117 (171)
66 cd07664 BAR_SNX2 The Bin/Amphi 22.2 1.1E+03 0.024 26.2 18.4 54 175-228 13-69 (234)
67 PF14782 BBS2_C: Ciliary BBSom 22.0 1E+03 0.022 29.0 12.8 102 165-282 316-420 (431)
68 TIGR00634 recN DNA repair prot 21.5 1.7E+03 0.036 28.0 17.7 62 268-332 248-312 (563)
69 PF13779 DUF4175: Domain of un 21.3 1.1E+03 0.023 31.4 13.5 37 248-284 538-574 (820)
70 PF00846 Hanta_nucleocap: Hant 21.0 5.4E+02 0.012 30.6 9.6 59 190-248 1-62 (428)
71 cd07651 F-BAR_PombeCdc15_like 20.7 1.1E+03 0.025 25.7 17.9 56 162-217 70-126 (236)
72 PF07139 DUF1387: Protein of u 20.3 1.4E+03 0.03 26.5 15.8 80 192-272 183-267 (302)
No 1
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=100.00 E-value=5e-72 Score=604.50 Aligned_cols=228 Identities=45% Similarity=0.722 Sum_probs=224.0
Q ss_pred ccchhhhHHHHhHHHHHHHHHHHhHHHHHHhcchhh--hHHHHHhhhhhhhhHHHHHHHHHHHHHHcChhhHHHHhhhcc
Q 001240 883 SFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNT--AIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAK 960 (1116)
Q Consensus 883 lygL~eRiVA~ESl~fla~~l~~l~p~L~~~Lp~~~--~l~~Fy~qtv~~~~dLr~~iy~~va~~~l~~~~~~~~ia~vk 960 (1116)
||||+|||||+|||+|||++|+.++|+|+++||+++ ++++||++|+++++|||+|||+++|++++|+++++++|+++|
T Consensus 1 lygL~eRiVA~ESl~fLa~~l~~~~p~l~~lLp~~~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~vK 80 (234)
T PF10474_consen 1 LYGLAERIVAVESLSFLARQLESLRPYLESLLPPNKRDFLEQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANVK 80 (234)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHcC
Confidence 799999999999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred ccccccCccccchHHHHHHHHHHHHhhh----ccCCCChHHHHHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHH
Q 001240 961 WEVKELGLEHNGYVDLLLGEFKHYKTRL----AHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQ 1036 (1116)
Q Consensus 961 Wdvkei~~~hs~YVD~Ll~e~~~f~~rL----~~~~ip~~~~~~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~q 1036 (1116)
||+||+++|||+|||.|+++|+.|++|| ..++||+++++.||++++++++++||||||+|||||+||||+||||||
T Consensus 81 Wdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q 160 (234)
T PF10474_consen 81 WDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQLDFQ 160 (234)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999999999999999 567999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCCCCcchHHHHHHHHhhccChhhHHHHHHhCCCCCHHHHHHHHHHHhhhccCCHHHHHHHHHHHHh
Q 001240 1037 VLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIES 1113 (1116)
Q Consensus 1037 ~l~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~el~~Wi~~h~eYs~~ql~~Lv~~~~~~~~~~kK~r~~ll~~ie~ 1113 (1116)
+|+++||++++.+|+|+++|||+|||||||||+|+++||++|+|||++|+++||||++++ |||+|++||+.||+
T Consensus 161 ~~~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~e~~~W~~~h~eYs~~ql~~Lv~~~~~~---~kk~r~~ll~~ie~ 234 (234)
T PF10474_consen 161 QLQNKLEKLSGIRPIPNREYVENYIKAYYLPEEELEEWIRTHTEYSKKQLVGLVNCAAAS---KKKTRQRLLNAIEE 234 (234)
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHcCCHHHHHHHHHhCcccCHHHHHHHHHHHHHh---hHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999875 89999999999995
No 2
>KOG2939 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.6e-65 Score=563.91 Aligned_cols=493 Identities=31% Similarity=0.448 Sum_probs=384.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcHHhHhhhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001240 340 AEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNFQLENK 419 (1116)
Q Consensus 340 ~d~l~~~F~~~i~~~~~~vi~~~v~~~~~~~~~~~~~~y~dLc~~i~~d~~i~cl~~l~~~L~~lm~sy~~i~~wh~~~~ 419 (1116)
||||+++|+++||+++.+|+..+++... + ..+..|+++|.++..|++++|+..+|+.+|.++.+||++++||....
T Consensus 1 mdqLh~~fv~AIhttv~aVvlsy~dp~d-~---~~~~~y~~lCt~la~es~~p~~~s~~~l~~~v~is~~r~ve~hssEs 76 (502)
T KOG2939|consen 1 MDQLHTAFVEAIHTTVDAVVLSYCDPQD-G---GMLPEYKHLCTRLAHESDIPCLVSLCKLLWGVEISYYRLVEWHSSES 76 (502)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCChhc-c---cccccccchhhhccccCcchhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 5899999999999999999999987532 2 22556999999999999999999999999999999999999998211
Q ss_pred CCCCcccccccccccccccccCCCCCCCCCccccCCCCCCCCccCCCCCCCCCccCCCCCcCccccccccccchhhhhhh
Q 001240 420 TPNTKQKESDISMSSGEIHQINSDPGNSCNTVGVNGSTSGSVDKKSGSSSMPESATTSSLVDPVQSNLANVESYDQVEAI 499 (1116)
Q Consensus 420 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~ 499 (1116)
.
T Consensus 77 ~------------------------------------------------------------------------------- 77 (502)
T KOG2939|consen 77 S------------------------------------------------------------------------------- 77 (502)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hccCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCCCHHHHHHHHHHHHHHHHHHHhhhC
Q 001240 500 RDDGSAASSSGSPWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTVLIFSAAVCSTSIHQFLRNYEDLNVFILAGEAFCG 579 (1116)
Q Consensus 500 ~~~~~~~s~~~~~~~~l~~~~~~~V~~~L~~~~~~iw~~~q~rv~~lL~s~~l~~ls~~qFl~vl~~v~~Fi~~GE~fcG 579 (1116)
.++| .||+++|.+|+.++|++++.||..++.++++..+|++|||++++.+++|+.+||+|||
T Consensus 78 ----------~s~~--------~yIkKkl~ag~srv~~~~~rkv~~l~~srd~~s~K~~qfLqive~isrf~~vGeeFcg 139 (502)
T KOG2939|consen 78 ----------ESPW--------YYIKKKLDAGVSRVLQDLDRKVLILLLSRDFVSTKYDQFLQIVETISRFYYVGEEFCG 139 (502)
T ss_pred ----------cCch--------HHHHHHHHhhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhhhhhcc
Confidence 0223 4899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCch----hhhhhhhcccCCCCCcccccCCCcccccccC
Q 001240 580 IEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPADT----VQVVSFAGLVGDGAPLIVSSDSSSARVIHSN 655 (1116)
Q Consensus 580 ~~s~~Lr~~l~~Qs~~Yf~~fH~~rle~L~~~LEnE~W~~~pv~~----~q~~~f~~l~~~~~~li~~~~s~~~~~~~~~ 655 (1116)
.+++.|+++|++|+++||++||++||++|+||||||+|+.|||+. .|+++|+++.. .+.++.|+..+++.++
T Consensus 140 ~ese~l~Esi~k~se~YFkrYH~q~meel~MflenEsWtlcpv~sq~~ifql~ef~~m~~----sirrs~Spssr~~sss 215 (502)
T KOG2939|consen 140 FESEKLHESIKKQSEEYFKRYHRQRMEELNMFLENESWTLCPVKSQAEIFQLIEFASMPL----SIRRSASPSSRFPSSS 215 (502)
T ss_pred chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCccchhhhhhhhhcccchh----hhccccCCccCCCcCC
Confidence 999999999999999999999999999999999999999999997 34556655431 1234445556666655
Q ss_pred CCCCCCCCCCcCcccccccccCCCchhhhhhhccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCccch
Q 001240 656 KSANPTGATSRNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGEYDDYFRGDKVTPKSSDKSHMNGTNSVPEEENE 735 (1116)
Q Consensus 656 ~~~~~~~~~~~~~~f~~~~~~gNPF~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~d~~e 735 (1116)
+.++++++.+...++.-|++.+|||..+..+...+..++..++ .+...+++++.|...+..-+....|+....++++|+
T Consensus 216 s~s~ti~~~gns~gnpfel~s~hs~~~~s~~y~S~gyys~~se-ks~~qn~~~d~dv~ee~ird~~de~~g~ppse~~n~ 294 (502)
T KOG2939|consen 216 SPSNTIDPSGNSSGNPFELKSGHSFSAKSTHYRSDGYYSSISE-KSHEQNDSIDDDVVEEKIRDIKDENGGSPPSEDENE 294 (502)
T ss_pred CCCCccccccCCCCCchhHhhcCccccccchhccccccccccc-ccccccCCcCccccchhhcccccccCCCCCcccccH
Confidence 4444555444444444455555555554443333333333221 134445666677777666665556666667888999
Q ss_pred hhhhhhcccCCCCCCccCCCcccccCC-CCCCCCCcccccccHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 001240 736 DLLADFIDEDSQLPSRISKPNLWRNHS-SHWNDDEITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFH 814 (1116)
Q Consensus 736 el~~d~ide~~~~p~~~~~~~~~~~~~-~~~~~~~~~~ltnSsL~vLR~~gkYl~mm~~L~~ia~dv~~~i~qLfe~Y~y 814 (1116)
|+++++++| ++|.+...-...++.. ....+.-..+.+.++++.++.||+|.++|+.|..+..++++.++++|-|++|
T Consensus 295 ell~lr~ke--~l~r~nall~tnttlsv~r~i~~yl~~~~~~slc~le~~dky~rlv~~l~g~~a~f~kd~~~~f~~f~~ 372 (502)
T KOG2939|consen 295 ELLALRIKE--QLPRRNALLSTNTTLSVHRSINDYLTAQTGSSLCLLESMDKYARLVQKLEGVNAEFFKDICQLFGVFFY 372 (502)
T ss_pred HHHHHHhhh--hchhhccccccccccchhhhhcceeeecccchhhcccccchHHHHHHhhhccCcccCCCccccccceee
Confidence 999999988 4443322211111211 1233333447788888888899999999999999999999999999988888
Q ss_pred HHHHHhhccC-CCCCCCcccHHHHHHHHHhhhcccccccccccCCCCCCCCccccCCccCCCCCCCcCcccchhhhHHHH
Q 001240 815 YVFETFCQQN-GKGSTNPLNYRLKTALNKITQDCDEWIKPQLTSFSSSSPSSVANMDVTPTSPRSLSGASFGLKERCAAA 893 (1116)
Q Consensus 815 ~V~~~F~~~~-~~~~~~~~s~rLk~~L~rI~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lygL~eRiVA~ 893 (1116)
.+ -||... +++..++++.|+++ ..+++||++|||||+
T Consensus 373 f~--~~g~~~~~k~~pss~~~~~~a----------------------------------------~~d~lyg~ceriiav 410 (502)
T KOG2939|consen 373 FV--VFGQENTNKGGPSSFNHRLKA----------------------------------------CLDRLYGECERIIAV 410 (502)
T ss_pred ee--ecccccccCCCcccchhHHHh----------------------------------------hhHHHHHHhhhhhhh
Confidence 77 555432 33333444455554 335779999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHhcchhh--hHHHHHhhhhhhhhHHHHHHHHHHHHHHcChhhHHHHhhhccccccccCcccc
Q 001240 894 DTVSLVARMLHRSRTRLQSMLLQNT--AIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHN 971 (1116)
Q Consensus 894 ESl~fla~~l~~l~p~L~~~Lp~~~--~l~~Fy~qtv~~~~dLr~~iy~~va~~~l~~~~~~~~ia~vkWdvkei~~~hs 971 (1116)
++..++++||..++|+++.+|+... .+..+.. .|++..+|+|+|++.+++..++..|++||||+.++..+||
T Consensus 411 ~~~~s~~~ql~~~~~v~~~ll~~~~rp~l~s~ld------ad~~~L~~~c~asr~v~L~s~v~~~skvkwd~~~~~~~hs 484 (502)
T KOG2939|consen 411 HVSSSPSSQLAFPNTVHSLLLVTPARPLLTSGLD------ADSFSLKERCAASRTVSLVSRVLHKSKVKWDSMLMSRNHS 484 (502)
T ss_pred hccccHHhhhcchHHHHHhhccCCcchhhhhhhh------hhHHHHHHHhhhhhhhhHHHHHHHHhhhhhhHHhhhhccc
Confidence 9999999999999999999998654 6655444 8999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhh
Q 001240 972 GYVDLLLGEFKHYKTRL 988 (1116)
Q Consensus 972 ~YVD~Ll~e~~~f~~rL 988 (1116)
.|+|.|.+.++.|..++
T Consensus 485 ~y~D~l~q~~~~fs~~i 501 (502)
T KOG2939|consen 485 LYEDFLGQLVCTFSDLI 501 (502)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 99999999999999876
No 3
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=100.00 E-value=2.2e-56 Score=501.64 Aligned_cols=290 Identities=33% Similarity=0.555 Sum_probs=280.0
Q ss_pred hhhhhhhccccCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001240 125 VEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVAN 204 (1116)
Q Consensus 125 LesI~~~fF~~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~ 204 (1116)
|++||+.||+++|||++|+|+++|....+.+.++++++++.+|+|+|+++|+++|++||++||+||++|++|++++..+.
T Consensus 1 l~si~~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~ 80 (291)
T PF10475_consen 1 LESIPAIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEAL 80 (291)
T ss_pred CCCCcHhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999987434889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhhHhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 001240 205 VICMNGRRHITSSINEVSR-DLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSY 283 (1116)
Q Consensus 205 ~~~k~~R~~L~~a~~~vt~-sL~Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l 283 (1116)
++|+++|+.|+.+++.++. +|+|++++|||+++..+++.|+.|+++++++++|+.+|++|||++||++|.+|++++++|
T Consensus 81 ~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 81 VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999875 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 284 SQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIV 363 (1116)
Q Consensus 284 ~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i~~~~~~vi~~~v 363 (1116)
+||+|+++|+++|++++..|+++||..|.++|.+|||++|.+|++||.+||+++.++|+++++|+++|++++++||++++
T Consensus 161 ~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~ 240 (291)
T PF10475_consen 161 KGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYV 240 (291)
T ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhccCcHHhHhhhCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 364 LEDHEVQMLNSRLTYSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMNF 414 (1116)
Q Consensus 364 ~~~~~~~~~~~~~~y~dLc~~i~~d~~i~cl~~l~~~L~~lm~sy~~i~~w 414 (1116)
....+...+..+++|++||.+||+|+|++||+++|+++|++|++||.|++|
T Consensus 241 ~~~~~~~~~~~~~~y~~lC~~v~~~~~~~cl~~l~~~l~~im~sy~~~~~w 291 (291)
T PF10475_consen 241 EQSESSEERSSKMSYKDLCKQVPSDQFIPCLLELLEVLWDIMCSYYQMLQW 291 (291)
T ss_pred HhccccccccccCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 876555556678999999999999999999999999999999999999999
No 4
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-39 Score=382.35 Aligned_cols=654 Identities=17% Similarity=0.229 Sum_probs=430.3
Q ss_pred chhhhhhhhhhhccccCC---CchhhhhccCCCC-------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001240 120 PQVQVVEDLEEDFYEEDF---DPVSHILEHIPPE-------------ENDLEYFEKQAALRLAQLDRVSELLSRQVMEHH 183 (1116)
Q Consensus 120 ~~~eiLesI~~~fF~~~F---Dp~~yeL~kLp~~-------------~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~ 183 (1116)
-+.+-|++||.+||+++| ||..| .++.+. ..++.....+++++.+|||+|+.+|.++|..++
T Consensus 190 ~~~~~l~sVPsiffk~dF~Lddp~TF--~~V~~~id~t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La~eIs~~S 267 (951)
T KOG2115|consen 190 GDATDLSSVPSIFFKSDFQLDDPATF--HSVLPAIDLTLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLAQEISKRS 267 (951)
T ss_pred cchhhHHhCcchhcCCcccCCCcchH--hhhccccccchhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356779999999999999 88877 666331 113455667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 001240 184 EVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEV-SRDLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVE 262 (1116)
Q Consensus 184 ~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~v-t~sL~Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLe 262 (1116)
++||++|++++.|++++..+...++..|++|+..+..+ ..+..|+...-+|+++.+++++|+.|.+++++++++|.+++
T Consensus 268 dsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~ 347 (951)
T KOG2115|consen 268 DSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLS 347 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 99999999999999999999999999999999998765 46899999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHH--hcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhc----ccchhhHhHHHHHHhhhhh
Q 001240 263 EGNYCKAFQVLSEYLQLLD--SYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQE----FKEEAYINVVDAYALIGDV 336 (1116)
Q Consensus 263 e~dY~~AI~l~~e~q~vl~--~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~----Fd~~~Y~~l~eAy~LLgk~ 336 (1116)
++||++||++|...|.+|. ++.+++||++|.+++.+++..|-.++...|.+.... +...--..+++-..|..-.
T Consensus 348 ~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~~~~Dlg~~~~~~ls~~lee~~L~~~v 427 (951)
T KOG2115|consen 348 TQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFSTYSKSDLGRKLTLQLSILLEEDRLSSLV 427 (951)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHhHHHHHH
Confidence 9999999999999999995 899999999999999999999999999999886653 4433335555554444444
Q ss_pred hhHHHH--H---HHHHHHHHHHHHHHHHHHHHHhh------hh-------hhhhhccCcHHhHhhhCCc--chhHHHHHH
Q 001240 337 SGLAEK--I---QSFFMQEVISETHSVLKSIVLED------HE-------VQMLNSRLTYSDLCERIPE--SKFRQCLLK 396 (1116)
Q Consensus 337 ~~~~d~--l---~~~F~~~i~~~~~~vi~~~v~~~------~~-------~~~~~~~~~y~dLc~~i~~--d~~i~cl~~ 396 (1116)
.+++.+ + ...+.+.+...++.+++..+.+. ++ -..+.+.+.+.+-....+. ..+.. +.
T Consensus 428 lgllr~~klpsf~~~~~d~l~~~~k~iikq~i~d~l~~~~~~d~d~S~~el~e~~~~~~~~~~i~~~~~~~~~~~~--~~ 505 (951)
T KOG2115|consen 428 LGLLRTRKLPSFLEGYRDKLIETFKNIIKQKITDLLVRLNRCDEDTSVFELGEQKRILELPSWIKLLPTSNAHADF--LQ 505 (951)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHhhhhHHHHhhHHHHHhcchhhhhhHH--HH
Confidence 444322 1 22222333333333333222211 11 1112233334443333322 11221 22
Q ss_pred HHHHHHHHH---------HHHHHHHHHHhhhcCCCCcccc--cccccccccccccCCCCCCCCCccccCCCCCCCCccCC
Q 001240 397 TLAVLFKLI---------CSYHEIMNFQLENKTPNTKQKE--SDISMSSGEIHQINSDPGNSCNTVGVNGSTSGSVDKKS 465 (1116)
Q Consensus 397 l~~~L~~lm---------~sy~~i~~wh~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (1116)
..+++.++. .+-..+++|....++....... .++.. .+ ...++.+...
T Consensus 506 rs~a~~nl~s~~~~l~R~~s~~~i~e~~~~~~dsdtavg~~~~~~~~----------~~---------~~lldss~~~-- 564 (951)
T KOG2115|consen 506 RSEALLNLSSVLDKLSRLSSEQTIAEQISMAKDSDTAVGETLQDIYF----------SG---------GLLLDSSLSK-- 564 (951)
T ss_pred hHHHHhhhhhhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHhc----------CC---------ccccccchhh--
Confidence 333333321 2233456666555543100000 00000 00 0001100000
Q ss_pred CCCCCCCccCCCCCcCccccccccccchhhhhhhhccCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 466 GSSSMPESATTSSLVDPVQSNLANVESYDQVEAIRDDGSAASSSGSPWYYLRKDATTFVSQTLRRGCKNLWQLTTSRVTV 545 (1116)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~s~~~~~~~~l~~~~~~~V~~~L~~~~~~iw~~~q~rv~~ 545 (1116)
..+..+|.. ++.+ ....+...+..+...+++.+|.|+++
T Consensus 565 ----------~~s~~s~l~-------------------------g~~~------~~~~l~~~l~~li~~~~~vch~r~~k 603 (951)
T KOG2115|consen 565 ----------EASLASPLP-------------------------GQHN------EQYHLLRDLQTLIAEASDVCHQRTAK 603 (951)
T ss_pred ----------hhhcCCCCC-------------------------CchH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0011 11235667778899999999999999
Q ss_pred HhccCc--cCCCCHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 001240 546 LIFSAA--VCSTSIHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHRQNIYALKMVLEKETWMKLPAD 623 (1116)
Q Consensus 546 lL~s~~--l~~ls~~qFl~vl~~v~~Fi~~GE~fcG~~s~~Lr~~l~~Qs~~Yf~~fH~~rle~L~~~LEnE~W~~~pv~ 623 (1116)
+|..|+ ..++++.+|++++.++..|+..||..||..+.+|+++|+.|+.+|+++||..|+.+|+.+||+|.|++.|||
T Consensus 604 il~~Ra~~~~sl~~~ef~~l~~L~~~Fi~~~esicG~~~ssl~~tl~sQa~~y~~~fh~~rk~kL~~~lD~E~W~~~dV~ 683 (951)
T KOG2115|consen 604 ILAVRALLLESLRPQEFIKLYALVVIFIQETESICGRKSSSLLGTLQSQAKDYANRFHSKRKQKLKLLLDQELWKAIDVP 683 (951)
T ss_pred HHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcccCCCC
Confidence 999997 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCCCCcccccCCCcccccccCCCCCCCCCCCcCcccccccccCCCchhhhhhhccCCCCCCCCCCCCCC
Q 001240 624 TVQVVSFAGLVGDGAPLIVSSDSSSARVIHSNKSANPTGATSRNSGFSHWLKSGNPFSQKLIYISKGLNSPQLNGAIDGE 703 (1116)
Q Consensus 624 ~~q~~~f~~l~~~~~~li~~~~s~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~gNPF~~~~~~~~~~~~~~~~~g~~~~~ 703 (1116)
+ +|..++.. ++.. .|+.. | +.. .++
T Consensus 684 ~----e~Q~iv~~----l~~~----~rl~s-----------------------g-----k~~--~~~------------- 708 (951)
T KOG2115|consen 684 S----EFQSIVNR----LVEW----TRLLS-----------------------G-----KKA--DPE------------- 708 (951)
T ss_pred H----HHHHHHhh----hhhh----hhccc-----------------------c-----ccc--chh-------------
Confidence 8 47665522 1110 01100 0 000 000
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhcccCCCCCCccCCCcccccCCCCCCCCCcccccccHHHHHHH
Q 001240 704 YDDYFRGDKVTPKSSDKSHMNGTNSVPEEENEDLLADFIDEDSQLPSRISKPNLWRNHSSHWNDDEITSQTGSSLCLLRS 783 (1116)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~d~~eel~~d~ide~~~~p~~~~~~~~~~~~~~~~~~~~~~~ltnSsL~vLR~ 783 (1116)
..+++.....| -+|. -+++ ...-.+.+|++.+++.
T Consensus 709 -~~s~~s~~~~p-------~~~~--------------iv~g-----------------------~q~y~~v~ssi~li~~ 743 (951)
T KOG2115|consen 709 -HRSHHSNVSNP-------CTGL--------------IVSG-----------------------KQIYPLVGSSITLIEG 743 (951)
T ss_pred -hccccccccCC-------ceeE--------------Eecc-----------------------cccchhhhhHHHHHHH
Confidence 00111100000 0000 0000 0112467899999999
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccHHHHHHHHHhhhcccccccccccCCCCCCC
Q 001240 784 MDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDCDEWIKPQLTSFSSSSP 863 (1116)
Q Consensus 784 ~gkYl~mm~~L~~ia~dv~~~i~qLfe~Y~y~V~~~F~~~~~~~~~~~~s~rLk~~L~rI~~~~~~~i~~~~~~~~~~~~ 863 (1116)
...|-++.+.+|.++++.-..+.+|+.++.-.+|++.. |+|.. +...||+ |..
T Consensus 744 l~~yc~~~~~~p~~s~e~~~r~~dllk~fNsrs~Qlil---Gagal--~vvGlkt----i~~------------------ 796 (951)
T KOG2115|consen 744 LSDYCELAAHFPSLSPEFNTRVVDLLKTFNSRSCQLIL---GAGAL--RVVGLKT----ITV------------------ 796 (951)
T ss_pred HHhHHHHHhhccccChhhhhhHHHHHHHhcchHHHHHh---cccce--EEeecee----eee------------------
Confidence 99999999999999999999999999999999999888 55522 1122222 221
Q ss_pred CccccCCccCCCCCCCcCcccchhhhHHHHhHHHHHHHHHHHhHHHHHHhcchhh-hHHHHHhhhhhhhhHHHHHHHHHH
Q 001240 864 SSVANMDVTPTSPRSLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNT-AIEDFYVNLVDSVPDLIEHIHKTT 942 (1116)
Q Consensus 864 ~~~~~~~~~p~~~~~~~~~lygL~eRiVA~ESl~fla~~l~~l~p~L~~~Lp~~~-~l~~Fy~qtv~~~~dLr~~iy~~v 942 (1116)
.++ ..|..+|-.+...++.++-|++..+..-. +.. |.+.|||.+.
T Consensus 797 -----------------~nl------aLasr~l~Lvl~~lp~i~e~~~~~~n~~~~l~s-----------dy~~hv~eI~ 842 (951)
T KOG2115|consen 797 -----------------KNL------ALASRTLQLVLALLPMIKEYMDRVLNLFSILES-----------DYEDHVYEIL 842 (951)
T ss_pred -----------------cch------HhhHhHHHHHHHHHHHHHHHHHHHhcchHhHhH-----------HHHHHHHHHH
Confidence 111 36677778888999999988888754332 333 3344555333
Q ss_pred HHH---HcChhhHHHHhhhccccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHH
Q 001240 943 ARL---LLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVE 1007 (1116)
Q Consensus 943 a~~---~l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~~~i~ 1007 (1116)
+-. +...-...-.|..++|.+ +|+-.-.+.+++..+++.+. +.+|..-...+.-.+.+
T Consensus 843 ~k~~s~~~~~v~~~l~~~~l~~~i------pS~~f~~ic~~~~k~h~~l~-~i~pr~qi~~~~~~v~r 903 (951)
T KOG2115|consen 843 AKFNSIMMERVTQCLPMWSLKKPI------PSPSFRDICKSLLKLHEALV-GIVPRDQIELIFLDVNR 903 (951)
T ss_pred HHHHHHHHHHHHhhccHhhhCCCC------CChhHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHh
Confidence 321 111111122344444444 34447788888888888885 45565555555544433
No 5
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.8e-20 Score=210.72 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=190.5
Q ss_pred cCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 135 EDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHI 214 (1116)
Q Consensus 135 ~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L 214 (1116)
++|||+.| |.|||++++ +.++.+.+++|.+|++.++++|+++||||||+|+.|+++|++|++++..+ ...|..|
T Consensus 31 ahFDpEvy-ldkL~REcp-LaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~m----e~eMd~L 104 (636)
T KOG2346|consen 31 AHFDPEVY-LDKLPRECP-LAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGM----EQEMDGL 104 (636)
T ss_pred CCCCHHHH-HHHhhhcCC-HHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhh----cchhhhH
Confidence 58999999 999999998 99999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHHHHhhhh-hhhHh---hHhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcch
Q 001240 215 TSSINEVSR-DLIVN---TNSKKK-QALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAI 289 (1116)
Q Consensus 215 ~~a~~~vt~-sL~Il---~~~Rkr-q~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~~~c~ 289 (1116)
...|..|++ +-+|. ..+|-+ ..|....+.|++++++++++.+|+++...+.|.+|+....+++..+..|+|.+.|
T Consensus 105 ~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~~psf 184 (636)
T KOG2346|consen 105 EEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDGRPSF 184 (636)
T ss_pred HHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcCCCCcH
Confidence 999887764 44443 333433 6777788999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 001240 290 QEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISE 354 (1116)
Q Consensus 290 ~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i~~~ 354 (1116)
++.....++++.+++.+|...|.+ +...-....+|..+|..+....+.++..++...+..
T Consensus 185 q~~~~~seei~~rl~~qL~~rlr~-----~~sga~~raEAv~LLl~lg~p~del~~~lL~~~eqs 244 (636)
T KOG2346|consen 185 QEDDVPSEEIRLRLVAQLGTKLRS-----DSSGAQARAEAVVLLLQLGVPVDELKAKLLEKLEQS 244 (636)
T ss_pred HHhccchHHHHHHHHHHHHHHhcc-----CCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 999999999999999999999887 666677888999999999999999999998877665
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=98.95 E-value=4.1e-08 Score=103.66 Aligned_cols=143 Identities=16% Similarity=0.192 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhhhh-hHhhHhHHHHHHHHHHHHHH
Q 001240 173 ELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVI------CMNGRRHITSSINEVSRDL-IVNTNSKKKQALLDMLPILT 245 (1116)
Q Consensus 173 ~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~------~k~~R~~L~~a~~~vt~sL-~Il~~~Rkrq~L~~ll~~L~ 245 (1116)
+.|..+|.+|+++|+.+.++|..+..++...... +......|..+.......+ -|+..+.+-.++..++..|+
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999877443 3334444433333222222 33344455599999999999
Q ss_pred HHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC-CCcchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 001240 246 ELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYS-QLSAIQEMSRGVEVWLGRTLQKLDSLLLGVC 315 (1116)
Q Consensus 246 ~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~-~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c 315 (1116)
+.++++++|.+|++.+..|||..|+..|..++.+...+. +.+.|+.+-.+++.++..+.+.|...|.+..
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~ 152 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP 152 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999998 9999999999999999999999999988743
No 7
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.93 E-value=7.9e-06 Score=95.85 Aligned_cols=213 Identities=15% Similarity=0.205 Sum_probs=151.7
Q ss_pred cCCCchhhhhccC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 135 EDFDPVSHILEHI-PPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRH 213 (1116)
Q Consensus 135 ~~FDp~~yeL~kL-p~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~ 213 (1116)
++|||+.| |+.+ |.+. ++..++.....+..++..++..|.+.|.+....=-.+-..+.+.+..+......+...|..
T Consensus 2 ~dfdpv~~-in~lfp~e~-SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~k 79 (383)
T PF04100_consen 2 PDFDPVDY-INELFPDEQ-SLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSK 79 (383)
T ss_pred CCCCHHHH-HHHhCCChH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999 7666 6554 4888998888888899999999999999877444444445555555666666666666666
Q ss_pred HHHHHHhhhh-hhhHhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---cCCCcch
Q 001240 214 ITSSINEVSR-DLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDS---YSQLSAI 289 (1116)
Q Consensus 214 L~~a~~~vt~-sL~Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~---l~~~~c~ 289 (1116)
=..+...|+. .=.|-+.-.-|.||......|+.|+-|...-..|+.++..++|.++..++.-..++++. |+.++-|
T Consensus 80 A~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I 159 (383)
T PF04100_consen 80 AEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQI 159 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHH
Confidence 6666555554 44555666778899999999999999999999999999999999999999999999855 5555556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhc---ccch-hhHhHHHHHHhhhhhh-hHHHHHHHHHHH
Q 001240 290 QEMSRGVEVWLGRTLQKLDSLLLGVCQE---FKEE-AYINVVDAYALIGDVS-GLAEKIQSFFMQ 349 (1116)
Q Consensus 290 ~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~---Fd~~-~Y~~l~eAy~LLgk~~-~~~d~l~~~F~~ 349 (1116)
..|..++..+-..+..++...|..+-.. -++. ....+.+|...+.-++ ..-+++...|+.
T Consensus 160 ~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~ 224 (383)
T PF04100_consen 160 AELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCN 224 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 6677777777777777777777654211 1111 2345556655544422 344555555543
No 8
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=0.0006 Score=80.07 Aligned_cols=203 Identities=14% Similarity=0.044 Sum_probs=121.9
Q ss_pred hhhccccCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 129 EEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICM 208 (1116)
Q Consensus 129 ~~~fF~~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k 208 (1116)
+..|..++||...| +.+..... +++ .++.++.-|+..+...|-.+|-+.|..|+.=-...=.|++.+..+.+-..
T Consensus 25 k~eFmkedFdve~f-~s~~R~~v-~le---tLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~ 99 (705)
T KOG2307|consen 25 KTEFMKEDFDVERF-MSLARQKV-DLE---TLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLN 99 (705)
T ss_pred hhhhccccCCHHHH-HHHHhccC-CHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHH
Confidence 34566788998888 66654333 244 45566788999999999999999999999888888888888888877788
Q ss_pred HHHHHHHHHHHhhhhhhhHhhHhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHhc----CCHHHHHHHHHHHHHHHHh-
Q 001240 209 NGRRHITSSINEVSRDLIVNTNSKKK-QALLDMLPILTELCHACDMQLALESLVEE----GNYCKAFQVLSEYLQLLDS- 282 (1116)
Q Consensus 209 ~~R~~L~~a~~~vt~sL~Il~~~Rkr-q~L~~ll~~L~~Ik~l~~~q~~Lq~lLee----~dY~~AI~l~~e~q~vl~~- 282 (1116)
..|..+...+..|..++++++.++-. ....+....|..+..+...-.+|+++|.. ..-.+|..|=.-+.. ++.
T Consensus 100 qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAle-lnql 178 (705)
T KOG2307|consen 100 QLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALE-LNQL 178 (705)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHH-HHHH
Confidence 88888888777777777777533222 33333333333333444445556665542 222233332000100 111
Q ss_pred -cCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhc---ccchhhHhHHHHHHhhhhhh
Q 001240 283 -YSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQE---FKEEAYINVVDAYALIGDVS 337 (1116)
Q Consensus 283 -l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~---Fd~~~Y~~l~eAy~LLgk~~ 337 (1116)
+..-+|...+..+-++-...+..+|++.|..+|.+ =++........+|..|..+.
T Consensus 179 kf~a~h~k~~l~p~~e~ria~~~~~L~qsl~~lf~eglqsa~~~l~nclriYatld~t~ 237 (705)
T KOG2307|consen 179 KFHASHLKGSLFPHSEERIAAEKIILSQSLAVLFAEGLQSAAGDLQNCLRIYATLDLTE 237 (705)
T ss_pred HHHHHHhhcccCcchhhHHhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhhch
Confidence 11223444444444444444455555555544432 25556667777888777755
No 9
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=98.38 E-value=1.2e-05 Score=81.65 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=114.4
Q ss_pred hhhhhhhhhh---ccccCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001240 122 VQVVEDLEED---FYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEK 198 (1116)
Q Consensus 122 ~eiLesI~~~---fF~~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~ 198 (1116)
+++|..|+.. +..++|+|+..-|.-+.... .+ .......+....+.++..|...|-+||..|-+++.+...+..
T Consensus 3 ~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss--~g-~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~ 79 (142)
T PF04048_consen 3 DEVLNEIKDEWPFMLTDDFNPVELALSLLDDSS--VG-RAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILS 79 (142)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCC--cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887 66889999999998885432 22 333334456677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-hhhHhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001240 199 DLKVANVICMNGRRHITSSINEVSR-DLIVNTNSKKKQALLDMLPILTELCHACDMQLALESL 260 (1116)
Q Consensus 199 dL~~a~~~~k~~R~~L~~a~~~vt~-sL~Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~l 260 (1116)
.+..+...+...|..|..++..+.. .-.+-....+.+.+..++++|..|..+.++|.+|..|
T Consensus 80 ~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 80 SISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 9999999999999999999988864 5566677778899999999999999999999998753
No 10
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.023 Score=70.56 Aligned_cols=210 Identities=13% Similarity=0.140 Sum_probs=153.1
Q ss_pred cchhhhHHHHhHHHHHHHHHHHhHHHHHHh--c------chhh------hHHHHHhhhhh-hhhHHHHHHHHHHH--HHH
Q 001240 884 FGLKERCAAADTVSLVARMLHRSRTRLQSM--L------LQNT------AIEDFYVNLVD-SVPDLIEHIHKTTA--RLL 946 (1116)
Q Consensus 884 ygL~eRiVA~ESl~fla~~l~~l~p~L~~~--L------p~~~------~l~~Fy~qtv~-~~~dLr~~iy~~va--~~~ 946 (1116)
=+|++-+.--||+.+.+...+..-..+..+ + ++.. ..++||.-... ++..+...-++|.. +.-
T Consensus 717 ~~lK~~a~m~ES~~w~a~r~rs~~~~l~~~~ll~~n~~~~~~~~~dl~~l~dd~~~s~~ee~~~~fq~la~~cLLlLhlE 796 (982)
T KOG3691|consen 717 SDLKQLANMHESLEWFADRARSGFDFLPIDNLLGNNPALMKGYLTDLIELYDDFYKSAYEELADSFQRLAFDCLLLLHLE 796 (982)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhhccccchhhhhcCCccccccccccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676667788888888866554433221 1 2221 45555544333 33333333333332 111
Q ss_pred cChhhH------HHHhhhccccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001240 947 LHIDGY------VDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRV 1020 (1116)
Q Consensus 947 l~~~~~------~~~ia~vkWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~~~~Lvegfs~v 1020 (1116)
+++-.+ ..-=...-|.-++ ..++-+=|-.|.+++.++...|. ..+|+--...|++.+-+.+...|+.|+-.+
T Consensus 797 VRv~Cfh~l~~~s~~~n~~i~~~~~-s~e~D~~V~aL~k~l~~~e~klk-~~L~e~k~~yIFeGL~hL~s~~LI~~a~~i 874 (982)
T KOG3691|consen 797 VRVQCFHYLNPLSKLRNTSIVNRDV-SGEPDPSVVALNKDLSTTEEKLK-ACLNEWKRRYIFEGLGHLVSSILISGAQYI 874 (982)
T ss_pred HHHHHHhhcchhhccCCceeecccc-cCCCCHHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111111 1111234465555 66888999999999999999997 667888889999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhhccccCCCCCCcchHHHHHHHHhhccChhhHHHHHHhCCC-CCHHHHHHHHHHHhhh
Q 001240 1021 KRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHPE-YTKSQILGLVNLVAAM 1096 (1116)
Q Consensus 1021 kKCs~eGRalMqlD~q~l~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~el~~Wi~~h~e-Ys~~ql~~Lv~~~~~~ 1096 (1116)
+..+..|--.|..-+-.+++.|..++..+ .-+.+..-+|---||-+++++.+.+.+.+- ||--++..|+.+.+..
T Consensus 875 ~~ln~~~ikkMcRNv~~lQQ~Lsnit~~r-evdld~ar~fy~ll~nt~deile~v~d~~~qfse~e~~qllrls~rS 950 (982)
T KOG3691|consen 875 ERLNEGGIKKMCRNVSALQQILSNITESR-EVDLDKARRFYELLQNTADEILEHVIDARKQFSEPELKQLLRLSYRS 950 (982)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhcCHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877 677888888888888889999999999874 9999999999988764
No 11
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=98.30 E-value=4.9e-07 Score=90.56 Aligned_cols=129 Identities=16% Similarity=0.270 Sum_probs=21.5
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccHHHHHHHHHhhhcc
Q 001240 768 DEITSQTGSSLCLLRSMDKYARLMQKLDIVNVEFFKGICQLFEVFFHYVFETFCQQNGKGSTNPLNYRLKTALNKITQDC 847 (1116)
Q Consensus 768 ~~~~~ltnSsL~vLR~~gkYl~mm~~L~~ia~dv~~~i~qLfe~Y~y~V~~~F~~~~~~~~~~~~s~rLk~~L~rI~~~~ 847 (1116)
++.+++++|+|.+++.+.+|++++..+|.++.|+...+.+||..|+-.++++.. |+|. .-.+.|++|+.+
T Consensus 2 ~e~f~vv~s~l~ll~~l~~Y~~~~~~~P~~a~di~~~l~elLk~fNSr~~qlVL---GAGA------~~~agLK~IT~K- 71 (135)
T PF07928_consen 2 NEKFVVVGSALLLLKMLSDYLQLASNFPSLAPDILSRLLELLKLFNSRCCQLVL---GAGA------MRSAGLKTITAK- 71 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceecHHHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHh---ccch------hhccCcCcchHH-
Confidence 346789999999999999999999999999999999999999999999999988 5552 222345557642
Q ss_pred cccccccccCCCCCCCCccccCCccCCCCCCCcCcccchhhhHHHHhHHHHHHHHHHHhHHHHHHhcchhh-hHHHHHhh
Q 001240 848 DEWIKPQLTSFSSSSPSSVANMDVTPTSPRSLSGASFGLKERCAAADTVSLVARMLHRSRTRLQSMLLQNT-AIEDFYVN 926 (1116)
Q Consensus 848 ~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lygL~eRiVA~ESl~fla~~l~~l~p~L~~~Lp~~~-~l~~Fy~q 926 (1116)
+-.+|.++|.|++..+..++.++++.+|+.. .+..-|++
T Consensus 72 ----------------------------------------hLALasq~L~~~~~lip~i~~~~~~~~~~~~~~~~~~fd~ 111 (135)
T PF07928_consen 72 ----------------------------------------HLALASQSLSFIISLIPYIREFFERHLPSKQQSLLREFDK 111 (135)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 2348999999999999999999999988776 55555788
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 001240 927 LVDSVPDLIEHIHKTTARLL 946 (1116)
Q Consensus 927 tv~~~~dLr~~iy~~va~~~ 946 (1116)
+..-..|.+.-||..++..+
T Consensus 112 v~~dy~~H~~eI~~Klv~Im 131 (135)
T PF07928_consen 112 VKRDYQDHQNEIFSKLVSIM 131 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776654
No 12
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.14 E-value=0.076 Score=68.20 Aligned_cols=215 Identities=15% Similarity=0.188 Sum_probs=146.3
Q ss_pred ccccCCCchhhhhccC---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHH
Q 001240 132 FYEEDFDPVSHILEHI---PPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMV----KGMNLVRELEKDLKVAN 204 (1116)
Q Consensus 132 fF~~~FDp~~yeL~kL---p~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~----~am~~I~eL~~dL~~a~ 204 (1116)
|=+++||+..++=..+ ++..+ ....+.....+..+|+.....++..|-+....-+ ..+..|..|+.+....-
T Consensus 5 f~~~~FD~~~WIN~~~~~~~~~~~-~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 5 FSDDDFDVKAWINAALKSRSKDEA-LEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hCcCCCCHHHHHHHHhhccCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4478899999842222 22222 4455555556677788888888888777777766 55666666777766665
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHh-hHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 001240 205 VICMNGRRHITSSINEVSRDLIVN-TNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSY 283 (1116)
Q Consensus 205 ~~~k~~R~~L~~a~~~vt~sL~Il-~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l 283 (1116)
..++..++.++.+......++..+ +..+-|+++....+.|+.=...-.+-..+..+++.|||.++-+-+.+.++-|.-+
T Consensus 84 ~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l 163 (766)
T PF10191_consen 84 EQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVL 163 (766)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 556666666655443333344444 6778888888888888888888888899999999999999999999999999989
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001240 284 SQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEV 351 (1116)
Q Consensus 284 ~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i 351 (1116)
++.+=+.+=..+++..-.+++..+...|....+.=+.+.......-|.-+|+ .+++..+|..+-
T Consensus 164 ~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R----~~~l~~~Y~~~r 227 (766)
T PF10191_consen 164 QDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGR----EPQLEQYYCKCR 227 (766)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCC----HHHHHHHHHHHH
Confidence 9988888777777777667776666666543333333343444444444444 445566665443
No 13
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.053 Score=66.25 Aligned_cols=189 Identities=17% Similarity=0.177 Sum_probs=131.0
Q ss_pred hhhhhhhhhccccCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001240 123 QVVEDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKV 202 (1116)
Q Consensus 123 eiLesI~~~fF~~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~ 202 (1116)
+++.-|.+.|=.++|..+.|+=+-+|.+-+ +..++.+..++...++.++..|...|..+.|.=-.|=....+.+.-+..
T Consensus 5 ~v~~~I~q~~~t~~f~~v~~in~lfp~eqS-L~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~e 83 (793)
T KOG2180|consen 5 NVLYDINQMIPTPEFNFVEYINELFPAEQS-LTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEE 83 (793)
T ss_pred hHHHHHHHhcCCcchhHHHHHHHhccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH
Confidence 344455555555899998884444476654 7888887777888899999999999999887766554445554555444
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hhhHhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001240 203 ANVICMNGRRHITSSINEVSR-DLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLD 281 (1116)
Q Consensus 203 a~~~~k~~R~~L~~a~~~vt~-sL~Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~ 281 (1116)
....++..+..=.+....|.. .=.|-+.---|+||..-+..|+.++-|...-..|+.+++.++|.+|+..+.-.-++++
T Consensus 84 L~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~ 163 (793)
T KOG2180|consen 84 LFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLN 163 (793)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHH
Confidence 544455555544444444432 2233344456778888888899998888888999999999999999999998888886
Q ss_pred h---cCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 001240 282 S---YSQLSAIQEMSRGVEVWLGRTLQKLDSLLL 312 (1116)
Q Consensus 282 ~---l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~ 312 (1116)
. |+.+.=|..|++++.++-..+..++-..|.
T Consensus 164 ~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~ 197 (793)
T KOG2180|consen 164 HFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFK 197 (793)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 455555666666776665555555544443
No 14
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.13 E-value=0.0084 Score=74.96 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHh----h
Q 001240 154 LEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVN----T 229 (1116)
Q Consensus 154 l~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~sL~Il----~ 229 (1116)
.+.+...-..+...+..+..++...|.++|..|...+.+..++..+.+.....+....+.. +.+.+...+... +
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~--~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSE--IENEIQPQLRDAAEELQ 86 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHH
Confidence 3444444455667788899999999999999999999999999888777744443222220 122222222221 2
Q ss_pred HhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-----CCCcchhhhhHHHHHHHHHH
Q 001240 230 NSKKK-QALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSY-----SQLSAIQEMSRGVEVWLGRT 303 (1116)
Q Consensus 230 ~~Rkr-q~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l-----~~~~c~~~L~~~Lqe~l~~i 303 (1116)
..++. .....+++.|+.|+.+.+.=..++..+.+|+|..|++.+.+.+..+... ....|++.|..++......+
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 22222 5555666777777777777778889999999999999999999999664 34689999999999999999
Q ss_pred HHHHHHHHHhhhh-c---c------------------cchh--hHhHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001240 304 LQKLDSLLLGVCQ-E---F------------------KEEA--YINVVDAYALIGDVSGLAEKIQSFFMQEV 351 (1116)
Q Consensus 304 ~~~Ld~~L~~~c~-~---F------------------d~~~--Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i 351 (1116)
...|...+.+... + + ++.. -..+..|...||.+..-+++++...++.|
T Consensus 167 ~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~i 238 (593)
T PF06248_consen 167 QYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHI 238 (593)
T ss_pred HHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999998876543 1 2 0111 36777888888888777777777666544
No 15
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=98.09 E-value=0.0031 Score=73.24 Aligned_cols=194 Identities=12% Similarity=0.161 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHhhHhH
Q 001240 154 LEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSR-DLIVNTNSK 232 (1116)
Q Consensus 154 l~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~-sL~Il~~~R 232 (1116)
++.+.+.-+.+..+...+...++.+-..||..|++.-+.+..+..++........+.++.|....+.+.. .-..-....
T Consensus 9 l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~ 88 (338)
T PF04124_consen 9 LESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISE 88 (338)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443344566788899999999999999999999999999999988888888888888776655432 111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 001240 233 KKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLL 312 (1116)
Q Consensus 233 krq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~ 312 (1116)
.|.....++.....+..+.++|.-++.++..|.|.+|+++....++....|...+-++.+..+.+..+..+...|-..|.
T Consensus 89 ~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~ 168 (338)
T PF04124_consen 89 ERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQMLSQLINQLR 168 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 24444566677777888899999999999999999999999999999999999999999988887766666665555554
Q ss_pred hhhhcccchhhHhHHHHHHhhhhhhhHH-HHHHHHHHHHHHH
Q 001240 313 GVCQEFKEEAYINVVDAYALIGDVSGLA-EKIQSFFMQEVIS 353 (1116)
Q Consensus 313 ~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~-d~l~~~F~~~i~~ 353 (1116)
. |-+-.........|.++...- .++...|+.+...
T Consensus 169 ~------~l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~ 204 (338)
T PF04124_consen 169 T------PLKLPACIKTVGYLRRLPVLTESELRLKFLQSRDS 204 (338)
T ss_pred C------cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2 222233333333333332111 2366777766433
No 16
>KOG2939 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=6.9e-05 Score=85.88 Aligned_cols=139 Identities=37% Similarity=0.465 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhhccCC-CChHHH--HHHHHHHHHHHHHHHHHhhh------h---cccCCHHH--HHHHHHHHHHHHh
Q 001240 975 DLLLGEFKHYKTRLAHGG-IHKEVQ--DLLLEYGVEIVAETLIEGLS------R---VKRCTDEG--RALMSLDLQVLIN 1040 (1116)
Q Consensus 975 D~Ll~e~~~f~~rL~~~~-ip~~~~--~~lw~~~i~~~~~~Lvegfs------~---vkKCs~eG--RalMqlD~q~l~~ 1040 (1116)
+....+++++-++|+... +|..+. ..+|+-.+.+ ..+||+-+ . +|||+.+| |-+|-+|.+..+.
T Consensus 29 ~~~~~~y~~lCt~la~es~~p~~~s~~~l~~~v~is~--~r~ve~hssEs~~s~~~yIkKkl~ag~srv~~~~~rkv~~l 106 (502)
T KOG2939|consen 29 GGMLPEYKHLCTRLAHESDIPCLVSLCKLLWGVEISY--YRLVEWHSSESSESPWYYIKKKLDAGVSRVLQDLDRKVLIL 106 (502)
T ss_pred ccccccccchhhhccccCcchhHHHHHHHHHHHHHHH--HHHHhhcccccccCchHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556677888999999754 775544 7778776655 88999988 5 89999999 8889999999988
Q ss_pred hccc-cCCCCCCcchHHHHHHHHhhccC------hhhHHHHHH--hCCCCCH---HHHHHHHHHHhhhccCC---HHHHH
Q 001240 1041 GLQH-FVPVNVKPKLQIVETFIKAYYLP------ETEYVHWAA--AHPEYTK---SQILGLVNLVAAMKGWK---RKTRL 1105 (1116)
Q Consensus 1041 ~le~-l~~~~~~p~~~~Ve~YIKAyYl~------e~el~~Wi~--~h~eYs~---~ql~~Lv~~~~~~~~~~---kK~r~ 1105 (1116)
.+.+ ++..+.-+-++.||+.+++||++ +.+-.+|.. .|.||.+ .|-+..++.......|+ .|.+.
T Consensus 107 ~~srd~~s~K~~qfLqive~isrf~~vGeeFcg~ese~l~Esi~k~se~YFkrYH~q~meel~MflenEsWtlcpv~sq~ 186 (502)
T KOG2939|consen 107 LLSRDFVSTKYDQFLQIVETISRFYYVGEEFCGFESEKLHESIKKQSEEYFKRYHRQRMEELNMFLENESWTLCPVKSQA 186 (502)
T ss_pred HhccccchhhHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccccCCccchh
Confidence 8877 88888989999999999999998 678888866 4667998 89999999999888898 89999
Q ss_pred HHHHHHHhcC
Q 001240 1106 EILEKIESAG 1115 (1116)
Q Consensus 1106 ~ll~~ie~~~ 1115 (1116)
.+++.+|-+|
T Consensus 187 ~ifql~ef~~ 196 (502)
T KOG2939|consen 187 EIFQLIEFAS 196 (502)
T ss_pred hhhhhhhccc
Confidence 9999999554
No 17
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=97.56 E-value=0.0006 Score=63.10 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=61.8
Q ss_pred ccCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 134 EEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRR 212 (1116)
Q Consensus 134 ~~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~ 212 (1116)
.++|||..| ++.+....+ ...+......+...++..++.|.+.|+.||..|+.+.+.|..|+.++......+.....
T Consensus 3 ~~~fd~~~~-~~~~l~~~s-~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 3 SENFDVDEY-FKDLLKNSS-IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred CCcCCHHHH-HHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999 554434433 78888888888899999999999999999999999999999999998877444433333
No 18
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.56 E-value=0.0026 Score=63.91 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=82.2
Q ss_pred hhccccCCCchhhhhccCCC--C--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001240 130 EDFYEEDFDPVSHILEHIPP--E--ENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANV 205 (1116)
Q Consensus 130 ~~fF~~~FDp~~yeL~kLp~--~--~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~ 205 (1116)
+.|.+|+|||..| -+.+-. + .++...+....+++..-++.|+++|.++|.+||...+.-...+.+++.-+...-.
T Consensus 1 e~fl~~dFd~~~f-an~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~ 79 (132)
T PF10392_consen 1 EAFLSPDFDPVQF-ANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRS 79 (132)
T ss_pred CCCCCCCCCHHHH-HHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3588999999999 444422 1 1111223333344566789999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHhhHhHHH-HHHHHHHHHHHHHHHHHh
Q 001240 206 ICMNGRRHITSSINEVSRDLIVNTNSKKK-QALLDMLPILTELCHACD 252 (1116)
Q Consensus 206 ~~k~~R~~L~~a~~~vt~sL~Il~~~Rkr-q~L~~ll~~L~~Ik~l~~ 252 (1116)
.+...+....+.+.+|...-.-+.....+ .++-.+.++|+.+..+..
T Consensus 80 ~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~ 127 (132)
T PF10392_consen 80 SVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777765533333333333 555555555555544333
No 19
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.93 Score=55.91 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=124.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh--h-h-hhh
Q 001240 152 NDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSS-INEV--S-R-DLI 226 (1116)
Q Consensus 152 ~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a-~~~v--t-~-sL~ 226 (1116)
+++.+++.+-+.+..+-..|+++|..++.+...---.-|..++-+...|... ..-=+.|..+ .+-. . + +-+
T Consensus 31 t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v----~~da~el~~~i~nt~~lAe~Vs~k 106 (773)
T KOG0412|consen 31 TDISQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTV----EGDAKELTDAIKNTCVLAETVSGK 106 (773)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhh----hccHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888877777788889999999888874432212333333333332222 2222222222 2211 1 1 344
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHH----HH-h-cCCC---cchhhhhHHHH
Q 001240 227 VNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQL----LD-S-YSQL---SAIQEMSRGVE 297 (1116)
Q Consensus 227 Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~v----l~-~-l~~~---~c~~~L~~~Lq 297 (1116)
|-+.-+-|.++.+.+.-...|+.+..--.-++..|+..||..|-+.+.+.... +. . .++. +.+.+=...|+
T Consensus 107 Vr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~ 186 (773)
T KOG0412|consen 107 VRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLK 186 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHH
Confidence 44555566666666666666666655556777899999999999987776443 21 1 2222 33444444566
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 298 VWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSI 362 (1116)
Q Consensus 298 e~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i~~~~~~vi~~~ 362 (1116)
++-+++..-+...|.+-.+.=|-..-+.-+.-|.|+|+..+=++...-++.+.|.+.++..+...
T Consensus 187 ~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~l~n~ 251 (773)
T KOG0412|consen 187 EAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIASKARKNLANV 251 (773)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555555554444444444555566789999888888888888888888777665543
No 20
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.48 E-value=0.0021 Score=64.51 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=9.5
Q ss_pred hhccccCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 130 EDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMN 209 (1116)
Q Consensus 130 ~~fF~~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~ 209 (1116)
..|..++|||..| |...... ..++.++.++..+...+...|..+|-++|..|+.=-+.+..+.+.+.....-+..
T Consensus 6 ~~F~~~~Fd~d~F-l~~~~~~----~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~ 80 (133)
T PF06148_consen 6 EEFTKPDFDVDEF-LSSNRRY----VSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQ 80 (133)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred cccCCCCCCHHHH-HHHccCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4566889999999 4433222 2345566678889999999999999999999996444555444444444444444
Q ss_pred HHHHHHHHHHhhh
Q 001240 210 GRRHITSSINEVS 222 (1116)
Q Consensus 210 ~R~~L~~a~~~vt 222 (1116)
.|+.+...++.+.
T Consensus 81 ~~~~v~~~~~~l~ 93 (133)
T PF06148_consen 81 FREEVESVRDELD 93 (133)
T ss_dssp HHHHHHHHHHS-S
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554443
No 21
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=2.8 Score=51.03 Aligned_cols=150 Identities=14% Similarity=0.181 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhh-------
Q 001240 154 LEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSI---NEVSR------- 223 (1116)
Q Consensus 154 l~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~---~~vt~------- 223 (1116)
++++.+..+.+-.+...++.+++++-..||..|+.+=+.++.+...+..+ |+++..-- ...++
T Consensus 33 ~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~-------~~~~~~l~l~~~~L~s~~~~f~~ 105 (581)
T KOG2069|consen 33 LEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRS-------RHDLKELSLQLPELTSPCKRFQD 105 (581)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh-------hhhhHHHHHhhHHhhhHHHHHHH
Confidence 77888777777788889999999999999999999777788877777776 33332211 11111
Q ss_pred -hhhHhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHH
Q 001240 224 -DLIVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGR 302 (1116)
Q Consensus 224 -sL~Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~ 302 (1116)
.-.|.. .|.--..++.....+..+.+++..|..+++.|.|.+|.++...+-+.-+.+..++.++++.++...++..
T Consensus 106 ~~~~i~e---~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~pvi~~i~~~v~~tv~~ 182 (581)
T KOG2069|consen 106 FAEEISE---HRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIPVIQEIATEVEQTVQK 182 (581)
T ss_pred HHHHhhH---hHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 112222 1222234566677888889999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHh
Q 001240 303 TLQKLDSLLLG 313 (1116)
Q Consensus 303 i~~~Ld~~L~~ 313 (1116)
+.++|-..|..
T Consensus 183 ll~qL~~~l~~ 193 (581)
T KOG2069|consen 183 LLEQLIQQLRT 193 (581)
T ss_pred HHHHHHHHHhh
Confidence 77777666654
No 22
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.72 Score=57.95 Aligned_cols=189 Identities=14% Similarity=0.203 Sum_probs=124.8
Q ss_pred hhhhhhccccCCCchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HH
Q 001240 126 EDLEEDFYEEDFDPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKV-AN 204 (1116)
Q Consensus 126 esI~~~fF~~~FDp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~-a~ 204 (1116)
.++| ++.++|+|.-|.++.= .+.+ .+.+..-.+-+..+..--.+.=-..|-.|-+.||.+.+++..|+..|++ ..
T Consensus 162 ~~~D--l~se~Fspkw~L~enH-~~ts-~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~ 237 (934)
T KOG2347|consen 162 TSVD--LRSEHFSPKWFLLENH-QDTS-FEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEE 237 (934)
T ss_pred cccc--cccccCChhHHHHhhh-hhcc-HHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhcccc
Confidence 3455 6788999999955432 2222 3333332222333333322222345778889999999999999999988 11
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhh----HhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 001240 205 VICMNGRRHITSSINEVS-RDLI----VNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQL 279 (1116)
Q Consensus 205 ~~~k~~R~~L~~a~~~vt-~sL~----Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~v 279 (1116)
..=.++=.+|-..++.++ ..-. |+..+-+-.....++..|.+.++|+-++..++.-++.|+|.-++.-|..+...
T Consensus 238 ~~~gs~t~~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl 317 (934)
T KOG2347|consen 238 DPHGSGTTKLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSL 317 (934)
T ss_pred CccchHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHh
Confidence 111222233444433322 2211 12222222555688899999999999999999999999999999999998887
Q ss_pred HHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001240 280 LDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFK 319 (1116)
Q Consensus 280 l~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd 319 (1116)
... .+++-|+.+-..++.-|..+.+.|-..|.+....|.
T Consensus 318 ~~~-t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~ 356 (934)
T KOG2347|consen 318 FGK-TEVNLFKKVLEEVEKRMQSFKETLYRKLIDTPITFE 356 (934)
T ss_pred hcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 654 578889998888888888888888888877555544
No 23
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.71 E-value=0.11 Score=59.89 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHHH-cChhhHHHHhhhccccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 001240 930 SVPDLIEHIHKTTARLL-LHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEI 1008 (1116)
Q Consensus 930 ~~~dLr~~iy~~va~~~-l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~ 1008 (1116)
.+.+.|+.-...+...+ -.++.++ .+++..|.-.+...++|.|+..++.=++....-.- ..+|..+...+--.+...
T Consensus 137 ~f~~~r~~Ae~~I~~lv~~KIDe~l-ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l-~~LP~~v~~~~~~~a~~h 214 (311)
T PF04091_consen 137 MFKDARKAAEKRIFELVNSKIDEFL-ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTL-TNLPPSVKQLVYFSACDH 214 (311)
T ss_dssp -S---TTHHHHHHHHHHHHHHHHHH-TT--TT--------S--HHHHHHHHHHHHHHHTTT-TTSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 33444444444444333 2356666 78899999999999999999999988877664321 578999998888888888
Q ss_pred HHHHHHHhh--hhcccCCHHHHHHHHHHHHHHHhhcccc
Q 001240 1009 VAETLIEGL--SRVKRCTDEGRALMSLDLQVLINGLQHF 1045 (1116)
Q Consensus 1009 ~~~~Lvegf--s~vkKCs~eGRalMqlD~q~l~~~le~l 1045 (1116)
+.+.|++-+ -.||+-|..|-..|-+|++++-.-.+.+
T Consensus 215 is~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~ 253 (311)
T PF04091_consen 215 ISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSL 253 (311)
T ss_dssp HHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 888999888 6799999999999999999998888877
No 24
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=6.3 Score=46.61 Aligned_cols=179 Identities=17% Similarity=0.104 Sum_probs=120.6
Q ss_pred ccCCCchhhhh---ccC-CCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHH
Q 001240 134 EEDFDPVSHIL---EHI-PPEE-NDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVK----GMNLVRELEKDLKVAN 204 (1116)
Q Consensus 134 ~~~FDp~~yeL---~kL-p~~~-~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~----am~~I~eL~~dL~~a~ 204 (1116)
++.|||..++= ++. |.+. +|.+..++.-..+...+++-...+..-+-+.+..-+. +...+-.+++|.....
T Consensus 8 dekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq 87 (828)
T KOG4182|consen 8 DEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADAHRLQ 87 (828)
T ss_pred ccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHH
Confidence 56799887732 222 3222 2344555544455566777777777777777766554 4455566778877777
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hHhhHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 001240 205 VICMNGRRHITSSINEVSRDL-IVNTNSKKKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSY 283 (1116)
Q Consensus 205 ~~~k~~R~~L~~a~~~vt~sL-~Il~~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l 283 (1116)
..+...|..|+.+......++ .+.+...++|++..-.+.|..-.-+.++-..+..-.+.||.++|-+-+..-|+-+.--
T Consensus 88 ~kma~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkcL~A~ 167 (828)
T KOG4182|consen 88 EKMAAILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKCLHAQ 167 (828)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Confidence 777777777777765443333 3335667778898888888888888888899999999999999888766666665544
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 001240 284 SQLSAIQEMSRGVEVWLGRTLQKLDSLLL 312 (1116)
Q Consensus 284 ~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~ 312 (1116)
.++.-+.+...++++.-.+++......+.
T Consensus 168 ~elaefAe~qkQlE~~edRLEAlaqPrlt 196 (828)
T KOG4182|consen 168 EELAEFAERQKQLEDFEDRLEALAQPRLT 196 (828)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 55566777788888876666655444444
No 25
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.40 E-value=40 Score=42.90 Aligned_cols=120 Identities=12% Similarity=0.167 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHhhHhHHHHHHHHHHHHHHH
Q 001240 168 LDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEV-SRDLIVNTNSKKKQALLDMLPILTE 246 (1116)
Q Consensus 168 ld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~v-t~sL~Il~~~Rkrq~L~~ll~~L~~ 246 (1116)
++--++.|.++.-.||+.|+.+++.+..++.|++.....+...=++|+.+.+.+ ...-.+++.+....++....++|+.
T Consensus 57 ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~ 136 (800)
T KOG2176|consen 57 IRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTL 136 (800)
T ss_pred HHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444678889999999999999999999999999998888888888888886654 3344555666777889999999998
Q ss_pred HHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHH-HHhcCCCc
Q 001240 247 LCHACDMQLALESLVEEGNYCKAFQVLSEYLQL-LDSYSQLS 287 (1116)
Q Consensus 247 Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~v-l~~l~~~~ 287 (1116)
--.+.++=.++++.+.++.|..|++.+.+--.+ +..++++.
T Consensus 137 Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL~~~~~~~ 178 (800)
T KOG2176|consen 137 CLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYLPRVSNFR 178 (800)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcccch
Confidence 888899999999999999999999998887666 46666544
No 26
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=91.34 E-value=4.1 Score=50.81 Aligned_cols=217 Identities=17% Similarity=0.197 Sum_probs=142.9
Q ss_pred hhhhHHH-HhHHHHHHHHHHHhHHHHHHhcchhh--hHHHHHhhhhhhhhHHHHHHHHHHHHH-HcChhhHHHHhhhccc
Q 001240 886 LKERCAA-ADTVSLVARMLHRSRTRLQSMLLQNT--AIEDFYVNLVDSVPDLIEHIHKTTARL-LLHIDGYVDRISNAKW 961 (1116)
Q Consensus 886 L~eRiVA-~ESl~fla~~l~~l~p~L~~~Lp~~~--~l~~Fy~qtv~~~~dLr~~iy~~va~~-~l~~~~~~~~ia~vkW 961 (1116)
+.+.++| +....-.+...+.+...+...+.+.. .+..-+.++.+.+.++.......+... +.|++..++.+-.-+|
T Consensus 314 ~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W 393 (566)
T PF06046_consen 314 YLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKW 393 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGG
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcC
Confidence 3355444 44555555666666677777766443 555668889999999999988888866 4699999999999999
Q ss_pred cccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhcc-cC-----CHHHHHHHHHHH
Q 001240 962 EVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVK-RC-----TDEGRALMSLDL 1035 (1116)
Q Consensus 962 dvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~~~~Lvegfs~vk-KC-----s~eGRalMqlD~ 1035 (1116)
--. ..|+.++.=+..|..-+.+ .+.++....+.+.+...+....|.++-+-| +| ..++-..|..|.
T Consensus 394 ~~~-------~~~~~I~~Ti~dY~~d~~~-~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~ 465 (566)
T PF06046_consen 394 YSG-------EAVDTICATIEDYLQDFQH-YLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDA 465 (566)
T ss_dssp CTS--------HHHHHHHHHHHHHHHHCC-CS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHH
T ss_pred cCc-------chHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHH
Confidence 766 7899999888888876653 366777777777777666666666655533 45 566779999999
Q ss_pred HHHHhhccccCCC-CCCcchHHHHHHHHhhccC-hh----hHHHHHHhCCCCCHHHHHHHHHHHhhhccCCHHHHHHHHH
Q 001240 1036 QVLINGLQHFVPV-NVKPKLQIVETFIKAYYLP-ET----EYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILE 1109 (1116)
Q Consensus 1036 q~l~~~le~l~~~-~~~p~~~~Ve~YIKAyYl~-e~----el~~Wi~~h~eYs~~ql~~Lv~~~~~~~~~~kK~r~~ll~ 1109 (1116)
..+..-+.++... .........+..+.-.=+. .+ ++...++.+|..+..|+.+|+.+= ...+|..++.+++
T Consensus 466 ~~l~~~F~~~~~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R---~D~~r~~~~~il~ 542 (566)
T PF06046_consen 466 EQLKSFFSKLGSKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALR---GDLSRSEVKEILE 542 (566)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT----TT--HHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc---cCCCHHHHHHHHH
Confidence 9999999998821 1112222233222222021 11 566667778999999999998652 2378999999998
Q ss_pred HHHh
Q 001240 1110 KIES 1113 (1116)
Q Consensus 1110 ~ie~ 1113 (1116)
.+.+
T Consensus 543 ~~~~ 546 (566)
T PF06046_consen 543 ILRE 546 (566)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 27
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.56 E-value=55 Score=40.92 Aligned_cols=121 Identities=18% Similarity=0.076 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhHHH-HHHH
Q 001240 160 QAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKK-QALL 238 (1116)
Q Consensus 160 ~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~sL~Il~~~Rkr-q~L~ 238 (1116)
+.+++.++|+-.+..|-.+|..+|.+..+.-..+.-....+....+.+...+..+..+++.+..--+++..+.-. .+|.
T Consensus 76 q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~vl~rLh 155 (797)
T KOG2211|consen 76 QCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTMVLTRLH 155 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 344467788889999999999999999988888888888899999999999999999998887655554433333 6677
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Q 001240 239 DMLPILTELCHACDMQLALESLVEEGNY--CKAFQVLSEYLQLL 280 (1116)
Q Consensus 239 ~ll~~L~~Ik~l~~~q~~Lq~lLee~dY--~~AI~l~~e~q~vl 280 (1116)
..-+.|+..-++.++-.+|+.+...++- -.|.+...+-...+
T Consensus 156 va~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneLd~l~ 199 (797)
T KOG2211|consen 156 VAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNELDSLL 199 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHHHHHH
Confidence 7777788887788888899888766543 34555444444444
No 28
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.10 E-value=4.9 Score=49.36 Aligned_cols=143 Identities=12% Similarity=0.189 Sum_probs=90.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHc-ChhhHHHHhh-hccccccccC-----ccccchHHHHHHHHHHHHhhhccCCCCh
Q 001240 923 FYVNLVDSVPDLIEHIHKTTARLLL-HIDGYVDRIS-NAKWEVKELG-----LEHNGYVDLLLGEFKHYKTRLAHGGIHK 995 (1116)
Q Consensus 923 Fy~qtv~~~~dLr~~iy~~va~~~l-~~~~~~~~ia-~vkWdvkei~-----~~hs~YVD~Ll~e~~~f~~rL~~~~ip~ 995 (1116)
.|..++.....++.-+-..++..+. .++.-+..-. ..+|+..+.. ..+|+-....+.-+......|... ||+
T Consensus 299 iFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~-L~~ 377 (494)
T PF04437_consen 299 IFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERS-LPP 377 (494)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS---H
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHH-cCH
Confidence 5666666666776666666665543 2333222222 3789877544 567887777777777776666644 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHhhccccCCCCCCcchHH--HHHHHHhhccChh
Q 001240 996 EVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQI--VETFIKAYYLPET 1069 (1116)
Q Consensus 996 ~~~~~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~q~l~~~le~l~~~~~~p~~~~--Ve~YIKAyYl~e~ 1069 (1116)
.....||+.++..+.+.|.+..-...+=|..|=++++.|++.+..-+...++ .|...| +..-++---+|.+
T Consensus 378 ~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~---~p~~~f~~l~E~~~LL~L~~~ 450 (494)
T PF04437_consen 378 ADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYTP---RPEAFFKRLREACKLLNLPYG 450 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TTS---GG-HHHHHHHHHHHHHGGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhcc---CHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999987777899999999999999999988888553 344333 5566666666544
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.11 E-value=99 Score=38.86 Aligned_cols=145 Identities=19% Similarity=0.151 Sum_probs=84.1
Q ss_pred CchhhhhccCCC-CCC--chHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 138 DPVSHILEHIPP-EEN--DLEYFEKQAALRLAQLDRVSELLSRQ---V-----MEHHEVMVKGMNLVRELEKDLKVANVI 206 (1116)
Q Consensus 138 Dp~~yeL~kLp~-~~~--dl~~l~~~~~~~~~qld~V~~~Ls~~---V-----~en~~~F~~am~~I~eL~~dL~~a~~~ 206 (1116)
-|+..+|.++-. +.. ....++.. ...|-+++...+..- + +-+.-.|++|-..+.++...+..+-..
T Consensus 44 ~pv~~el~kvk~l~l~Ges~~~f~~w---~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~ 120 (569)
T PRK04778 44 LPVNDELEKVKKLNLTGQSEEKFEEW---RQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEED 120 (569)
T ss_pred CCHHHHHHHHhcCCCCcccHHHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777632 111 23344433 345566555555332 2 223456899999999999999999888
Q ss_pred HHHHHHHHHHHHHhhh-hhhhHhhHhHHHHHHH-----------HHHHHHH-HHHHHHhhHHHHHHHHhcCCHHHHHHHH
Q 001240 207 CMNGRRHITSSINEVS-RDLIVNTNSKKKQALL-----------DMLPILT-ELCHACDMQLALESLVEEGNYCKAFQVL 273 (1116)
Q Consensus 207 ~k~~R~~L~~a~~~vt-~sL~Il~~~Rkrq~L~-----------~ll~~L~-~Ik~l~~~q~~Lq~lLee~dY~~AI~l~ 273 (1116)
++..+..|......=. ....|-+...+-+.+. ...+.|. .|..+-..=....++-+.|||.+|-+.+
T Consensus 121 ~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l 200 (569)
T PRK04778 121 IEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREIL 200 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888888877653322 2333332221111111 1122222 2333333334566788899999999999
Q ss_pred HHHHHHHHhcCC
Q 001240 274 SEYLQLLDSYSQ 285 (1116)
Q Consensus 274 ~e~q~vl~~l~~ 285 (1116)
.+.+.-+..+..
T Consensus 201 ~~l~~~~~~l~~ 212 (569)
T PRK04778 201 DQLEEELAALEQ 212 (569)
T ss_pred HHHHHHHHHHHH
Confidence 888887765543
No 30
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=83.42 E-value=5.3 Score=39.83 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=42.9
Q ss_pred hhhccccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHh
Q 001240 956 ISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEG 1016 (1116)
Q Consensus 956 ia~vkWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~~~~Lveg 1016 (1116)
-+.-+|--|++++.||+||+.+++-+..|...- ...++.+....+...++.-+.+...+-
T Consensus 19 p~~YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~-~~~~~~~~~~~~~~~v~~~v~~~y~~~ 78 (125)
T PF12022_consen 19 PRQYRMTNKPVPTKPSPYVSSILRPLKSFLEEY-SSYLSPEIIEEWLQKVITEVTERYYEI 78 (125)
T ss_pred HHHhhccCCCCCCCccHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999998887 345566666555555554444433333
No 31
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=83.29 E-value=1.4e+02 Score=37.75 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHhhHhH
Q 001240 154 LEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSIN-EVSRDLIVNTNSK 232 (1116)
Q Consensus 154 l~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~-~vt~sL~Il~~~R 232 (1116)
.++++..+......+.-=-+.|-++|-++|-..+.+-++|+.|+.--......|++.|.+.++... .+...-..-+...
T Consensus 19 vsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~tp~raeqnp 98 (863)
T KOG2033|consen 19 VSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAKTPGRAEQNP 98 (863)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcchhhcCc
Confidence 345555444444444444566788899999999999999998776665555556666655554432 2221111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 001240 233 KKQALLDMLPILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSY 283 (1116)
Q Consensus 233 krq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l 283 (1116)
.+++ ++.+.-.||-|.+++..|=..|+++.|-.|.++|.-|+.+=+.+
T Consensus 99 ~~e~---~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~l 146 (863)
T KOG2033|consen 99 AGEH---LYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQL 146 (863)
T ss_pred hhhH---HHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHH
Confidence 3344 45556678889999999999999999999999988887775533
No 32
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=68.49 E-value=3e+02 Score=34.05 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhHhhHhHHH-----HHHHHHHHHHHHHHHHH
Q 001240 184 EVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEV-------SRDLIVNTNSKKK-----QALLDMLPILTELCHAC 251 (1116)
Q Consensus 184 ~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~v-------t~sL~Il~~~Rkr-----q~L~~ll~~L~~Ik~l~ 251 (1116)
=.|.+|-..|..+...|..+-..++..|+.|+.....= ...+..-++-|+. .++..+++.|. +.|-
T Consensus 97 frF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lE--k~Le 174 (570)
T COG4477 97 FRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELE--KKLE 174 (570)
T ss_pred hhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH--HHHH
Confidence 34788888888888888888777777787776553221 1112211221211 22222222222 1222
Q ss_pred hhHHHHH---HHHhcCCHHHHHHHHHHHHHHHHhcCCC
Q 001240 252 DMQLALE---SLVEEGNYCKAFQVLSEYLQLLDSYSQL 286 (1116)
Q Consensus 252 ~~q~~Lq---~lLee~dY~~AI~l~~e~q~vl~~l~~~ 286 (1116)
..++.++ .+=+.|||.+|-..+.++..-+..++++
T Consensus 175 ~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~ 212 (570)
T COG4477 175 NIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSI 212 (570)
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH
Confidence 2333333 3446899999999999988887665544
No 33
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.08 E-value=2.9e+02 Score=33.39 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh-----HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCH
Q 001240 192 LVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNT-----NSKKKQALLDMLPILTELCHACDMQLALESLVEEGNY 266 (1116)
Q Consensus 192 ~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~sL~Il~-----~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY 266 (1116)
.||+.+.|...++..-+..++.+......+.+++.|.- .-++-......++.|..|...+ ..-++.+...|.+
T Consensus 397 niRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc--~ei~E~i~~tg~~ 474 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNC--MEILEMIRETGAL 474 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH--HHHHHHHHHcchH
Confidence 57788888888766666666666666555656666652 2222244445556666553221 1223445557777
Q ss_pred HHHHHHHHH
Q 001240 267 CKAFQVLSE 275 (1116)
Q Consensus 267 ~~AI~l~~e 275 (1116)
-.++..+..
T Consensus 475 ~revrdlE~ 483 (521)
T KOG1937|consen 475 KREVRDLES 483 (521)
T ss_pred HHHHHHHHH
Confidence 777766543
No 34
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.89 E-value=2.2e+02 Score=33.35 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHHHHHHhcC-----CCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcccch----hhHhHHHHHHhh
Q 001240 263 EGNYCKAFQVLSEYLQLLDSYS-----QLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEE----AYINVVDAYALI 333 (1116)
Q Consensus 263 e~dY~~AI~l~~e~q~vl~~l~-----~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd~~----~Y~~l~eAy~LL 333 (1116)
+.+...|.-.+.+++.++..++ .++++..-|.-+..+ +..+|.-|++. +-..=-.|=.+|
T Consensus 81 ~~~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V-----------~~aV~iLl~~~~~~~k~~~W~~ak~~l 149 (344)
T PF12777_consen 81 EEELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLV-----------MEAVCILLGPKGKLPKDTSWESAKKLL 149 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHH-----------HHHHHHHTT-S-SEE---HHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHH-----------HHHHhhHHhccccccccccHHHHHHHH
Confidence 4566778888888888875543 334444444333333 33444444321 001111233455
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 334 GDVSGLAEKIQSFFMQEVISETHSVLKSIV 363 (1116)
Q Consensus 334 gk~~~~~d~l~~~F~~~i~~~~~~vi~~~v 363 (1116)
++.....+.|..+=.+.|...+..-|+.|+
T Consensus 150 ~~~~~Fl~~L~~fd~~~i~~~~~~~l~~~~ 179 (344)
T PF12777_consen 150 SDSDNFLQRLKNFDKDNIPEATIKKLKKYL 179 (344)
T ss_dssp CSSTTHHHHHHHS-GGG--HHHHHHHHCTT
T ss_pred HhHHHHHHHHHhhccccccHHHHHHHHHHh
Confidence 554455566555445555444444444444
No 35
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=53.59 E-value=1.1e+02 Score=30.67 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=56.2
Q ss_pred HHHHHhHHHHHHhcchhhhHHHHHhhhhhhhhHHHHHHHH--HHHHHHcChhhHHHHhhhccccccccCccccchHHHHH
Q 001240 901 RMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHK--TTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLL 978 (1116)
Q Consensus 901 ~~l~~l~p~L~~~Lp~~~~l~~Fy~qtv~~~~dLr~~iy~--~va~~~l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll 978 (1116)
..++.++|.++...+. +++.||...... |+++..+=. .+.+.-=....+...+-...+| ..|+....
T Consensus 18 ~~l~~~~~~~~~~~~~--i~~~FY~~l~~~-p~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~d--------~~y~~~~~ 86 (147)
T cd01068 18 SLLKALRPVIEANADE--LVDRFYDHLRRT-PETAAFLGDESVVERLKSTQRRHWVELFSGVYD--------EAYIAQRV 86 (147)
T ss_pred HHHHHhHHHHHHHHHH--HHHHHHHHHhcC-hHHHHHhCCchHHHHHHHHHHHHHHHHhCCCCC--------HHHHHHHH
Confidence 4456666777776654 899999986555 888766531 1111111122233333333333 34555442
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhh
Q 001240 979 GEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSR 1019 (1116)
Q Consensus 979 ~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~~~~Lvegfs~ 1019 (1116)
.+..-+. .++||++....-+..+...+.+++.+.+..
T Consensus 87 -~iG~~H~---~igl~~~~~~~~~~~~~~~l~~~l~~~~~~ 123 (147)
T cd01068 87 -RIGEVHA---RIGLEPKWYLGGYAVLLELLIGALRESILS 123 (147)
T ss_pred -HHHHHHH---HcCCCCcchHHHHHHHHHHHHHHHHHHccC
Confidence 1222222 357888777666666666666666666543
No 36
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=52.15 E-value=5.8e+02 Score=32.09 Aligned_cols=167 Identities=16% Similarity=0.117 Sum_probs=92.8
Q ss_pred CchhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 138 DPVSHILEHIPPEENDLEYFEKQAALRLAQLDRVSELLSRQ---V-----MEHHEVMVKGMNLVRELEKDLKVANVICMN 209 (1116)
Q Consensus 138 Dp~~yeL~kLp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~---V-----~en~~~F~~am~~I~eL~~dL~~a~~~~k~ 209 (1116)
-|+..+|.|+-.-.........-++-+..|-+++..++... + +-+.-.|+++-..+.+++..+..+-..++.
T Consensus 40 ~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~ 119 (560)
T PF06160_consen 40 LPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKE 119 (560)
T ss_pred CCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777763211112232333333445556665554332 2 123445889999999999999999888888
Q ss_pred HHHHHHHHHHhh-hhhhhHhhHhHHHHHHH-----------HHHHHHH-HHHHHHhhHHHHHHHHhcCCHHHHHHHHHHH
Q 001240 210 GRRHITSSINEV-SRDLIVNTNSKKKQALL-----------DMLPILT-ELCHACDMQLALESLVEEGNYCKAFQVLSEY 276 (1116)
Q Consensus 210 ~R~~L~~a~~~v-t~sL~Il~~~Rkrq~L~-----------~ll~~L~-~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~ 276 (1116)
.+..|......= .....|.+...+-+.+. ...+.|. .|..+-..=....++.+.|||.+|=+.+.+.
T Consensus 120 i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l 199 (560)
T PF06160_consen 120 ILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKL 199 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888887764332 22333332221111111 1112221 2333333334666788899999999999888
Q ss_pred HHHHHhcCCC---------cchhhhhHHHHHHHHHHH
Q 001240 277 LQLLDSYSQL---------SAIQEMSRGVEVWLGRTL 304 (1116)
Q Consensus 277 q~vl~~l~~~---------~c~~~L~~~Lqe~l~~i~ 304 (1116)
+.-+..+..+ .|-..+|.+|+++..-..
T Consensus 200 ~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~ 236 (560)
T PF06160_consen 200 KEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYR 236 (560)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8777554432 234455555555443333
No 37
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=52.01 E-value=6.8e+02 Score=32.83 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHhhccccCCCCCCcchHHHHHHHHhhccChhhHHHHHHh
Q 001240 1002 LEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAA 1077 (1116)
Q Consensus 1002 w~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~q~l~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~el~~Wi~~ 1077 (1116)
...+.+-+.++++|...+|..-|.-|+.++.-|+..|.|-|+.|. ..|.|....+..-+|+ |.+++.+-++.
T Consensus 681 l~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~nVl~aLg-~~~~~~L~~~~~ll~~---~~~~~~~~~~~ 752 (766)
T PF10191_consen 681 LGKVARATCALYLEQILEIPELSESGAKQLATDIDYLSNVLSALG-LSPPPNLQQLVTLLKA---PPDQYAQVAKG 752 (766)
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcC---CHHHHHHHHhc
Confidence 345677788999999999999999999999999999999999997 4466777777666664 78888888873
No 38
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=46.23 E-value=2.5e+02 Score=36.20 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhc-ccchhhHhHHHHHHhhhhhhhHHH
Q 001240 263 EGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQE-FKEEAYINVVDAYALIGDVSGLAE 341 (1116)
Q Consensus 263 e~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~-Fd~~~Y~~l~eAy~LLgk~~~~~d 341 (1116)
-+.|..|+.-|.+-..+..+...|.|-.+|...+-..+.==.+.-...+...+++ -+...|..-.-||..+||..+++.
T Consensus 877 l~~ye~ALghl~E~~n~~~Ev~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~g 956 (1243)
T COG5290 877 LSIYESALGHLNEDLNVIREVMKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHG 956 (1243)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999988888776664322211111122222222 233456777889999999888776
Q ss_pred HHHH
Q 001240 342 KIQS 345 (1116)
Q Consensus 342 ~l~~ 345 (1116)
..++
T Consensus 957 ay~s 960 (1243)
T COG5290 957 AYDS 960 (1243)
T ss_pred HHHH
Confidence 6554
No 39
>PF03036 Perilipin: Perilipin family; InterPro: IPR004279 The perilipin family includes lipid droplet-associated protein (perilipin) and adipose differentiation-related protein (adipophilin). Perilipin is a modulator of adipocyte lipid metabolism and adipophilinis involved in the development and maintenance of adipose tissue. Other proteins belong to this group include TIP47, a cargo selection device for mannose 6-phosphate receptor trafficking [].; PDB: 1SZI_A.
Probab=44.85 E-value=3.4e+02 Score=32.53 Aligned_cols=62 Identities=6% Similarity=0.154 Sum_probs=36.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhhhh--cccchhhHhHHHHHHhhhhhhhHHHHHHHHHH
Q 001240 287 SAIQEMSRGVEVWLGRTLQKLDSLLLGVCQ--EFKEEAYINVVDAYALIGDVSGLAEKIQSFFM 348 (1116)
Q Consensus 287 ~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~--~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~ 348 (1116)
+|+++||..+++....+...++..-...+. .|..-.-..+..+-..+.+..+.++.+..+.+
T Consensus 325 s~vqgLP~~lq~~~~~~~~~~~el~~~f~~a~s~~dl~~~~L~~sr~~l~~~~~sLd~l~d~lv 388 (391)
T PF03036_consen 325 SSVQGLPSNLQDQAQQARHSAEELYSSFSSASSFQDLPAEVLAQSREQLQKARESLDELMDYLV 388 (391)
T ss_dssp HTTTTS-HHHHHHHHHHHHHHHHHHHHGGG--SGGG--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcHHHHHHHHHHHHHHHHHHHHHHhccChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999888886655544433332 35554445555666666666655555554443
No 40
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=43.56 E-value=7.4e+02 Score=30.79 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHhhHHHHHHHHhcC---CHHHH-HHHHHHHHHHH--HhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001240 249 HACDMQLALESLVEEG---NYCKA-FQVLSEYLQLL--DSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEF 318 (1116)
Q Consensus 249 ~l~~~q~~Lq~lLee~---dY~~A-I~l~~e~q~vl--~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~F 318 (1116)
.+.-.|.-++.+++.. +|..+ ++++.+-.... ..++...+.+++...|+.+-.+..+++..-|..-...+
T Consensus 81 ~i~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~l 156 (508)
T PF04129_consen 81 DIVIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSL 156 (508)
T ss_pred HHcCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555421 34444 34444333333 34788899999999888887777888887665544443
No 41
>PRK10869 recombination and repair protein; Provisional
Probab=40.12 E-value=8.6e+02 Score=30.58 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCC-cchhhhhHHHHHHHHHHHH---HHHHHHHhhhhcccchhhHhHHHHH
Q 001240 268 KAFQVLSEYLQLLDSYSQL-SAIQEMSRGVEVWLGRTLQ---KLDSLLLGVCQEFKEEAYINVVDAY 330 (1116)
Q Consensus 268 ~AI~l~~e~q~vl~~l~~~-~c~~~L~~~Lqe~l~~i~~---~Ld~~L~~~c~~Fd~~~Y~~l~eAy 330 (1116)
+|+..+.++...+..+..+ +.+.++...+++.+..+++ .|+..+.+ .+|||.+...+.+=.
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~--~~~dp~~l~~ie~Rl 305 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR--LDLDPNRLAELEQRL 305 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHH
Confidence 5888888888888777665 3667777777776665553 33333332 278888766665433
No 42
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=40.06 E-value=5.7e+02 Score=28.49 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhHh
Q 001240 175 LSRQVMEHHEVMVKGMNLVRELEKDLKVANV---ICMNGRRHITSSINEVSRDLIVN 228 (1116)
Q Consensus 175 Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~---~~k~~R~~L~~a~~~vt~sL~Il 228 (1116)
|...+-|.-+-|...-.-|.+|+.+|+.... .+-+-|+.|..+...+..++..+
T Consensus 13 ~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L 69 (234)
T cd07665 13 MTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAML 69 (234)
T ss_pred cccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444434444444444444444444333 34556777777766665544444
No 43
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=40.04 E-value=6.4e+02 Score=29.08 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhHHHHHHHHHHHHHH-
Q 001240 167 QLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQALLDMLPILT- 245 (1116)
Q Consensus 167 qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~sL~Il~~~Rkrq~L~~ll~~L~- 245 (1116)
.++-+.+++.++|. ++--||..=..=++++...+.|...-+..-.-|..|+..|+-.-.-+.+.++++....-++.|+
T Consensus 53 kl~el~Kk~~k~I~-ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh 131 (426)
T KOG2008|consen 53 KLDELVKKIGKAIE-KSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNH 131 (426)
T ss_pred HHHHHHHHHHHHHh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHH
Confidence 45667788888874 5667887777778888888888887777777888887776421111233455666655555554
Q ss_pred HHHHHHhhH
Q 001240 246 ELCHACDMQ 254 (1116)
Q Consensus 246 ~Ik~l~~~q 254 (1116)
.++.+.+.+
T Consensus 132 ~~qrV~EaE 140 (426)
T KOG2008|consen 132 ATQRVMEAE 140 (426)
T ss_pred HHHHHHHHH
Confidence 344444433
No 44
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=35.96 E-value=2.9e+02 Score=34.30 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhhH-HHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHH-HHHHHHHHHhhh
Q 001240 238 LDMLPILTELCHACDMQ-LALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRT-LQKLDSLLLGVC 315 (1116)
Q Consensus 238 ~~ll~~L~~Ik~l~~~q-~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i-~~~Ld~~L~~~c 315 (1116)
.++|+.|-.-=+...+| ..|+..+.+++-.+|.+++..-.+.++. |-+.|.+-|......+ +..|..+|..+|
T Consensus 378 ReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~-----~Y~QLRELLtTFRltL~e~~L~~AL~~~~ 452 (574)
T COG3850 378 RELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLND-----AYRQLRELLTTFRLTLQEAELPPALEQML 452 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 35666665443334444 5677777778888999998888888865 3333333222222222 457778888888
Q ss_pred hcccchhhHhHHHHHHhhhhh
Q 001240 316 QEFKEEAYINVVDAYALIGDV 336 (1116)
Q Consensus 316 ~~Fd~~~Y~~l~eAy~LLgk~ 336 (1116)
..|....-.++.-.|.+=+..
T Consensus 453 ~~f~~qtg~~~~l~~qlp~~~ 473 (574)
T COG3850 453 AEFSNQTGITVTLDYQLPPRA 473 (574)
T ss_pred HHHHhccCCeEEEeccCCCCC
Confidence 877765444444455544443
No 45
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=35.05 E-value=24 Score=28.90 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=14.5
Q ss_pred ChhhHHHHHHhCCCCCH
Q 001240 1067 PETEYVHWAAAHPEYTK 1083 (1116)
Q Consensus 1067 ~e~el~~Wi~~h~eYs~ 1083 (1116)
+.++|.+|++.|++|-+
T Consensus 24 ~~~~l~~WL~~~p~yev 40 (45)
T smart00592 24 KAKDLERWLEENPEYEV 40 (45)
T ss_pred cHHHHHHHHhcCCCccc
Confidence 57899999999999853
No 46
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.34 E-value=1.1e+03 Score=30.13 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhHhHHHH
Q 001240 163 LRLAQLDRVSELLSRQVMEHH-------EVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNTNSKKKQ 235 (1116)
Q Consensus 163 ~~~~qld~V~~~Ls~~V~en~-------~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~sL~Il~~~Rkrq 235 (1116)
.+.++|+.++..=-+-|++.- +..-.|+..+.+++..|..--.+.+..|+.+.++.. +.++..+++..++.
T Consensus 197 ~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Iee--kn~lie~~n~Nn~k 274 (867)
T KOG2148|consen 197 RLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEE--KNNLIEMQNVNNKK 274 (867)
T ss_pred HHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhhhccchHH
Confidence 345566655443333333322 233345555666665555554444444444433321 12455566655555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCCHHHH---HHHHHHHHHHHHhcC
Q 001240 236 ALLDMLPILTELCHACDMQLALESLVEEGNYCKA---FQVLSEYLQLLDSYS 284 (1116)
Q Consensus 236 ~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~dY~~A---I~l~~e~q~vl~~l~ 284 (1116)
.+..+-.....|+ ++.-=...|.+|||..| |+-|..+-+++..+.
T Consensus 275 L~eEl~kvin~L~----vp~shi~aL~egdf~~a~~~ieact~aA~al~q~~ 322 (867)
T KOG2148|consen 275 LIEELDKVINRLD----VPSSHIAALTEGDFDEADQGIEACTWAAKALRQLM 322 (867)
T ss_pred HHHHHHHHHHhcc----CcHHHHHhcccCCccccchhHHHHHHHHHHHHHhh
Confidence 5555554444443 45544566789999988 455666666665544
No 47
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.16 E-value=6e+02 Score=28.46 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 186 MVKGMNLVRELEKDLKVANVICMNGRRHITSS 217 (1116)
Q Consensus 186 F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a 217 (1116)
.++.-..+..|++|+.++..+|...|+.+...
T Consensus 86 ~~q~y~q~s~Leddlsqt~aikeql~kyiReL 117 (333)
T KOG1853|consen 86 RVQFYQQESQLEDDLSQTHAIKEQLRKYIREL 117 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777777666433
No 48
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=32.43 E-value=4.2e+02 Score=24.76 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 173 ELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITS 216 (1116)
Q Consensus 173 ~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~ 216 (1116)
...+..+-+-+..|-.++..+.+|+.||......++..+..|+.
T Consensus 39 ~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 39 DLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667789999999999999999997777777776653
No 49
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=31.89 E-value=5.7e+02 Score=35.64 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCC-----------HHHHHHHH------HHHHHHHHhcCCCcchhhh
Q 001240 230 NSKKKQALLDMLPILTELCHACDMQLALESLVEEGN-----------YCKAFQVL------SEYLQLLDSYSQLSAIQEM 292 (1116)
Q Consensus 230 ~~Rkrq~L~~ll~~L~~Ik~l~~~q~~Lq~lLee~d-----------Y~~AI~l~------~e~q~vl~~l~~~~c~~~L 292 (1116)
..+++++..++|.+|.+|+.-.++ ++.++..++ ...|+-.+ .|.++++.+|+++..|.+|
T Consensus 271 D~kr~RRE~kvL~lLeQIraYC~~---~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeL 347 (2195)
T KOG2122|consen 271 DEKRGRREKKVLHLLEQIRAYCET---CWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAEL 347 (2195)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHH
Confidence 345667888899999988765544 444444432 22455543 3578889999999999887
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhhh
Q 001240 293 SRGVEVWLG-RTLQKLDSLLLGVCQ 316 (1116)
Q Consensus 293 ~~~Lqe~l~-~i~~~Ld~~L~~~c~ 316 (1116)
-.--.++.. ++.......|+++..
T Consensus 348 l~vDh~mhgp~tnd~~~~aLRrYa~ 372 (2195)
T KOG2122|consen 348 LQVDHEMHGPETNDGECNALRRYAG 372 (2195)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 665555555 445555555555443
No 50
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.43 E-value=1.3e+02 Score=37.16 Aligned_cols=170 Identities=14% Similarity=0.200 Sum_probs=100.7
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHhcchhh---hHHHHHhhhhhhhhHHHHHHHHHHHHHHcChhhHHHHhhhcccccccc
Q 001240 890 CAAADTVSLVARMLHRSRTRLQSMLLQNT---AIEDFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKEL 966 (1116)
Q Consensus 890 iVA~ESl~fla~~l~~l~p~L~~~Lp~~~---~l~~Fy~qtv~~~~dLr~~iy~~va~~~l~~~~~~~~ia~vkWdvkei 966 (1116)
+||.-||+.+-++|..-.|.++..|.... .+.+|-...-+..-|+..+|. +.+.. ++..+......+.|+.-+
T Consensus 76 ~VAlKsLIliH~ll~~G~~~f~~~l~~~~~~l~lS~F~d~s~~~~~d~safVR-~Ya~Y---Lderl~~~~~~~~d~~~~ 151 (491)
T KOG0251|consen 76 TVALKALILIHRLLKEGDPSFEQELLSRNLILNLSDFRDKSSSLTWDMSAFVR-TYALY---LDERLECYRVLGFDIEKV 151 (491)
T ss_pred eehHHHHHHHHHHHhcCcHHHHHHHHhcccccchhhhhcccccccchhhHHHH-HHHHH---HHHHHHHHHHhccccccc
Confidence 58999999999999988888885553322 556666555444555555554 22211 222223333334433311
Q ss_pred -------CccccchHHHHHHHHHHHHhhhcc----CCCChHHHHHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Q 001240 967 -------GLEHNGYVDLLLGEFKHYKTRLAH----GGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDL 1035 (1116)
Q Consensus 967 -------~~~hs~YVD~Ll~e~~~f~~rL~~----~~ip~~~~~~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~ 1035 (1116)
..-.+.+.+.+++.+..+-..|++ -+++.+..|.| |.+++..+|+-+=++=.|=++|=+.
T Consensus 152 ~~~~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~l----I~~A~~lvvkdsf~ly~~i~~gi~~----- 222 (491)
T KOG0251|consen 152 KRGKEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGL----IIEAFELVVKDSFKLYAAINDGIIN----- 222 (491)
T ss_pred cCcccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcH----HHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 112234488888877655555553 24554444444 4445555666666666666777443
Q ss_pred HHHHhhccccCCCCCCcchHHHHHHHHhhccChh--hHHHHHHh
Q 001240 1036 QVLINGLQHFVPVNVKPKLQIVETFIKAYYLPET--EYVHWAAA 1077 (1116)
Q Consensus 1036 q~l~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~--el~~Wi~~ 1077 (1116)
-||++....-.--.+-++.|.|+-=-.|+ ++.+|+|.
T Consensus 223 -----Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~ 261 (491)
T KOG0251|consen 223 -----LLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKS 261 (491)
T ss_pred -----HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554444457788899998777666 88999987
No 51
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=29.45 E-value=4.4e+02 Score=30.75 Aligned_cols=101 Identities=9% Similarity=0.079 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCc
Q 001240 298 VWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVLEDHEVQMLNSRLT 377 (1116)
Q Consensus 298 e~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i~~~~~~vi~~~v~~~~~~~~~~~~~~ 377 (1116)
++-+.+.+.+...|.+-++.=|...-+..+.=+.+||...+-++.+..+..+.|..+++..+......... ..
T Consensus 3 ~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~---~~---- 75 (331)
T PF08318_consen 3 EARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSD---SR---- 75 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---cc----
Confidence 34444444445555444444466666666667889999998999999999988888887766554321100 00
Q ss_pred HHhHhhhCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 378 YSDLCERIPESKFRQCLLKTLAVLFKLICSYHEIMN 413 (1116)
Q Consensus 378 y~dLc~~i~~d~~i~cl~~l~~~L~~lm~sy~~i~~ 413 (1116)
.+-.|..+++.|.+.+-.++..+-.++.
T Consensus 76 --------~~~~~~~~lt~LFe~ia~ii~~h~~lI~ 103 (331)
T PF08318_consen 76 --------SPVFYADALTKLFEHIATIIEQHQPLIE 103 (331)
T ss_pred --------ccccHHHHHHHHHHHHHHHHHHccHHHH
Confidence 1113666678888887777766666654
No 52
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.62 E-value=1.4e+03 Score=29.53 Aligned_cols=173 Identities=13% Similarity=0.221 Sum_probs=106.5
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHH-HcChhhHHHHhhhccccccccCccccchHHHHHHHH----HHHHhhhccCCCChH
Q 001240 922 DFYVNLVDSVPDLIEHIHKTTARL-LLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEF----KHYKTRLAHGGIHKE 996 (1116)
Q Consensus 922 ~Fy~qtv~~~~dLr~~iy~~va~~-~l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll~e~----~~f~~rL~~~~ip~~ 996 (1116)
++..-+++.+.+++.|=...++.. +.|+...++.+-.-+|=-..+ ++.++-=+ ..|+..- .+
T Consensus 465 d~~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~g~~-------~~~Iv~T~~dy~~D~~~~~------~~ 531 (667)
T KOG2286|consen 465 DTLKGLLDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWCAGSV-------TENIVATLDDYLPDFKELM------GE 531 (667)
T ss_pred chhHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhchhh-------HHHHHHHHHHHHHHHHHHh------hh
Confidence 334456667777777766666654 478888888888889966532 23333222 2222221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHhhccccCC-C-CCCcchHHHHHHHHh-----hccChh
Q 001240 997 VQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVP-V-NVKPKLQIVETFIKA-----YYLPET 1069 (1116)
Q Consensus 997 ~~~~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~q~l~~~le~l~~-~-~~~p~~~~Ve~YIKA-----yYl~e~ 1069 (1116)
.-..+.+.+...+.-..+...++=+-|.+++-..|-.|...|..-+.++.+ . .+++-..=|...|.+ +++
T Consensus 532 ~f~~fi~e~~~~~v~~Yl~~l~~kr~~~~~~~~~i~~d~~~~~~~f~~~~~~~~~~~~~~~~l~el~~~~d~d~~~~--- 608 (667)
T KOG2286|consen 532 YFVRFIEEASLELVIEYLRALSKKRASIQELIEKIKSDAETLYHFFRKYGSDVDTLISTISTLAELISLQDPDLIKL--- 608 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHhCcchhhhhhhhHHHHHHHhcCChHHHHH---
Confidence 133333333333333344445555666669999999999999999988876 1 122223334444443 222
Q ss_pred hHHHHHHhCCCCCHHHHHHHHHHHhhhccCCHHHHHHHHHHHHh
Q 001240 1070 EYVHWAAAHPEYTKSQILGLVNLVAAMKGWKRKTRLEILEKIES 1113 (1116)
Q Consensus 1070 el~~Wi~~h~eYs~~ql~~Lv~~~~~~~~~~kK~r~~ll~~ie~ 1113 (1116)
++.......|-.+..+|.+|+.+= .+++++.++++.+.+++
T Consensus 609 ~~~~l~~~YpD~~~~~l~~il~~R---~dls~~~~k~i~~~~~~ 649 (667)
T KOG2286|consen 609 EVSTLLECYPDIPKDHLEAILKIR---GDLSRSEKKKIVDILKE 649 (667)
T ss_pred HHHHHHHHCCCCcHHHHHHHHHHh---cCCCHHHHHHHHHHHHH
Confidence 555555566889999999998863 45899999999998886
No 53
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=27.81 E-value=1.5e+02 Score=29.34 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhcCCCcch
Q 001240 249 HACDMQLALESLVEEG---NYCKAFQVLSEYLQLLDSYSQLSAI 289 (1116)
Q Consensus 249 ~l~~~q~~Lq~lLee~---dY~~AI~l~~e~q~vl~~l~~~~c~ 289 (1116)
.+.+|...|..||..+ +|.+|++++..-++....+....-+
T Consensus 23 A~~qM~~vI~~Lv~~s~~~~y~kalecl~~lR~~~i~~~ep~~y 66 (120)
T PF08785_consen 23 AIQQMKNVIEQLVSDSGDQNYDKALECLRALREECIEEEEPDEY 66 (120)
T ss_dssp HHHHHHHHHHHHHHCSHCHHHHHHHHHHHHHHHHHHHHT-CHHH
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 4567788899999888 9999999988888877666654333
No 54
>PF11563 Protoglobin: Protoglobin; PDB: 2VEE_G 3QZZ_A 3R0G_A 3QZX_A 2VEB_A 1OR6_A 1OR4_B 2W31_B.
Probab=26.93 E-value=2.6e+02 Score=28.22 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=53.2
Q ss_pred HHHHHhHHHHHHhcchhhhHHHHHhhhhhhhhHHHHHHHH-HHHHHH-cChhhHHHHhhhccccccccCccccchHHHHH
Q 001240 901 RMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHK-TTARLL-LHIDGYVDRISNAKWEVKELGLEHNGYVDLLL 978 (1116)
Q Consensus 901 ~~l~~l~p~L~~~Lp~~~~l~~Fy~qtv~~~~dLr~~iy~-~va~~~-l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll 978 (1116)
..+..++|.++..+|. +++.||... ...|+++..+=. ....++ -....+...+-...+| ..||....
T Consensus 20 ~~L~~~~~~~~~~~~~--iv~~FY~~l-~~~pe~~~~~~~~~~~~~lk~~q~~~~~~l~s~~~d--------~~y~~~~~ 88 (158)
T PF11563_consen 20 ELLRSLAPIIEPHAPE--IVDDFYDHL-LRFPETARIFDSESTIERLKATQRRHWRELFSGDFD--------EEYVERRR 88 (158)
T ss_dssp HHHHHHHHHHHCTHHH--HHHHHHHHH-HTSHHHHGGGCCHCCHHHHHHHHHHHHHHCTSS-CS--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH-HCCHHHHHHhCChHHHHHHHHHHHHHHHHHhCCCch--------HHHHHHHH
Confidence 4555666777666665 899999874 444776544432 011111 0111122222111111 44555543
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 001240 979 GEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGL 1017 (1116)
Q Consensus 979 ~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~~~~Lvegf 1017 (1116)
+ +...+. .++||+.....-+..+...+.+.+.+..
T Consensus 89 ~-iG~~H~---~igl~~~~~~~~~~~~~~~l~~~l~~~~ 123 (158)
T PF11563_consen 89 R-IGQVHA---RIGLPPRWYIGAYSFLREFLLEALAEEY 123 (158)
T ss_dssp H-HHHHHH---HCT--HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred H-HHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 333333 4678988888777777777777777776
No 55
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=26.50 E-value=1.1e+03 Score=27.54 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=16.6
Q ss_pred HhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001240 281 DSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFK 319 (1116)
Q Consensus 281 ~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd 319 (1116)
++.+++.|..... ...+.......+|+..+..-+..|.
T Consensus 197 ~~~k~l~~~~~~~-~~s~~h~~at~~Le~el~~W~~sF~ 234 (312)
T PF04782_consen 197 QEAKSLDSSPSNE-PTSESHRQATLQLEAELQNWHSSFC 234 (312)
T ss_pred HHHhccCCcccCC-CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665553221 1112222333455555555444443
No 56
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=25.42 E-value=1.5e+03 Score=28.88 Aligned_cols=185 Identities=15% Similarity=0.202 Sum_probs=99.2
Q ss_pred HHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHhhHhHHHHHHHHHHHHHHHHHHH
Q 001240 176 SRQVMEHHEVMVKGMN----LVRELEKDLKVANVICMNGRRHITSSINEVSR-DLIVNTNSKKKQALLDMLPILTELCHA 250 (1116)
Q Consensus 176 s~~V~en~~~F~~am~----~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~-sL~Il~~~Rkrq~L~~ll~~L~~Ik~l 250 (1116)
-+.+...+..|.+++. .+..++.++..+...|....+.|..+++.... --++...+.+++.+..=.+.|..+..=
T Consensus 26 E~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 26 EKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444433 45567788999999999999999998876544 334445555556665555566665444
Q ss_pred HhhHHHHHHHHhcC------CHHHHHHHHH----HHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcc--
Q 001240 251 CDMQLALESLVEEG------NYCKAFQVLS----EYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEF-- 318 (1116)
Q Consensus 251 ~~~q~~Lq~lLee~------dY~~AI~l~~----e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~F-- 318 (1116)
+++-+.=...|..| +|..|++=+. .|...+ ...+-+.=-+|..+....++..-++|-.-+..-|...
T Consensus 106 f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL-~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l~~ 184 (618)
T PF06419_consen 106 FTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILL-STENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSLNL 184 (618)
T ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44443333344455 5666665433 455555 2234444333433333333333334433334444443
Q ss_pred -cchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 319 -KEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKSIVL 364 (1116)
Q Consensus 319 -d~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i~~~~~~vi~~~v~ 364 (1116)
.++.-..+..|...|..-..+.......|.++ ....++..|+.
T Consensus 185 ~~~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~---R~~~l~~~F~~ 228 (618)
T PF06419_consen 185 DNPEVSPLLRRALRYLRERPVLFNYCLDEFAEA---RSKALLRRFLD 228 (618)
T ss_pred cCcccchHHHHHHHHHhcChHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34456677788888866544433333333221 22355666654
No 57
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.40 E-value=8e+02 Score=25.99 Aligned_cols=57 Identities=5% Similarity=-0.055 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhHhhHhHHHHHHHHHHHHHHH
Q 001240 190 MNLVRELEKDLKVANVICMNGRRHITSSINEVSR--DLIVNTNSKKKQALLDMLPILTE 246 (1116)
Q Consensus 190 m~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~--sL~Il~~~Rkrq~L~~ll~~L~~ 246 (1116)
+-++-+||+.....-..|++-|..|...+..++. .-.-.+-+|-++...+...+-+.
T Consensus 115 ~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 115 ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888887777888889999888765421 12222334444444444444333
No 58
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=35 Score=31.56 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCC
Q 001240 81 PARAAAAAVVARALAGLPPHQR 102 (1116)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (1116)
-.|+--+++++|-+|||+|+|+
T Consensus 34 s~Rt~fvrsivrEiaGlsPyEr 55 (97)
T COG5051 34 SKRTEFVRSIVREIAGLSPYER 55 (97)
T ss_pred ccHHHHHHHHHHHHccCCHHHH
Confidence 4688889999999999999887
No 59
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.97 E-value=1.1e+02 Score=23.89 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=16.9
Q ss_pred ChhhHHHHHHhCC-----CC-CHHHHHHHH
Q 001240 1067 PETEYVHWAAAHP-----EY-TKSQILGLV 1090 (1116)
Q Consensus 1067 ~e~el~~Wi~~h~-----eY-s~~ql~~Lv 1090 (1116)
+++||.+|+..|. .. +..+|+.+|
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~ 34 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLA 34 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 5789999999983 13 566666554
No 60
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.46 E-value=1.1e+03 Score=26.40 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 001240 340 AEKIQSFFMQEVIS-ETHSVLKSIVLE 365 (1116)
Q Consensus 340 ~d~l~~~F~~~i~~-~~~~vi~~~v~~ 365 (1116)
.++.+..+...+.. .+..+|..|+..
T Consensus 220 ~~~~~e~~~~~~~~id~~~Di~~fv~~ 246 (261)
T cd07648 220 VGQVHEEFKRQVDELTVDKLLRQFVES 246 (261)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 34455555555544 345666666653
No 61
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=22.98 E-value=1.4e+03 Score=27.59 Aligned_cols=155 Identities=21% Similarity=0.160 Sum_probs=73.1
Q ss_pred CCCchhhhHHHHhhhhhhhhhcCcC-CCCCCCCCchHHHHHHHHHHHHHcC-CCC----------CCCcc-CCCCccccc
Q 001240 47 GGMDLSKVGEKLLSSVRSARSLGLL-PSTSDRPEVPARAAAAAVVARALAG-LPP----------HQRYS-LSSSSEELS 113 (1116)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~-~~~~~~~~~ 113 (1116)
|-.|-|--||-=.||-+|---=|-+ |+|+.+-++-+|-+.--.--.++-| |-. ..|-. ..| +
T Consensus 14 ~~~~as~~meSscss~ss~~GG~~~p~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~As-----v 88 (552)
T KOG2129|consen 14 LHIDASGRMESSCSSHSSHSGGGHEPFSPSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLAS-----V 88 (552)
T ss_pred ccccccccccCCcccccCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhh-----h
Confidence 4444444455444444443333344 7888888888887765543333333 111 11100 000 1
Q ss_pred cccCCCchh------hhhhhhhhhccccCCCchhhhhcc--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001240 114 SIYGSRPQV------QVVEDLEEDFYEEDFDPVSHILEH--IPPEENDLEYFEKQAALRLAQLDRVSELLSRQVMEHHEV 185 (1116)
Q Consensus 114 ~~~~~~~~~------eiLesI~~~fF~~~FDp~~yeL~k--Lp~~~~dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~ 185 (1116)
.|-...+++ -+|..|++-|=++.-.++.||.+. |...++ .-+++++. ++.=..+..+.+..
T Consensus 89 ~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Ls--rkl~qLr~---------ek~~lEq~leqeqe 157 (552)
T KOG2129|consen 89 EIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLS--RKLKQLRH---------EKLPLEQLLEQEQE 157 (552)
T ss_pred HHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchh--HHHHHHHh---------hhccHHHHHHHHHH
Confidence 122222222 235566666555555666775543 111111 12222211 01112334556666
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 186 MV--KGMNLVRELEKDLKVANVICMNGRRHITSS 217 (1116)
Q Consensus 186 F~--~am~~I~eL~~dL~~a~~~~k~~R~~L~~a 217 (1116)
|+ +-|..|++++.+-..-....+..|+.--..
T Consensus 158 f~vnKlm~ki~Klen~t~~kq~~leQLRre~V~l 191 (552)
T KOG2129|consen 158 FFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQL 191 (552)
T ss_pred HHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHH
Confidence 66 678889988877555544455555554333
No 62
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.97 E-value=1.2e+03 Score=26.93 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhh--h-h
Q 001240 153 DLEYFEKQAALRLAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVA----NVICMNGRRHITSSINEVSR--D-L 225 (1116)
Q Consensus 153 dl~~l~~~~~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a----~~~~k~~R~~L~~a~~~vt~--s-L 225 (1116)
.+.+|....+.....++.++..+.+.-+.| .+..+......+++.+|..- ....+..|..|....+.... . -
T Consensus 34 ~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~h-s~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~ 112 (297)
T KOG0810|consen 34 NLEEFFEDVEEIRDDIEKLDEDVEKLQKLH-SKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN 112 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 366666666666678888888887777776 77777777666555555544 44456667777766544321 1 1
Q ss_pred hHhhHh-HHHHHHHHHHHHHH-HHHHHHhhHHHHHH
Q 001240 226 IVNTNS-KKKQALLDMLPILT-ELCHACDMQLALES 259 (1116)
Q Consensus 226 ~Il~~~-Rkrq~L~~ll~~L~-~Ik~l~~~q~~Lq~ 259 (1116)
+..... -+|.+..-+.++|+ .|....+++...+.
T Consensus 113 ~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~ 148 (297)
T KOG0810|consen 113 RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYRE 148 (297)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 23344444434443 56666777666553
No 63
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=22.92 E-value=5.5e+02 Score=25.41 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=44.9
Q ss_pred HHHHHHHH--HHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 001240 240 MLPILTEL--CHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQ 316 (1116)
Q Consensus 240 ll~~L~~I--k~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~ 316 (1116)
++..|+.+ +.|..++.+|.+|=.+. |..+|.+-.-|..=+=+++-..-|.+.+..++.+|..-|++-|.
T Consensus 4 ~l~kLkE~He~ev~glq~K~~~L~~er--------c~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~ 74 (120)
T PF10482_consen 4 LLNKLKEIHEKEVQGLQNKLLELKKER--------CLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRAGLCDRCT 74 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH--------cccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 34444444 34666677776665432 44456654445555557777888899999999999998887554
No 64
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=22.88 E-value=40 Score=27.77 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=11.1
Q ss_pred hhHHHHHHhCCCCC
Q 001240 1069 TEYVHWAAAHPEYT 1082 (1116)
Q Consensus 1069 ~el~~Wi~~h~eYs 1082 (1116)
.+|.+|+++||+|-
T Consensus 28 ~~L~~WL~~~P~y~ 41 (46)
T PF07533_consen 28 KELEEWLEEHPGYE 41 (46)
T ss_dssp CCHHHHHHH-TTEE
T ss_pred HHHHHHHHHCcCce
Confidence 48999999999984
No 65
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=22.42 E-value=7.6e+02 Score=25.15 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHH
Q 001240 248 CHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWL 300 (1116)
Q Consensus 248 k~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l 300 (1116)
-.|..+..+|+......+...|+.-.....+.+...-.+.-+..+..++++.+
T Consensus 65 ~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~ 117 (171)
T PF03357_consen 65 SNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEM 117 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34455566666666666666666665555555543334444445444444433
No 66
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.18 E-value=1.1e+03 Score=26.19 Aligned_cols=54 Identities=7% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhHh
Q 001240 175 LSRQVMEHHEVMVKGMNLVRELEKDLKVANVI---CMNGRRHITSSINEVSRDLIVN 228 (1116)
Q Consensus 175 Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~---~k~~R~~L~~a~~~vt~sL~Il 228 (1116)
|...+-+.-+-|...-.-|.+|+..|+.+... +-+-|+.|..+...+..++..+
T Consensus 13 ~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L 69 (234)
T cd07664 13 MTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAML 69 (234)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444344444444455555555444333 4456777777766665544444
No 67
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=22.04 E-value=1e+03 Score=29.02 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhhhhHhhHhHHH-HHHHHHH
Q 001240 165 LAQLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLK--VANVICMNGRRHITSSINEVSRDLIVNTNSKKK-QALLDML 241 (1116)
Q Consensus 165 ~~qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~--~a~~~~k~~R~~L~~a~~~vt~sL~Il~~~Rkr-q~L~~ll 241 (1116)
+..++.|..+|...+.++++. |+.+=-..+ +.+...++.|+.....++. +-.++..|++| .|-..++
T Consensus 316 V~~~~~vr~~ltaemAd~~~~-------ik~llvrAEDaRl~~d~~~m~k~y~~l~~~---n~~l~~~~~~R~~N~~~l~ 385 (431)
T PF14782_consen 316 VDELNEVRQRLTAEMADHSNL-------IKSLLVRAEDARLMGDMKNMRKYYAELYDL---NRDLINEYKIRCNNHEELL 385 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhhHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHH
Confidence 356778888888777776654 222211111 2222234445555444322 34455666666 8999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 001240 242 PILTELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDS 282 (1116)
Q Consensus 242 ~~L~~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~ 282 (1116)
..|+.+..+-+--.+|+ -|.+. -+++..|+.++..
T Consensus 386 ~~lk~vn~~iq~a~~LR----vG~~~--~~~v~~cR~Aik~ 420 (431)
T PF14782_consen 386 SSLKEVNQIIQKASRLR----VGKAK--TQVVAACRAAIKN 420 (431)
T ss_pred HHHHHHHHHHHHHhhhc----cCchH--HHHHHHHHHHHHh
Confidence 99988877666666654 34443 4556677777643
No 68
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.54 E-value=1.7e+03 Score=28.00 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHH---HHHHHHHHhhhhcccchhhHhHHHHHHh
Q 001240 268 KAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTL---QKLDSLLLGVCQEFKEEAYINVVDAYAL 332 (1116)
Q Consensus 268 ~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~---~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~L 332 (1116)
+|+..+..+.+.+..+ .-+-+.++...+++.+..++ ..|+..+.++ .|||.+...+.+-...
T Consensus 248 ~~~~~l~~~~~~l~~~-~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l--~~dp~~L~ele~RL~~ 312 (563)
T TIGR00634 248 SLLEGLGEAQLALASV-IDGSLRELAEQVGNALTEVEEATRELQNYLDEL--EFDPERLNEIEERLAQ 312 (563)
T ss_pred CHHHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 5788888888888776 33456667666666555554 3444444443 6889887776655433
No 69
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=21.26 E-value=1.1e+03 Score=31.38 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=31.1
Q ss_pred HHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Q 001240 248 CHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYS 284 (1116)
Q Consensus 248 k~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~ 284 (1116)
+.|.++=.+|+++.++|+-.+|-+++.+-++.++.+.
T Consensus 538 ~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq 574 (820)
T PF13779_consen 538 QDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQ 574 (820)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 3455566688899999999999999999999998765
No 70
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=21.00 E-value=5.4e+02 Score=30.61 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHhhHhHHHHHHHHHHHHHHHHH
Q 001240 190 MNLVRELEKDLKVANVICMNGRRHITSSINEVSR---DLIVNTNSKKKQALLDMLPILTELC 248 (1116)
Q Consensus 190 m~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~---sL~Il~~~Rkrq~L~~ll~~L~~Ik 248 (1116)
|.++.+|++++...-...-..|.+|+.+...+-. .+.-....+|+.....+-.+|..+|
T Consensus 1 m~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elk 62 (428)
T PF00846_consen 1 MSTLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELK 62 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999988888888899999999877642 4555566667777777777776664
No 71
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=20.70 E-value=1.1e+03 Score=25.74 Aligned_cols=56 Identities=2% Similarity=0.028 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 001240 162 ALRLAQLDRVSELLSRQVMEHHEVMVKGMNLV-RELEKDLKVANVICMNGRRHITSS 217 (1116)
Q Consensus 162 ~~~~~qld~V~~~Ls~~V~en~~~F~~am~~I-~eL~~dL~~a~~~~k~~R~~L~~a 217 (1116)
+.+...+..+...|.++|.+.=.+|...+..- ..+..++..+..........|..+
T Consensus 70 e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~Ka 126 (236)
T cd07651 70 ESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKA 126 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888887777777666542 234444444433333333333333
No 72
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=20.30 E-value=1.4e+03 Score=26.55 Aligned_cols=80 Identities=11% Similarity=0.294 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhh-hhhHhhHhHHH-HHHHHHHHHHHHH--HHHHhhHHHHHHHHhcCCH
Q 001240 192 LVRELEKDLKVANVICMNGRR-HITSSINEVSR-DLIVNTNSKKK-QALLDMLPILTEL--CHACDMQLALESLVEEGNY 266 (1116)
Q Consensus 192 ~I~eL~~dL~~a~~~~k~~R~-~L~~a~~~vt~-sL~Il~~~Rkr-q~L~~ll~~L~~I--k~l~~~q~~Lq~lLee~dY 266 (1116)
+|..|+.-|.... .|-+.|+ .|..=+..|.. .+.|+.-+.+| .-|..+.+.-..| .+|.++...|+-.+++..|
T Consensus 183 S~k~ik~~F~~l~-~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~ 261 (302)
T PF07139_consen 183 SIKKIKQTFAELQ-SCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSERKY 261 (302)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhh
Confidence 4666666666543 3333343 34444666764 77887665555 7788887777788 5578888999999999999
Q ss_pred HHHHHH
Q 001240 267 CKAFQV 272 (1116)
Q Consensus 267 ~~AI~l 272 (1116)
.+.|--
T Consensus 262 de~lg~ 267 (302)
T PF07139_consen 262 DEELGR 267 (302)
T ss_pred HHHHhH
Confidence 987754
Done!