Query 001240
Match_columns 1116
No_of_seqs 173 out of 211
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1e_A Vacuolar protein sortin 98.2 1.4E-05 4.6E-10 78.9 12.5 119 924-1049 10-130 (141)
2 2fji_1 Exocyst complex compone 96.6 0.15 5E-06 59.1 22.6 215 885-1113 134-368 (399)
3 2a2f_X Exocyst complex compone 93.8 1.6 5.3E-05 49.1 17.6 111 931-1044 178-291 (325)
4 2d2s_A Exocyst complex compone 91.4 12 0.0004 40.0 19.6 93 246-344 14-115 (235)
5 3iv1_A Tumor susceptibility ge 73.2 30 0.001 30.4 10.3 63 167-229 4-66 (78)
6 2f6h_X Myosin-2, type V myosin 69.4 29 0.001 40.1 12.5 137 922-1093 153-292 (419)
7 2k48_A Nucleoprotein; viral pr 63.6 44 0.0015 30.8 9.6 60 190-249 34-96 (107)
8 3fhn_A Protein transport prote 57.1 61 0.0021 39.9 12.5 140 923-1068 503-658 (706)
9 4a64_A Cullin-4B, CUL4B, CUL-4 54.5 2.3E+02 0.008 31.5 16.3 85 273-359 218-303 (354)
10 3ghg_A Fibrinogen alpha chain; 54.4 96 0.0033 36.4 12.7 28 286-313 163-191 (562)
11 2ic6_A Nucleocapsid protein; h 53.9 66 0.0022 28.3 8.6 61 189-249 3-66 (78)
12 3haj_A Human pacsin2 F-BAR; pa 53.1 3.3E+02 0.011 31.7 19.0 24 165-188 94-117 (486)
13 1or4_A Heme-based aerotactic t 45.2 2.4E+02 0.0083 28.0 14.5 103 900-1017 48-152 (178)
14 2ic9_A Nucleocapsid protein; h 42.3 78 0.0027 28.8 7.5 61 189-249 3-66 (96)
15 2ckc_A Chromodomain-helicase-D 39.3 9.6 0.00033 33.3 1.1 16 1068-1083 46-61 (80)
16 1oxz_A ADP-ribosylation factor 31.3 1.2E+02 0.0042 31.0 8.1 40 248-287 114-158 (186)
17 2w31_A Globin; oxygen transpor 31.0 1.1E+02 0.0039 29.6 7.8 35 901-938 19-53 (162)
18 1orj_A Flagellar protein FLIS; 28.9 1.9E+02 0.0064 27.8 8.5 78 258-344 37-121 (130)
19 3fx7_A Putative uncharacterize 28.4 1.3E+02 0.0045 27.3 6.7 70 528-602 21-92 (94)
20 3m3w_A Pacsin3, protein kinase 27.0 6.4E+02 0.022 27.4 15.6 84 263-365 203-287 (320)
21 3ns4_A Vacuolar protein sortin 26.0 2.5E+02 0.0086 30.3 9.5 110 1000-1111 23-175 (271)
22 2d2s_A Exocyst complex compone 24.8 4.6E+02 0.016 27.5 11.5 49 250-298 91-141 (235)
23 2wzk_A Cullin-5, CUL-5; UBL co 24.3 6.5E+02 0.022 28.2 13.6 87 272-360 237-327 (391)
24 2fji_1 Exocyst complex compone 23.8 7.2E+02 0.025 27.9 13.9 165 891-1094 186-367 (399)
25 4fi5_A Nucleoprotein; structur 23.7 3.9E+02 0.014 24.9 9.1 58 192-249 23-83 (113)
26 3i2w_A Syndapin, LD46328P; EFC 21.3 7.4E+02 0.025 26.1 13.5 51 263-318 190-240 (290)
27 4eoz_B Cullin-3, CUL-3; E3 ubi 21.1 8.6E+02 0.03 26.8 19.6 183 175-359 84-312 (364)
28 4abx_A DNA repair protein RECN 20.9 5.6E+02 0.019 25.3 10.8 66 259-327 59-128 (175)
29 3lpz_A GET4 (YOR164C homolog); 20.3 3.5E+02 0.012 30.2 9.8 45 259-303 44-88 (336)
No 1
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=98.17 E-value=1.4e-05 Score=78.93 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=101.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHcChhhHHHHhhhccccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Q 001240 924 YVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLE 1003 (1116)
Q Consensus 924 y~qtv~~~~dLr~~iy~~va~~~l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~ 1003 (1116)
|+++..-..|.+.-||..++..+-+.-. ..+. +||++- +-+|+|...|.+|+.++++-|. ..+|++....|+.
T Consensus 10 fDkv~rdy~eH~~eI~~KLv~Im~~r~~--~~l~--~Wd~k~--pvpS~~m~tl~Ke~~kLH~~Ls-~~LP~~~v~~Im~ 82 (141)
T 3n1e_A 10 FDHITKDYHDHIAEISAKLVAIMDSLFD--KLLS--KYEVKA--PVPSPCFRNICKQMTKMHEAIF-DLLPEEQTQMLFL 82 (141)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHH--HHHT--TCCCCS--SSSCHHHHHHHHHHHHHHHHHT-TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HhccCC--CCCCHHHHHHHHHHHHHHHHHH-hhCCHHHHHHHHH
Confidence 6777777888888888777776543322 1223 899984 3599999999999999999997 6789999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCHHHHH--HHHHHHHHHHhhccccCCCC
Q 001240 1004 YGVEIVAETLIEGLSRVKRCTDEGRA--LMSLDLQVLINGLQHFVPVN 1049 (1116)
Q Consensus 1004 ~~i~~~~~~Lvegfs~vkKCs~eGRa--lMqlD~q~l~~~le~l~~~~ 1049 (1116)
.+...+.+.|-+.|.++.--|+.|+. +|..|+..|.++|.+|.+..
T Consensus 83 ~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~ 130 (141)
T 3n1e_A 83 RINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLK 130 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999997 59999999999999999854
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.15 Score=59.14 Aligned_cols=215 Identities=10% Similarity=0.125 Sum_probs=157.7
Q ss_pred chhhhHHHH-hHHHHHHHHHHHhHHHHHHhcchhh--hHHHHHhhhhhhhhHHHHHHHHHHHHH-HcChhhHHHHhhhcc
Q 001240 885 GLKERCAAA-DTVSLVARMLHRSRTRLQSMLLQNT--AIEDFYVNLVDSVPDLIEHIHKTTARL-LLHIDGYVDRISNAK 960 (1116)
Q Consensus 885 gL~eRiVA~-ESl~fla~~l~~l~p~L~~~Lp~~~--~l~~Fy~qtv~~~~dLr~~iy~~va~~-~l~~~~~~~~ia~vk 960 (1116)
|+.+.++|+ ......+.....+++-+...+.+.. .+..=+..+.+.+.++..+....++.. +.|++..++.+-..+
T Consensus 134 ~~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~ 213 (399)
T 2fji_1 134 GLVEYLIAVSNDQMKAADYAVAISSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKT 213 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGG
T ss_pred cHHHhhhhhhccHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 346777776 6666666677777777777776553 222226677778888888887777655 578888888888899
Q ss_pred ccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhhhhcccCC---HHHHHHHHHHHHH
Q 001240 961 WEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCT---DEGRALMSLDLQV 1037 (1116)
Q Consensus 961 Wdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~~~~Lvegfs~vkKCs---~eGRalMqlD~q~ 1037 (1116)
|-- .++|+.++.-+..|..-+. ..+.++....+++.+...+....+.+.-+-.||+ ..|-..|..|..+
T Consensus 214 W~~-------~~~v~~i~~ti~dy~~d~~-~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~ 285 (399)
T 2fji_1 214 WYM-------GSQAQQIADTLDEYLLDIK-PQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEI 285 (399)
T ss_dssp GTT-------CCHHHHHHHHHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHH
T ss_pred hcC-------CcHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Confidence 922 2289999998888876663 4578888999999999888888888887734788 8999999999999
Q ss_pred HHhhccccCCCCC-----Cc----chHHHHHHHHhhccC-hhhHHHH---HHhCCCCCHHHHHHHHHHHhhhccCCHHHH
Q 001240 1038 LINGLQHFVPVNV-----KP----KLQIVETFIKAYYLP-ETEYVHW---AAAHPEYTKSQILGLVNLVAAMKGWKRKTR 1104 (1116)
Q Consensus 1038 l~~~le~l~~~~~-----~p----~~~~Ve~YIKAyYl~-e~el~~W---i~~h~eYs~~ql~~Lv~~~~~~~~~~kK~r 1104 (1116)
+..-+.++.+... +. -++.+-. |++ =| +.=.+.| ++.++.-+..++.+++.+ . ...+|.++
T Consensus 286 l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~--d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~--R-~D~~~~~~ 359 (399)
T 2fji_1 286 FYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LSC--EPIDSILDIWQKYLEVYWDSRIDLLVGILKC--R-KDVSSSER 359 (399)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHH--SCGGGHHHHHHHHHTTCTTCCSHHHHHHHTT--C-TTCCHHHH
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHHHH-hcC--CcHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--c-cCCCHHHH
Confidence 9999999887432 11 2233334 553 24 5555566 777888899999999764 2 24789999
Q ss_pred HHHHHHHHh
Q 001240 1105 LEILEKIES 1113 (1116)
Q Consensus 1105 ~~ll~~ie~ 1113 (1116)
+++++.+++
T Consensus 360 k~ll~~~~~ 368 (399)
T 2fji_1 360 KKIVQQATE 368 (399)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998853
No 3
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=93.83 E-value=1.6 Score=49.09 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHH-cChhhHHHHhhhccccccccCccccchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHH
Q 001240 931 VPDLIEHIHKTTARLL-LHIDGYVDRISNAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIV 1009 (1116)
Q Consensus 931 ~~dLr~~iy~~va~~~-l~~~~~~~~ia~vkWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~ 1009 (1116)
+.+.|+.-...+...+ -.++.++ .++...|...+...++|.|+..++.=++....-+ ..+|.++...+--.+...+
T Consensus 178 f~~~r~~Ae~~I~~~v~~KIDdfl-~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~sl--~~LP~~v~~~~~~~a~~hi 254 (325)
T 2a2f_X 178 FHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVEPPGIASAFITDMISYLKSTFDSF--AFKLPHIAQAACRRTFEHI 254 (325)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHH-TTCCTTCC----CCSCCHHHHHHHHHHHHHHHTT--TTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCccHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH
Confidence 3334444443333332 2356666 7888999999999999999999999888877743 6899999987777666677
Q ss_pred HHHHHHhhh--hcccCCHHHHHHHHHHHHHHHhhccc
Q 001240 1010 AETLIEGLS--RVKRCTDEGRALMSLDLQVLINGLQH 1044 (1116)
Q Consensus 1010 ~~~Lvegfs--~vkKCs~eGRalMqlD~q~l~~~le~ 1044 (1116)
.+.|++-+- .||+-|.+|-+.+-+|++.+-.-...
T Consensus 255 s~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~ 291 (325)
T 2a2f_X 255 AEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAAS 291 (325)
T ss_dssp HHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHh
Confidence 777777665 58999999999999999998666544
No 4
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=91.41 E-value=12 Score=40.03 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=62.0
Q ss_pred HHHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC------CcchhhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001240 246 ELCHACDMQLALESLVEEGNYCKAFQVLSEYLQLLDSYSQ------LSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFK 319 (1116)
Q Consensus 246 ~Ik~l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl~~l~~------~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd 319 (1116)
.++-+-+.+..|+.+|.+.+|.+|++++.+++..+...+. ..-...+..++.+.-..+.++|-..+. +..+
T Consensus 14 ~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~---~~~~ 90 (235)
T 2d2s_A 14 RLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL---SSNE 90 (235)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH---TCSS
T ss_pred hHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCC
Confidence 4556677788999999999999999999999999987663 233555666777766666666655542 2333
Q ss_pred chhhHhHHHHHHh---hhhhhhHHHHHH
Q 001240 320 EEAYINVVDAYAL---IGDVSGLAEKIQ 344 (1116)
Q Consensus 320 ~~~Y~~l~eAy~L---Lgk~~~~~d~l~ 344 (1116)
...+..+..+ ||+...+.+-+-
T Consensus 91 ---~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 91 ---IVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHCCChhHHHHHHH
Confidence 3445555555 666544444333
No 5
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.16 E-value=30 Score=30.43 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 001240 167 QLDRVSELLSRQVMEHHEVMVKGMNLVRELEKDLKVANVICMNGRRHITSSINEVSRDLIVNT 229 (1116)
Q Consensus 167 qld~V~~~Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~sL~Il~ 229 (1116)
-+.+|+-+|-+.+.+.-+..=.+|++++..+++|....+.++.....|.+-.+.+..++.++.
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999999999999999999888888888777766666643
No 6
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=69.45 E-value=29 Score=40.15 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=80.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHcChhhHHHHhhhccccc--cccCccccchHHHHHHHHHHHHhhhccCCCChHHHH
Q 001240 922 DFYVNLVDSVPDLIEHIHKTTARLLLHIDGYVDRISNAKWEV--KELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEVQD 999 (1116)
Q Consensus 922 ~Fy~qtv~~~~dLr~~iy~~va~~~l~~~~~~~~ia~vkWdv--kei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~~~ 999 (1116)
..|.+.+ ..+.+.++..+...+++.+.+..-...-.|.. |-....+.+-++.+++-+..+...|..-.+++.+..
T Consensus 153 ~iy~~li---~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~Il~~L~~~~~~L~~~~V~~~l~~ 229 (419)
T 2f6h_X 153 NIYNIWL---KKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFANTEEYTMDDILTFFNSIYWCMKSFHIENEVFH 229 (419)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHTTSCSSTTTTC---------------CCCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhCcccccccccccccccccccccCCCccCHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4455543 34444555555555665554332222111221 111122345689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHhhccccCCCCCCcchHHHHHHHHhhccChhhHHHHHHhCC
Q 001240 1000 LLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEYVHWAAAHP 1079 (1116)
Q Consensus 1000 ~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~q~l~~~le~l~~~~~~p~~~~Ve~YIKAyYl~e~el~~Wi~~h~ 1079 (1116)
.++.+++++++-.+...+=-=++|-.--|+ || ||+ .-+.+|+|++.|.
T Consensus 230 Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G-~q----------------------------Ir~---nls~Le~W~~~~~ 277 (419)
T 2f6h_X 230 AVVTTLLNYVDAICFNELIMKRNFLSWKRG-LQ----------------------------LNY---NVTRLEEWCKTHG 277 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCHHHH-HH----------------------------HHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccchhhH-HH----------------------------HHh---hHHHHHHHHHHcC
Confidence 999999999988887776433343333232 22 222 1236778888875
Q ss_pred -CCCHHHHHHHHHHH
Q 001240 1080 -EYTKSQILGLVNLV 1093 (1116)
Q Consensus 1080 -eYs~~ql~~Lv~~~ 1093 (1116)
++...+|.-|+.++
T Consensus 278 l~~a~~~L~~l~Qa~ 292 (419)
T 2f6h_X 278 LTDGTECLQHLIQTA 292 (419)
T ss_dssp CTTHHHHTHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 46666666555543
No 7
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=63.56 E-value=44 Score=30.83 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHhhHhHHHHHHHHHHHHHHHHHH
Q 001240 190 MNLVRELEKDLKVANVICMNGRRHITSSINEVSR---DLIVNTNSKKKQALLDMLPILTELCH 249 (1116)
Q Consensus 190 m~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~---sL~Il~~~Rkrq~L~~ll~~L~~Ik~ 249 (1116)
|.++.+|++++...-......|.+|..+...+-. .+.-....+|+.-...+-.+|..+|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666655566669999999877642 46666677777888888888777754
No 8
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=57.11 E-value=61 Score=39.90 Aligned_cols=140 Identities=9% Similarity=0.177 Sum_probs=94.7
Q ss_pred HHhhhhhhhhHHHHH-HHHHHHHHHcC-h----hhHHHHhhhccccccccC--------ccccchHHHHHHHHHHHHhhh
Q 001240 923 FYVNLVDSVPDLIEH-IHKTTARLLLH-I----DGYVDRISNAKWEVKELG--------LEHNGYVDLLLGEFKHYKTRL 988 (1116)
Q Consensus 923 Fy~qtv~~~~dLr~~-iy~~va~~~l~-~----~~~~~~ia~vkWdvkei~--------~~hs~YVD~Ll~e~~~f~~rL 988 (1116)
.|..++.....+|.- +...++..+.+ + ..|.. ...|.....+ ..+|+-.+..+.-+......|
T Consensus 503 IFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k---~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L 579 (706)
T 3fhn_A 503 LFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFK---ISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKL 579 (706)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHH---CCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 566677777777766 66555555432 2 22332 3479765322 224776777777666666666
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHhhccccCCCCCCcc--hHHHHHHHHhhcc
Q 001240 989 AHGGIHKEVQDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPK--LQIVETFIKAYYL 1066 (1116)
Q Consensus 989 ~~~~ip~~~~~~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~q~l~~~le~l~~~~~~p~--~~~Ve~YIKAyYl 1066 (1116)
...-||......||+.++..+.+-|.+..=..-|=|..|-++.+.|+..+..-++ +.. ++ |. ..-+....+---+
T Consensus 580 ~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~-~~-~~~~~~~L~E~l~LL~L 656 (706)
T 3fhn_A 580 DSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPS-HA-TNYKCMSLHELVKILKL 656 (706)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCT-TC-CCHHHHHHHHHHHHHGG
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc-CCC-cc-hhhHHHHHHHHHHHcCC
Confidence 6555799999999999999988888887666678899999999999999988888 222 12 22 2234555555555
Q ss_pred Ch
Q 001240 1067 PE 1068 (1116)
Q Consensus 1067 ~e 1068 (1116)
|.
T Consensus 657 ~~ 658 (706)
T 3fhn_A 657 KY 658 (706)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 9
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=54.46 E-value=2.3e+02 Score=31.47 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhh-hcccchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 001240 273 LSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVC-QEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEV 351 (1116)
Q Consensus 273 ~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c-~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i 351 (1116)
+.+-......|-+-+..+.|..-+++. .|.+.++..|.+-| ...+.+++..+..-|.|+.++..-.+.+...|.+.|
T Consensus 218 l~eE~~R~~~yL~~~T~~~l~~~~e~~--LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I 295 (354)
T 4a64_A 218 LEEEADRLITYLDQTTQKSLIATVEKQ--LLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYI 295 (354)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHH--HTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHH
Confidence 333333344554444444444444432 22344454443322 346777899999999999999877788888888777
Q ss_pred HHHHHHHH
Q 001240 352 ISETHSVL 359 (1116)
Q Consensus 352 ~~~~~~vi 359 (1116)
...-.+++
T Consensus 296 ~~~G~~iv 303 (354)
T 4a64_A 296 KAFGSTIV 303 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66544443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.41 E-value=96 Score=36.41 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=18.1
Q ss_pred CcchhhhhHHH-HHHHHHHHHHHHHHHHh
Q 001240 286 LSAIQEMSRGV-EVWLGRTLQKLDSLLLG 313 (1116)
Q Consensus 286 ~~c~~~L~~~L-qe~l~~i~~~Ld~~L~~ 313 (1116)
=+|-+.+..++ .+-|+.++++|+++-..
T Consensus 163 gsCsr~~~~~vd~~sY~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 163 GSCSRALAREVDLKDYEDQQKQLEQVIAK 191 (562)
T ss_dssp GTBSCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred ccccchheeecchHHHHHHHHHHHHHhhc
Confidence 46766666543 23388888888887543
No 11
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=53.95 E-value=66 Score=28.28 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHhhHhHHHHHHHHHHHHHHHHHH
Q 001240 189 GMNLVRELEKDLKVANVICMNGRRHITSSINEVSR---DLIVNTNSKKKQALLDMLPILTELCH 249 (1116)
Q Consensus 189 am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~---sL~Il~~~Rkrq~L~~ll~~L~~Ik~ 249 (1116)
-|.+|.+|++++...-......|.+|..+...+-. ...-....+|+.-...+-.+|..++.
T Consensus 3 ~M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkr 66 (78)
T 2ic6_A 3 HMSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKR 66 (78)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999888889999999999877642 46665677777888888888777754
No 12
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=53.07 E-value=3.3e+02 Score=31.75 Aligned_cols=24 Identities=17% Similarity=-0.047 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 001240 165 LAQLDRVSELLSRQVMEHHEVMVK 188 (1116)
Q Consensus 165 ~~qld~V~~~Ls~~V~en~~~F~~ 188 (1116)
...+..+...|...|.+.-..|.+
T Consensus 94 a~~H~~~a~~L~~~v~~~l~~~~~ 117 (486)
T 3haj_A 94 SELHLEVKASLMNDDFEKIKNWQK 117 (486)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344555555555555555444443
No 13
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=45.18 E-value=2.4e+02 Score=27.98 Aligned_cols=103 Identities=11% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHHHHhHHHHHHhcchhhhHHHHHhhhhhhhhHHHHHHHHHH-HHHH-cChhhHHHHhhhccccccccCccccchHHHH
Q 001240 900 ARMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHIHKTT-ARLL-LHIDGYVDRISNAKWEVKELGLEHNGYVDLL 977 (1116)
Q Consensus 900 a~~l~~l~p~L~~~Lp~~~~l~~Fy~qtv~~~~dLr~~iy~~v-a~~~-l~~~~~~~~ia~vkWdvkei~~~hs~YVD~L 977 (1116)
...++.++|.++..++. +++.||.+.. ..|+++..+-..- ..++ -....+...+-...|| +.|+...
T Consensus 48 ~~~l~~~~p~l~~~~~~--ivd~FY~~l~-~~pe~~~~f~~~~~~~rLk~~q~~~~~~l~~g~~d--------~~y~~~~ 116 (178)
T 1or4_A 48 LYVLEQLQPLIQENIVN--IVDAFYKNLD-HESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVID--------DEFIEKR 116 (178)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHT-TSHHHHHHHHHHCCHHHHHHHHHHHHHHTTSSCEE--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHh-cCHHHHHHhCCchHHHHHHHHHHHHHHHHhCCCCC--------HHHHHHH
Confidence 35677777888888875 8999999876 6788886554321 1111 1122223333333332 3566544
Q ss_pred HHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 001240 978 LGEFKHYKTRLAHGGIHKEVQDLLLEYGVEIVAETLIEGL 1017 (1116)
Q Consensus 978 l~e~~~f~~rL~~~~ip~~~~~~lw~~~i~~~~~~Lvegf 1017 (1116)
. .+..-+.+ ++||++-....+..+...+..+|.+..
T Consensus 117 ~-~IG~~H~~---igi~p~~y~~~~~~v~~~L~~~l~~~~ 152 (178)
T 1or4_A 117 N-RIASIHLR---IGLLPKWYMGAFQELLLSMIDIYEASI 152 (178)
T ss_dssp H-HHHHHHHH---TTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHH---hCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 22333333 479988887766666666666666554
No 14
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=42.27 E-value=78 Score=28.85 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHhhHhHHHHHHHHHHHHHHHHHH
Q 001240 189 GMNLVRELEKDLKVANVICMNGRRHITSSINEVSR---DLIVNTNSKKKQALLDMLPILTELCH 249 (1116)
Q Consensus 189 am~~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~---sL~Il~~~Rkrq~L~~ll~~L~~Ik~ 249 (1116)
-|.+|.+|++++...-......|.+|..+...+-. .+.-....+|+.-...+-.+|..++.
T Consensus 3 ~M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr 66 (96)
T 2ic9_A 3 HMSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKR 66 (96)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888889999999877642 46666677777888888888877754
No 15
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=39.34 E-value=9.6 Score=33.26 Aligned_cols=16 Identities=38% Similarity=0.854 Sum_probs=13.4
Q ss_pred hhhHHHHHHhCCCCCH
Q 001240 1068 ETEYVHWAAAHPEYTK 1083 (1116)
Q Consensus 1068 e~el~~Wi~~h~eYs~ 1083 (1116)
-.+|++|+++|++|+.
T Consensus 46 ~KdL~dWLrqhP~y~v 61 (80)
T 2ckc_A 46 NKDLVEWLKLHPTYTV 61 (80)
T ss_dssp HHHHHHHHHHCTTEEE
T ss_pred ccCHHHHHHHCCCcEE
Confidence 4599999999999863
No 16
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=31.34 E-value=1.2e+02 Score=30.96 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHhhHHHHHHHHhc-CCHHH----HHHHHHHHHHHHHhcCCCc
Q 001240 248 CHACDMQLALESLVEE-GNYCK----AFQVLSEYLQLLDSYSQLS 287 (1116)
Q Consensus 248 k~l~~~q~~Lq~lLee-~dY~~----AI~l~~e~q~vl~~l~~~~ 287 (1116)
.++..+|++|+.++++ +|=.+ .+++--+.++++..|..+.
T Consensus 114 ~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~ 158 (186)
T 1oxz_A 114 QRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLV 158 (186)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4566779999999964 33333 4555555677777777663
No 17
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=30.95 E-value=1.1e+02 Score=29.60 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHhcchhhhHHHHHhhhhhhhhHHHHHH
Q 001240 901 RMLHRSRTRLQSMLLQNTAIEDFYVNLVDSVPDLIEHI 938 (1116)
Q Consensus 901 ~~l~~l~p~L~~~Lp~~~~l~~Fy~qtv~~~~dLr~~i 938 (1116)
..++.+.|.++..++. +++.||.+.. ..|+++..+
T Consensus 19 ~~l~~~~p~l~~~~~~--i~~~FY~~l~-~~pe~~~~f 53 (162)
T 2w31_A 19 ELLGSLFPLAETNKER--LADQFYDYLL-GIPETAEFL 53 (162)
T ss_dssp HHHHHTHHHHHHTHHH--HHHHHHHHHH-TSHHHHGGG
T ss_pred HHHHHhHHHHHHHHHH--HHHHHHHHHH-cCHHHHHHH
Confidence 5577788888887765 8999999866 778887643
No 18
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=28.93 E-value=1.9e+02 Score=27.78 Aligned_cols=78 Identities=9% Similarity=0.141 Sum_probs=52.7
Q ss_pred HHHHhcCCH-HHH---HHHHHHHHHHHHhcCCCcch---hhhhHHHHHHHHHHHHHHHHHHHhhhhcccchhhHhHHHHH
Q 001240 258 ESLVEEGNY-CKA---FQVLSEYLQLLDSYSQLSAI---QEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAY 330 (1116)
Q Consensus 258 q~lLee~dY-~~A---I~l~~e~q~vl~~l~~~~c~---~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy 330 (1116)
+..+++||+ .++ -..+.+|+.++.+|..-=-+ .++..+|..++.=+..+| .-+.+ | ...+-+..
T Consensus 37 ~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~sLd~e~GgeiA~nL~~LY~y~~~~L-An~~~-----d---~~~l~ev~ 107 (130)
T 1orj_A 37 IEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAKNLDTIYTIILNTL-VKVDK-----T---KEELQKIL 107 (130)
T ss_dssp HHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHH-HCTTC-----C---HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHH-hcccC-----C---HHHHHHHH
Confidence 355679999 888 88899999998665421122 489999999999998888 33222 3 34455555
Q ss_pred HhhhhhhhHHHHHH
Q 001240 331 ALIGDVSGLAEKIQ 344 (1116)
Q Consensus 331 ~LLgk~~~~~d~l~ 344 (1116)
.+|..+.+.++++.
T Consensus 108 ~ll~~lreaW~~i~ 121 (130)
T 1orj_A 108 EILKDLREAWEEVK 121 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666555555443
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=28.39 E-value=1.3e+02 Score=27.35 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc-CccCCCC-HHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 001240 528 LRRGCKNLWQLTTSRVTVLIFS-AAVCSTS-IHQFLRNYEDLNVFILAGEAFCGIEAVEFREKLKTVCENYFVAFHR 602 (1116)
Q Consensus 528 L~~~~~~iw~~~q~rv~~lL~s-~~l~~ls-~~qFl~vl~~v~~Fi~~GE~fcG~~s~~Lr~~l~~Qs~~Yf~~fH~ 602 (1116)
+...+..-|...+.+...| ++ ++-..-+ .+.|-.+...+++|++.+.++- .-|+..|+.+.+.|..+.|.
T Consensus 21 F~d~Lq~~~~~L~~~f~~L-~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~v----p~L~~~i~vle~~~~~~~~~ 92 (94)
T 3fx7_A 21 FKELLREEVNSLSNHFHNL-ESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQI----AWLKERIRVLEEDYLEHHHH 92 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhcc-chHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHh----HHHHHHHHHhHHHHHHhccc
Confidence 3334455566666666665 31 1111111 2478888889999999888764 45999999999999998774
No 20
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=27.00 E-value=6.4e+02 Score=27.41 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHhhhhhhhHHHH
Q 001240 263 EGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEK 342 (1116)
Q Consensus 263 e~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~ 342 (1116)
..+|..+|+-+...+.- | ..-+..+-..||++-+.-...|...|..+|..++.... ...++
T Consensus 203 ~~~Y~~~l~~~n~~~~~---y--~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~~~~~~~~--------------~~~~~ 263 (320)
T 3m3w_A 203 KTQYEQTLAELNRYTPR---Y--MEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSS--------------DKFHE 263 (320)
T ss_dssp HHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGC--------------HHHHH
T ss_pred HHHHHHHHHHHHhhhHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc--------------hhHHH
Confidence 56777777777665532 3 12345556666776666666777777665554432111 22344
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHh
Q 001240 343 IQSFFMQEVIS-ETHSVLKSIVLE 365 (1116)
Q Consensus 343 l~~~F~~~i~~-~~~~vi~~~v~~ 365 (1116)
.+..+..++.. .+..+|..|+..
T Consensus 264 ~~e~~~~~i~~id~~~Di~~fi~~ 287 (320)
T 3m3w_A 264 LHRDLQQSIEAASDEEDLRWWRST 287 (320)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh
Confidence 55555555554 345667777664
No 21
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=26.00 E-value=2.5e+02 Score=30.26 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhc-ccCCHH-------------------HHHHHHHHHHHHHhhccccCCCCC------Ccc
Q 001240 1000 LLLEYGVEIVAETLIEGLSRV-KRCTDE-------------------GRALMSLDLQVLINGLQHFVPVNV------KPK 1053 (1116)
Q Consensus 1000 ~lw~~~i~~~~~~Lvegfs~v-kKCs~e-------------------GRalMqlD~q~l~~~le~l~~~~~------~p~ 1053 (1116)
.+|+.|-.++....-+=..++ ++|-.- |--+|.||.+.|...|-.|....+ .|.
T Consensus 23 Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~~~~~~~~~~t 102 (271)
T 3ns4_A 23 YKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLRENT 102 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCSCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHcccccccccccCCCc
Confidence 368877776544333333446 777655 999999999999999877764322 231
Q ss_pred ------------hHHHHHHHHhhccChhhHHHHHHhC----CC-CCHHHHHHHHHHHhhhccCCHHHHHHHHHHH
Q 001240 1054 ------------LQIVETFIKAYYLPETEYVHWAAAH----PE-YTKSQILGLVNLVAAMKGWKRKTRLEILEKI 1111 (1116)
Q Consensus 1054 ------------~~~Ve~YIKAyYl~e~el~~Wi~~h----~e-Ys~~ql~~Lv~~~~~~~~~~kK~r~~ll~~i 1111 (1116)
..-+|..+|.---|.+--+.++.+. ++ -+..-..-++.+- |..|.+-..++.+++-
T Consensus 103 s~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LK--Gv~wdl~~wk~~~~~f 175 (271)
T 3ns4_A 103 SYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALK--GIPWDLALWKKMWSAY 175 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHH--TCCSCHHHHHHHHHHH
T ss_pred ccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 2334677777777655444444332 45 5555544455432 2456777777777654
No 22
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.83 E-value=4.6e+02 Score=27.51 Aligned_cols=49 Identities=10% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcCCCcchhhhhHHHHH
Q 001240 250 ACDMQLALESLVEEGNYCKAFQVLSEYLQLL--DSYSQLSAIQEMSRGVEV 298 (1116)
Q Consensus 250 l~~~q~~Lq~lLee~dY~~AI~l~~e~q~vl--~~l~~~~c~~~L~~~Lqe 298 (1116)
..++...+..|..-|+-..|.+++++++... ...+++.+-.++..=+.+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~ 141 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQ 141 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 4556667777888899999999999988775 334555444444443333
No 23
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=24.33 E-value=6.5e+02 Score=28.24 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCC----CcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcccchhhHhHHHHHHhhhhhhhHHHHHHHHH
Q 001240 272 VLSEYLQLLDSYSQ----LSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFF 347 (1116)
Q Consensus 272 l~~e~q~vl~~l~~----~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F 347 (1116)
.+.+-......|-+ -+..+.|..-+++. .|.+.++..+.++....+.+++..+..-|.|+.++.+-.+.+...|
T Consensus 237 rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~--LI~~h~~~ll~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~ 314 (391)
T 2wzk_A 237 KLKEEEKRALRYLETRRECNSVEALMECCVNA--LVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDL 314 (391)
T ss_dssp HHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHH--HTGGGHHHHHTTHHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHH
Confidence 34444444555644 33455555555442 2345555555543334667789999999999999877677788888
Q ss_pred HHHHHHHHHHHHH
Q 001240 348 MQEVISETHSVLK 360 (1116)
Q Consensus 348 ~~~i~~~~~~vi~ 360 (1116)
.+.|...-.++|.
T Consensus 315 ~~~I~~~G~~~v~ 327 (391)
T 2wzk_A 315 EEHIISAGLADMV 327 (391)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777766555543
No 24
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=23.82 E-value=7.2e+02 Score=27.89 Aligned_cols=165 Identities=12% Similarity=0.134 Sum_probs=89.9
Q ss_pred HHHhHHHH-HHHHHHHhHHHHHHhcchhh----hHHHHHhhhhhhhhHH----HHHHHHHHHHHHcC--hhhHHHHhhhc
Q 001240 891 AAADTVSL-VARMLHRSRTRLQSMLLQNT----AIEDFYVNLVDSVPDL----IEHIHKTTARLLLH--IDGYVDRISNA 959 (1116)
Q Consensus 891 VA~ESl~f-la~~l~~l~p~L~~~Lp~~~----~l~~Fy~qtv~~~~dL----r~~iy~~va~~~l~--~~~~~~~ia~v 959 (1116)
++.+++.. +..++..++|++..+...+- .++.+-....+.++|+ +.+.|..++..+.+ +..|+..|.+
T Consensus 186 l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~- 264 (399)
T 2fji_1 186 VAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF- 264 (399)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTCCHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhcCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 66666664 46677889999988775441 3333333333333443 34566666655544 3456666663
Q ss_pred cccccccCccccchHHHHHHHHHHHHhhhccCCCChHH----HHHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Q 001240 960 KWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIHKEV----QDLLLEYGVEIVAETLIEGLSRVKRCTDEGRALMSLDL 1035 (1116)
Q Consensus 960 kWdvkei~~~hs~YVD~Ll~e~~~f~~rL~~~~ip~~~----~~~lw~~~i~~~~~~Lvegfs~vkKCs~eGRalMqlD~ 1035 (1116)
+=-++-. .....+.+.+|+..+..-+...+-.... ...-|.. +
T Consensus 265 ~~~~~~~---~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~------------------------------l 311 (399)
T 2fji_1 265 EHSFKNK---NNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTV------------------------------M 311 (399)
T ss_dssp CCCCCCG---GGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHH------------------------------H
T ss_pred CCCCCch---hHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHH------------------------------H
Confidence 2222211 3466777777766554444311100000 0111100 2
Q ss_pred HHHHhhccccCCCCCCcc-hHHHHHHHHhhc-cChhhHHHHHHhCCCCCHHHHHHHHHHHh
Q 001240 1036 QVLINGLQHFVPVNVKPK-LQIVETFIKAYY-LPETEYVHWAAAHPEYTKSQILGLVNLVA 1094 (1116)
Q Consensus 1036 q~l~~~le~l~~~~~~p~-~~~Ve~YIKAyY-l~e~el~~Wi~~h~eYs~~ql~~Lv~~~~ 1094 (1116)
.+|.. |. ..+... ..++.++++.|. ++.+.++..+.-....+..+...+++.+-
T Consensus 312 ~~l~~-L~----~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k~ll~~~~ 367 (399)
T 2fji_1 312 EFFMD-LS----CEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQAT 367 (399)
T ss_dssp HHHHH-HH----HSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred HHHHH-hc----CCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 22222 22 112122 446777788888 78888888888766799999999998873
No 25
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.72 E-value=3.9e+02 Score=24.91 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhHhhHhHHHHHHHHHHHHHHHHHH
Q 001240 192 LVRELEKDLKVANVICMNGRRHITSSINEVSR---DLIVNTNSKKKQALLDMLPILTELCH 249 (1116)
Q Consensus 192 ~I~eL~~dL~~a~~~~k~~R~~L~~a~~~vt~---sL~Il~~~Rkrq~L~~ll~~L~~Ik~ 249 (1116)
.|.+|++++...-......|.+|..+...+-. .++-....+|+.....+-.+|..++.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKr 83 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKR 83 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777666666667779999999877642 46655667777888888888777754
No 26
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=21.31 E-value=7.4e+02 Score=26.15 Aligned_cols=51 Identities=16% Similarity=0.323 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001240 263 EGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRTLQKLDSLLLGVCQEF 318 (1116)
Q Consensus 263 e~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i~~~Ld~~L~~~c~~F 318 (1116)
..+|..+|+-+...+.- | ..-+..+-..||++-+.-...|...|...|...
T Consensus 190 ~~~Y~~~v~~~n~~~~~---~--~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~ 240 (290)
T 3i2w_A 190 REKYEQAIAEITKYNSV---Y--IEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCL 240 (290)
T ss_dssp HHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777666543 3 233555556667766666667777776655543
No 27
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=21.14 E-value=8.6e+02 Score=26.84 Aligned_cols=183 Identities=10% Similarity=0.085 Sum_probs=90.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH---HHHHhhhh-hhhHhhHhHH-----H
Q 001240 175 LSRQVMEHHEVMVKGMNLVRELEKDLKVANVI-----------CMNGRRHIT---SSINEVSR-DLIVNTNSKK-----K 234 (1116)
Q Consensus 175 Ls~~V~en~~~F~~am~~I~eL~~dL~~a~~~-----------~k~~R~~L~---~a~~~vt~-sL~Il~~~Rk-----r 234 (1116)
+-+.+.+.++.|-.+|.-|+.+=..|.+..+. ..-=|+.+- .....+.. -|..+.+.|. +
T Consensus 84 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~ 163 (364)
T 4eoz_B 84 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDR 163 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 44556666777777777777776666655322 011122221 12222222 2344444332 3
Q ss_pred HHHHHHHHHHHHHH--------------HHHhhH----HHHHHHHhcCCHHH----HHHHHHHHHHHHHhcCCCcchhhh
Q 001240 235 QALLDMLPILTELC--------------HACDMQ----LALESLVEEGNYCK----AFQVLSEYLQLLDSYSQLSAIQEM 292 (1116)
Q Consensus 235 q~L~~ll~~L~~Ik--------------~l~~~q----~~Lq~lLee~dY~~----AI~l~~e~q~vl~~l~~~~c~~~L 292 (1116)
..+..+...|..+. .|..+. ..-+.++++.+.+. |.+.+.+-......|-+-+..+.|
T Consensus 164 ~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l 243 (364)
T 4eoz_B 164 GAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPI 243 (364)
T ss_dssp HHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHH
Confidence 44555555554431 111221 23334554443322 222233333333445333334444
Q ss_pred hHHHHHHHHHHHHHHHHHHH----hhhhcccchhhHhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001240 293 SRGVEVWLGRTLQKLDSLLL----GVCQEFKEEAYINVVDAYALIGDVSGLAEKIQSFFMQEVISETHSVL 359 (1116)
Q Consensus 293 ~~~Lqe~l~~i~~~Ld~~L~----~~c~~Fd~~~Y~~l~eAy~LLgk~~~~~d~l~~~F~~~i~~~~~~vi 359 (1116)
..-+++. .|.+.++..+. .+....+.+++..+..-|.|+.++..-.+.+...|.+.|...-.++|
T Consensus 244 ~~~~e~~--LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv 312 (364)
T 4eoz_B 244 VKVVERE--LISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALV 312 (364)
T ss_dssp HHHHHHH--HTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHH--HHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4444332 23355555553 33334778889999999999999987777787777777655444443
No 28
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=20.90 E-value=5.6e+02 Score=25.34 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=41.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCc-chhhhhHHHHHHHHHHHH---HHHHHHHhhhhcccchhhHhHH
Q 001240 259 SLVEEGNYCKAFQVLSEYLQLLDSYSQLS-AIQEMSRGVEVWLGRTLQ---KLDSLLLGVCQEFKEEAYINVV 327 (1116)
Q Consensus 259 ~lLee~dY~~AI~l~~e~q~vl~~l~~~~-c~~~L~~~Lqe~l~~i~~---~Ld~~L~~~c~~Fd~~~Y~~l~ 327 (1116)
.+|..++. +|+..+..+...+..+..+. -+..+...|.+.+..+.+ .|...+.. ..|||.+...|.
T Consensus 59 ~~L~~~e~-~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~--le~DP~rL~~ie 128 (175)
T 4abx_A 59 ELLSDGDL-NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEG--SAADPEALDRVE 128 (175)
T ss_dssp HHHTTSSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CCCCHHHHHHHH
T ss_pred HHHhCCcc-hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHH
Confidence 44555442 68899999999988766653 467777777666555543 33333333 268887655543
No 29
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=20.32 E-value=3.5e+02 Score=30.19 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=34.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHH
Q 001240 259 SLVEEGNYCKAFQVLSEYLQLLDSYSQLSAIQEMSRGVEVWLGRT 303 (1116)
Q Consensus 259 ~lLee~dY~~AI~l~~e~q~vl~~l~~~~c~~~L~~~Lqe~l~~i 303 (1116)
..+..++|.+|++++...-..+-+.++..|-.+|..-+-+.+.+-
T Consensus 44 Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~ 88 (336)
T 3lpz_A 44 RYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQA 88 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 455677778888887777777777899999999988777766654
Done!