Query 001241
Match_columns 1116
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 19:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.5 3E-07 6.6E-12 110.6 66.1 148 125-279 251-401 (880)
2 KOG0161 Myosin class II heavy 99.4 9.7E-06 2.1E-10 105.1 78.8 369 342-725 1119-1531(1930)
3 PRK02224 chromosome segregatio 99.3 2.2E-05 4.7E-10 94.9 71.8 93 109-205 148-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.2 5.8E-05 1.3E-09 96.0 79.0 77 127-203 396-472 (1311)
5 TIGR00606 rad50 rad50. This fa 99.2 0.00011 2.3E-09 93.6 73.4 77 170-247 576-652 (1311)
6 PRK03918 chromosome segregatio 99.0 0.00027 5.8E-09 85.4 72.1 42 212-253 244-285 (880)
7 TIGR02168 SMC_prok_B chromosom 98.9 0.00057 1.2E-08 83.2 77.7 10 27-36 124-133 (1179)
8 PRK03918 chromosome segregatio 98.8 0.0016 3.5E-08 78.8 66.8 15 20-34 32-46 (880)
9 TIGR02168 SMC_prok_B chromosom 98.8 0.0019 4.1E-08 78.8 84.1 30 678-707 993-1022(1179)
10 KOG0161 Myosin class II heavy 98.7 0.0059 1.3E-07 80.5 82.4 282 36-328 835-1135(1930)
11 PRK01156 chromosome segregatio 98.6 0.0051 1.1E-07 75.4 66.0 49 679-727 682-730 (895)
12 COG1196 Smc Chromosome segrega 98.5 0.012 2.6E-07 74.8 80.8 93 54-148 216-311 (1163)
13 TIGR02169 SMC_prok_A chromosom 98.5 0.01 2.2E-07 73.2 80.6 16 25-40 120-135 (1164)
14 PF12128 DUF3584: Protein of u 98.5 0.015 3.2E-07 74.3 68.2 207 479-689 594-810 (1201)
15 PRK01156 chromosome segregatio 98.5 0.012 2.7E-07 72.2 73.1 58 653-710 670-727 (895)
16 TIGR02169 SMC_prok_A chromosom 98.4 0.014 3E-07 72.0 84.1 31 696-726 983-1013(1164)
17 COG0419 SbcC ATPase involved i 98.1 0.082 1.8E-06 65.8 69.9 87 178-264 274-366 (908)
18 KOG4674 Uncharacterized conser 98.0 0.15 3.3E-06 67.4 73.5 454 40-528 861-1382(1822)
19 COG1196 Smc Chromosome segrega 98.0 0.13 2.9E-06 65.7 74.3 190 25-218 122-342 (1163)
20 KOG1029 Endocytic adaptor prot 98.0 0.01 2.3E-07 72.1 31.3 217 347-587 316-566 (1118)
21 COG0419 SbcC ATPase involved i 97.8 0.2 4.4E-06 62.4 72.2 62 477-539 558-619 (908)
22 PF07888 CALCOCO1: Calcium bin 97.8 0.15 3.3E-06 61.0 41.0 44 684-727 409-452 (546)
23 PF10174 Cast: RIM-binding pro 97.8 0.21 4.5E-06 62.1 63.5 322 296-629 182-533 (775)
24 PF01576 Myosin_tail_1: Myosin 97.5 1.9E-05 4E-10 96.9 0.0 508 106-697 41-565 (859)
25 PF07888 CALCOCO1: Calcium bin 97.4 0.64 1.4E-05 55.9 41.2 96 488-587 353-448 (546)
26 KOG0250 DNA repair protein RAD 97.1 1.2 2.5E-05 57.0 33.6 107 442-548 357-464 (1074)
27 PF00261 Tropomyosin: Tropomyo 96.9 0.68 1.5E-05 49.6 26.1 178 227-417 57-234 (237)
28 PF12128 DUF3584: Protein of u 96.8 2.9 6.2E-05 54.4 72.1 86 489-574 675-765 (1201)
29 PF00261 Tropomyosin: Tropomyo 96.8 0.53 1.1E-05 50.4 24.1 61 233-293 91-151 (237)
30 PF10174 Cast: RIM-binding pro 96.7 2.7 5.9E-05 52.7 60.2 243 48-333 71-316 (775)
31 KOG4674 Uncharacterized conser 96.7 4.3 9.4E-05 54.7 76.5 453 47-523 575-1098(1822)
32 PF00038 Filament: Intermediat 96.6 1.6 3.5E-05 47.6 34.2 232 489-735 58-295 (312)
33 PRK11637 AmiB activator; Provi 96.5 0.97 2.1E-05 52.0 25.4 45 299-343 91-135 (428)
34 KOG0964 Structural maintenance 96.5 4 8.7E-05 52.1 34.8 300 205-521 172-489 (1200)
35 PRK11637 AmiB activator; Provi 96.5 2.1 4.5E-05 49.4 28.0 26 591-616 158-183 (428)
36 PRK12704 phosphodiesterase; Pr 96.5 0.1 2.2E-06 62.0 18.0 78 350-434 59-136 (520)
37 KOG0933 Structural maintenance 96.5 4.6 0.0001 51.7 32.6 274 250-548 679-979 (1174)
38 TIGR03319 YmdA_YtgF conserved 96.2 0.22 4.7E-06 59.2 18.0 75 350-431 53-127 (514)
39 PF08317 Spc7: Spc7 kinetochor 96.0 1.5 3.1E-05 49.3 22.5 166 397-568 127-292 (325)
40 PRK00106 hypothetical protein; 96.0 0.54 1.2E-05 56.4 20.0 74 351-431 75-148 (535)
41 KOG0018 Structural maintenance 95.9 8.3 0.00018 49.8 31.9 95 491-588 302-399 (1141)
42 PF01576 Myosin_tail_1: Myosin 95.8 0.0026 5.6E-08 78.7 0.0 221 45-272 202-429 (859)
43 PHA02562 46 endonuclease subun 95.7 5.8 0.00013 46.4 27.6 90 455-544 307-396 (562)
44 PRK04863 mukB cell division pr 95.5 15 0.00032 49.5 42.9 146 127-277 232-398 (1486)
45 PRK12704 phosphodiesterase; Pr 95.4 0.21 4.5E-06 59.4 13.8 63 359-424 57-119 (520)
46 PRK00106 hypothetical protein; 95.2 0.84 1.8E-05 54.9 18.0 12 896-907 476-487 (535)
47 TIGR03319 YmdA_YtgF conserved 95.2 0.26 5.7E-06 58.5 13.8 70 359-431 51-120 (514)
48 KOG0977 Nuclear envelope prote 95.2 11 0.00023 46.0 29.4 311 130-499 68-384 (546)
49 PHA02562 46 endonuclease subun 94.9 10 0.00022 44.5 34.1 99 434-539 307-405 (562)
50 PF12072 DUF3552: Domain of un 94.4 0.86 1.9E-05 48.0 13.6 70 356-425 61-130 (201)
51 PF05701 WEMBL: Weak chloropla 94.3 16 0.00034 44.0 47.8 147 423-587 282-428 (522)
52 KOG0996 Structural maintenance 94.0 28 0.00061 45.8 41.5 338 236-581 269-612 (1293)
53 KOG1029 Endocytic adaptor prot 94.0 24 0.00051 44.8 29.8 118 439-576 316-433 (1118)
54 PF13851 GAS: Growth-arrest sp 93.0 15 0.00032 39.3 20.1 143 480-639 22-168 (201)
55 COG1340 Uncharacterized archae 92.3 25 0.00053 40.2 30.3 53 394-446 30-82 (294)
56 PF12072 DUF3552: Domain of un 92.3 3.7 8.1E-05 43.3 14.3 59 374-432 72-130 (201)
57 PF00038 Filament: Intermediat 91.6 24 0.00052 38.7 37.1 241 441-698 2-250 (312)
58 TIGR03185 DNA_S_dndD DNA sulfu 91.6 41 0.00088 41.3 33.7 32 105-138 160-195 (650)
59 PF05667 DUF812: Protein of un 91.2 46 0.001 41.2 24.7 216 254-489 320-544 (594)
60 PRK12705 hypothetical protein; 91.0 13 0.00027 45.1 18.4 60 357-423 61-120 (508)
61 PF05557 MAD: Mitotic checkpoi 90.2 2 4.3E-05 52.8 11.4 22 619-640 618-639 (722)
62 KOG0250 DNA repair protein RAD 89.2 88 0.0019 41.2 52.0 134 127-264 276-410 (1074)
63 PF05557 MAD: Mitotic checkpoi 88.6 4.7 0.0001 49.7 13.0 69 256-325 258-326 (722)
64 smart00787 Spc7 Spc7 kinetocho 88.1 54 0.0012 37.5 22.0 167 396-568 121-287 (312)
65 KOG0994 Extracellular matrix g 88.0 1.1E+02 0.0024 40.9 31.5 204 222-431 1520-1740(1758)
66 KOG0612 Rho-associated, coiled 86.6 1.3E+02 0.0028 40.3 47.9 38 964-1002 1127-1164(1317)
67 PF08317 Spc7: Spc7 kinetochor 86.5 56 0.0012 37.0 18.8 33 493-525 231-263 (325)
68 PRK04863 mukB cell division pr 85.7 1.6E+02 0.0034 40.4 48.5 30 333-362 505-534 (1486)
69 PF09726 Macoilin: Transmembra 85.3 1.2E+02 0.0025 38.5 26.5 54 357-418 543-597 (697)
70 TIGR03185 DNA_S_dndD DNA sulfu 84.7 1.1E+02 0.0024 37.7 36.3 47 658-704 422-468 (650)
71 PF12718 Tropomyosin_1: Tropom 83.8 55 0.0012 33.5 16.5 90 182-282 11-100 (143)
72 TIGR02680 conserved hypothetic 83.2 1.9E+02 0.004 39.2 29.5 118 62-194 711-830 (1353)
73 TIGR01005 eps_transp_fam exopo 83.0 96 0.0021 38.5 20.1 72 147-218 184-263 (754)
74 PRK09039 hypothetical protein; 82.9 94 0.002 35.8 18.7 114 116-233 65-178 (343)
75 PF13863 DUF4200: Domain of un 81.8 36 0.00078 32.8 12.9 89 364-462 12-100 (126)
76 PF05262 Borrelia_P83: Borreli 81.6 70 0.0015 38.9 17.6 70 405-474 189-258 (489)
77 KOG0977 Nuclear envelope prote 80.4 1.6E+02 0.0035 36.5 35.5 276 353-686 90-378 (546)
78 PF05622 HOOK: HOOK protein; 78.9 0.63 1.4E-05 56.9 0.0 155 191-359 192-357 (713)
79 PF05483 SCP-1: Synaptonemal c 78.8 2E+02 0.0043 36.7 67.7 487 193-709 216-770 (786)
80 PRK09039 hypothetical protein; 78.6 1.3E+02 0.0029 34.6 20.2 51 465-515 117-167 (343)
81 PF09755 DUF2046: Uncharacteri 78.4 1.4E+02 0.003 34.7 20.5 29 570-598 113-141 (310)
82 TIGR03007 pepcterm_ChnLen poly 78.2 1.5E+02 0.0032 34.9 18.8 34 152-185 156-189 (498)
83 TIGR01843 type_I_hlyD type I s 77.5 1.3E+02 0.0028 33.8 19.9 53 2-65 47-102 (423)
84 PF09755 DUF2046: Uncharacteri 77.0 1.5E+02 0.0033 34.4 24.1 165 504-672 32-200 (310)
85 PF06818 Fez1: Fez1; InterPro 76.9 80 0.0017 34.6 14.7 130 444-595 32-170 (202)
86 COG1579 Zn-ribbon protein, pos 76.9 1.3E+02 0.0029 33.7 21.9 90 505-598 95-184 (239)
87 KOG0976 Rho/Rac1-interacting s 76.1 2.5E+02 0.0055 36.5 45.2 370 304-725 92-471 (1265)
88 PF00769 ERM: Ezrin/radixin/mo 76.0 89 0.0019 34.5 15.1 79 443-521 12-90 (246)
89 PRK12705 hypothetical protein; 75.4 2.1E+02 0.0045 35.2 19.9 60 350-413 65-124 (508)
90 PF10473 CENP-F_leu_zip: Leuci 75.2 1.1E+02 0.0023 31.8 18.3 89 468-556 7-95 (140)
91 PF11559 ADIP: Afadin- and alp 74.3 1E+02 0.0022 31.0 14.5 76 396-474 71-146 (151)
92 PF09728 Taxilin: Myosin-like 73.7 1.7E+02 0.0037 33.4 34.9 66 643-708 230-309 (309)
93 PF04111 APG6: Autophagy prote 72.9 54 0.0012 37.3 12.9 16 685-700 166-181 (314)
94 COG4942 Membrane-bound metallo 72.0 2.3E+02 0.005 34.2 29.3 76 443-521 171-246 (420)
95 KOG4643 Uncharacterized coiled 70.8 3.6E+02 0.0079 35.9 48.0 131 396-526 413-550 (1195)
96 PF04111 APG6: Autophagy prote 70.3 63 0.0014 36.8 12.7 34 479-512 100-133 (314)
97 KOG0804 Cytoplasmic Zn-finger 68.6 1.3E+02 0.0028 36.6 15.0 109 492-623 347-455 (493)
98 COG1579 Zn-ribbon protein, pos 67.6 2.1E+02 0.0046 32.1 20.4 68 339-410 15-82 (239)
99 COG1340 Uncharacterized archae 66.0 2.6E+02 0.0056 32.4 28.7 25 615-639 132-156 (294)
100 PF00769 ERM: Ezrin/radixin/mo 65.6 1.5E+02 0.0032 32.9 14.0 121 162-282 3-123 (246)
101 COG4026 Uncharacterized protei 65.0 61 0.0013 36.3 10.8 83 480-566 118-205 (290)
102 PRK10246 exonuclease subunit S 64.7 4.5E+02 0.0097 34.7 72.3 146 107-254 164-331 (1047)
103 KOG0946 ER-Golgi vesicle-tethe 64.5 4.4E+02 0.0095 34.5 26.7 75 260-342 679-753 (970)
104 PF10146 zf-C4H2: Zinc finger- 64.0 1.8E+02 0.0039 32.2 14.2 77 628-712 4-80 (230)
105 PF12126 DUF3583: Protein of u 63.8 2.2E+02 0.0047 33.2 14.9 121 448-579 4-124 (324)
106 TIGR01000 bacteriocin_acc bact 63.8 1.3E+02 0.0028 35.4 14.0 220 3-230 64-315 (457)
107 COG2433 Uncharacterized conser 61.9 1.2E+02 0.0025 38.2 13.3 72 465-540 423-494 (652)
108 PLN03188 kinesin-12 family pro 61.1 3.6E+02 0.0077 36.7 18.0 151 111-287 1079-1250(1320)
109 KOG0018 Structural maintenance 61.0 5.5E+02 0.012 34.5 56.8 221 492-732 652-901 (1141)
110 PRK04778 septation ring format 60.6 4E+02 0.0086 32.7 43.6 411 211-727 89-521 (569)
111 PF10186 Atg14: UV radiation r 60.2 2.5E+02 0.0054 30.2 17.1 91 250-340 65-155 (302)
112 PF05701 WEMBL: Weak chloropla 59.8 4E+02 0.0086 32.5 48.5 66 259-327 169-234 (522)
113 PF10146 zf-C4H2: Zinc finger- 56.7 3E+02 0.0066 30.6 14.4 28 449-476 41-68 (230)
114 TIGR01843 type_I_hlyD type I s 54.9 3.5E+02 0.0077 30.4 19.1 49 200-248 131-179 (423)
115 PF09325 Vps5: Vps5 C terminal 54.0 2.8E+02 0.0062 29.0 16.2 65 170-237 162-235 (236)
116 TIGR03017 EpsF chain length de 53.7 4.1E+02 0.0088 30.8 19.4 126 146-272 160-299 (444)
117 PRK00409 recombination and DNA 53.1 1.9E+02 0.0041 37.0 13.7 35 141-175 142-176 (782)
118 KOG0612 Rho-associated, coiled 52.1 8E+02 0.017 33.6 54.9 29 685-714 1015-1043(1317)
119 PF03904 DUF334: Domain of unk 51.7 4E+02 0.0087 30.1 14.7 111 492-608 43-154 (230)
120 PRK00409 recombination and DNA 51.0 3.3E+02 0.0072 34.9 15.3 105 256-360 489-593 (782)
121 TIGR01005 eps_transp_fam exopo 50.5 6.1E+02 0.013 31.8 18.3 63 109-178 199-265 (754)
122 KOG1103 Predicted coiled-coil 50.2 5.2E+02 0.011 31.0 15.8 28 818-845 420-448 (561)
123 TIGR02977 phageshock_pspA phag 50.2 3.6E+02 0.0078 29.1 17.0 124 26-149 2-137 (219)
124 PF15066 CAGE1: Cancer-associa 49.5 6E+02 0.013 31.5 21.6 85 476-564 406-490 (527)
125 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.2 2.9E+02 0.0062 27.7 16.9 97 443-542 17-113 (132)
126 KOG0995 Centromere-associated 48.6 6.6E+02 0.014 31.7 40.7 27 437-463 260-286 (581)
127 PF09789 DUF2353: Uncharacteri 48.5 5.1E+02 0.011 30.4 23.0 206 436-657 2-228 (319)
128 TIGR02680 conserved hypothetic 48.5 8.9E+02 0.019 33.2 28.3 59 613-671 1085-1145(1353)
129 PTZ00266 NIMA-related protein 47.8 1.9E+02 0.0042 38.2 12.8 15 70-84 91-105 (1021)
130 PF09787 Golgin_A5: Golgin sub 47.6 6E+02 0.013 30.9 28.5 18 668-685 410-427 (511)
131 PF10473 CENP-F_leu_zip: Leuci 47.0 3.6E+02 0.0078 28.2 16.5 100 232-331 1-100 (140)
132 KOG0980 Actin-binding protein 47.0 8.4E+02 0.018 32.4 26.7 157 137-315 391-547 (980)
133 PF03962 Mnd1: Mnd1 family; I 46.7 3.1E+02 0.0066 29.4 12.2 34 449-482 68-101 (188)
134 PF11932 DUF3450: Protein of u 46.7 4.1E+02 0.0089 29.0 13.4 56 502-557 59-114 (251)
135 PF02841 GBP_C: Guanylate-bind 46.7 4.7E+02 0.01 29.4 15.5 9 126-134 41-49 (297)
136 PF10186 Atg14: UV radiation r 46.5 4.1E+02 0.0088 28.6 16.6 14 490-503 138-151 (302)
137 PRK06800 fliH flagellar assemb 45.8 65 0.0014 35.2 7.1 49 676-724 36-84 (228)
138 PF04871 Uso1_p115_C: Uso1 / p 45.7 3.5E+02 0.0076 27.7 14.3 37 472-508 78-114 (136)
139 PF12329 TMF_DNA_bd: TATA elem 45.7 1.9E+02 0.0042 26.8 9.2 67 452-528 3-69 (74)
140 PF03962 Mnd1: Mnd1 family; I 45.4 3.2E+02 0.0069 29.3 12.0 94 488-582 72-165 (188)
141 PF08614 ATG16: Autophagy prot 45.3 2.1E+02 0.0046 30.1 10.7 77 216-292 70-146 (194)
142 KOG3200 Uncharacterized conser 45.2 29 0.00062 37.6 4.4 21 808-828 69-89 (224)
143 KOG0804 Cytoplasmic Zn-finger 45.0 5.3E+02 0.011 31.8 14.7 75 389-466 373-447 (493)
144 PF14988 DUF4515: Domain of un 45.0 4.5E+02 0.0097 28.7 14.7 111 581-691 7-127 (206)
145 PF07106 TBPIP: Tat binding pr 42.9 2.5E+02 0.0054 28.9 10.6 32 443-474 72-103 (169)
146 TIGR01069 mutS2 MutS2 family p 41.4 4.7E+02 0.01 33.6 14.6 33 140-172 136-168 (771)
147 PRK11281 hypothetical protein; 41.2 1.1E+03 0.023 32.1 27.2 122 218-339 126-262 (1113)
148 PF05262 Borrelia_P83: Borreli 41.2 7.8E+02 0.017 30.4 16.2 37 248-284 185-221 (489)
149 KOG0962 DNA repair protein RAD 39.6 1.2E+03 0.026 32.2 70.4 136 603-751 992-1129(1294)
150 TIGR01069 mutS2 MutS2 family p 39.4 6.2E+02 0.014 32.6 15.2 100 255-354 483-582 (771)
151 PTZ00266 NIMA-related protein 38.7 3.1E+02 0.0068 36.4 12.7 7 132-138 129-135 (1021)
152 KOG4661 Hsp27-ERE-TATA-binding 38.6 4E+02 0.0086 33.7 12.6 20 585-604 681-700 (940)
153 KOG1853 LIS1-interacting prote 38.0 7E+02 0.015 28.9 15.5 82 190-278 50-131 (333)
154 PRK10698 phage shock protein P 38.0 5.8E+02 0.013 28.0 14.9 62 26-87 2-67 (222)
155 COG4372 Uncharacterized protei 37.9 8.4E+02 0.018 29.8 22.8 41 286-326 234-274 (499)
156 KOG1962 B-cell receptor-associ 37.7 2.4E+02 0.0051 31.4 9.9 57 504-571 156-212 (216)
157 PF06476 DUF1090: Protein of u 37.6 1.1E+02 0.0024 30.6 6.9 67 127-195 45-113 (115)
158 PRK15422 septal ring assembly 37.4 2.1E+02 0.0046 27.6 8.2 55 465-519 12-66 (79)
159 PF02841 GBP_C: Guanylate-bind 37.4 6.4E+02 0.014 28.3 13.8 8 424-431 199-206 (297)
160 KOG0994 Extracellular matrix g 36.8 1.3E+03 0.029 31.8 34.6 156 238-420 1595-1750(1758)
161 KOG1003 Actin filament-coating 36.7 6.4E+02 0.014 28.1 22.3 120 307-460 84-203 (205)
162 PF04012 PspA_IM30: PspA/IM30 36.6 5.5E+02 0.012 27.3 15.8 63 27-89 2-68 (221)
163 KOG2891 Surface glycoprotein [ 36.3 7.6E+02 0.016 28.9 13.7 92 252-349 345-438 (445)
164 PF09744 Jnk-SapK_ap_N: JNK_SA 35.5 5.6E+02 0.012 27.1 12.6 71 382-458 80-157 (158)
165 PRK11519 tyrosine kinase; Prov 34.7 8.9E+02 0.019 30.6 15.4 44 146-189 256-299 (719)
166 PRK09841 cryptic autophosphory 34.6 1.1E+03 0.023 30.0 17.0 35 285-319 351-385 (726)
167 KOG3859 Septins (P-loop GTPase 33.5 3.9E+02 0.0084 31.5 11.0 52 396-450 350-401 (406)
168 COG1842 PspA Phage shock prote 32.5 7.4E+02 0.016 27.6 12.7 106 130-248 29-134 (225)
169 PF14992 TMCO5: TMCO5 family 32.4 8.5E+02 0.018 28.3 13.6 64 353-417 37-100 (280)
170 PF04156 IncA: IncA protein; 32.3 5.8E+02 0.013 26.3 15.1 26 478-503 95-120 (191)
171 PF09789 DUF2353: Uncharacteri 32.2 9E+02 0.019 28.5 26.0 40 693-732 190-229 (319)
172 PRK15422 septal ring assembly 31.7 4.7E+02 0.01 25.3 9.5 58 483-544 6-63 (79)
173 KOG0249 LAR-interacting protei 31.4 1.3E+03 0.029 30.2 16.6 62 364-425 96-159 (916)
174 PRK10884 SH3 domain-containing 31.3 5E+02 0.011 28.4 11.0 22 490-511 144-165 (206)
175 KOG0995 Centromere-associated 31.3 1.2E+03 0.026 29.6 42.5 37 488-524 342-378 (581)
176 cd07647 F-BAR_PSTPIP The F-BAR 30.4 7.4E+02 0.016 27.0 18.2 48 560-608 168-215 (239)
177 PF11068 YlqD: YlqD protein; 30.2 5.6E+02 0.012 26.4 10.5 73 641-729 18-90 (131)
178 PF10234 Cluap1: Clusterin-ass 30.1 4.2E+02 0.0092 30.3 10.6 95 414-511 157-258 (267)
179 smart00502 BBC B-Box C-termina 29.7 4.6E+02 0.0099 24.3 11.3 38 591-628 49-86 (127)
180 PF05622 HOOK: HOOK protein; 29.7 18 0.00038 44.8 0.0 52 128-187 270-321 (713)
181 PF06428 Sec2p: GDP/GTP exchan 29.6 1.3E+02 0.0028 29.7 5.7 68 119-189 2-69 (100)
182 KOG0978 E3 ubiquitin ligase in 29.2 1.4E+03 0.03 29.7 48.6 118 327-452 434-564 (698)
183 TIGR01010 BexC_CtrB_KpsE polys 28.1 6.9E+02 0.015 28.5 12.0 30 258-287 274-303 (362)
184 PF10212 TTKRSYEDQ: Predicted 26.7 6.4E+02 0.014 31.5 11.9 112 193-310 403-514 (518)
185 PF15254 CCDC14: Coiled-coil d 26.5 1.2E+03 0.027 30.6 14.4 96 514-616 442-537 (861)
186 PF04880 NUDE_C: NUDE protein, 25.8 83 0.0018 33.5 4.0 20 494-513 26-45 (166)
187 TIGR03007 pepcterm_ChnLen poly 25.6 1.2E+03 0.025 27.7 19.1 63 116-181 166-228 (498)
188 PF06818 Fez1: Fez1; InterPro 25.4 9.7E+02 0.021 26.7 15.7 30 489-521 135-164 (202)
189 smart00806 AIP3 Actin interact 25.4 1.3E+03 0.029 28.2 15.7 126 132-259 155-307 (426)
190 PF10498 IFT57: Intra-flagella 25.3 9.5E+02 0.021 28.4 12.6 135 333-470 198-337 (359)
191 TIGR00634 recN DNA repair prot 25.2 1.3E+03 0.029 28.2 19.6 76 504-587 306-381 (563)
192 PF09730 BicD: Microtubule-ass 25.2 1.6E+03 0.035 29.2 17.1 61 506-574 121-181 (717)
193 KOG4657 Uncharacterized conser 24.7 1E+03 0.022 27.1 12.0 71 258-328 47-117 (246)
194 PF12037 DUF3523: Domain of un 24.4 1.1E+03 0.025 27.2 22.6 142 446-600 78-219 (276)
195 PRK10884 SH3 domain-containing 24.3 5.2E+02 0.011 28.3 9.7 52 241-292 118-169 (206)
196 TIGR03545 conserved hypothetic 24.3 5E+02 0.011 32.3 10.6 29 444-472 213-241 (555)
197 PF05529 Bap31: B-cell recepto 24.1 4.3E+02 0.0094 27.7 8.8 35 488-522 157-191 (192)
198 KOG0972 Huntingtin interacting 24.0 1.3E+03 0.027 27.5 13.5 155 332-492 204-372 (384)
199 PF15066 CAGE1: Cancer-associa 23.9 1.5E+03 0.032 28.3 20.7 41 420-460 388-428 (527)
200 COG3074 Uncharacterized protei 23.8 6.6E+02 0.014 24.2 9.4 64 484-569 7-70 (79)
201 smart00787 Spc7 Spc7 kinetocho 23.6 1.2E+03 0.026 27.1 18.3 35 441-475 202-236 (312)
202 KOG0980 Actin-binding protein 23.2 1.9E+03 0.042 29.4 30.4 59 413-471 425-483 (980)
203 PF05911 DUF869: Plant protein 23.2 1.8E+03 0.039 29.0 20.8 165 69-245 527-712 (769)
204 TIGR03545 conserved hypothetic 23.0 5E+02 0.011 32.3 10.3 92 416-518 165-256 (555)
205 PF12240 Angiomotin_C: Angiomo 22.3 1.1E+03 0.024 26.3 13.1 161 77-270 1-165 (205)
206 KOG2350 Zn-finger protein join 22.0 1.1E+02 0.0024 33.7 4.1 50 798-854 55-110 (221)
207 PF10498 IFT57: Intra-flagella 21.9 8.5E+02 0.018 28.8 11.4 99 152-281 222-320 (359)
208 PRK06800 fliH flagellar assemb 21.9 5.2E+02 0.011 28.7 8.9 67 643-719 38-104 (228)
209 PF06103 DUF948: Bacterial pro 21.3 3.1E+02 0.0068 25.4 6.4 53 124-176 25-77 (90)
210 KOG0413 Uncharacterized conser 21.1 2.9E+02 0.0062 36.9 7.9 46 875-926 1425-1481(1529)
211 COG4942 Membrane-bound metallo 20.6 1.6E+03 0.035 27.5 28.7 58 222-279 40-97 (420)
212 PF05667 DUF812: Protein of un 20.2 1.8E+03 0.039 28.0 28.9 311 125-470 272-591 (594)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.48 E-value=3e-07 Score=110.56 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=61.4
Q ss_pred HHHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhh
Q 001241 125 ECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201 (1116)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE 201 (1116)
+-+..++..+..+...+.+.. -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l 330 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443321 12233333333333334433333333333333333444444444455555555554
Q ss_pred hHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001241 202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279 (1116)
Q Consensus 202 ~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie 279 (1116)
+.++.....+..+.+.+.. .+...++.+.+.++.+.+...-+..-+..+......+..++.++++.+..++
T Consensus 331 ~~~~~~l~~~~~~~e~~~~-------~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 331 EECRVAAQAHNEEAESLRE-------DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444443433333333222 2333333333333334333333444444444444455555555555544444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.40 E-value=9.7e-06 Score=105.13 Aligned_cols=369 Identities=21% Similarity=0.295 Sum_probs=216.2
Q ss_pred hHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----HhhhhHHHHh
Q 001241 342 HESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERS 414 (1116)
Q Consensus 342 h~a~L~~KK~EFElElE~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ks 414 (1116)
..+.++..++++..+++....-+++-......-. .++|.++..+-..+.+.....+.+...+. +.=.++.+-+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777776644333333 35666666655555555544444444443 2334455666
Q ss_pred hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 001241 415 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL 494 (1116)
Q Consensus 415 k~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEI 494 (1116)
..++.....+......++.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-...-++++..-.++|..|+
T Consensus 1199 e~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6666666666666667777777777777777777777777776666 4566667777777777778888888889999
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001241 495 DVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (1116)
Q Consensus 495 d~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEs 574 (1116)
..+=.|.++....+..+-..+..|+.+-+.+ +.++. ..+..+-++..-+. ++..+.+.++.+|.-+.+.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle----~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLE----EETREKSALENALR----QLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888887766 33333 33444444443332 4555677777777766665
Q ss_pred hhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH-------------------------
Q 001241 575 LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS------------------------- 629 (1116)
Q Consensus 575 L~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~------------------------- 629 (1116)
...-.-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++..++.+|-.
T Consensus 1345 ~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1345 KNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5411100 11112233445555555555555555555555555554444443322
Q ss_pred ---------HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHH
Q 001241 630 ---------FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 697 (1116)
Q Consensus 630 ---------L~EREk~FEe---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL 697 (1116)
|..+-+.|+. +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|
T Consensus 1424 ~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1424 ERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233332 1222334455555566666666666666666655555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001241 698 MVQRQKLEEQRQLLHADREEIQAESERL 725 (1116)
Q Consensus 698 ~~ls~KLk~QRE~~~~ERe~fl~~vEkl 725 (1116)
..+-.-+-.....+...+..+-..++.+
T Consensus 1504 ~~~~~e~~k~v~elek~~r~le~e~~el 1531 (1930)
T KOG0161|consen 1504 EEQKDEGGKRVHELEKEKRRLEQEKEEL 1531 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444433
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.27 E-value=2.2e-05 Score=94.92 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=64.6
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001241 109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 188 (1116)
Q Consensus 109 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s 188 (1116)
...|.+=+.+.+|+.. +-.+...+.+.+..+..++-...+++......+.. ....++...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999833 35567778888888888888888888888777766 2245566667777777776666666
Q ss_pred HHhhhhHHHhhhhhHHH
Q 001241 189 SAERKLQEVVAREDDLS 205 (1116)
Q Consensus 189 ~aeRKL~eVEaRE~~Lr 205 (1116)
.+...+..+...-..+.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66655555554444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=5.8e-05 Score=95.95 Aligned_cols=77 Identities=8% Similarity=0.022 Sum_probs=53.5
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhH
Q 001241 127 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDD 203 (1116)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~ 203 (1116)
...|.+.++....+....+-..+.++..+..-+..+..+....+..+..+........+....+.++|..+..-++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~ 472 (1311)
T TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR 472 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHH
Confidence 34466777777777777777777777777777777777777777777777766666666666666666655544443
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=0.00011 Score=93.63 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=39.2
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001241 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1116)
Q Consensus 170 E~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q 247 (1116)
...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555555555555555555555555555555555 11244555555555555555555
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=99.01 E-value=0.00027 Score=85.36 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001241 212 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1116)
Q Consensus 212 ~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqR 253 (1116)
..+....+..+..-...+.+|+..+.+.+.++...+.+.++.
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~ 285 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554555556666666666666666655555443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.93 E-value=0.00057 Score=83.20 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=5.0
Q ss_pred HHHHHHHccC
Q 001241 27 IWKRLKEAGL 36 (1116)
Q Consensus 27 iWkr~~eaG~ 36 (1116)
+=..|..+|+
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3444555555
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.77 E-value=0.0016 Score=78.83 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=9.1
Q ss_pred CCCCcHHHHHHHHHc
Q 001241 20 SPLSDESIWKRLKEA 34 (1116)
Q Consensus 20 ~~~~d~~iWkr~~ea 34 (1116)
+++|-..+...+.=|
T Consensus 32 nG~GKStil~ai~~~ 46 (880)
T PRK03918 32 NGSGKSSILEAILVG 46 (880)
T ss_pred CCCCHHHHHHHHHHH
Confidence 556667776665543
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.76 E-value=0.0019 Score=78.81 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=14.9
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001241 678 MDRQRRDREWAELNNSIEELMVQRQKLEEQ 707 (1116)
Q Consensus 678 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 707 (1116)
.....+..+..++...++.|...-.++.+.
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~ 1022 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEA 1022 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555554443
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.69 E-value=0.0059 Score=80.53 Aligned_cols=282 Identities=22% Similarity=0.223 Sum_probs=147.1
Q ss_pred CChHHHhhhcHH--HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 001241 36 LDEVSIKRRDKA--ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 113 (1116)
Q Consensus 36 ~De~S~~rrD~~--aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKRE 113 (1116)
-+++-|..+|.. .|-..+.+-|+..=++--+|--++-|+-.++.....=+.-.+++++.+.|..+.-.-+=.++
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l---- 910 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL---- 910 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356666666543 34556666677777788888888888888888877777788888888888776544321111
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001241 114 ESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1116)
Q Consensus 114 EnLkKALgvEKqCVadLEKAL~emr~E~AeiK-----------------~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 176 (1116)
..+..-+..+..=.++|++-.+++..++.+.+ .+.+.++.....=+.+ ..+..+||-.+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke 986 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11112222222222334444444443333332 2222222222222222 22333333333
Q ss_pred hHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 001241 177 ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 256 (1116)
Q Consensus 177 eak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~ 256 (1116)
...+-+++| .+.-.|+.-+..-..|.+....+.+..+..+..+..++....+.+|.....+-.|...|..+..-...
T Consensus 987 kk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 987 KKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333322 22233444444445555555555566666666666666666666655555555555555555444455
Q ss_pred hHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001241 257 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1116)
Q Consensus 257 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~ 328 (1116)
..+-+..++.++-+|-.++.+++.....+....-.|..--+.+..-++++..-+....+-|+....|...|.
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666665554444444333333333444445555555555555665555555443
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.61 E-value=0.0051 Score=75.37 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=22.2
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001241 679 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 727 (1116)
Q Consensus 679 ~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ 727 (1116)
....+..+...++.+|..|...-..++++-+.+..+...+-.+++.++.
T Consensus 682 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~ 730 (895)
T PRK01156 682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555554444444444444444444444444433
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.51 E-value=0.012 Score=74.78 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=58.1
Q ss_pred HHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhH
Q 001241 54 AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASL 130 (1116)
Q Consensus 54 skLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadL 130 (1116)
-.|.+++..+++- +++.+-..+..+++++...+...+.- +......+.-.+...+.+-+.++..+..-.++...+
T Consensus 216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 293 (1163)
T COG1196 216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293 (1163)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666664 45556667777777777777766633 334444455556666666666766666666677766
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 001241 131 EKAVHEIRAESAETKVAA 148 (1116)
Q Consensus 131 EKAL~emr~E~AeiK~ts 148 (1116)
...+.++-.+.+.++-..
T Consensus 294 ~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 294 KEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665433
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.50 E-value=0.01 Score=73.16 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.3
Q ss_pred HHHHHHHHHccCChHH
Q 001241 25 ESIWKRLKEAGLDEVS 40 (1116)
Q Consensus 25 ~~iWkr~~eaG~De~S 40 (1116)
.++=..|...||+..+
T Consensus 120 ~~~~~~l~~~~~~~~~ 135 (1164)
T TIGR02169 120 SEIHDFLAAAGIYPEG 135 (1164)
T ss_pred HHHHHHHHHcCCCcCc
Confidence 3455568888986543
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.48 E-value=0.015 Score=74.34 Aligned_cols=207 Identities=14% Similarity=0.275 Sum_probs=149.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001241 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 558 (1116)
Q Consensus 479 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK 558 (1116)
++.+|..-...|.++++.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+........+..-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988888888888888888888887777777766666666677777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001241 559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 638 (1116)
Q Consensus 559 ~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE 638 (1116)
..+..-+..+...+..+..+-..|- .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776665553 455566666666666666566666666666666666666666665555554
Q ss_pred H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001241 639 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 689 (1116)
Q Consensus 639 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE 689 (1116)
+ ....+|.. |+- .-..++++++++..++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4 33344432 221 445567888889999999998888887766666666654
No 15
>PRK01156 chromosome segregation protein; Provisional
Probab=98.45 E-value=0.012 Score=72.15 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001241 653 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL 710 (1116)
Q Consensus 653 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~ 710 (1116)
.....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777777777666544455554444
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.44 E-value=0.014 Score=72.01 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001241 696 ELMVQRQKLEEQRQLLHADREEIQAESERLK 726 (1116)
Q Consensus 696 eL~~ls~KLk~QRE~~~~ERe~fl~~vEklK 726 (1116)
++...-..|.+|++.+...+..+...|+.++
T Consensus 983 ~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 983 EVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666666666666665
No 17
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.07 E-value=0.082 Score=65.78 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=40.2
Q ss_pred HHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhh------hhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhh
Q 001241 178 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 251 (1116)
Q Consensus 178 ak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~------E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LN 251 (1116)
..+++..+....+..+++.++.....+....--+.. +.+.....+....+.+..++.++......+.+.....+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444333332 23333333444444444444444444444444444444
Q ss_pred hhhHhhHhhHHHH
Q 001241 252 EREDHILSKLQEL 264 (1116)
Q Consensus 252 qREe~~~e~~~~l 264 (1116)
+...-+.++...+
T Consensus 354 ~~~~~~~~~~~~l 366 (908)
T COG0419 354 ELAKLLEERLKEL 366 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.02 E-value=0.15 Score=67.37 Aligned_cols=454 Identities=18% Similarity=0.217 Sum_probs=240.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHHh-------hh---hhccchhheeh-------------hhhh---hhHHHHHHHHHHHHH
Q 001241 40 SIKRRDKAALIAYIAKLETEIF-------EH---QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL 93 (1116)
Q Consensus 40 S~~rrD~~aLia~IskLE~Ely-------dY---QyNMGLLLiEk-------------KEwt---SK~EeLkqa~~eae~ 93 (1116)
+-.+.+.+-|-.+++.|++.|= .| +|||..-+.+. ..++ |+..++++.+-..+.
T Consensus 861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888752 11 34666555443 2333 445566778888888
Q ss_pred HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001241 94 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 173 (1116)
Q Consensus 94 ~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL 173 (1116)
+|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998888888888888777765544344456677777777777777778888888888887777766554444332
Q ss_pred hhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHH---HhchHHHHHHHHHHHHHHHHHhhhh
Q 001241 174 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL 250 (1116)
Q Consensus 174 ~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~q---Re~L~eweKkLqe~eeRL~e~q~~L 250 (1116)
-.+++..+.+... |..++........-|+.++..- .+.|.....-+......+.+.....
T Consensus 1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2333333333332 3333344444444444443221 2334444444444444444444444
Q ss_pred hhhhHhhHhhHHHHhHhHHHHH----HHhhcHH---HHHHHHhhhhhhhhHhHH--HhhhhHHHHHHHHHH--HHHhHHh
Q 001241 251 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK 319 (1116)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLE----e~kkkie---~~~~~Lk~ke~dl~~rl~--~l~~rEee~~~~~~~--Le~KEkE 319 (1116)
-++..-.-+..+-...+++-|+ ...+.|. ..+..|...=+.+....+ .++.-+.-...+... ---+|++
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence 4444333333333322222222 2222221 122222222222222222 111111111111110 1124555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 001241 320 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG 383 (1116)
Q Consensus 320 Ll~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~---------eeEle~K~~~~E-~rEv------el~ 383 (1116)
+..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..+. .+|- +..
T Consensus 1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555555555433322 22333444444455555555555 344555555554 2222 223
Q ss_pred hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 001241 384 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD 451 (1116)
Q Consensus 384 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~-------~L-----~~eKEel~~lK~d 451 (1116)
+-.+++ +.|..+.+++.-.=.-|..-++.|+..=....++=+.++.+.. .| ..|+.++.+++.+
T Consensus 1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 333333 3444444444433333333334444333333333333333222 12 2347788888888
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001241 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1116)
Q Consensus 452 lEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 528 (1116)
|......+++....|.+-... +.++|-++|+..|..-..+..+.++...|+.-+-+.+.-|.-.-++
T Consensus 1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887666666555444 4455578888888888888999999999999999999988876665
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.00 E-value=0.13 Score=65.72 Aligned_cols=190 Identities=22% Similarity=0.286 Sum_probs=102.7
Q ss_pred HHHHHHHHHccCCh--------------HHHhhhcHHHHHHHH----------HHHHHHHhhhhhccchhheehhhhhhh
Q 001241 25 ESIWKRLKEAGLDE--------------VSIKRRDKAALIAYI----------AKLETEIFEHQHHMGLLILEKKELASK 80 (1116)
Q Consensus 25 ~~iWkr~~eaG~De--------------~S~~rrD~~aLia~I----------skLE~ElydYQyNMGLLLiEkKEwtSK 80 (1116)
.||=.-|...|++. .+++..++..|++-+ .+.+..|-.=+=|+--+=.-..+...+
T Consensus 122 ~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~ 201 (1163)
T COG1196 122 KDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQ 201 (1163)
T ss_pred HHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888743 345777777777644 355667777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh----HH---HHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhh
Q 001241 81 YEQIKASAEAAELLQKHDRASHLS----AI---AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFA 153 (1116)
Q Consensus 81 ~EeLkqa~~eae~~lKREqaAhl~----AL---sEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLa 153 (1116)
++.|+.....|+..++-...-... .+ ....+.-+.+..+++-=..=+.++...+.+.-.++. ....++.
T Consensus 202 l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 277 (1163)
T COG1196 202 LEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIE----ELKSELE 277 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 888888888887765543322222 22 222222333333333222222223333332222222 2334555
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001241 154 EARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 218 (1116)
Q Consensus 154 EA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1116)
+...-+...+.....+-.++...+...+-+..........+.+...+...+.-.+..+.++....
T Consensus 278 e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555445454555554545555555555555555554544444444444444
No 20
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.01 Score=72.09 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=127.4
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 001241 347 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 417 (1116)
Q Consensus 347 ~~KK~EFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L 417 (1116)
|.|+-.|+ +|||.+|+-+++.-...+.+++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665 688888888888777777777666543 22333 3334555667777777666654332 223333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001241 418 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 485 (1116)
Q Consensus 418 KEkEksLkaeEK~--le~e-------k~~L~~eKEel~~lK---~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lr 485 (1116)
..+|-.-+-.||. ++-+ .+|...+.+.|-.+| ..++--+..|..+++++..--....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333322222221 1111 112222333333332 2333444444455555544443333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001241 486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 552 (1116)
Q Consensus 486 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~-------------~~ 552 (1116)
..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 35689999999999999999999988754 34444445555555444322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001241 553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (1116)
Q Consensus 553 E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe 587 (1116)
+-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77778888888999999999998888888777666
No 21
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.2 Score=62.42 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001241 477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 539 (1116)
Q Consensus 477 eeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I 539 (1116)
.++...+..+..+|+...+.++.-. ....+.++++..-..+...|..|.+.-..++......
T Consensus 558 ~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 558 KEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444444333 2223444444334444444555555555554444444
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.83 E-value=0.15 Score=60.97 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001241 684 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 727 (1116)
Q Consensus 684 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ 727 (1116)
.=+.+|-++.|.+|+.-=+-+++-.|+|..++..++..|++|..
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999998863
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.81 E-value=0.21 Score=62.10 Aligned_cols=322 Identities=19% Similarity=0.272 Sum_probs=192.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHHH
Q 001241 296 LVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAIK 360 (1116)
Q Consensus 296 l~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a-----RE~---~EIQKLldeh~a~L~~KK~EF-------ElElE~k 360 (1116)
...+.-.|-.+..++..|+.+|++...+-+.|-- ++. ..+|++|+.- +++...| |.|+...
T Consensus 182 ~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 182 LRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777788888899888666443322 222 3568887764 3444444 4555444
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHH
Q 001241 361 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 440 (1116)
Q Consensus 361 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~ 440 (1116)
+..++---. -+.-..++++.........|-. ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-+
T Consensus 258 ~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 258 RSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred Hhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 443321111 1222333344444444443321 333344456666666666666666666666667777777888888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001241 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520 (1116)
Q Consensus 441 eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~ 520 (1116)
--.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd- 412 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD- 412 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888899999999999999999999999999999999887665444455666666666555666666555543322111
Q ss_pred HHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 001241 521 EWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 588 (1116)
Q Consensus 521 EWE~LDEKRael~------------KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMeh 588 (1116)
..|++-++.|. -.++.-..+++.+..-+...+++.-.++..--+.|++++..++..-++|-..+ |
T Consensus 413 --~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-s 489 (775)
T PF10174_consen 413 --RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-S 489 (775)
T ss_pred --HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H
Confidence 11222222222 33333333444444444444444444444444667777777777777777655 6
Q ss_pred hhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001241 589 EHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS 629 (1116)
Q Consensus 589 Ers~~~eKiq~Erad~l~d~Emqkre---LE~~iqkRqEEiE~~ 629 (1116)
|+..-+.-++.+-+.+.-+.+-+..+ |+..+++.++++++-
T Consensus 490 Ek~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 490 EKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence 77777777777777776666555544 446676666666543
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.54 E-value=1.9e-05 Score=96.92 Aligned_cols=508 Identities=21% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 001241 106 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES 178 (1116)
Q Consensus 106 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAea 178 (1116)
+-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.++ |.--.+-++
T Consensus 41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~ 120 (859)
T PF01576_consen 41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA 120 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666666666666777777777777766444444333333333222222221 222234456
Q ss_pred HHHHHhcchhHHhhhh----HHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001241 179 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 254 (1116)
Q Consensus 179 k~AEa~Rk~s~aeRKL----~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqRE 254 (1116)
.+++.-++|+.+--.| ..+.---..|-+.+-.|..|.+....++..-=.....-+|.....+.-|.+.+.-+..-+
T Consensus 121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e 200 (859)
T PF01576_consen 121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE 200 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 6677777775543222 222222233334444444444444444433333334445566666666666666666666
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001241 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (1116)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~E 334 (1116)
..+++.......++.++.++...++.. ...+..|+. ....-+..|..+...|..-
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE---- 255 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE---- 255 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence 566655555555555555555444333 222222211 0011122233333222211
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHH
Q 001241 335 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411 (1116)
Q Consensus 335 IQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~ 411 (1116)
+ -.+..|..+.+..+.+++..+..++++-++|... +..-..+|..+-.+ -+.....+.+.+.+--+.|.
T Consensus 256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~ 327 (859)
T PF01576_consen 256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLE 327 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHH
Confidence 0 1345677788888888888888888887776542 22333333333222 23344445556666667777
Q ss_pred HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001241 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 488 (1116)
Q Consensus 412 ~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra---~~e~q~~qi~ee~E~LkiteeER~E~lrLQs 488 (1116)
.++..+.+.-....+.-..|+.-+..|+.+-+.+.. +|++..+ .++.+.++++.....++.- -.
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~ 394 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence 777777777777777777888888888877666654 5555444 5566666666544443322 13
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001241 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 568 (1116)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~ 568 (1116)
.+..+.|..-.....+..++-.|+.+.......++.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+..
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence 566677777777777888888888888777777777777777777777777655443333332 2222222111111111
Q ss_pred HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001241 569 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 648 (1116)
Q Consensus 569 krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~I 648 (1116)
+..++-+. +-+...|..+.-|+..|+.-+-++++.|.+|+..|++.|..=...|
T Consensus 474 ~~~leE~E--------------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l 527 (859)
T PF01576_consen 474 QEQLEEAE--------------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL 527 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence 12222111 2223455567778888888899999999999999998776544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHH
Q 001241 649 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 697 (1116)
Q Consensus 649 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL 697 (1116)
-+|..-+..|. +.|.++.-.|++++.+..+|.-.++..
T Consensus 528 ~~le~~LE~E~-----------k~r~~~~r~kkKLE~~l~eLe~~ld~~ 565 (859)
T PF01576_consen 528 ESLEAELEEER-----------KERAEALREKKKLESDLNELEIQLDHA 565 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332222 234444445555555544444333333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.36 E-value=0.64 Score=55.95 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001241 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (1116)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 567 (1116)
++.-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444567788888887776 68899988777777777655443 56778888888776665555
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 001241 568 HKRDVDSLNREREEFMNKMV 587 (1116)
Q Consensus 568 ~krelEsL~~ekEsF~~kMe 587 (1116)
.+.+-|.|..++-+.|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444443
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.09 E-value=1.2 Score=57.00 Aligned_cols=107 Identities=25% Similarity=0.258 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001241 442 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520 (1116)
Q Consensus 442 KEel~~lK~dlEK~ra~~e~q~~qi~ee~E~L-kiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~ 520 (1116)
++++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||++++.|...|-.|.++++..-..=+.
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333444444444444444444444444444 44555555544444556666666666666666666666666555555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001241 521 EWEMIDEKREELRKEAERVAVERVVVSK 548 (1116)
Q Consensus 521 EWE~LDEKRael~KEa~~I~eEre~lek 548 (1116)
|-+.+..+...|.+-...+..+=..+.+
T Consensus 437 e~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 437 EKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555655566666665555544444333
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.93 E-value=0.68 Score=49.60 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=86.3
Q ss_pred hchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHH
Q 001241 227 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 306 (1116)
Q Consensus 227 e~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~ 306 (1116)
+.|..-..+|.+.+.++-+..+.+..=|.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-+
T Consensus 57 erL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 57 ERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555556666666665555555554444444444444444444444444
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001241 307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 386 (1116)
Q Consensus 307 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 386 (1116)
+..++.+..-|.+|..+-..|-+=|-.+-+ -.+=+-.++.+-+.|..-|..=..-++--|..+...|
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~-------------~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEK-------------ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332221110 0111122222233333333333344444455556666
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001241 387 ESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1116)
Q Consensus 387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1116)
..+..-+-.|..--.+.+....+|+.-+..|
T Consensus 204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666555443
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.84 E-value=2.9 Score=54.35 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001241 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW----EMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 563 (1116)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW----E~LD-EKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~ 563 (1116)
.+++.......+...+..+...+++++..|..+- -.+. ++.+..+.-...+..+-+.+..-+.......+.++..
T Consensus 675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666666666555432 2222 4444445555566666667777777777777777777
Q ss_pred HHHHHHhhhhh
Q 001241 564 MRDQHKRDVDS 574 (1116)
Q Consensus 564 ~r~~~krelEs 574 (1116)
++.++..+|.+
T Consensus 755 le~~~~~eL~~ 765 (1201)
T PF12128_consen 755 LEQQYNQELAG 765 (1201)
T ss_pred HHHHHHHHHHh
Confidence 77777776644
No 29
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.81 E-value=0.53 Score=50.42 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 001241 233 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 293 (1116)
Q Consensus 233 eKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~ 293 (1116)
..++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 3344444555555555555555555555555555666666555555554444444444433
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.74 E-value=2.7 Score=52.67 Aligned_cols=243 Identities=22% Similarity=0.212 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHH
Q 001241 48 ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECI 127 (1116)
Q Consensus 48 aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCV 127 (1116)
.+-.-|..|..|| --|..++-|.-+...-.+-|+.+.. ++-++.-.-|=++-|=-+..| +
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------l 130 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------L 130 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------H
Confidence 4445566666666 6666666665554444555555555 444433222211111111111 1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001241 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1116)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRe 207 (1116)
..|-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..++ +..-.+.+.+.+.+.+++-..|+--
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le~l 198 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLESL 198 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2245677788888888888888877777777777765554431 1111122333333333333222211
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH-HHH-HHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001241 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHE-RLL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1116)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee-RL~-e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~L 285 (1116)
.+.++.....-|+ .....++-..+ ... -.|..|...+..|.+..+.+..++-++..++..++....--
T Consensus 199 -------le~~e~~~~~~r~---~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r 268 (775)
T PF10174_consen 199 -------LERKEKEHMEARE---QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR 268 (775)
T ss_pred -------HHHHHHHhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 1111111111111 00001100000 000 23555666666666666666666666666555544332211
Q ss_pred hhhhhhhhH-hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001241 286 NEEKSNLDL-TLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (1116)
Q Consensus 286 k~ke~dl~~-rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~ 333 (1116)
......+.. +...+..|-+ ++..+..|..|..||..++-+|......
T Consensus 269 ~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111011111 1111111111 6777777888888888888888766643
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.72 E-value=4.3 Score=54.69 Aligned_cols=453 Identities=20% Similarity=0.194 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhheehhhhh----------------hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001241 47 AALIAYIAKLETEIFEHQHHMGLLILEKKELA----------------SKYEQIKASAEAAELLQKHDRASHLSAIAEAR 110 (1116)
Q Consensus 47 ~aLia~IskLE~ElydYQyNMGLLLiEkKEwt----------------SK~EeLkqa~~eae~~lKREqaAhl~ALsEae 110 (1116)
..+-++|+.|++++-+---+.--|+=||..|. |..++..+... .+..+..-+...=+...|..
T Consensus 575 ~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~ 653 (1822)
T KOG4674|consen 575 NEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKR 653 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 35668899999988776666667777777662 11111111111 11111222222222333333
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh---hhhhhhhHHHHHHH-------HHhhhhHHHHHhhhhhhHHH
Q 001241 111 KREESLKKTLGVEKECIASLEKAVHEIRAESAETKV---AADSKFAEARCMVE-------NAQKKFAEAEAKLHAAESLQ 180 (1116)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~---tsesKLaEA~aLv~-------~~eeKslEvE~KL~aAeak~ 180 (1116)
++...|.+. +.+|.+-..+||.+.-..+. .|.-|+.-++--|+ .+.+.......=++..+...
T Consensus 654 ~~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 23444444555554443332 12223333333333 23344444555667777777
Q ss_pred HHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001241 181 AEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1116)
Q Consensus 181 AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-------~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqR 253 (1116)
..++--...+..++.-+++.=+.|+.+-..|. .|.+++....+.++..|...+-.....++....++.-++
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e-- 804 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCE-- 804 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 88888888888999999999888888877665 345555555555555555555444444444444444443
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHH----HhhhhHHHHHHHH-------HHHHHhHHhHHH
Q 001241 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV----SLLKREEAVIERE-------ASLQKKEQKLLV 322 (1116)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~----~l~~rEee~~~~~-------~~Le~KEkELl~ 322 (1116)
..+..++.+|..++++++....-++.-..+++.-+. .+..-....+.+. ..+.+.|..+..
T Consensus 805 --------~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 805 --------SRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445555556666555555544444333333322 2222223333333 333344444444
Q ss_pred HHHHHhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHH---HHHHHHHhhhhhhhhhHHHHHhhh
Q 001241 323 SQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIE---KKRRAWELRDLDLGQREESLLERE 393 (1116)
Q Consensus 323 leEKL~aRE~~EIQKLldeh---~a~L~~KK~EFElElE~k---rKs~eeEle---~K~~~~E~rEvel~h~Eekl~kRE 393 (1116)
|..+|. .+.++.+..+. .....-+-..|..++++- +..+-.... +=-.....-|.-|..+...+.+--
T Consensus 877 L~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 877 LEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 35666666665 233333334466655554 333322221 111222233333344444444444
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001241 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK 462 (1116)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk--------aeEK~---le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q 462 (1116)
+.++.+.+.+..+--.|+.++..|+..=..|. -.+++ +..+..-++.+..++.....+..+....+.+.
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~d 1033 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQND 1033 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333332211111 11221 12223333444444444443333333333333
Q ss_pred HHHHHHHHhhhhhhhhhh----hhHHH---HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001241 463 KKQVNCAKDKLEAMKSEA----GELSV---LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (1116)
Q Consensus 463 ~~qi~ee~E~LkiteeER----~E~lr---LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 523 (1116)
+.. ..+.+....+.- ..|.. .=.+|+++..+|-.+-..|-+.++.+...-..|++-|.
T Consensus 1034 l~~---~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~ 1098 (1822)
T KOG4674|consen 1034 LKT---ETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWS 1098 (1822)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchH
Confidence 222 222222222211 11111 22456777777777777777888877777888888885
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.55 E-value=1.6 Score=47.56 Aligned_cols=232 Identities=21% Similarity=0.340 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001241 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 565 (1116)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek---~~~~E~erLK~EK~~~r 565 (1116)
.|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.|.+-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 445677777777777777788888888888888887777777776666555533333222 23456677888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001241 566 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 643 (1116)
Q Consensus 566 ~~~krelEsL~~ekE-sF~~kMehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~ 643 (1116)
..|..++..|...-. .+-..|..- ...+..-+..=| ...+..+.+-+.++|..++.+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888876553 222222210 122222233333 3444445555555555555544444333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001241 644 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 722 (1116)
Q Consensus 644 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~fl~~v 722 (1116)
--..+.+ +..|+-.++.....|..+-.-+......|+.+..++....+. +......+......+..=|..+-.+.
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233444444444444444444444455555555555433332 22233334444444444455565666
Q ss_pred HHhhhhhhhHhHH
Q 001241 723 ERLKKLEDLKIAV 735 (1116)
Q Consensus 723 EklK~ckncg~~~ 735 (1116)
..+..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 5555555555444
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.54 E-value=0.97 Score=51.99 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001241 299 LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 343 (1116)
Q Consensus 299 l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~ 343 (1116)
|...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555444433333333333
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=4 Score=52.10 Aligned_cols=300 Identities=23% Similarity=0.296 Sum_probs=177.3
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH---HH
Q 001241 205 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK 281 (1116)
Q Consensus 205 rRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie---~~ 281 (1116)
|++.++.--|-+-+...|..-=+.+.++=+.|.+..+.|..-|.+=++| +.-+++.-.++|-++..+++ ..
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666677777888888887888888888888888888887765555 33445566666666665543 33
Q ss_pred HHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 001241 282 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA 358 (1116)
Q Consensus 282 ~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE---KL~aRE~~EIQKLldeh~a~L~~KK~EFElElE 358 (1116)
+.+.-++-+++. ..+..++.+.......+..-|..|..|-+ .+.+++..-+++ ++.|..+..+|--+++
T Consensus 246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT 317 (1200)
T ss_pred HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence 334444433333 33445555666666665555555555433 445555544443 3344444444444433
Q ss_pred HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001241 359 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA 426 (1116)
Q Consensus 359 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksLka 426 (1116)
-- |++.-..++.=....+.++.+++..+ ..+.+.|..+...+..+..+..||-+| ++.-+++++=|+.
T Consensus 318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ 397 (1200)
T KOG0964|consen 318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS 397 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence 21 11221112111122222222222222 123334444444455555555555443 3444667777776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001241 427 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 506 (1116)
Q Consensus 427 eEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~Llk 506 (1116)
+=..| +.-++.-++..+.++-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus 398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 777888888888888888888888888777777777777777777788888888888888877666666666
Q ss_pred hhHHHHHHHHHHHHH
Q 001241 507 ETDKLQLEKAKFEAE 521 (1116)
Q Consensus 507 Eae~Lk~eKekFE~E 521 (1116)
|.-.|+..-++.+-+
T Consensus 475 EE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666676666555543
No 35
>PRK11637 AmiB activator; Provisional
Probab=96.54 E-value=2.1 Score=49.36 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001241 591 SEWFTKIQQERADFLLGIEMQKRDLE 616 (1116)
Q Consensus 591 s~~~eKiq~Erad~l~d~EmqkreLE 616 (1116)
..++..+.+-+.+++..|.-.+..|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555
No 36
>PRK12704 phosphodiesterase; Provisional
Probab=96.53 E-value=0.1 Score=62.01 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001241 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1116)
Q Consensus 350 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1116)
+.+++.|+...|..++.++..+ +.++..+|..+.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555443 444556666677777777777777777777777777666666666665555
Q ss_pred HhHHH
Q 001241 430 EADLK 434 (1116)
Q Consensus 430 ~le~e 434 (1116)
+++.-
T Consensus 132 ~~~~~ 136 (520)
T PRK12704 132 ELEEL 136 (520)
T ss_pred HHHHH
Confidence 55433
No 37
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=4.6 Score=51.73 Aligned_cols=274 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001241 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1116)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1116)
||+++..+......|...+++|...+..-..- ..+++.|+-+=.+|.-++..+..
T Consensus 679 l~~~~~~~~~~q~el~~le~eL~~le~~~~kf-------------------------~~l~~ql~l~~~~l~l~~~r~~~ 733 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELEALERELKSLEAQSQKF-------------------------RDLKQQLELKLHELALLEKRLEQ 733 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred hhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHH--HHHHHHHHHh-hhhhhhhhHHHHHhhhhhHHHhHHHHHHh
Q 001241 330 KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE--IEKKRRAWEL-RDLDLGQREESLLEREHDLEVQSRALVDK 406 (1116)
Q Consensus 330 RE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeE--le~K~~~~E~-rEvel~h~Eekl~kREqaLe~k~~~lkEK 406 (1116)
-+.--++.=+..+.-.+..=.++......-.+++.+.= |+++..+|.. ||..++..+..+-.-.|.++..+..++..
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~ 813 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR 813 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 001241 407 EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 486 (1116)
Q Consensus 407 Ekdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrL 486 (1116)
+.++..=.-...+-++.+...+..++.-..++..=+.++-.+.+.+-+.-.....-..+|...+.++...-.+-+.++..
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~ 893 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTS 893 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhH
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH------------------------HHHHHHHHH
Q 001241 487 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR------------------------KEAERVAVE 542 (1116)
Q Consensus 487 QseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~------------------------KEa~~I~eE 542 (1116)
+-+.-.|+-..-.....|..|...++.++..-.++-+.|-.|-+=|. .+++.+.+-
T Consensus 894 ~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k 973 (1174)
T KOG0933|consen 894 QEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEK 973 (1174)
T ss_pred HHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHH
Q ss_pred HHHHHH
Q 001241 543 RVVVSK 548 (1116)
Q Consensus 543 re~lek 548 (1116)
.+++++
T Consensus 974 ~~~l~k 979 (1174)
T KOG0933|consen 974 KEKLEK 979 (1174)
T ss_pred HHHHHh
No 38
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.16 E-value=0.22 Score=59.21 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001241 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1116)
Q Consensus 350 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1116)
+.+++.|+..+|..++.+++.+ +.++..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.+....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555444 444555566666666666666666666666666666666666666555555
Q ss_pred Hh
Q 001241 430 EA 431 (1116)
Q Consensus 430 ~l 431 (1116)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.99 E-value=1.5 Score=49.26 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=116.5
Q ss_pred HHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001241 397 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 476 (1116)
Q Consensus 397 e~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lkit 476 (1116)
=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +.
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~ 204 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence 3444555556666666666666665555555555555555555555555555555555555555555544444333 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001241 477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS 556 (1116)
Q Consensus 477 eeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~er 556 (1116)
.-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-.+
T Consensus 205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2334444 346677777777788888889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 001241 557 LRQERDAMRDQH 568 (1116)
Q Consensus 557 LK~EK~~~r~~~ 568 (1116)
||.+-+.++...
T Consensus 281 Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 281 LKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 40
>PRK00106 hypothetical protein; Provisional
Probab=95.96 E-value=0.54 Score=56.43 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001241 351 SEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 430 (1116)
Q Consensus 351 ~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~ 430 (1116)
.+++.|+...|..++.++...+.. +..+|..+.+|+..|+.+.+.|..+++.|..+.+.|..+++.+...+++
T Consensus 75 lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~ 147 (535)
T PRK00106 75 LEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444333 4444555555555555555555555555555555555555555544444
Q ss_pred h
Q 001241 431 A 431 (1116)
Q Consensus 431 l 431 (1116)
+
T Consensus 148 ~ 148 (535)
T PRK00106 148 V 148 (535)
T ss_pred H
Confidence 4
No 41
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=8.3 Score=49.80 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHH
Q 001241 491 KEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQ 567 (1116)
Q Consensus 491 KeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre---~lek~~~~E~erLK~EK~~~r~~ 567 (1116)
+-.|......-....+.+..++.+-++|+++|..++-++++..+|.+.....|- ++..-...|.+|||.+-...-
T Consensus 302 k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~-- 379 (1141)
T KOG0018|consen 302 KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA-- 379 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh--
Confidence 334444444555566778889999999999999999999999999999887554 455555667788887655433
Q ss_pred HHhhhhhhhhhHHHHHHhhhh
Q 001241 568 HKRDVDSLNREREEFMNKMVH 588 (1116)
Q Consensus 568 ~krelEsL~~ekEsF~~kMeh 588 (1116)
..+|+.|++...+=-+...|
T Consensus 380 -~~el~~ln~~~r~~~~~ld~ 399 (1141)
T KOG0018|consen 380 -LEELEVLNRNMRSDQDTLDH 399 (1141)
T ss_pred -HHHHHHHHHHHHHHHHHHhh
Confidence 66677766665554444443
No 42
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.75 E-value=0.0026 Score=78.69 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhh-------ccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhh
Q 001241 45 DKAALIAYIAKLETEIFEHQH-------HMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLK 117 (1116)
Q Consensus 45 D~~aLia~IskLE~ElydYQy-------NMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLk 117 (1116)
.+..|.+...+|++|+-+... ..+-|--.+.-|.+..++++..+++- .+.+.+-...+..++.-=+.|+
T Consensus 202 ~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L~ 277 (859)
T PF01576_consen 202 QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQLR 277 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHHH
Confidence 344555666677777665544 44445445556666666666555442 1222222334555555566888
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHH
Q 001241 118 KTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEV 197 (1116)
Q Consensus 118 KALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eV 197 (1116)
..|.-|-.+...|++.|.-+..+.+.+|--++.-... .+..+++=---...+|..+...+-+++.+.+.+++.-+-+
T Consensus 278 eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL 354 (859)
T PF01576_consen 278 EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRL 354 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999888888666543322 2323332222234455555555555666655555554444
Q ss_pred hhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001241 198 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1116)
Q Consensus 198 EaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1116)
.+=-.+++-+.-...+.+...++...+--..|.+|..++......+-..++-....+-.++..-..+....-.++
T Consensus 355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444444444444445544333336678888887777666666666555555555555555544444444
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.73 E-value=5.8 Score=46.41 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=52.5
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001241 455 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK 534 (1116)
Q Consensus 455 ~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~K 534 (1116)
.++.++.+...+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-.++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 45555555555555555555555556665555566666666666666666666666666666666654444444444444
Q ss_pred HHHHHHHHHH
Q 001241 535 EAERVAVERV 544 (1116)
Q Consensus 535 Ea~~I~eEre 544 (1116)
++..+..++.
T Consensus 387 ~l~~~~~~~~ 396 (562)
T PHA02562 387 ELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.50 E-value=15 Score=49.48 Aligned_cols=146 Identities=18% Similarity=0.250 Sum_probs=76.0
Q ss_pred HHhHHHHHHHHHhhhhhhhhhh-hhh-----h---------------hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001241 127 IASLEKAVHEIRAESAETKVAA-DSK-----F---------------AEARCMVENAQKKFAEAEAKLHAAESLQAEANR 185 (1116)
Q Consensus 127 VadLEKAL~emr~E~AeiK~ts-esK-----L---------------aEA~aLv~~~eeKslEvE~KL~aAeak~AEa~R 185 (1116)
|.+|+.+|++.|--.-.||++. +.. + .+-+.|++.| +-.-.|+..|..++..+..
T Consensus 232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~ 307 (1486)
T PRK04863 232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY 307 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4567777777666666666543 111 1 1222333333 2233566666666666666
Q ss_pred chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHh
Q 001241 186 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 265 (1116)
Q Consensus 186 k~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~ 265 (1116)
+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+.+-.+.+.+....+.
T Consensus 308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle 386 (1486)
T PRK04863 308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE 386 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777776665543322222 222223344444455555555555555555555555555555555
Q ss_pred HhHHHHHHHhhc
Q 001241 266 RKEKELEASRAN 277 (1116)
Q Consensus 266 ~kEkeLEe~kkk 277 (1116)
..+.++..++..
T Consensus 387 elEeeLeeLqeq 398 (1486)
T PRK04863 387 AAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 45
>PRK12704 phosphodiesterase; Provisional
Probab=95.39 E-value=0.21 Score=59.45 Aligned_cols=63 Identities=32% Similarity=0.339 Sum_probs=31.2
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhh
Q 001241 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 424 (1116)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL 424 (1116)
..+..++.++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|
T Consensus 57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~L 119 (520)
T PRK12704 57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKEL 119 (520)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456666555554 445555666666666555554444444444444444444333333
No 46
>PRK00106 hypothetical protein; Provisional
Probab=95.21 E-value=0.84 Score=54.89 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=9.5
Q ss_pred ccchhhhhhccC
Q 001241 896 EDGIHAARKRRV 907 (1116)
Q Consensus 896 ~~~~~agrkrr~ 907 (1116)
--++||||-=||
T Consensus 476 ~yaiqaGREiRv 487 (535)
T PRK00106 476 SFALQAGREIRI 487 (535)
T ss_pred HHHHhcCCeEEE
Confidence 356899998886
No 47
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.18 E-value=0.26 Score=58.54 Aligned_cols=70 Identities=29% Similarity=0.291 Sum_probs=36.9
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001241 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1116)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 431 (1116)
..+..+++++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-+.|..+++.|..-++++
T Consensus 51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666665554 4455566666666666655555555555555554444444444444444433
No 48
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.17 E-value=11 Score=46.00 Aligned_cols=311 Identities=17% Similarity=0.184 Sum_probs=171.3
Q ss_pred HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHH
Q 001241 130 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS 205 (1116)
Q Consensus 130 LEKAL~emr----~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~Lr 205 (1116)
|+.-+..+| .+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~--------------- 132 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA--------------- 132 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 344444444 4778999999999999999999998888888777766655555543332222
Q ss_pred HHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001241 206 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1116)
Q Consensus 206 RerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~L 285 (1116)
++...--|+++.+|...|-+.+.-++-.++-+..=|+.....-+...++..+|..+++-++.+...-
T Consensus 133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1222234677888888888888888888887777777777777788888888888888887775443
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhh
Q 001241 286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKL 363 (1116)
Q Consensus 286 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~-~EIQKLl-deh~a~L~~KK~EFElElE~krKs 363 (1116)
.+-...+..-+..|.-. ...=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.
T Consensus 200 ~d~~n~~q~Lleel~f~----------~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFL----------KRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHhHHHHHHHHHHHH----------HhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33322222222222111 11222333332222 12221 1111110 011122222344566666677777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001241 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1116)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKE 443 (1116)
++.=.+.|+.++...=.--+ ..-+..-+.+...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+.
T Consensus 269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence 77777777776653110000 00111112222222222222223333344555556666666777777766
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001241 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 499 (1116)
Q Consensus 444 el~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~ 499 (1116)
..+..=++.+...+.+-++..++.- |...|+-.+.-|--||..||.
T Consensus 339 ~~e~~L~~kd~~i~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 339 SFEQALNDKDAEIAKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence 6655555444444444444444443 444455555788889999985
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.94 E-value=10 Score=44.45 Aligned_cols=99 Identities=26% Similarity=0.269 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001241 434 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 513 (1116)
Q Consensus 434 ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~ 513 (1116)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++...+.|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 4444444444444444444444443333333333333333333322 233666777777777778777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001241 514 EKAKFEAEWEMIDEKREELRKEAERV 539 (1116)
Q Consensus 514 eKekFE~EWE~LDEKRael~KEa~~I 539 (1116)
+....+.+|..+...++++.++....
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999998763
No 50
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.35 E-value=0.86 Score=47.95 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001241 356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 425 (1116)
Q Consensus 356 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk 425 (1116)
++...|..++.|+..++.++..+|..|..+|+.|..+...|+++...|..++++|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666665555555555555555555544444
No 51
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.33 E-value=16 Score=43.95 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=78.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001241 423 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 502 (1116)
Q Consensus 423 sLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke 502 (1116)
.|.+..++|+.-+..|.+-++++..+...++.++.+++..+..+..-+++.......- .-|..++..+|.+-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3667777787778888888888888888888888888877777777777665555433 334444444444443
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001241 503 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF 582 (1116)
Q Consensus 503 ~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF 582 (1116)
....+..+.+. .|..|-..-.++..|++....+.. ....|-..+|.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea~----~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEAE----EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211 222222222333333332221111 1224555555555555555554444444444444
Q ss_pred HHhhh
Q 001241 583 MNKMV 587 (1116)
Q Consensus 583 ~~kMe 587 (1116)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44333
No 52
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=28 Score=45.77 Aligned_cols=338 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHH
Q 001241 236 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQK 315 (1116)
Q Consensus 236 Lqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~ 315 (1116)
+++...|+.-.--...+-+.+..=-++..+.+|...+++-.-+..++..+.-+.-.+.-.+.. .=..+......++.
T Consensus 269 I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~---~~~ki~~~~~~~~~ 345 (1293)
T KOG0996|consen 269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYE---SRAKIAEMQEELEK 345 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred hHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhh
Q 001241 316 KEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHD 395 (1116)
Q Consensus 316 KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqa 395 (1116)
-+.+|...-+|+..-...+.++.-+- .....+-..++.+++.+.-.++..=-+.-.+++-.++|.=.++.|-+..
T Consensus 346 ~~e~lk~~~ek~~~e~~~~~~k~e~~-----~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke 420 (1293)
T KOG0996|consen 346 IEEGLKDENEKFDIESNEEVEKNEAV-----KKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE 420 (1293)
T ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHh
Q 001241 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI----IKSDLQKSLSSLDEKKKQVNCAKD 471 (1116)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~----lK~dlEK~ra~~e~q~~qi~ee~E 471 (1116)
+++-.++..+.++-.+.=....-+-...+...++.++.+...|...+.++.. +..++.++..++..-..++.+++.
T Consensus 421 ~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 421 IEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001241 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK 551 (1116)
Q Consensus 472 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~ 551 (1116)
.+.+.++|=.-|+-.+..+..-.+.+-.+..-+++..++.+..--....+...+--+..++.|++.....+=..+...++
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~ 580 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN 580 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHhh--hhhhhhhHHH
Q 001241 552 DERDSLRQERDAMRDQHKRD--VDSLNREREE 581 (1116)
Q Consensus 552 ~E~erLK~EK~~~r~~~kre--lEsL~~ekEs 581 (1116)
.=+.++-.-+..|...-.+. +.+|.+.+++
T Consensus 581 ~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 581 KLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=24 Score=44.82 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001241 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 518 (1116)
Q Consensus 439 ~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF 518 (1116)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++ |.++.++-+. .
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQRe----i 383 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQRE----I 383 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----H
Confidence 356788888899999999999999999999999999999998888888776665544 3333322111 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001241 519 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 576 (1116)
Q Consensus 519 E~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~ 576 (1116)
| -.+-++-.|+.++-.--|+.+++...-|-+|.|. ..|.+|..|+-|-+-
T Consensus 384 E------~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~iv 433 (1118)
T KOG1029|consen 384 E------RQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEWIV 433 (1118)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence 1 1122223334444444556666666666665543 345555555554443
No 54
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.00 E-value=15 Score=39.31 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001241 480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559 (1116)
Q Consensus 480 R~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~ 559 (1116)
|..-+.|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44566777889999999999999999999999999999999999999999999998887665554443322
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001241 560 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 635 (1116)
Q Consensus 560 EK~~~r~~~krelEsL~~ekEsF~---~kMehErs~~~eKiq~Erad~l~d~EmqkreL-E~~iqkRqEEiE~~L~EREk 635 (1116)
..+. ....++..|..+.+... .+++.||.+|..+-.. +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23555666666666554 3444555555554442 233332 22222 33455566666666666665
Q ss_pred HHHH
Q 001241 636 AFEE 639 (1116)
Q Consensus 636 ~FEe 639 (1116)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=92.31 E-value=25 Score=40.21 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=35.6
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 001241 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 446 (1116)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~ 446 (1116)
..|..++..+.++--++-.|.+.+.++=+++++....|..+-.+|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777777777777777777777666666666655554
No 56
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=92.27 E-value=3.7 Score=43.32 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=38.1
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001241 374 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (1116)
Q Consensus 374 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le 432 (1116)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...+...+++++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777776666666666666666555555555553
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.64 E-value=24 Score=38.68 Aligned_cols=241 Identities=25% Similarity=0.330 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001241 441 EKEEVNIIKSDL----QKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 516 (1116)
Q Consensus 441 eKEel~~lK~dl----EK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe 516 (1116)
+|+++..|++-+ +|.+ +++.+-..+......+.... ......+..-.-.+|..+|.+-..+..|...|..+..
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEID 78 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence 556666555543 3443 34444444444444444442 3444556677778888888888888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001241 517 KFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD---AMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593 (1116)
Q Consensus 517 kFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~---~~r~~~krelEsL~~ekEsF~~kMehErs~~ 593 (1116)
+...+.+.+-.|-.+.......+. ++-..|+...+ ..+......+.+|.-+-.-.....+.|-..+
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le-----------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLE-----------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 887777776555444433332222 23333333322 2344455556666655543333444455666
Q ss_pred HHHHHHHHHHhhhhhH-hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001241 594 FTKIQQERADFLLGIE-MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672 (1116)
Q Consensus 594 ~eKiq~Erad~l~d~E-mqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE 672 (1116)
-.+++ ..+.-++. ....+|...|..-+.+.+.....--...+.--...+..|+.........+..++.|...+...
T Consensus 148 ~~~~~---~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 148 REQIQ---SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp STT-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccc---cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence 66555 33333333 456677777777777777666555555555556666666666666666666666666665555
Q ss_pred HHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001241 673 RMEINMDRQRRDREWAELNNSIEELM 698 (1116)
Q Consensus 673 R~Ei~~~ke~le~e~aEm~kdIeeL~ 698 (1116)
-+.+..+-..+...-+.+.+.|.+|.
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHH
Confidence 54444444444444444444444443
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.61 E-value=41 Score=41.25 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=17.9
Q ss_pred HHHHHHHhhHhhhhh----hhhHHHHHHhHHHHHHHHH
Q 001241 105 AIAEARKREESLKKT----LGVEKECIASLEKAVHEIR 138 (1116)
Q Consensus 105 ALsEaeKREEnLkKA----LgvEKqCVadLEKAL~emr 138 (1116)
.|++.....+.|+.| ||++- +..|.+-|..+.
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~--~~~L~~dl~~~~ 195 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDL--IDRLAGDLTNVL 195 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHH--HHHHHHHHHHHH
Confidence 355544455556665 77777 555555555543
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.23 E-value=46 Score=41.16 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=119.7
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001241 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (1116)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~ 333 (1116)
+....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34455666667777777777766666666555555555555555444444444444444444444322222110000 2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001241 334 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1116)
Q Consensus 334 EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1116)
.+|.+++. -..|..++..+.+..|.-+.++++.=+... ..++-+.-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~--------------~~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKA--------------SNRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence 22333322 233445555555556655555544332222 222222333344444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001241 414 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484 (1116)
Q Consensus 414 sk~LKEkEksLkaeEK~le~e---------k~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~l 484 (1116)
...++.|+...+...+.++.- ...++.=...|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444554444444433322 23455556678888999999999999999999999999999998888887
Q ss_pred HHHHH
Q 001241 485 VLEIK 489 (1116)
Q Consensus 485 rLQse 489 (1116)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 76666
No 60
>PRK12705 hypothetical protein; Provisional
Probab=90.98 E-value=13 Score=45.09 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=33.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001241 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423 (1116)
Q Consensus 357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 423 (1116)
+...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666655555 44566666666666666666666555555544444443
No 61
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.19 E-value=2 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 001241 619 IEKRREELESSFREREKAFEEE 640 (1116)
Q Consensus 619 iqkRqEEiE~~L~EREk~FEee 640 (1116)
..+|..-+--.+..+-..|.+-
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777778655
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.15 E-value=88 Score=41.19 Aligned_cols=134 Identities=20% Similarity=0.279 Sum_probs=88.6
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHH
Q 001241 127 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 206 (1116)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrR 206 (1116)
|.+.++.|.....++-. .+-|++.+..=+.....|.-++..|+-.-+|+.+++......-+..+.+.-+.-++++|
T Consensus 276 V~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33344455444444433 23345556666666666666666677777777777788888888888888888888999
Q ss_pred HHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHH-HHHhhhhhhhhHhhHhhHHHH
Q 001241 207 RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSKLQEL 264 (1116)
Q Consensus 207 erlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL-~e~q~~LNqREe~~~e~~~~l 264 (1116)
+-.-+..+..-.+..+.+-+......+|.+-..+.++ -.++..+-++++.++-..+.+
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEV 410 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 8888888877777777777777777777777776666 444444555555444433333
No 63
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.62 E-value=4.7 Score=49.65 Aligned_cols=69 Identities=30% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH
Q 001241 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 325 (1116)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE 325 (1116)
|+..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.-
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444332 3356788888888888888877777777777777777777777654
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.13 E-value=54 Score=37.49 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=112.9
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001241 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475 (1116)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lki 475 (1116)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+..++....+.+..+..++.+....+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 34455566666666777777666666665555555555555555555555555555555555555555444444333322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001241 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1116)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 555 (1116)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24566555555444 34445556667888999999999999999999999999999888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 001241 556 SLRQERDAMRDQH 568 (1116)
Q Consensus 556 rLK~EK~~~r~~~ 568 (1116)
+||..-..++...
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.97 E-value=1.1e+02 Score=40.87 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=105.1
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhcHHHHHHHHhhhhhhhhHhHH
Q 001241 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV 297 (1116)
Q Consensus 222 ~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~k----EkeLEe~kkkie~~~~~Lk~ke~dl~~rl~ 297 (1116)
|..--.+|..-+-+|....--+.-+.. |-++-+++++....++.. ..-|+++.......-.+++.-..+|...-.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333345555555555554444433332 334445555544444332 334666666666666666666666665555
Q ss_pred HhhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 001241 298 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368 (1116)
Q Consensus 298 ~l~~rEee~~~~~-------~~Le~KEkELl~leEKL--~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEl 368 (1116)
.|+.-.+++...+ ..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5555444444333 44444444444444443 356677888888765554444555666 6776666666666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhh----hhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001241 369 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1116)
Q Consensus 369 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 431 (1116)
+.|..... .-..+=++|..| =.+-+.++..|++.|-.+..+..+|.-+...|--.++++
T Consensus 1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 55543221 111112222222 123345566666666666666555555555555555544
No 66
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.61 E-value=1.3e+02 Score=40.28 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=26.6
Q ss_pred CCCCCccccccccCCCCCCCcccceeeeeeeeeeeceee
Q 001241 964 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTC 1002 (1116)
Q Consensus 964 ~~~~~~~~~~~s~nqtqg~~ee~~~~~~d~ii~isevtc 1002 (1116)
-.|+++-+...+..+-.++ .-.=+|-|++.|||-.||-
T Consensus 1127 V~~s~~~~l~~~~~~~k~~-~~~~il~i~k~~~v~~vt~ 1164 (1317)
T KOG0612|consen 1127 VIVSSKKILFYVSEQDKEQ-SGPLILDIKKLFHVRQVTQ 1164 (1317)
T ss_pred EeecccceEeeeccccccc-cchhhhhhhhceeEEeecc
Confidence 3466777777777777763 2234667889999999874
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.52 E-value=56 Score=37.01 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001241 493 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 525 (1116)
Q Consensus 493 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 525 (1116)
+|+..+.+...+....+.+..++..+..+=..+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444333333
No 68
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.73 E-value=1.6e+02 Score=40.40 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHhh
Q 001241 333 NEIQKIIANHESALRVKQSEFEAELAIKYK 362 (1116)
Q Consensus 333 ~EIQKLldeh~a~L~~KK~EFElElE~krK 362 (1116)
..-++.++.+-..|..+..++|--+++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888887766554
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.28 E-value=1.2e+02 Score=38.49 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHH-HHhhhhHHHHhhhhH
Q 001241 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 418 (1116)
Q Consensus 357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdl~~Ksk~LK 418 (1116)
+-++|+.+|.|++.-++++-.+|-.+..+|..+ ..++.. +|-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555666666666666666666666666655 222333 455556665555553
No 70
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.73 E-value=1.1e+02 Score=37.71 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Q 001241 658 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 704 (1116)
Q Consensus 658 E~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KL 704 (1116)
.+.++.-++..++++..++..+...+.++...++++|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666666666666666655544443
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.80 E-value=55 Score=33.50 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=67.0
Q ss_pred HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001241 182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 261 (1116)
Q Consensus 182 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~ 261 (1116)
.|.-+..+++-++++++.|-..+-.++.||..=..-.|.++..-...|.+-..+|.++..+..... ...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667778888888888888888888888888888888888888888888888887776554 334
Q ss_pred HHHhHhHHHHHHHhhcHHHHH
Q 001241 262 QELSRKEKELEASRANVEEKF 282 (1116)
Q Consensus 262 ~~l~~kEkeLEe~kkkie~~~ 282 (1116)
+-+..+|.+|+.+.+++..+.
T Consensus 80 rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456666777776666655443
No 72
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.19 E-value=1.9e+02 Score=39.17 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=74.9
Q ss_pred hhhhccchhheehhhhhhhHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHh
Q 001241 62 EHQHHMGLLILEKKELASKYEQIKASA--EAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRA 139 (1116)
Q Consensus 62 dYQyNMGLLLiEkKEwtSK~EeLkqa~--~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~ 139 (1116)
|=-|.+|.|- .-|+ |+. +.+ ..|..... .--|++.+.|=.-|.-.+..=..=++.|+..+..+..
T Consensus 711 dG~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 711 DGRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred CCceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788775 7788 654 222 22222222 2335566666666777777766777788888888888
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001241 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 194 (1116)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL 194 (1116)
+.+. |.++.-|..|+..+..+......+..++..|+..++.+-+....+.+.+
T Consensus 778 e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 778 ELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777 7777888888888877766666666666666655555555444444443
No 73
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.97 E-value=96 Score=38.54 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=38.1
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH--------hhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001241 147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA--------ERKLQEVVAREDDLSRRIASFKADCEEK 218 (1116)
Q Consensus 147 tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~a--------eRKL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1116)
..+.|...+..-..-+.+...++..+|.+|++.++.--+++... +.+|.++..+=...+-++....+-....
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666667777777777777666655544332 2344444444444444444444333333
No 74
>PRK09039 hypothetical protein; Validated
Probab=82.95 E-value=94 Score=35.82 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=73.4
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001241 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1116)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1116)
|=-.|+.+...-++|+-.|.+++..+.. +...-+.+....++...-..+++..+....+.+++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778999999999999999999998882 333333333333322222335666666666666666666777777777
Q ss_pred HHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHH
Q 001241 196 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 233 (1116)
Q Consensus 196 eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ewe 233 (1116)
-+.+.=.+||+++-+..++..+.+.....++..+.+.+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666665544433333333
No 75
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=81.79 E-value=36 Score=32.78 Aligned_cols=89 Identities=26% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001241 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1116)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKE 443 (1116)
++..|..|+.+...++..+..++..|.++++.|....-.+..-=++-+ ....-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~----------~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENE----------AKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888888888888888877766654433333 3333334444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 001241 444 EVNIIKSDLQKSLSSLDEK 462 (1116)
Q Consensus 444 el~~lK~dlEK~ra~~e~q 462 (1116)
+|..+..+|..+.+.+..-
T Consensus 82 ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655554433
No 76
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=81.58 E-value=70 Score=38.90 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=41.9
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001241 405 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1116)
Q Consensus 405 EKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk 474 (1116)
+++++++.+-.-...||..-....+..+..+.++....+++...+...++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666666666666666666665555555554433
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.41 E-value=1.6e+02 Score=36.54 Aligned_cols=276 Identities=21% Similarity=0.283 Sum_probs=126.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001241 353 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (1116)
Q Consensus 353 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le 432 (1116)
||+|+-.-|+.+++- ..+....|-.+.+-..+++.-..++.+++++..+==..++.+...|...+-++.
T Consensus 90 ye~El~~ar~~l~e~-----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 90 YEAELATARKLLDET-----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred hhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 555555555555443 233333333444444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001241 433 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (1116)
Q Consensus 433 ~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk 512 (1116)
.-+...-.=-+++.-+|.+...+...|..=+.+++.|. --|.++.---..|.++|+-+..+=.. +++
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~~~h~~------eI~ 225 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLKRIHKQ------EIE 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhccHH------HHH
Confidence 33333333344555556666666666655555555543 11233333334466666655433221 223
Q ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh-----------hhH
Q 001241 513 LEKAKFEAEW--EMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN-----------RER 579 (1116)
Q Consensus 513 ~eKekFE~EW--E~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~-----------~ek 579 (1116)
+++.+|..+- +.=|+=+.+|..=+.+|-.+=++. .+.=+.+++.-|++.+..++ ..|
T Consensus 226 e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~----------~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~r 295 (546)
T KOG0977|consen 226 EERRKARRDTTADNREYFKNELALAIREIRAQYEAI----------SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAR 295 (546)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 3344444443 222333333443333333332222 22223334444444444433 233
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001241 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL 659 (1116)
Q Consensus 580 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~ 659 (1116)
|+... |. ..|-.=|++ +.|+|-.-. .+.++.+.++..|.+=-+.|+..=..- ..+|
T Consensus 296 EEl~~-~R-------~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i 351 (546)
T KOG0977|consen 296 EELRR-IR-------SRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEI 351 (546)
T ss_pred HHHHH-HH-------hcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHH
Confidence 33221 11 111111111 124444333 455677788888888888888643221 2345
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhHH
Q 001241 660 EQVTLEIKRLDLERMEINMDRQRRDRE 686 (1116)
Q Consensus 660 Eev~lE~~rLekER~Ei~~~ke~le~e 686 (1116)
..|.-|+..|-.|.+.+--.+.-|+.+
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDAE 378 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHhH
Confidence 556666666666666666566555543
No 78
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.92 E-value=0.63 Score=56.93 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHH-------h----chHHHHHHHHHHHHHHHHHhhhhhhhhHhhHh
Q 001241 191 ERKLQEVVAREDDLSRRIASFKADCEEKEREIIRER-------Q----SLSDRKKILQQEHERLLDAQTLLNEREDHILS 259 (1116)
Q Consensus 191 eRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qR-------e----~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e 259 (1116)
..+.++++..-..|+.++-++..+.......+..-- . .+.++..++...++.+......+..=+.++..
T Consensus 192 ~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~ 271 (713)
T PF05622_consen 192 AQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEE 271 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777777777776655544333211 1 12333444444444333222212222222333
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001241 260 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1116)
Q Consensus 260 ~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1116)
....+..+..+.+++...-+ +..+|+++-|-+..+...+...|.++...+..|+ ++-.+. ..+ +.|
T Consensus 272 le~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLe----d~~~lk--------~qv-k~L 337 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVEKYKKKLE----DLEDLK--------RQV-KEL 337 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--------HHH-HHH
Confidence 33344444444444443332 4566777777777666666666666655554333 222222 122 456
Q ss_pred HHhHHHHhhhhhhHHHHHHH
Q 001241 340 ANHESALRVKQSEFEAELAI 359 (1116)
Q Consensus 340 deh~a~L~~KK~EFElElE~ 359 (1116)
.++++.|--.+..+|-++..
T Consensus 338 ee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 338 EEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777743
No 79
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.84 E-value=2e+02 Score=36.73 Aligned_cols=487 Identities=17% Similarity=0.239 Sum_probs=215.3
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH----
Q 001241 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE---- 268 (1116)
Q Consensus 193 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kE---- 268 (1116)
||++.-..-..|..+ +..|+-.+|++++.=---+.+-+-++++..--|.+.|..+||=++..+.-...|+...
T Consensus 216 KlKE~~~k~~~leee---y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe 292 (786)
T PF05483_consen 216 KLKEDYEKFEDLEEE---YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQE 292 (786)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 444433333333332 3456666666655544444555555555555555555555555555555555555444
Q ss_pred ---HHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhh----hHHHHHHHHHHHHHhHHhHHHHHHHHhhhh---hHHHHHH
Q 001241 269 ---KELEASRANVEEKFKALNEEKSNLDLTLVSLLK----REEAVIEREASLQKKEQKLLVSQETLASKE---SNEIQKI 338 (1116)
Q Consensus 269 ---keLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~----rEee~~~~~~~Le~KEkELl~leEKL~aRE---~~EIQKL 338 (1116)
.+|+.++..+..+-.+-+.-+.++......+.. +|-.+.............+..|+-+++.=. +.|+|.+
T Consensus 293 ~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~ 372 (786)
T PF05483_consen 293 HLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRL 372 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544444444333333333333333222221 111222222233333334445555544322 2444443
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhh------hhHHHhHHHHHHhhhhHHH
Q 001241 339 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE------HDLEVQSRALVDKEKDLVE 412 (1116)
Q Consensus 339 ldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE------qaLe~k~~~lkEKEkdl~~ 412 (1116)
-. ++....-+=+||..+-..+++..+.+.. +|+++...-.-|++.. ..+++-.+.|+..+.+|..
T Consensus 373 ~~-----~ed~lk~l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~ 443 (786)
T PF05483_consen 373 KK-----NEDQLKILTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTG 443 (786)
T ss_pred HH-----hHHHHHHHHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222233345555555555555544332 2333322222222222 3355555555666666554
Q ss_pred HhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-------hhhhhhhHHH
Q 001241 413 RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-------MKSEAGELSV 485 (1116)
Q Consensus 413 Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lki-------teeER~E~lr 485 (1116)
. |.-+++.+.-.+-.| -...+.=+.+-..++.++..++++..+=.+-..+... +.-+++...-
T Consensus 444 l---lq~~ekev~dLe~~l-------~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~ 513 (786)
T PF05483_consen 444 L---LQIREKEVHDLEIQL-------TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMAL 513 (786)
T ss_pred H---HHhhhhHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 333344444444333 3333333333333334444444333222222111111 1112222222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhH
Q 001241 486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD-------SLR 558 (1116)
Q Consensus 486 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e-------rLK 558 (1116)
==.++.+-|...+.|.+-++++++.|......+-.|.+.+-+.-+.-.-|.++--...+.--+.+-.|-. .|.
T Consensus 514 elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~le 593 (786)
T PF05483_consen 514 ELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILE 593 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHH
Confidence 2235677888899999999999999988888887777776655544444444432222222121111111 122
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhh-hhH--hhhhhhHHHHHHHHHHHHhHHHHH--
Q 001241 559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL-GIE--MQKRDLENCIEKRREELESSFRER-- 633 (1116)
Q Consensus 559 ~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~-d~E--mqkreLE~~iqkRqEEiE~~L~ER-- 633 (1116)
+.-.+++.++. .+.-+...+.+|--.|-.++--|=.+.-- ++- -..-++++--+..-|+..+|+.+=
T Consensus 594 nk~~~LrKqvE--------nk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~ 665 (786)
T PF05483_consen 594 NKCNNLRKQVE--------NKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIES 665 (786)
T ss_pred HHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333332 22333344666666666665555443311 121 222233333333344444444422
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHH-----------H-------HHHHHHHHHHhHHHH-----------HHhhhhhhhhh
Q 001241 634 EKAFEEEKMREFQQISSLKEKAEK-----------E-------LEQVTLEIKRLDLER-----------MEINMDRQRRD 684 (1116)
Q Consensus 634 Ek~FEeek~~EL~~IN~lkE~a~k-----------E-------~Eev~lE~~rLekER-----------~Ei~~~ke~le 684 (1116)
.+.|+.+=..|....-..-+-|-+ . ||.-+..-.++=-|| +|....+.-|+
T Consensus 666 K~~~e~~L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE 745 (786)
T PF05483_consen 666 KSISEEELLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLE 745 (786)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555444444433322221111 1 122222222333333 45555666677
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Q 001241 685 REWAELNNSIEELMVQRQKLEEQRQ 709 (1116)
Q Consensus 685 ~e~aEm~kdIeeL~~ls~KLk~QRE 709 (1116)
-+.+-++.+|+.|..|=..-..-.+
T Consensus 746 ~ELs~lk~el~slK~QLk~e~~eKE 770 (786)
T PF05483_consen 746 LELSNLKNELSSLKKQLKTERTEKE 770 (786)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7777777777776655444333333
No 80
>PRK09039 hypothetical protein; Validated
Probab=78.57 E-value=1.3e+02 Score=34.62 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.0
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001241 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 515 (1116)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eK 515 (1116)
++..-...|..++..-.+-..-=..|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666667778888888888666666666655544
No 81
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.38 E-value=1.4e+02 Score=34.70 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=11.9
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHH
Q 001241 570 RDVDSLNREREEFMNKMVHEHSEWFTKIQ 598 (1116)
Q Consensus 570 relEsL~~ekEsF~~kMehErs~~~eKiq 598 (1116)
+.+..|..+|-...+.|++|+.-+..+++
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~ 141 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQ 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444444444444333333
No 82
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=78.18 E-value=1.5e+02 Score=34.89 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001241 152 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANR 185 (1116)
Q Consensus 152 LaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~R 185 (1116)
-..+.....-++....+++.+|..|+..+..--+
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555554433
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.49 E-value=1.3e+02 Score=33.81 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=33.6
Q ss_pred CCCCCCccc---ccCCCccccCCCCcHHHHHHHHHccCChHHHhhhcHHHHHHHHHHHHHHHhhhhh
Q 001241 2 ASPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQH 65 (1116)
Q Consensus 2 ~~p~~~~l~---~~~g~rvl~~~~~d~~iWkr~~eaG~De~S~~rrD~~aLia~IskLE~ElydYQy 65 (1116)
.+|..|.++ |..|+.|-.+++= +.+|-..+ ..+...|.+.+.+|..++..++-
T Consensus 47 ~~~~~G~v~~i~V~eG~~V~kG~~L----------~~ld~~~~-~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 47 QHLEGGIVREILVREGDRVKAGQVL----------VELDATDV-EADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred ccCCCcEEEEEEeCCCCEecCCCeE----------EEEccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678776 8899988654421 12344444 34667788888888877766543
No 84
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.96 E-value=1.5e+02 Score=34.40 Aligned_cols=165 Identities=21% Similarity=0.304 Sum_probs=105.9
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001241 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE----RVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (1116)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eE----re~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 579 (1116)
|..+-.-||.+-..+-..|-.|-+.-..|+..+-.|.-. =|-++..+..=-+.|+++|..+--.|.++=|.|.-.=
T Consensus 32 L~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L 111 (310)
T PF09755_consen 32 LQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDL 111 (310)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443322 2333333444467899999999888888877776554
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001241 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL 659 (1116)
Q Consensus 580 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~ 659 (1116)
-.=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.+|+-. .|.--+.|=+ +|-..+-+-|
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVd-lEn~LE~EQE---~lvN~L~Kqm 187 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVD-LENTLEQEQE---ALVNRLWKQM 187 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-HHHHHHHHHH---HHHHHHHHHH
Confidence 44577888999999999999999998888888888888888888888865555422 2222222222 3444567778
Q ss_pred HHHHHHHHHhHHH
Q 001241 660 EQVTLEIKRLDLE 672 (1116)
Q Consensus 660 Eev~lE~~rLekE 672 (1116)
.++..|...|+..
T Consensus 188 ~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 188 DKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777765
No 85
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.94 E-value=80 Score=34.59 Aligned_cols=130 Identities=22% Similarity=0.325 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001241 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (1116)
Q Consensus 444 el~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 523 (1116)
+|-.|+..+--.++.+.....++..-...+..- . -|++.|-.+-.-...|++-|+..-..++.|.-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555444443221 1 23444444444455555555555555555554
Q ss_pred hhHHHHHHH---HHHH------HHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 001241 524 MIDEKREEL---RKEA------ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 594 (1116)
Q Consensus 524 ~LDEKRael---~KEa------~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~ 594 (1116)
.|..--+.+ .... .....++.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 0000 000000100 011223344333333 34555667788999999999999997
Q ss_pred H
Q 001241 595 T 595 (1116)
Q Consensus 595 e 595 (1116)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.91 E-value=1.3e+02 Score=33.65 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=55.2
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001241 505 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 584 (1116)
Q Consensus 505 lkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~ 584 (1116)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444445555555556666666666666666666666666666666666555543 45667788888888
Q ss_pred hhhhhhhhHHHHHH
Q 001241 585 KMVHEHSEWFTKIQ 598 (1116)
Q Consensus 585 kMehErs~~~eKiq 598 (1116)
+|.-+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 88876666666554
No 87
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=76.11 E-value=2.5e+02 Score=36.53 Aligned_cols=370 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHH---HHHHHHHHHHHhhhh
Q 001241 304 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE---DEIEKKRRAWELRDL 380 (1116)
Q Consensus 304 ee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~e---eEle~K~~~~E~rEv 380 (1116)
+.+...+--|.-.+..|.+||-++..+|.. -.-|++-.+.+..-+.+-|.|||+-+--++ ++|-.|+.++--.=.
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~e--kq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEME--KQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001241 381 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1116)
Q Consensus 381 el~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e 460 (1116)
+|+..=..|..-+-.+..++....+..+.+..|++.++|- ...+.++-..-...+-.+-.+-
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~------------------~~~nD~~sle~~~~q~~tq~vl 231 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKED------------------LIEKDQKSLELHKDQENTQKVL 231 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhcchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001241 461 EKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1116)
Q Consensus 461 ~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 540 (1116)
.+..|+.--.+-|...+-.- +.|++..+-+-+--.+|..-.-+|+.-+.....|--.-.+--.+++.++....
T Consensus 232 ~ev~QLss~~q~ltp~rk~~-------s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 232 KEVMQLSSQKQTLTPLRKTC-------SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHHhHhhhhhHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH-------HHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhh
Q 001241 541 VER-------VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKR 613 (1116)
Q Consensus 541 eEr-------e~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~Emqkr 613 (1116)
.-| +--.+|++.|--.|+.++.++|-..... ++.=|+|-++.. |+|-++-
T Consensus 305 qt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa----rrk~egfddk~~-------------------eLEKkrd 361 (1265)
T KOG0976|consen 305 QTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA----RRKAEGFDDKLN-------------------ELEKKRD 361 (1265)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcchhHHHH-------------------HHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhh
Q 001241 614 DLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 693 (1116)
Q Consensus 614 eLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kd 693 (1116)
.++++...-++-.+..=.+.-...+..-+++ +.|.-||..+-+ +++.+---.....|-++....-..+..+....-.-
T Consensus 362 ~al~dvr~i~e~k~nve~elqsL~~l~aerq-eQidelKn~if~-~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q 439 (1265)
T KOG0976|consen 362 MALMDVRSIQEKKENVEEELQSLLELQAERQ-EQIDELKNHIFR-LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ 439 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh-hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001241 694 IEELMVQRQKLEEQRQLLHADREEIQAESERL 725 (1116)
Q Consensus 694 IeeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl 725 (1116)
.+-..+|-.--+--|+--+.--+..+++|.-+
T Consensus 440 ~s~fk~Lke~aegsrrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 440 LSNFKVLKEHAEGSRRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred HhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHH
No 88
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.96 E-value=89 Score=34.51 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001241 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1116)
Q Consensus 443 Eel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1116)
+.|..+..+..+....+......+..--+++++.++++..+-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999999999999999999888888888888777776666655555555444444333
No 89
>PRK12705 hypothetical protein; Provisional
Probab=75.37 E-value=2.1e+02 Score=35.18 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001241 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1116)
Q Consensus 350 K~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1116)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...+..+++++..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444332 222444444444444444444444444444444444444443
No 90
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.24 E-value=1.1e+02 Score=31.82 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=64.9
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001241 468 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (1116)
Q Consensus 468 ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 547 (1116)
+-.+.|+.++.+.+=+-.-=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444333222345567788888888999999999999999999999999999999999999997777776
Q ss_pred Hhhhhhhhh
Q 001241 548 KSLKDERDS 556 (1116)
Q Consensus 548 k~~~~E~er 556 (1116)
+-+.....+
T Consensus 87 k~lq~~q~k 95 (140)
T PF10473_consen 87 KELQKKQEK 95 (140)
T ss_pred HHHHHHHHH
Confidence 665544333
No 91
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.34 E-value=1e+02 Score=31.05 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=55.7
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001241 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1116)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk 474 (1116)
|.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666655554444 447888889999999999999999999999999888888876
No 92
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=73.66 E-value=1.7e+02 Score=33.44 Aligned_cols=66 Identities=26% Similarity=0.396 Sum_probs=44.5
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--------------hhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 001241 643 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMD--------------RQRRDREWAELNNSIEELMVQRQKLEEQR 708 (1116)
Q Consensus 643 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~--------------ke~le~e~aEm~kdIeeL~~ls~KLk~QR 708 (1116)
.-|++=|.+=.....||+.|.--+.+|++|......- +..++.+..-+.+-|+.|..|-+-|+.+|
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4577788888999999999999999999998765444 44444444444444444444444444443
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=72.89 E-value=54 Score=37.32 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=9.1
Q ss_pred HHHHHHHhhHHHHHHH
Q 001241 685 REWAELNNSIEELMVQ 700 (1116)
Q Consensus 685 ~e~aEm~kdIeeL~~l 700 (1116)
-.|.||+-=.....-|
T Consensus 166 V~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 166 VEWNEINAAWGQTALL 181 (314)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 3788888766655443
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.04 E-value=2.3e+02 Score=34.20 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001241 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1116)
Q Consensus 443 Eel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1116)
..|...+..|+--++.+....-.....+.+|..+..|+.. +..+|-.++..-+...++|-+.+..|+.+.++-|.+
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333444444444445555566666655543 446777777777888888888888888888776654
No 95
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.76 E-value=3.6e+02 Score=35.94 Aligned_cols=131 Identities=21% Similarity=0.156 Sum_probs=80.1
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001241 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL-------QKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 468 (1116)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L-------~~eKEel~~lK~dlEK~ra~~e~q~~qi~e 468 (1116)
|.++.+-|.+.=.++....-.|...+|.|.-+.+++..+.... ..+.+.+..+-.......+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443332222 224445555555555556666666666666
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001241 469 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 526 (1116)
Q Consensus 469 e~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 526 (1116)
....|.-..-|.+-+.-+-.+||+++-+|=-|-..+..=++.|.+.+-..|.|-..|=
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666666666788999988888888888888888888888888877664
No 96
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.31 E-value=63 Score=36.83 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001241 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (1116)
Q Consensus 479 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk 512 (1116)
+.+.+..-...+.++.+.+-.|........|.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777777777777765
No 97
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.61 E-value=1.3e+02 Score=36.55 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001241 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1116)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 571 (1116)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++-.+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888888888887777776665544 45556666666667776666
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 001241 572 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 623 (1116)
Q Consensus 572 lEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRq 623 (1116)
-+.++.+.-+--. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 5555544443322 33477777666655554443
No 98
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.65 E-value=2.1e+02 Score=32.08 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001241 339 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 410 (1116)
Q Consensus 339 ldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 410 (1116)
||-...-|..+..++.-.|.. +..++..-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k----~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKK----AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333332 33455566666677777777777777766666655555554444444
No 99
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=65.99 E-value=2.6e+02 Score=32.42 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 001241 615 LENCIEKRREELESSFREREKAFEE 639 (1116)
Q Consensus 615 LE~~iqkRqEEiE~~L~EREk~FEe 639 (1116)
-|..+-.+..+++..|..+.++-+.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777666543
No 100
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.57 E-value=1.5e+02 Score=32.85 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=52.8
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH
Q 001241 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241 (1116)
Q Consensus 162 ~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee 241 (1116)
|+.+..+.+.+|...+.....+.........+-..++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666665555555555555555555544444444444444433333333222222211111222222333
Q ss_pred HHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHH
Q 001241 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 282 (1116)
Q Consensus 242 RL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~ 282 (1116)
.+.+.+..+.+-.+-...++.....++.+|..++.....+.
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555556666665555444443
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.95 E-value=61 Score=36.30 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=67.3
Q ss_pred hhhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001241 480 AGELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER 554 (1116)
Q Consensus 480 R~E~lrLQ-----seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~ 554 (1116)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34455566 899999999999999999999999999999999999999999999999988887765543 466
Q ss_pred hhhHHHHHHHHH
Q 001241 555 DSLRQERDAMRD 566 (1116)
Q Consensus 555 erLK~EK~~~r~ 566 (1116)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766655544
No 102
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=64.71 E-value=4.5e+02 Score=34.71 Aligned_cols=146 Identities=12% Similarity=0.184 Sum_probs=66.3
Q ss_pred HHHHHhhHhhhhhhhhHHHHHHhHHHH-----------HHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh
Q 001241 107 AEARKREESLKKTLGVEKECIASLEKA-----------VHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 175 (1116)
Q Consensus 107 sEaeKREEnLkKALgvEKqCVadLEKA-----------L~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~a 175 (1116)
+....|.+-|.+.+|++.-- .+... +..++.....+-..++..++....-+..+......+...+-.
T Consensus 164 a~~~eR~~il~~l~g~~~y~--~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~ 241 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYG--QISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQ 241 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999854 34444 445555555444444444444433333333333332222222
Q ss_pred hhHHHH------HHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-----hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 001241 176 AESLQA------EANRYHRSAERKLQEVVAREDDLSRRIASFK-----ADCEEKEREIIRERQSLSDRKKILQQEHERLL 244 (1116)
Q Consensus 176 Aeak~A------Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-----~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~ 244 (1116)
+...+. +.......+...+..+..........+..+. ......-..+...+..+...+..+...+..+.
T Consensus 242 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (1047)
T PRK10246 242 QQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQ 321 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 0001111222222222222222222222221 11223444455556666666666666666666
Q ss_pred HHhhhhhhhh
Q 001241 245 DAQTLLNERE 254 (1116)
Q Consensus 245 e~q~~LNqRE 254 (1116)
..+..+....
T Consensus 322 ~~~~~~~~~~ 331 (1047)
T PRK10246 322 STMALRARIR 331 (1047)
T ss_pred HHHHHHHHHH
Confidence 6655555444
No 103
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.47 E-value=4.4e+02 Score=34.54 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=47.7
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001241 260 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1116)
Q Consensus 260 ~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1116)
-...++..-++|++.=+..-++++.|++.-++|+.++-..+..-.+...-......+..+|..+. .++++|.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~--------~e~k~l~ 750 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAAL--------SENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHH--------HHHHHHH
Confidence 34445555566666666666778888888888888888777666665555555555555555443 4555555
Q ss_pred HHh
Q 001241 340 ANH 342 (1116)
Q Consensus 340 deh 342 (1116)
.+|
T Consensus 751 ~~q 753 (970)
T KOG0946|consen 751 NDQ 753 (970)
T ss_pred HHH
Confidence 443
No 104
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=64.02 E-value=1.8e+02 Score=32.24 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001241 628 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 707 (1116)
Q Consensus 628 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 707 (1116)
..++.+-..|+.-+..-++.+.+++..- +=+++..-|+..|..|| ...-+++-.|+.||..|.+.=+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888887776654 44555555555555555 455677888999999999888888877
Q ss_pred HHHHH
Q 001241 708 RQLLH 712 (1116)
Q Consensus 708 RE~~~ 712 (1116)
|....
T Consensus 76 r~~~~ 80 (230)
T PF10146_consen 76 RNKRQ 80 (230)
T ss_pred HHHHH
Confidence 76643
No 105
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=63.77 E-value=2.2e+02 Score=33.23 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001241 448 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (1116)
Q Consensus 448 lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 527 (1116)
|-..|+.-...+.+---+++.+..+|..-..++.|+.+ ....+=|+.+++|..+|+..++ .+++++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455566666777778899999999999999999998 4567889999999999987665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001241 528 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (1116)
Q Consensus 528 KRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 579 (1116)
+--.|..=+.+|..==.-++|+++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777766554 678888888888888877653
No 106
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=63.76 E-value=1.3e+02 Score=35.37 Aligned_cols=220 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCccc---ccCCCccccCCCCcHHHHHHHHHccC-ChHHHhhhcHHHHHHHHHHHHHHH---------------hhh
Q 001241 3 SPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAALIAYIAKLETEI---------------FEH 63 (1116)
Q Consensus 3 ~p~~~~l~---~~~g~rvl~~~~~d~~iWkr~~eaG~-De~S~~rrD~~aLia~IskLE~El---------------ydY 63 (1116)
+|-.|.+. |..|+.|-.+. .-=+|....+ -.-..-.-...+|-+.+++|++++ +.|
T Consensus 64 ~~~~G~v~~i~V~eG~~V~~G~-----~L~~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~ 138 (457)
T TIGR01000 64 STSNNAIKENYLKENKFVKKGD-----LLVVYDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGY 138 (457)
T ss_pred cCCCcEEEEEEcCCCCEecCCC-----EEEEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhH
Q ss_pred hhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhh-hHHH-------HHHhHHH---
Q 001241 64 QHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG-VEKE-------CIASLEK--- 132 (1116)
Q Consensus 64 QyNMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALg-vEKq-------CVadLEK--- 132 (1116)
+..+-...-+..-+.+.+.+.++.+......+..+.+..-..+..++.+-.+++..+. ++++ =...|.+
T Consensus 139 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (457)
T TIGR01000 139 RNLFNGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQ 218 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHH
Q ss_pred -HHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh-HHHHHHhH
Q 001241 133 -AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED-DLSRRIAS 210 (1116)
Q Consensus 133 -AL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~-~LrRerlS 210 (1116)
.+..++.+...--+.+. .++++..-+..+.....++...+..+.+.++- +.-++++.++..+..... ....+.-.
T Consensus 219 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~ 295 (457)
T TIGR01000 219 AQLKSASDKDQKNQVKST-ILATIQQQIDQLQKSIASYQVQKAGLTKSTAS--NYASSQNSKLAQLKEQQLAKVKQEITD 295 (457)
T ss_pred HHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCCccc--hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHHHHHHHhchH
Q 001241 211 FKADCEEKEREIIRERQSLS 230 (1116)
Q Consensus 211 f~~E~ea~E~~~~~qRe~L~ 230 (1116)
..++....+.++..-+..|.
T Consensus 296 ~~~~l~~~~~~l~~a~~~l~ 315 (457)
T TIGR01000 296 LNQKLLELESKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHh
No 107
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=61.87 E-value=1.2e+02 Score=38.18 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=50.7
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001241 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1116)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 540 (1116)
.+..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|+.-..|++++..=.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455556666677777777888888888888888877776 455566777888888888887776544
No 108
>PLN03188 kinesin-12 family protein; Provisional
Probab=61.10 E-value=3.6e+02 Score=36.73 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=88.3
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHH-HH------hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Q 001241 111 KREESLKKTLGVEKECIASLEKAVHE-IR------AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183 (1116)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~e-mr------~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa 183 (1116)
-+-|.||--|..||.|...|.-||+- |. +-||+.-=..-.=|+--+.++++|. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 45578999999999999999999963 32 2333322222222233333333332 223333322
Q ss_pred hcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH-----H---------HHHHHHhhh
Q 001241 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE-----H---------ERLLDAQTL 249 (1116)
Q Consensus 184 ~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~-----e---------eRL~e~q~~ 249 (1116)
.+|.. + -|=+.+|.+|.-+...+-.++|+.|++=-|.||.- + =||-++..-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 13344555555555555566677776666666532 1 244445555
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001241 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1116)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1116)
+.-=+++++.-.++-...-|.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777787777888888888888888777776
No 109
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.01 E-value=5.5e+02 Score=34.53 Aligned_cols=221 Identities=22% Similarity=0.284 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----
Q 001241 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ---- 567 (1116)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~---- 567 (1116)
.++|.++.+++-|+.+..++.. +.+ |-....-|..-|+..+.+..-+-+.+.+. .+.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~----l~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRS----LEQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555 333 44444455555555555544444444422 23344555555544
Q ss_pred ------HHhhhhhhhhhHHHHHHhhhhhhhhHHH----------------HHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 001241 568 ------HKRDVDSLNREREEFMNKMVHEHSEWFT----------------KIQQERADFLLGIEMQKRDLENCIEKRREE 625 (1116)
Q Consensus 568 ------~krelEsL~~ekEsF~~kMehErs~~~e----------------Kiq~Erad~l~d~EmqkreLE~~iqkRqEE 625 (1116)
++|.++.......+...+|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+.
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~- 802 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ- 802 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec-
Confidence 3455555555555555555421122211 12888888888999999999888864433
Q ss_pred HHhHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHH
Q 001241 626 LESSFR---EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ 702 (1116)
Q Consensus 626 iE~~L~---EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~ 702 (1116)
++.+ +|.+.+=+.-+.+++.+---.+.+.+++-.+ .+|.. ++ ..-=+..+.+|.+.++...-|+..-.
T Consensus 803 --~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~t 873 (1141)
T KOG0018|consen 803 --KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELT 873 (1141)
T ss_pred --ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3444455555666666666666666666666 44443 22 22234556677777777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001241 703 KLEEQRQLLHADREEIQAESERLKKLEDLK 732 (1116)
Q Consensus 703 KLk~QRE~~~~ERe~fl~~vEklK~ckncg 732 (1116)
||..++-..-..++++.. |.+.-+..|+
T Consensus 874 kl~~~i~~~es~ie~~~~--er~~lL~~ck 901 (1141)
T KOG0018|consen 874 KLDKEITSIESKIERKES--ERHNLLSKCK 901 (1141)
T ss_pred HHhhhhhhhhhHHHHHHH--HHHHHHHHhh
Confidence 777666666665555543 2333344554
No 110
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=60.57 E-value=4e+02 Score=32.72 Aligned_cols=411 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhh
Q 001241 211 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS 290 (1116)
Q Consensus 211 f~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~ 290 (1116)
|.+|-.+..=.|.+-+..+.+-+..|...++.+.....-|++=-+.-..+...+........+.++.+-.-+-.+=.
T Consensus 89 ~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~--- 165 (569)
T PRK04778 89 FEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGP--- 165 (569)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc---
Q ss_pred hhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHH
Q 001241 291 NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 370 (1116)
Q Consensus 291 dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~ 370 (1116)
+++.++..|..-|.+...|.+=-++=.=++-..++..
T Consensus 166 --------------a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~----------------------------- 202 (569)
T PRK04778 166 --------------ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQ----------------------------- 202 (569)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------------------------
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH---------HHHHHhHHHHHHHHHH
Q 001241 371 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI---------AFEKEADLKKSLLQKE 441 (1116)
Q Consensus 371 K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk---------aeEK~le~ek~~L~~e 441 (1116)
.+..+..-++.++.==.=+++..+.|=+-+..|+.==+.|. ..+++|..=+.+|..-
T Consensus 203 --------------l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 203 --------------LEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH-------
Q 001241 442 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE------- 514 (1116)
Q Consensus 442 KEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~e------- 514 (1116)
...|..+ +|....+.+..=..+|+.--+.|+--..-+...-.....+..-|++.+.+-..|..|.+.|++.
T Consensus 269 ~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 269 LALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Q ss_pred ---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhh
Q 001241 515 ---KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 591 (1116)
Q Consensus 515 ---KekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs 591 (1116)
...|+++-+.|...-..+..........-..+..-+. .+...++.+.-++.+|.+.+.
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le---------------el~e~leeie~eq~ei~e~l~---- 407 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE---------------EILKQLEEIEKEQEKLSEMLQ---- 407 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001241 592 EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 671 (1116)
Q Consensus 592 ~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLek 671 (1116)
.=+.-|..+.++...+...|. +-++.-+..++..+=+-.-.-...+.-++.+|..
T Consensus 408 -------------------~Lrk~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 408 -------------------GLRKDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhhh
Q 001241 672 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH---ADREEIQAESERLKK 727 (1116)
Q Consensus 672 ER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~---~ERe~fl~~vEklK~ 727 (1116)
+......|-...+.+..+...+++.|..+..-|-+...++- ..+++|.........
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~ 521 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAE 521 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
No 111
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.20 E-value=2.5e+02 Score=30.24 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=52.6
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001241 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1116)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1116)
+.+...++......+....+.++..+..++.-+..|......+...-.......+.+......+...+..+..++..+..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555555333333444455566666777777777777777777
Q ss_pred hhhHHHHHHHH
Q 001241 330 KESNEIQKIIA 340 (1116)
Q Consensus 330 RE~~EIQKLld 340 (1116)
+-+.-++.|..
T Consensus 145 ~r~~l~~~l~~ 155 (302)
T PF10186_consen 145 RRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHH
Confidence 77666665543
No 112
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=59.82 E-value=4e+02 Score=32.52 Aligned_cols=66 Identities=23% Similarity=0.224 Sum_probs=43.6
Q ss_pred hhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001241 259 SKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL 327 (1116)
Q Consensus 259 e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL 327 (1116)
.+...+..+-.+|..++.-++..+.+-.+-+ ..++..+..++.....++..|...+++|..|...+
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAe---ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAE---EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666767666666655433322 34555556677777888888888888888887777
No 113
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.70 E-value=3e+02 Score=30.58 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001241 449 KSDLQKSLSSLDEKKKQVNCAKDKLEAM 476 (1116)
Q Consensus 449 K~dlEK~ra~~e~q~~qi~ee~E~Lkit 476 (1116)
...|...+.+..+++++|++....|+.+
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777777777777666543
No 114
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.93 E-value=3.5e+02 Score=30.42 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=21.4
Q ss_pred hhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhh
Q 001241 200 REDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248 (1116)
Q Consensus 200 RE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~ 248 (1116)
+...+..+...+.++...++..+..-+..+..++..+...+..+...+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 131 QQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444443333
No 115
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=53.98 E-value=2.8e+02 Score=29.04 Aligned_cols=65 Identities=20% Similarity=0.340 Sum_probs=45.9
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhh---------HHHHHHHHHhchHHHHHHHH
Q 001241 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEE---------KEREIIRERQSLSDRKKILQ 237 (1116)
Q Consensus 170 E~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea---------~E~~~~~qRe~L~eweKkLq 237 (1116)
..|+..|...+.++.++...+.+++..+.. .++.+.-.|..++-. .+..|..+++.+..|+.-+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 455566666667777777777777777754 367777777766432 45678899999999998764
No 116
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=53.71 E-value=4.1e+02 Score=30.76 Aligned_cols=126 Identities=12% Similarity=0.093 Sum_probs=66.3
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH---------hhhhHHHhhhhhHHHHHHhHhhhhhh
Q 001241 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA---------ERKLQEVVAREDDLSRRIASFKADCE 216 (1116)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~a---------eRKL~eVEaRE~~LrRerlSf~~E~e 216 (1116)
...+.|...+.....-+++..-++..+|.+|+..+..--+++.-. ..+|.++..+-...+.++....+-..
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777788888888888888888888887766665432 23344444443333333322211111
Q ss_pred hHHH-----HHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001241 217 EKER-----EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1116)
Q Consensus 217 a~E~-----~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1116)
.... .+ -.-..+......|.+.+..+.+....+...-..+......+...++.|.
T Consensus 240 ~~~~~~~~~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 240 GSSGKDALPEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred ccCCcccchhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 0000 00 0001233444555555666666555555555555555555555554443
No 117
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.15 E-value=1.9e+02 Score=36.97 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=27.5
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh
Q 001241 141 SAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 175 (1116)
Q Consensus 141 ~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~a 175 (1116)
..+|+=.|+..|...+..+..++....+.-.++..
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~ 176 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIR 176 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999888877776655544
No 118
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.06 E-value=8e+02 Score=33.63 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001241 685 REWAELNNSIEELMVQRQKLEEQRQLLHAD 714 (1116)
Q Consensus 685 ~e~aEm~kdIeeL~~ls~KLk~QRE~~~~E 714 (1116)
.--.|++| +-+|..++.+|.+.|....++
T Consensus 1015 kkE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1015 KKEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 33457788 999999999999888765544
No 119
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=51.68 E-value=4e+02 Score=30.06 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001241 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 570 (1116)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~e-Ere~lek~~~~E~erLK~EK~~~r~~~kr 570 (1116)
+||+++-.|-.++.+....+.+....||++=+.|--+-++-++.-.+.+. .+..|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888888877777776654 3556777777777777555 55666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001241 571 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1116)
Q Consensus 571 elEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 608 (1116)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 4555666665555566666555555554
No 120
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.97 E-value=3.3e+02 Score=34.92 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=55.7
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 001241 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (1116)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EI 335 (1116)
++.+..+.+-.=..-++.|+..+......+.+--.+|...-..+-.+.+++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555544444333333333333333333444445555555556666666666666666666667
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHH
Q 001241 336 QKIIANHESALRVKQSEFEAELAIK 360 (1116)
Q Consensus 336 QKLldeh~a~L~~KK~EFElElE~k 360 (1116)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666666655544433333
No 121
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.46 E-value=6.1e+02 Score=31.82 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhh----hhhhhhHHHHHHHHHhhhhHHHHHhhhhhhH
Q 001241 109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVA----ADSKFAEARCMVENAQKKFAEAEAKLHAAES 178 (1116)
Q Consensus 109 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~t----sesKLaEA~aLv~~~eeKslEvE~KL~aAea 178 (1116)
...|-..+++.| ...|.+|...+.++.-+-.. ++.+|++.+.-...++-....+++.+.....
T Consensus 199 L~~ql~~l~~~l-------~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 199 LAPEIADLSKQS-------RDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555443 34577777777766654321 1234444444444444444444444443333
No 122
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=50.25 E-value=5.2e+02 Score=30.99 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=14.4
Q ss_pred ccCCCCcccccCC-CCCCCCCCCcccccc
Q 001241 818 KHSGENSVENDEE-KSPTSDHEDASLTIN 845 (1116)
Q Consensus 818 k~SP~Kk~~~~~e-~~~~s~~~~~~~~~~ 845 (1116)
.+||+-++..+.- .+++|.--..+++|.
T Consensus 420 slspS~~ASSSlt~~pcSSPV~~k~llGs 448 (561)
T KOG1103|consen 420 SLSPSLPASSSLTPRPCSSPVKKKPLLGS 448 (561)
T ss_pred ccCCCCcccccCCCCCCCCcccccccccc
Confidence 3566666555533 344444444555553
No 123
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.15 E-value=3.6e+02 Score=29.09 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=89.6
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHH----HHHHHhh
Q 001241 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKH 97 (1116)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~e----ae~~lKR 97 (1116)
.+|+||..+. ++..--+--|+. .|--+|-.++..|-...-.+.-++-.++-..-+|+++...++. |+.+|+.
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4899998765 566666778999 8888999999999999999999999999999988888776653 3444442
Q ss_pred hhh-hhhhHHH---HHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhh
Q 001241 98 DRA-SHLSAIA---EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAAD 149 (1116)
Q Consensus 98 Eqa-Ahl~ALs---EaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tse 149 (1116)
-.- ----||. .++..=..|...+.--+.-|..|..-|++|+..+.++|..-.
T Consensus 82 G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 82 GREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111222 223344556666777778888899999999998888876544
No 124
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=49.51 E-value=6e+02 Score=31.48 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=65.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001241 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1116)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 555 (1116)
+.+-|.|--.||++||.=--.|++=.+.-+.|. ++|-+|=-.|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777889999988888888778888876 6788888888877765555556777888888888888888888
Q ss_pred hhHHHHHHH
Q 001241 556 SLRQERDAM 564 (1116)
Q Consensus 556 rLK~EK~~~ 564 (1116)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888754
No 125
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.16 E-value=2.9e+02 Score=27.68 Aligned_cols=97 Identities=27% Similarity=0.299 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001241 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1116)
Q Consensus 443 Eel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 522 (1116)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555566666666666666666666644211111111222256777777788888888888888877777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 001241 523 EMIDEKREELRKEAERVAVE 542 (1116)
Q Consensus 523 E~LDEKRael~KEa~~I~eE 542 (1116)
+ +-+..|+++...+..-
T Consensus 97 ~---~qk~~le~e~~~~~~r 113 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQR 113 (132)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 5 3455555555554433
No 126
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.58 E-value=6.6e+02 Score=31.70 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 001241 437 LLQKEKEEVNIIKSDLQKSLSSLDEKK 463 (1116)
Q Consensus 437 ~L~~eKEel~~lK~dlEK~ra~~e~q~ 463 (1116)
.+...++....|+.|+.|..+.+.+-+
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~ 286 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMK 286 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444555556666555554433
No 127
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.53 E-value=5.1e+02 Score=30.38 Aligned_cols=206 Identities=26% Similarity=0.325 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 001241 436 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 501 (1116)
Q Consensus 436 ~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~l--------------rLQseLKeEId~~R~Qk 501 (1116)
..|++-.+-|..|-.+|++.+.+-..=+..+.+=+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 4566666777777777777766666666666655544444443333322 12234444455555555
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHHHhhhhhhhhh
Q 001241 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMR---DQHKRDVDSLNRE 578 (1116)
Q Consensus 502 e~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r---~~~krelEsL~~e 578 (1116)
.-|..|.+.|++...--..+--+|-++-+..+-....+. ..-+. .|++.|=..-..++ .++++++-++--+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-----~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-----ARHFP-HEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-----ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555555445555555544444332222221 00000 22222222222222 2344555555555
Q ss_pred HHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001241 579 REEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLKEK 654 (1116)
Q Consensus 579 kEsF~~kMehErs~~~eKi---q~Erad~l~d~EmqkreLE~~-iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~ 654 (1116)
+++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+||--|.+
T Consensus 156 keEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 156 KEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 3455544443 345566665544433333332 233 599999999999999999999988877
Q ss_pred HHH
Q 001241 655 AEK 657 (1116)
Q Consensus 655 a~k 657 (1116)
+.+
T Consensus 226 le~ 228 (319)
T PF09789_consen 226 LER 228 (319)
T ss_pred HHh
Confidence 653
No 128
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.49 E-value=8.9e+02 Score=33.15 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001241 613 RDLENCIEKRREELESSFREREKA-FEEEKMREF-QQISSLKEKAEKELEQVTLEIKRLDL 671 (1116)
Q Consensus 613 reLE~~iqkRqEEiE~~L~EREk~-FEeek~~EL-~~IN~lkE~a~kE~Eev~lE~~rLek 671 (1116)
-.|=..|....++.+..|.|||+. ||+=-..++ .+|...--.|+.=+..|.-.|.++..
T Consensus 1085 ~~l~~~l~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1085 AGLLARLEQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677888888888999999875 666555444 34555666666667777777776665
No 129
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=47.77 E-value=1.9e+02 Score=38.24 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.6
Q ss_pred hheehhhhhhhHHHH
Q 001241 70 LILEKKELASKYEQI 84 (1116)
Q Consensus 70 LLiEkKEwtSK~EeL 84 (1116)
+++|-=...+=++-|
T Consensus 91 IVMEY~~gGSL~~lL 105 (1021)
T PTZ00266 91 ILMEFCDAGDLSRNI 105 (1021)
T ss_pred EEEeCCCCCcHHHHH
Confidence 556543333333333
No 130
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.60 E-value=6e+02 Score=30.91 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=10.8
Q ss_pred HhHHHHHHhhhhhhhhhH
Q 001241 668 RLDLERMEINMDRQRRDR 685 (1116)
Q Consensus 668 rLekER~Ei~~~ke~le~ 685 (1116)
.|-.||.-+...-+++..
T Consensus 410 ~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHhhhhhccccHHHHHH
Confidence 555666666666555554
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=47.00 E-value=3.6e+02 Score=28.16 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHH
Q 001241 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 311 (1116)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~ 311 (1116)
|+++-....+-|-..++--.-=+.||..-.+.|...+..++.+..-.+.+...+..-+..|......+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888877666667788888888888888888888877777777777777777777777777888888888
Q ss_pred HHHHhHHhHHHHHHHHhhhh
Q 001241 312 SLQKKEQKLLVSQETLASKE 331 (1116)
Q Consensus 312 ~Le~KEkELl~leEKL~aRE 331 (1116)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776544
No 132
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=46.98 E-value=8.4e+02 Score=32.41 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=81.4
Q ss_pred HHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhh
Q 001241 137 IRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCE 216 (1116)
Q Consensus 137 mr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~e 216 (1116)
+|.|.|.. -.+-+.+..|+-+|.+++.|.+-.+.+.-.-.-+.++.--.|.++.+|+.+|--.-..-+
T Consensus 391 Lr~elaql-~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~----------- 458 (980)
T KOG0980|consen 391 LRNELAQL-LASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAE----------- 458 (980)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 44555543 234456666777778888888777777777777777777778888888877654333222
Q ss_pred hHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhH
Q 001241 217 EKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 296 (1116)
Q Consensus 217 a~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl 296 (1116)
++.-+-++...+....|.+.++-...=+-+..+....+...+++|..+...++.--.++..-...-+..+
T Consensus 459 ----------~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~ 528 (980)
T KOG0980|consen 459 ----------QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQL 528 (980)
T ss_pred ----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2222344444444444444443333333344444455555555555444444443333333333333344
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 001241 297 VSLLKREEAVIEREASLQK 315 (1116)
Q Consensus 297 ~~l~~rEee~~~~~~~Le~ 315 (1116)
+.|...++.-|..-..+-.
T Consensus 529 ~~l~~~l~~KD~~~~~~~~ 547 (980)
T KOG0980|consen 529 AQLEDLLKQKDRLAAELVA 547 (980)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 4444444433333333333
No 133
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.70 E-value=3.1e+02 Score=29.39 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=14.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 001241 449 KSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGE 482 (1116)
Q Consensus 449 K~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E 482 (1116)
+..++++...++.-..+|...+..+..++..|.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3333344444444444444444444444444443
No 134
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.67 E-value=4.1e+02 Score=29.03 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001241 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 557 (1116)
Q Consensus 502 e~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erL 557 (1116)
..|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445555555555555555555555555554444433
No 135
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=46.66 E-value=4.7e+02 Score=29.38 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.4
Q ss_pred HHHhHHHHH
Q 001241 126 CIASLEKAV 134 (1116)
Q Consensus 126 CVadLEKAL 134 (1116)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 136
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.53 E-value=4.1e+02 Score=28.64 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001241 490 LKEELDVVRAQKLE 503 (1116)
Q Consensus 490 LKeEId~~R~Qke~ 503 (1116)
|...+...|.+.-.
T Consensus 138 l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 138 LQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 137
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=45.84 E-value=65 Score=35.23 Aligned_cols=49 Identities=33% Similarity=0.445 Sum_probs=27.0
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001241 676 INMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 724 (1116)
Q Consensus 676 i~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEk 724 (1116)
+..+.+.|..+|.++++....|..-.++|.+-|.+|-+||+.|...+.+
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e 84 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQ 84 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555554443
No 138
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=45.73 E-value=3.5e+02 Score=27.71 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=29.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001241 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 508 (1116)
Q Consensus 472 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEa 508 (1116)
.++.++.|-.+|++|=..|-.-+.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4466788999999999999999999998877664444
No 139
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.72 E-value=1.9e+02 Score=26.79 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=49.9
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001241 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1116)
Q Consensus 452 lEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 528 (1116)
+++..++=.++..++-++=++|-.++ .++-.-|.++|.+-..+.+....|+...+..+.+-+.|-++
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666665554 88888999999999999999999998888888877766543
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.37 E-value=3.2e+02 Score=29.30 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001241 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (1116)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 567 (1116)
.+|+.+|+.++.....|....+.++..|.-. .|-..+-++..+|+++.+.+..+=.++..+=..--+.++.+.....+.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777766655 233333344444444444444333333333333344444444444444
Q ss_pred HHhhhhhhhhhHHHH
Q 001241 568 HKRDVDSLNREREEF 582 (1116)
Q Consensus 568 ~krelEsL~~ekEsF 582 (1116)
..|=-+.+-.-+.-+
T Consensus 151 anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 151 ANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHhhHHHHHHHH
Confidence 444444443333333
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.31 E-value=2.1e+02 Score=30.15 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001241 216 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1116)
Q Consensus 216 ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl 292 (1116)
.+.+..+...|++|.+-.|.--+...+|.....-|...+..+.+....+..++.++..++.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888877777776655555555544433
No 142
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.22 E-value=29 Score=37.64 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.2
Q ss_pred HHHHHHHHHhccCCCCccccc
Q 001241 808 WIKRFADLVFKHSGENSVEND 828 (1116)
Q Consensus 808 WlrKCTskIFk~SP~Kk~~~~ 828 (1116)
||++.+.+|=+++==++...|
T Consensus 69 wLq~~v~kinnlglF~s~~NH 89 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANH 89 (224)
T ss_pred HHHHHHHHhhcccccCCCcce
Confidence 999999999777655555555
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.01 E-value=5.3e+02 Score=31.79 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001241 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 466 (1116)
Q Consensus 389 l~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi 466 (1116)
+..+.+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|++.|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456677777777888888888888888887777776433 22344444444444444444444455555555543
No 144
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=44.97 E-value=4.5e+02 Score=28.70 Aligned_cols=111 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHH
Q 001241 581 EFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE--EEKMREFQQISSLKEKAEKE 658 (1116)
Q Consensus 581 sF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE--eek~~EL~~IN~lkE~a~kE 658 (1116)
+|+.+=.+++..-..++...-.+-...++-.|.+|......+..+++..|-++++.+- ...-..|..|..+|+...+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH--------hhhhhhhhhHHHHHHH
Q 001241 659 LEQVTLEIKRLDLERME--------INMDRQRRDREWAELN 691 (1116)
Q Consensus 659 ~Eev~lE~~rLekER~E--------i~~~ke~le~e~aEm~ 691 (1116)
|..+.-++.++..+-.+ .-..|.+++.+..+++
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 145
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.92 E-value=2.5e+02 Score=28.86 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001241 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1116)
Q Consensus 443 Eel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lk 474 (1116)
+++..|..+|..++..+..-...+......|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333333333
No 146
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.43 E-value=4.7e+02 Score=33.59 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=19.4
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHh
Q 001241 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAK 172 (1116)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~K 172 (1116)
+..+++-.|...|...+.-+..++.+..+.-.+
T Consensus 136 ~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 136 DDGKVKDGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred CCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666555554333
No 147
>PRK11281 hypothetical protein; Provisional
Probab=41.24 E-value=1.1e+03 Score=32.06 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=61.3
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHH-----------HhhcHHHHHHHHh
Q 001241 218 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA-----------SRANVEEKFKALN 286 (1116)
Q Consensus 218 ~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe-----------~kkkie~~~~~Lk 286 (1116)
.|..+..-...|.+|+..|.+....|...|...-..-..+.++.+.+.+....|.. .+..+..+...|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 55666666667777777777777777666655555555556666666666555532 2333344444443
Q ss_pred hhhhhhhHhHHHhhhh----HHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001241 287 EEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1116)
Q Consensus 287 ~ke~dl~~rl~~l~~r----Eee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1116)
-+-+-...-+.+-+.+ -...+-....+..-|..+..||+.++.|-..+-++-+
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~ 262 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTV 262 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222221111 1122333344455555566666666665555444433
No 148
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=41.23 E-value=7.8e+02 Score=30.45 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=18.8
Q ss_pred hhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHH
Q 001241 248 TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKA 284 (1116)
Q Consensus 248 ~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~ 284 (1116)
.+...++.-+..+...+..+|++-+++.++.+.....
T Consensus 185 ~l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~e 221 (489)
T PF05262_consen 185 ELREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKE 221 (489)
T ss_pred HHhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444455555555555666666555544444333
No 149
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=39.59 E-value=1.2e+03 Score=32.18 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=87.7
Q ss_pred HhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q 001241 603 DFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 682 (1116)
Q Consensus 603 d~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~ 682 (1116)
|-+++--.++++|+..++.+ +|..+.+..+.+.......|+... ...++-++..|..+++-++..+..
T Consensus 992 ~~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~ 1059 (1294)
T KOG0962|consen 992 QKIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNL 1059 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhH
Confidence 33556666777777777654 344445555566666666666554 556788999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHhHHhhhhHhhhh--hcccchh
Q 001241 683 RDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHS 751 (1116)
Q Consensus 683 le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg~~~~~~vLSdlq--~sd~~~~ 751 (1116)
+-++..++...|.-+...=.+ .+-+......|..++..---=.+|+++|...--.-.++|| ...|+.-
T Consensus 1060 ~lg~~ke~e~~i~~~k~eL~~-~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeei 1129 (1294)
T KOG0962|consen 1060 LLGEMKQYESQIKKLKQELRE-KDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEI 1129 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876543221 1222333344555554444445677777776644444555 5566543
No 150
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.45 E-value=6.2e+02 Score=32.57 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=54.9
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001241 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (1116)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~E 334 (1116)
.++.+..+.+-.-+.-++.|+..+......+.+--.+|......+-.+..++...+..++...++|....++|..+....
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556555556666666665555444444444444444444444445555555555666666666666666666666
Q ss_pred HHHHHHHhHHHHhhhhhhHH
Q 001241 335 IQKIIANHESALRVKQSEFE 354 (1116)
Q Consensus 335 IQKLldeh~a~L~~KK~EFE 354 (1116)
++++-.+.+.++..-+.+.+
T Consensus 563 ~~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 563 KLELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555554444333
No 151
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=38.68 E-value=3.1e+02 Score=36.42 Aligned_cols=7 Identities=14% Similarity=0.041 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 001241 132 KAVHEIR 138 (1116)
Q Consensus 132 KAL~emr 138 (1116)
.||..|+
T Consensus 129 ~ALaYLH 135 (1021)
T PTZ00266 129 HALAYCH 135 (1021)
T ss_pred HHHHHHH
Confidence 3444444
No 152
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=38.57 E-value=4e+02 Score=33.70 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHHHHHHHHh
Q 001241 585 KMVHEHSEWFTKIQQERADF 604 (1116)
Q Consensus 585 kMehErs~~~eKiq~Erad~ 604 (1116)
+++|||..-.++|-++|+++
T Consensus 681 ~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 681 KVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHhhcchhhhhhhhHHHH
Confidence 44455555555665555544
No 153
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=38.05 E-value=7e+02 Score=28.93 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=43.0
Q ss_pred HhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHH
Q 001241 190 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 269 (1116)
Q Consensus 190 aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEk 269 (1116)
++-.|.+++.|-.+|.-+---+.+|.++....+..||-..--- ..+.+.-|.....+-.|--+ .-++|.|-.-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q---~s~Leddlsqt~aikeql~k----yiReLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ---ESQLEDDLSQTHAIKEQLRK----YIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 4445666666666666666666677777776666666322211 22223333333333322223 3345556666
Q ss_pred HHHHHhhcH
Q 001241 270 ELEASRANV 278 (1116)
Q Consensus 270 eLEe~kkki 278 (1116)
+||-++...
T Consensus 123 dLErakRat 131 (333)
T KOG1853|consen 123 DLERAKRAT 131 (333)
T ss_pred HHHHhhhhh
Confidence 777666543
No 154
>PRK10698 phage shock protein PspA; Provisional
Probab=38.00 E-value=5.8e+02 Score=27.98 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=41.8
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHH
Q 001241 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKAS 87 (1116)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa 87 (1116)
.||+||..+. ++..--+--|+. .|--+|-.++..|.+-...+.-++-.+|...-+|+++...
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~ 67 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQ 67 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999876 566666777999 7777888888888776555555555555555555544443
No 155
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=37.86 E-value=8.4e+02 Score=29.81 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=24.2
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHH
Q 001241 286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQET 326 (1116)
Q Consensus 286 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEK 326 (1116)
......|..+--.++.|++.+-+++..|.--|..+.-||.-
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667776666666666666555555443
No 156
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.71 E-value=2.4e+02 Score=31.44 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=42.0
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001241 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1116)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 571 (1116)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+|+++...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555556666777777778888777776 79999999999999998653
No 157
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=37.63 E-value=1.1e+02 Score=30.58 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh--hhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001241 127 IASLEKAVHEIRAESAETKVAAD--SKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1116)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tse--sKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1116)
|+-|++||.++++.|...+..++ .|+.+.+.=|...+.-+.++-.+=.. .+.+.-.+|..++..+|+
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHh
Confidence 67799999999999987664433 34444444444444433333333222 333333344444444443
No 158
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=37.38 E-value=2.1e+02 Score=27.60 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=34.0
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001241 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1116)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 519 (1116)
+|..+.+-...++=|=.|+----..|.+|++..|+.+..|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444454444556667777777777777777777777766553
No 159
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.37 E-value=6.4e+02 Score=28.32 Aligned_cols=8 Identities=50% Similarity=0.405 Sum_probs=2.5
Q ss_pred hHHHHHHh
Q 001241 424 LIAFEKEA 431 (1116)
Q Consensus 424 LkaeEK~l 431 (1116)
|...+|.+
T Consensus 199 L~~~ek~~ 206 (297)
T PF02841_consen 199 LTEKEKEI 206 (297)
T ss_dssp S-HHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 160
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.79 E-value=1.3e+03 Score=31.84 Aligned_cols=156 Identities=17% Similarity=0.102 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhH
Q 001241 238 QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 317 (1116)
Q Consensus 238 e~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KE 317 (1116)
..++.|.++|...--=|..++...+.+..+++-+++++.++-.--.. -..-|+.+.+.+.....-|
T Consensus 1595 ~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~--------------A~~a~~~a~sa~~~A~~a~ 1660 (1758)
T KOG0994|consen 1595 LAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE--------------AKQAEKTAGSAKEQALSAE 1660 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445556666666666666666665543221111 1112334444444555555
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHH
Q 001241 318 QKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 397 (1116)
Q Consensus 318 kELl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe 397 (1116)
+.|..|+.....-.+-.-.+....+.|.-+++ .|-++-+.=..+-.-+=.+|+.+|-+....+++|+
T Consensus 1661 q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe-------------~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~ 1727 (1758)
T KOG0994|consen 1661 QGLEILQKYYELVDRLLEKRMEGSQAARERAE-------------QLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALE 1727 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55556665554443322222222222211111 11111111111112222456677777788888888
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHH
Q 001241 398 VQSRALVDKEKDLVERSHLLEEK 420 (1116)
Q Consensus 398 ~k~~~lkEKEkdl~~Ksk~LKEk 420 (1116)
.+...|.-.|+.+..-+..++++
T Consensus 1728 ~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1728 DKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhh
Confidence 88888888888888888877765
No 161
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=36.69 E-value=6.4e+02 Score=28.11 Aligned_cols=120 Identities=26% Similarity=0.373 Sum_probs=66.7
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001241 307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 386 (1116)
Q Consensus 307 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 386 (1116)
+.+-..|-++|.+|-..+++..+-|+.- ..|..+ + +-+...+++ |...+
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~-~eLeEe---------------~----~~~~~nlk~-----------l~~~e 132 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQS-EELEED---------------L----RILDSNLKS-----------LSAKE 132 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH---------------H----HHhHhHHHH-----------HHHHH
Confidence 3455678888999988888888777532 112111 1 111222222 33345
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001241 387 ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1116)
Q Consensus 387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e 460 (1116)
+++..++-..+.+++.+.+|=+.-+.+-... |++....+|.+..=-..+...++....++.+|-.+..+++
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555556666666655555444444443 3555555555555455566666666666666666665554
No 162
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=36.57 E-value=5.5e+02 Score=27.28 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=44.6
Q ss_pred HHHHHHHcc---CChHHHhhhcHHHHHH-HHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHH
Q 001241 27 IWKRLKEAG---LDEVSIKRRDKAALIA-YIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAE 89 (1116)
Q Consensus 27 iWkr~~eaG---~De~S~~rrD~~aLia-~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~ 89 (1116)
+|+||..+. ++..--+--|+..++. +|-.++..|=...-.++-.+-.++...-+|+++...+.
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~ 68 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE 68 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888765 4666666678887664 56777777777777777777777777777776665544
No 163
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.30 E-value=7.6e+02 Score=28.93 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=54.4
Q ss_pred hhhHhhHhhHHHHhHhHHHHHHHhhcHHH--HHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001241 252 EREDHILSKLQELSRKEKELEASRANVEE--KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1116)
Q Consensus 252 qREe~~~e~~~~l~~kEkeLEe~kkkie~--~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1116)
.|++.+.++.+.-...++++|+....--- -...|+-.-..+..|-.--..+| +..|..-++.+-.|||++-.
T Consensus 345 kr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqke------eeklk~e~qkikeleek~~e 418 (445)
T KOG2891|consen 345 KREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKE------EEKLKAEEQKIKELEEKIKE 418 (445)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666654432211 11333433334443333222222 23455566778889999999
Q ss_pred hhhHHHHHHHHHhHHHHhhh
Q 001241 330 KESNEIQKIIANHESALRVK 349 (1116)
Q Consensus 330 RE~~EIQKLldeh~a~L~~K 349 (1116)
.|..-.+-|+.-|.+-|...
T Consensus 419 eedal~~all~~qeirl~~~ 438 (445)
T KOG2891|consen 419 EEDALLLALLNLQEIRLIAE 438 (445)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 99988888888888776543
No 164
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.50 E-value=5.6e+02 Score=27.13 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=38.6
Q ss_pred hhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhh-------hHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001241 382 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHL-------LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454 (1116)
Q Consensus 382 l~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~-------LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK 454 (1116)
+...|+..-...++|..+...|.+-.+-|..+++. |.+.|-.|+.+.+.+ -..+++-+..++.-+++
T Consensus 80 l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 80 LLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555544444 444444444444444 34566777788888887
Q ss_pred hhhh
Q 001241 455 SLSS 458 (1116)
Q Consensus 455 ~ra~ 458 (1116)
.+..
T Consensus 154 ~k~~ 157 (158)
T PF09744_consen 154 QKDE 157 (158)
T ss_pred HHhc
Confidence 7654
No 165
>PRK11519 tyrosine kinase; Provisional
Probab=34.71 E-value=8.9e+02 Score=30.62 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=28.4
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001241 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1116)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ 189 (1116)
...+.|...|...++-+++...++..+|..|+..++.--+.+..
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44556666666667777777777777777777666665554443
No 166
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.60 E-value=1.1e+03 Score=30.03 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=17.5
Q ss_pred HhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHh
Q 001241 285 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQK 319 (1116)
Q Consensus 285 Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkE 319 (1116)
|..+...+..++..+...|.++..++...+..+.-
T Consensus 351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555444433
No 167
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.47 E-value=3.9e+02 Score=31.48 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001241 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 450 (1116)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~ 450 (1116)
+..+-..|++.|++|-+|+..||.-- .-+.++|+..+.+|..|.-.++.-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788888888887777532 23445677777777777766655444
No 168
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.48 E-value=7.4e+02 Score=27.56 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001241 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (1116)
Q Consensus 130 LEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerl 209 (1116)
|+-++++|+.++.+++-+...-++..+.+-..+..=...++.=-..|...+.-.+ +.=||+-.- ++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al~--~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREALE--EKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH--HHH
Confidence 7888999999999988888777777777776666655555554444554444333 223333222 344
Q ss_pred HhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhh
Q 001241 210 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248 (1116)
Q Consensus 210 Sf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~ 248 (1116)
++..-+.+++..+..+++.+-..++.+...+..+.+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777777777777777777766553
No 169
>PF14992 TMCO5: TMCO5 family
Probab=32.39 E-value=8.5e+02 Score=28.27 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001241 353 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1116)
Q Consensus 353 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1116)
+|-|+....-.+++. +..-.-.+.+|.++...|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 37 Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 37 LEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 334444444444433 2222223667777766665544444333333344466666666555553
No 170
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.29 E-value=5.8e+02 Score=26.34 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001241 478 SEAGELSVLEIKLKEELDVVRAQKLE 503 (1116)
Q Consensus 478 eER~E~lrLQseLKeEId~~R~Qke~ 503 (1116)
.|..++......+..++...+.....
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 171
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=32.19 E-value=9e+02 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001241 693 SIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 732 (1116)
Q Consensus 693 dIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg 732 (1116)
|||.|-+=.+-|+.+=.++..|++=...-|-++|+.=+|+
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999876664
No 172
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.66 E-value=4.7e+02 Score=25.34 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001241 483 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 544 (1116)
Q Consensus 483 ~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre 544 (1116)
|..|+++.++=||.+ ..|.-|+++||.+......|=+.+-.-|.+|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456888888888876 5677788888876666555555555555555554444444433
No 173
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.37 E-value=1.3e+03 Score=30.21 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHH--hHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001241 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV--QSRALVDKEKDLVERSHLLEEKENKLI 425 (1116)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~--k~~~lkEKEkdl~~Ksk~LKEkEksLk 425 (1116)
++++|.+|..++-+-|--+...-+.+.--|..|-. +++++-+-|-.|..+.+++---+...-
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~ 159 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSG 159 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 45556666655555444444433333333333322 266777778888888777654444433
No 174
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.28 E-value=5e+02 Score=28.44 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 001241 490 LKEELDVVRAQKLELMVETDKL 511 (1116)
Q Consensus 490 LKeEId~~R~Qke~LlkEae~L 511 (1116)
|++++...+.+-+.|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 175
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.27 E-value=1.2e+03 Score=29.62 Aligned_cols=37 Identities=35% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhh
Q 001241 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEM 524 (1116)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~ 524 (1116)
-+|+++++++-.+.+.|++++=+++-+-+.|=++-+.
T Consensus 342 ~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~ 378 (581)
T KOG0995|consen 342 NKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEK 378 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4678899999999999999999998888887665443
No 176
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.43 E-value=7.4e+02 Score=26.96 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001241 560 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1116)
Q Consensus 560 EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 608 (1116)
.-...++.|+.-++.|..-+..|+..|.. =-..|-.+..+|-+|++++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34557889999999999999999999985 3344455666777777654
No 177
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=30.23 E-value=5.6e+02 Score=26.44 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=47.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001241 641 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 720 (1116)
Q Consensus 641 k~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~ 720 (1116)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666777888889999999999999888654433 33444455555555555555666666
Q ss_pred HHHHhhhhh
Q 001241 721 ESERLKKLE 729 (1116)
Q Consensus 721 ~vEklK~ck 729 (1116)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666665554
No 178
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.10 E-value=4.2e+02 Score=30.29 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=65.3
Q ss_pred hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q 001241 414 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEIK 489 (1116)
Q Consensus 414 sk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER----~E~lrLQse 489 (1116)
--.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+.++..+...+.+|..+++=| +||-.|+.+
T Consensus 157 ~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred CcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334555666666655555 4455555666777777777777778888888888888999988877 789999999
Q ss_pred HHHHHHHHHHHH---HHhHHhhHHH
Q 001241 490 LKEELDVVRAQK---LELMVETDKL 511 (1116)
Q Consensus 490 LKeEId~~R~Qk---e~LlkEae~L 511 (1116)
|++--+.|=..- ..|..+.|+.
T Consensus 234 L~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999877664432 3444444443
No 179
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=29.68 E-value=4.6e+02 Score=24.31 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHh
Q 001241 591 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 628 (1116)
Q Consensus 591 s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~ 628 (1116)
..+...+...+..|+..++-...+....|......++.
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 180
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=29.66 E-value=18 Score=44.83 Aligned_cols=52 Identities=33% Similarity=0.518 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcch
Q 001241 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYH 187 (1116)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~ 187 (1116)
..+++-+.+||.++.+.-..| .+|.+|=+.+ ..+-.+-.-|+-+.+++.+|.
T Consensus 270 e~le~ei~~L~q~~~eL~~~A----~~a~~LrDEl----D~lR~~a~r~~klE~~ve~YK 321 (713)
T PF05622_consen 270 EELEKEIDELRQENEELQAEA----REARALRDEL----DELREKADRADKLENEVEKYK 321 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666533222 2344443322 223233333445566666663
No 181
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.64 E-value=1.3e+02 Score=29.69 Aligned_cols=68 Identities=29% Similarity=0.266 Sum_probs=46.5
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001241 119 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1116)
Q Consensus 119 ALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ 189 (1116)
.|.-|+.=...+|.....|-.|.-+. +.+=|.+||.||+.+......++.|...++..+.++......
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566777777887777763 345579999999988887777777776666666655544333
No 182
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=29.15 E-value=1.4e+03 Score=29.71 Aligned_cols=118 Identities=21% Similarity=0.146 Sum_probs=64.2
Q ss_pred HhhhhhHHHHHHHHHhHHH---HhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhh---------hhhhhhhH-HHHHhhh
Q 001241 327 LASKESNEIQKIIANHESA---LRVKQSEFEAELAIKYKLAEDEIEKKRRAWELR---------DLDLGQRE-ESLLERE 393 (1116)
Q Consensus 327 L~aRE~~EIQKLldeh~a~---L~~KK~EFElElE~krKs~eeEle~K~~~~E~r---------Evel~h~E-ekl~kRE 393 (1116)
...-.+.+||+++.+|++. +.+..+.||--=++..+.+ ..+..+ |.+-.|.. ..+.+.-
T Consensus 434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~--------~el~ekdd~nfklm~e~~~~~q~~k~L~~ek 505 (698)
T KOG0978|consen 434 QVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLL--------QELREKDDKNFKLMSERIKANQKHKLLREEK 505 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999843 3344455554322222222 222222 22222222 3344445
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001241 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDL 452 (1116)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dl 452 (1116)
+.|+.+.-.++....-+..++..|.+++..+....-.+..+..++..-.+...+.-.++
T Consensus 506 ~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~ 564 (698)
T KOG0978|consen 506 SKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEA 564 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777666666555555544444443333333
No 183
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=28.07 E-value=6.9e+02 Score=28.49 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=17.3
Q ss_pred HhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001241 258 LSKLQELSRKEKELEASRANVEEKFKALNE 287 (1116)
Q Consensus 258 ~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1116)
+.....+..++++++-++...+.....+++
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666655555443
No 184
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=26.73 E-value=6.4e+02 Score=31.46 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=70.9
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001241 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1116)
Q Consensus 193 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1116)
...|.++||+.++ ..|....+-.-..+..-.--......-.+-...||.-.........+.+.+-.+.+.+++.+|+
T Consensus 403 ~~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 403 ESPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred cCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888885533 3444444443333333333333344444455555555555566666778888889999999999
Q ss_pred HHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHH
Q 001241 273 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310 (1116)
Q Consensus 273 e~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~ 310 (1116)
..+..-+.-...+-+--..++.+|+ ...++++.++
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~---~Q~eeI~~LK 514 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLA---KQREEIQTLK 514 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9999999998888887777766554 3444555544
No 185
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=26.51 E-value=1.2e+03 Score=30.62 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001241 514 EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593 (1116)
Q Consensus 514 eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~ 593 (1116)
|..--.+.-|+|--|.++|-|..+...+|..+|.+.++.=...|+. .+.+|.-+...++++=++-+.+|++=+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q--- 514 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQ--- 514 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3333445556677777777777777777777777776654444443 345566666778888888888887544
Q ss_pred HHHHHHHHHHhhhhhHhhhhhhH
Q 001241 594 FTKIQQERADFLLGIEMQKRDLE 616 (1116)
Q Consensus 594 ~eKiq~Erad~l~d~EmqkreLE 616 (1116)
|.-...|...++++|.++-|+-|
T Consensus 515 ~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 515 FKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred hhHHHHHhhhhHhhhHHHHHHHH
Confidence 33345677777777777766654
No 186
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.79 E-value=83 Score=33.48 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=3.0
Q ss_pred HHHHHHHHHHhHHhhHHHHH
Q 001241 494 LDVVRAQKLELMVETDKLQL 513 (1116)
Q Consensus 494 Id~~R~Qke~LlkEae~Lk~ 513 (1116)
-+.+|..-+-|..|+-|||+
T Consensus 26 KE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 187
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=25.64 E-value=1.2e+03 Score=27.70 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=30.7
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHH
Q 001241 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181 (1116)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~A 181 (1116)
|..-+..-++=+...|.+|.+.|.++.-+ ..+. ......=+.+++.+...++..+.++++.+.
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~--~~~~-~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~ 228 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGI--LPDQ-EGDYYSEISEAQEELEAARLELNEAIAQRD 228 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccc--Cccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555667788888888777543 2211 112222234444444444444444444443
No 188
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=25.39 E-value=9.7e+02 Score=26.65 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001241 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1116)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1116)
.|..+++.+|+ +|..|......+...|+.|
T Consensus 135 ~l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 135 SLRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred hHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 35555665554 3455555555666677665
No 189
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=25.35 E-value=1.3e+03 Score=28.24 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=76.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh----HHHHHHhcchhHHhhhhHHHhhhhhHHH--
Q 001241 132 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----SLQAEANRYHRSAERKLQEVVAREDDLS-- 205 (1116)
Q Consensus 132 KAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe----ak~AEa~Rk~s~aeRKL~eVEaRE~~Lr-- 205 (1116)
..|+.||.+.|-+|.++.+-.++-...|.++-.|...+=. .++. |-.|=++.-+..+......+-++=|+|+
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888877777777777777777655432 1111 1112111122222222222222222222
Q ss_pred -----------------HHHhHhhhhhhhHHHHHHHHHhchH----HHHHHHHHHHHHHHHHhhhhhhhhHhhHh
Q 001241 206 -----------------RRIASFKADCEEKEREIIRERQSLS----DRKKILQQEHERLLDAQTLLNEREDHILS 259 (1116)
Q Consensus 206 -----------------RerlSf~~E~ea~E~~~~~qRe~L~----eweKkLqe~eeRL~e~q~~LNqREe~~~e 259 (1116)
++.-+...|..+..+++.+..+.+. -|.|.-...=+.+|+.|..||--|+-+..
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D 307 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD 307 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555667777777777666665 48888777788999999999988887654
No 190
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.30 E-value=9.5e+02 Score=28.44 Aligned_cols=135 Identities=15% Similarity=0.241 Sum_probs=79.1
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhh
Q 001241 333 NEIQKIIANHESALRVKQSEFEAELA---IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD 409 (1116)
Q Consensus 333 ~EIQKLldeh~a~L~~KK~EFElElE---~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd 409 (1116)
.|+.+++-.-++...+.-.+-=.=++ +-++++..-+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=+.
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444444444444444333 445667777777777888888888888899999999999999888776555
Q ss_pred HHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 001241 410 LVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK--KKQVNCAK 470 (1116)
Q Consensus 410 l~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q--~~qi~ee~ 470 (1116)
...+++.++++=+. .-..+......|-.=.+++...|.+++.=-+++.+. +-+|.++.
T Consensus 278 ~~~~ls~~~~~y~~---~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 278 AQDELSEVQEKYKQ---ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 55555555544433 333343334444444455555555555444444332 23444443
No 191
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=25.20 E-value=1.3e+03 Score=28.20 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=45.9
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001241 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFM 583 (1116)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~ 583 (1116)
+..-...+++.+.++-..-+.+-..+.++++++..+..--. ..+.|..+...++..|..--..|+..|...+
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~--------~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a 377 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE--------SLEALEEEVDKLEEELDKAAVALSLIRRKAA 377 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555666666666666665543222 4455666777777777777777777777776
Q ss_pred Hhhh
Q 001241 584 NKMV 587 (1116)
Q Consensus 584 ~kMe 587 (1116)
....
T Consensus 378 ~~l~ 381 (563)
T TIGR00634 378 ERLA 381 (563)
T ss_pred HHHH
Confidence 5554
No 192
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.17 E-value=1.6e+03 Score=29.18 Aligned_cols=61 Identities=28% Similarity=0.491 Sum_probs=30.6
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001241 506 VETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (1116)
Q Consensus 506 kEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEs 574 (1116)
.|-|-||-+..+++.|-+.|--.-++ +..-|+--++.+-.=-+.|+.|.+ -+..++++|..
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee-------~~rLk~iae~qleEALesl~~ERe-qk~~LrkEL~~ 181 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEE-------AARLKEIAEKQLEEALESLKSERE-QKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45555555555555555555443333 333333334444444455665554 24556666666
No 193
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.66 E-value=1e+03 Score=27.14 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=33.3
Q ss_pred HhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001241 258 LSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1116)
Q Consensus 258 ~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~ 328 (1116)
++..+.|.+...+++.+...+..+...+.+--.=+..+-+....-|.++-..++.|+.-+..+..+.+++.
T Consensus 47 ~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 47 VEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555554444433332222222222223333344555556666666666665555544
No 194
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=24.44 E-value=1.1e+03 Score=27.19 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001241 446 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 525 (1116)
Q Consensus 446 ~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 525 (1116)
..-..+++..++.-+++.+-+.+..+.-..+-.-.++|.|--++=+-+-...+.+...-+.|.--+|+|-.+..-|=+.+
T Consensus 78 ~~~q~~~e~~rv~~EE~Rkt~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~ 157 (276)
T PF12037_consen 78 AQAQAEIERQRVEAEERRKTLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQIL 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888888888888777888777666555555555556666667777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHH
Q 001241 526 DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQE 600 (1116)
Q Consensus 526 DEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~E 600 (1116)
-.+|..+..|++- +|+ ++..++.-| -.-+....|+.+.| -++....++..+|.-|.+-|+.=
T Consensus 158 ~~r~~t~~~eaeL---~~e-------~~~~k~~AE-a~gra~~eReN~Di--~l~~l~~ka~e~R~t~lesI~t~ 219 (276)
T PF12037_consen 158 AQRRQTEEEEAEL---RRE-------TERAKAEAE-AEGRAKEERENEDI--NLEQLRLKAEEERETVLESINTT 219 (276)
T ss_pred HHHHHhHHHHHHH---HHH-------HHHHHHHHH-HHHHHHHHHHhHhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555444431 111 111111111 11233333333333 34556777777888877776643
No 195
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.34 E-value=5.2e+02 Score=28.33 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001241 241 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1116)
Q Consensus 241 eRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl 292 (1116)
++..+.+..+++++..+++-.....++..+|+.++.+++.....+...++++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666777777777777777777777766655555555544
No 196
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.34 E-value=5e+02 Score=32.32 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 001241 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDK 472 (1116)
Q Consensus 444 el~~lK~dlEK~ra~~e~q~~qi~ee~E~ 472 (1116)
+|...+.++.+++.++.+.+.+|...+..
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455544444444444444333
No 197
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.06 E-value=4.3e+02 Score=27.66 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001241 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1116)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 522 (1116)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777778888899999988888875
No 198
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=24.05 E-value=1.3e+03 Score=27.50 Aligned_cols=155 Identities=16% Similarity=0.246 Sum_probs=109.5
Q ss_pred hHHHHHHHHHhHHHHhhhhhhHHHH---HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhh
Q 001241 332 SNEIQKIIANHESALRVKQSEFEAE---LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEK 408 (1116)
Q Consensus 332 ~~EIQKLldeh~a~L~~KK~EFElE---lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEk 408 (1116)
+-|+.+++---++.|.+--.+.-+- |.+.++.++.-..+--.-+.+-=.||+.-=+|++-||.-|+-++.-|-.+=+
T Consensus 204 ~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr 283 (384)
T KOG0972|consen 204 KLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFR 283 (384)
T ss_pred HHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766666654 4555666666666666667777788888889999999999999999999999
Q ss_pred hHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhhhhhhhhhhh-----
Q 001241 409 DLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE--KKKQVNCAKDKLEAMKSEAG----- 481 (1116)
Q Consensus 409 dl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~--q~~qi~ee~E~LkiteeER~----- 481 (1116)
.+..-+..++++-+.+.- -.+.....|..=-++++.+|.++|.-.+...+ =..+|.++.-+|+ +|+.
T Consensus 284 ~a~~~lse~~e~y~q~~~---gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk---~et~~mnv~ 357 (384)
T KOG0972|consen 284 RATDTLSELREKYKQASV---GVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK---EETQTMNVQ 357 (384)
T ss_pred HHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH---HHHHhhhhh
Confidence 999999999988776542 33444445555556666777777665555443 2456666655553 4443
Q ss_pred ----hHHHHHHHHHH
Q 001241 482 ----ELSVLEIKLKE 492 (1116)
Q Consensus 482 ----E~lrLQseLKe 492 (1116)
+|..||+.|+.
T Consensus 358 igv~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 358 IGVFEHSILQTYLRD 372 (384)
T ss_pred eehhhHHHHHHHHHH
Confidence 67788888876
No 199
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.85 E-value=1.5e+03 Score=28.32 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=31.6
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001241 420 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1116)
Q Consensus 420 kEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e 460 (1116)
-+++|+...+.|..-+++|+.-+-+-..|.+++.|+++..-
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv 428 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYV 428 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 36677777777777788888888888888888888887643
No 200
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.83 E-value=6.6e+02 Score=24.17 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001241 484 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 563 (1116)
Q Consensus 484 lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~ 563 (1116)
-.|+.+.++-||.+- .|.-|+++|| ||...|+.|.-.....|++|++ |-+.||+|-.+
T Consensus 7 ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~~----eneqlk~e~~~ 64 (79)
T COG3074 7 EKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALER----ENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 467889999999874 4555666554 6777788888888888888764 67778888777
Q ss_pred HHHHHH
Q 001241 564 MRDQHK 569 (1116)
Q Consensus 564 ~r~~~k 569 (1116)
-++.+.
T Consensus 65 WQerlr 70 (79)
T COG3074 65 WQERLR 70 (79)
T ss_pred HHHHHH
Confidence 666554
No 201
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.65 E-value=1.2e+03 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001241 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475 (1116)
Q Consensus 441 eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~Lki 475 (1116)
|-+++..++..|.+....++....++.+-++.|..
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~ 236 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQE 236 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 202
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=23.21 E-value=1.9e+03 Score=29.38 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=25.6
Q ss_pred HhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 001241 413 RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 471 (1116)
Q Consensus 413 Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E 471 (1116)
+...+|++=-.|...--.|-.+-.+..+..+.-+....++++....+.++..++.-+..
T Consensus 425 ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 425 RYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG 483 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444443333
No 203
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=23.17 E-value=1.8e+03 Score=28.99 Aligned_cols=165 Identities=17% Similarity=0.201 Sum_probs=96.3
Q ss_pred hhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhh--------------hhhHHHHHHhHHHHH
Q 001241 69 LLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKT--------------LGVEKECIASLEKAV 134 (1116)
Q Consensus 69 LLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKA--------------LgvEKqCVadLEKAL 134 (1116)
-|+-.+..|.-+++++..+++-. +-++ ..|..+.-.-..+++. ......|...|+.=|
T Consensus 527 DLLsgkadLE~fieE~s~tLdwI---ls~~-----~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eel 598 (769)
T PF05911_consen 527 DLLSGKADLERFIEEFSLTLDWI---LSNC-----FSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEEL 598 (769)
T ss_pred HHhcchhHHHHHHHHHHHHHHHH---HHcc-----chHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHH
Confidence 35666777777888888777744 2222 2222211111111111 123344444555555
Q ss_pred HHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhh-------hHHHhhhhhHHHHH
Q 001241 135 HEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK-------LQEVVAREDDLSRR 207 (1116)
Q Consensus 135 ~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRK-------L~eVEaRE~~LrRe 207 (1116)
..|..+- -.-+..|+.+..-+....-++.++|.+|....+.++-++-..+.++.- +..++.|=..+.-+
T Consensus 599 E~le~eK----~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 599 EKLESEK----EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5555443 334556677777777777777777777777777777666666666553 34445565556666
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 001241 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLD 245 (1116)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e 245 (1116)
......-..+++.+|...|..-.|-.-++++.++.|.-
T Consensus 675 ~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 675 AEELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 66666667777777777777766666666666555543
No 204
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.99 E-value=5e+02 Score=32.28 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=50.7
Q ss_pred hhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 001241 416 LLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELD 495 (1116)
Q Consensus 416 ~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId 495 (1116)
..++-++.++..+.........|- .++++..+|..++++...-=+--..|.+.+ .++-.|+.+.+...+
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~----------~e~d~lk~e~~~~~~ 233 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIK----------EEFDKLKKEGKADKQ 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 344455555555555555555555 466777777777666552101111121222 244455566666667
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHH
Q 001241 496 VVRAQKLELMVETDKLQLEKAKF 518 (1116)
Q Consensus 496 ~~R~Qke~LlkEae~Lk~eKekF 518 (1116)
.++.=+..|..+.+.++++-..+
T Consensus 234 ~i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 234 KIKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777766666666655544
No 205
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=22.32 E-value=1.1e+03 Score=26.31 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhh-hhhhhhHH
Q 001241 77 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVA-ADSKFAEA 155 (1116)
Q Consensus 77 wtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~t-sesKLaEA 155 (1116)
|.-|.++|++||..-+.+. +|||. .|+.--+.||+-|..||.--.+...+ +.+.--.|
T Consensus 1 Yvekv~~LQ~AL~~LQaa~--------------ekRE~-------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~ 59 (205)
T PF12240_consen 1 YVEKVERLQQALAQLQAAC--------------EKREQ-------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNA 59 (205)
T ss_pred ChhHHHHHHHHHHHHHHHH--------------HHHHH-------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcH
Confidence 3567899999998876543 56664 46666788999999999876664421 22221335
Q ss_pred HHHHHHHhhhhHHHHHhhhhhhHHHHHHhcch-hHHhhhhHHHhhhh-hHHHHHH-hHhhhhhhhHHHHHHHHHhchHHH
Q 001241 156 RCMVENAQKKFAEAEAKLHAAESLQAEANRYH-RSAERKLQEVVARE-DDLSRRI-ASFKADCEEKEREIIRERQSLSDR 232 (1116)
Q Consensus 156 ~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~-s~aeRKL~eVEaRE-~~LrRer-lSf~~E~ea~E~~~~~qRe~L~ew 232 (1116)
..|.. .+-|-|.++.+.++-.+.-..++ -+..+.==-++|=. ..-.|.. +.-.+.++.+...| +.-+++---
T Consensus 60 ~~L~~----~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~-r~~eel~~a 134 (205)
T PF12240_consen 60 SNLKE----LLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL-REEEELHMA 134 (205)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc-cchHHHHHh
Confidence 55544 45556788888877766655543 11111111111111 1122333 33445666664444 444666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHH
Q 001241 233 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKE 270 (1116)
Q Consensus 233 eKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEke 270 (1116)
.++.++++.||-..- -.|.|.|..++.++..
T Consensus 135 ~~K~qemE~RIK~Lh-------aqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 135 NRKCQEMENRIKALH-------AQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 777888888865554 3456666666666553
No 206
>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]
Probab=21.98 E-value=1.1e+02 Score=33.68 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=35.9
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCCcccccCCCCCCCCCCCccc-cc-----cccCCccccc
Q 001241 798 ASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASL-TI-----NSRKRQPVRY 854 (1116)
Q Consensus 798 ~SP~s~g~~SWlrKCTskIFk~SP~Kk~~~~~e~~~~s~~~~~~~-~~-----~~~k~q~iry 854 (1116)
.+|.+.+|+-=+-+||.++|.-+-.-++++ |+++...+ +. -.+-+||.++
T Consensus 55 ~~~~~~~p~t~i~~~~p~~~att~k~~aer-------sd~~v~~l~lhkRqffHS~t~qPl~l 110 (221)
T KOG2350|consen 55 NGPVKRTPITHILVCRPKRTATTMKEFAER-------SDGEVEQLRLHKRQFFHSDTCQPLRL 110 (221)
T ss_pred CCCCCCCcchhhhccchHhhhhcccccccc-------cccceeeeccccceeeeccccCCCCH
Confidence 567777888889999999999887665555 45555555 22 4567788876
No 207
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.89 E-value=8.5e+02 Score=28.82 Aligned_cols=99 Identities=14% Similarity=0.339 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHH
Q 001241 152 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 231 (1116)
Q Consensus 152 LaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~e 231 (1116)
|..++.+..+|..-+.++-..|- |-+.++.+-|..+.+||.-|-.+.-...
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~----------kl~~~i~~~lekI~sREk~iN~qle~l~------------------- 272 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLD----------KLQQDISKTLEKIESREKYINNQLEPLI------------------- 272 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHHHH-------------------
Confidence 66777777777777766655543 3566777777778877766544332222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHH
Q 001241 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 281 (1116)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~ 281 (1116)
..+...+.+|.+.+.-.++....+.++.+.|...-.+||..|..++.-
T Consensus 273 --~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 273 --QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 224455666667777777777778888888888888888777766544
No 208
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=21.85 E-value=5.2e+02 Score=28.71 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=45.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001241 643 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQ 719 (1116)
Q Consensus 643 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl 719 (1116)
+++..+-+....+.++|.++..|.+.|+.||+-+..+|+.......+--. -..-+|.+|..+.....
T Consensus 38 ~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~----------~~e~~r~~fekekqq~~ 104 (228)
T PRK06800 38 KDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMK----------EIEAARQQFQKEQQETA 104 (228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 34444445566778899999999999999999998888776654443333 33445666666665543
No 209
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.25 E-value=3.1e+02 Score=25.40 Aligned_cols=53 Identities=9% Similarity=0.275 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001241 124 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1116)
Q Consensus 124 KqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 176 (1116)
++++..+.+.+..|+.+...+.--...-+..++.+.++++.|...+..=..++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67788999999999999999998888899999999999888887776655444
No 210
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=21.15 E-value=2.9e+02 Score=36.91 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=29.2
Q ss_pred ccccccccchhhhhhccc-----------cccccchhhhhhccCCCCCCCchhhhhhhhhhhh
Q 001241 875 TVDLESENNQNAAQKCKQ-----------SVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRK 926 (1116)
Q Consensus 875 ~~~les~~~~~~n~~~~~-----------~~~~~~~~agrkrr~~~~~~D~s~~~~q~nk~R~ 926 (1116)
.|++|. ++||++-+ .|++-..-+||-|||.. -.|++-..-+|.||+
T Consensus 1425 ~y~~e~----~~~g~i~~~~k~~~~spek~v~~~~~~~~~s~~g~~--~~p~~~ke~~~~~~~ 1481 (1529)
T KOG0413|consen 1425 NYDDEE----DADGKIWKKPKIVNKSPEKEVNSANVTLRRSRRGQS--TEPPVVKENSNRKRK 1481 (1529)
T ss_pred cccchh----hcCCceeeccccccCCchhhcccceeeecccccCCC--CCCcchhhhcccccc
Confidence 677775 46666532 45666667888888853 345555556677666
No 211
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.58 E-value=1.6e+03 Score=27.48 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=28.6
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001241 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279 (1116)
Q Consensus 222 ~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie 279 (1116)
+..-+.++-.-++++.+........+..|++=+..++..+..+...+.+|...++.|+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3333444444444555555555555555555555555555555555555554444443
No 212
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.21 E-value=1.8e+03 Score=27.95 Aligned_cols=311 Identities=16% Similarity=0.145 Sum_probs=151.5
Q ss_pred HHHHhHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001241 125 ECIASLEKAVHEIRAESA--ETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (1116)
Q Consensus 125 qCVadLEKAL~emr~E~A--eiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~ 202 (1116)
-|..||-..|+.+....+ ...|+.-.|...+-... ...+-.....-+...++.-.-..++...|.++.++-.
T Consensus 272 ~s~~dl~~~l~~~~~~~~~k~s~f~~~ek~~~~~~~~------~~~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~ 345 (594)
T PF05667_consen 272 SSSDDLADVLHKFSGEAWDKGSRFTHSEKPQEAAPAA------AVVPPKEKETEEDEQEEQEQELEELQEQLDELESQIE 345 (594)
T ss_pred cchhHHHHHHHhccccccccccccccccchhhhhhcc------ccCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888776655 12244444411111100 0001111122222333444445566666777777777
Q ss_pred HHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH---HHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001241 203 DLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE---HERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279 (1116)
Q Consensus 203 ~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~---eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie 279 (1116)
.+..++-.+.........+....+....+.++.+.-. -+.|.++...+.+=+..+......+..+....|..+.-+.
T Consensus 346 ~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~ 425 (594)
T PF05667_consen 346 ELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLI 425 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7777777777777666666666666666555544322 2334445555555555555666666666666666666666
Q ss_pred HHHHHHhhhhh----hhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHH
Q 001241 280 EKFKALNEEKS----NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEA 355 (1116)
Q Consensus 280 ~~~~~Lk~ke~----dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFEl 355 (1116)
.+...|+...+ +...++..+-.=-..+......+..||.....|...+...-+. + .+.+--.+. +
T Consensus 426 ~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~------~Rs~Yt~RI----l 494 (594)
T PF05667_consen 426 EEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-V------NRSAYTRRI----L 494 (594)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-C------CHHHHHHHH----H
Confidence 66666665433 3333444444434444555555555555555555444433321 0 000000000 1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHH
Q 001241 356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKK 435 (1116)
Q Consensus 356 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek 435 (1116)
|+=.--+--.+||..=..+.-.-..+|+....+|.-=.-..|...=+=+. |+...+..=|-|
T Consensus 495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAK--------------kDe~~rkaYK~L---- 556 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAK--------------KDEAARKAYKLL---- 556 (594)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh--------------cCHHHHHHHHHH----
Confidence 11111111233444444444444455565555555444444433322111 333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 001241 436 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAK 470 (1116)
Q Consensus 436 ~~L~~eKEel~~lK~dlEK~ra~~e~q~~qi~ee~ 470 (1116)
..|-..=..|-..-.+...+.-++.+=..||+.+.
T Consensus 557 a~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~ 591 (594)
T PF05667_consen 557 ASLHENCSQLIETVEETGTISREIRDLEEQIDTES 591 (594)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 44555555566666666666666666556665554
Done!