Query 001242
Match_columns 1116
No_of_seqs 618 out of 2491
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ylm_A Ubiquitin carboxyl-term 100.0 1E-105 5E-110 962.0 52.3 513 558-1093 4-530 (530)
2 2f1z_A Ubiquitin carboxyl-term 100.0 6.7E-93 2.3E-97 862.9 41.1 493 48-560 26-522 (522)
3 1nb8_A Ubiquitin carboxyl-term 100.0 1.8E-68 6.3E-73 617.4 31.5 353 191-560 1-353 (353)
4 2y6e_A Ubiquitin carboxyl-term 100.0 6.5E-57 2.2E-61 523.9 29.4 299 191-523 3-360 (367)
5 3nhe_A Ubiquitin carboxyl-term 100.0 1.3E-56 4.5E-61 516.8 25.8 301 189-524 2-345 (348)
6 2gfo_A Ubiquitin carboxyl-term 100.0 1.4E-55 4.7E-60 517.3 27.9 297 192-522 58-396 (396)
7 3i3t_A Ubiquitin carboxyl-term 100.0 7.6E-56 2.6E-60 511.8 22.0 293 194-523 1-352 (355)
8 2ayn_A Ubiquitin carboxyl-term 100.0 5E-55 1.7E-59 514.6 22.8 302 193-523 11-395 (404)
9 1vjv_A Ubiquitin carboxyl-term 100.0 3.4E-54 1.2E-58 509.3 29.1 299 191-522 19-414 (415)
10 3mhs_A Ubiquitin carboxyl-term 100.0 5.7E-52 1.9E-56 498.9 26.7 299 191-522 136-474 (476)
11 3ihp_A Ubiquitin carboxyl-term 100.0 2.2E-49 7.5E-54 500.6 25.8 223 192-421 340-622 (854)
12 2vhf_A Ubiquitin carboxyl-term 99.9 2.7E-25 9.1E-30 247.7 6.9 217 196-472 9-309 (374)
13 2foj_A Ubiquitin carboxyl-term 99.9 1.1E-23 3.6E-28 214.0 12.9 133 48-182 14-150 (155)
14 2kvr_A Ubiquitin carboxyl-term 99.9 9.3E-24 3.2E-28 204.9 8.4 128 535-671 1-130 (130)
15 3ivv_A Speckle-type POZ protei 99.9 5.1E-23 1.8E-27 206.6 10.8 130 48-182 6-145 (145)
16 4gjh_A TNF receptor-associated 99.8 3.8E-22 1.3E-26 207.1 4.9 133 49-181 20-174 (178)
17 4ghu_A TNF receptor-associated 99.8 2.1E-21 7.1E-26 204.3 4.3 134 49-184 36-191 (198)
18 1ca9_A TRAF2, protein (TNF rec 99.8 5.3E-21 1.8E-25 201.1 4.1 130 50-181 40-191 (192)
19 1lb6_A TNF receptor-associated 99.8 2.4E-20 8.4E-25 190.2 6.7 130 51-182 3-158 (160)
20 1d00_A Tumor necrosis factor r 99.8 2E-20 6.9E-25 192.4 5.6 130 50-181 16-167 (168)
21 2gkw_A TNF receptor-associated 99.8 4E-20 1.4E-24 194.1 3.2 129 51-181 38-188 (192)
22 1flk_A TNF receptor associated 99.8 2.2E-19 7.4E-24 193.5 4.9 131 50-182 73-225 (228)
23 3hqi_A Speckle-type POZ protei 99.8 7.8E-19 2.7E-23 198.9 9.5 127 51-182 5-141 (312)
24 4gwm_A Meprin A subunit beta; 98.7 1.2E-08 4E-13 122.7 6.4 135 40-179 393-565 (592)
25 2ylm_A Ubiquitin carboxyl-term 97.4 0.011 3.8E-07 70.8 23.1 228 593-850 254-489 (530)
26 3mp2_A Non-structural protein 96.2 0.037 1.3E-06 57.2 12.3 190 187-478 4-195 (211)
27 3u30_A Ubiquitin, linear DI-ub 95.9 0.084 2.9E-06 53.4 13.5 133 594-773 33-165 (172)
28 3b08_A Polyubiquitin-C, ubiqui 95.9 0.085 2.9E-06 51.9 13.2 136 594-776 13-148 (152)
29 3rt3_B Ubiquitin-like protein 95.8 0.062 2.1E-06 53.6 11.9 138 594-775 15-152 (159)
30 3u30_A Ubiquitin, linear DI-ub 95.7 0.17 5.7E-06 51.2 15.0 115 901-1046 20-136 (172)
31 3b08_A Polyubiquitin-C, ubiqui 94.7 0.61 2.1E-05 45.6 15.2 117 916-1067 12-130 (152)
32 2fe8_A PP1AB, ORF1AB, replicas 93.5 0.66 2.3E-05 51.0 13.3 83 187-289 93-175 (315)
33 3rt3_B Ubiquitin-like protein 93.4 1.5 5.1E-05 43.4 15.0 119 916-1067 14-135 (159)
34 2io1_B Small ubiquitin-related 88.8 0.88 3E-05 41.1 6.9 75 687-776 5-79 (94)
35 3goe_A DNA repair protein RAD6 88.6 0.86 2.9E-05 39.2 6.1 57 709-773 23-79 (82)
36 2io0_B Small ubiquitin-related 84.5 2.3 8E-05 38.0 7.2 74 688-776 4-77 (91)
37 4a3p_A Ubiquitin carboxyl-term 84.4 1.9 6.6E-05 45.2 7.7 68 593-673 141-209 (217)
38 3kyd_D Small ubiquitin-related 84.2 2.5 8.7E-05 39.5 7.5 71 688-773 39-109 (115)
39 1wm3_A Ubiquitin-like protein 84.0 1.2 4E-05 38.0 4.8 56 709-773 15-70 (72)
40 2k8h_A Small ubiquitin protein 83.6 1.7 5.7E-05 40.5 6.0 76 686-776 23-98 (110)
41 4dbg_A Ranbp-type and C3HC4-ty 83.3 1.2 4E-05 41.1 4.8 36 592-628 37-72 (105)
42 2eke_C Ubiquitin-like protein 83.2 3.9 0.00013 37.7 8.3 75 685-775 27-101 (106)
43 2d07_B Ubiquitin-like protein 82.3 2.5 8.4E-05 38.0 6.5 73 687-774 15-87 (93)
44 3plu_A Ubiquitin-like modifier 82.2 1.6 5.5E-05 39.2 5.1 34 594-627 34-67 (93)
45 3dbh_I NEDD8; cell cycle, acti 82.0 2.8 9.5E-05 36.7 6.7 73 687-774 10-82 (88)
46 3a4r_A Nfatc2-interacting prot 81.6 1.4 4.7E-05 38.4 4.4 72 688-773 6-77 (79)
47 2kjr_A CG11242; UBL, ubiquitin 81.2 15 0.00053 32.9 11.4 81 686-774 12-93 (95)
48 3v6c_B Ubiquitin; structural g 81.1 3.5 0.00012 36.5 7.1 73 687-774 15-87 (91)
49 1wz0_A Ubiquitin-like protein 80.9 3 0.0001 38.3 6.6 74 687-775 22-95 (104)
50 3plu_A Ubiquitin-like modifier 80.6 2.4 8.2E-05 38.1 5.6 70 688-772 20-89 (93)
51 1wjn_A Tubulin-folding protein 79.6 5.8 0.0002 35.6 8.1 67 710-777 27-93 (97)
52 2uyz_B Small ubiquitin-related 79.5 2 6.7E-05 36.9 4.7 71 690-775 4-74 (79)
53 2kjr_A CG11242; UBL, ubiquitin 79.2 2.3 7.9E-05 38.4 5.2 35 594-628 30-64 (95)
54 3jyu_A Ubiquitin carboxyl-term 78.5 2.8 9.6E-05 44.3 6.4 68 594-674 154-222 (231)
55 1wyw_B Ubiquitin-like protein 78.4 2.5 8.6E-05 38.1 5.2 74 687-775 19-92 (97)
56 3n3k_B Ubiquitin; hydrolase, p 78.4 3 0.0001 36.1 5.7 72 690-776 4-75 (85)
57 4b6w_A Tubulin-specific chaper 78.3 1.6 5.4E-05 38.7 3.7 34 594-627 17-50 (86)
58 4a3p_A Ubiquitin carboxyl-term 78.2 6.3 0.00021 41.2 9.0 67 708-777 142-209 (217)
59 2jxx_A Nfatc2-interacting prot 77.7 4.5 0.00015 36.6 6.6 70 691-773 25-95 (97)
60 4hcn_B Polyubiquitin, ubiquiti 77.0 2.7 9.1E-05 38.0 5.0 75 686-775 19-93 (98)
61 2dzi_A Ubiquitin-like protein 76.8 6.9 0.00024 33.4 7.5 72 688-774 6-77 (81)
62 2kj6_A Tubulin folding cofacto 76.6 2.9 9.8E-05 37.9 5.0 36 593-628 28-63 (97)
63 3mtn_B UBA80, ubcep1, ubiquiti 76.4 4.5 0.00015 34.9 6.2 73 689-776 3-75 (85)
64 2l76_A Nfatc2-interacting prot 76.1 2.1 7.1E-05 38.5 3.8 58 707-773 32-89 (95)
65 4efo_A Serine/threonine-protei 76.0 3.5 0.00012 37.0 5.3 30 1016-1045 23-52 (94)
66 2kj6_A Tubulin folding cofacto 75.5 16 0.00054 33.0 9.6 82 687-775 12-94 (97)
67 3phx_B Ubiquitin-like protein 75.2 5.3 0.00018 34.1 6.2 71 689-774 4-74 (79)
68 3n3k_B Ubiquitin; hydrolase, p 74.9 2.7 9.1E-05 36.5 4.3 33 594-626 16-48 (85)
69 3a9j_A Ubiquitin; protein comp 74.7 3.8 0.00013 34.4 5.1 70 692-776 3-72 (76)
70 3tix_A Ubiquitin-like protein 74.1 5 0.00017 40.8 6.3 76 685-776 53-128 (207)
71 2bwf_A Ubiquitin-like protein 74.1 11 0.00038 31.7 8.0 70 690-775 5-74 (77)
72 1ndd_A NEDD8, protein (ubiquit 74.0 3.9 0.00013 34.4 5.0 70 692-776 3-72 (76)
73 3mtn_B UBA80, ubcep1, ubiquiti 73.9 3.3 0.00011 35.8 4.7 33 594-626 16-48 (85)
74 3jyu_A Ubiquitin carboxyl-term 73.7 7.2 0.00025 41.2 8.0 66 709-777 155-221 (231)
75 2uyz_B Small ubiquitin-related 73.6 3.6 0.00012 35.2 4.7 34 593-626 15-48 (79)
76 1v6e_A Cytoskeleton-associated 72.7 2.9 9.9E-05 37.5 4.0 34 594-627 21-54 (95)
77 3phx_B Ubiquitin-like protein 72.5 4.1 0.00014 34.8 4.8 33 594-626 17-49 (79)
78 4fbj_B NEDD8; effector-HOST ta 72.3 4.6 0.00016 35.6 5.2 71 691-776 2-72 (88)
79 2kk8_A Uncharacterized protein 72.0 4.3 0.00015 35.6 4.8 33 594-626 23-55 (84)
80 1uh6_A Ubiquitin-like 5; beta- 72.0 4.8 0.00016 36.7 5.2 33 594-626 41-73 (100)
81 4eew_A Large proline-rich prot 71.8 4.5 0.00016 35.4 5.0 33 594-626 30-62 (88)
82 3a9j_A Ubiquitin; protein comp 71.2 3.8 0.00013 34.4 4.3 33 594-626 13-45 (76)
83 1wh3_A 59 kDa 2'-5'-oligoadeny 71.0 4.9 0.00017 35.0 5.1 33 594-626 20-52 (87)
84 1wx7_A Ubiquilin 3; ubiquitin- 70.8 13 0.00043 34.0 8.0 74 687-776 15-88 (106)
85 2hj8_A Interferon-induced 17 k 70.7 9.5 0.00033 33.4 6.9 72 690-776 5-76 (88)
86 1wh3_A 59 kDa 2'-5'-oligoadeny 70.5 6.6 0.00022 34.2 5.8 73 689-776 7-79 (87)
87 2kk8_A Uncharacterized protein 70.5 4.8 0.00016 35.3 4.8 30 1016-1045 20-49 (84)
88 2hj8_A Interferon-induced 17 k 70.0 5.2 0.00018 35.2 5.0 33 594-626 17-49 (88)
89 1wx8_A Riken cDNA 4931431F19; 69.8 9.9 0.00034 33.8 6.9 74 687-776 15-88 (96)
90 2bwf_A Ubiquitin-like protein 69.7 5.3 0.00018 33.8 4.9 33 594-626 16-48 (77)
91 3dbh_I NEDD8; cell cycle, acti 69.6 4.3 0.00015 35.4 4.4 33 594-626 25-57 (88)
92 1wju_A NEDD8 ultimate buster-1 69.5 4.7 0.00016 36.7 4.6 33 593-625 31-63 (100)
93 1j8c_A Ubiquitin-like protein 69.3 15 0.00052 34.7 8.4 74 688-777 31-104 (125)
94 4dwf_A HLA-B-associated transc 69.3 5.5 0.00019 35.0 5.0 33 594-626 18-50 (90)
95 1ndd_A NEDD8, protein (ubiquit 68.8 4.6 0.00016 33.9 4.3 33 594-626 13-45 (76)
96 3v6c_B Ubiquitin; structural g 68.7 5 0.00017 35.5 4.7 33 594-626 30-62 (91)
97 2faz_A Ubiquitin-like containi 68.6 5.7 0.0002 33.8 4.9 32 595-626 17-49 (78)
98 1yqb_A Ubiquilin 3; structural 68.4 12 0.00042 33.8 7.3 75 686-776 19-93 (100)
99 1oey_A P67-PHOX, neutrophil cy 68.3 5.8 0.0002 34.8 4.7 67 593-670 15-81 (83)
100 4fbj_B NEDD8; effector-HOST ta 68.2 4.3 0.00015 35.7 4.1 33 594-626 13-45 (88)
101 2klc_A Ubiquilin-1; ubiquitin- 68.2 12 0.00042 33.8 7.2 73 688-776 24-96 (101)
102 2dzi_A Ubiquitin-like protein 68.1 5.9 0.0002 33.8 4.9 33 594-626 20-52 (81)
103 1sif_A Ubiquitin; hydrophobic 68.0 6.4 0.00022 34.6 5.1 72 690-776 10-81 (88)
104 1sif_A Ubiquitin; hydrophobic 68.0 4.4 0.00015 35.7 4.1 33 594-626 22-54 (88)
105 2kan_A Uncharacterized protein 68.0 5.7 0.0002 35.6 4.9 33 594-626 27-59 (94)
106 1ttn_A DC-UBP, dendritic cell- 67.5 12 0.0004 34.2 7.0 76 686-776 20-95 (106)
107 2kd0_A LRR repeats and ubiquit 67.1 6.2 0.00021 34.6 4.8 33 594-626 24-56 (85)
108 2ojr_A Ubiquitin; lanthide-bin 67.0 15 0.00052 33.7 7.8 74 688-776 34-107 (111)
109 3m62_B UV excision repair prot 67.0 5.3 0.00018 36.6 4.6 71 691-776 3-73 (106)
110 1t0y_A Tubulin folding cofacto 66.9 6.5 0.00022 37.1 5.2 36 593-628 19-54 (122)
111 3pge_A SUMO-modified prolifera 66.7 9.7 0.00033 39.1 6.8 76 685-776 25-101 (200)
112 3a4r_A Nfatc2-interacting prot 66.7 6.5 0.00022 34.0 4.8 34 593-626 20-53 (79)
113 1wyw_B Ubiquitin-like protein 66.5 6 0.0002 35.6 4.7 33 594-626 34-66 (97)
114 1v5o_A 1700011N24RIK protein; 66.2 5.6 0.00019 36.1 4.5 34 593-626 23-56 (102)
115 1wm3_A Ubiquitin-like protein 65.9 7.4 0.00025 32.9 4.9 35 593-627 13-47 (72)
116 2l7r_A Ubiquitin-like protein 65.9 7.3 0.00025 34.7 5.1 70 689-775 19-88 (93)
117 1wy8_A NP95-like ring finger p 65.7 13 0.00043 32.5 6.7 75 688-776 6-81 (89)
118 3k9o_B Ubiquitin, UBB+1; E2-25 65.6 5.5 0.00019 35.5 4.3 33 594-626 14-46 (96)
119 1qmy_A Protease, leader protea 65.5 2 6.7E-05 41.0 1.2 35 195-229 12-47 (167)
120 2l7r_A Ubiquitin-like protein 65.4 5.3 0.00018 35.7 4.1 33 594-626 30-62 (93)
121 1yqb_A Ubiquilin 3; structural 65.3 7.2 0.00025 35.3 5.0 32 595-626 35-66 (100)
122 3vdz_A Ubiquitin-40S ribosomal 65.1 6.7 0.00023 36.3 4.9 33 594-626 48-80 (111)
123 2faz_A Ubiquitin-like containi 64.9 21 0.00071 30.2 7.7 72 690-775 3-75 (78)
124 4ajy_B Transcription elongatio 64.4 7.8 0.00027 36.3 5.1 32 595-626 15-46 (118)
125 1yx5_B Ubiquitin; proteasome, 64.3 8.5 0.00029 34.5 5.3 71 692-777 3-73 (98)
126 4hcn_B Polyubiquitin, ubiquiti 64.3 5.6 0.00019 35.8 4.1 33 594-626 35-67 (98)
127 4dwf_A HLA-B-associated transc 64.2 10 0.00035 33.2 5.8 74 688-777 4-77 (90)
128 1uh6_A Ubiquitin-like 5; beta- 63.6 8.1 0.00028 35.1 4.9 46 1016-1068 38-83 (100)
129 4b6w_A Tubulin-specific chaper 63.4 13 0.00044 32.7 6.1 62 710-774 19-81 (86)
130 2io0_B Small ubiquitin-related 63.3 9.7 0.00033 33.9 5.4 34 593-626 17-50 (91)
131 1wy8_A NP95-like ring finger p 63.0 8.5 0.00029 33.7 5.0 33 594-626 21-54 (89)
132 3k9o_B Ubiquitin, UBB+1; E2-25 62.8 9.3 0.00032 33.9 5.3 72 690-776 2-73 (96)
133 2io1_B Small ubiquitin-related 62.2 9.6 0.00033 34.2 5.2 34 593-626 19-52 (94)
134 2wyq_A HHR23A, UV excision rep 62.1 18 0.0006 31.2 6.8 73 689-776 5-80 (85)
135 2pjh_A Protein NPL4, nuclear p 61.9 4.7 0.00016 35.0 3.0 63 706-774 14-78 (80)
136 2klc_A Ubiquilin-1; ubiquitin- 61.9 8.5 0.00029 34.9 4.8 33 594-626 37-69 (101)
137 1wx8_A Riken cDNA 4931431F19; 61.5 7.1 0.00024 34.8 4.2 33 594-626 29-61 (96)
138 1v86_A DNA segment, CHR 7, way 61.5 5.5 0.00019 35.7 3.5 31 595-625 30-60 (95)
139 3kyd_D Small ubiquitin-related 61.5 10 0.00035 35.4 5.3 35 594-628 53-87 (115)
140 1wjn_A Tubulin-folding protein 61.5 6.6 0.00022 35.3 4.0 36 593-628 24-59 (97)
141 2d07_B Ubiquitin-like protein 61.0 12 0.0004 33.5 5.5 34 594-627 30-63 (93)
142 2eke_C Ubiquitin-like protein 60.4 11 0.00036 34.8 5.2 35 593-627 42-76 (106)
143 1yx5_B Ubiquitin; proteasome, 60.4 7.8 0.00027 34.7 4.3 33 594-626 13-45 (98)
144 2kdi_A Ubiquitin, vacuolar pro 60.3 9.9 0.00034 35.3 5.1 34 593-626 21-54 (114)
145 2kdi_A Ubiquitin, vacuolar pro 60.2 12 0.0004 34.8 5.6 72 691-777 11-82 (114)
146 2dzm_A FAS-associated factor 1 60.0 8.1 0.00028 35.1 4.3 32 594-625 21-52 (100)
147 1wx7_A Ubiquilin 3; ubiquitin- 59.9 11 0.00036 34.5 5.2 32 595-626 30-61 (106)
148 3vdz_A Ubiquitin-40S ribosomal 59.7 15 0.0005 33.9 6.2 72 689-775 35-106 (111)
149 1t0y_A Tubulin folding cofacto 59.4 36 0.0012 31.9 8.9 82 689-777 6-87 (122)
150 2c5l_C Phosphoinositide-specif 59.2 44 0.0015 31.1 9.1 70 899-969 5-91 (117)
151 2kd0_A LRR repeats and ubiquit 59.1 13 0.00044 32.4 5.4 70 691-775 13-82 (85)
152 1v5o_A 1700011N24RIK protein; 58.7 21 0.00073 32.2 7.0 31 1016-1046 21-51 (102)
153 2kvr_A Ubiquitin carboxyl-term 58.5 13 0.00044 35.5 5.6 34 816-850 58-91 (130)
154 2fnj_B Transcription elongatio 58.4 11 0.00039 35.2 5.1 32 595-626 15-46 (118)
155 2kc2_A Talin-1, F1; FERM, adhe 58.2 23 0.00079 33.6 7.2 69 707-775 23-121 (128)
156 4eew_A Large proline-rich prot 58.0 9.2 0.00031 33.4 4.2 46 1016-1068 27-72 (88)
157 2kzr_A Ubiquitin thioesterase 57.9 9.5 0.00032 33.4 4.3 62 712-777 17-78 (86)
158 2ojr_A Ubiquitin; lanthide-bin 57.7 11 0.00039 34.6 5.0 33 594-626 48-80 (111)
159 1wxv_A BAG-family molecular ch 57.5 11 0.00039 33.2 4.9 32 595-626 20-56 (92)
160 1wgg_A Ubiquitin carboxyl-term 57.3 9 0.00031 34.4 4.1 31 595-625 21-51 (96)
161 1v5t_A 8430435I17RIK protein; 56.8 6.4 0.00022 34.8 3.0 29 597-625 23-51 (90)
162 4a20_A Ubiquitin-like protein 56.5 25 0.00085 31.7 6.9 75 688-775 18-94 (98)
163 3m63_B Ubiquitin domain-contai 55.4 5.7 0.00019 36.1 2.4 31 596-626 42-72 (101)
164 1j8c_A Ubiquitin-like protein 54.8 13 0.00045 35.1 5.0 33 594-626 44-76 (125)
165 1v86_A DNA segment, CHR 7, way 54.6 10 0.00035 33.9 4.0 30 1016-1045 26-55 (95)
166 1wgd_A Homocysteine-responsive 54.1 11 0.00038 33.4 4.2 32 595-626 23-56 (93)
167 1ttn_A DC-UBP, dendritic cell- 54.1 10 0.00036 34.6 4.0 32 595-626 37-68 (106)
168 1uel_A HHR23B, UV excision rep 53.8 41 0.0014 29.7 7.9 58 710-776 15-75 (95)
169 2wyq_A HHR23A, UV excision rep 53.6 15 0.00051 31.6 4.9 33 594-626 18-53 (85)
170 2k8h_A Small ubiquitin protein 53.6 13 0.00045 34.4 4.6 34 593-626 38-71 (110)
171 1we7_A SF3A1 protein; structur 53.3 22 0.00076 32.8 6.3 77 981-1067 12-89 (115)
172 1v6e_A Cytoskeleton-associated 52.8 31 0.0011 30.6 7.0 80 689-776 7-87 (95)
173 4dbg_A Ranbp-type and C3HC4-ty 52.8 31 0.0011 31.5 6.9 32 1016-1047 36-67 (105)
174 2lxa_A Ubiquitin-like protein 52.3 8.2 0.00028 34.1 2.9 27 600-626 22-49 (87)
175 1we7_A SF3A1 protein; structur 52.2 14 0.00047 34.3 4.6 33 594-626 48-80 (115)
176 2daf_A FLJ35834 protein; hypot 52.2 15 0.00051 34.3 4.7 62 593-673 28-89 (118)
177 2kan_A Uncharacterized protein 51.4 33 0.0011 30.4 6.9 74 687-776 13-87 (94)
178 1v5t_A 8430435I17RIK protein; 51.4 9.2 0.00032 33.8 3.1 29 1016-1044 16-45 (90)
179 1wz0_A Ubiquitin-like protein 51.1 13 0.00046 33.9 4.2 34 593-626 36-69 (104)
180 3m62_B UV excision repair prot 50.5 8.8 0.0003 35.1 2.9 32 595-626 15-46 (106)
181 1we6_A Splicing factor, putati 50.4 40 0.0014 30.8 7.5 58 710-776 45-103 (111)
182 1we6_A Splicing factor, putati 50.0 15 0.00051 33.8 4.4 33 594-626 43-76 (111)
183 2dzm_A FAS-associated factor 1 49.9 13 0.00046 33.7 4.0 30 1016-1045 18-47 (100)
184 1wf9_A NPL4 family protein; be 49.6 21 0.00071 32.6 5.3 79 690-776 8-94 (107)
185 3m63_B Ubiquitin domain-contai 49.3 12 0.00041 33.9 3.6 69 690-774 29-97 (101)
186 1wgg_A Ubiquitin carboxyl-term 48.3 14 0.00049 33.0 3.9 44 1016-1066 16-60 (96)
187 1wf9_A NPL4 family protein; be 46.8 13 0.00044 34.1 3.4 32 595-626 20-52 (107)
188 1uel_A HHR23B, UV excision rep 46.7 19 0.00064 32.0 4.4 33 594-626 13-48 (95)
189 3pge_A SUMO-modified prolifera 46.6 19 0.00064 37.0 4.9 38 593-630 40-77 (200)
190 2l76_A Nfatc2-interacting prot 46.4 16 0.00055 32.7 3.8 36 593-628 32-67 (95)
191 3uf8_A Ubiquitin-like protein 45.8 32 0.0011 35.5 6.7 73 686-774 18-90 (209)
192 2dzj_A Synaptic glycoprotein S 45.6 37 0.0013 29.8 6.1 73 690-773 11-85 (88)
193 1wxv_A BAG-family molecular ch 44.2 99 0.0034 26.9 8.9 74 688-777 6-85 (92)
194 3q3f_A Ribonuclease/ubiquitin 43.3 29 0.00098 35.3 5.7 72 690-776 106-177 (189)
195 2bps_A YUKD protein; ubiquitin 43.0 35 0.0012 29.7 5.3 58 710-772 21-79 (81)
196 2dzj_A Synaptic glycoprotein S 42.9 20 0.00069 31.6 3.9 31 595-625 26-58 (88)
197 3l0w_B Monoubiquitinated proli 42.8 20 0.0007 35.7 4.4 33 594-626 13-45 (169)
198 4a20_A Ubiquitin-like protein 42.6 19 0.00064 32.6 3.7 30 597-626 37-67 (98)
199 1wxa_A Afadin, AF-6 protein; R 42.4 42 0.0015 31.2 6.2 36 918-953 27-63 (116)
200 1wju_A NEDD8 ultimate buster-1 42.0 59 0.002 29.4 6.9 72 691-775 15-90 (100)
201 1oey_A P67-PHOX, neutrophil cy 40.8 27 0.00092 30.5 4.2 28 1019-1046 16-43 (83)
202 4gdk_A Ubiquitin-like protein 40.5 29 0.00099 30.9 4.5 33 709-741 23-55 (91)
203 3b1l_X E3 ubiquitin-protein li 46.6 5.9 0.0002 33.5 0.0 32 595-626 14-45 (76)
204 2jxx_A Nfatc2-interacting prot 39.1 31 0.0011 31.1 4.6 34 593-626 38-71 (97)
205 3l0w_B Monoubiquitinated proli 39.0 41 0.0014 33.4 6.0 71 692-777 3-73 (169)
206 3b1l_X E3 ubiquitin-protein li 45.1 6.4 0.00022 33.2 0.0 30 1016-1045 10-39 (76)
207 2kzr_A Ubiquitin thioesterase 37.6 15 0.00051 32.1 2.2 28 598-625 17-44 (86)
208 2fnj_B Transcription elongatio 36.5 29 0.00098 32.5 4.0 45 1017-1068 12-56 (118)
209 2kdb_A Homocysteine-responsive 36.0 35 0.0012 30.7 4.5 32 595-626 39-72 (99)
210 3tix_A Ubiquitin-like protein 34.9 36 0.0012 34.6 4.6 36 593-628 68-103 (207)
211 3rui_B Autophagy-related prote 34.6 44 0.0015 31.3 4.9 33 709-741 50-82 (118)
212 3v7o_A Minor nucleoprotein VP3 34.4 8.4 0.00029 39.7 0.0 58 708-774 33-90 (227)
213 3goe_A DNA repair protein RAD6 34.4 49 0.0017 28.5 4.6 45 594-642 22-67 (82)
214 1wgd_A Homocysteine-responsive 33.5 35 0.0012 30.0 4.0 45 1018-1069 21-67 (93)
215 1wia_A Hypothetical ubiquitin- 32.9 1.8E+02 0.0063 25.2 8.8 72 688-777 6-78 (95)
216 3q3f_A Ribonuclease/ubiquitin 32.4 37 0.0013 34.5 4.4 31 1016-1046 115-145 (189)
217 3u5c_f 40S ribosomal protein S 32.4 9.5 0.00032 37.5 0.0 58 710-776 15-72 (152)
218 2gow_A HCG-1 protein, ubiquiti 32.3 81 0.0028 29.7 6.5 61 901-969 17-83 (125)
219 3m95_A Autophagy related prote 31.2 46 0.0016 31.4 4.5 33 709-741 56-88 (125)
220 2lxa_A Ubiquitin-like protein 31.2 24 0.00081 31.1 2.4 47 1016-1069 11-60 (87)
221 1ip9_A BEM1 protein; ubiquitin 30.9 66 0.0023 28.1 5.0 55 813-875 21-75 (85)
222 3u5e_m 60S ribosomal protein L 30.9 10 0.00035 35.9 0.0 32 595-626 14-45 (128)
223 4ajy_B Transcription elongatio 30.2 42 0.0014 31.3 4.0 31 1016-1046 11-41 (118)
224 3h9d_A ATG8, microtubule-assoc 29.6 50 0.0017 30.9 4.4 33 709-741 51-83 (119)
225 4efo_A Serine/threonine-protei 29.4 58 0.002 29.1 4.6 34 593-626 25-58 (94)
226 2r2q_A Gamma-aminobutyric acid 28.5 57 0.0019 30.0 4.6 33 708-740 46-78 (110)
227 3uf8_A Ubiquitin-like protein 28.4 61 0.0021 33.3 5.4 47 593-639 32-78 (209)
228 1wgh_A Ubiquitin-like 3, HCG-1 28.3 2.1E+02 0.0073 26.4 8.5 60 902-969 17-82 (116)
229 3shq_A UBLCP1; phosphatase, hy 28.1 43 0.0015 37.0 4.4 32 595-626 18-49 (320)
230 1x1m_A Ubiquitin-like protein 28.0 45 0.0015 30.3 3.8 26 601-626 44-72 (107)
231 2pjh_A Protein NPL4, nuclear p 27.9 35 0.0012 29.4 2.9 29 1019-1047 16-44 (80)
232 3u5c_f 40S ribosomal protein S 27.5 13 0.00044 36.5 0.0 32 595-626 14-45 (152)
233 1se9_A Ubiquitin family; ubiqu 27.5 2.1E+02 0.0073 26.9 8.4 63 900-969 15-82 (126)
234 2zjd_A Microtubule-associated 27.3 65 0.0022 30.6 4.8 34 708-741 55-89 (130)
235 2daf_A FLJ35834 protein; hypot 27.2 49 0.0017 30.9 3.8 73 690-776 16-88 (118)
236 3u5e_m 60S ribosomal protein L 26.9 13 0.00046 35.1 0.0 58 710-776 15-72 (128)
237 1eo6_A GATE-16, golgi-associat 26.4 60 0.002 30.2 4.4 34 708-741 47-80 (117)
238 1v2y_A 3300001G02RIK protein; 26.2 32 0.0011 31.4 2.4 73 690-777 8-96 (105)
239 2kdb_A Homocysteine-responsive 26.2 85 0.0029 28.2 5.3 72 688-772 22-97 (99)
240 1v2y_A 3300001G02RIK protein; 25.4 28 0.00096 31.8 1.9 30 1016-1045 17-46 (105)
241 3ai5_A Yeast enhanced green fl 25.3 1.1E+02 0.0039 33.3 7.0 72 688-774 232-303 (307)
242 1q1o_A Cell division control p 24.9 68 0.0023 28.9 4.2 28 1016-1043 20-49 (98)
243 1ip9_A BEM1 protein; ubiquitin 24.9 66 0.0023 28.1 3.9 28 1016-1043 21-48 (85)
244 3ai5_A Yeast enhanced green fl 24.6 60 0.0021 35.5 4.7 33 594-626 246-278 (307)
245 3shq_A UBLCP1; phosphatase, hy 24.2 71 0.0024 35.2 5.2 30 1016-1045 14-43 (320)
246 3ivf_A Talin-1; FERM domain, c 22.3 6E+02 0.021 28.0 12.7 111 709-849 16-131 (371)
247 2xzm_9 RPS31E; ribosome, trans 21.7 19 0.00066 36.5 0.0 33 594-626 13-45 (189)
248 1x1m_A Ubiquitin-like protein 21.6 97 0.0033 28.0 4.8 54 715-777 44-100 (107)
249 1wia_A Hypothetical ubiquitin- 21.6 61 0.0021 28.5 3.3 41 1016-1066 17-57 (95)
250 1q1o_A Cell division control p 21.6 1.1E+02 0.0037 27.6 4.8 27 813-839 22-48 (98)
251 1pqs_A Cell division control p 21.4 93 0.0032 26.7 4.2 25 1019-1043 4-28 (77)
252 3qx1_A FAS-associated factor 1 21.1 1.4E+02 0.0048 25.6 5.5 60 597-671 23-82 (84)
No 1
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-105 Score=962.04 Aligned_cols=513 Identities=28% Similarity=0.490 Sum_probs=453.2
Q ss_pred HHhhccceeeeecCChhHHHhccccceecccCCCC--ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcC
Q 001242 558 KAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDK--VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTY 635 (1116)
Q Consensus 558 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~ 635 (1116)
++|+|+|++++|+|+++|++|+| |||+|++. ++++||+|++|+.+|++.||+.+|++++++|||.|.+|||+|.
T Consensus 4 ~~EahlY~~vkv~tde~f~~~~G----fDL~d~~~~~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~ 79 (530)
T 2ylm_A 4 GSEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTK 79 (530)
T ss_dssp CTTGGGEEEEEEEEGGGGTTCCS----SSSCCTTTCCCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCE
T ss_pred hhhhhceeEEEEeeHHHHhhccC----CCCcCCccCCcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCcc
Confidence 46999999999999999999999 99998764 4589999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhhhHHHHHhhhccccccceeeEEeeecCC-CCC-CCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEe
Q 001242 636 RPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGP-DLH-PIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLK 713 (1116)
Q Consensus 636 rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~-~~~~~~~~~~~illFlK~fDp~~~~l~~~g~~~v~ 713 (1116)
||+....+.+...++.++.. ...+++||||+.... ... ...++....+++|||||||||.+|+|+|+||++|+
T Consensus 80 Rp~~~~~~~~~~~~~~~~~~-----~~~~~~lflE~~~~~~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~ 154 (530)
T 2ylm_A 80 RPAMLDNEADGNKTMIELSD-----NENPWTIFLETVDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTP 154 (530)
T ss_dssp EECCCCHHHHTTSBHHHHHT-----SCSSEEEEEEECCHHHHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CCccCCccccHHHHHHHHhc-----cCCceEEEEEecccccCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEEC
Confidence 99942111223335555442 235899999996421 111 01245567788999999999999999999999999
Q ss_pred cCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCC-cCCccccc--cCCCCCEEEEEeCCCCCCcccCCCCCH
Q 001242 714 SSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLD-KRTSFRLS--QIEDGDIICFQKSPPLESEQECRYPDV 790 (1116)
Q Consensus 714 ~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~-~~~t~~~~--el~~GDIi~fQ~~~~~~~~~~~~y~~~ 790 (1116)
++++|++|+|.|+++||||+||+|.||||++ |+ +|++|+ ++.||.++ ||++|||||||+..+. ..+..|+||
T Consensus 155 ~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~--~~-~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~--~~~~~y~~v 229 (530)
T 2ylm_A 155 ISCKIRDLLPVMCDRAGFIQDTSLILYEEVK--PN-LTERIQDYDVSLDKALDELMDGDIIVFQKDDPE--NDNSELPTA 229 (530)
T ss_dssp TTCBGGGTHHHHHHHHTCCTTCCEEEEEEEE--TT-EEEECCCSSSBHHHHSTTCCTTEEEEEEECCGG--GGGSSSCSH
T ss_pred CCCCHHHHHHHHHHHcCCCCCCceEEEEecC--CC-ceeEcccccccHHHHHhcccCCCEEEEEecCCc--cccccCCCH
Confidence 9999999999999999999999999999998 76 569999 89999999 9999999999998643 346689999
Q ss_pred HHHHHHHhcceEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCCCccccCcchH
Q 001242 791 PSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHL 870 (1116)
Q Consensus 791 ~~yy~~L~nr~~v~f~~~~~~~~~~f~l~ls~~~~Y~~~a~~va~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l 870 (1116)
.+||+||+||+.|+|++...+++++|+||||++|+|+|||++||++||+ ||.+||||++++|++.|+. +++++.+++|
T Consensus 230 ~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~-dP~~lRf~~~~~~~~~p~~-~i~~~~~~~L 307 (530)
T 2ylm_A 230 KEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNT-DPMLLQFFKSQGYRDGPGN-PLRHNYEGTL 307 (530)
T ss_dssp HHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTS-CGGGEEEECCCTTSCSCCS-BCCTTCCSCH
T ss_pred HHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCC-CchhEEEEecccccCCCCC-ccccCCCCcH
Confidence 9999999999999999987777889999999999999999999999997 6999999999999999985 8888888999
Q ss_pred HHhhhccCC-ccceEEEEEeccChhhhccCceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHHhhccCCC-CCccEE
Q 001242 871 SDMLVHYNQ-TSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSH-PNAELR 948 (1116)
Q Consensus 871 ~~~l~~~~~-~~~~l~YEvL~ipl~elE~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~-~~~~lr 948 (1116)
+|||....+ ..++||||+|+||++|||++|++||+|++++++++ +++|+|||+|||+||++++++++++++ ++++||
T Consensus 308 ~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~-~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lR 386 (530)
T 2ylm_A 308 RDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREE-EITLYPDKHGCVRDLLEECKKAVELGEKASGKLR 386 (530)
T ss_dssp HHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEE-EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEE
T ss_pred HHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceE-EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEE
Confidence 999976333 45899999999999999999999999999988865 999999999999999999999999986 578999
Q ss_pred EEEEeccEEEEecCCcccccccccc-cceeEeeecchhhccC-CCCCeEEEEEEeeccCcccccccccCCccEEEEecCC
Q 001242 949 LLEVFYHKIYKIFAPNEKIENINDQ-YWTLRAEEIPEEEKNL-GPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEG 1026 (1116)
Q Consensus 949 l~~i~~~ki~~~~~~~~~i~~i~~~-~~~~~~E~iP~ee~~~-~~~~~li~V~hf~k~~~~~h~~~~~fG~PF~~~v~~~ 1026 (1116)
||++++|||+++|+.+++|.+|+++ ++.+||||||+||.++ ++++++|+|+||+|++++.| |+||+|+|++|
T Consensus 387 l~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~------G~PF~~~v~~g 460 (530)
T 2ylm_A 387 LLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTF------GIPFLLRIHQG 460 (530)
T ss_dssp EEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEE------EEEEEEEEETT
T ss_pred EEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCccccc------CCCeEEEecCC
Confidence 9999999999999999999999873 5799999999999999 99999999999999998655 99999999999
Q ss_pred CCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCcccccccc--ccc-ccCCCcceeEEecCCCC
Q 001242 1027 ETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRF--QRR-DVYGAWEQYLGLEHSDN 1093 (1116)
Q Consensus 1027 E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~lgldh~~~ 1093 (1116)
|||++||+||++||||++|||+|||||||.++++.|++|++++.+.. .+. ...|++++||||||+||
T Consensus 461 Et~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~~~~l~~~~~~~~~~~~~~~~LgLdH~~k 530 (530)
T 2ylm_A 461 EHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNK 530 (530)
T ss_dssp CCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTCCCCGGGTSCSTTCSSSCCCEEEEECCC-
T ss_pred CcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccceehhhhhhccccccCCccceecccCCCC
Confidence 99999999999999999999999999999999999999988654433 221 11245677999999996
No 2
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=6.7e-93 Score=862.88 Aligned_cols=493 Identities=47% Similarity=0.796 Sum_probs=437.1
Q ss_pred cCCCCcEEEEEEcCccccCCCeeecCcEEEcceEEEEEEEeCCC----CCCceEEEEEecCCCCCCCCceEEEEEEEEEE
Q 001242 48 EDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGN----NVDHLSMYLDVADSGTLPYGWSRYAQFSLAVV 123 (1116)
Q Consensus 48 ~~~~~~~~tw~I~nfS~l~~~~~~Sp~F~vgG~~W~I~lyP~G~----~~~~lSiyL~~~~~~~~~~~W~~~a~f~l~L~ 123 (1116)
+...+++|+|+|+|||.++ +.++|++|.+||++|+|++||+|+ +.++||+||+|.+. ..+.+|+++|+|.|+|+
T Consensus 26 ~~~~~~~~~w~I~nfS~~~-~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~ 103 (522)
T 2f1z_A 26 SWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKII 103 (522)
T ss_dssp CCCSEEEEEEEESSCTTCC-SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEEC
T ss_pred cccCCcEEEEEECChhhcC-CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEE
Confidence 3567899999999999996 489999999999999999999996 34899999999877 44678999999999999
Q ss_pred eecccceeeeecceeeecCCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeeccccccccCCCCcccccccccCC
Q 001242 124 NQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQG 203 (1116)
Q Consensus 124 n~~~~~~~~~~~~~h~F~~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~~~~~~~~~s~~~~g~~GL~N~G 203 (1116)
|+.++..+..+...|+|+....+|||.+||++++|.++++|||.||+++|+|+|+|.. +....|++++.+|++||.|+|
T Consensus 104 n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~-p~g~~~~~~~~~g~~GL~NlG 182 (522)
T 2f1z_A 104 NYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA-PHGVAWDSKKHTGYVGLKNQG 182 (522)
T ss_dssp CTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECC-CBSSCCCTTTTTSCCCBCCC-
T ss_pred cCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccc-cccccCCccccCCccceecCc
Confidence 9998877777778899988888999999999999988889999999999999999854 566789999999999999999
Q ss_pred cccchhhHHHHHhcchhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCcccccchhhhhcccCcccccccccHHHH
Q 001242 204 ATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQEL 283 (1116)
Q Consensus 204 nTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~~~~~~QqDa~Ef 283 (1116)
|||||||+||+|+++|+||++++.++.. ......+++++|++||..|+.+..++.|..|+++|+|..+..++|||||||
T Consensus 183 nTCYmNSvLQ~L~~~~~fr~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~~~~~~~QqDa~Ef 261 (522)
T 2f1z_A 183 ATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQEL 261 (522)
T ss_dssp -CTTHHHHHHHHHTCHHHHHHHHTCCCC-SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTCCCTTTSSTTSCHHHH
T ss_pred ccHHHHHHHHHHhccHHHHHHHhhcccc-CCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcCCccCCCcccccHHHH
Confidence 9999999999999999999999987753 334457899999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCccccccccccceEEeeeEEeeceeeecceeeeeeeeeeeccCCCCHHHHHhhcceeEEecCCCcc
Q 001242 284 NRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKY 363 (1116)
Q Consensus 284 l~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~v~~~~sL~e~L~~~~~~E~l~g~n~y 363 (1116)
++.||+.|+++++++...+.|.++|+|++.+.++|..|++.+.+.|+|++|+|+|++..+|++||+.|+.+|.++|+|+|
T Consensus 262 l~~LLd~L~~~l~~~~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~ 341 (522)
T 2f1z_A 262 CRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKY 341 (522)
T ss_dssp HHHHHHHHHHHHTTSTTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCB
T ss_pred HHHHHHHHHhhccCCccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCCcccchHHHHHhhceeecCCccee
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceeeeeeeEeecCCCeEEEEEeeEEeecccCeeeeccceEecCccccCCcccCCCCCCCcCcCccccEEEEEEE
Q 001242 364 HAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVL 443 (1116)
Q Consensus 364 ~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVV 443 (1116)
.|++|++++|.|+..|.++|+||+||||||.|+..++...|+++.|+||..||| .+|+.... ...+..|+|+|||
T Consensus 342 ~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl----~~~~~~~~-~~~~~~Y~L~avv 416 (522)
T 2f1z_A 342 DAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD-PKDPANYILHAVL 416 (522)
T ss_dssp CCGGGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEEC----GGGBSSCC-TTSCCEEEEEEEE
T ss_pred ecCcCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecc----hhhhcccc-CCCCcEEEEEEEE
Confidence 999999999999999999999999999999999888889999999999999999 78876532 2346789999999
Q ss_pred EeeccCCCceEEEEEecCCCCCEEEEeCceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCCCCcEEEEEEEeecC
Q 001242 444 VHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (1116)
Q Consensus 444 vH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (1116)
+|.|++++|||+||+|+..+++||+|||+.|+++++++|++.+|||.+... ....+.+||||||+|++.
T Consensus 417 ~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~-----------~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 417 VHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp EEECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC-------------------CEEEEEEEEEETTS
T ss_pred EecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCcccc-----------ccCcCCceEEEEEEECCc
Confidence 999999999999999986689999999999999999999999999864210 012346899999999999
Q ss_pred ccccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 001242 524 KDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQ 560 (1116)
Q Consensus 524 ~~~~~~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e 560 (1116)
.++++.++.+.+||+++.+++++|+++.++++||++|
T Consensus 486 ~~~~~~~~~~~~ip~~~~~~~~~e~~~~~~~~~~~~~ 522 (522)
T 2f1z_A 486 LSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522 (522)
T ss_dssp HHHHTCCCCTTTSCSHHHHHHHHTTTCC---------
T ss_pred hHHhhcccCccCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999998875
No 3
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.8e-68 Score=617.43 Aligned_cols=353 Identities=54% Similarity=0.912 Sum_probs=309.9
Q ss_pred CCcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCcccccchhhhhcccC
Q 001242 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWD 270 (1116)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~ 270 (1116)
|+.+|++||.|+||||||||+||+|+++|+||++++..+.. ......+++++|++||..|+.+..+++|..|+++++|.
T Consensus 1 k~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~~~ 79 (353)
T 1nb8_A 1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWE 79 (353)
T ss_dssp CCCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT-TSCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHTCC
T ss_pred CCCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC-CCcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcCCC
Confidence 57899999999999999999999999999999999887652 33445789999999999999998899999999999999
Q ss_pred cccccccccHHHHHHHHHHHHHHhhcCCccccccccccceEEeeeEEeeceeeecceeeeeeeeeeeccCCCCHHHHHhh
Q 001242 271 TYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDK 350 (1116)
Q Consensus 271 ~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~v~~~~sL~e~L~~ 350 (1116)
.+.++.|||||||++.|||.|++++++....+.|.++|+|++.+.++|..|++.|.+.|+|++|+|+|++..+|.++|+.
T Consensus 80 ~~~~~~QqDA~EFl~~LLd~L~~~~~~~~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~~~~l~~~L~~ 159 (353)
T 1nb8_A 80 TLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVD 159 (353)
T ss_dssp BTTTTTTSCHHHHHHHHHHHHHHHTTTSTTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTTCSBHHHHHHH
T ss_pred CCCcccchhHHHHHHHHHHHHHHHhcCCCccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECCCcchHHHHHH
Confidence 99999999999999999999999998887788999999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCcccccccCceeeeeeeEeecCCCeEEEEEeeEEeecccCeeeeccceEecCccccCCcccCCCCCCCcC
Q 001242 351 YVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD 430 (1116)
Q Consensus 351 ~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~ 430 (1116)
|+.+|.++|+|+|.|++|+++.|.|+..|.++|+||+|||+||.|+..++...|+++.|.||..||| .+|+....
T Consensus 160 ~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl----~~~~~~~~- 234 (353)
T 1nb8_A 160 YVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL----DEFLQKTD- 234 (353)
T ss_dssp HTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEEC----GGGBSSCC-
T ss_pred hhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeeh----hhhhcccC-
Confidence 9999999999999999999999999999999999999999999999877778999999999999999 77876532
Q ss_pred cCccccEEEEEEEEeeccCCCceEEEEEecCCCCCEEEEeCceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCCC
Q 001242 431 RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKY 510 (1116)
Q Consensus 431 ~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~ 510 (1116)
...+..|+|+|||+|.|++++|||+||+|+..+++||+|||+.|+++++++|++.+|||.+... ....+
T Consensus 235 ~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~-----------~~~~~ 303 (353)
T 1nb8_A 235 PKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDL-----------SVRHC 303 (353)
T ss_dssp TTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC------------------CC
T ss_pred CCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCcccc-----------ccCcC
Confidence 2346789999999999999999999999986689999999999999999999999999864210 01224
Q ss_pred CcEEEEEEEeecCccccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 001242 511 SNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQ 560 (1116)
Q Consensus 511 ~~AYmL~Y~R~~~~~~~~~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e 560 (1116)
.+||||||+|.+..++++.++.+.+||+++.+++.+|++..++++||++|
T Consensus 304 ~~aYiLfY~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 353 (353)
T 1nb8_A 304 TNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353 (353)
T ss_dssp EEEEEEEEEETTTHHHHTCCCCGGGSCHHHHHHHHHHHHHHHCC------
T ss_pred CeEEEEEEEECchhhhhhcccCccccCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999999999999999999999888875
No 4
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.5e-57 Score=523.94 Aligned_cols=299 Identities=25% Similarity=0.387 Sum_probs=259.4
Q ss_pred CCcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCCC------CCCCCCCHHHHHHHHHHHHhcC-Ccccccchh
Q 001242 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTE------NDLPSGSIPLALQSLFYKLQYN-DTSVATKEL 263 (1116)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~------~~~~~~~~~~~Lq~Lf~~l~~s-~~~v~~~~l 263 (1116)
...+|++||.|+||||||||+||+|+++|+||++++...... ......++..+|+.||..|+.+ ..+++|..|
T Consensus 3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 356899999999999999999999999999999998643211 1112356899999999999986 468999999
Q ss_pred hhhccc--CcccccccccHHHHHHHHHHHHHHhhcCCc-----------------------------cccccccccceEE
Q 001242 264 TKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGHH 312 (1116)
Q Consensus 264 ~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~~ 312 (1116)
.+.+++ +.|.++.|||||||++.|||.|+++++... ..+.|.++|+|++
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l 162 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLF 162 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEE
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEE
Confidence 998874 568889999999999999999999875421 2356889999999
Q ss_pred eeeEEeeceeeecceeeeeeeeeeeccCC-------------------CCHHHHHhhcceeEEecCCCcccccccC-cee
Q 001242 313 MNYIECINVDYKSTRKESFYDLQLDVKGC-------------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQD 372 (1116)
Q Consensus 313 ~~~i~C~~C~~~s~~~e~f~~L~L~v~~~-------------------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~ 372 (1116)
.+.++|..|++.|.+.|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|.|++|+ +++
T Consensus 163 ~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~ 242 (367)
T 2y6e_A 163 KSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQ 242 (367)
T ss_dssp EEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEEC
T ss_pred eeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCce
Confidence 99999999999999999999999999742 4799999999999999999999999998 688
Q ss_pred eeeeeEeecCCCeEEEEEeeEEeecccCeeeeccceEecCc-cccCCcccCCCCCCCcCcCccccEEEEEEEEeeccCCC
Q 001242 373 AKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHG 451 (1116)
Q Consensus 373 a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~ 451 (1116)
|.|+..|.++|+||+||||||.|+. ....|+++.|.||. .||| ++|+..... ....|+|+|||+|.|+.++
T Consensus 243 a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl----~~~~~~~~~--~~~~Y~L~avv~H~G~~~~ 314 (367)
T 2y6e_A 243 ATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNM----SEFVCNLSA--RPYVYDLIAVSNHYGAMGV 314 (367)
T ss_dssp CEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEEC----GGGBSCSSS--CCCEEEEEEEEEEECSSSS
T ss_pred EEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCCh----hhhccCCCC--CCceEEEEEEeecCCCCCC
Confidence 9999999999999999999999973 45789999999997 6999 788765432 4578999999999999999
Q ss_pred ceEEEEEecCCCCCEEEEeCceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCCCCcEEEEEEEeecC
Q 001242 452 GHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (1116)
Q Consensus 452 GHY~ayvr~~~~~~W~~fnD~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (1116)
|||+||+|...+++||+|||+.|+++++++|+ ..+||||||+|++.
T Consensus 315 GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~--------------------------~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 315 GHYTAYAKNKLNGKWYYFDDSNVSLASEDQIV--------------------------TKAAYVLFYQRRDD 360 (367)
T ss_dssp CEEEEEEECTTTCCEEEEETTEEEECCGGGTS--------------------------STTEEEEEEEECCC
T ss_pred CeeeEEEEcCCCCeEEEECCCCceECCHHHcC--------------------------CCCcEEEEEEEcCC
Confidence 99999999977899999999999999988884 14899999999874
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.3e-56 Score=516.76 Aligned_cols=301 Identities=27% Similarity=0.427 Sum_probs=259.6
Q ss_pred CCCCcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCC----CCCCCCCCHHHHHHHHHHHHhc--CCcccccch
Q 001242 189 DSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT----ENDLPSGSIPLALQSLFYKLQY--NDTSVATKE 262 (1116)
Q Consensus 189 ~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~----~~~~~~~~~~~~Lq~Lf~~l~~--s~~~v~~~~ 262 (1116)
++++.+|++||.|+||||||||+||+|+++|+||+++++.... .......++.++|+.||..|+. ....++|..
T Consensus 2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 5788999999999999999999999999999999998764221 1122346789999999999984 457889999
Q ss_pred hhhhcc--cCcccccccccHHHHHHHHHHHHHHhhcCCc-----------------------------cccccccccceE
Q 001242 263 LTKSFG--WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGH 311 (1116)
Q Consensus 263 l~~s~~--~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~ 311 (1116)
|.+.++ .+.+.++.||||+||++.||+.|+++++... ..+.|.++|+|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 998886 3567888999999999999999999986432 134588999999
Q ss_pred EeeeEEeeceeeecceeeeeeeeeeeccCCC----CHHHHHhhcceeEEecCCCcccccccC-ceeeeeeeEeecCCCeE
Q 001242 312 HMNYIECINVDYKSTRKESFYDLQLDVKGCR----DVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVL 386 (1116)
Q Consensus 312 ~~~~i~C~~C~~~s~~~e~f~~L~L~v~~~~----sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL 386 (1116)
+.+.++|..|++.+.+.|+|++|+|+|+... +|+++|+.|+.+|.++|+|+|.|++|+ ++.|.|+..|.++|+||
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL 241 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKIL 241 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEE
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceE
Confidence 9999999999999999999999999998743 899999999999999999999999997 68899999999999999
Q ss_pred EEEEeeEEeecccCeeeeccceEecC-ccccCCcccCCCCCCCcCcCccccEEEEEEEEeeccCCCceEEEEEecCCCCC
Q 001242 387 QLQLKRFEYDFMRDAMVKINDRYEFP-LQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQ 465 (1116)
Q Consensus 387 ~i~LkRF~~d~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~ 465 (1116)
+|||+||.++ +....|++..|+|| ..||| .+|+.... ....|+|+|||+|.|+.++|||+||+|...+++
T Consensus 242 ~i~lkRf~~~--~~~~~K~~~~v~fp~~~ldl----~~~~~~~~---~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~ 312 (348)
T 3nhe_A 242 VLHLKRFSES--RIRTSKLTTFVNFPLRDLDL----REFASENT---NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE 312 (348)
T ss_dssp EEEECCBCCC--SSCCCBCCCCEECCSSCEEC----GGGBCTTC---CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCC
T ss_pred EEEEEccccc--CCceeecCcceeccCCcCCH----hhhcCCCC---CCCcEEEEEEEEccCCCCCcccEEEEccCCCCc
Confidence 9999999875 45678999999999 57999 78876543 356899999999999999999999999977899
Q ss_pred EEEEeCceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCCCCcEEEEEEEeecCc
Q 001242 466 WYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDK 524 (1116)
Q Consensus 466 W~~fnD~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~~ 524 (1116)
||+|||+.|+++++++|. ..+||||||+|.+..
T Consensus 313 W~~~nD~~V~~v~~~~v~--------------------------~~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 313 WHTFNDSSVTPMSSSQVR--------------------------TSDAYLLFYELASPP 345 (348)
T ss_dssp EEEEETTEEEEECGGGTC--------------------------CTTEEEEEEEECC--
T ss_pred EEEEeCCCceECCHHHcC--------------------------CCCceEEEEEecCCC
Confidence 999999999999998883 248999999998754
No 6
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.4e-55 Score=517.33 Aligned_cols=297 Identities=29% Similarity=0.475 Sum_probs=258.2
Q ss_pred CcccccccccCCcccchhhHHHHHhcchhHHHHHccCCC------CCCCCCCCCHHHHHHHHHHHHhcCC-cccccchhh
Q 001242 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT------TENDLPSGSIPLALQSLFYKLQYND-TSVATKELT 264 (1116)
Q Consensus 192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~------~~~~~~~~~~~~~Lq~Lf~~l~~s~-~~v~~~~l~ 264 (1116)
..+|++||.|+||||||||+||+|+++|+||++++.... ........+++.+++.|+..|+.+. ..++|..|.
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 468999999999999999999999999999999976321 1111123568889999999999864 578999999
Q ss_pred hhccc--CcccccccccHHHHHHHHHHHHHHhhcCCc-----------------------------cccccccccceEEe
Q 001242 265 KSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTV-----------------------------VEGTIQQLFEGHHM 313 (1116)
Q Consensus 265 ~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~-----------------------------~~~~i~~lF~g~~~ 313 (1116)
..++. +.|.++.|||||||++.|||.|+++++... ..+.|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 88863 578889999999999999999999986531 24568999999999
Q ss_pred eeEEeeceeeecceeeeeeeeeeeccCC--CCHHHHHhhcceeEEecCCCcccccccC-ceeeeeeeEeecCCCeEEEEE
Q 001242 314 NYIECINVDYKSTRKESFYDLQLDVKGC--RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQL 390 (1116)
Q Consensus 314 ~~i~C~~C~~~s~~~e~f~~L~L~v~~~--~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~L 390 (1116)
+.++|..|++.+.+.|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|.|++|+ +++|.|+..|.++|+||+|||
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihL 297 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHL 297 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEE
T ss_pred EEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEe
Confidence 9999999999999999999999999863 5899999999999999999999999998 678999999999999999999
Q ss_pred eeEEeecccCeeeeccceEecCc-cccCCcccCCCCCCCcCcCccccEEEEEEEEeeccCCCceEEEEEecCCCCCEEEE
Q 001242 391 KRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKF 469 (1116)
Q Consensus 391 kRF~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~f 469 (1116)
|||.|+. ....|+++.|.||. .||| ++|+..+. .....|+|+|||+|.|++++|||+||+|...+++||+|
T Consensus 298 kRF~~~~--~~~~K~~~~v~fp~~~Ldl----~~~~~~~~--~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~f 369 (396)
T 2gfo_A 298 KRFSYDG--RWKQKLQTSVDFPLENLDL----SQYVIGPK--NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKF 369 (396)
T ss_dssp CCEEECS--SSEEECCCEEECCSSCBCC----GGGBCSCC--SSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEE
T ss_pred cceeccC--ccceecCceEecchhhccc----cccccCCC--CCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEE
Confidence 9999974 34689999999995 6999 78876532 23568999999999999999999999999767999999
Q ss_pred eCceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCCCCcEEEEEEEeec
Q 001242 470 DDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1116)
Q Consensus 470 nD~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1116)
||+.|+++++++|+ +.+||||||+|.+
T Consensus 370 nD~~V~~v~~~~v~--------------------------~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 370 DDHEVSDISVSSVK--------------------------SSAAYILFYTSLG 396 (396)
T ss_dssp ETTEEEECCHHHHS--------------------------CTTEEEEEEECC-
T ss_pred eCCCeEECCHHHcC--------------------------CCCceEEEEEEcC
Confidence 99999999998884 2489999999864
No 7
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=7.6e-56 Score=511.78 Aligned_cols=293 Identities=27% Similarity=0.444 Sum_probs=251.1
Q ss_pred ccccccccCCcccchhhHHHHHhcchhHHHHHccCCCC---CCCCCCCCHHHHHHHHHHHHhcCC--cccccchhhhhcc
Q 001242 194 TGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT---ENDLPSGSIPLALQSLFYKLQYND--TSVATKELTKSFG 268 (1116)
Q Consensus 194 ~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~~~~~Lq~Lf~~l~~s~--~~v~~~~l~~s~~ 268 (1116)
||++||.|+||||||||+||+|+++|+||++++..... .......++..+|+.||..|+.+. .+++|..|.+.++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 69999999999999999999999999999999864321 111223579999999999999853 6899999999886
Q ss_pred --cCcccccccccHHHHHHHHHHHHHHhhcCCc--------------------------------------------ccc
Q 001242 269 --WDTYDSFMQHDVQELNRVLCEKLEDKMKGTV--------------------------------------------VEG 302 (1116)
Q Consensus 269 --~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~--------------------------------------------~~~ 302 (1116)
++.|.++.||||+||+..|||.|+++++... ..+
T Consensus 81 ~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 160 (355)
T 3i3t_A 81 KYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDS 160 (355)
T ss_dssp HHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCCS
T ss_pred HhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccCC
Confidence 5678899999999999999999999986432 124
Q ss_pred ccccccceEEeeeEEeeceeeecceeeeeeeeeeeccCC------CCHHHHHhhcceeEEecCCCcccccccC-ceeeee
Q 001242 303 TIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGC------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKK 375 (1116)
Q Consensus 303 ~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~v~~~------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k 375 (1116)
.|.++|+|++.+.++|..|++.+.+.|+|++|+|+++.. .+|+++|+.|+.+|.++|+|+|.|++|+ ++.|.|
T Consensus 161 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k 240 (355)
T 3i3t_A 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTK 240 (355)
T ss_dssp HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEE
T ss_pred cccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEE
Confidence 588999999999999999999999999999999999763 4999999999999999999999999997 789999
Q ss_pred eeEeecCCCeEEEEEeeEEeecccCeeeeccceEecCc-cccCCcccCCCCCCCcCcCccccEEEEEEEEeeccCCCceE
Q 001242 376 GVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPL-QLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHY 454 (1116)
Q Consensus 376 ~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY 454 (1116)
+..|.++|+||+|||+||.++ .+...|++..|.||. .||| ++|+... .....|+|+|||+|.|+.++|||
T Consensus 241 ~~~i~~lP~vL~i~lkRF~~~--~~~~~K~~~~v~fp~~~l~l----~~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY 311 (355)
T 3i3t_A 241 KLTVQRFPRILVLHLNRFSAS--RGSIKKSSVGVDFPLQRLSL----GDFASDK---AGSPVYQLYALCNHSGSVHYGHY 311 (355)
T ss_dssp EEEEEECCSEEEEEECCEECC--SSCCEECCCCCBCCSSCEEC----GGGBC-------CCEEEEEEEEEEEEETTEEEE
T ss_pred EEEcccCChheEEEhhheecC--CCCceECCcceeCCccccCc----hhhccCC---CCCcceEEEEEEEecCCCCCCeE
Confidence 999999999999999999985 467789999999995 5999 7777643 24568999999999999999999
Q ss_pred EEEEecCCCCCEEEEeCceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCCCCcEEEEEEEeecC
Q 001242 455 YAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESD 523 (1116)
Q Consensus 455 ~ayvr~~~~~~W~~fnD~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~~ 523 (1116)
+||+|. +++||+|||+.|+++++++|+. .+||||||+|.+.
T Consensus 312 ~~~~~~--~~~W~~~nD~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 312 TALCRC--QTGWHVYNDSRVSPVSENQVAS--------------------------SEGYVLFYQLMQE 352 (355)
T ss_dssp EEEEEE--TTEEEEEETTEEEEECHHHHHT--------------------------SCCSEEEEEEC--
T ss_pred EEEEEc--CCeEEEEcCCCcEECCHHHcCC--------------------------CCcEEEEEEeccC
Confidence 999998 5779999999999999999963 3899999999864
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=5e-55 Score=514.56 Aligned_cols=302 Identities=23% Similarity=0.378 Sum_probs=255.9
Q ss_pred cccccccccCCcccchhhHHHHHhcchhHHHHHccCCCC--CC--CCCCCCHHHHHHHHHHHHhcCCcccccchhhhhcc
Q 001242 193 ETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT--EN--DLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFG 268 (1116)
Q Consensus 193 ~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~--~~--~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~ 268 (1116)
..+++||.|+||||||||+||+|+++|+||++++..... .+ ..+..++.++|++||..|+.+..+++|..|++.++
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v~P~~~~~~l~ 90 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLH 90 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEECCHHHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcCChHHHHHHHH
Confidence 456799999999999999999999999999999876542 11 11235799999999999999888999999988775
Q ss_pred c--Cccc------ccccccHHHHHHHHHHHHHHhhcCCc-------------------cccccccccceEEeeeEEeece
Q 001242 269 W--DTYD------SFMQHDVQELNRVLCEKLEDKMKGTV-------------------VEGTIQQLFEGHHMNYIECINV 321 (1116)
Q Consensus 269 ~--~~~~------~~~QqDa~Efl~~Lld~Le~~~~~~~-------------------~~~~i~~lF~g~~~~~i~C~~C 321 (1116)
. +.|. ++.|||||||++.||+.|+++++... ..+.|.++|+|++.+.++|..|
T Consensus 91 ~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~~C 170 (404)
T 2ayn_A 91 MAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170 (404)
T ss_dssp HHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEESSS
T ss_pred HhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEecCC
Confidence 2 2333 58999999999999999999987542 3467899999999999999999
Q ss_pred eeec--ceeeeeeeeeeeccCC-CCHHHHHhhcceeEEecCCCcccccccC-ceeeeeeeEeecCCCeEEEEEeeEEeec
Q 001242 322 DYKS--TRKESFYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 397 (1116)
Q Consensus 322 ~~~s--~~~e~f~~L~L~v~~~-~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~d~ 397 (1116)
++.+ .+.|+|++|+|+|++. .+|+++|+.++. |.++ |.|+.|+ .+.+.|+..|.++|+||+|||+||.|+.
T Consensus 171 ~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~ 245 (404)
T 2ayn_A 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKE 245 (404)
T ss_dssp CCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCC
T ss_pred CCccCceeeccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEec
Confidence 9995 7999999999999875 589999999997 4443 7899998 5679999999999999999999999998
Q ss_pred ccCeeeeccceEecCccccCCcccCCCCCCCc-----------------------------------------------C
Q 001242 398 MRDAMVKINDRYEFPLQLDLDRENGKYLSPDA-----------------------------------------------D 430 (1116)
Q Consensus 398 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~-----------------------------------------------~ 430 (1116)
.++...|+++.|.||..||| .+|+..+. .
T Consensus 246 ~~~~~~Ki~~~v~fP~~Ldl----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 321 (404)
T 2ayn_A 246 KESVNAKVLKDVKFPLMLDM----YELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIG 321 (404)
T ss_dssp SSSSCCBCCCCCBCCSEEEC----GGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTT
T ss_pred ccCceeccCceeccCceeEH----hHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccC
Confidence 77788999999999999999 56654310 0
Q ss_pred cCccccEEEEEEEEeec-cCCCceEEEEEecCCCCCEEEEeCceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCC
Q 001242 431 RSVRNLYTLHSVLVHSG-GVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTK 509 (1116)
Q Consensus 431 ~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~~~~~~W~~fnD~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~ 509 (1116)
......|+|+|||+|.| ++++|||+||||.. +++||+|||+.|+++++++|+...+||.
T Consensus 322 ~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~v~~~~~g~~------------------- 381 (404)
T 2ayn_A 322 SNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGD------------------- 381 (404)
T ss_dssp TCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSS-------------------
T ss_pred cCCCceEEEEEEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHHHHhhhCCCC-------------------
Confidence 12357899999999999 69999999999984 7899999999999999999988776653
Q ss_pred CCcEEEEEEEeecC
Q 001242 510 YSNAYMLVYIRESD 523 (1116)
Q Consensus 510 ~~~AYmL~Y~R~~~ 523 (1116)
+.+||||||+|++.
T Consensus 382 ~~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 382 WHIAYVLLYGPRRV 395 (404)
T ss_dssp SCEEEEEEEECC--
T ss_pred CceEEEEEEEecCC
Confidence 35899999999874
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=3.4e-54 Score=509.33 Aligned_cols=299 Identities=24% Similarity=0.358 Sum_probs=249.1
Q ss_pred CCcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCCCCCCC--------CCCHHHHHHHHHHHHhcCC-cccccc
Q 001242 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLP--------SGSIPLALQSLFYKLQYND-TSVATK 261 (1116)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~--------~~~~~~~Lq~Lf~~l~~s~-~~v~~~ 261 (1116)
....+++||.|+||||||||+||+|+++|+||++++.......... ..+++++|++||..|+.+. .+++|.
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~ 98 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPV 98 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCH
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHH
Confidence 3456779999999999999999999999999999987664322211 2379999999999999876 889999
Q ss_pred hhhhhcc--cCccc-------ccccccHHHHHHHHHHHHHHhhcCCccccccccccceEEeeeEEeeceeeec--ceeee
Q 001242 262 ELTKSFG--WDTYD-------SFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKS--TRKES 330 (1116)
Q Consensus 262 ~l~~s~~--~~~~~-------~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~C~~~s--~~~e~ 330 (1116)
.|.+.++ .+.|. .+.||||+||++.||+.|+++++. +.|.++|+ ++.+.++|..|++.+ .+.|+
T Consensus 99 ~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~----~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~ 173 (415)
T 1vjv_A 99 VLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD----KFSEDFRI-QFKTTIKDTANDNDITVKENES 173 (415)
T ss_dssp HHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----HHHTTTCE-EEEEEEEETTEEEEEEEECCCE
T ss_pred HHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----chHHHHHH-hheEEEEECCCCCCcccccccc
Confidence 9988764 23344 789999999999999999999864 67999999 999999999999987 58999
Q ss_pred eeeeeeeccCC-CCHHHHHhhcceeEEecCCCcccccccC-ceeeeeeeEeecCCCeEEEEEeeEEeecccCeeeeccce
Q 001242 331 FYDLQLDVKGC-RDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDR 408 (1116)
Q Consensus 331 f~~L~L~v~~~-~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~ 408 (1116)
|++|+|+|++. .+|++||+.++..+ ++ |.|+.|+ .+.+.|+..|.++|+||+|||+||.|+..++...|+++.
T Consensus 174 f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~ 248 (415)
T 1vjv_A 174 DSKLQCHISGTTNFMRNGLLEGLNEK-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRK 248 (415)
T ss_dssp ESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCC
T ss_pred ceeeeeccccccchHHHHHHHHhhhh-hh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCc
Confidence 99999999875 58999999999743 43 7899997 678999999999999999999999999888889999999
Q ss_pred EecCccccCCcccCCCCCCCc-----------------------------------------------------------
Q 001242 409 YEFPLQLDLDRENGKYLSPDA----------------------------------------------------------- 429 (1116)
Q Consensus 409 v~fP~~Ldl~~~~~~~l~~~~----------------------------------------------------------- 429 (1116)
|+||..||| .+|+..+.
T Consensus 249 V~FP~~Ldl----~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 324 (415)
T 1vjv_A 249 VVFPFQLDV----ADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQW 324 (415)
T ss_dssp CBCCSEEEC----GGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEeEh----HHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhh
Confidence 999999999 66654310
Q ss_pred --------------CcCccccEEEEEEEEeec-cCCCceEEEEEec-CCCCCEEEEeCceeeEechHhHHHHhcCCCCCC
Q 001242 430 --------------DRSVRNLYTLHSVLVHSG-GVHGGHYYAFIRP-TLSDQWYKFDDERVTKEDVKRALEEQYGGEEEL 493 (1116)
Q Consensus 430 --------------~~~~~~~Y~L~gVVvH~G-s~~~GHY~ayvr~-~~~~~W~~fnD~~Vt~v~~~~vl~~~fGg~~~~ 493 (1116)
.......|+|+|||+|.| ++++|||+||||. ..+++||+|||+.|+++++++|+...+||.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~--- 401 (415)
T 1vjv_A 325 LEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE--- 401 (415)
T ss_dssp HHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTT---
T ss_pred hhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCC---
Confidence 112357899999999999 7999999999998 558999999999999999999988877753
Q ss_pred CCCCCCCCCCCcccCCCCcEEEEEEEeec
Q 001242 494 PPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1116)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1116)
+.+||||||+|++
T Consensus 402 ----------------~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 402 ----------------SDSALILMYKGFG 414 (415)
T ss_dssp ----------------SCEEEEEEEEETT
T ss_pred ----------------cceEEEEEEEecC
Confidence 3589999999975
No 10
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=5.7e-52 Score=498.86 Aligned_cols=299 Identities=29% Similarity=0.483 Sum_probs=253.4
Q ss_pred CCcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCC---CCCCCCCCHHHHHHHHHHHHhcCCc----------c
Q 001242 191 KKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTT---ENDLPSGSIPLALQSLFYKLQYNDT----------S 257 (1116)
Q Consensus 191 ~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~~~~~Lq~Lf~~l~~s~~----------~ 257 (1116)
...+|++||.|+||||||||+||+|+++|+||++++..... ....+..++.++|+.+|..|+.... .
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~ 215 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTST 215 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--------CC
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccccccccccc
Confidence 46789999999999999999999999999999999853211 1234467899999999999986321 2
Q ss_pred cccchhhhhcc-----cCcccccccccHHHHHHHHHHHHHHhhcCC-------------ccccccccccceEEeeeEEee
Q 001242 258 VATKELTKSFG-----WDTYDSFMQHDVQELNRVLCEKLEDKMKGT-------------VVEGTIQQLFEGHHMNYIECI 319 (1116)
Q Consensus 258 v~~~~l~~s~~-----~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~-------------~~~~~i~~lF~g~~~~~i~C~ 319 (1116)
+.+..+...++ .+.|.++.||||+||++.||+.|++++... ...++|.++|+|++.+.++|.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~~~C~ 295 (476)
T 3mhs_A 216 NRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCP 295 (476)
T ss_dssp CSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEEEECT
T ss_pred cCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEEEEEC
Confidence 34444433321 356888999999999999999999887421 124578999999999999999
Q ss_pred ceeeecc-eeeeeeeeeeeccCCCCHHHHHhhcceeEEecCCCcccccccC-ceeeeeeeEeecCCCeEEEEEeeEEeec
Q 001242 320 NVDYKST-RKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHG-LQDAKKGVLFIDFPPVLQLQLKRFEYDF 397 (1116)
Q Consensus 320 ~C~~~s~-~~e~f~~L~L~v~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~d~ 397 (1116)
.|++++. +.++|++|+|+|++..+|+++|+.|+.+|.++|.+ |.|+.|+ ++.|.|+..|.++|+||+|||+||.|+.
T Consensus 296 ~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~ 374 (476)
T 3mhs_A 296 GCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL 374 (476)
T ss_dssp TTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECT
T ss_pred CCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccC
Confidence 9999975 48999999999999999999999999999999755 9999998 6789999999999999999999999975
Q ss_pred ccCeeeeccceEecCccccCCcccCCCCCCCcC-------cCccccEEEEEEEEeeccCCCceEEEEEecCCCCCEEEEe
Q 001242 398 MRDAMVKINDRYEFPLQLDLDRENGKYLSPDAD-------RSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFD 470 (1116)
Q Consensus 398 ~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~-------~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fn 470 (1116)
.+...|+++.|.||..||| .+|+..... ......|+|+|||+|.|+.++|||+||+|.. +++||+||
T Consensus 375 -~~~~~K~~~~V~fP~~Ldl----~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~-~~~W~~fn 448 (476)
T 3mhs_A 375 -NGSNRKLDDFIEFPTYLNM----KNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKIS-GGQWFKFN 448 (476)
T ss_dssp -TSCEEECCCCCBCCSEEEC----GGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECT-TSCEEEEE
T ss_pred -CCCeEECCEEEcCCCeeec----hhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEECC-CCcEEEEe
Confidence 3568899999999999999 777765432 2346789999999999999999999999975 78999999
Q ss_pred CceeeEechHhHHHHhcCCCCCCCCCCCCCCCCCcccCCCCcEEEEEEEeec
Q 001242 471 DERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRES 522 (1116)
Q Consensus 471 D~~Vt~v~~~~vl~~~fGg~~~~~~~~~~~~~~~~~~~~~~~AYmL~Y~R~~ 522 (1116)
|+.|+++++++|+. .+||||||+|++
T Consensus 449 D~~V~~v~~~~v~~--------------------------~~aYiLfY~r~~ 474 (476)
T 3mhs_A 449 DSMVSSISQEEVLK--------------------------EQAYLLFYTIRQ 474 (476)
T ss_dssp TTEEEEECHHHHTT--------------------------SCEEEEEEEEEE
T ss_pred CCceEECCHHHhcc--------------------------CCcEEEEEEEec
Confidence 99999999999962 389999999975
No 11
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-49 Score=500.56 Aligned_cols=223 Identities=22% Similarity=0.330 Sum_probs=196.6
Q ss_pred CcccccccccCCcccchhhHHHHHhcchhHHHHHccCCC----CCCCCCCCCHHHHHHHHHHHHhcC-------------
Q 001242 192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT----TENDLPSGSIPLALQSLFYKLQYN------------- 254 (1116)
Q Consensus 192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~----~~~~~~~~~~~~~Lq~Lf~~l~~s------------- 254 (1116)
..+|++||.|+||||||||+||+|+++|+||++++.... .....+..++.++|++||..|+.+
T Consensus 340 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~ 419 (854)
T 3ihp_A 340 FGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGE 419 (854)
T ss_dssp CSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC------------
T ss_pred cCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccc
Confidence 467999999999999999999999999999999974221 122345578999999999999853
Q ss_pred --------Ccccccchhhhhccc--CcccccccccHHHHHHHHHHHHHHhhcCCccccccccccceEEeeeEEeeceeee
Q 001242 255 --------DTSVATKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYK 324 (1116)
Q Consensus 255 --------~~~v~~~~l~~s~~~--~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~C~~~ 324 (1116)
...++|..|...+++ +.|..+.||||+||+..||+.|++++++ .+.|.++|+|++.+.++|..|+++
T Consensus 420 ~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~---~s~i~~lF~G~l~s~i~C~~C~~v 496 (854)
T 3ihp_A 420 RVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS---SENPNEVFRFLVEEKIKCLATEKV 496 (854)
T ss_dssp ---------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT---SCCGGGGTCEEEEEEEEETTTTEE
T ss_pred cccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc---cCCchhhcCceEEEEEEecCCCCE
Confidence 347889999998874 5788899999999999999999999865 457899999999999999999999
Q ss_pred cceeeeeeeeeeeccCC--------------------------------CCHHHHHhhcceeEEecCCCcccccccC-ce
Q 001242 325 STRKESFYDLQLDVKGC--------------------------------RDVYASFDKYVEVERLEGDNKYHAEEHG-LQ 371 (1116)
Q Consensus 325 s~~~e~f~~L~L~v~~~--------------------------------~sL~e~L~~~~~~E~l~g~n~y~C~~c~-~~ 371 (1116)
+.+.++|++|+|+|+.. .+|++||+.|+.+|.++| |.|+.|+ ++
T Consensus 497 s~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~ 573 (854)
T 3ihp_A 497 KYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKS 573 (854)
T ss_dssp EEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEE
T ss_pred eEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcc
Confidence 99999999999999853 389999999999999997 9999998 67
Q ss_pred eeeeeeEeecCCCeEEEEEeeEEeecccCeeeeccceEecCccccCCccc
Q 001242 372 DAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDREN 421 (1116)
Q Consensus 372 ~a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~ 421 (1116)
.|.|+..|.++|+||+||||||.|+.. +...|++..|.||..|||++|.
T Consensus 574 ~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~ 622 (854)
T 3ihp_A 574 VAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLR 622 (854)
T ss_dssp EEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGB
T ss_pred eeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhc
Confidence 999999999999999999999999865 6788999999999999995543
No 12
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.91 E-value=2.7e-25 Score=247.75 Aligned_cols=217 Identities=18% Similarity=0.232 Sum_probs=139.8
Q ss_pred ccccccCCcccchhhHHHHHhcchhHHHHHccCCCCCCCCCC-CCHHHHH-HHHHHHHhcCCcccccchhhhh-------
Q 001242 196 YVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPS-GSIPLAL-QSLFYKLQYNDTSVATKELTKS------- 266 (1116)
Q Consensus 196 ~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~-~~~~~~L-q~Lf~~l~~s~~~v~~~~l~~s------- 266 (1116)
.+||.|+||||||||.||+|+.+|.+++.++..+......+. ..+..+| ..+|..|.. .++.|..++..
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~LR~~~pQ 86 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI--YGYVCATKIMKLRKILEK 86 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhHH
Confidence 489999999999999999999999999999877643222111 2477788 899999986 56666554433
Q ss_pred cccCcccccccccHHHHHHHHHHHHHHh-hc--CCc-----cccccccccceEEeeeEEeeceeeecceeeeeeeeeeec
Q 001242 267 FGWDTYDSFMQHDVQELNRVLCEKLEDK-MK--GTV-----VEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDV 338 (1116)
Q Consensus 267 ~~~~~~~~~~QqDa~Efl~~Lld~Le~~-~~--~~~-----~~~~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~v 338 (1116)
|++.....++||||.||+..|+..|... .. ... ..+.+.++|. ++. +.
T Consensus 87 fae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~--------------E~~--e~-------- 142 (374)
T 2vhf_A 87 VEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM--------------EKN--EK-------- 142 (374)
T ss_dssp HC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC--------------CCC------------
T ss_pred HhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc--------------Ccc--cc--------
Confidence 3444334689999999999999988653 21 000 0012222222 000 00
Q ss_pred cCCCCHHHHHhhcceeEEecCCCcccccccCceeeeeeeEeecCCCeEEEEEeeEEeecccCeeeeccceEecCccccCC
Q 001242 339 KGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLD 418 (1116)
Q Consensus 339 ~~~~sL~e~L~~~~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~~Ldl~ 418 (1116)
....+.+..++.. -...++.|.++|++|+||+.|| +...||-++|.||.+||+.
T Consensus 143 ~~~e~~~qL~e~n--------------------fl~~gikisrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvt 196 (374)
T 2vhf_A 143 VGVPTIQQLLEWS--------------------FINSNLKFAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNIT 196 (374)
T ss_dssp CCCCBHHHHHHHH--------------------HHHHTEEESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCG
T ss_pred cCCcHHHHhhhHH--------------------HHHcCCeeecCCcceEEeeecc------CccccccCCCCCcchhccH
Confidence 0011222222110 0122344999999999999999 4567999999999999994
Q ss_pred cccCCCCCCCc------------------------------------------------------------------CcC
Q 001242 419 RENGKYLSPDA------------------------------------------------------------------DRS 432 (1116)
Q Consensus 419 ~~~~~~l~~~~------------------------------------------------------------------~~~ 432 (1116)
. +++++. ...
T Consensus 197 d----l~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 272 (374)
T 2vhf_A 197 D----LLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCI 272 (374)
T ss_dssp G----GBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC--------------
T ss_pred h----hcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCC
Confidence 2 221100 001
Q ss_pred ccccEEEEEEEEeeccCCCceEEEEEecC-CCCCEEEEeCc
Q 001242 433 VRNLYTLHSVLVHSGGVHGGHYYAFIRPT-LSDQWYKFDDE 472 (1116)
Q Consensus 433 ~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~-~~~~W~~fnD~ 472 (1116)
....|+|.|||+ +++|||+||||.. .+++|+.||--
T Consensus 273 psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 273 PCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp --CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred CceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEech
Confidence 136899999999 8999999999973 37899999863
No 13
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.90 E-value=1.1e-23 Score=214.05 Aligned_cols=133 Identities=27% Similarity=0.509 Sum_probs=116.6
Q ss_pred cCCCCcEEEEEEcCccccCCCeeecCcEEEcceEEEEEEEeCCCC----CCceEEEEEecCCCCCCCCceEEEEEEEEEE
Q 001242 48 EDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNN----VDHLSMYLDVADSGTLPYGWSRYAQFSLAVV 123 (1116)
Q Consensus 48 ~~~~~~~~tw~I~nfS~l~~~~~~Sp~F~vgG~~W~I~lyP~G~~----~~~lSiyL~~~~~~~~~~~W~~~a~f~l~L~ 123 (1116)
+...+++|+|+|+|||.++ +.++||+|.+||++|+|++||+|++ .++||+||+|... ..+.+|+++|+|+|+|+
T Consensus 14 ~~~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~ 91 (155)
T 2foj_A 14 SWRSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKII 91 (155)
T ss_dssp TTCSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEEC
T ss_pred CcCCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEE
Confidence 4567899999999999995 8999999999999999999999963 4799999999654 34678999999999999
Q ss_pred eecccceeeeecceeeecCCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeecc
Q 001242 124 NQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1116)
Q Consensus 124 n~~~~~~~~~~~~~h~F~~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~~ 182 (1116)
||.++..+..+...|+|.....+|||.+||++++|.++++|||+||+++|+|+|+|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~ 150 (155)
T 2foj_A 92 NYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAP 150 (155)
T ss_dssp CSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCC
T ss_pred cCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCc
Confidence 99887655566678999887889999999999999988899999999999999999553
No 14
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=99.89 E-value=9.3e-24 Score=204.88 Aligned_cols=128 Identities=25% Similarity=0.446 Sum_probs=109.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccceeeeecCChhHHHhccccceecccCCCC--ceEEEEeccccHHHHHHHHH
Q 001242 535 DIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDK--VRSFRVQKQTSFMAFKEEIA 612 (1116)
Q Consensus 535 ~ip~~l~~~~~~e~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~--~~~~~~~~~~~~~~~~~~i~ 612 (1116)
+||+||..++++|+++.++++||++|+|+|++|+|+++++|..|+| |||+|++. .++|||+|++++.+|++.||
T Consensus 1 ~iP~hL~~rl~eE~~~~e~rrKEr~EahlY~~vkv~t~~~f~~~~g----fDL~~~~~~~~~~~rv~k~~~~~~~~~~va 76 (130)
T 2kvr_A 1 GSPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQG----NDMYDEEKVKYTVFKVLKNSSLAEFVQSLS 76 (130)
T ss_dssp --CTHHHHHHHHHHTTHHHHTCCCCSSTTCCEEEEECCSTTTTCCC----CSSCCSSSCSCEEEECCTTSBHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHhceeEEEEecHHHHHhccC----ccCcCCccCCcceEEEeccCcHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999 99998774 46899999999999999999
Q ss_pred HHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEee
Q 001242 613 KEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1116)
Q Consensus 613 ~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 671 (1116)
+.+|+|++++|||.|.+|+|+|.||+. .+ .+.|++++...... ...+++||||+
T Consensus 77 ~~lg~~~~~~RlW~~~~RqN~T~Rp~~--~d--~~~t~~~~~~~~~~-~~~~~~l~lE~ 130 (130)
T 2kvr_A 77 QTMGFPQDQIRLWPMQARSNGTKRPAM--LD--NEADGNKTMIELSD-NENPWTIFLET 130 (130)
T ss_dssp HHHCCCGGGCEEEECCCCBTTBCCCCC--CC--TTGGGTSBTHHHHT-SCSSEEEEEEC
T ss_pred HHhCCCcccEEEEEeecCCCCCCCCCC--CC--ccccHHHHHHHhhc-CCCCcEEEEeC
Confidence 999999999999999999999999983 22 22344444422222 34689999995
No 15
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.88 E-value=5.1e-23 Score=206.58 Aligned_cols=130 Identities=28% Similarity=0.446 Sum_probs=112.3
Q ss_pred cCCCCcEEEEEEcCccccC---CCeeecCcEEEcce---EEEEEEEeCCCC---CCceEEEEEecCCCCCCCCceEEEEE
Q 001242 48 EDPPTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQF 118 (1116)
Q Consensus 48 ~~~~~~~~tw~I~nfS~l~---~~~~~Sp~F~vgG~---~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~~~W~~~a~f 118 (1116)
.....++|+|+|+|||.++ ++.+.||+|.+||| +|+|++||+|++ .+|||+||+|.+. ..|.++|+|
T Consensus 6 ~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f 81 (145)
T 3ivv_A 6 GKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKF 81 (145)
T ss_dssp CCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEE
T ss_pred CcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEE
Confidence 4567899999999999986 36899999999996 999999999975 4899999999864 469999999
Q ss_pred EEEEEeecccceee-eecceeeecCCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeecc
Q 001242 119 SLAVVNQIHSKYSI-RKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1116)
Q Consensus 119 ~l~L~n~~~~~~~~-~~~~~h~F~~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~~ 182 (1116)
+|+|+||.++.... .....|+|. ...+|||.+||++++|.++++|||+||+++|+|+|.|++|
T Consensus 82 ~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 82 KFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 99999998776443 334578896 4688999999999999877899999999999999999864
No 16
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.84 E-value=3.8e-22 Score=207.11 Aligned_cols=133 Identities=18% Similarity=0.338 Sum_probs=111.0
Q ss_pred CCCCcEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEEecCCCC-CCCCceEE
Q 001242 49 DPPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGT-LPYGWSRY 115 (1116)
Q Consensus 49 ~~~~~~~tw~I~nfS~l~~-------~~~~Sp~F~vg--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~-~~~~W~~~ 115 (1116)
.+.+|+|+|+|+|||.+++ ..+.||+|.+| ||+|+|++||+|++ .+|||+||.|.+++. ....|++.
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 4678999999999998752 27999999999 99999999999974 489999999976543 23579999
Q ss_pred EEEEEEEEeecccceeeeec-----ceeeec----CCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeec
Q 001242 116 AQFSLAVVNQIHSKYSIRKD-----TQHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1116)
Q Consensus 116 a~f~l~L~n~~~~~~~~~~~-----~~h~F~----~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~ 181 (1116)
|+|+|+|+||.++..+.... ..+.|. ..+.+|||.+||++++|.++.+|||+||+++|+|.|.|.+
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 99999999998765444332 346776 3467899999999999988889999999999999998755
No 17
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.82 E-value=2.1e-21 Score=204.28 Aligned_cols=134 Identities=19% Similarity=0.327 Sum_probs=109.8
Q ss_pred CCCCcEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEEecCCCCC-CCCceEE
Q 001242 49 DPPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRY 115 (1116)
Q Consensus 49 ~~~~~~~tw~I~nfS~l~~-------~~~~Sp~F~vg--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~-~~~W~~~ 115 (1116)
....|+|+|+|+|||.+++ +.+.||+|.+| ||+|+|++||+|++ .+|||+||.+.+++.+ ...|+|.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 3567999999999998753 57999999999 99999999999975 4799999999876543 3489999
Q ss_pred EEEEEEEEeecccceeeeec---------ceeeecCCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeecccc
Q 001242 116 AQFSLAVVNQIHSKYSIRKD---------TQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLD 184 (1116)
Q Consensus 116 a~f~l~L~n~~~~~~~~~~~---------~~h~F~~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~~~~ 184 (1116)
|+|+|+|+||.+...+.... ..+.|...+.+|||.+||++++|.+ +|||+||+++|+|.|.|+..++
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence 99999999998654333221 1233555677999999999999953 8999999999999999988654
No 18
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.81 E-value=5.3e-21 Score=201.05 Aligned_cols=130 Identities=21% Similarity=0.390 Sum_probs=106.6
Q ss_pred CCCcEEEEEEcCccccCCC-------eeecCcEEE--cceEEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEE
Q 001242 50 PPTMKFTWTIENFSRLNTK-------KHYSDVFVV--GGYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (1116)
Q Consensus 50 ~~~~~~tw~I~nfS~l~~~-------~~~Sp~F~v--gG~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~-~~W~~~a 116 (1116)
...++|+|+|+|||.++++ .++||+|.+ |||+|+|++||+|++ .+|||+||.+.+++..+ .+|+++|
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 4789999999999998522 499999999 999999999999974 48999999998775544 6899999
Q ss_pred EEEEEEEeecccceeeeecc-----eeeec----CCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeec
Q 001242 117 QFSLAVVNQIHSKYSIRKDT-----QHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1116)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~~-----~h~F~----~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~ 181 (1116)
+|+|+|+||.++.. ..... .+.|. ..+.+|||.+||++++|.+ ++|||+||+++|+|+|.|.+
T Consensus 120 ~~~l~lldq~~~~~-~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCC-EEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCce-eeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 99999999987742 22111 22353 2456899999999999975 58999999999999998854
No 19
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.80 E-value=2.4e-20 Score=190.23 Aligned_cols=130 Identities=21% Similarity=0.342 Sum_probs=100.8
Q ss_pred CCcEEEEEEcCccccCC-----C--eeecCcEEEc--ceEEEEEEEeCCCC----CCceEEEEEecCCCCC-CCCceEEE
Q 001242 51 PTMKFTWTIENFSRLNT-----K--KHYSDVFVVG--GYKWRILIFPKGNN----VDHLSMYLDVADSGTL-PYGWSRYA 116 (1116)
Q Consensus 51 ~~~~~tw~I~nfS~l~~-----~--~~~Sp~F~vg--G~~W~I~lyP~G~~----~~~lSiyL~~~~~~~~-~~~W~~~a 116 (1116)
..|+|+|+|+|||.+++ + .+.||+|.+| ||+|+|++||+|++ .+|||+||.+.+++.. ...|++.|
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 56899999999998852 3 7999999999 99999999999963 4799999999866543 34799999
Q ss_pred EEEEEEEeecccce--eeeec-----ceeeecC-----CCCCCccccccCCccCCCCCCCcccCccceeeeeeeeecc
Q 001242 117 QFSLAVVNQIHSKY--SIRKD-----TQHQFNA-----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1116)
Q Consensus 117 ~f~l~L~n~~~~~~--~~~~~-----~~h~F~~-----~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~~ 182 (1116)
+|+|+|+||.++.. ++... ..+.|.. ...+|||.+||++++|. ++|||+||+++|+|.|.|+.+
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 99999999976531 11111 0122422 12379999999999995 489999999999999999765
No 20
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.80 E-value=2e-20 Score=192.44 Aligned_cols=130 Identities=21% Similarity=0.387 Sum_probs=105.0
Q ss_pred CCCcEEEEEEcCccccCC-----C--eeecCcEE--EcceEEEEEEEeCCCC---CCceEEEEEecCCCCCC-CCceEEE
Q 001242 50 PPTMKFTWTIENFSRLNT-----K--KHYSDVFV--VGGYKWRILIFPKGNN---VDHLSMYLDVADSGTLP-YGWSRYA 116 (1116)
Q Consensus 50 ~~~~~~tw~I~nfS~l~~-----~--~~~Sp~F~--vgG~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~-~~W~~~a 116 (1116)
..+++|+|+|+|||.+++ + .+.||+|. +|||+|+|++||+|++ .+|||+||.+.+++..+ .+|++.|
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 468999999999999852 2 38999996 7999999999999974 48999999998765544 6899999
Q ss_pred EEEEEEEeecccceeeeecc-----eeeec----CCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeec
Q 001242 117 QFSLAVVNQIHSKYSIRKDT-----QHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1116)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~~-----~h~F~----~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~ 181 (1116)
+|+|+|+||.+... ..... .+.|. ..+.+|||.+||++++|.++ +|||+||+++|+|.|.|.+
T Consensus 96 ~~~l~ll~q~~~~~-~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 96 KVTLMLLDQNNREH-VIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CEEEEECCTTSSCC-EEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCcc-ceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 99999999987642 22211 23564 24578999999999999763 4999999999999998753
No 21
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.78 E-value=4e-20 Score=194.07 Aligned_cols=129 Identities=20% Similarity=0.366 Sum_probs=106.0
Q ss_pred CCcEEEEEEcCccccC-----CC--eeecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEEecCCCCC-CCCceEEEE
Q 001242 51 PTMKFTWTIENFSRLN-----TK--KHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYAQ 117 (1116)
Q Consensus 51 ~~~~~tw~I~nfS~l~-----~~--~~~Sp~F~vg--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~-~~~W~~~a~ 117 (1116)
..++|+|+|+|||.++ ++ .+.||+|.+| ||.|+|.+||+|++ .+|||+||.+.+++.. ...|++.|+
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 6789999999999985 23 5999999999 99999999999974 4799999999876543 347999999
Q ss_pred EEEEEEeecccceeeeec-----ceeeecC----CCCCCccccccCCccCCCCCCCcccCccceeeeeeeeec
Q 001242 118 FSLAVVNQIHSKYSIRKD-----TQHQFNA----RESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRK 181 (1116)
Q Consensus 118 f~l~L~n~~~~~~~~~~~-----~~h~F~~----~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~ 181 (1116)
|+|+|+||.++..++... ..+.|.. .+.+|||.+||++++|.+ +|||+||+++|+|.|.|..
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 999999998775443322 1256753 246899999999999965 6999999999999998754
No 22
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.76 E-value=2.2e-19 Score=193.48 Aligned_cols=131 Identities=19% Similarity=0.356 Sum_probs=107.1
Q ss_pred CCCcEEEEEEcCccccCC-------CeeecCcEEEc--ceEEEEEEEeCCCC---CCceEEEEEecCCCCC-CCCceEEE
Q 001242 50 PPTMKFTWTIENFSRLNT-------KKHYSDVFVVG--GYKWRILIFPKGNN---VDHLSMYLDVADSGTL-PYGWSRYA 116 (1116)
Q Consensus 50 ~~~~~~tw~I~nfS~l~~-------~~~~Sp~F~vg--G~~W~I~lyP~G~~---~~~lSiyL~~~~~~~~-~~~W~~~a 116 (1116)
...++|+|+|+|||.+++ ..+.||+|.+| ||.|+|.+||+|++ .+|||+||.+.+++.. ...|++.|
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a 152 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQ 152 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEE
Confidence 368999999999998852 27999999999 99999999999974 4799999999876543 34899999
Q ss_pred EEEEEEEeecccceeeeec-----ceeeec----CCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeecc
Q 001242 117 QFSLAVVNQIHSKYSIRKD-----TQHQFN----ARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1116)
Q Consensus 117 ~f~l~L~n~~~~~~~~~~~-----~~h~F~----~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~~ 182 (1116)
+|+|+|+||.++..++... ..+.|. ..+.+|||.+||++++|.+ +|||+||+++|+|.|.|.+.
T Consensus 153 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 153 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp CEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTS
T ss_pred EEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEcccc
Confidence 9999999998775433221 233564 3356899999999999965 89999999999999988653
No 23
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.75 E-value=7.8e-19 Score=198.92 Aligned_cols=127 Identities=29% Similarity=0.472 Sum_probs=107.1
Q ss_pred CCcEEEEEEcCccccC---CCeeecCcEEEcce---EEEEEEEeCCCC---CCceEEEEEecCCCCCCCCceEEEEEEEE
Q 001242 51 PTMKFTWTIENFSRLN---TKKHYSDVFVVGGY---KWRILIFPKGNN---VDHLSMYLDVADSGTLPYGWSRYAQFSLA 121 (1116)
Q Consensus 51 ~~~~~tw~I~nfS~l~---~~~~~Sp~F~vgG~---~W~I~lyP~G~~---~~~lSiyL~~~~~~~~~~~W~~~a~f~l~ 121 (1116)
..++|+|+|+|||.++ ++.+.||+|.+||| +|+|.+||+|++ .+|+|+||.|.+. .+|.+.|+|+|+
T Consensus 5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~ 80 (312)
T 3hqi_A 5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFS 80 (312)
T ss_dssp EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEE
T ss_pred EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEE
Confidence 4689999999999996 67899999999996 999999999963 4899999999854 368999999999
Q ss_pred EEeecccceeeee-cceeeecCCCCCCccccccCCccCCCCCCCcccCccceeeeeeeeecc
Q 001242 122 VVNQIHSKYSIRK-DTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKV 182 (1116)
Q Consensus 122 L~n~~~~~~~~~~-~~~h~F~~~~~dwG~~~Fi~l~~L~~p~~gfL~nDsl~I~~~V~V~~~ 182 (1116)
|+|+++....... ...|+|+. +.+|||.+||+|++|.++++|||+||+++|+|+|.|+++
T Consensus 81 l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 81 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp EECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9999876644332 46788875 468999999999999888889999999999999999865
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=98.68 E-value=1.2e-08 Score=122.71 Aligned_cols=135 Identities=19% Similarity=0.363 Sum_probs=103.8
Q ss_pred CcCCCCCccCCCCcEEEEEEcCccccC---CCeeecCcEEE-cceEEEEEEEeCCCCCCceEEEEEecCCCCCC-CCceE
Q 001242 40 STVENQQVEDPPTMKFTWTIENFSRLN---TKKHYSDVFVV-GGYKWRILIFPKGNNVDHLSMYLDVADSGTLP-YGWSR 114 (1116)
Q Consensus 40 ~~~~~~~~~~~~~~~~tw~I~nfS~l~---~~~~~Sp~F~v-gG~~W~I~lyP~G~~~~~lSiyL~~~~~~~~~-~~W~~ 114 (1116)
-+++|+.+.+..+..+.|+|.||+.+. +..++||+|+- .||.++|.++|+| ..++|+|+.+..++.++ ..|+|
T Consensus 393 IAIDDIs~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~--~~~~~~~~~l~sG~~D~~L~WP~ 470 (592)
T 4gwm_A 393 LSIDDINLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH--VTNAGIYFHLISGANDDQLQWPC 470 (592)
T ss_dssp EEEEEEEEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS--SSEEEEEEEEECCTTGGGSCSSC
T ss_pred EEEeeEEEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC--CceEEEEEEEecCCCCCCccCCC
Confidence 348899999999999999999999974 45899999976 4999999999876 46899999999876543 48999
Q ss_pred E-EEEEEEEEeecccceeeeecceeeec--------------------------------CCCCCCccccccCCccCCCC
Q 001242 115 Y-AQFSLAVVNQIHSKYSIRKDTQHQFN--------------------------------ARESDWGFTSFMPLGDLYDP 161 (1116)
Q Consensus 115 ~-a~f~l~L~n~~~~~~~~~~~~~h~F~--------------------------------~~~~dwG~~~Fi~l~~L~~p 161 (1116)
. -+++++|++|..... .....+..|+ ....+|||+.||++..|.
T Consensus 471 ~~~q~t~~llDQ~pd~~-~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~-- 547 (592)
T 4gwm_A 471 PWQQATMTLLDQNPDIR-QRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK-- 547 (592)
T ss_dssp CSEEEEEEECCCCSSGG-GCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--
T ss_pred CCCEEEEEEeCCCCChH-hcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--
Confidence 5 579999999953321 1111111121 112358999999999995
Q ss_pred CCCcccCccceeeeeeee
Q 001242 162 SRGYLVNDSVVVEAEVAV 179 (1116)
Q Consensus 162 ~~gfL~nDsl~I~~~V~V 179 (1116)
++.||+||++.|.+.|.=
T Consensus 548 ~r~fiK~d~~~i~~~~eD 565 (592)
T 4gwm_A 548 SRDFIKGDDVYILLTVED 565 (592)
T ss_dssp STTSSBTTBEEEEEEEEE
T ss_pred hcCcccCCeEEEEEEEEe
Confidence 478999999999998853
No 25
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.39 E-value=0.011 Score=70.80 Aligned_cols=228 Identities=11% Similarity=0.116 Sum_probs=144.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEeee
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (1116)
...+.+.+.+|+.++.+.||+.+|++|+.+|||.. ++.+.+|..++.... +.+|.++....... ..-.||-|+.
T Consensus 254 ~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~---~~~~~~p~~~i~~~~-~~~L~d~l~~~~~~--~~~~l~YevL 327 (530)
T 2ylm_A 254 GFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKS---QGYRDGPGNPLRHNY-EGTLRDLLQFFKPR--QPKKLYYQQL 327 (530)
T ss_dssp CEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECC---CTTSCSCCSBCCTTC-CSCHHHHSTTSCSS--SCCEEEEEEC
T ss_pred CeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEec---ccccCCCCCccccCC-CCcHHHHhhcccCC--CCCeEEEEEC
Confidence 35678999999999999999999999999999976 234456777776443 46888877432211 1246888875
Q ss_pred cCCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCC--CCcEEEEEEeecCccee
Q 001242 673 FGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDP--DEEIELYEEIKFEPCVM 750 (1116)
Q Consensus 673 ~~~~~~~~~~~~~~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~--dt~l~lyEEik~~p~~~ 750 (1116)
+-+ ... ......+-++ +.++..+.- .=.++|+++.+|++|+..+.+++|+++ ..+|.+||-. -+.+
T Consensus 328 ~ip----l~E-lE~~r~~kv~--w~~~~~~~~--~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~---~~ki 395 (530)
T 2ylm_A 328 KMK----ITD-FENRRSFKCI--WLNSQFREE--EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIV---SYKI 395 (530)
T ss_dssp SSC----HHH-HHSBCCEEEE--EECTTSCEE--EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEE---TTEE
T ss_pred CCC----HHH-HhhCceEEEE--EECCCCceE--EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEE---CCEE
Confidence 321 100 0112223332 336655543 677888999999999999999999985 5779898654 2344
Q ss_pred eccCCcCCccccccCCC--CCEEEEEeCCCCCCcccCCCCCHHHHHHHHhcceEEEEEecCCCC--CCcEEEEEcCCCCH
Q 001242 751 CEHLDKRTSFRLSQIED--GDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPK--EDAFCLELSKQHSY 826 (1116)
Q Consensus 751 ie~i~~~~t~~~~el~~--GDIi~fQ~~~~~~~~~~~~y~~~~~yy~~L~nr~~v~f~~~~~~~--~~~f~l~ls~~~~Y 826 (1116)
....+.+.++. .|.+ .+.|-.+..+.++.. .+.-.+ ..|.|-...++... ..+|.+.+...-++
T Consensus 396 ~ki~~~~~~i~--~i~d~~~~~~rieeip~ee~~----~~~~~~------~li~V~hf~k~~~~~~G~PF~~~v~~gEt~ 463 (530)
T 2ylm_A 396 IGVHQEDELLE--CLSPATSRTFRIEEIPLDQVD----IDKENE------MLVTVAHFHKEVFGTFGIPFLLRIHQGEHF 463 (530)
T ss_dssp EEEECTTSBGG--GSCCCTTCEEEEEECCGGGSS----CCTTTE------EEEEEEEESSSTTCEEEEEEEEEEETTCCH
T ss_pred EEecCCCcccc--cccccccceEEEEECCHHHhc----cCCCCc------EEEEEEEeccCcccccCCCeEEEecCCCcH
Confidence 44455555553 3444 566665544432211 000001 23333222222211 22799999999999
Q ss_pred HHHHHHHHHHhCCCC--CCceEEecc
Q 001242 827 DEVVERVARKIGLDD--PSKIRLTPH 850 (1116)
Q Consensus 827 ~~~a~~va~~l~~~~--p~~lr~~~~ 850 (1116)
.++-+++.++|||.+ -++++|--.
T Consensus 464 ~~~k~Rl~~rlgv~~keF~K~Kfa~v 489 (530)
T 2ylm_A 464 REVMKRIQSLLDIQEKEFEKFKFAIV 489 (530)
T ss_dssp HHHHHHHHHHHCCCHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhCCCHhhhhhEEEEEE
Confidence 999999999999853 357787653
No 26
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.18 E-value=0.037 Score=57.18 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=101.3
Q ss_pred ccCCCCcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCcccccchhhhh
Q 001242 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKS 266 (1116)
Q Consensus 187 ~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~s 266 (1116)
.|+.....|.+=|+=.-|.||+||++=+|=+.... ++.++.++..++. ..|...
T Consensus 4 ~f~~~~~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----------------------~~~aw~~f~~Gd~----~~fV~~ 57 (211)
T 3mp2_A 4 PFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFF----------------------NNEAWEKFKKGDV----MDFVNL 57 (211)
T ss_dssp CCCEEEETTEEEECCCTTCHHHHHHHHHHTTCTTC----------------------CCHHHHHHTTTCC----HHHHHH
T ss_pred CCcceeECCEEEEEccCCCcHHHHHHHHHHhcChh----------------------HHHHHHHHhCCCh----HHHHHH
Confidence 45555666777777778999999998776444332 3444444443332 222211
Q ss_pred c-ccCcccccccccHHHHHHHHHHHHHHhhcCCccccccccccceEEeeeEEeeceeeecceeeeeeeeeeeccCCCCHH
Q 001242 267 F-GWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVY 345 (1116)
Q Consensus 267 ~-~~~~~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~v~~~~sL~ 345 (1116)
+ .......++-.||++++..|+..+ -...+...+.|. |+. +.+.+...-..+....
T Consensus 58 ~Ya~~~~~~G~~gDa~~~L~~Ll~~~----------------~~a~~v~~~~C~-Cg~---~~~~~~G~v~~~~~~~--- 114 (211)
T 3mp2_A 58 CYAATTLARGHSGDAEYLLELMLNDY----------------STAKIVLAAKCG-CGE---KEIVLERAVFKLTPLK--- 114 (211)
T ss_dssp HHHHHTCCTTSCCCHHHHHHHHHTTC----------------CCEEEEEEEEET-TEE---EEEEEEESEEESCCBS---
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHhh----------------ccceEEEEEEEc-CCC---ceEEEeeeEEEEEeee---
Confidence 1 001234457789999999998321 123455677887 876 3333333333332211
Q ss_pred HHHhhcceeEEecCCCcc-cccccCceeeeeeeEeecCCCeEEEEEeeEEeecccCeeeeccceEecCccccCCcccCCC
Q 001242 346 ASFDKYVEVERLEGDNKY-HAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKY 424 (1116)
Q Consensus 346 e~L~~~~~~E~l~g~n~y-~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~ 424 (1116)
.+ -.| .|..|+..... ++.+.+-.++|- ++. -|..++.+ +..
T Consensus 115 ------------~~-~~~g~C~~c~~~~~~---~v~~v~Gt~i~~----------------~~~--~~~~v~~~---~~~ 157 (211)
T 3mp2_A 115 ------------ES-FNYGVCGDCMQVNTC---RFLSVEGSGVFV----------------HDI--LSKQTPEA---MFV 157 (211)
T ss_dssp ------------SC-EEEEECTTTCCEEEE---EEEEEEEEEEEE----------------EEE--ECSCCCGG---GBS
T ss_pred ------------cC-CCceECCCCCceeEE---EEEEeeeeEEEE----------------cCC--CCcccccc---cce
Confidence 00 124 68788643221 122222222211 111 13233331 111
Q ss_pred CCCCcCcCccccEEEEEEEEeeccCCCceEEEEEecCCCCCEEEEeCceeeEec
Q 001242 425 LSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478 (1116)
Q Consensus 425 l~~~~~~~~~~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~v~ 478 (1116)
+. + .+-++.+|+.++|||+.+.... + +.+|-..+.+++
T Consensus 158 v~-------~-----~~~~vF~G~~~~GHY~~~~~~~--~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 158 VK-------P-----VMHAVYTGTTQNGHYMVDDIEH--G--YCVDGMGIKPLK 195 (211)
T ss_dssp SC-------C-----SEEEEEESCTTTCEEEEEETTT--T--EEEETTEEECCC
T ss_pred ee-------c-----eeEEEEEcCCCCceEEEEeccc--c--eEEeCCceeEcc
Confidence 11 1 2335669999999999997763 3 899999998885
No 27
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.89 E-value=0.084 Score=53.43 Aligned_cols=133 Identities=17% Similarity=0.307 Sum_probs=93.1
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEeeec
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 673 (1116)
.+++|..++|+.+|+++|++..|++++++||..- ++ .|.+ +.||.+.. + . ..-.++|-...
T Consensus 33 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~----g~------~L~d---~~tL~~~~-i----~-~~~~l~l~~~~ 93 (172)
T 3u30_A 33 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA----GK------QLED---GRTLSDYN-I----Q-KESTLHLVLRL 93 (172)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET----TE------ECCT---TCBTGGGT-C----C-TTCEEEEEECC
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC----Cc------cccc---cCCHhHcC-C----c-ccceeeeeecc
Confidence 3578888999999999999999999999998742 11 2322 34555432 1 1 12345554321
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeecc
Q 001242 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (1116)
Q Consensus 674 ~~~~~~~~~~~~~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~ 753 (1116)
...+.+|+|..+-. ++ .+-|..+++|.+|...|.++.|+|++..-.+|. + ..
T Consensus 94 -------------~gg~~i~Vk~~~g~--~~----~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g---~~ 145 (172)
T 3u30_A 94 -------------RGGMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQ 145 (172)
T ss_dssp -------------CCCEEEEEEESSCC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EE
T ss_pred -------------cccccceeecccCc--ce----eEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC------C---cc
Confidence 12368888876543 22 235789999999999999999999887665552 2 24
Q ss_pred CCcCCccccccCCCCCEEEE
Q 001242 754 LDKRTSFRLSQIEDGDIICF 773 (1116)
Q Consensus 754 i~~~~t~~~~el~~GDIi~f 773 (1116)
++...|+....+++|+.|..
T Consensus 146 L~D~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 146 LEDGRTLSDYNIQKESTLHL 165 (172)
T ss_dssp CCTTSBSGGGTCCTTCEEEE
T ss_pred CCCCCcHHHhCCCCCCEEEE
Confidence 56788999999999998865
No 28
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.87 E-value=0.085 Score=51.90 Aligned_cols=136 Identities=17% Similarity=0.292 Sum_probs=95.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEeeec
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 673 (1116)
.++++..++|+.+|++.|++..|+|++++||..- + ..|.+ +.|+.+.. + . ..-.+++....
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~-----g-----~~L~d---~~tL~~~~-i----~-~~~~l~l~~~~ 73 (152)
T 3b08_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA-----G-----KQLED---GRTLSDYN-I----Q-KESTLHLVLRL 73 (152)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET-----T-----EECCT---TSBTGGGT-C----C-TTCEEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC-----C-----eECcC---cccHHHhc-c----C-CCCeeEEEeec
Confidence 3567788899999999999999999999998752 1 12322 34555432 1 1 13356665421
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeecc
Q 001242 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (1116)
Q Consensus 674 ~~~~~~~~~~~~~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~ 753 (1116)
...+.||+|..+-. ++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..
T Consensus 74 -------------~~~~~i~Vk~~~g~--~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~------g---~~ 125 (152)
T 3b08_A 74 -------------RGGMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQ 125 (152)
T ss_dssp -------------TTCEEEEEEESSSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EE
T ss_pred -------------ccccceeeeecCCC--EE----EEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC------C---EE
Confidence 12367889877642 22 345789999999999999999999887665552 2 24
Q ss_pred CCcCCccccccCCCCCEEEEEeC
Q 001242 754 LDKRTSFRLSQIEDGDIICFQKS 776 (1116)
Q Consensus 754 i~~~~t~~~~el~~GDIi~fQ~~ 776 (1116)
++.+.|+....+.+|+.|..-..
T Consensus 126 L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 126 LEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CCCCCCHHHcCCCCCCEEEEEEe
Confidence 56788999999999999876543
No 29
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=95.79 E-value=0.062 Score=53.61 Aligned_cols=138 Identities=10% Similarity=0.129 Sum_probs=95.1
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEeeec
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEF 673 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 673 (1116)
.++.+..++|+.+|++.|++..|+|++++||..+. ++ ..|.+ +.||.+.. + . ..-.+++-...
T Consensus 15 ~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~---~g-----~~L~d---~~tL~~y~-i----~-~~~~l~l~~~~ 77 (159)
T 3rt3_B 15 FQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP---SG-----VALQD---RVPLASQG-L----G-PGSTVLLVVDK 77 (159)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET---TC-----CBCCT---TSCGGGGT-C----C-TTCEEEEEECC
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC---CC-----CCCCC---CCCHHHcC-C----C-CCCEEEEEccC
Confidence 45678888999999999999999999999987431 11 12322 34555432 1 1 13345554421
Q ss_pred CCCCCCCCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeecc
Q 001242 674 GPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH 753 (1116)
Q Consensus 674 ~~~~~~~~~~~~~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~ 753 (1116)
....+-||+|..+-. ++. +-|+.+++|.+|...|.+..|+|++..-.+|. + ..
T Consensus 78 ------------~~~~m~i~vk~~~g~--~~~----~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------G---~~ 130 (159)
T 3rt3_B 78 ------------SDEPLSILVRNNKGR--SST----YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KP 130 (159)
T ss_dssp ------------CCCCEEEEEECTTSC--EEE----EEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EE
T ss_pred ------------CCCcEEEEEECCCCC--EEE----EEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC------C---ee
Confidence 112377888865432 322 46789999999999999999999887655552 2 34
Q ss_pred CCcCCccccccCCCCCEEEEEe
Q 001242 754 LDKRTSFRLSQIEDGDIICFQK 775 (1116)
Q Consensus 754 i~~~~t~~~~el~~GDIi~fQ~ 775 (1116)
++...|+....+++|+.|-.-.
T Consensus 131 L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 131 LEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCTTSBGGGGTCCTTCEEEEEE
T ss_pred cCCCCCHHHcCCCCCCEEEEEE
Confidence 6678899999999999987654
No 30
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.73 E-value=0.17 Score=51.19 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=78.5
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCcccccccc--cccceeE
Q 001242 901 NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENIN--DQYWTLR 978 (1116)
Q Consensus 901 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~i~~~ki~~~~~~~~~i~~i~--~~~~~~~ 978 (1116)
.|+|+.-..+. +.+.+-|+.+.||.+|.++++.+.+++.+ +.||. ++| +.+..+..+.+.+ + ..++.
T Consensus 20 ~m~i~Vk~~~g---~~~~l~v~~~~tV~~lK~~I~~~~gip~~--~QrL~--~~g---~~L~d~~tL~~~~i~~-~~~l~ 88 (172)
T 3u30_A 20 HMQIFVKTLTG---KTITLEVEPSDTIENVKAKIQDKEGIPPD--QQRLI--FAG---KQLEDGRTLSDYNIQK-ESTLH 88 (172)
T ss_dssp CEEEEEEETTT---EEEEEEECTTCBHHHHHHHHHHHHCCCGG--GEEEE--ETT---EECCTTCBTGGGTCCT-TCEEE
T ss_pred cEEEEEEeCCC---CEEEEEECCCCcHHHHHHHHHHHHCcChH--HEEEE--ECC---ccccccCCHhHcCCcc-cceee
Confidence 35555543332 34678899999999999999999998743 45554 466 4567777777642 2 23443
Q ss_pred eeecchhhccCCCCCeEEEEEEeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001242 979 AEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1116)
Q Consensus 979 ~E~iP~ee~~~~~~~~li~V~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~ 1046 (1116)
+-. . ..+.+.|.| |... |-.|.+.+.+..|+.++|++|+.+.|++...
T Consensus 89 l~~-~------~~gg~~i~V----k~~~---------g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 136 (172)
T 3u30_A 89 LVL-R------LRGGMQIFV----KTLT---------GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 136 (172)
T ss_dssp EEE-C------CCCCEEEEE----EESS---------CCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred eee-c------cccccccee----eccc---------CcceeEEecCCCCHHHHHHHHHHHhCCCcee
Confidence 311 1 123455544 3333 8889999999999999999999999998754
No 31
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.75 E-value=0.61 Score=45.60 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCccEEEEEEeccEEEEecCCccccccc--ccccceeEeeecchhhccCCCCC
Q 001242 916 IHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENI--NDQYWTLRAEEIPEEEKNLGPND 993 (1116)
Q Consensus 916 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~i~~~ki~~~~~~~~~i~~i--~~~~~~~~~E~iP~ee~~~~~~~ 993 (1116)
.+.+-++.+.||.||.+++..+.+++.+ ..||. ++|+ .+..+..+.+. .+ ..++.+..-+ .+.
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~--~q~L~--~~g~---~L~d~~tL~~~~i~~-~~~l~l~~~~-------~~~ 76 (152)
T 3b08_A 12 TITLEVEPSDTIENVKAKIQDKEGIPPD--QQRLI--FAGK---QLEDGRTLSDYNIQK-ESTLHLVLRL-------RGG 76 (152)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGG--GEEEE--ETTE---ECCTTSBTGGGTCCT-TCEEEEEECC-------TTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChH--HeEEE--ECCe---ECcCcccHHHhccCC-CCeeEEEeec-------ccc
Confidence 3577899999999999999999998743 45554 3565 46666666654 22 2344442211 234
Q ss_pred eEEEEEEeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCcc
Q 001242 994 RLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTD 1067 (1116)
Q Consensus 994 ~li~V~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~~ 1067 (1116)
+.|.|- ... |-.|.+.+.+..|+.++|++|+++.|++.. +.++ +..+ +.|+|+.
T Consensus 77 ~~i~Vk----~~~---------g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---~qrL--~~~g--~~L~d~~ 130 (152)
T 3b08_A 77 MQIFVK----TLT---------GKTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL--IFAG--KQLEDGR 130 (152)
T ss_dssp EEEEEE----ESS---------SCEEEEEECTTCBHHHHHHHHHHHHCCCGG---GEEE--EETT--EECCTTS
T ss_pred cceeee----ecC---------CCEEEEEeCCCCcHHHHHHHHHHHhCcChh---hEEE--EECC--EECCCCC
Confidence 455442 222 888999999999999999999999999854 3343 3333 3465544
No 32
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=93.49 E-value=0.66 Score=51.00 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=49.0
Q ss_pred ccCCCCcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCcccccchhhhh
Q 001242 187 SYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKS 266 (1116)
Q Consensus 187 ~~~s~~~~g~~GL~N~GnTCY~NSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~~~~~Lq~Lf~~l~~s~~~v~~~~l~~s 266 (1116)
.|+.....|++=|+=.-|.||+||++=+|=+... .- -.-+|++++.++..++..--..-+..+
T Consensus 93 ~w~~~~~~G~~vLkq~dNNCwVNaa~l~LQ~~~~--------~F---------~~~~l~~aw~~f~~Gd~~~FVa~~Ya~ 155 (315)
T 2fe8_A 93 KWKFPQVGGLTSIKWADNNCYLSSVLLALQQLEV--------KF---------NAPALQEAYYRARAGDAANFCALILAY 155 (315)
T ss_dssp TSCCCEETTEECCCCCTTTHHHHHHHHHHHTSCC--------CB---------SSHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCceEEECCEEEEeecCCccHHHHHHHHHHhcCC--------cc---------CCHHHHHHHHHHhCCChHHHHHHHHHh
Confidence 3445556677777777899999999776633321 00 013677777776665432111111111
Q ss_pred cccCcccccccccHHHHHHHHHH
Q 001242 267 FGWDTYDSFMQHDVQELNRVLCE 289 (1116)
Q Consensus 267 ~~~~~~~~~~QqDa~Efl~~Lld 289 (1116)
.....++-.||++++..|+.
T Consensus 156 ---~~~~~G~~gDa~~~L~~Ll~ 175 (315)
T 2fe8_A 156 ---SNKTVGELGDVRETMTHLLQ 175 (315)
T ss_dssp ---TTCCTTSCCCHHHHHHHHHT
T ss_pred ---cCCCCCCCccHHHHHHHHHh
Confidence 12335678899999999943
No 33
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=93.41 E-value=1.5 Score=43.37 Aligned_cols=119 Identities=14% Similarity=0.092 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCccEEEEEEe-ccEEEEecCCccccccc--ccccceeEeeecchhhccCCCC
Q 001242 916 IHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVF-YHKIYKIFAPNEKIENI--NDQYWTLRAEEIPEEEKNLGPN 992 (1116)
Q Consensus 916 ~~~~~v~k~~tv~dll~~l~~~~~~~~~~~~lrl~~i~-~~ki~~~~~~~~~i~~i--~~~~~~~~~E~iP~ee~~~~~~ 992 (1116)
.+.+-|+.+.||.+|.++++.+.+++.+ +.||.- + +| +.+..+..+.+. .+ ..++.+-.-+ .++
T Consensus 14 ~~~l~v~~~~tV~~lK~~I~~~~gip~~--~QrL~~-~~~g---~~L~d~~tL~~y~i~~-~~~l~l~~~~------~~~ 80 (159)
T 3rt3_B 14 EFQVSLSSSMSVSELKAQITQKIGVHAF--QQRLAV-HPSG---VALQDRVPLASQGLGP-GSTVLLVVDK------SDE 80 (159)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCCGG--GEEEEE-ETTC---CBCCTTSCGGGGTCCT-TCEEEEEECC------CCC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCHH--HEEEEE-cCCC---CCCCCCCCHHHcCCCC-CCEEEEEccC------CCC
Confidence 4678999999999999999999998743 345542 3 45 346777777663 22 2344332210 123
Q ss_pred CeEEEEEEeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCcc
Q 001242 993 DRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTD 1067 (1116)
Q Consensus 993 ~~li~V~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~~ 1067 (1116)
.+-|.| |... |--|.+.|.+.+|+.++|++|+++.|+|... .++ +..+ +-|+|+.
T Consensus 81 ~m~i~v----k~~~---------g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~---q~L--~~~G--~~L~d~~ 135 (159)
T 3rt3_B 81 PLSILV----RNNK---------GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL---FWL--TFEG--KPLEDQL 135 (159)
T ss_dssp CEEEEE----ECTT---------SCEEEEEECTTSBHHHHHHHHHHHHTCCGGG---EEE--EETT--EECCTTS
T ss_pred cEEEEE----ECCC---------CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHH---EEE--EECC--eecCCCC
Confidence 344444 3333 7788899999999999999999999998643 333 3333 4466654
No 34
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=88.79 E-value=0.88 Score=41.08 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...|.|++|-.|- ..+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....+++
T Consensus 5 ~~~i~ikVk~~~g--~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~me 69 (94)
T 2io1_B 5 NDHINLKVAGQDG--SVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 69 (94)
T ss_dssp -CEEEEEEECTTS--CEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCC
T ss_pred CCeEEEEEECCCC--CEE----EEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 3457777775443 333 567899999999999999999999864333332 2 457888999999999
Q ss_pred CCCEEEEEeC
Q 001242 767 DGDIICFQKS 776 (1116)
Q Consensus 767 ~GDIi~fQ~~ 776 (1116)
+||+|-+-..
T Consensus 70 dgD~Idv~~~ 79 (94)
T 2io1_B 70 DEDTIDVFQQ 79 (94)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998866544
No 35
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=88.62 E-value=0.86 Score=39.16 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=48.3
Q ss_pred EEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEE
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1116)
.+-|+.+.+|+.|+..-|++-|+|+++.|.|-= + + +.++++.|+...|+.|||-|=.
T Consensus 23 ~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF----D-G---dRLdp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 23 RLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF----E-G---EWLDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE----T-T---EECCTTSBGGGSSCCTTCEEEE
T ss_pred EEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE----c-C---cccCccCChhhhCCcCCceeee
Confidence 345899999999999999999999998886621 1 3 6799999999999999998744
No 36
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=84.53 E-value=2.3 Score=38.02 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=55.2
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..|.|++|-. ....+ .+-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....++.+
T Consensus 4 ~~i~ikVk~~--~g~~v----~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~med 68 (91)
T 2io0_B 4 DHINLKVAGQ--DGSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMED 68 (91)
T ss_dssp CEEEEEEECT--TSCEE----EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET------T---EECCTTCCTTTTTCCT
T ss_pred CeEEEEEECC--CCCEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 3466666643 33333 567899999999999999999999865433342 3 4678889999999999
Q ss_pred CCEEEEEeC
Q 001242 768 GDIICFQKS 776 (1116)
Q Consensus 768 GDIi~fQ~~ 776 (1116)
||+|=+-..
T Consensus 69 gD~Idv~~~ 77 (91)
T 2io0_B 69 EDTIDVFQQ 77 (91)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998876554
No 37
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=84.41 E-value=1.9 Score=45.15 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=50.0
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCc-ceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEee
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 671 (1116)
..+..+.+..|+.+|++.+++.++++.+ .+|||.+....+.. .|. +.+.||+++. -.....|.+|+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~-----~L~--~~~~tl~~~~------l~~~Q~illE~ 207 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFE-----PLN--KPDSTIQDAG------LYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEE-----ECC--CTTSBHHHHT------CCTTCEEEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCee-----ecC--CCCCCHHHhC------CCCCCEEEEEE
Confidence 3467889999999999999999999997 69999986533221 232 2357888865 22356888998
Q ss_pred ec
Q 001242 672 EF 673 (1116)
Q Consensus 672 ~~ 673 (1116)
..
T Consensus 208 r~ 209 (217)
T 4a3p_A 208 KN 209 (217)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 38
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=84.20 E-value=2.5 Score=39.49 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=53.2
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..|-|.++ +.....+ ++-|.++.+++.|+...+++.|++.++---+|. + +.|.++.|....++.+
T Consensus 39 ~~I~LKV~--~qdg~ev----~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD------G---~rI~~~~TP~dL~MED 103 (115)
T 3kyd_D 39 EYIKLKVI--GQDSSEI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGMEE 103 (115)
T ss_dssp CEEEEEEE--CTTSCEE----EEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET------T---EECCTTCCTTTTTCCT
T ss_pred CeEEEEEE--cCCCCEE----EEEEccCChHHHHHHHHHHHhCCChhhEEEEEC------C---eECCCCCCHHHcCCCC
Confidence 34555544 4444443 678999999999999999999998765444443 2 4677899999999999
Q ss_pred CCEEEE
Q 001242 768 GDIICF 773 (1116)
Q Consensus 768 GDIi~f 773 (1116)
||+|-+
T Consensus 104 gD~IdV 109 (115)
T 3kyd_D 104 EDVIEV 109 (115)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 998854
No 39
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=83.96 E-value=1.2 Score=38.01 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=46.0
Q ss_pred EEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEE
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1116)
++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....++.+||+|=+
T Consensus 15 ~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 15 QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET------T---EECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCCCCCEEEE
Confidence 567899999999999999999999875444442 3 4678889999999999998843
No 40
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=83.65 E-value=1.7 Score=40.47 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=58.1
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccC
Q 001242 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1116)
Q Consensus 686 ~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1116)
....|.|++|--|-. .+ .+-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....++
T Consensus 23 ~~~~I~IkVk~~~g~--~i----~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd------G---~~L~~~~Tp~dl~m 87 (110)
T 2k8h_A 23 ETALVAVKVVNADGA--EM----FFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD------G---TPIDETKTPEELGM 87 (110)
T ss_dssp CCCCEEEEEEETTSC--CE----EEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS------S---CBCCSSSHHHHHHC
T ss_pred CCCeEEEEEECCCCC--EE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCC
Confidence 445688888754433 33 677899999999999999999999885433332 2 56888999999999
Q ss_pred CCCCEEEEEeC
Q 001242 766 EDGDIICFQKS 776 (1116)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1116)
.+||+|=+-..
T Consensus 88 EDgD~Idv~~~ 98 (110)
T 2k8h_A 88 EDDDVIDAMVE 98 (110)
T ss_dssp SSEEEEEEECC
T ss_pred CCCCEEEEEEc
Confidence 99998876554
No 41
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=83.33 E-value=1.2 Score=41.07 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=32.0
Q ss_pred CceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 592 KVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
...++.|..++|+.+|+++|++..|+|++++| |.+.
T Consensus 37 ~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~g 72 (105)
T 4dbg_A 37 VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIG 72 (105)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEET
T ss_pred ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-Eecc
Confidence 35678899999999999999999999999999 7764
No 42
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=83.20 E-value=3.9 Score=37.71 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=56.1
Q ss_pred CCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCcccccc
Q 001242 685 KSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQ 764 (1116)
Q Consensus 685 ~~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~e 764 (1116)
.....|.|++|- + ...+ .+-|.++++++.|+...+++.|++++.--.+|. + +.|.++.|....+
T Consensus 27 ~~~~~I~IkV~~-~--g~~i----~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd------G---~rl~~~~Tp~dl~ 90 (106)
T 2eke_C 27 KPETHINLKVSD-G--SSEI----FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLD 90 (106)
T ss_dssp CCCSEEEEEEEC-S--SCEE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTT
T ss_pred CCCCeEEEEEec-C--CcEE----EEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC------C---eEcCCCCCHHHcC
Confidence 345668888886 4 3332 567899999999999999999999874333332 2 4577889999999
Q ss_pred CCCCCEEEEEe
Q 001242 765 IEDGDIICFQK 775 (1116)
Q Consensus 765 l~~GDIi~fQ~ 775 (1116)
+.+||+|-+-.
T Consensus 91 medgD~Idv~~ 101 (106)
T 2eke_C 91 MEDNDIIEAHR 101 (106)
T ss_dssp CCTTEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 99999886543
No 43
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=82.30 E-value=2.5 Score=38.02 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...|.|++|- .....+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....++.
T Consensus 15 ~~~i~ikV~~--~~g~~i----~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~dl~me 79 (93)
T 2d07_B 15 NDHINLKVAG--QDGSVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 79 (93)
T ss_dssp CCEEEEEEEC--TTSCEE----EEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCTTTTTCC
T ss_pred CCeEEEEEEC--CCCCEE----EEEEccCCHHHHHHHHHHHHhCCCccceEEEEC------C---EEcCCCCCHHHcCCC
Confidence 3457777764 333343 678999999999999999999999874333332 2 457888999999999
Q ss_pred CCCEEEEE
Q 001242 767 DGDIICFQ 774 (1116)
Q Consensus 767 ~GDIi~fQ 774 (1116)
+||+|=+-
T Consensus 80 dgD~Idv~ 87 (93)
T 2d07_B 80 DEDTIDVF 87 (93)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 99988554
No 44
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=82.16 E-value=1.6 Score=39.18 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=31.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~ 627 (1116)
.++.+..++|+.+|+++|++..|+|++++||+.+
T Consensus 34 ~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 34 VRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 4678889999999999999999999999999874
No 45
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=82.01 E-value=2.8 Score=36.69 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=56.9
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...+-||+|..+-. ++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.
T Consensus 10 ~~~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~ 74 (88)
T 3dbh_I 10 GGSMLIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKIL 74 (88)
T ss_dssp CCCEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EECCTTSBGGGGTCC
T ss_pred CCcEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC------C---eECCCCCcHHHcCCC
Confidence 34588999987643 22 356889999999999999999999887665652 2 246678899999999
Q ss_pred CCCEEEEE
Q 001242 767 DGDIICFQ 774 (1116)
Q Consensus 767 ~GDIi~fQ 774 (1116)
+|+.|..-
T Consensus 75 ~~~~i~l~ 82 (88)
T 3dbh_I 75 GGSVLHLV 82 (88)
T ss_dssp TTCEEEEC
T ss_pred CCCEEEEE
Confidence 99998764
No 46
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=81.58 E-value=1.4 Score=38.35 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=53.1
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..|.|++|--|-. +.+ ++-|.++.+++.|+...+++.|++++.--.+|. + +.|.++.|....++.+
T Consensus 6 ~~i~ikV~~~~g~-~~i----~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd------G---~~l~~~~Tp~~l~med 71 (79)
T 3a4r_A 6 QELRLRVQGKEKH-QML----EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD------G---TKLSGKELPADLGLES 71 (79)
T ss_dssp CCEEEEEECSSTT-CEE----EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET------T---EECCSCCCHHHHTCCT
T ss_pred CEEEEEEEeCCCC-EEE----EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 4466666644432 122 467899999999999999999999885333332 2 4678889999999999
Q ss_pred CCEEEE
Q 001242 768 GDIICF 773 (1116)
Q Consensus 768 GDIi~f 773 (1116)
||+|=+
T Consensus 72 gD~Idv 77 (79)
T 3a4r_A 72 GDLIEV 77 (79)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 999854
No 47
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=81.24 E-value=15 Score=32.87 Aligned_cols=81 Identities=10% Similarity=-0.071 Sum_probs=59.8
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeecc-CCcCCcccccc
Q 001242 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH-LDKRTSFRLSQ 764 (1116)
Q Consensus 686 ~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~-i~~~~t~~~~e 764 (1116)
..+.|-|+++.-....+. -.+-++.+.+|++|...|..+.|+|++..-.+|.. ++..+.. .+...|+....
T Consensus 12 ~~~~v~l~It~s~~~~~~----~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~----~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVA----FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK----GDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCCEEEEEEEESSCSCEE----EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE----TTEEEEECCCTTSBHHHHC
T ss_pred CCCeEEEEEEECCCCceE----EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec----CCcccceeCCCCCCHhHCC
Confidence 456688999873332222 34668899999999999999999999988777764 1212233 47788999999
Q ss_pred CCCCCEEEEE
Q 001242 765 IEDGDIICFQ 774 (1116)
Q Consensus 765 l~~GDIi~fQ 774 (1116)
|++|+.|...
T Consensus 84 i~~gstihlv 93 (95)
T 2kjr_A 84 NSDGLRLHVV 93 (95)
T ss_dssp CSSSCEEEEE
T ss_pred cCCCCEEEEE
Confidence 9999998764
No 48
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=81.09 E-value=3.5 Score=36.54 Aligned_cols=73 Identities=12% Similarity=0.278 Sum_probs=56.9
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++.+.|+....|.
T Consensus 15 ~~~m~i~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~ 79 (91)
T 3v6c_B 15 RGSMQIFVNTLTGT--HI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQ 79 (91)
T ss_dssp CCSEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBTGGGTCC
T ss_pred CCeEEEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC------C---eECCCcCcHHHCCCC
Confidence 45589999987643 22 356889999999999999999999887766652 2 236678899999999
Q ss_pred CCCEEEEE
Q 001242 767 DGDIICFQ 774 (1116)
Q Consensus 767 ~GDIi~fQ 774 (1116)
+|+.|..-
T Consensus 80 ~g~~i~l~ 87 (91)
T 3v6c_B 80 KESTLHLV 87 (91)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99988754
No 49
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=80.88 E-value=3 Score=38.30 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=56.6
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...|.|++|--|- ..+ ++-|.++.+++.|+...+++.|+|++.--.+|. + +.|.++.|....++.
T Consensus 22 ~~~I~IkVk~~~g--~~i----~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd------G---~~l~~~~Tp~dl~me 86 (104)
T 1wz0_A 22 NDHINLKVAGQDG--SVV----QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD------G---QPINETDTPAQLEME 86 (104)
T ss_dssp SCCEEEEEECSSS--CEE----EEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS------S---SBCCTTSCTTTTTCC
T ss_pred CCeEEEEEECCCC--CEE----EEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC------C---EEcCCCCCHHHcCCC
Confidence 4567888775443 333 677999999999999999999999874433332 2 568889999999999
Q ss_pred CCCEEEEEe
Q 001242 767 DGDIICFQK 775 (1116)
Q Consensus 767 ~GDIi~fQ~ 775 (1116)
+||+|-+-.
T Consensus 87 dgD~Idv~~ 95 (104)
T 1wz0_A 87 DEDTIDVFQ 95 (104)
T ss_dssp TTEEEEECC
T ss_pred CCCEEEEEE
Confidence 999886643
No 50
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=80.63 E-value=2.4 Score=38.05 Aligned_cols=70 Identities=13% Similarity=0.026 Sum_probs=53.3
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..|-||+|...-.+. .+-|..+++|.+|...|.++.|+|++.....|. + ..++...|+...+|++
T Consensus 20 ~mIqI~Vk~~~Gkk~------~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~------G---k~LkD~~TL~dY~I~d 84 (93)
T 3plu_A 20 HMIEVVVNDRLGKKV------RVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG------G---SVLKDHISLEDYEVHD 84 (93)
T ss_dssp CEEEEEEECTTSCEE------EEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBTGGGTCCT
T ss_pred ceEEEEEECCCCCEE------EEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC------C---EEccCcCCHHHcCCCC
Confidence 357888886543322 245788999999999999999999987655442 2 3478889999999999
Q ss_pred CCEEE
Q 001242 768 GDIIC 772 (1116)
Q Consensus 768 GDIi~ 772 (1116)
|+.|-
T Consensus 85 gstLh 89 (93)
T 3plu_A 85 QTNLE 89 (93)
T ss_dssp TCEEE
T ss_pred CCEEE
Confidence 99873
No 51
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.62 E-value=5.8 Score=35.65 Aligned_cols=67 Identities=19% Similarity=0.168 Sum_probs=51.4
Q ss_pred EEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEEeCC
Q 001242 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (1116)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (1116)
.-++.+.+|++|...|.++.|.|+...-..|..-. .|...++.-+...++...-+++||.|.++...
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~-~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK-MPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTT-SCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCC-CCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 45789999999999999999999987755555211 23333345577889999999999999998643
No 52
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=79.54 E-value=2 Score=36.93 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=53.6
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-||+|.-+-. ++ .+-|..+++|++|...+.+..|+|++..-.+|. + ..++.+.|+....+.+||
T Consensus 4 m~i~vk~~~g~--~~----~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~------G---~~L~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 4 IKLKVIGQDSS--EI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGMEEED 68 (79)
T ss_dssp EEEEEECTTCC--EE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTCCTTE
T ss_pred EEEEEECCCCC--EE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEeCCCCCHHHcCCCCCC
Confidence 56777755432 32 356789999999999999999999885544442 2 346778899999999999
Q ss_pred EEEEEe
Q 001242 770 IICFQK 775 (1116)
Q Consensus 770 Ii~fQ~ 775 (1116)
.|..-.
T Consensus 69 ~i~l~~ 74 (79)
T 2uyz_B 69 VIEVYQ 74 (79)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987654
No 53
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=79.19 E-value=2.3 Score=38.37 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=31.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
.++++..++|+.+|+++|....|+|++++||....
T Consensus 30 ~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 30 FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK 64 (95)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE
T ss_pred EEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 46789999999999999999999999999998753
No 54
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=78.51 E-value=2.8 Score=44.34 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=48.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCc-ceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEeee
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (1116)
.+.++.+..|+.+|++.+++.++++++ .+|||.+....+.. .|. +.+.||+++. -.....|.+|+.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~-----~L~--~~~~tl~d~~------L~~~Q~illE~r 220 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYE-----QLS--KLDNTIQDAG------LYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCE-----ECC--CTTSBTTTTT------CCTTEEEEEEEC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHh-----hhc--CCCCCHHHhC------CCCCCEEEEEEe
Confidence 356788999999999999999999997 69999975433221 222 2346777653 224678999986
Q ss_pred cC
Q 001242 673 FG 674 (1116)
Q Consensus 673 ~~ 674 (1116)
..
T Consensus 221 ~~ 222 (231)
T 3jyu_A 221 NE 222 (231)
T ss_dssp CT
T ss_pred cC
Confidence 43
No 55
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=78.42 E-value=2.5 Score=38.12 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=56.8
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..+....|+....|+
T Consensus 19 ~~~m~I~Vk~~~g~--~~----~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~------G---k~L~d~~tl~dy~i~ 83 (97)
T 1wyw_B 19 GEYIKLKVIGQDSS--EI----HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE------G---QRIADNHTPKELGME 83 (97)
T ss_dssp CCEEEEEEECTTCC--EE----EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTCCHHHHTCC
T ss_pred CCcEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------C---eEcCCCCCHHHCCCC
Confidence 45588888865543 32 356889999999999999999999886555552 2 346678899999999
Q ss_pred CCCEEEEEe
Q 001242 767 DGDIICFQK 775 (1116)
Q Consensus 767 ~GDIi~fQ~ 775 (1116)
+||+|..-.
T Consensus 84 ~g~~I~l~~ 92 (97)
T 1wyw_B 84 EEDVIEVYQ 92 (97)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999987654
No 56
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=78.39 E-value=3 Score=36.11 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=55.4
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-||+|..+-.+ + .+-|+.+++|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+
T Consensus 4 m~i~vk~~~g~~--~----~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~------g---~~L~d~~tL~~~~i~~~~ 68 (85)
T 3n3k_B 4 MRIVVKTLMGRT--I----ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIHNHS 68 (85)
T ss_dssp CEEEEECGGGCE--E----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------B---EECCTTCBTTTTTCCTTC
T ss_pred EEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC------C---eECCCCCCHHHCCCCCCC
Confidence 568888776432 1 245788999999999999999999987766662 1 246677899999999999
Q ss_pred EEEEEeC
Q 001242 770 IICFQKS 776 (1116)
Q Consensus 770 Ii~fQ~~ 776 (1116)
.|..-..
T Consensus 69 ~i~l~~r 75 (85)
T 3n3k_B 69 ALYLLLK 75 (85)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 9887654
No 57
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=78.32 E-value=1.6 Score=38.66 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~ 627 (1116)
...|+..++|+.+|+++|.+..|+|++++||+..
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 4579999999999999999999999999999875
No 58
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=78.20 E-value=6.3 Score=41.21 Aligned_cols=67 Identities=10% Similarity=0.226 Sum_probs=54.2
Q ss_pred eEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCc-CCccccccCCCCCEEEEEeCC
Q 001242 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDK-RTSFRLSQIEDGDIICFQKSP 777 (1116)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~-~~t~~~~el~~GDIi~fQ~~~ 777 (1116)
-.+.+++.++|.+|...+++++++|+++++.||-=.. .+.. +.++. +.|+..+.|++|+-|+.+...
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~--~~~~-~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYM--SNTF-EPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEE--TTEE-EECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecC--CCCe-eecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 3466799999999999999999999998898876332 2323 55554 679999999999999999875
No 59
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=77.72 E-value=4.5 Score=36.65 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=52.7
Q ss_pred EEEEEeecCCCC-eEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 691 LLFFKLYDPEKG-ELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 691 llFlK~fDp~~~-~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
.|-||.=+.+.. .+ .+.|.++.+++.|+..-+++.|++.++---+|. + +.|.++.|....++.|||
T Consensus 25 ~I~LkV~~~dg~~~v----~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD------G---~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTL----EVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD------G---TKLSGRELPADLGMESGD 91 (97)
T ss_dssp EEEEEEEESSSSCEE----EEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET------T---EECCSCSCHHHHTCCTTE
T ss_pred eEEEEEEcCCCCEEE----EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC------C---EEcCCCCCHHHcCCCCCC
Confidence 566666666552 33 367899999999999999999999774322331 2 567889999999999999
Q ss_pred EEEE
Q 001242 770 IICF 773 (1116)
Q Consensus 770 Ii~f 773 (1116)
+|-+
T Consensus 92 ~IDv 95 (97)
T 2jxx_A 92 LIEV 95 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
No 60
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=77.03 E-value=2.7 Score=38.00 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccC
Q 001242 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1116)
Q Consensus 686 ~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1116)
....+-||+|..+-.+ + .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++.+.++....|
T Consensus 19 ~~~~m~I~Vk~~~g~~--~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i 83 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKT--I----TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNI 83 (98)
T ss_dssp ---CCEEEEEETTCCE--E----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTCBSGGGTC
T ss_pred CCCeEEEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHCCC
Confidence 3445889999876432 2 345788999999999999999999887755552 2 23677889999999
Q ss_pred CCCCEEEEEe
Q 001242 766 EDGDIICFQK 775 (1116)
Q Consensus 766 ~~GDIi~fQ~ 775 (1116)
.+|+.|..-.
T Consensus 84 ~~g~~i~l~~ 93 (98)
T 4hcn_B 84 QKESTLHLVL 93 (98)
T ss_dssp CTTEEEEEEC
T ss_pred CCCCEEEEEE
Confidence 9999887643
No 61
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.82 E-value=6.9 Score=33.40 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=54.5
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..+-||+|..+- +.+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++...++....+.+
T Consensus 6 ~~m~i~vk~~~g--~~~----~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------g---k~L~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 6 SGMQLTVKALQG--REC----SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK------G---KALADGKRLSDYSIGP 70 (81)
T ss_dssp SSEEEEEEETTS--CEE----EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET------T---EECCTTSBGGGGTCCS
T ss_pred CcEEEEEEeCCC--CEE----EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------C---eECCCCCcHHHcCCCC
Confidence 347788886543 332 356889999999999999999999887766663 2 2356678999999999
Q ss_pred CCEEEEE
Q 001242 768 GDIICFQ 774 (1116)
Q Consensus 768 GDIi~fQ 774 (1116)
|+.|..-
T Consensus 71 g~~i~l~ 77 (81)
T 2dzi_A 71 NSKLNLV 77 (81)
T ss_dssp SBCCEEE
T ss_pred CCEEEEE
Confidence 9987654
No 62
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=76.57 E-value=2.9 Score=37.91 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
...+++..++|+.+|+++|.+..|+|++++||....
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 356899999999999999999999999999998753
No 63
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=76.37 E-value=4.5 Score=34.94 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=55.5
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1116)
.+-||+|..+-. ++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....|.+|
T Consensus 3 ~m~i~vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~------g---~~L~d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 3 HMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKW 67 (85)
T ss_dssp CEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTGGGTCCTT
T ss_pred eEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 367888877543 22 246789999999999999999999887655552 2 24567789999999999
Q ss_pred CEEEEEeC
Q 001242 769 DIICFQKS 776 (1116)
Q Consensus 769 DIi~fQ~~ 776 (1116)
+.|..-..
T Consensus 68 ~~l~l~~r 75 (85)
T 3mtn_B 68 STLFLLLR 75 (85)
T ss_dssp CEEEEECC
T ss_pred CEEEEEEE
Confidence 99877644
No 64
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=76.10 E-value=2.1 Score=38.45 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=49.4
Q ss_pred EeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEE
Q 001242 707 VGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICF 773 (1116)
Q Consensus 707 ~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~f 773 (1116)
.-++-|.++.+.+.|+...+++.|++.++=.-+|.. ..|.+..|-...++.+||||=+
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG---------~rI~~~~TP~~L~meD~DiID~ 89 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGE---------TELSPTATPRTLKLGVADIIDC 89 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETT---------EECCTTSCHHHHTCCSSCEEEE
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECC---------cCCCCCCCHhHcCCCCCCEEEE
Confidence 456778999999999999999999999888777764 3477888999999999999933
No 65
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=75.98 E-value=3.5 Score=37.04 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=26.6
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~ 1045 (1116)
+..-.+.|.+.||+..+|+||++++||+..
T Consensus 23 a~~h~v~I~~~etv~~~ke~V~eqTgIp~~ 52 (94)
T 4efo_A 23 MTAHKIYIHSYNTATIFHELVYKQTKIISS 52 (94)
T ss_dssp TEEEEEEEETTCBHHHHHHHHHHHHCCCGG
T ss_pred ceEEEEEeccchHHHHHHHHHHHHhCCCHH
Confidence 445569999999999999999999999985
No 66
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=75.52 E-value=16 Score=32.98 Aligned_cols=82 Identities=10% Similarity=-0.024 Sum_probs=59.7
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeecc-CCcCCccccccC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEH-LDKRTSFRLSQI 765 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~-i~~~~t~~~~el 765 (1116)
.+.+-|+++.=....+. -.+-|+.+.+|++|...|..+.|+|++..-.+|.-- ++. .+.. .+...++....|
T Consensus 12 ~~~v~l~It~s~~~~~~----~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~--~g~-~~~~L~~D~~tL~~Y~I 84 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFS----ADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD--SGS-KVAVLSDDSRPLGFFSP 84 (97)
T ss_dssp CCCEEEEEEETTSSCCC----EEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS--SSC-BCCCSSGGGSCHHHHCC
T ss_pred CceEEEEEEECCCCceE----EEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC--CCc-ccceecCCcCCHHHCCC
Confidence 45688888873332222 236789999999999999999999999887666531 111 2233 477889999999
Q ss_pred CCCCEEEEEe
Q 001242 766 EDGDIICFQK 775 (1116)
Q Consensus 766 ~~GDIi~fQ~ 775 (1116)
++|+.|....
T Consensus 85 ~~g~~Ihlvd 94 (97)
T 2kj6_A 85 FDGFRLHIID 94 (97)
T ss_dssp CSCCEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999987654
No 67
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=75.23 E-value=5.3 Score=34.13 Aligned_cols=71 Identities=6% Similarity=0.091 Sum_probs=54.3
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1116)
.+-||+|..+-. ++ .+-|+.+++|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|
T Consensus 4 ~m~i~Vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~ 68 (79)
T 3phx_B 4 PLSILVRNNKGR--SS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPL 68 (79)
T ss_dssp CEEEEEECTTSC--EE----EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTCCTT
T ss_pred CEEEEEEeCCCC--EE----EEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC------C---EECCCCCcHHHCCCCCC
Confidence 367888876543 22 256889999999999999999999887655552 2 34667889999999999
Q ss_pred CEEEEE
Q 001242 769 DIICFQ 774 (1116)
Q Consensus 769 DIi~fQ 774 (1116)
+.|..-
T Consensus 69 ~~l~l~ 74 (79)
T 3phx_B 69 STVFMN 74 (79)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 998764
No 68
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=74.91 E-value=2.7 Score=36.48 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|++.|++..++|++++||+.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 356778889999999999999999999999986
No 69
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=74.70 E-value=3.8 Score=34.44 Aligned_cols=70 Identities=14% Similarity=0.270 Sum_probs=51.7
Q ss_pred EEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEE
Q 001242 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1116)
Q Consensus 692 lFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1116)
||+|..+-. .+ .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++.+.++....+.+|+.|
T Consensus 3 i~vk~~~g~--~~----~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g---~~L~d~~tL~~~~i~~g~~i 67 (76)
T 3a9j_A 3 IFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQRESTL 67 (76)
T ss_dssp EEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTGGGTCCTTCEE
T ss_pred EEEEcCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC------C---eECCCCCcHHHcCCCCCCEE
Confidence 566665432 22 345788999999999999999999886655552 2 23566789999999999998
Q ss_pred EEEeC
Q 001242 772 CFQKS 776 (1116)
Q Consensus 772 ~fQ~~ 776 (1116)
..-..
T Consensus 68 ~l~~~ 72 (76)
T 3a9j_A 68 HLVLR 72 (76)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77543
No 70
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=74.14 E-value=5 Score=40.76 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=56.6
Q ss_pred CCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCcccccc
Q 001242 685 KSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQ 764 (1116)
Q Consensus 685 ~~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~e 764 (1116)
++...|.|.++ + .... -++-|.++.+++.|+...+++.|++.++---+|. + ..|..+.|....+
T Consensus 53 dp~e~InLKVk--~-dG~e----V~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD------G---qRI~~ddTPeDLd 116 (207)
T 3tix_A 53 KPETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD------G---IEIQADQTPEDLD 116 (207)
T ss_dssp --CCEEEEEEE--C-SSCE----EEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET------T---EECCSSCCTTTTT
T ss_pred CCCCcEEEEEe--c-CCCE----EEEEEccCChHHHHHHHHHHHhCCCcccEEEEEC------C---eecCCCCCHHHcC
Confidence 34567888886 2 3333 4678899999999999999999999865434442 2 4677899999999
Q ss_pred CCCCCEEEEEeC
Q 001242 765 IEDGDIICFQKS 776 (1116)
Q Consensus 765 l~~GDIi~fQ~~ 776 (1116)
+.|||+|=+-..
T Consensus 117 MEDGDtIDV~le 128 (207)
T 3tix_A 117 MEDNDIIEAHRE 128 (207)
T ss_dssp CCTTEEEEECCC
T ss_pred CCCCCEEEEEEe
Confidence 999998865444
No 71
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=74.10 E-value=11 Score=31.72 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-||+|. +- ++ -.+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....+.+|+
T Consensus 5 m~i~vk~-~g--~~----~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~------g---k~L~d~~tL~~~~i~~g~ 68 (77)
T 2bwf_A 5 LNIHIKS-GQ--DK----WEVNVAPESTVLQFKEAINKANGIPVANQRLIYS------G---KILKDDQTVESYHIQDGH 68 (77)
T ss_dssp EEEEEEE-TT--EE----EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTC
T ss_pred EEEEEEE-CC--EE----EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC------C---eEcCCCCCHHHcCCCCCC
Confidence 5678887 32 22 2356789999999999999999999876655542 2 235667899999999999
Q ss_pred EEEEEe
Q 001242 770 IICFQK 775 (1116)
Q Consensus 770 Ii~fQ~ 775 (1116)
.|..-.
T Consensus 69 ~i~l~~ 74 (77)
T 2bwf_A 69 SVHLVK 74 (77)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 987754
No 72
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=74.04 E-value=3.9 Score=34.38 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=51.6
Q ss_pred EEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEE
Q 001242 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1116)
Q Consensus 692 lFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1116)
||+|..+-. ++ .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++++.++....+.+|+.|
T Consensus 3 i~vk~~~g~--~~----~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~------g---~~L~d~~tL~~~~i~~g~~i 67 (76)
T 1ndd_A 3 IKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSVL 67 (76)
T ss_dssp EEEECTTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBGGGGTCCTTCEE
T ss_pred EEEECCCCC--EE----EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCcHHHcCCCCCCEE
Confidence 566654432 22 345788999999999999999999876655552 2 24567889999999999998
Q ss_pred EEEeC
Q 001242 772 CFQKS 776 (1116)
Q Consensus 772 ~fQ~~ 776 (1116)
..-..
T Consensus 68 ~l~~~ 72 (76)
T 1ndd_A 68 HLVLA 72 (76)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77543
No 73
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=73.90 E-value=3.3 Score=35.80 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|++.|++..++|++++||+.
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 16 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 457888899999999999999999999999874
No 74
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=73.71 E-value=7.2 Score=41.17 Aligned_cols=66 Identities=9% Similarity=0.235 Sum_probs=53.6
Q ss_pred EEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCC-cCCccccccCCCCCEEEEEeCC
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLD-KRTSFRLSQIEDGDIICFQKSP 777 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~-~~~t~~~~el~~GDIi~fQ~~~ 777 (1116)
.+.+++.++|.+|...+++++++|+++++.||-=.. .+.. +.+. .+.|+..+.|++|+-|+.+...
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~--~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYM--SNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSS--SSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecC--CCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 456799999999999999999999998999986331 2222 4444 5789999999999999999875
No 75
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=73.63 E-value=3.6 Score=35.24 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.7
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+++|..++|+.+|++.+++..|+|++++||..
T Consensus 15 ~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 15 EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 3468899999999999999999999999999865
No 76
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.67 E-value=2.9 Score=37.54 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=31.4
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~ 627 (1116)
..+++..++|+.+|+++|++..|+|++++||...
T Consensus 21 ~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 21 SEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred EEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 5678999999999999999999999999999874
No 77
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=72.53 E-value=4.1 Score=34.84 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|++.|++..|+|++++||..
T Consensus 17 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 457888899999999999999999999999875
No 78
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=72.32 E-value=4.6 Score=35.56 Aligned_cols=71 Identities=14% Similarity=0.289 Sum_probs=54.5
Q ss_pred EEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCE
Q 001242 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1116)
Q Consensus 691 llFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1116)
-||+|..+-. ++ .+-|+.+++|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+.
T Consensus 2 ~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 2 LIKVKTLTGK--EI----EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS------G---KQMNDEKTAADYKILGGSV 66 (88)
T ss_dssp EEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC------C---eECCCCCcHHHcCCCCCCE
Confidence 4677766543 22 346788999999999999999999887766662 2 2456788999999999999
Q ss_pred EEEEeC
Q 001242 771 ICFQKS 776 (1116)
Q Consensus 771 i~fQ~~ 776 (1116)
|..-..
T Consensus 67 l~l~~r 72 (88)
T 4fbj_B 67 LHLVLA 72 (88)
T ss_dssp EEEECB
T ss_pred EEEEEE
Confidence 988755
No 79
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=72.00 E-value=4.3 Score=35.57 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 23 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 55 (84)
T 2kk8_A 23 FELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV 55 (84)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 457888899999999999999999999999874
No 80
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.97 E-value=4.8 Score=36.66 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=30.1
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.|..++|+.+|++.|++..|+|++++||..
T Consensus 41 i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~ 73 (100)
T 1uh6_A 41 VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK 73 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 457888999999999999999999999999975
No 81
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=71.81 E-value=4.5 Score=35.42 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|++.|++..|+|++++||..
T Consensus 30 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 30 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 357888999999999999999999999999875
No 82
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=71.22 E-value=3.8 Score=34.45 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|++.|++..|++++++||..
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 356788889999999999999999999999875
No 83
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=71.00 E-value=4.9 Score=35.02 Aligned_cols=33 Identities=15% Similarity=0.411 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|+++|++..|++++++||..
T Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 20 YAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred EEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 357788899999999999999999999999864
No 84
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.83 E-value=13 Score=33.96 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=57.7
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...+-||+|..+- + + .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++.+.++....|.
T Consensus 15 ~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gi~ 78 (106)
T 1wx7_A 15 PHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------G---KILKDPDSLAQCGVR 78 (106)
T ss_dssp SSEEEEEEECSSC---E--E--EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET------T---EECCTTSCHHHHTCC
T ss_pred CceEEEEEEeCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHcCCC
Confidence 4558899998642 2 2 567889999999999999999999886655552 2 235667899999999
Q ss_pred CCCEEEEEeC
Q 001242 767 DGDIICFQKS 776 (1116)
Q Consensus 767 ~GDIi~fQ~~ 776 (1116)
+|++|..-..
T Consensus 79 ~g~~i~l~~~ 88 (106)
T 1wx7_A 79 DGLTVHLVIK 88 (106)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988765
No 85
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=70.67 E-value=9.5 Score=33.44 Aligned_cols=72 Identities=6% Similarity=0.076 Sum_probs=55.5
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-||+|..+- +++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+
T Consensus 5 m~I~Vk~~~g--~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~~I~~g~ 69 (88)
T 2hj8_A 5 LSILVRNNKG--RSS----TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE------G---KPLEDQLPLGEYGLKPLS 69 (88)
T ss_dssp EEEEEEETTS--CEE----EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS------S---SCCCTTSBHHHHHCSTTC
T ss_pred EEEEEECCCC--CEE----EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCCC
Confidence 6677776553 222 356789999999999999999999987766652 2 346678899999999999
Q ss_pred EEEEEeC
Q 001242 770 IICFQKS 776 (1116)
Q Consensus 770 Ii~fQ~~ 776 (1116)
.|..-..
T Consensus 70 ~i~l~~~ 76 (88)
T 2hj8_A 70 TVFMNLR 76 (88)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9887655
No 86
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.52 E-value=6.6 Score=34.20 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=56.2
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1116)
.+-||+|..+- +++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....+.+|
T Consensus 7 ~m~i~Vk~~~g--~~~----~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~------G---k~L~d~~tL~~~~i~~g 71 (87)
T 1wh3_A 7 GIQVFVKNPDG--GSY----AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ------G---QVLQDWLGLGIYGIQDS 71 (87)
T ss_dssp SEEEEEEETTT--EEE----EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET------T---EECCSSSBHHHHTCCTT
T ss_pred CEEEEEEcCCC--CEE----EEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC------C---EEccCCCCHHHCCCCCC
Confidence 47888887653 222 356889999999999999999999887766652 2 23567789999999999
Q ss_pred CEEEEEeC
Q 001242 769 DIICFQKS 776 (1116)
Q Consensus 769 DIi~fQ~~ 776 (1116)
+.|..-..
T Consensus 72 ~~i~l~~~ 79 (87)
T 1wh3_A 72 DTLILSKK 79 (87)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEEe
Confidence 99877654
No 87
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=70.50 E-value=4.8 Score=35.26 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=28.1
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~ 1045 (1116)
|-.|.+.|.+..|+.++|++|+++.|++..
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 49 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVS 49 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGG
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 889999999999999999999999999853
No 88
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=70.01 E-value=5.2 Score=35.20 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|++.|++..|+|++++||..
T Consensus 17 ~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 17 STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 457888999999999999999999999999864
No 89
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.76 E-value=9.9 Score=33.85 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
...+-||+|.- .+++ .+-|..+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.
T Consensus 15 ~~~m~i~Vk~~---g~~~----~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~ 78 (96)
T 1wx8_A 15 SRIIRVSVKTP---QDCH----EFFLAENSNVRRFKKQISKYLHCNADRLVLIFT------G---KILRDQDILSQRGIL 78 (96)
T ss_dssp SCEEEEEEECS---SSEE----EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET------T---EECCTTSCHHHHTCC
T ss_pred CCcEEEEEEEC---CeEE----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---EECCCcCCHHHCCCC
Confidence 35588999885 3443 456889999999999999999999887655552 2 235667899999999
Q ss_pred CCCEEEEEeC
Q 001242 767 DGDIICFQKS 776 (1116)
Q Consensus 767 ~GDIi~fQ~~ 776 (1116)
+|+.|..-..
T Consensus 79 ~g~~i~l~~~ 88 (96)
T 1wx8_A 79 DGSTVHVVVR 88 (96)
T ss_dssp TTEEEECCBC
T ss_pred CCCEEEEEEe
Confidence 9999876443
No 90
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=69.73 E-value=5.3 Score=33.79 Aligned_cols=33 Identities=33% Similarity=0.522 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|+..|++..|+|++++||..
T Consensus 16 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 16 WEVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 356788899999999999999999999999864
No 91
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=69.60 E-value=4.3 Score=35.42 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.9
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.|..++|+.+|++.|++..|+|++++||..
T Consensus 25 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 25 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 457888899999999999999999999999875
No 92
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.54 E-value=4.7 Score=36.71 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=29.8
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w 625 (1116)
..++.|..+.|+.+|++.|++..|+|++++||-
T Consensus 31 ~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI 63 (100)
T 1wju_A 31 KNLLETRLHITGRELRSKIAETFGLQENYIKIV 63 (100)
T ss_dssp SEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE
T ss_pred EEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE
Confidence 346788999999999999999999999999984
No 93
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.35 E-value=15 Score=34.65 Aligned_cols=74 Identities=12% Similarity=0.101 Sum_probs=57.0
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..+-||+|.- .+++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+
T Consensus 31 ~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~dygI~~ 94 (125)
T 1j8c_A 31 KIIKVTVKTP---KEKE----EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA------G---KILKDQDTLIQHGIHD 94 (125)
T ss_dssp CCEEEEEECS---SCEE----EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET------T---EEESTTSCGGGTTCSS
T ss_pred CcEEEEEEeC---CeEE----EEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC------C---EEcCCCCCHHHcCCCC
Confidence 4588999985 3332 456889999999999999999999887666653 2 2346678999999999
Q ss_pred CCEEEEEeCC
Q 001242 768 GDIICFQKSP 777 (1116)
Q Consensus 768 GDIi~fQ~~~ 777 (1116)
|++|.+-...
T Consensus 95 gstI~lv~~~ 104 (125)
T 1j8c_A 95 GLTVHLVIKR 104 (125)
T ss_dssp SEEEEEEEC-
T ss_pred CCEEEEEecc
Confidence 9998876653
No 94
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=69.33 E-value=5.5 Score=35.02 Aligned_cols=33 Identities=39% Similarity=0.523 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.|..++|+.+|+.+|++..|++++++||..
T Consensus 18 ~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 18 RTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 457888999999999999999999999999875
No 95
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=68.76 E-value=4.6 Score=33.90 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|++.|++..|+|++++||..
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 356778889999999999999999999999864
No 96
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=68.72 E-value=5 Score=35.48 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|++.|++..|++++++||..
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 30 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 357788899999999999999999999999875
No 97
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=68.60 E-value=5.7 Score=33.78 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=29.2
Q ss_pred EEE-EeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFR-VQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
++. +..++|+.+|++.|++..|+|++++||..
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 567 88899999999999999999999999865
No 98
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=68.40 E-value=12 Score=33.77 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=58.1
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccC
Q 001242 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1116)
Q Consensus 686 ~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1116)
....+-||+|.-+- + + .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|
T Consensus 19 ~~~~m~I~Vk~~~g---~--~--~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~ygI 82 (100)
T 1yqb_A 19 SPHLIKVTVKTPKD---K--E--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA------G---KILKDPDSLAQCGV 82 (100)
T ss_dssp CTTEEEEEEECSSC---E--E--EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBHHHHTC
T ss_pred CCCeEEEEEEcCCC---c--E--EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHCCC
Confidence 34558899998643 2 2 567899999999999999999999876655552 2 23567789999999
Q ss_pred CCCCEEEEEeC
Q 001242 766 EDGDIICFQKS 776 (1116)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1116)
.+|+.|..-..
T Consensus 83 ~~gstI~l~~r 93 (100)
T 1yqb_A 83 RDGLTVHLVIK 93 (100)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999887655
No 99
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=68.30 E-value=5.8 Score=34.77 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=45.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEe
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLE 670 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 670 (1116)
...+||++..++.+|++.|++.++++++.+.|+.-....+.-. .+.++ .|+.+.+.. .+.-+.||++
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v----i~~d~----dl~~aw~~~---~n~~LtL~C~ 81 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV----PLSED----SMKDAWGQV---KNYCLTLWCE 81 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE----ECCTT----THHHHHTTC---BTTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee----ccChH----HHHHHHHhc---cCCcEEEEEe
Confidence 4578999999999999999999999999998876443222211 22222 355555322 2335888876
No 100
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=68.21 E-value=4.3 Score=35.75 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.4
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|++.|++..|+|++++||..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 356778889999999999999999999999865
No 101
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=68.17 E-value=12 Score=33.81 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=55.7
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..+-||+|.- .+++ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+
T Consensus 24 ~~m~I~Vk~~---g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gI~~ 87 (101)
T 2klc_A 24 KIMKVTVKTP---KEKE----EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA------G---KILKDQDTLSQHGIHD 87 (101)
T ss_dssp CCEEEEEECS---SCEE----EEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET------T---EEECTTCCTGGGTCCT
T ss_pred CeEEEEEEeC---CcEE----EEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCcCcHHHcCCCC
Confidence 4488899875 2332 456889999999999999999999886655552 2 2356678999999999
Q ss_pred CCEEEEEeC
Q 001242 768 GDIICFQKS 776 (1116)
Q Consensus 768 GDIi~fQ~~ 776 (1116)
|+.|..-..
T Consensus 88 g~~I~l~~~ 96 (101)
T 2klc_A 88 GLTVHLVIK 96 (101)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 999877554
No 102
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.05 E-value=5.9 Score=33.85 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|++.|++..|++++++||..
T Consensus 20 ~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 20 CSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp EEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 357888899999999999999999999999864
No 103
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=68.05 E-value=6.4 Score=34.64 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=52.4
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-||+|..+-.+- .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++.+.|+....+.+|+
T Consensus 10 ~~i~v~~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~ 74 (88)
T 1sif_A 10 LQLFIKTLTGKTF------TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 74 (88)
T ss_dssp CEEEEEETTSCEE------EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBSGGGTCCTTC
T ss_pred eEEEEEeCCCCEE------EEEECCCChHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCcHHHcCCCCCC
Confidence 3466666554321 245788999999999999999999887666652 2 235667899999999999
Q ss_pred EEEEEeC
Q 001242 770 IICFQKS 776 (1116)
Q Consensus 770 Ii~fQ~~ 776 (1116)
.|..-..
T Consensus 75 ~i~l~~r 81 (88)
T 1sif_A 75 TLHLVLR 81 (88)
T ss_dssp EEEEEC-
T ss_pred EEEEEEe
Confidence 9876543
No 104
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=68.03 E-value=4.4 Score=35.70 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|++.|++..|+|++++||..
T Consensus 22 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 22 FTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 456788889999999999999999999999875
No 105
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=67.96 E-value=5.7 Score=35.56 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=29.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.|..++|+.+|+++|++..|+|++++||..
T Consensus 27 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 59 (94)
T 2kan_A 27 FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY 59 (94)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 457888899999999999999999999999964
No 106
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=67.49 E-value=12 Score=34.22 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=58.4
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccC
Q 001242 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1116)
Q Consensus 686 ~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1116)
....+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|
T Consensus 20 ~~~~m~I~Vk~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI 84 (106)
T 1ttn_A 20 SGYECQLRLRLSTGK--DL----KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS------G---RPLTDKMKFEELKI 84 (106)
T ss_dssp -CCSEEEEEEETTTE--EE----EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET------T---EECCTTSHHHHCCC
T ss_pred CCCeEEEEEEcCCCC--EE----EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC------C---EECCCCCcHHHcCC
Confidence 345588999986542 22 256889999999999999999999887766652 2 23567889999999
Q ss_pred CCCCEEEEEeC
Q 001242 766 EDGDIICFQKS 776 (1116)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1116)
.+|+.|..-..
T Consensus 85 ~~g~ti~lv~~ 95 (106)
T 1ttn_A 85 PKDYVVQVIVS 95 (106)
T ss_dssp SSSCEEEEECC
T ss_pred CCCCEEEEEEe
Confidence 99999888655
No 107
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=67.15 E-value=6.2 Score=34.56 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=29.4
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|+++|++..|+|++++||..
T Consensus 24 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (85)
T 2kd0_A 24 IPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF 56 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 356788899999999999999999999999863
No 108
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=66.98 E-value=15 Score=33.75 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=56.5
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..+-||+|..+- +.+ .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++.+.|+....+.+
T Consensus 34 ~~m~I~Vk~~~g--~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~gI~~ 98 (111)
T 2ojr_A 34 LAMQIFVKTLTG--KTI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 98 (111)
T ss_dssp SCEEEEEECSSS--CEE----EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET------T---EECCSSCBTTTTTCCT
T ss_pred CeEEEEEEcCCC--CEE----EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC------C---EECCCCCcHHHcCCCC
Confidence 458899996543 222 356889999999999999999999887766652 2 2356688999999999
Q ss_pred CCEEEEEeC
Q 001242 768 GDIICFQKS 776 (1116)
Q Consensus 768 GDIi~fQ~~ 776 (1116)
|+.|.+-..
T Consensus 99 gs~I~l~~r 107 (111)
T 2ojr_A 99 ESTLHLVLR 107 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEe
Confidence 998877543
No 109
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=66.98 E-value=5.3 Score=36.61 Aligned_cols=71 Identities=27% Similarity=0.336 Sum_probs=54.1
Q ss_pred EEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCE
Q 001242 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1116)
Q Consensus 691 llFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1116)
-||+|..+..+ + .+-|..+++|.+|...|.++.|+|++..-.+|. + ..++...++....|.+|+.
T Consensus 3 ~I~Vk~~~g~~--~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 3 SLTFKNFKKEK--V----PLDLEPSNTILETKTKLAQSISCEESQIKLIYS------G---KVLQDSKTVSECGLKDGDQ 67 (106)
T ss_dssp CEEEECTTCCE--E----EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET------T---EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEeCCCCE--E----EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC------C---EECCCcCCHHHcCCCCCCE
Confidence 46777655432 1 235788999999999999999999887765552 2 2366788999999999999
Q ss_pred EEEEeC
Q 001242 771 ICFQKS 776 (1116)
Q Consensus 771 i~fQ~~ 776 (1116)
|..-..
T Consensus 68 i~lv~~ 73 (106)
T 3m62_B 68 VVFMVS 73 (106)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 988765
No 110
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=66.86 E-value=6.5 Score=37.06 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=32.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
...+++..++|+.+|+.+|++..|+|++++||....
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 356899999999999999999999999999997753
No 111
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=66.69 E-value=9.7 Score=39.14 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=57.2
Q ss_pred CCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCcccccc
Q 001242 685 KSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQ 764 (1116)
Q Consensus 685 ~~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~e 764 (1116)
++...|.|+++- .... -++-|.++++++.|+...+++.|+|.+.---+|. + ..|..+.|....+
T Consensus 25 ~~~~~I~LkV~~---~g~~----v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd------G---~rI~~~~TP~dL~ 88 (200)
T 3pge_A 25 KPETHINLKVSD---GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD------G---IRIQADQTPEDLD 88 (200)
T ss_dssp CCCCCEEEEEEC---SSCE----EEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET------T---EECCTTCCTTTTT
T ss_pred CCCCeEEEEEec---CCCE----EEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC------C---EEcCCCCCHHHcC
Confidence 346778888872 3232 4678899999999999999999998754433342 2 5678899999999
Q ss_pred CCCCCEE-EEEeC
Q 001242 765 IEDGDII-CFQKS 776 (1116)
Q Consensus 765 l~~GDIi-~fQ~~ 776 (1116)
+.+||+| +|+..
T Consensus 89 MEdgD~Idv~~~q 101 (200)
T 3pge_A 89 MEDNDIIEAHREQ 101 (200)
T ss_dssp CCTTEEEEEEECC
T ss_pred CCCCCEEEEEecc
Confidence 9999966 55544
No 112
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=66.67 E-value=6.5 Score=34.01 Aligned_cols=34 Identities=6% Similarity=0.225 Sum_probs=31.5
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
...++|.+++++..|++..++..|++++++||+.
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999987
No 113
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=66.51 E-value=6 Score=35.59 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=30.4
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+++|..++|+.+|++.|++..|++++++||..
T Consensus 34 ~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 467899999999999999999999999999865
No 114
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.16 E-value=5.6 Score=36.13 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=30.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..++.|..++|+.+|+++|++..|++++++||..
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 56 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY 56 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE
Confidence 3457888899999999999999999999999975
No 115
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=65.88 E-value=7.4 Score=32.91 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=31.9
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~ 627 (1116)
...++|.+++++..|.+..++..|++++++||+.=
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC
Confidence 35789999999999999999999999999999873
No 116
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=65.86 E-value=7.3 Score=34.69 Aligned_cols=70 Identities=11% Similarity=0.233 Sum_probs=53.6
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1116)
.+-||+|. .+++ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++.+.|+....|.+|
T Consensus 19 ~m~I~Vk~----g~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~y~I~~g 81 (93)
T 2l7r_A 19 SMQLFVRA----QELH----TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA------G---APLEDEATLGQCGVEAL 81 (93)
T ss_dssp -CEEEEES----SSEE----EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET------T---EECCTTSBHHHHTCCSS
T ss_pred cEEEEEEC----CCEE----EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC------C---EECCCCCcHHHCCCCCC
Confidence 47788886 2333 356788999999999999999999887666653 2 23567889999999999
Q ss_pred CEEEEEe
Q 001242 769 DIICFQK 775 (1116)
Q Consensus 769 DIi~fQ~ 775 (1116)
+.|..-.
T Consensus 82 stI~lv~ 88 (93)
T 2l7r_A 82 TTLEVAG 88 (93)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9987643
No 117
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.68 E-value=13 Score=32.48 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=56.1
Q ss_pred CcEEEEEEeecCCCCeEEEEeEE-EEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRL-FLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~-~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
..+-||+|..+-. +++ .+ -|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.
T Consensus 6 ~~m~i~Vk~~~g~-~~~----~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~------g---k~L~d~~tL~~~~i~ 71 (89)
T 1wy8_A 6 SGMWIQVRTIDGS-KTC----TIEDVSRKATIEELRERVWALFDVRPECQRLFYR------G---KQLENGYTLFDYDVG 71 (89)
T ss_dssp SCEEEEEEETTCS-CEE----EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET------T---EECCSSSBHHHHTCC
T ss_pred CcEEEEEEECCCC-ceE----EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---eECCCCCCHHHCCCC
Confidence 4477888876531 122 34 3889999999999999999999887766652 2 235678899999999
Q ss_pred CCCEEEEEeC
Q 001242 767 DGDIICFQKS 776 (1116)
Q Consensus 767 ~GDIi~fQ~~ 776 (1116)
+|+.|..-..
T Consensus 72 ~g~~i~l~~~ 81 (89)
T 1wy8_A 72 LNDIIQLLVR 81 (89)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 9998876544
No 118
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=65.58 E-value=5.5 Score=35.48 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.|..++|+.+|++.|++..|++++++||..
T Consensus 14 ~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 14 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 356788889999999999999999999999875
No 119
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=65.52 E-value=2 Score=40.95 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=27.7
Q ss_pred cccccccCCcccchhhHHHHHhcc-hhHHHHHccCC
Q 001242 195 GYVGLKNQGATCYMNSLLQTLYHI-PYFRKAVYHMP 229 (1116)
Q Consensus 195 g~~GL~N~GnTCY~NSvLQ~L~~~-p~fr~~l~~~~ 229 (1116)
.+.|+.|.-++|++|++||..... .+|-+.+|..|
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y~sp 47 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSSP 47 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTCS
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhccCCh
Confidence 468999999999999999997554 46777777544
No 120
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=65.45 E-value=5.3 Score=35.65 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.|..++|+.+|+++|++..|+|++++||..
T Consensus 30 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 62 (93)
T 2l7r_A 30 HTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL 62 (93)
T ss_dssp EEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE
Confidence 356777889999999999999999999999864
No 121
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=65.35 E-value=7.2 Score=35.32 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.3
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.+..++|+.+|+++|++..|++++++||..
T Consensus 35 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 66 (100)
T 1yqb_A 35 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 66 (100)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 57888899999999999999999999999864
No 122
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=65.07 E-value=6.7 Score=36.27 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..++|..++|+.+|+.+|++..|+|++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 457888999999999999999999999999975
No 123
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=64.93 E-value=21 Score=30.15 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCeEEEEeEEE-EecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLF-LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~-v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1116)
+-||+|..+-.+ + -.+- |+.+.+|.+|...|.+..|+|++..-.+|. + ..++...|+....+.+|
T Consensus 3 m~i~Vk~~~g~~--~---~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~------g---~~L~d~~tL~~~~i~~g 68 (78)
T 2faz_A 3 MWIQVRTMDGRQ--T---HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR------G---KQMEDGHTLFDYEVRLN 68 (78)
T ss_dssp EEEEEEETTSSC--E---EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTTTTTCCTT
T ss_pred EEEEEEECCCCE--E---EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCC
Confidence 456777654322 1 1244 788999999999999999999887655552 2 23567889999999999
Q ss_pred CEEEEEe
Q 001242 769 DIICFQK 775 (1116)
Q Consensus 769 DIi~fQ~ 775 (1116)
+.|..-.
T Consensus 69 ~~i~l~~ 75 (78)
T 2faz_A 69 DTIQLLV 75 (78)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9887643
No 124
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=64.43 E-value=7.8 Score=36.32 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=29.3
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.+..++|+.+|+..|+...|+|++++||+.
T Consensus 15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~ 46 (118)
T 4ajy_B 15 FTDAKESSTVFELKRIVEGILKRPPDEQRLYK 46 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe
Confidence 45788899999999999999999999999985
No 125
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=64.28 E-value=8.5 Score=34.48 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=52.7
Q ss_pred EEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEE
Q 001242 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1116)
Q Consensus 692 lFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1116)
||+|..+-. ++ .+-|+.+.+|++|...|.+..|+|++..-.+|. + ..++.+.|+....+.+|+.|
T Consensus 3 I~Vk~~~g~--~~----~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~i 67 (98)
T 1yx5_B 3 IFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTL 67 (98)
T ss_dssp EEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTCEE
T ss_pred EEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC------C---EECCCCCCHHHcCCCCCCEE
Confidence 566664432 22 355788999999999999999999886655552 2 23566889999999999998
Q ss_pred EEEeCC
Q 001242 772 CFQKSP 777 (1116)
Q Consensus 772 ~fQ~~~ 777 (1116)
..-...
T Consensus 68 ~l~~~~ 73 (98)
T 1yx5_B 68 HLVLRL 73 (98)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 876553
No 126
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=64.26 E-value=5.6 Score=35.80 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.|..++|+.+|++.|++..|+|++++||..
T Consensus 35 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 67 (98)
T 4hcn_B 35 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 67 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 356778889999999999999999999999875
No 127
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=64.21 E-value=10 Score=33.21 Aligned_cols=74 Identities=11% Similarity=0.241 Sum_probs=55.8
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...++....| +
T Consensus 4 ~~m~i~Vk~~~g~--~~----~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~------G---k~L~d~~tL~~~~i-~ 67 (90)
T 4dwf_A 4 DSLEVLVKTLDSQ--TR----TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ------G---RVLQDDKKLQEYNV-G 67 (90)
T ss_dssp CEEEEEEEETTCC--EE----EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET------T---EECCTTSBGGGGTC-T
T ss_pred cEEEEEEEcCCCC--EE----EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC------C---eECCCCCCHHHcCC-C
Confidence 3477899887643 22 246789999999999999999999887765652 2 23567889999999 8
Q ss_pred CCEEEEEeCC
Q 001242 768 GDIICFQKSP 777 (1116)
Q Consensus 768 GDIi~fQ~~~ 777 (1116)
|++|..-...
T Consensus 68 g~~i~l~~~~ 77 (90)
T 4dwf_A 68 GKVIHLVERA 77 (90)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9988766553
No 128
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=63.62 E-value=8.1 Score=35.13 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=35.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCccc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDT 1068 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~~~ 1068 (1116)
|-+|.+.|.+.+|+.++|++|+++.|++. ++.++ +..++ -|.|+..
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~---~qQrL--i~~Gk--~L~D~~T 83 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRW---NKIVL--KKWYT--IFKDHVS 83 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCG---GGCEE--EETTE--ECCSSCB
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCH---HHEEE--EECCE--ECCCCCC
Confidence 88999999999999999999999999984 34443 33343 4666543
No 129
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=63.39 E-value=13 Score=32.73 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=48.2
Q ss_pred EEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcc-eeeccCCcCCccccccCCCCCEEEEE
Q 001242 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPC-VMCEHLDKRTSFRLSQIEDGDIICFQ 774 (1116)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~-~~ie~i~~~~t~~~~el~~GDIi~fQ 774 (1116)
.-++.+.+|.+|...|..+.|+|++..-.+|..- .+ .....++...|+....+++|..|-.-
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~---~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDD---RGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECT---TSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecC---CCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 5578999999999999999999999886665421 11 12245778899999999999999543
No 130
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=63.30 E-value=9.7 Score=33.93 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.6
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
...|+|.+++++..|++..++..|++++++||+.
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F 50 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 50 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999986
No 131
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=62.99 E-value=8.5 Score=33.66 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=29.3
Q ss_pred eEE-EEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSF-RVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++ .+..++|+.+|++.|++..|+|++++||..
T Consensus 21 ~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 54 (89)
T 1wy8_A 21 CTIEDVSRKATIEELRERVWALFDVRPECQRLFY 54 (89)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 356 488889999999999999999999999875
No 132
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=62.79 E-value=9.3 Score=33.93 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=54.5
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-||+|..+-. .+ .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+
T Consensus 2 m~i~vk~~~g~--~~----~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~------G---~~L~d~~tL~~~~i~~~~ 66 (96)
T 3k9o_B 2 MQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 66 (96)
T ss_dssp CEEEEEETTCC--EE----EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTGGGTCCTTC
T ss_pred cEEEEEeCCCC--EE----EEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC------C---EECCCCCcHHHcCCCCCC
Confidence 35777776532 22 246788999999999999999999887655552 2 236678899999999999
Q ss_pred EEEEEeC
Q 001242 770 IICFQKS 776 (1116)
Q Consensus 770 Ii~fQ~~ 776 (1116)
.|..-..
T Consensus 67 ~i~l~~r 73 (96)
T 3k9o_B 67 TLHLVLR 73 (96)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 8887755
No 133
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=62.23 E-value=9.6 Score=34.17 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
...++|.+++++..|++.+++..|++++++||+.
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F 52 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 52 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999976
No 134
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=62.08 E-value=18 Score=31.16 Aligned_cols=73 Identities=10% Similarity=0.211 Sum_probs=55.0
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHh---cCCCCCCcEEEEEEeecCcceeeccCCcCCccccccC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQM---AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~---~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1116)
.+-||+|..+-. ++ .+-|+.+.+|.+|...|.+. .|+|++..-.+|. + ..++.+.++....+
T Consensus 5 ~m~i~vk~~~g~--~~----~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~------G---k~L~D~~tL~~~~i 69 (85)
T 2wyq_A 5 AVTITLKTLQQQ--TF----KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA------G---KILSDDVPIRDYRI 69 (85)
T ss_dssp CEEEEEEETTSC--EE----EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET------T---EECCTTSBGGGGCC
T ss_pred eEEEEEEECCCC--EE----EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC------C---EECcCCCCHHHcCC
Confidence 367788876543 22 35678999999999999997 7899877655552 2 23567789999999
Q ss_pred CCCCEEEEEeC
Q 001242 766 EDGDIICFQKS 776 (1116)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1116)
.+|+.|.+-..
T Consensus 70 ~~g~~i~l~~~ 80 (85)
T 2wyq_A 70 DEKNFVVVMVT 80 (85)
T ss_dssp CTTSEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999988754
No 135
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=61.92 E-value=4.7 Score=35.05 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=42.9
Q ss_pred EEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCC--cCCccccccCCCCCEEEEE
Q 001242 706 YVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLD--KRTSFRLSQIEDGDIICFQ 774 (1116)
Q Consensus 706 ~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~--~~~t~~~~el~~GDIi~fQ 774 (1116)
|.-.+-++.++++.+|...|.+.++.+.+..- +|-.- .|. .++. ...++....|.+||.|+..
T Consensus 14 G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~-l~~~~--~p~---~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 14 GVKRITATKRETAATFLKKVAKEFGFQNNGFS-VYINR--NKT---GEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCC-CCCSC--CGG---GGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCEEEEcCCcChHHHHHHHHHHHcCCCCCcce-EEecC--CCC---CcccCCCCCCHHHcCCCCCCEEEEe
Confidence 34444567889999999999999999865422 22111 242 2222 6778888999999999864
No 136
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=61.89 E-value=8.5 Score=34.88 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|+++|++..|++++++||..
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 356788889999999999999999999999864
No 137
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.55 E-value=7.1 Score=34.83 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..++|..++|+.+|+++|++..|++++++||..
T Consensus 29 ~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 61 (96)
T 1wx8_A 29 HEFFLAENSNVRRFKKQISKYLHCNADRLVLIF 61 (96)
T ss_dssp EEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 357888899999999999999999999999864
No 138
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.50 E-value=5.5 Score=35.71 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=28.5
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w 625 (1116)
.+.+..++|+.+|+++|++..|++++++||.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 4678888999999999999999999999986
No 139
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=61.49 E-value=10 Score=35.35 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=32.2
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
..|+|.+++++..|++..++..|++++.+|||.=.
T Consensus 53 v~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG 87 (115)
T 3kyd_D 53 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEG 87 (115)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETT
T ss_pred EEEEEccCChHHHHHHHHHHHhCCChhhEEEEECC
Confidence 47899999999999999999999999999999843
No 140
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.47 E-value=6.6 Score=35.28 Aligned_cols=36 Identities=6% Similarity=0.074 Sum_probs=32.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
....++++++|+.+|+..|++.+|+|+..+||....
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 456799999999999999999999999999998754
No 141
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=60.99 E-value=12 Score=33.52 Aligned_cols=34 Identities=15% Similarity=0.357 Sum_probs=31.4
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~ 627 (1116)
..|+|.+++++..|.+..++..|++++.+||+.=
T Consensus 30 i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd 63 (93)
T 2d07_B 30 VQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 63 (93)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC
Confidence 4789999999999999999999999999999863
No 142
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=60.40 E-value=11 Score=34.77 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=32.0
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIW 627 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~ 627 (1116)
...|+|.+++++..|++..++..|++++.+||+.=
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd 76 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 76 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC
Confidence 45789999999999999999999999999999874
No 143
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=60.40 E-value=7.8 Score=34.73 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.3
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|+..|++..|++++++||..
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 356777889999999999999999999999864
No 144
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=60.33 E-value=9.9 Score=35.32 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=30.2
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..++.+..++|+.+|+++|++..|+|++++||..
T Consensus 21 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 21 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 3467888899999999999999999999999864
No 145
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=60.24 E-value=12 Score=34.78 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=53.0
Q ss_pred EEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCE
Q 001242 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1116)
Q Consensus 691 llFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1116)
=||+|..+-.+- .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.|+....|.+|+.
T Consensus 11 ~i~vk~l~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI~~gst 75 (114)
T 2kdi_A 11 QIFAKTLTGKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA------G---KQLEDGRTLSDYNIQREST 75 (114)
T ss_dssp EEEEEETTCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTCBTTTTTCCSSCE
T ss_pred EEEEEeCCCcEE------EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCCCcHHHCCCCCCCE
Confidence 455555544221 244778899999999999999999887766653 2 2356788999999999999
Q ss_pred EEEEeCC
Q 001242 771 ICFQKSP 777 (1116)
Q Consensus 771 i~fQ~~~ 777 (1116)
|..-...
T Consensus 76 I~l~~~~ 82 (114)
T 2kdi_A 76 LHLVLRL 82 (114)
T ss_dssp EEEEECC
T ss_pred EEEEEEc
Confidence 8776653
No 146
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.96 E-value=8.1 Score=35.14 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=29.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w 625 (1116)
.++.|..++|+.+|+++|.+..|+|++++||-
T Consensus 21 ~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi 52 (100)
T 2dzm_A 21 VDVVLEDTCTVGEIKQILENELQIPVSKMLLK 52 (100)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCTTTCCEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCChhHeEEE
Confidence 45788889999999999999999999999983
No 147
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.93 E-value=11 Score=34.46 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=29.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.|..++|+.+|+++|++..|++++++||..
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 61 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF 61 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 56788889999999999999999999999864
No 148
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=59.71 E-value=15 Score=33.90 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=55.8
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1116)
.+-||+|..+-. ++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|.+|
T Consensus 35 ~m~I~Vk~~~G~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~g 99 (111)
T 3vdz_A 35 AMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKE 99 (111)
T ss_dssp CEEEEEECSSSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET------T---EECCTTSBTTTTTCCTT
T ss_pred cEEEEEEeCCCC--EE----EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC------C---EECCCCCcHHHCCCCCC
Confidence 488999987643 22 356889999999999999999999886655552 2 34667789999999999
Q ss_pred CEEEEEe
Q 001242 769 DIICFQK 775 (1116)
Q Consensus 769 DIi~fQ~ 775 (1116)
+.|..-.
T Consensus 100 s~I~l~~ 106 (111)
T 3vdz_A 100 STLHLVL 106 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9887654
No 149
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=59.43 E-value=36 Score=31.87 Aligned_cols=82 Identities=13% Similarity=-0.013 Sum_probs=58.4
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDG 768 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~G 768 (1116)
.|-|+++.=. .. ....+-++.+.+|++|...|.++.|+|++..-..|..-. +..++...+...|+....|++|
T Consensus 6 ~v~l~V~~~~---~~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~--~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 6 VYDLEITTNA---TD--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGD--DQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEEEESS---CC--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSS--SSEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEEEECC---CC--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCC--CccccccCCCcCCHHHCCCCCC
Confidence 4667777621 11 234567899999999999999999999998866665311 1112123467889999999999
Q ss_pred CEEEEEeCC
Q 001242 769 DIICFQKSP 777 (1116)
Q Consensus 769 DIi~fQ~~~ 777 (1116)
+.|..-...
T Consensus 79 ~~ihvvd~~ 87 (122)
T 1t0y_A 79 YRIHAVDVT 87 (122)
T ss_dssp EEEEEEECT
T ss_pred CEEEEEeCC
Confidence 999887643
No 150
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=59.25 E-value=44 Score=31.12 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=49.1
Q ss_pred CceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHHhhccCC-----C-CCccEEEEEEec-----------cEEEEec
Q 001242 899 LKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELS-----H-PNAELRLLEVFY-----------HKIYKIF 961 (1116)
Q Consensus 899 ~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~-----~-~~~~lrl~~i~~-----------~ki~~~~ 961 (1116)
..++.|...+-.-.... -.|.+++.+|+.||+.++..+++.+ . .....+|.|+.- +-..+++
T Consensus 5 ~~tf~v~V~~v~p~~py-~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL 83 (117)
T 2c5l_C 5 EESFFVQVHDVSPEQPR-TVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVL 83 (117)
T ss_dssp CCEEEEEEESCCSSCCE-EEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEEC
T ss_pred CceEEEEEecCCCCCCe-EEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEec
Confidence 34556666654433222 2789999999999999999999875 4 457899999862 2566777
Q ss_pred CCcccccc
Q 001242 962 APNEKIEN 969 (1116)
Q Consensus 962 ~~~~~i~~ 969 (1116)
.+++.+=.
T Consensus 84 ~~~E~~l~ 91 (117)
T 2c5l_C 84 LDQECVFQ 91 (117)
T ss_dssp CTTSBHHH
T ss_pred CCCCCHHH
Confidence 77765443
No 151
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=59.14 E-value=13 Score=32.43 Aligned_cols=70 Identities=9% Similarity=0.207 Sum_probs=51.5
Q ss_pred EEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCE
Q 001242 691 LLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDI 770 (1116)
Q Consensus 691 llFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDI 770 (1116)
..|++-++-. +. .+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+.++....|.+|+.
T Consensus 13 ~~~~~~~~g~--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~------G---k~L~D~~tL~~~gi~~g~~ 77 (85)
T 2kd0_A 13 IKLTVKFGGK--SI----PLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK------G---KVLVETSTLKQSDVGSGAK 77 (85)
T ss_dssp EEEEEEETTE--EE----EEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET------T---EECCTTCBTTTTTCCTTEE
T ss_pred EEEEEEECCE--EE----EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC------C---eECCCcCCHHHCCCCCCCE
Confidence 4555555432 22 245788999999999999999999887655552 2 2456788999999999998
Q ss_pred EEEEe
Q 001242 771 ICFQK 775 (1116)
Q Consensus 771 i~fQ~ 775 (1116)
|.+-.
T Consensus 78 l~l~~ 82 (85)
T 2kd0_A 78 LMLMA 82 (85)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87643
No 152
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.66 E-value=21 Score=32.18 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=28.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~ 1046 (1116)
|..|.+.|.+..|+.++|++|++++|++...
T Consensus 21 ~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~ 51 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEE 51 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHCcChHH
Confidence 5788899999999999999999999998643
No 153
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=58.50 E-value=13 Score=35.53 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=30.5
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecc
Q 001242 816 FCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPH 850 (1116)
Q Consensus 816 f~l~ls~~~~Y~~~a~~va~~l~~~~p~~lr~~~~ 850 (1116)
-.+.+-+++++.++...||+.+|+ +|..+|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~-~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGF-PQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCC-CGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCC-CcccEEEEEe
Confidence 356888999999999999999997 5999999985
No 154
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=58.43 E-value=11 Score=35.24 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=29.3
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
++.+..++|+.+|+..|+...|+|++++||+.
T Consensus 15 ~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~ 46 (118)
T 2fnj_B 15 FTDAKESSTVFELKRIVEGILKRPPEEQRLYK 46 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 46788899999999999999999999999973
No 155
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=58.22 E-value=23 Score=33.64 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=46.2
Q ss_pred EeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEee------------------cCcceee------------ccCCc
Q 001242 707 VGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIK------------------FEPCVMC------------EHLDK 756 (1116)
Q Consensus 707 ~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik------------------~~p~~~i------------e~i~~ 756 (1116)
+-.+.|+.+.+|.+++..||+.+|++..++..|--+.- +.|..+. ..+++
T Consensus 23 ~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~ 102 (128)
T 2kc2_A 23 VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDH 102 (128)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECS
T ss_pred EEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccC
Confidence 35677999999999999999999999776654432211 0111110 23455
Q ss_pred CCccccccCCCCCEEEEEe
Q 001242 757 RTSFRLSQIEDGDIICFQK 775 (1116)
Q Consensus 757 ~~t~~~~el~~GDIi~fQ~ 775 (1116)
..|+.+..|..||+|+.-+
T Consensus 103 srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 103 GRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSCHHHHTCCTTSEEEEEE
T ss_pred CCcHHHcCCCCCCEEEEEE
Confidence 6777777888888877654
No 156
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=57.98 E-value=9.2 Score=33.39 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=35.1
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCccc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDT 1068 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~~~ 1068 (1116)
|..|.+.|.+..|+.++|++|++++|++.... |+ +.. ++-|.|+..
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q---rL--i~~--Gk~L~D~~t 72 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQ---RL--IYQ--GRVLQDDKK 72 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGE---EE--EET--TEECCTTSB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHE---EE--EEC--CEECCCCCc
Confidence 77888999999999999999999999987543 33 333 345666543
No 157
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=57.94 E-value=9.5 Score=33.36 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=45.6
Q ss_pred EecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEEeCC
Q 001242 712 LKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (1116)
Q Consensus 712 v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (1116)
++.+.+|++|...|.+..|+|++..-.+|- + |....+.-+...++....|.+|+.|.+....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~---~-p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVG---Y-PPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEES---S-CCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeC---C-CCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 567899999999999999999775544442 1 4322121236789999999999999998663
No 158
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=57.73 E-value=11 Score=34.62 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.+..++|+.+|+.+|++..|++++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 457888899999999999999999999999864
No 159
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.54 E-value=11 Score=33.15 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=27.9
Q ss_pred EEEEecc-----ccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQ-----TSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.+..+ .|+.+|+++|++..|++++++||..
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~ 56 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF 56 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4567764 8999999999999999999999964
No 160
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=57.29 E-value=9 Score=34.40 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=28.5
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w 625 (1116)
.+.|..++|+.+|+++|++..|++++++||.
T Consensus 21 ~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi 51 (96)
T 1wgg_A 21 GVELNTDEPPMVFKAQLFALTGVQPARQKVM 51 (96)
T ss_dssp EEEEESSSCHHHHHHHHHHHTCCCTTTSCCE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 3678889999999999999999999999987
No 161
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=56.82 E-value=6.4 Score=34.84 Aligned_cols=29 Identities=10% Similarity=0.226 Sum_probs=26.3
Q ss_pred EEeccccHHHHHHHHHHHhCCCCcceeEE
Q 001242 597 RVQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1116)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~~~~~~~r~w 625 (1116)
.+..++|+.+|+++|++..|+|++++||.
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 45667899999999999999999999986
No 162
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=56.47 E-value=25 Score=31.70 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=56.0
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHH-HHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccC-
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKL-NQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI- 765 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i-~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el- 765 (1116)
..+-||+|.....+-+ -.+-|+.+++|.+|...| .+.-|+|++..-.+|. + ..++...++....|
T Consensus 18 ~~m~I~VKtl~g~~~~----i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~------G---k~L~D~~tL~dy~I~ 84 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFS----IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLK------G---KVLHDNLFLSDLKVT 84 (98)
T ss_dssp CCEEEEEEECSSSCEE----EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET------T---EEECTTCBGGGSCCB
T ss_pred CCEEEEEEcCCCCEEE----EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC------C---EECcCcCCHHHcCcC
Confidence 3478888887665222 234467999999999999 8888999887666652 2 34667889999999
Q ss_pred CCCCEEEEEe
Q 001242 766 EDGDIICFQK 775 (1116)
Q Consensus 766 ~~GDIi~fQ~ 775 (1116)
++|+.|..=.
T Consensus 85 ~~g~ti~lmv 94 (98)
T 4a20_A 85 PANSTITVMI 94 (98)
T ss_dssp TTBCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999987654
No 163
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.42 E-value=5.7 Score=36.13 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=27.6
Q ss_pred EEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 596 FRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
++|..++|+.+|+++|++..|++++++||..
T Consensus 42 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 42 VNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp BCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 4566788999999999999999999999875
No 164
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.76 E-value=13 Score=35.10 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=29.5
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+++|..++|+.+|+++|++..|++++++||..
T Consensus 44 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 44 EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 356788889999999999999999999999964
No 165
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.63 E-value=10 Score=33.94 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=27.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~ 1045 (1116)
|..|.+.|.+.+|+.++|++|++++||+..
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~ 55 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPA 55 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCST
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 667789999999999999999999999853
No 166
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.13 E-value=11 Score=33.35 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=27.5
Q ss_pred EEEEeccccHHHHHHHHHHHh--CCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEF--GIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~--~~~~~~~r~w~ 626 (1116)
++.+..++|+.+|+++|++.. |++++++||..
T Consensus 23 ~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~ 56 (93)
T 1wgd_A 23 ELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY 56 (93)
T ss_dssp EEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE
Confidence 344558899999999999999 99999999874
No 167
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.09 E-value=10 Score=34.58 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.3
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.|..++|+.+|+.+|++..|++++++||..
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 46788889999999999999999999999975
No 168
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.80 E-value=41 Score=29.73 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=46.3
Q ss_pred EEEecCCChhHHHHHHHHh---cCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEEeC
Q 001242 710 LFLKSSSKPIEILRKLNQM---AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1116)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~---~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1116)
+-|+.+.+|.+|...|.+. -|+|++..-.+|. + ..++.+.|+....|.+|+.|..-..
T Consensus 15 ~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~------G---k~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA------G---KILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET------T---EECCTTSBGGGGTCCSSSEEEEEES
T ss_pred EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC------C---EECCCcCcHHHCCCCCCCEEEEEEe
Confidence 4578899999999999998 6899887666652 2 2356678999999999999877654
No 169
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=53.64 E-value=15 Score=31.62 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.8
Q ss_pred eEEEEeccccHHHHHHHHHHH---hCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKE---FGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|++.|++. .|++++++||..
T Consensus 18 ~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~ 53 (85)
T 2wyq_A 18 FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY 53 (85)
T ss_dssp EEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE
Confidence 357788889999999999998 689999999864
No 170
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=53.58 E-value=13 Score=34.39 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=31.2
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
...|+|.+++++..|++..++..|++++++||+.
T Consensus 38 ~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF 71 (110)
T 2k8h_A 38 EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF 71 (110)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 3578999999999999999999999999999875
No 171
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=53.32 E-value=22 Score=32.82 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=48.7
Q ss_pred ecchhhc-cCCCCCeEEEEEEeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCC
Q 001242 981 EIPEEEK-NLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGR 1059 (1116)
Q Consensus 981 ~iP~ee~-~~~~~~~li~V~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~ 1059 (1116)
.+|+++- ...++...|.|-+-..... + ...+-|-.|.+.|.+..|+.++|++|+++.|++.. +.|+ +..+
T Consensus 12 l~~e~~~l~~~~~~i~l~V~~p~~~~~-~--~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~QrL--~~~G- 82 (115)
T 1we7_A 12 LMPEEEFLRRNKGPVSIKVQVPNMQDK-T--EWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAG---KQKL--QYEG- 82 (115)
T ss_dssp CCCHHHHHHHCCSCEEEEEEECCCSSS-C--SSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTT---TEEE--EETT-
T ss_pred cCCHHHHHHhCCCCEEEEEEcCCCccc-c--ccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChH---HEEE--EECC-
Confidence 4565542 2334667777765432210 0 01244889999999999999999999999999853 3443 2233
Q ss_pred cccccCcc
Q 001242 1060 PEYLVDTD 1067 (1116)
Q Consensus 1060 ~~~~~~~~ 1067 (1116)
+.|+|+.
T Consensus 83 -k~L~D~~ 89 (115)
T 1we7_A 83 -IFIKDSN 89 (115)
T ss_dssp -EEECTTS
T ss_pred -EECCCCC
Confidence 3466654
No 172
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.84 E-value=31 Score=30.58 Aligned_cols=80 Identities=11% Similarity=-0.010 Sum_probs=57.2
Q ss_pred cEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeec-cCCcCCccccccCCC
Q 001242 689 DILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCE-HLDKRTSFRLSQIED 767 (1116)
Q Consensus 689 ~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie-~i~~~~t~~~~el~~ 767 (1116)
++-|+++.=.. . ..-.+-++.+.+|.+|...|.++.|+|++..-.+|..- ++..+. .++...++....|++
T Consensus 7 ~v~l~I~~~~~--~---~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~---~g~~~~~l~~D~~tL~~y~i~~ 78 (95)
T 1v6e_A 7 GVMVFISSSLN--S---FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGA---DDKFYSKLDQEDALLGSYPVDD 78 (95)
T ss_dssp CEEEEEEETTS--S---SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECS---SSCEEEECCCSSSBTTSSSCCT
T ss_pred EEEEEEEECCC--C---eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCC---CCccccccCCCcCCHhHCCCCC
Confidence 36777776211 1 22446788999999999999999999999876666531 111222 346788999999999
Q ss_pred CCEEEEEeC
Q 001242 768 GDIICFQKS 776 (1116)
Q Consensus 768 GDIi~fQ~~ 776 (1116)
|+.|..-..
T Consensus 79 g~~l~v~d~ 87 (95)
T 1v6e_A 79 GCRIHVIDH 87 (95)
T ss_dssp TCEEEEBCC
T ss_pred CCEEEEEEC
Confidence 999887643
No 173
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=52.79 E-value=31 Score=31.54 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=29.8
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcccc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEF 1047 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f 1047 (1116)
+.++-+.|.+..|+.++|++|.++.|+|...-
T Consensus 36 ~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 36 TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred CceEEEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 78999999999999999999999999998654
No 174
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=52.35 E-value=8.2 Score=34.09 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=25.1
Q ss_pred ccccHHHHHHHH-HHHhCCCCcceeEEE
Q 001242 600 KQTSFMAFKEEI-AKEFGIPIQLQRFWI 626 (1116)
Q Consensus 600 ~~~~~~~~~~~i-~~~~~~~~~~~r~w~ 626 (1116)
.++|+.+|+++| ++..|+|++++||+.
T Consensus 22 ~~~TV~~lK~~I~~~~~gip~~~QrLi~ 49 (87)
T 2lxa_A 22 PSDTILQIKQHLISEEKASHISEIKLLL 49 (87)
T ss_dssp TTCBHHHHHHHHHHTTSCSSSTTEEEEE
T ss_pred CCCcHHHHHHHHHHHhcCCChHHEEEEE
Confidence 788999999999 888899999999985
No 175
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=52.18 E-value=14 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.|..++|+.+|++.|++..|++++++||..
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 457888899999999999999999999999875
No 176
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.15 E-value=15 Score=34.33 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=44.6
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEeee
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVE 672 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 672 (1116)
..++.+..++|+.+|++.+++.+++|++++||-. ++. .|.+ +.||++.. -.+...++|+..
T Consensus 28 k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-----~GK-----iLKD---~eTL~~~g------Ik~g~TIhLvi~ 88 (118)
T 2daf_A 28 EIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-----SGK-----ILKN---NETLVQHG------VKPQEIVQVEIF 88 (118)
T ss_dssp EEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-----TTE-----EECS---SCCHHHHS------CCSSCEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-----CCe-----EcCC---cchHHHcC------CCCCCEEEEEEe
Confidence 3456778889999999999999999999999754 222 2433 34777643 114678888886
Q ss_pred c
Q 001242 673 F 673 (1116)
Q Consensus 673 ~ 673 (1116)
.
T Consensus 89 s 89 (118)
T 2daf_A 89 S 89 (118)
T ss_dssp E
T ss_pred c
Confidence 5
No 177
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.42 E-value=33 Score=30.41 Aligned_cols=74 Identities=9% Similarity=-0.013 Sum_probs=55.6
Q ss_pred CCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcC-CccccccC
Q 001242 687 KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKR-TSFRLSQI 765 (1116)
Q Consensus 687 ~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~-~t~~~~el 765 (1116)
...+-||+|.-. .+ -.+-|+.+.+|.+|...|.+..|+|++..-.+|. + ..++.+ .|+....|
T Consensus 13 ~~~~~I~Vk~~~---~~----~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~~tL~~ygI 76 (94)
T 2kan_A 13 VRKIHVTVKFPS---KQ----FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS------G---IELADDYRNLNEYGI 76 (94)
T ss_dssp SCCEEEEEECSS---CE----EEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET------T---EEECCTTSBHHHHTC
T ss_pred CCCEEEEEEcCC---cE----EEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC------C---EECCCCcccHHHCCC
Confidence 345889998732 22 2456889999999999999999999887766553 2 234556 89999999
Q ss_pred CCCCEEEEEeC
Q 001242 766 EDGDIICFQKS 776 (1116)
Q Consensus 766 ~~GDIi~fQ~~ 776 (1116)
.+|+.|..-..
T Consensus 77 ~~gstl~lv~r 87 (94)
T 2kan_A 77 TEFSEIVVFLK 87 (94)
T ss_dssp CTTEEEEEEEC
T ss_pred CCCCEEEEEEe
Confidence 99998876544
No 178
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=51.35 E-value=9.2 Score=33.78 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=26.5
Q ss_pred CccEEE-EecCCCCHHHHHHHHHHHhCCCc
Q 001242 1016 GEPFFL-VIHEGETLAEVKERIQRKLQVLD 1044 (1116)
Q Consensus 1016 G~PF~~-~v~~~E~~~~~k~Rl~~rl~~~~ 1044 (1116)
|-+|.+ .|.+.+|+.++|++|++++||+.
T Consensus 16 g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 16 GQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp TEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 677778 89999999999999999999985
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.08 E-value=13 Score=33.91 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
...|+|.+++++..|++..++..|++++.+||+.
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F 69 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 3578999999999999999999999999999976
No 180
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=50.54 E-value=8.8 Score=35.12 Aligned_cols=32 Identities=6% Similarity=0.169 Sum_probs=28.4
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.|..++|+.+|+.+|++..|++++++||..
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 46 (106)
T 3m62_B 15 PLDLEPSNTILETKTKLAQSISCEESQIKLIY 46 (106)
T ss_dssp EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 45677788999999999999999999999865
No 181
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=50.44 E-value=40 Score=30.78 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=47.5
Q ss_pred EEEec-CCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEEeC
Q 001242 710 LFLKS-SSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1116)
Q Consensus 710 ~~v~~-~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1116)
+-|+. +.+|.+|...|.+..|+|++..-.+|. + ..++...|+....|.+|+.|..-..
T Consensus 45 l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~------G---k~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 45 ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK------A---GFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS------S---SBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC------C---EECCCCCcHHHCCCCCCCEEEEEEE
Confidence 56786 999999999999999999987766662 2 2466788999999999999887654
No 182
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=50.02 E-value=15 Score=33.80 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=29.6
Q ss_pred eEEEEec-cccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQK-QTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+.. ++|+.+|+++|++..|+|++++||..
T Consensus 43 ~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~ 76 (111)
T 1we6_A 43 MEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG 76 (111)
T ss_dssp EEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC
T ss_pred EEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE
Confidence 4578886 89999999999999999999999864
No 183
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.93 E-value=13 Score=33.68 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=27.3
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~ 1045 (1116)
|-.+-+.|.+..|+.++|++|++++||+..
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~ 47 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVS 47 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTT
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 667778999999999999999999999974
No 184
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=49.60 E-value=21 Score=32.62 Aligned_cols=79 Identities=9% Similarity=0.120 Sum_probs=52.7
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEe-cCCChhHHHHHHHHhcCCCCCCcEEEEEEe----ecCcc---eeeccCCcCCccc
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLK-SSSKPIEILRKLNQMAGFDPDEEIELYEEI----KFEPC---VMCEHLDKRTSFR 761 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~-~~~~v~~l~~~i~~~~g~p~dt~l~lyEEi----k~~p~---~~ie~i~~~~t~~ 761 (1116)
++|++|-=+- .-.+-|. .+.+|.+|...|.+..|+|++..-..|.-- | .|. .+...++...|+.
T Consensus 8 M~irvrs~~G-------~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k-~~~~~~~l~~~l~d~~tL~ 79 (107)
T 1wf9_A 8 TMLRVRSRDG-------LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAK-SPSDFLAFTDMADPNLRIS 79 (107)
T ss_dssp EEEEEECSSC-------EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCC-SHHHHTTCCSSCCTTCBGG
T ss_pred EEEEEECCCC-------CEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCcccccc-CccccccccccCCCCCCHH
Confidence 7788874322 1234577 889999999999999999988653322110 0 011 0111146788999
Q ss_pred cccCCCCCEEEEEeC
Q 001242 762 LSQIEDGDIICFQKS 776 (1116)
Q Consensus 762 ~~el~~GDIi~fQ~~ 776 (1116)
...|++||.|.+-..
T Consensus 80 ~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 80 SLNLAHGSMVYLAYE 94 (107)
T ss_dssp GTCCCTTCEEECCCS
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999988655
No 185
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=49.35 E-value=12 Score=33.91 Aligned_cols=69 Identities=13% Similarity=0.239 Sum_probs=51.3
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+.|++|. .- +++ .+-|..+.+|.+|...|.++.|+|++..-.+|. + ..++.+.++....|++|+
T Consensus 29 i~I~Vk~-~g--~~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~~gI~~g~ 92 (101)
T 3m63_B 29 LNIHIKS-GQ--DKW----EVNVAPESTVLQFKEAINKANGIPVANQRLIYS------G---KILKDDQTVESYHIQDGH 92 (101)
T ss_dssp CCEEEEC-SS--CCC----CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET------T---EECCTTSBTTTTTCCTTE
T ss_pred EEEEEEE-CC--EEE----EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC------C---EECCCcCcHHHCCCCCCC
Confidence 5667774 22 222 235678899999999999999999987766652 2 245678899999999999
Q ss_pred EEEEE
Q 001242 770 IICFQ 774 (1116)
Q Consensus 770 Ii~fQ 774 (1116)
.|..-
T Consensus 93 tI~lv 97 (101)
T 3m63_B 93 SVHLV 97 (101)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 98764
No 186
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.34 E-value=14 Score=33.03 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=33.3
Q ss_pred CccE-EEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCc
Q 001242 1016 GEPF-FLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDT 1066 (1116)
Q Consensus 1016 G~PF-~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~ 1066 (1116)
|.+| -+.|.+.+|+.++|++|++++||+. ++.|+- . +++-|.|+
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~---~~QkLi--~--~Gk~L~D~ 60 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQP---ARQKVM--V--KGGTLKDD 60 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCT---TTSCCE--E--TTEECCSS
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCH---HHeEEE--E--CCcCCCCC
Confidence 7788 4999999999999999999999985 344432 2 33446665
No 187
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=46.82 E-value=13 Score=34.07 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.4
Q ss_pred EEEEe-ccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQ-KQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.|. .++|+.+|+++|++.+|++++++||..
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 46677 789999999999999999999999864
No 188
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.71 E-value=19 Score=32.03 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=28.4
Q ss_pred eEEEEeccccHHHHHHHHHHH---hCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKE---FGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|++.|++. .|++++++||..
T Consensus 13 ~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 13 FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 356777889999999999998 689999999864
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=46.57 E-value=19 Score=37.02 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=33.5
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeec
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKR 630 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~ 630 (1116)
...|+|.+++++..|++..++..|++++++|||.=..|
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~r 77 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 77 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEE
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEE
Confidence 45789999999999999999999999999999984433
No 190
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=46.37 E-value=16 Score=32.72 Aligned_cols=36 Identities=6% Similarity=0.130 Sum_probs=32.3
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
...|+|.+++.+..|.+..|+..|++++.+||..=.
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG 67 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGE 67 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETT
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECC
Confidence 457899999999999999999999999999987633
No 191
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=45.80 E-value=32 Score=35.50 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccC
Q 001242 686 SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQI 765 (1116)
Q Consensus 686 ~~~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el 765 (1116)
.+++|-|.++ + .... -++-|.++++++.|+...+++.|+|.++---+|.= .+|..+.|....++
T Consensus 18 ~~~~i~ikv~--~-~~~~----v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG---------~~i~~~~Tpk~L~~ 81 (209)
T 3uf8_A 18 PETHINLKVS--D-GSSE----IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDM 81 (209)
T ss_dssp CCSEEEEEEE--C-SSCE----EEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETT---------EECCTTCCTTTTTC
T ss_pred CCCcEEEEEE--c-CCCE----EEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECC---------EeccCCCChHHhhh
Confidence 3455666665 4 3333 35788999999999999999999998766555531 45777888889999
Q ss_pred CCCCEEEEE
Q 001242 766 EDGDIICFQ 774 (1116)
Q Consensus 766 ~~GDIi~fQ 774 (1116)
.+||+|=.=
T Consensus 82 ed~d~I~~~ 90 (209)
T 3uf8_A 82 EDNDIIEAH 90 (209)
T ss_dssp CTTEEEEEE
T ss_pred cccccchhh
Confidence 999998443
No 192
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.56 E-value=37 Score=29.82 Aligned_cols=73 Identities=8% Similarity=0.056 Sum_probs=53.1
Q ss_pred EEEEEEeecCCCCeEEEEeEE-EEecCCChhHHHHHHHHh-cCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRL-FLKSSSKPIEILRKLNQM-AGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~-~v~~~~~v~~l~~~i~~~-~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
+-||+|--...+. ++.+ -|..+++|.+|...|.+. -|+|++..-..|.. . + ..++...|+....|.+
T Consensus 11 M~I~Vk~~~g~~~----~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~---~-G---k~L~D~~tL~~y~i~~ 79 (88)
T 2dzj_A 11 YEVEILDAKTREK----LCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP---K-G---KSLKDEDVLQKLPVGT 79 (88)
T ss_dssp EEEEEEESSSCCC----CEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST---T-S---CCCCTTCBTTTSSCCS
T ss_pred EEEEEECCCCCEE----eeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC---C-C---cCcCCCCCHHHcCCCC
Confidence 5577775433332 2556 789999999999999994 79998866544431 1 2 2567788999999999
Q ss_pred CCEEEE
Q 001242 768 GDIICF 773 (1116)
Q Consensus 768 GDIi~f 773 (1116)
|+.|.|
T Consensus 80 ~stl~~ 85 (88)
T 2dzj_A 80 TATLYF 85 (88)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999887
No 193
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.16 E-value=99 Score=26.86 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=54.3
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecC-----CChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCc-CCccc
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSS-----SKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDK-RTSFR 761 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~-----~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~-~~t~~ 761 (1116)
..+-|++|. . .++. .+-|+.+ .+|.+|...|.+..|+|++..-.+|. +. .++. ..++.
T Consensus 6 ~~~~v~Vk~-~--~~~~----~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~------Gk---~L~D~~~~L~ 69 (92)
T 1wxv_A 6 SGLTVTVTH-S--NEKH----DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK------GK---SLKEMETPLS 69 (92)
T ss_dssp SSEEEEEEC-S--SSEE----EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET------TE---EECCSSSBHH
T ss_pred CeEEEEEEE-C--CEEE----EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC------Ce---ecCCCcccHH
Confidence 347888887 2 3333 3567774 99999999999999999887766653 21 2334 66888
Q ss_pred cccCCCCCEEEEEeCC
Q 001242 762 LSQIEDGDIICFQKSP 777 (1116)
Q Consensus 762 ~~el~~GDIi~fQ~~~ 777 (1116)
...|.+|+.|..-...
T Consensus 70 ~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 70 ALGIQDGCRVMLIGKK 85 (92)
T ss_dssp HHTCCSSEEEEEESCC
T ss_pred HCCCCCCCEEEEEecC
Confidence 8899999999887653
No 194
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=43.27 E-value=29 Score=35.33 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=55.5
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-||+|..+-. ++ .+-|..+++|.+|...|.+..|+|++..-.+|. + ..++...|+....|++|+
T Consensus 106 MqI~VKtl~Gk--t~----~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~------G---k~L~D~~tL~dygI~~gs 170 (189)
T 3q3f_A 106 GQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKES 170 (189)
T ss_dssp EEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET------T---EECCTTCBGGGGTCCTTC
T ss_pred eeeeeecCCCC--EE----EEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC------C---EECCCCCCHHHCCCCCCC
Confidence 78899876533 22 246789999999999999999999886655542 2 346678899999999999
Q ss_pred EEEEEeC
Q 001242 770 IICFQKS 776 (1116)
Q Consensus 770 Ii~fQ~~ 776 (1116)
.|-.-..
T Consensus 171 tI~Lvlr 177 (189)
T 3q3f_A 171 TLHLVLR 177 (189)
T ss_dssp EEEECCC
T ss_pred EEEEEEE
Confidence 9877544
No 195
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=43.00 E-value=35 Score=29.70 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=42.6
Q ss_pred EEEecCCChhHHHHHHHHhcCCCCCCcEE-EEEEeecCcceeeccCCcCCccccccCCCCCEEE
Q 001242 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIE-LYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIIC 772 (1116)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~-lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~ 772 (1116)
+.+|..-++..|+..+.+..+++.. +.. .+=-+. +++ -.+..+.++....+.+||+|.
T Consensus 21 LRIP~~~tvK~Li~~l~ea~~l~~~-~~~~~~irv~-NK~---~~L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 21 LRLSDYHPVKKVIDIAWQAQSVSMP-PREGHWIRVV-NKD---KVFSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp EEEETTSBTTHHHHHHHHHSCCCSC-CCTTCEEEEG-GGT---EEEETTSBTGGGTCCTTCEEE
T ss_pred EECCCchhHHHHHHHHHHHhCCCcC-CCCCCEEEEe-cCC---EEEcCCCEEeeCCcCCCCEEE
Confidence 4589999999999999999999842 112 333332 222 246778888888999999985
No 196
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.90 E-value=20 Score=31.55 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=27.4
Q ss_pred EE-EEeccccHHHHHHHHHHH-hCCCCcceeEE
Q 001242 595 SF-RVQKQTSFMAFKEEIAKE-FGIPIQLQRFW 625 (1116)
Q Consensus 595 ~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~r~w 625 (1116)
++ .|..++|+.+|++.|++. -|++++++||-
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~ 58 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR 58 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE
Confidence 46 788899999999999996 69999999984
No 197
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=42.78 E-value=20 Score=35.68 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.6
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.+..++|+.+|+++|++..|+|++++||..
T Consensus 13 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (169)
T 3l0w_B 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (169)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 356788889999999999999999999999875
No 198
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=42.63 E-value=19 Score=32.56 Aligned_cols=30 Identities=10% Similarity=0.227 Sum_probs=26.2
Q ss_pred EEeccccHHHHHHHH-HHHhCCCCcceeEEE
Q 001242 597 RVQKQTSFMAFKEEI-AKEFGIPIQLQRFWI 626 (1116)
Q Consensus 597 ~~~~~~~~~~~~~~i-~~~~~~~~~~~r~w~ 626 (1116)
.+..+.|+.+|+++| ++..|++++++||..
T Consensus 37 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~ 67 (98)
T 4a20_A 37 DFSPSDTILQIKQHLISEEKASHISEIKLLL 67 (98)
T ss_dssp EECTTCBHHHHHHHHHHTTSCSCGGGEEEEE
T ss_pred ecCCCChHHHHHHHHHHHhcCCChhhEEEEE
Confidence 455889999999999 777799999999875
No 199
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=42.36 E-value=42 Score=31.21 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=32.2
Q ss_pred EEEcCCCCCHHHHHHHHHhhccCCC-CCccEEEEEEe
Q 001242 918 NIRLPKQSTVGDVINELKTKVELSH-PNAELRLLEVF 953 (1116)
Q Consensus 918 ~~~v~k~~tv~dll~~l~~~~~~~~-~~~~lrl~~i~ 953 (1116)
+|++.++.|..+|+.++.++++++. ......|.+|.
T Consensus 27 svlvt~~tta~~vV~eaLekygL~~~~~~~Y~LveV~ 63 (116)
T 1wxa_A 27 TILLSTTDTADFAVAESLEKYGLEKENPKDYCIARVM 63 (116)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTCSSSCTTTEEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCchheEEEEEE
Confidence 7899999999999999999999986 35679999985
No 200
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.99 E-value=59 Score=29.43 Aligned_cols=72 Identities=8% Similarity=0.052 Sum_probs=53.8
Q ss_pred EEEEEeecCC----CCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCC
Q 001242 691 LLFFKLYDPE----KGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIE 766 (1116)
Q Consensus 691 llFlK~fDp~----~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~ 766 (1116)
+.-|+.+-+. .+++ .+-|..+++|.+|...|.+..|+|++..-.+|. + ..++...|+....|+
T Consensus 15 ~ati~V~~~~~~~~~~~~----~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~------G---KiL~D~~TL~~y~I~ 81 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKN----LLETRLHITGRELRSKIAETFGLQENYIKIVIN------K---KQLQLGKTLEEQGVA 81 (100)
T ss_dssp EEEEEEECCTTTCCSSSE----EEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET------T---EECCTTSBHHHHTCC
T ss_pred eEEEEEEecCCCCCCcEE----EEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC------C---eECCCCCcHHHcCCC
Confidence 4455555555 2332 456889999999999999999999987766554 2 236778999999999
Q ss_pred CCCEEEEEe
Q 001242 767 DGDIICFQK 775 (1116)
Q Consensus 767 ~GDIi~fQ~ 775 (1116)
+|..|.+=+
T Consensus 82 ~gsti~vl~ 90 (100)
T 1wju_A 82 HNVKAMVLE 90 (100)
T ss_dssp SSEEEEEEC
T ss_pred CCCEEEEEE
Confidence 999776543
No 201
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=40.80 E-value=27 Score=30.54 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=24.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001242 1019 FFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1116)
Q Consensus 1019 F~~~v~~~E~~~~~k~Rl~~rl~~~~~~ 1046 (1116)
+.++|.+|-+|++++++|.+||+++..+
T Consensus 16 vairvp~~~~y~~L~~~l~~kL~l~~~~ 43 (83)
T 1oey_A 16 VVMKTQPGLPYSQVRDMVSKKLELRLEH 43 (83)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcce
Confidence 5688999999999999999999998544
No 202
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=40.50 E-value=29 Score=30.90 Aligned_cols=33 Identities=6% Similarity=0.182 Sum_probs=30.2
Q ss_pred EEEEecCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1116)
.+.|+.+.++++++..|++++++++++.|-+|=
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyV 55 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYV 55 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 466999999999999999999999999999984
No 203
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=46.58 E-value=5.9 Score=33.46 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.+.+..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 45677788999999999999999999999854
No 204
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=39.15 E-value=31 Score=31.09 Aligned_cols=34 Identities=6% Similarity=0.241 Sum_probs=31.4
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
...|+|.+++++..|....++..|++++.+||+.
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F 71 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF 71 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 3578999999999999999999999999999987
No 205
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=38.99 E-value=41 Score=33.44 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=53.9
Q ss_pred EEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEE
Q 001242 692 LFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDII 771 (1116)
Q Consensus 692 lFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi 771 (1116)
||+|..+-. ++ .+-|..+++|.+|...|.++.|+|++..-.+|. + ..++...|+....|++|+.|
T Consensus 3 I~Vk~~~Gk--~~----~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~------G---k~L~D~~tL~~y~I~~gstI 67 (169)
T 3l0w_B 3 IFVKTLTGK--TI----TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQKESTL 67 (169)
T ss_dssp EEEEETTSC--EE----EEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET------T---EECCTTSBGGGGTCCTTCEE
T ss_pred EEEEeCCCC--EE----EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC------C---ccccCcCcHHHcCCCCCCEE
Confidence 666655432 22 245788999999999999999999987766652 2 24677889999999999998
Q ss_pred EEEeCC
Q 001242 772 CFQKSP 777 (1116)
Q Consensus 772 ~fQ~~~ 777 (1116)
-.-...
T Consensus 68 ~Lvlrl 73 (169)
T 3l0w_B 68 HLVLRL 73 (169)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 887653
No 206
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=45.11 E-value=6.4 Score=33.22 Aligned_cols=30 Identities=13% Similarity=0.250 Sum_probs=27.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~ 1045 (1116)
|..|.+.+.+..|+.++|++|++++|++..
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 39 (76)
T 3b1l_X 10 SYGFPVEVDSDTSILQLKEVVAKQQGVPAD 39 (76)
Confidence 778889999999999999999999999854
No 207
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=37.61 E-value=15 Score=32.05 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.2
Q ss_pred EeccccHHHHHHHHHHHhCCCCcceeEE
Q 001242 598 VQKQTSFMAFKEEIAKEFGIPIQLQRFW 625 (1116)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~~~~~~~r~w 625 (1116)
+..++|+.+|++.|++..|++++++||.
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~ 44 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRIL 44 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCE
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEE
Confidence 5567899999999999999999999984
No 208
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=36.47 E-value=29 Score=32.51 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=33.0
Q ss_pred ccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCccc
Q 001242 1017 EPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDT 1068 (1116)
Q Consensus 1017 ~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~~~ 1068 (1116)
.-+.+.|.+.+|+.++|++|+.+.||+.... | |+..++ -|+|+.-
T Consensus 12 tti~lev~~sdTV~~lK~kI~~~egIP~~qQ---r--Li~~Gk--~LeD~~T 56 (118)
T 2fnj_B 12 TTIFTDAKESSTVFELKRIVEGILKRPPEEQ---R--LYKDDQ--LLDDGKT 56 (118)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHCCCGGGE---E--EEETTE--ECCTTSB
T ss_pred EEEEEEeCCcChHHHHHHHHHHHhCCCHHHe---E--EEECCe--ECCCCCC
Confidence 3467899999999999999999999987543 3 334444 3555543
No 209
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=36.03 E-value=35 Score=30.75 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=26.4
Q ss_pred EEEEeccccHHHHHHHHHHHh-CCC-CcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEF-GIP-IQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~-~~~-~~~~r~w~ 626 (1116)
++.+..++|+.+|+++|++.+ |.+ ++++||..
T Consensus 39 ~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy 72 (99)
T 2kdb_A 39 TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY 72 (99)
T ss_dssp EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE
T ss_pred EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE
Confidence 677788999999999999876 444 59999864
No 210
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=34.86 E-value=36 Score=34.56 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=32.5
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEe
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWA 628 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~ 628 (1116)
...|+|.+++++..|++..++..|++++.+||+.=.
T Consensus 68 eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDG 103 (207)
T 3tix_A 68 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDG 103 (207)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETT
T ss_pred EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECC
Confidence 457899999999999999999999999999998743
No 211
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=34.57 E-value=44 Score=31.25 Aligned_cols=33 Identities=6% Similarity=0.181 Sum_probs=29.8
Q ss_pred EEEEecCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1116)
.+.|+.+.+|++++..|++++++++++.|-||-
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 455999999999999999999999999998883
No 212
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=34.41 E-value=8.4 Score=39.67 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred eEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEE
Q 001242 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQ 774 (1116)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ 774 (1116)
-++-|.++.+++.|+...+++.|++++.---+|.- ..|.++.|....++.|||+|=+-
T Consensus 33 V~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDG---------qRI~dddTPadL~MEDGDtIDV~ 90 (227)
T 3v7o_A 33 IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDG---------IRIQADQTPEDLDMEDNDIIEAH 90 (227)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEccCChHHHHHHHHHHHhCCCccceEEEECC---------EecCCCCCHHHcCCCCCCEEEEE
Confidence 35668899999999999999999997644444442 45778899999999999977543
No 213
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=34.37 E-value=49 Score=28.54 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=35.8
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCc-ceeEEEEeecCCCcCCCCCCCC
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQ-LQRFWIWAKRQNHTYRPNRPLL 642 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~r~w~~~~~~n~~~rp~~~~~ 642 (1116)
..++|+.++++.++...-++..|++++ .+||-.= +-.++|+..+.
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD----GdRLdp~~tp~ 67 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE----GEWLDPNDQVQ 67 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET----TEECCTTSBGG
T ss_pred eEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc----CcccCccCChh
Confidence 468999999999999999999999999 7998652 33456666543
No 214
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.50 E-value=35 Score=29.98 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=32.6
Q ss_pred cEEEEecCCCCHHHHHHHHHHHh--CCCccccceeEEEEEecCCcccccCcccc
Q 001242 1018 PFFLVIHEGETLAEVKERIQRKL--QVLDEEFSKWKFAFLSLGRPEYLVDTDTV 1069 (1116)
Q Consensus 1018 PF~~~v~~~E~~~~~k~Rl~~rl--~~~~~~f~k~kfai~~~~~~~~~~~~~~~ 1069 (1116)
+|-+.+.+.+|+.++|++|++++ |++.. +.|+ +.. ++.|+|+..+
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~---~QrL--i~~--Gk~L~D~~tL 67 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPE---DQRL--IYS--GKLLLDHQCL 67 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTT---TCEE--EET--TEECCSSSCH
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChH---HeEE--EEC--CEECcCcCCH
Confidence 67777889999999999999999 98753 4443 333 3457666443
No 215
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.91 E-value=1.8e+02 Score=25.24 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=51.0
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcC-CccccccCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKR-TSFRLSQIE 766 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~-~t~~~~el~ 766 (1116)
..+-||+|..+-. . -.+-|..+.+|.+|...|.+.. +....|. |. + ..++.+ .++....|.
T Consensus 6 ~~m~i~Vk~~~g~--~----~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi-~~------G---k~L~D~~~tL~~y~i~ 67 (95)
T 1wia_A 6 SGINVRLKFLNDT--E----ELAVARPEDTVGTLKSKYFPGQ--ESQMKLI-YQ------G---RLLQDPARTLSSLNIT 67 (95)
T ss_dssp CSEEEEEEETTTE--E----EEEEECSSSBHHHHHHHHSSST--TTTCEEE-ET------T---EECCCSSCBTTTTTCC
T ss_pred CeEEEEEEeCCCC--E----EEEEECCCCcHHHHHHHHHhhC--cCcEEEE-EC------C---EEccCCcCCHHHcCCC
Confidence 4478899865432 2 1356889999999999999887 5444443 31 2 245556 899999999
Q ss_pred CCCEEEEEeCC
Q 001242 767 DGDIICFQKSP 777 (1116)
Q Consensus 767 ~GDIi~fQ~~~ 777 (1116)
+|+.|.+-...
T Consensus 68 ~g~~i~l~~~~ 78 (95)
T 1wia_A 68 NNCVIHCHRSP 78 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCCEEEEEECC
Confidence 99999887653
No 216
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=32.36 E-value=37 Score=34.53 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=28.7
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~ 1046 (1116)
|-.|.+.|.+.+|+.++|++|+++.|++..+
T Consensus 115 Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~ 145 (189)
T 3q3f_A 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 145 (189)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCEEEEEeCCCCcHHHHHHHHHhccCCCHHH
Confidence 8889999999999999999999999998754
No 217
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=32.35 E-value=9.5 Score=37.49 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEEeC
Q 001242 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1116)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1116)
+-|+.+++|.+|...|.+..|+|++..-.+|.- ..++...|+....|++|+.|..-..
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECC---------EEccccCcHHHcCCCCCCEEEEEee
Confidence 457788999999999999999999877666532 2356678999999999998877644
No 218
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=32.28 E-value=81 Score=29.69 Aligned_cols=61 Identities=10% Similarity=0.190 Sum_probs=42.6
Q ss_pred eEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHHhhc------cCCCCCccEEEEEEeccEEEEecCCcccccc
Q 001242 901 NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKV------ELSHPNAELRLLEVFYHKIYKIFAPNEKIEN 969 (1116)
Q Consensus 901 ~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~------~~~~~~~~lrl~~i~~~ki~~~~~~~~~i~~ 969 (1116)
+|+|++....-+ .+.|-++.+.||.+|.+.++... +++.....+|| |++||+ +..+..+.+
T Consensus 17 ~m~I~vktl~G~---~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrL--Iy~GK~---LeD~~TL~~ 83 (125)
T 2gow_A 17 MINLRLILVSGK---TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRL--IYQGRF---LHGNVTLGA 83 (125)
T ss_dssp CEEEEEECTTSC---EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEE--ESSSSE---EESSCBTGG
T ss_pred eEEEEEEeCCCC---EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEE--EECCcC---CCCCCcHHH
Confidence 467777654333 56888999999999999999844 33223457888 788875 456666664
No 219
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=31.25 E-value=46 Score=31.40 Aligned_cols=33 Identities=6% Similarity=0.176 Sum_probs=29.9
Q ss_pred EEEEecCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1116)
.+.|+.+.+|++++..|++++++++++.|-||-
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 456999999999999999999999999998873
No 220
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=31.17 E-value=24 Score=31.07 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.0
Q ss_pred CccEEEEec--CCCCHHHHHHHH-HHHhCCCccccceeEEEEEecCCcccccCcccc
Q 001242 1016 GEPFFLVIH--EGETLAEVKERI-QRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTV 1069 (1116)
Q Consensus 1016 G~PF~~~v~--~~E~~~~~k~Rl-~~rl~~~~~~f~k~kfai~~~~~~~~~~~~~~~ 1069 (1116)
|.-|.+.|. +.+|+.++|++| +++.|+|..+ .| |+..+ +-|.|+..+
T Consensus 11 g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~---Qr--Li~~G--k~L~D~~tL 60 (87)
T 2lxa_A 11 APKFSIEHDFSPSDTILQIKQHLISEEKASHISE---IK--LLLKG--KVLHDNLFL 60 (87)
T ss_dssp SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTT---EE--EEETT--EECCTTCBH
T ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHH---EE--EEECC--EECcCcCCH
Confidence 655777654 999999999999 9999998644 34 33344 446676543
No 221
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=30.94 E-value=66 Score=28.09 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=37.3
Q ss_pred CCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCCCccccCcchHHHhhh
Q 001242 813 EDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLV 875 (1116)
Q Consensus 813 ~~~f~l~ls~~~~Y~~~a~~va~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 875 (1116)
++-|.+.|+..++|.||..+|+.||.++ ...+..+. ..+.... ..+...|...+.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~yk-----de~~g~~--i~sD~dl~~aiq 75 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKL-----FDGSGEE--IKTDSQVSNIIQ 75 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECC-----SSSCCSC--CCSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEec-----CCCCCCc--ccCHHHHHHHHH
Confidence 3579999999999999999999999973 34444444 1222122 334466666663
No 222
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=30.92 E-value=10 Score=35.91 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
++.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (128)
T 3u5e_m 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (128)
T ss_dssp --------------------------------
T ss_pred EEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE
Confidence 45677888999999999999999999999874
No 223
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=30.18 E-value=42 Score=31.34 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=27.0
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEE 1046 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~ 1046 (1116)
..=+.+.+.+.+|+.++|++|+.+.|++...
T Consensus 11 ktTI~ldve~sdTV~~lK~kI~~~~giPp~q 41 (118)
T 4ajy_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPPDE 41 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGG
T ss_pred CEEEEEEcCCCChHHHHHHHHHHHHCCCHHH
Confidence 4456788999999999999999999999754
No 224
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=29.56 E-value=50 Score=30.89 Aligned_cols=33 Identities=9% Similarity=0.248 Sum_probs=30.0
Q ss_pred EEEEecCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1116)
.+.|+.+.+|++++..|+++++++++..|-||=
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 83 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYT 83 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEE
Confidence 456999999999999999999999999998884
No 225
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=29.38 E-value=58 Score=29.12 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=29.8
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.-++-|....|+..|++.|.+..||+++++||-.
T Consensus 25 ~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~ 58 (94)
T 4efo_A 25 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIY 58 (94)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 3457788889999999999999999999999864
No 226
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=28.46 E-value=57 Score=30.02 Aligned_cols=33 Identities=6% Similarity=0.185 Sum_probs=29.4
Q ss_pred eEEEEecCCChhHHHHHHHHhcCCCCCCcEEEE
Q 001242 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELY 740 (1116)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~ly 740 (1116)
..+.|+.+.++++++..|+++++++++..|-||
T Consensus 46 ~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~ 78 (110)
T 2r2q_A 46 RKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFF 78 (110)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEE
T ss_pred eEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEE
Confidence 346789999999999999999999999998775
No 227
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=28.43 E-value=61 Score=33.35 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=37.7
Q ss_pred ceEEEEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCC
Q 001242 593 VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNR 639 (1116)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~ 639 (1116)
...|+|.+++++..|.+..|+..|++++++||-.-..+-+.+..|..
T Consensus 32 ~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~ 78 (209)
T 3uf8_A 32 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPED 78 (209)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTT
T ss_pred EEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHH
Confidence 34689999999999999999999999999999775555454444443
No 228
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.26 E-value=2.1e+02 Score=26.38 Aligned_cols=60 Identities=8% Similarity=0.170 Sum_probs=41.2
Q ss_pred EEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHHhhcc------CCCCCccEEEEEEeccEEEEecCCcccccc
Q 001242 902 LKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVE------LSHPNAELRLLEVFYHKIYKIFAPNEKIEN 969 (1116)
Q Consensus 902 ~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~------~~~~~~~lrl~~i~~~ki~~~~~~~~~i~~ 969 (1116)
|.|++-...- ..+.|-|..+.||.+|.+.++...+ ++-....+|| |+.|| ++..+..|.+
T Consensus 17 m~I~vKtl~G---~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrL--Iy~GK---~LeD~~TL~~ 82 (116)
T 1wgh_A 17 INLRLILVSG---KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRL--IYQGR---FLHGNVTLGA 82 (116)
T ss_dssp EEEEEECSSS---CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEE--EETTE---EECSSCBTTT
T ss_pred EEEEEEeCCC---CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEE--EECCc---CCCCCCcHHH
Confidence 5566654333 2567889999999999999998542 2212457888 78897 4566767765
No 229
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=28.07 E-value=43 Score=36.97 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=29.1
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
++.+..++|+.+|+++|++..|+|++++||..
T Consensus 18 ~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~ 49 (320)
T 3shq_A 18 PVDLTDQDTVEVLRHEIFRKTQVRPERQKLLN 49 (320)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCEETT
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEee
Confidence 46788899999999999999999999999863
No 230
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.04 E-value=45 Score=30.30 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHHh--CCCCcc-eeEEE
Q 001242 601 QTSFMAFKEEIAKEF--GIPIQL-QRFWI 626 (1116)
Q Consensus 601 ~~~~~~~~~~i~~~~--~~~~~~-~r~w~ 626 (1116)
++|+.+|++.|++.. |+++++ +||..
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~ 72 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIY 72 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEE
Confidence 389999999999999 999999 99863
No 231
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=27.94 E-value=35 Score=29.41 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=24.6
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcccc
Q 001242 1019 FFLVIHEGETLAEVKERIQRKLQVLDEEF 1047 (1116)
Q Consensus 1019 F~~~v~~~E~~~~~k~Rl~~rl~~~~~~f 1047 (1116)
|.+.+.+..|+.++++.|+++++++...|
T Consensus 16 ~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~ 44 (80)
T 2pjh_A 16 KRITATKRETAATFLKKVAKEFGFQNNGF 44 (80)
T ss_dssp EECCCCSSCCHHHHHHHHHHHTCCCTTTC
T ss_pred EEEEcCCcChHHHHHHHHHHHcCCCCCcc
Confidence 45667788999999999999999987554
No 232
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=27.54 E-value=13 Score=36.53 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 595 SFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
++.|..++|+.+|++.|++..|+|++++||..
T Consensus 14 ~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (152)
T 3u5c_f 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (152)
T ss_dssp --------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45677888999999999999999999999874
No 233
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=27.49 E-value=2.1e+02 Score=26.87 Aligned_cols=63 Identities=13% Similarity=0.275 Sum_probs=41.8
Q ss_pred ceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHHhhc-----cCCCCCccEEEEEEeccEEEEecCCcccccc
Q 001242 900 KNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKV-----ELSHPNAELRLLEVFYHKIYKIFAPNEKIEN 969 (1116)
Q Consensus 900 k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~-----~~~~~~~~lrl~~i~~~ki~~~~~~~~~i~~ 969 (1116)
-+++|.+-.-..+... .+-++.+.||.+|.+.+.... +.+.+..++|| |++|| ++..+.++++
T Consensus 15 ~~~~i~~kt~~G~~i~--~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrL--Iy~GK---~LeD~~TLsd 82 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIG--PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKL--ISAGK---VLENSKTVKD 82 (126)
T ss_dssp CCEEEEEEETTSCEEE--EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEE--EETTE---ECCTTSBGGG
T ss_pred ccEEEEEEECCCCEEE--eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEE--EECCe---ECcCCCcHHH
Confidence 4556666554444332 467888999999999996544 33322357888 78996 5677777764
No 234
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=27.32 E-value=65 Score=30.61 Aligned_cols=34 Identities=6% Similarity=0.222 Sum_probs=30.2
Q ss_pred eEEEEecCCChhHHHHHHHHhcCCCCCCcEEE-EE
Q 001242 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIEL-YE 741 (1116)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~l-yE 741 (1116)
..+.|+.+.++++++..|+++++++++..|-| |-
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~v 89 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVN 89 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEET
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEE
Confidence 35679999999999999999999999999877 63
No 235
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.21 E-value=49 Score=30.85 Aligned_cols=73 Identities=10% Similarity=0.060 Sum_probs=56.5
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGD 769 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GD 769 (1116)
+-+.+|..-+ .++. .+-+..+.+|.+|...+.+.+|.|++..-.+|.. ..++++.|+.+..+++|.
T Consensus 16 itvkv~l~~~-~~k~----tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~G---------KiLKD~eTL~~~gIk~g~ 81 (118)
T 2daf_A 16 ATVKVVLIPV-GQEI----VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSG---------KILKNNETLVQHGVKPQE 81 (118)
T ss_dssp EEEEEEETTT-CCEE----EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETT---------EEECSSCCHHHHSCCSSC
T ss_pred EEEEEEEcCC-CcEE----EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECC---------eEcCCcchHHHcCCCCCC
Confidence 5555554433 3443 2348899999999999999999999988777753 236789999999999999
Q ss_pred EEEEEeC
Q 001242 770 IICFQKS 776 (1116)
Q Consensus 770 Ii~fQ~~ 776 (1116)
+|=..+.
T Consensus 82 TIhLvi~ 88 (118)
T 2daf_A 82 IVQVEIF 88 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9877765
No 236
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=26.86 E-value=13 Score=35.10 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=0.0
Q ss_pred EEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEEeC
Q 001242 710 LFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKS 776 (1116)
Q Consensus 710 ~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~ 776 (1116)
+-|+.+++|.+|...|.+..|+|++..-.+|.- ..++.+.|+....|.+|+.|..-..
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~G---------k~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAG---------KQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEEECC---------EECCCCCchhhhccCCCCEEEEEEE
Confidence 457788999999999999999998877655532 2356788999999999997765543
No 237
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=26.43 E-value=60 Score=30.24 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=29.7
Q ss_pred eEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEE
Q 001242 708 GRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYE 741 (1116)
Q Consensus 708 g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyE 741 (1116)
..+.|+.+.++++++..|+++++++++..|-||-
T Consensus 47 ~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 47 RKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred eEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 3467899999999999999999999999987753
No 238
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.22 E-value=32 Score=31.43 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=53.2
Q ss_pred EEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCC--------------cEEE-EEEeecCcceeeccC
Q 001242 690 ILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDE--------------EIEL-YEEIKFEPCVMCEHL 754 (1116)
Q Consensus 690 illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt--------------~l~l-yEEik~~p~~~ie~i 754 (1116)
+-||+|-.+-. ++. +.|..+++|.+|-..|.+..|+|++. ...| | .+ ..+
T Consensus 8 M~I~Vk~l~g~--~~~----v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~------~G---k~L 72 (105)
T 1v2y_A 8 MTVRVCKMDGE--VMP----VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS------AG---EKL 72 (105)
T ss_dssp EEEEEECSSSC--EEE----EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES------SS---CEE
T ss_pred EEEEEEecCCC--EEE----EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe------CC---cCc
Confidence 67888765533 222 66899999999999999999988642 1222 3 12 234
Q ss_pred -CcCCccccccCCCCCEEEEEeCC
Q 001242 755 -DKRTSFRLSQIEDGDIICFQKSP 777 (1116)
Q Consensus 755 -~~~~t~~~~el~~GDIi~fQ~~~ 777 (1116)
+...|+....|++|+.|.|=..-
T Consensus 73 ~dD~~tL~dygI~~g~~l~lv~~l 96 (105)
T 1v2y_A 73 TEDRKKLRDYGIRNRDEVSFIKKL 96 (105)
T ss_dssp CCSSSBHHHHTCCSSEEEEEEECS
T ss_pred cCCcCCHHHcCCCCCCEEEEEehh
Confidence 46789999999999999998764
No 239
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=26.21 E-value=85 Score=28.16 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=49.2
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhc-CCCC-CCcEEEEEEeecCcceeeccCCcCCccccc--
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMA-GFDP-DEEIELYEEIKFEPCVMCEHLDKRTSFRLS-- 763 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~-g~p~-dt~l~lyEEik~~p~~~ie~i~~~~t~~~~-- 763 (1116)
..+-||+|..+-....+ .+-|+.+.+|.+|...|.+.. |.|+ +..-.+|. + ..++...|+...
T Consensus 22 ~~m~I~VK~~~g~~~~i----~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~------G---k~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQ----TISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS------G---RLLPDHLQLKDILR 88 (99)
T ss_dssp -CEEEEEECTTSSSCCE----EEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET------T---EEECTTSBTHHHHT
T ss_pred CeEEEEEEcCCCCEEEE----EEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC------C---EECCCCCCHHHHhc
Confidence 45889999765543333 344689999999999999864 5554 54434442 3 235677888877
Q ss_pred cCCCCCEEE
Q 001242 764 QIEDGDIIC 772 (1116)
Q Consensus 764 el~~GDIi~ 772 (1116)
.|++|+.|.
T Consensus 89 ~I~~~~tih 97 (99)
T 2kdb_A 89 KQDEYHMVH 97 (99)
T ss_dssp TTCSEEEEE
T ss_pred CCCCCCEEE
Confidence 899998874
No 240
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.42 E-value=28 Score=31.83 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=27.9
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~ 1045 (1116)
|.-|-+.|.+..|+.++|+.|+++.|++..
T Consensus 17 g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~ 46 (105)
T 1v2y_A 17 GEVMPVVVVQNATVLDLKKAIQRYVQLKQE 46 (105)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 888999999999999999999999998764
No 241
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=25.26 E-value=1.1e+02 Score=33.34 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=55.2
Q ss_pred CcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEEEEeecCcceeeccCCcCCccccccCCC
Q 001242 688 DDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIED 767 (1116)
Q Consensus 688 ~~illFlK~fDp~~~~l~~~g~~~v~~~~~v~~l~~~i~~~~g~p~dt~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~ 767 (1116)
..+-||+|..+-. ++ .+-|+.+.+|.+|...|.++.|+|++..-.+|. + ..++...++....|.+
T Consensus 232 ~~MqI~VKtl~Gk--~~----~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~------G---k~L~D~~TLsdygI~~ 296 (307)
T 3ai5_A 232 GSMQIFVKTLTGK--TI----TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA------G---KQLEDGRTLSDYNIQK 296 (307)
T ss_dssp CCEEEEEECTTSC--EE----EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET------T---EECCTTSBTGGGTCCT
T ss_pred CeEEEEEEeCCCC--EE----EEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC------C---eecCCCCCHHHcCCCC
Confidence 3477888876432 22 356889999999999999999999887766653 2 2356788999999999
Q ss_pred CCEEEEE
Q 001242 768 GDIICFQ 774 (1116)
Q Consensus 768 GDIi~fQ 774 (1116)
|+.|..-
T Consensus 297 gstL~Lv 303 (307)
T 3ai5_A 297 ESTLHLV 303 (307)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9988654
No 242
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=24.94 E-value=68 Score=28.88 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=25.0
Q ss_pred Ccc--EEEEecCCCCHHHHHHHHHHHhCCC
Q 001242 1016 GEP--FFLVIHEGETLAEVKERIQRKLQVL 1043 (1116)
Q Consensus 1016 G~P--F~~~v~~~E~~~~~k~Rl~~rl~~~ 1043 (1116)
+++ |.+.|.++=+|.++.+||++|++++
T Consensus 20 ~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 20 SSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 345 8899999999999999999999985
No 243
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=24.90 E-value=66 Score=28.10 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=25.2
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCC
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVL 1043 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~ 1043 (1116)
+-=|.++|..+=+|.++|++|..|+.+.
T Consensus 21 DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 21 DDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp TCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4458899999999999999999999994
No 244
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=24.56 E-value=60 Score=35.54 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.7
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
..+.|..++|+.+|+++|++..|++++++||..
T Consensus 246 ~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~ 278 (307)
T 3ai5_A 246 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 278 (307)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe
Confidence 357888899999999999999999999999864
No 245
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=24.17 E-value=71 Score=35.24 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=27.9
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCcc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDE 1045 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~ 1045 (1116)
|-.|-+.|.+.+|++++|++|++++||+..
T Consensus 14 g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~ 43 (320)
T 3shq_A 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPE 43 (320)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 888899999999999999999999999873
No 246
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=22.25 E-value=6e+02 Score=28.00 Aligned_cols=111 Identities=12% Similarity=0.282 Sum_probs=76.5
Q ss_pred EEEEecCCChhHHHHHHHHhcCC---CCCCcEEEE--EEeecCcceeeccCCcCCccccccCCCCCEEEEEeCCCCCCcc
Q 001242 709 RLFLKSSSKPIEILRKLNQMAGF---DPDEEIELY--EEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQ 783 (1116)
Q Consensus 709 ~~~v~~~~~v~~l~~~i~~~~g~---p~dt~l~ly--EEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~~~~~~~ 783 (1116)
.+-...+.+|.+....|+++++- -+-.+--|| +| +|..- --++...|+....+++|+.|.|-+..
T Consensus 16 ~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~---~~~~~-~Wl~~~~~l~~y~~~~~~~l~~~~~~------ 85 (371)
T 3ivf_A 16 TMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDD---DPKKG-IWLEAGKALDYYMLRNGDTMEYRKKQ------ 85 (371)
T ss_dssp EEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCS---SGGGC-EECCTTSBGGGGTCCTTCEEEEEECE------
T ss_pred EEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCC---CCCcC-EeccCCCCHHHhCCCCCceeeccCce------
Confidence 34457889999999999998752 122333333 33 13222 33666779999999999999997652
Q ss_pred cCCCCCHHHHHHHHhcceEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHHhCCCCCCceEEec
Q 001242 784 ECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTP 849 (1116)
Q Consensus 784 ~~~y~~~~~yy~~L~nr~~v~f~~~~~~~~~~f~l~ls~~~~Y~~~a~~va~~l~~~~p~~lr~~~ 849 (1116)
+.+.+.- ++.....+.+....+=.++.+.|+++||+.++++-=|+.
T Consensus 86 -----------------~~~~V~l---~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 86 -----------------RPLKIRM---LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp -----------------EEEEEEC---TTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred -----------------eEEEEEC---cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 1222222 233457888899999999999999999997776655554
No 247
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=21.68 E-value=19 Score=36.55 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=0.0
Q ss_pred eEEEEeccccHHHHHHHHHHHhCCCCcceeEEE
Q 001242 594 RSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWI 626 (1116)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~ 626 (1116)
.++.|..++|+.+|++.|++..|+|++++||..
T Consensus 13 itLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf 45 (189)
T 2xzm_9 13 KIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN 45 (189)
T ss_dssp ---------------------------------
T ss_pred EEEEECCcChHHHHHHHHHHHhCcChhHEEEEe
Confidence 346677788999999999999999999999975
No 248
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.65 E-value=97 Score=27.99 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=42.2
Q ss_pred CCChhHHHHHHHHhc--CCCCCC-cEEEEEEeecCcceeeccCCcCCccccccCCCCCEEEEEeCC
Q 001242 715 SSKPIEILRKLNQMA--GFDPDE-EIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777 (1116)
Q Consensus 715 ~~~v~~l~~~i~~~~--g~p~dt-~l~lyEEik~~p~~~ie~i~~~~t~~~~el~~GDIi~fQ~~~ 777 (1116)
+.+|.+|...|.+.. |+|++. .-.+|. + ..++...|+....|.+|+.|..-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~------G---k~L~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYC------G---RKLKDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEET------T---EECCTTCBHHHHTCCTTCEEEEEESS
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEEC------C---eECCCCCcHHHcCCCCCCEEEEEeCC
Confidence 499999999999999 999887 444442 2 23567789999999999998776543
No 249
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.56 E-value=61 Score=28.49 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=31.4
Q ss_pred CccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEecCCcccccCc
Q 001242 1016 GEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDT 1066 (1116)
Q Consensus 1016 G~PF~~~v~~~E~~~~~k~Rl~~rl~~~~~~f~k~kfai~~~~~~~~~~~~ 1066 (1116)
|-.|.+.|.+..|+.++|++|+++. .++.|+ +.. ++.|.|+
T Consensus 17 g~~~~~~v~~~~TV~~LK~~i~~~~------~~~qrL--i~~--Gk~L~D~ 57 (95)
T 1wia_A 17 DTEELAVARPEDTVGTLKSKYFPGQ------ESQMKL--IYQ--GRLLQDP 57 (95)
T ss_dssp TEEEEEEECSSSBHHHHHHHHSSST------TTTCEE--EET--TEECCCS
T ss_pred CCEEEEEECCCCcHHHHHHHHHhhC------cCcEEE--EEC--CEEccCC
Confidence 7788999999999999999999987 444554 333 3457666
No 250
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=21.56 E-value=1.1e+02 Score=27.58 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCHHHHHHHHHHHhCC
Q 001242 813 EDAFCLELSKQHSYDEVVERVARKIGL 839 (1116)
Q Consensus 813 ~~~f~l~ls~~~~Y~~~a~~va~~l~~ 839 (1116)
++-|.|.++..++|++|..+|.++|++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~ 48 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISN 48 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcC
Confidence 346999999999999999999999985
No 251
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=21.44 E-value=93 Score=26.72 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=22.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCC
Q 001242 1019 FFLVIHEGETLAEVKERIQRKLQVL 1043 (1116)
Q Consensus 1019 F~~~v~~~E~~~~~k~Rl~~rl~~~ 1043 (1116)
+.+.|.++=+|.++.+||++||+++
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHccc
Confidence 4578888889999999999999975
No 252
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=21.12 E-value=1.4e+02 Score=25.59 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred EEeccccHHHHHHHHHHHhCCCCcceeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccccceeeEEee
Q 001242 597 RVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEV 671 (1116)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~~~~~~~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 671 (1116)
+...+.|+.+++..|.. .+.+...+.|. +.-|.+.+...+.++||.++. ..+.-.|+||.
T Consensus 23 ~F~~~~tl~~v~~fv~~-~~~~~~~f~L~--------t~fPrk~l~~~d~~~TL~e~g------L~p~a~L~ve~ 82 (84)
T 3qx1_A 23 RFLASNKLQIVFDFVAS-KGFPWDEYKLL--------STFPRRDVTQLDPNKSLLEVK------LFPQETLFLEA 82 (84)
T ss_dssp EEETTSBHHHHHHHHHH-TTCCTTTEEEE--------CSSSCCBGGGSCTTSBTTTTT------CCSEEEEEEEE
T ss_pred EeCCCCCHHHHHHHHHH-cCCCCCCeEEE--------eCCCCCCCcCCCCCCCHHHCC------CCCCCEEEEEe
Done!