Query 001243
Match_columns 1116
No_of_seqs 427 out of 1523
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq6_A Bromodomain-containing 99.6 1.3E-15 4.4E-20 140.5 5.1 71 48-118 9-86 (87)
2 2lq6_A Bromodomain-containing 99.2 1.2E-11 4.2E-16 114.0 4.4 64 822-885 10-84 (87)
3 2ku3_A Bromodomain-containing 98.9 5.7E-10 1.9E-14 99.3 3.0 56 701-756 12-68 (71)
4 2l43_A N-teminal domain from h 98.7 2.7E-09 9.2E-14 98.6 2.6 54 702-755 22-76 (88)
5 1wev_A Riken cDNA 1110020M19; 98.5 1.8E-08 6.3E-13 93.0 1.6 58 700-757 11-75 (88)
6 2yt5_A Metal-response element- 98.5 3.7E-08 1.3E-12 85.7 3.4 52 703-754 4-61 (66)
7 4gne_A Histone-lysine N-methyl 98.4 2.9E-07 1E-11 87.9 6.6 77 702-795 12-96 (107)
8 1xwh_A Autoimmune regulator; P 98.3 4.5E-07 1.6E-11 79.3 4.2 53 700-756 3-57 (66)
9 2yql_A PHD finger protein 21A; 98.2 6E-07 2.1E-11 76.0 3.8 50 700-753 4-55 (56)
10 1mm2_A MI2-beta; PHD, zinc fin 98.2 7.8E-07 2.7E-11 76.7 3.6 49 702-754 6-56 (61)
11 1f62_A Transcription factor WS 98.2 6.8E-07 2.3E-11 74.0 2.9 46 707-753 2-49 (51)
12 2l5u_A Chromodomain-helicase-D 98.1 1.7E-06 5.8E-11 74.6 4.5 51 700-754 6-58 (61)
13 2puy_A PHD finger protein 21A; 98.1 1.3E-06 4.6E-11 74.8 3.3 48 704-755 4-53 (60)
14 2e6r_A Jumonji/ARID domain-con 98.1 1.3E-06 4.4E-11 81.3 3.0 53 701-754 12-66 (92)
15 2lri_C Autoimmune regulator; Z 98.1 2.2E-06 7.4E-11 75.3 4.0 46 705-754 12-59 (66)
16 1fp0_A KAP-1 corepressor; PHD 98.0 4.1E-06 1.4E-10 77.5 5.4 52 699-754 19-72 (88)
17 2ysm_A Myeloid/lymphoid or mix 98.0 7.6E-06 2.6E-10 78.0 6.9 94 703-835 5-103 (111)
18 3v43_A Histone acetyltransfera 97.9 8.6E-06 2.9E-10 78.1 5.7 93 705-835 5-111 (112)
19 2e6s_A E3 ubiquitin-protein li 97.9 8.9E-06 3E-10 73.4 4.2 46 707-753 28-76 (77)
20 2kwj_A Zinc finger protein DPF 97.8 1.5E-05 5.1E-10 76.7 4.4 92 706-835 2-107 (114)
21 1wen_A Inhibitor of growth fam 97.8 2.2E-05 7.5E-10 69.8 5.0 49 703-754 14-65 (71)
22 3asl_A E3 ubiquitin-protein li 97.7 1.3E-05 4.5E-10 71.0 3.3 46 707-753 20-68 (70)
23 3shb_A E3 ubiquitin-protein li 97.7 2E-05 6.7E-10 71.2 3.1 46 707-753 28-76 (77)
24 2kwj_A Zinc finger protein DPF 97.6 2E-05 6.8E-10 75.8 2.5 50 706-756 59-110 (114)
25 3o36_A Transcription intermedi 97.6 3.4E-05 1.2E-09 79.5 4.3 49 703-755 2-52 (184)
26 2jmi_A Protein YNG1, ING1 homo 97.6 3.1E-05 1.1E-09 71.9 3.3 50 703-755 24-77 (90)
27 2vnf_A ING 4, P29ING4, inhibit 97.6 2.1E-05 7.2E-10 67.7 1.8 47 704-753 9-58 (60)
28 2k16_A Transcription initiatio 97.5 2.9E-05 1E-09 69.1 2.7 53 703-756 16-70 (75)
29 3u5n_A E3 ubiquitin-protein li 97.5 4.3E-05 1.5E-09 80.3 4.0 49 703-755 5-55 (207)
30 1weu_A Inhibitor of growth fam 97.5 0.00012 4.1E-09 68.1 6.3 50 703-755 34-86 (91)
31 3c6w_A P28ING5, inhibitor of g 97.5 3E-05 1E-09 66.5 1.9 47 704-753 8-57 (59)
32 3v43_A Histone acetyltransfera 97.4 6.7E-05 2.3E-09 71.9 3.8 49 705-753 61-111 (112)
33 2g6q_A Inhibitor of growth pro 97.3 5.9E-05 2E-09 65.4 1.9 49 703-754 9-60 (62)
34 2ro1_A Transcription intermedi 97.3 8.2E-05 2.8E-09 77.5 2.6 46 705-754 2-49 (189)
35 3ask_A E3 ubiquitin-protein li 97.2 0.00014 4.8E-09 77.7 3.4 47 706-753 175-224 (226)
36 2ysm_A Myeloid/lymphoid or mix 97.1 0.00031 1.1E-08 66.8 4.1 48 706-754 55-104 (111)
37 1we9_A PHD finger family prote 97.1 0.00044 1.5E-08 59.7 4.4 53 702-754 3-58 (64)
38 2lv9_A Histone-lysine N-methyl 97.0 0.00053 1.8E-08 64.4 5.2 47 705-753 28-75 (98)
39 1x4i_A Inhibitor of growth pro 97.0 0.00029 9.8E-09 62.5 2.3 49 704-755 5-56 (70)
40 1wee_A PHD finger family prote 96.7 0.00095 3.3E-08 59.1 3.6 52 703-755 14-67 (72)
41 3o70_A PHD finger protein 13; 96.6 0.0013 4.5E-08 57.9 4.1 49 703-753 17-66 (68)
42 1wew_A DNA-binding family prot 96.6 0.0012 4.1E-08 59.4 3.7 51 703-755 14-73 (78)
43 2vpb_A Hpygo1, pygopus homolog 96.6 0.00066 2.2E-08 59.4 1.7 50 703-752 6-64 (65)
44 2rsd_A E3 SUMO-protein ligase 96.4 0.0016 5.4E-08 57.1 3.4 49 704-754 9-65 (68)
45 1wem_A Death associated transc 96.4 0.0014 4.7E-08 58.6 2.5 51 704-756 15-72 (76)
46 1wep_A PHF8; structural genomi 96.3 0.0015 5.1E-08 58.8 2.7 52 703-755 10-64 (79)
47 2ri7_A Nucleosome-remodeling f 96.0 0.0011 3.8E-08 67.5 -0.0 51 703-754 6-59 (174)
48 2xb1_A Pygopus homolog 2, B-ce 95.9 0.0029 1E-07 60.1 2.6 50 706-755 4-62 (105)
49 2kgg_A Histone demethylase jar 95.9 0.0029 1E-07 52.7 1.9 46 707-752 4-52 (52)
50 3o7a_A PHD finger protein 13 v 95.4 0.0084 2.9E-07 49.8 3.0 44 709-753 7-51 (52)
51 3kv5_D JMJC domain-containing 95.3 0.0033 1.1E-07 74.1 0.6 51 705-756 37-90 (488)
52 2lbm_A Transcriptional regulat 95.1 0.0072 2.5E-07 60.5 2.1 47 703-753 61-116 (142)
53 3kqi_A GRC5, PHD finger protei 94.7 0.009 3.1E-07 53.3 1.3 48 708-755 12-62 (75)
54 3ql9_A Transcriptional regulat 93.8 0.015 5.1E-07 57.3 1.0 47 704-754 56-111 (129)
55 3lqh_A Histone-lysine N-methyl 91.3 0.06 2E-06 55.9 1.5 49 706-754 3-63 (183)
56 3kv4_A PHD finger protein 8; e 87.2 0.079 2.7E-06 61.9 -1.4 51 706-756 5-58 (447)
57 1wil_A KIAA1045 protein; ring 87.0 0.24 8.4E-06 45.4 2.0 50 703-754 13-76 (89)
58 1xn7_A Hypothetical protein YH 86.1 0.4 1.4E-05 43.2 2.9 34 221-254 4-37 (78)
59 1wew_A DNA-binding family prot 85.3 0.44 1.5E-05 42.7 2.8 32 827-859 16-49 (78)
60 2k02_A Ferrous iron transport 84.6 0.43 1.5E-05 44.0 2.5 34 221-254 4-37 (87)
61 1we9_A PHD finger family prote 83.7 0.44 1.5E-05 40.8 2.0 31 827-859 6-39 (64)
62 1wem_A Death associated transc 83.3 0.64 2.2E-05 41.2 2.9 29 827-858 16-46 (76)
63 1weu_A Inhibitor of growth fam 82.5 0.93 3.2E-05 42.1 3.8 32 827-859 36-69 (91)
64 1wep_A PHF8; structural genomi 81.2 0.94 3.2E-05 40.5 3.2 29 828-859 13-44 (79)
65 3pur_A Lysine-specific demethy 80.7 0.77 2.6E-05 54.5 3.1 37 718-754 55-94 (528)
66 4gne_A Histone-lysine N-methyl 79.8 0.93 3.2E-05 43.3 2.8 31 827-858 15-45 (107)
67 1wen_A Inhibitor of growth fam 78.7 1.4 4.7E-05 39.0 3.4 32 827-859 16-49 (71)
68 3o70_A PHD finger protein 13; 78.6 1 3.5E-05 39.5 2.5 31 827-860 19-51 (68)
69 2k16_A Transcription initiatio 77.9 0.97 3.3E-05 39.9 2.2 32 827-860 18-51 (75)
70 4bbq_A Lysine-specific demethy 77.8 2.4 8.3E-05 40.1 5.1 83 706-808 8-97 (117)
71 2zet_C Melanophilin; complex, 77.7 0.87 3E-05 46.0 2.1 48 706-754 69-117 (153)
72 1wee_A PHD finger family prote 77.3 0.88 3E-05 40.0 1.7 31 827-860 16-49 (72)
73 3c6w_A P28ING5, inhibitor of g 76.6 1 3.5E-05 38.5 1.8 31 828-859 10-42 (59)
74 2lv9_A Histone-lysine N-methyl 76.1 1 3.5E-05 42.0 1.9 29 828-859 29-59 (98)
75 2xb1_A Pygopus homolog 2, B-ce 75.0 1.3 4.4E-05 42.0 2.3 30 828-858 4-36 (105)
76 2puy_A PHD finger protein 21A; 74.4 1.3 4.5E-05 37.5 2.0 47 828-885 6-52 (60)
77 2rsd_A E3 SUMO-protein ligase 73.5 1.9 6.5E-05 37.6 2.8 29 828-857 11-41 (68)
78 2ri7_A Nucleosome-remodeling f 72.8 1.1 3.8E-05 45.3 1.3 29 827-858 8-39 (174)
79 2lri_C Autoimmune regulator; Z 72.7 2 6.7E-05 37.5 2.7 47 827-884 12-58 (66)
80 2l5u_A Chromodomain-helicase-D 72.1 1.6 5.3E-05 37.4 1.9 31 827-860 11-41 (61)
81 2l0k_A Stage III sporulation p 72.0 2.3 7.9E-05 39.5 3.2 49 222-271 10-60 (93)
82 2vnf_A ING 4, P29ING4, inhibit 71.5 1.6 5.5E-05 37.3 1.8 31 828-859 11-43 (60)
83 2yql_A PHD finger protein 21A; 71.1 2.1 7.3E-05 35.8 2.5 30 827-859 9-38 (56)
84 1f62_A Transcription factor WS 70.6 1.8 6.2E-05 35.3 1.9 29 829-859 2-32 (51)
85 1xwh_A Autoimmune regulator; P 70.6 1.7 5.8E-05 37.6 1.8 30 827-859 8-37 (66)
86 3o7a_A PHD finger protein 13 v 70.2 1.7 5.9E-05 35.8 1.7 28 831-860 7-36 (52)
87 2kgg_A Histone demethylase jar 69.7 1.9 6.6E-05 35.6 1.9 29 829-858 4-35 (52)
88 4bbq_A Lysine-specific demethy 69.1 1.4 4.6E-05 41.9 1.0 37 718-754 72-114 (117)
89 1r69_A Repressor protein CI; g 68.7 6.2 0.00021 32.5 4.9 52 221-272 2-53 (69)
90 2vpb_A Hpygo1, pygopus homolog 68.3 2.4 8.1E-05 36.9 2.2 29 828-857 9-40 (65)
91 2jmi_A Protein YNG1, ING1 homo 68.1 2.1 7.3E-05 39.6 2.0 31 827-858 26-58 (90)
92 1mm2_A MI2-beta; PHD, zinc fin 67.8 1.8 6.1E-05 37.0 1.3 30 827-859 9-38 (61)
93 4b6d_A RAC GTPase-activating p 67.6 2.1 7.3E-05 36.8 1.8 34 705-738 19-52 (61)
94 1jko_C HIN recombinase, DNA-in 66.8 6.4 0.00022 30.5 4.4 32 224-256 13-44 (52)
95 1faq_A RAF-1; transferase, ser 66.5 3.9 0.00013 33.3 3.1 32 705-739 14-45 (52)
96 1uxc_A FRUR (1-57), fructose r 66.0 4 0.00014 35.3 3.2 48 234-281 1-52 (65)
97 1ptq_A Protein kinase C delta 65.8 3.7 0.00013 33.1 2.8 34 705-738 11-45 (50)
98 2g6q_A Inhibitor of growth pro 65.7 2.8 9.6E-05 36.1 2.2 32 56-88 11-44 (62)
99 2enn_A NPKC-theta, protein kin 65.4 3.4 0.00012 36.8 2.8 35 704-738 33-68 (77)
100 1zbd_B Rabphilin-3A; G protein 65.0 3.6 0.00012 40.7 3.1 50 705-754 55-107 (134)
101 1zug_A Phage 434 CRO protein; 64.9 7.8 0.00027 32.0 4.8 52 220-271 3-54 (71)
102 2yuu_A NPKC-delta, protein kin 64.3 5.3 0.00018 36.0 3.8 35 704-738 27-62 (83)
103 2r1j_L Repressor protein C2; p 63.8 6.7 0.00023 32.1 4.1 52 220-271 5-57 (68)
104 2ku3_A Bromodomain-containing 63.6 4.1 0.00014 36.0 2.9 32 827-860 16-51 (71)
105 3kqi_A GRC5, PHD finger protei 63.2 2.5 8.4E-05 37.5 1.4 30 828-859 10-42 (75)
106 3b7h_A Prophage LP1 protein 11 63.0 7.2 0.00025 33.0 4.3 53 220-272 7-61 (78)
107 2enz_A NPKC-theta, protein kin 62.8 5 0.00017 34.4 3.2 35 704-738 22-57 (65)
108 2yt5_A Metal-response element- 62.7 3 0.0001 35.7 1.8 31 827-859 6-40 (66)
109 2xi8_A Putative transcription 61.4 7.4 0.00025 31.6 3.9 49 224-272 5-54 (66)
110 1adr_A P22 C2 repressor; trans 61.3 7.7 0.00026 32.5 4.1 53 220-272 5-58 (76)
111 3pfq_A PKC-B, PKC-beta, protei 61.3 2.9 0.0001 50.7 2.0 33 705-737 48-81 (674)
112 3uej_A NPKC-delta, protein kin 60.9 3.9 0.00013 35.0 2.2 34 705-738 20-54 (65)
113 1y7y_A C.AHDI; helix-turn-heli 60.1 9.6 0.00033 31.8 4.5 53 220-272 13-66 (74)
114 2k9q_A Uncharacterized protein 59.0 7.8 0.00027 33.1 3.8 53 220-272 2-55 (77)
115 2ict_A Antitoxin HIGA; helix-t 59.0 9.3 0.00032 34.0 4.4 56 217-272 5-61 (94)
116 2fnf_X Putative RAS effector N 58.9 4.9 0.00017 35.5 2.5 32 704-737 34-65 (72)
117 3bs3_A Putative DNA-binding pr 58.7 8.6 0.00029 32.3 4.0 52 221-272 11-63 (76)
118 3asl_A E3 ubiquitin-protein li 58.5 3.7 0.00013 36.1 1.7 29 829-859 20-50 (70)
119 1wev_A Riken cDNA 1110020M19; 58.4 4 0.00014 37.3 2.0 53 827-885 16-72 (88)
120 2d8s_A Cellular modulator of i 58.3 5.5 0.00019 35.7 2.8 51 704-754 14-67 (80)
121 2l8n_A Transcriptional repress 57.9 7.4 0.00025 33.8 3.4 48 233-280 9-57 (67)
122 2wiu_B HTH-type transcriptiona 56.9 10 0.00034 32.9 4.2 55 218-272 10-65 (88)
123 1y8f_A UNC-13 homolog A, MUNC1 56.5 5.5 0.00019 34.3 2.4 35 704-738 23-58 (66)
124 1wil_A KIAA1045 protein; ring 56.2 4.6 0.00016 37.1 1.9 35 828-864 16-51 (89)
125 2b5a_A C.BCLI; helix-turn-heli 56.0 12 0.00042 31.4 4.6 52 221-272 11-63 (77)
126 2eli_A Protein kinase C alpha 55.8 8.5 0.00029 34.8 3.6 35 704-738 27-62 (85)
127 2e6s_A E3 ubiquitin-protein li 55.4 4.7 0.00016 36.2 1.8 29 829-859 28-58 (77)
128 2ao9_A Phage protein; structur 54.5 9.8 0.00034 38.5 4.2 48 233-284 48-126 (155)
129 1x4i_A Inhibitor of growth pro 54.4 6.9 0.00024 34.4 2.7 32 828-860 7-40 (70)
130 3lqh_A Histone-lysine N-methyl 54.1 5.3 0.00018 41.4 2.2 29 828-858 3-37 (183)
131 1iym_A EL5; ring-H2 finger, ub 54.0 8.4 0.00029 30.9 3.0 35 703-737 3-37 (55)
132 1fp0_A KAP-1 corepressor; PHD 53.4 4.8 0.00016 37.2 1.6 47 827-884 25-71 (88)
133 2a20_A Regulating synaptic mem 52.5 9.1 0.00031 33.0 3.0 52 702-753 6-59 (62)
134 2l43_A N-teminal domain from h 52.3 6.7 0.00023 35.9 2.4 46 827-884 25-74 (88)
135 2kpj_A SOS-response transcript 51.8 15 0.00051 32.7 4.5 53 220-272 9-62 (94)
136 3o36_A Transcription intermedi 51.2 5.3 0.00018 40.8 1.7 29 828-859 5-33 (184)
137 3trb_A Virulence-associated pr 51.0 18 0.00062 33.6 5.2 59 216-274 9-69 (104)
138 3t76_A VANU, transcriptional r 50.5 13 0.00045 33.7 4.0 64 206-272 13-76 (88)
139 3omt_A Uncharacterized protein 50.4 12 0.00041 31.5 3.6 49 224-272 12-61 (73)
140 1tc3_C Protein (TC3 transposas 49.7 14 0.00048 27.9 3.5 29 225-254 14-42 (51)
141 2db6_A SH3 and cysteine rich d 49.5 3 0.0001 36.9 -0.4 35 704-738 27-62 (74)
142 2e6r_A Jumonji/ARID domain-con 48.9 5.2 0.00018 36.9 1.0 48 828-885 17-66 (92)
143 1rfh_A RAS association (ralgds 47.6 5 0.00017 34.0 0.7 33 704-738 21-53 (59)
144 3s8q_A R-M controller protein; 47.5 20 0.00068 30.8 4.6 53 220-272 11-64 (82)
145 3u5n_A E3 ubiquitin-protein li 47.3 6.1 0.00021 41.2 1.4 29 828-859 8-36 (207)
146 2csz_A Synaptotagmin-like prot 47.2 7.4 0.00025 35.1 1.7 50 703-754 23-73 (76)
147 2ewt_A BLDD, putative DNA-bind 46.5 21 0.00072 29.5 4.4 53 220-272 8-63 (71)
148 3rsn_A SET1/ASH2 histone methy 46.3 22 0.00076 36.8 5.3 70 711-804 10-81 (177)
149 2htj_A P fimbrial regulatory p 46.2 10 0.00036 33.1 2.6 32 223-254 4-35 (81)
150 3qq6_A HTH-type transcriptiona 46.0 23 0.00079 30.6 4.7 54 219-272 9-64 (78)
151 1x57_A Endothelial differentia 45.9 20 0.00068 31.6 4.4 54 219-272 12-66 (91)
152 3cec_A Putative antidote prote 45.9 21 0.00072 32.3 4.7 55 218-272 16-71 (104)
153 2jt1_A PEFI protein; solution 44.9 12 0.0004 33.6 2.6 33 222-254 7-45 (77)
154 2a6c_A Helix-turn-helix motif; 43.9 24 0.00081 30.7 4.5 55 219-273 17-73 (83)
155 3rsn_A SET1/ASH2 histone methy 43.9 12 0.0004 38.8 2.8 49 830-884 7-58 (177)
156 1xmk_A Double-stranded RNA-spe 43.8 9.8 0.00034 34.4 2.0 34 222-255 14-48 (79)
157 2ef8_A C.ECOT38IS, putative tr 43.1 25 0.00086 29.9 4.5 54 220-273 10-64 (84)
158 3kz3_A Repressor protein CI; f 42.8 22 0.00077 30.5 4.1 53 220-272 12-65 (80)
159 2eby_A Putative HTH-type trans 42.3 23 0.0008 32.4 4.4 55 218-272 8-64 (113)
160 1kbe_A Kinase suppressor of RA 42.3 11 0.00039 31.0 2.0 29 706-737 15-43 (49)
161 1qbj_A Protein (double-strande 42.2 11 0.00036 34.1 2.0 40 215-254 5-48 (81)
162 2ct0_A Non-SMC element 1 homol 42.0 17 0.00059 32.3 3.3 33 826-860 14-46 (74)
163 2lbm_A Transcriptional regulat 41.9 10 0.00034 38.0 1.9 30 828-860 64-93 (142)
164 3kv4_A PHD finger protein 8; e 40.9 8.4 0.00029 45.1 1.4 29 828-858 5-36 (447)
165 1r79_A Diacylglycerol kinase, 40.8 12 0.00041 34.2 2.1 33 705-737 38-72 (84)
166 2ro1_A Transcription intermedi 40.5 9.1 0.00031 39.6 1.4 29 828-859 3-31 (189)
167 2jvl_A TRMBF1; coactivator, he 39.8 47 0.0016 30.5 6.1 55 218-272 32-89 (107)
168 1q1h_A TFE, transcription fact 39.5 15 0.0005 33.8 2.5 33 222-254 21-54 (110)
169 3vk0_A NHTF, transcriptional r 39.2 31 0.0011 31.9 4.8 53 220-272 21-74 (114)
170 3f6w_A XRE-family like protein 38.9 28 0.00097 29.8 4.2 53 220-272 14-67 (83)
171 2row_A RHO-associated protein 37.8 9.7 0.00033 34.9 1.0 34 704-737 34-70 (84)
172 3kjx_A Transcriptional regulat 37.8 17 0.00058 39.3 3.1 51 231-281 8-59 (344)
173 1u2w_A CADC repressor, cadmium 37.4 20 0.0007 33.8 3.2 54 223-276 46-116 (122)
174 3g5g_A Regulatory protein; tra 37.3 33 0.0011 31.2 4.6 53 220-272 28-81 (99)
175 1b0n_A Protein (SINR protein); 37.0 31 0.001 31.1 4.3 52 221-272 2-55 (111)
176 3kv5_D JMJC domain-containing 36.9 11 0.00036 44.7 1.4 29 828-858 37-68 (488)
177 2x48_A CAG38821; archeal virus 36.8 20 0.00068 28.7 2.7 31 223-254 22-52 (55)
178 1r71_A Transcriptional repress 36.1 21 0.00072 36.7 3.3 52 216-268 36-87 (178)
179 1lmb_3 Protein (lambda repress 35.9 33 0.0011 30.0 4.2 53 220-272 17-70 (92)
180 2vrw_B P95VAV, VAV1, proto-onc 35.9 21 0.00071 40.3 3.6 37 701-737 353-390 (406)
181 3shb_A E3 ubiquitin-protein li 35.0 13 0.00044 33.4 1.3 30 829-860 28-59 (77)
182 3bd1_A CRO protein; transcript 34.8 27 0.00091 30.0 3.3 47 225-272 4-50 (79)
183 3cuo_A Uncharacterized HTH-typ 34.5 25 0.00084 31.0 3.1 34 222-255 27-60 (99)
184 1neq_A DNA-binding protein NER 34.4 36 0.0012 29.8 4.1 47 222-271 12-58 (74)
185 3ask_A E3 ubiquitin-protein li 33.8 12 0.00043 40.0 1.2 30 828-859 175-206 (226)
186 4a0z_A Transcription factor FA 32.7 23 0.0008 36.6 3.0 42 222-264 15-56 (190)
187 3op9_A PLI0006 protein; struct 32.2 40 0.0014 30.8 4.3 55 218-272 7-62 (114)
188 1vyx_A ORF K3, K3RING; zinc-bi 31.9 4 0.00014 34.7 -2.4 50 703-754 4-56 (60)
189 3ky9_A Proto-oncogene VAV; cal 31.4 26 0.0009 41.7 3.6 37 703-739 527-564 (587)
190 1weq_A PHD finger protein 7; s 30.9 31 0.0011 31.7 3.1 35 719-754 44-79 (85)
191 3f52_A CLP gene regulator (CLG 30.8 42 0.0015 30.8 4.2 56 219-274 27-83 (117)
192 2heo_A Z-DNA binding protein 1 30.6 24 0.00081 30.2 2.2 32 223-254 14-46 (67)
193 3nw0_A Non-structural maintena 30.5 20 0.00067 38.5 2.1 46 705-753 180-225 (238)
194 1y9q_A Transcriptional regulat 30.3 45 0.0015 33.3 4.6 53 220-272 11-64 (192)
195 1vz0_A PARB, chromosome partit 29.6 33 0.0011 36.4 3.6 51 217-268 119-169 (230)
196 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.1 16 0.00055 34.3 1.0 35 720-754 1-44 (140)
197 2zkz_A Transcriptional repress 29.1 27 0.00092 31.7 2.5 32 223-254 31-62 (99)
198 1nd9_A Translation initiation 28.8 23 0.00079 27.9 1.7 23 233-255 2-24 (49)
199 2dbb_A Putative HTH-type trans 28.7 27 0.00092 33.8 2.5 32 223-254 13-44 (151)
200 3ql9_A Transcriptional regulat 28.6 22 0.00075 35.0 1.8 30 828-860 58-87 (129)
201 1weo_A Cellulose synthase, cat 28.3 9.5 0.00033 35.4 -0.7 49 705-754 16-67 (93)
202 3i4p_A Transcriptional regulat 28.3 25 0.00086 34.8 2.3 32 223-254 7-38 (162)
203 2ecm_A Ring finger and CHY zin 28.1 33 0.0011 27.2 2.6 34 704-737 4-37 (55)
204 1rzs_A Antirepressor, regulato 27.3 50 0.0017 27.5 3.6 47 225-275 3-50 (61)
205 2glo_A Brinker CG9653-PA; prot 27.2 52 0.0018 27.0 3.7 34 218-252 7-44 (59)
206 2hsg_A Glucose-resistance amyl 27.1 34 0.0012 36.6 3.3 48 233-280 2-50 (332)
207 2l1p_A DNA-binding protein SAT 26.8 36 0.0012 31.2 2.7 48 221-271 22-69 (83)
208 1qgp_A Protein (double strande 26.7 31 0.0011 30.5 2.3 33 222-254 17-52 (77)
209 2cfx_A HTH-type transcriptiona 26.6 31 0.0011 33.2 2.5 32 223-254 9-40 (144)
210 2cg4_A Regulatory protein ASNC 26.4 31 0.0011 33.4 2.5 32 223-254 12-43 (152)
211 2e1c_A Putative HTH-type trans 26.2 31 0.001 34.7 2.5 33 222-254 30-62 (171)
212 3h5t_A Transcriptional regulat 26.2 31 0.0011 37.5 2.8 49 231-279 7-57 (366)
213 2ct0_A Non-SMC element 1 homol 25.9 31 0.0011 30.6 2.2 30 57-88 16-45 (74)
214 3ivp_A Putative transposon-rel 25.5 61 0.0021 30.2 4.3 55 218-272 10-65 (126)
215 2cyy_A Putative HTH-type trans 25.5 33 0.0011 33.2 2.5 32 223-254 11-42 (151)
216 3jth_A Transcription activator 24.9 28 0.00095 31.1 1.7 31 223-254 27-57 (98)
217 3mlf_A Transcriptional regulat 24.6 55 0.0019 30.3 3.8 52 221-272 24-76 (111)
218 1oyi_A Double-stranded RNA-bin 24.4 28 0.00096 31.7 1.6 32 222-254 20-51 (82)
219 1i1g_A Transcriptional regulat 24.3 36 0.0012 32.2 2.5 32 223-254 8-39 (141)
220 3k1l_B Fancl; UBC, ring, RWD, 24.1 34 0.0011 39.1 2.5 33 704-736 307-343 (381)
221 2w25_A Probable transcriptiona 23.9 37 0.0013 32.8 2.5 33 222-254 10-42 (150)
222 3eus_A DNA-binding protein; st 23.7 83 0.0028 27.5 4.6 52 221-272 15-67 (86)
223 1dw9_A Cyanate lyase; cyanate 23.7 82 0.0028 31.9 5.0 52 230-281 23-85 (156)
224 2l49_A C protein; P2 bacteriop 23.7 46 0.0016 29.4 2.9 36 220-255 4-39 (99)
225 2p5v_A Transcriptional regulat 23.6 37 0.0013 33.3 2.5 33 222-254 13-45 (162)
226 2elh_A CG11849-PA, LD40883P; s 23.6 45 0.0015 29.6 2.9 33 218-251 24-56 (87)
227 3lfp_A CSP231I C protein; tran 23.6 58 0.002 29.0 3.6 51 222-272 3-58 (98)
228 2pn6_A ST1022, 150AA long hypo 23.1 36 0.0012 32.8 2.2 32 223-254 7-38 (150)
229 1v5n_A PDI-like hypothetical p 22.7 42 0.0014 30.7 2.5 60 21-88 18-78 (89)
230 1sfx_A Conserved hypothetical 22.1 46 0.0016 29.3 2.6 33 222-254 23-55 (109)
231 3nw0_A Non-structural maintena 22.0 37 0.0012 36.4 2.2 32 827-860 180-211 (238)
232 1v5n_A PDI-like hypothetical p 21.7 45 0.0015 30.5 2.5 61 795-860 18-79 (89)
233 1y0u_A Arsenical resistance op 21.1 45 0.0015 29.8 2.3 31 222-254 34-64 (96)
234 3fmy_A HTH-type transcriptiona 20.7 1E+02 0.0035 26.1 4.4 52 222-274 13-65 (73)
235 1v4r_A Transcriptional repress 20.7 56 0.0019 29.6 2.9 37 219-255 14-57 (102)
236 2kko_A Possible transcriptiona 20.6 42 0.0014 30.9 2.0 32 222-254 28-59 (108)
237 2bnm_A Epoxidase; oxidoreducta 20.3 86 0.0029 31.3 4.5 53 220-272 10-64 (198)
No 1
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=140.45 Aligned_cols=71 Identities=30% Similarity=0.560 Sum_probs=59.8
Q ss_pred ccchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhhcCceEEEcccc------CCcceeEeecCCCCCCCCC
Q 001243 48 GGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICAREARHRLEVWGKY------GCNNVELRAFCAKHSDIQD 118 (1116)
Q Consensus 48 ~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~~FHvtCA~~aG~~~e~~~~~------g~~~~~~~~fC~~Hr~~~~ 118 (1116)
-+||++||+|+|.||+++ .||||||+.++|.++|||+||+.+|++|++.... ....+.+.+||++|+|...
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPpg~ 86 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPPGS 86 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSSSC
T ss_pred cCCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCcCC
Confidence 368999999999999987 5999999999999999999999999999875211 1223578999999999753
No 2
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.17 E-value=1.2e-11 Score=114.01 Aligned_cols=64 Identities=34% Similarity=0.785 Sum_probs=53.6
Q ss_pred ccCCC--CcccccccCc-CCceeecCCcCcccccchhhhhhcCceEEEeeC--------CCceeeeecCCCCchh
Q 001243 822 AFPKG--IDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYLNVKST--------GGNFQHKAYCEKHSLE 885 (1116)
Q Consensus 822 ~I~k~--r~~C~iC~~k-~GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~--------~g~~~~~iyC~kHs~~ 885 (1116)
+|++. +++|++|+++ .||+|+|..++|.++|||+||+.+|++|+++.. .+.+++.+||++|+|.
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPp 84 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPP 84 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSS
T ss_pred CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCc
Confidence 56665 5899999987 599999999999999999999999999987531 1235688999999985
No 3
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.88 E-value=5.7e-10 Score=99.27 Aligned_cols=56 Identities=32% Similarity=0.708 Sum_probs=48.9
Q ss_pred CCCCCCcCcccCCCCC-CCCCEEEccccCcccccccccCccCCCCceeccccccccc
Q 001243 701 SKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLS 756 (1116)
Q Consensus 701 ~ke~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~ 756 (1116)
...++..|.||.+.++ ..|.||+||+|+.+||+.|||++.+|+|+|+|..|....+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcCc
Confidence 3456788999998763 5789999999999999999999999999999999987643
No 4
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.74 E-value=2.7e-09 Score=98.57 Aligned_cols=54 Identities=33% Similarity=0.740 Sum_probs=47.8
Q ss_pred CCCCCcCcccCCCCC-CCCCEEEccccCcccccccccCccCCCCceecccccccc
Q 001243 702 KEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELL 755 (1116)
Q Consensus 702 ke~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~ 755 (1116)
.+++..|.||.+.++ ..|.||+|++|..+||+.|||++.+|++.|+|..|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 456789999998753 568999999999999999999999999999999998863
No 5
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.53 E-value=1.8e-08 Score=92.95 Aligned_cols=58 Identities=26% Similarity=0.639 Sum_probs=48.3
Q ss_pred CCCCCCCcCcccCCCCC-CCCCEEEccccCcccccccccCcc------CCCCceecccccccccC
Q 001243 700 FSKEHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK------ESTGPWYCELCEELLSS 757 (1116)
Q Consensus 700 ~~ke~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi~~------ipeg~WlCd~C~~~~~~ 757 (1116)
+..+++.+|.||...+. ..|.||+|++|..+||+.||+.+. +|++.|+|..|......
T Consensus 11 ~~~e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 11 FAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CHHHHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred ccCCCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 44456789999998765 468999999999999999999652 68999999999986543
No 6
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.52 E-value=3.7e-08 Score=85.68 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=44.2
Q ss_pred CCCCcCcccCCCCC-CCCCEEEccccCcccccccccCcc----C-CCCceeccccccc
Q 001243 703 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK----E-STGPWYCELCEEL 754 (1116)
Q Consensus 703 e~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi~~----i-peg~WlCd~C~~~ 754 (1116)
.++..|.||...+. ..+.||+|++|..+||+.||+.+. + |++.|+|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 34678999998753 568999999999999999999753 3 7899999999875
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.40 E-value=2.9e-07 Score=87.94 Aligned_cols=77 Identities=26% Similarity=0.460 Sum_probs=62.3
Q ss_pred CCCCCcCcccCCCCCCCCCEEEcc--ccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCcccccccc
Q 001243 702 KEHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSL 779 (1116)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~IL~Cd--~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~~p~~~~~C~L 779 (1116)
.+++.+|.||.+ +++||.|| +|...+|..|+|+..+|.|.|+|..|.-..-.. + ..+.|.+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k------------~-~~~~C~~ 74 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS------------A-AVSFCEF 74 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS------------B-CCEECSS
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCC------------C-CCcCcCC
Confidence 345678999996 57899999 899999999999999999999999987542211 1 1579999
Q ss_pred CCC------CCCcceeccCCch
Q 001243 780 CGG------TTGAFRKSANGQW 795 (1116)
Q Consensus 780 Cp~------~gGALK~T~~g~W 795 (1116)
||. ..|+|+.+..+.|
T Consensus 75 Cp~sfC~~c~~g~l~~~~~~~~ 96 (107)
T 4gne_A 75 CPHSFCKDHEKGALVPSALEGR 96 (107)
T ss_dssp SSCEECTTTCTTSCEECTTTTC
T ss_pred CCcchhhhccCCcceecCCCCc
Confidence 996 4688988888777
No 8
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.28 E-value=4.5e-07 Score=79.27 Aligned_cols=53 Identities=26% Similarity=0.752 Sum_probs=44.9
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceeccccccccc
Q 001243 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (1116)
Q Consensus 700 ~~ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~~ 756 (1116)
+...++..|.||.+ .+.||.|++|..++|..|++ +..+|.+.|+|..|.....
T Consensus 3 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 3 MAQKNEDECAVCRD----GGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSCCCSBSSSSC----CSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred cCCCCCCCCccCCC----CCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 34466789999997 46899999999999999999 5578899999999987543
No 9
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=6e-07 Score=76.02 Aligned_cols=50 Identities=32% Similarity=0.816 Sum_probs=42.9
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceecccccc
Q 001243 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 753 (1116)
Q Consensus 700 ~~ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~ 753 (1116)
....++..|.||.+ .+.||.|+.|...+|..|++ +..+|.+.|+|..|..
T Consensus 4 g~~~~~~~C~vC~~----~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 4 GSSGHEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCSCSSSCC----SSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CcCCCCCCCccCCC----CCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34556788999998 36899999999999999999 5568899999999974
No 10
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.18 E-value=7.8e-07 Score=76.72 Aligned_cols=49 Identities=24% Similarity=0.716 Sum_probs=42.3
Q ss_pred CCCCCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceeccccccc
Q 001243 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (1116)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 754 (1116)
..++..|.||.+ .+.||.|++|..++|..|++ +..+|.+.|+|..|...
T Consensus 6 d~~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKD----GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCC----CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCC----CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345678999987 46899999999999999999 55788999999999864
No 11
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.17 E-value=6.8e-07 Score=74.04 Aligned_cols=46 Identities=30% Similarity=0.873 Sum_probs=40.1
Q ss_pred cCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceecccccc
Q 001243 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 753 (1116)
Q Consensus 707 ~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~ 753 (1116)
.|.||...+. .+.||.|++|...+|..|++ +..+|++.|+|..|..
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5999998643 57899999999999999994 5678899999999975
No 12
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.12 E-value=1.7e-06 Score=74.60 Aligned_cols=51 Identities=29% Similarity=0.849 Sum_probs=43.8
Q ss_pred CCCCCCCcCcccCCCCCCCCCEEEccccCcccccccccCc--cCCCCceeccccccc
Q 001243 700 FSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA--KESTGPWYCELCEEL 754 (1116)
Q Consensus 700 ~~ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~--~ipeg~WlCd~C~~~ 754 (1116)
++.+++..|.||.+ .+.||.|++|..++|..|++.+ .+|.+.|+|..|...
T Consensus 6 ~~~~~~~~C~vC~~----~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 6 YETDHQDYCEVCQQ----GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCCCSSCTTTSC----CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred ccCCCCCCCccCCC----CCcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 44566789999997 4789999999999999999974 578999999999864
No 13
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=74.83 Aligned_cols=48 Identities=31% Similarity=0.883 Sum_probs=42.0
Q ss_pred CCCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceecccccccc
Q 001243 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELL 755 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~ 755 (1116)
++..|.||.+ .+.||.|++|...+|..|++ +..+|.+.|+|..|....
T Consensus 4 ~~~~C~vC~~----~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRK----SGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCC----CSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCC----CCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4678999998 47899999999999999999 556789999999998753
No 14
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=1.3e-06 Score=81.29 Aligned_cols=53 Identities=25% Similarity=0.612 Sum_probs=44.7
Q ss_pred CCCCCCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceeccccccc
Q 001243 701 SKEHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (1116)
Q Consensus 701 ~ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 754 (1116)
...++..|.||..... .+.||.|++|...+|..|++ +..+|.+.|+|..|...
T Consensus 12 ~~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3455678999998643 57899999999999999999 55788999999999875
No 15
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.06 E-value=2.2e-06 Score=75.26 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=39.9
Q ss_pred CCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceeccccccc
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 754 (1116)
...|.||.+ ++.||.|++|...||..|+. +..+|++.|+|..|...
T Consensus 12 ~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 457999986 46799999999999999996 45688999999999865
No 16
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.03 E-value=4.1e-06 Score=77.47 Aligned_cols=52 Identities=25% Similarity=0.756 Sum_probs=45.0
Q ss_pred cCCCCCCCcCcccCCCCCCCCCEEEccccCcccccccc--cCccCCCCceeccccccc
Q 001243 699 DFSKEHPRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 699 e~~ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CY--Gi~~ipeg~WlCd~C~~~ 754 (1116)
.+..+++.+|.||.+. +.||.|+.|..++|..|+ ++..+|++.|+|..|...
T Consensus 19 ~~~d~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CSSSSSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cccCCCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3556778899999973 579999999999999999 566789999999999875
No 17
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.01 E-value=7.6e-06 Score=77.98 Aligned_cols=94 Identities=22% Similarity=0.475 Sum_probs=66.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccCccC--CCCceecccccccccCCCCCCCCCCccCCCccccccccC
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLC 780 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~i--peg~WlCd~C~~~~~~~~s~~~~vn~~~~p~~~~~C~LC 780 (1116)
.++..|.||.+... .++||.|+.|..++|..|.++... +.+.|+|..|. .|.+|
T Consensus 5 ~~~~~C~~C~~~g~-~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~-----------------------~C~~C 60 (111)
T 2ysm_A 5 SSGANCAVCDSPGD-LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK-----------------------VCQNC 60 (111)
T ss_dssp CCCSCBTTTCCCCC-TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC-----------------------CCTTT
T ss_pred CCCCCCcCCCCCCC-CcCCeECCCCCCCcChHHhCCccccccccCccCCcCC-----------------------ccccc
Confidence 45678999998532 467899999999999999997654 47899999985 35566
Q ss_pred CCCCC---cceeccCCchhhhccccccccceeecCccccccCccccCCCCcccccccC
Q 001243 781 GGTTG---AFRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRH 835 (1116)
Q Consensus 781 p~~gG---ALK~T~~g~WVHV~CALW~PEv~f~n~~lepVegie~I~k~r~~C~iC~~ 835 (1116)
...+. .|.-..-..|+|+.|.-- . +..++...+.|..|..
T Consensus 61 ~~~~~~~~ll~Cd~C~~~yH~~Cl~p--p-------------l~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 61 KQSGEDSKMLVCDTCDKGYHTFCLQP--V-------------MKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCCSCCTTEEECSSSCCEEEGGGSSS--C-------------CSSCCSSCCCCHHHHC
T ss_pred CccCCCCCeeECCCCCcHHhHHhcCC--c-------------cccCCCCCcCCcCCcC
Confidence 55443 333444568999999731 1 2234556688887764
No 18
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.93 E-value=8.6e-06 Score=78.06 Aligned_cols=93 Identities=23% Similarity=0.557 Sum_probs=64.7
Q ss_pred CCcCcccCCCCC-----CCCCEEEccccCcccccccccCc-----cCCCCceecccccccccCCCCCCCCCCccCCCccc
Q 001243 705 PRSCDICRRSET-----ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFV 774 (1116)
Q Consensus 705 d~~CsVC~~~E~-----~~N~IL~Cd~C~laVHq~CYGi~-----~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~~p~~~ 774 (1116)
..+|.+|...+. ..++||.|++|+..+|..|++.. .++.+.|+|..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~--------------------- 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT--------------------- 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC---------------------
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc---------------------
Confidence 357999997542 34689999999999999999863 35688999999962
Q ss_pred cccccCCCCC---Ccc-eeccCCchhhhccccccccceeecCccccccCccccCCCCcccccccC
Q 001243 775 AECSLCGGTT---GAF-RKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRH 835 (1116)
Q Consensus 775 ~~C~LCp~~g---GAL-K~T~~g~WVHV~CALW~PEv~f~n~~lepVegie~I~k~r~~C~iC~~ 835 (1116)
|.+|...+ +.| .-..-..++|+.|.. | .+..++.+.+.|..|..
T Consensus 64 --C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~--p-------------~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 64 --CSSCRDQGKNADNMLFCDSCDRGFHMECCD--P-------------PLTRMPKGMWICQICRP 111 (112)
T ss_dssp --BTTTCCCCCTTCCCEECTTTCCEECGGGCS--S-------------CCSSCCSSCCCCTTTSC
T ss_pred --cccccCcCCCccceEEcCCCCCeeecccCC--C-------------CCCCCCCCCeECCCCCC
Confidence 55565432 222 233345789999963 1 12345666788888865
No 19
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=8.9e-06 Score=73.45 Aligned_cols=46 Identities=35% Similarity=0.828 Sum_probs=40.2
Q ss_pred cCcccCCCCCCCCCEEEccccCccccccccc--CccCCCC-ceecccccc
Q 001243 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (1116)
Q Consensus 707 ~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg-~WlCd~C~~ 753 (1116)
.|.||...+. .+.||.|++|..++|..|++ +..+|.+ .|+|..|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 7999997643 68999999999999999999 5578888 999999974
No 20
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.77 E-value=1.5e-05 Score=76.69 Aligned_cols=92 Identities=23% Similarity=0.551 Sum_probs=63.7
Q ss_pred CcCcccCCCCC------CCCCEEEccccCcccccccccCc-----cCCCCceecccccccccCCCCCCCCCCccCCCccc
Q 001243 706 RSCDICRRSET------ILNPILICSGCKVAVHLDCYRNA-----KESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFV 774 (1116)
Q Consensus 706 ~~CsVC~~~E~------~~N~IL~Cd~C~laVHq~CYGi~-----~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~~p~~~ 774 (1116)
..|.+|...+. ....||.|++|..++|..|.+.. .++.+.|+|..|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~---------------------- 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK---------------------- 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC----------------------
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC----------------------
Confidence 46999997541 24689999999999999999976 3567899999985
Q ss_pred cccccCCCC--CCc-ceeccCCchhhhccccccccceeecCccccccCccccCCCCcccccccC
Q 001243 775 AECSLCGGT--TGA-FRKSANGQWVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRH 835 (1116)
Q Consensus 775 ~~C~LCp~~--gGA-LK~T~~g~WVHV~CALW~PEv~f~n~~lepVegie~I~k~r~~C~iC~~ 835 (1116)
.|.+|... ++. |.-..-..|+|+.|.- |. +..++.+.+.|..|..
T Consensus 60 -~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~--pp-------------l~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 -SCILCGTSENDDQLLFCDDCDRGYHMYCLN--PP-------------VAEPPEGSWSCHLCWE 107 (114)
T ss_dssp -CCTTTTCCTTTTTEEECSSSCCEEETTTSS--SC-------------CSSCCSSCCCCHHHHH
T ss_pred -ccCcccccCCCCceEEcCCCCccccccccC--CC-------------ccCCCCCCeECccccc
Confidence 35556542 222 3333445799999974 11 2235556688887754
No 21
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.76 E-value=2.2e-05 Score=69.80 Aligned_cols=49 Identities=22% Similarity=0.763 Sum_probs=41.7
Q ss_pred CCCCcCcccCCCCCCCCCEEEccc--cC-cccccccccCccCCCCceeccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
++..+| ||...+. +.||.|++ |. -.+|..|+|+...|.+.|+|..|...
T Consensus 14 ~~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 445778 8998653 67999999 77 48999999999999999999999875
No 22
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.74 E-value=1.3e-05 Score=71.01 Aligned_cols=46 Identities=26% Similarity=0.834 Sum_probs=39.3
Q ss_pred cCcccCCCCCCCCCEEEccccCccccccccc--CccCCCC-ceecccccc
Q 001243 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (1116)
Q Consensus 707 ~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg-~WlCd~C~~ 753 (1116)
.|.||...+. ++.||.|++|...+|..|++ +..+|.| .|+|..|..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5778887543 67999999999999999999 5678888 999999975
No 23
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.66 E-value=2e-05 Score=71.22 Aligned_cols=46 Identities=26% Similarity=0.832 Sum_probs=37.9
Q ss_pred cCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCc-eecccccc
Q 001243 707 SCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGP-WYCELCEE 753 (1116)
Q Consensus 707 ~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~-WlCd~C~~ 753 (1116)
.|.||...+. .+.||.|++|..++|..|++ +..+|.+. |+|..|.+
T Consensus 28 ~C~vC~~~~d-~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCC-CcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5777776542 57899999999999999999 55678888 99999975
No 24
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.60 E-value=2e-05 Score=75.79 Aligned_cols=50 Identities=38% Similarity=0.882 Sum_probs=42.2
Q ss_pred CcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceeccccccccc
Q 001243 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELLS 756 (1116)
Q Consensus 706 ~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~~ 756 (1116)
..|.||...+. .+.||.|++|..++|..|++ +..+|++.|+|..|.....
T Consensus 59 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 59 KSCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 36889987543 68999999999999999999 5578899999999987543
No 25
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=97.59 E-value=3.4e-05 Score=79.54 Aligned_cols=49 Identities=27% Similarity=0.742 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceecccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELL 755 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~ 755 (1116)
+++.+|.||.+ ++.+|.|++|..++|..|.+ ...+|.|.|+|..|....
T Consensus 2 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQN----GGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCC----CSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCC----CCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35678999997 46799999999999999995 456789999999999763
No 26
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.57 E-value=3.1e-05 Score=71.90 Aligned_cols=50 Identities=26% Similarity=0.724 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccC---cccccccccCccCCCCceeccc-ccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCEL-CEELL 755 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~---laVHq~CYGi~~ipeg~WlCd~-C~~~~ 755 (1116)
++..+| ||...+. +.||.||+|+ --||..|.|+...|.+.|+|.. |....
T Consensus 24 ~~~~yC-iC~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp CCSCCS-TTTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHH
T ss_pred CCCcEE-EeCCCCC--CCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchh
Confidence 455778 9998643 5799999977 7899999999999999999999 98653
No 27
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.56 E-value=2.1e-05 Score=67.67 Aligned_cols=47 Identities=23% Similarity=0.822 Sum_probs=39.7
Q ss_pred CCCcCcccCCCCCCCCCEEEccc--cC-cccccccccCccCCCCceecccccc
Q 001243 704 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 753 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~ 753 (1116)
+..+| ||.+.+ .+.||.|++ |. -.+|..|+|+...|.+.|+|..|..
T Consensus 9 e~~~C-~C~~~~--~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS--YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC--CCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 45667 999864 367999999 65 6899999999999999999999974
No 28
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.55 E-value=2.9e-05 Score=69.10 Aligned_cols=53 Identities=19% Similarity=0.564 Sum_probs=43.5
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccCccCC--CCceeccccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEELLS 756 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip--eg~WlCd~C~~~~~ 756 (1116)
++..+|.||...+. +..||.|++|...+|..|.|++..+ .+.|+|..|.....
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44568999998653 5679999999999999999987643 58999999987643
No 29
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.52 E-value=4.3e-05 Score=80.34 Aligned_cols=49 Identities=24% Similarity=0.695 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceecccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEELL 755 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~~ 755 (1116)
+++..|.||.+ ++.||.|++|..++|..|.+ +..+|.|.|+|..|....
T Consensus 5 ~~~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQN----GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCC----CEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----CCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45678999997 35699999999999999995 456789999999999753
No 30
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.51 E-value=0.00012 Score=68.10 Aligned_cols=50 Identities=22% Similarity=0.734 Sum_probs=41.9
Q ss_pred CCCCcCcccCCCCCCCCCEEEccc--cC-cccccccccCccCCCCceecccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEELL 755 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~~~ 755 (1116)
++..+| ||.+.+. +.||.||+ |. --||..|.|+...|.+.|+|..|....
T Consensus 34 ~e~~yC-iC~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC--CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 455778 9998653 67999999 66 579999999999999999999998753
No 31
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.49 E-value=3e-05 Score=66.52 Aligned_cols=47 Identities=23% Similarity=0.810 Sum_probs=40.1
Q ss_pred CCCcCcccCCCCCCCCCEEEccc--cC-cccccccccCccCCCCceecccccc
Q 001243 704 HPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEE 753 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~ 753 (1116)
+..+| ||.+.+ .+.||.||+ |. -.+|..|.|+...|.+.|+|..|..
T Consensus 8 e~~yC-~C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC--CSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC--CCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 45677 999865 367999999 77 4999999999999999999999975
No 32
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.44 E-value=6.7e-05 Score=71.87 Aligned_cols=49 Identities=24% Similarity=0.820 Sum_probs=40.7
Q ss_pred CCcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceecccccc
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEE 753 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~ 753 (1116)
-..|.||.+...+.+.||.|+.|..++|..|+. +..+|++.|+|..|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 347999987544457899999999999999995 5578899999999963
No 33
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.34 E-value=5.9e-05 Score=65.36 Aligned_cols=49 Identities=24% Similarity=0.750 Sum_probs=40.3
Q ss_pred CCCCcCcccCCCCCCCCCEEEccc--cC-cccccccccCccCCCCceeccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSG--CK-VAVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~--C~-laVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
++..+| +|.+.+. +.||.||+ |. --+|..|.|+...|.+.|+|..|...
T Consensus 9 ~e~~yC-~C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 9 NEPTYC-LCNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp -CCEET-TTTEECC--SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred CCCcEE-ECCCCCC--CCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 345677 9998643 57999999 55 79999999999999999999999753
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=97.29 E-value=8.2e-05 Score=77.45 Aligned_cols=46 Identities=28% Similarity=0.843 Sum_probs=40.1
Q ss_pred CCcCcccCCCCCCCCCEEEccccCcccccccc--cCccCCCCceeccccccc
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCY--RNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CY--Gi~~ipeg~WlCd~C~~~ 754 (1116)
+..|.||.+ ++.+|.|++|..++|..|. ++..+|.|.|+|..|...
T Consensus 2 ~~~C~~C~~----~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQK----PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCC----CSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCC----CCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 357999997 4679999999999999999 466788999999999875
No 35
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.21 E-value=0.00014 Score=77.68 Aligned_cols=47 Identities=26% Similarity=0.800 Sum_probs=36.4
Q ss_pred CcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCC-ceecccccc
Q 001243 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTG-PWYCELCEE 753 (1116)
Q Consensus 706 ~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg-~WlCd~C~~ 753 (1116)
..|.+|...+. .+.||.|++|..++|..|.+ ...+|.| .|+|..|..
T Consensus 175 c~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 37999998543 68899999999999999999 4567888 999999975
No 36
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.09 E-value=0.00031 Score=66.83 Aligned_cols=48 Identities=25% Similarity=0.659 Sum_probs=40.2
Q ss_pred CcCcccCCCCCCCCCEEEccccCccccccccc--CccCCCCceeccccccc
Q 001243 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR--NAKESTGPWYCELCEEL 754 (1116)
Q Consensus 706 ~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG--i~~ipeg~WlCd~C~~~ 754 (1116)
.+|.||..... .+.||.|+.|...+|..|+. ...+|++.|+|..|..-
T Consensus 55 ~~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 55 KVCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred CcccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46888887543 46899999999999999998 44678899999999864
No 37
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.06 E-value=0.00044 Score=59.66 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=43.6
Q ss_pred CCCCCcCcccCCCCCCCCCEEEccccCcccccccccCccCC---CCceeccccccc
Q 001243 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (1116)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~ 754 (1116)
.++..+|.+|......+..+|.|+.|..=+|..|.|+...+ ...|+|..|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35678899999865445789999999999999999987643 368999999864
No 38
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.05 E-value=0.00053 Score=64.39 Aligned_cols=47 Identities=26% Similarity=0.679 Sum_probs=37.2
Q ss_pred CCcCcccCCCCCCCCCEEEccccCcccccccccCccCC-CCceecccccc
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEE 753 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip-eg~WlCd~C~~ 753 (1116)
...| ||...+. .+.||.|+.|...+|..|+|++... .+.|+|..|..
T Consensus 28 ~vrC-iC~~~~~-~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHD-DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSC-SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccC-CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3556 9987543 5789999999999999999986422 34799999974
No 39
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.00029 Score=62.50 Aligned_cols=49 Identities=22% Similarity=0.649 Sum_probs=40.7
Q ss_pred CCCcCcccCCCCCCCCCEEEccccC---cccccccccCccCCCCceecccccccc
Q 001243 704 HPRSCDICRRSETILNPILICSGCK---VAVHLDCYRNAKESTGPWYCELCEELL 755 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~C~---laVHq~CYGi~~ipeg~WlCd~C~~~~ 755 (1116)
+..+| +|...+ .+.||.||+|+ .-+|..|.|+...|.+.|+|..|....
T Consensus 5 ~~~yC-~C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC--CCCEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34567 698864 35899999985 789999999999899999999998753
No 40
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.69 E-value=0.00095 Score=59.08 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=41.3
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccCccC--CCCceecccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE--STGPWYCELCEELL 755 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~i--peg~WlCd~C~~~~ 755 (1116)
+...+| ||...+..+..||.|+.|..=+|..|.|+... ....|+|..|....
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 345779 89986543457999999999999999998753 34789999998753
No 41
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.65 E-value=0.0013 Score=57.92 Aligned_cols=49 Identities=22% Similarity=0.654 Sum_probs=39.9
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccCccC-CCCceecccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE-STGPWYCELCEE 753 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~i-peg~WlCd~C~~ 753 (1116)
.+..+| ||...+. +..||.|+.|..=+|..|.|+... ..+.|+|..|..
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345778 9998654 567999999999999999998863 246899999975
No 42
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.62 E-value=0.0012 Score=59.44 Aligned_cols=51 Identities=25% Similarity=0.648 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEcc--ccCcccccccccCccCC-------CCceecccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICS--GCKVAVHLDCYRNAKES-------TGPWYCELCEELL 755 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd--~C~laVHq~CYGi~~ip-------eg~WlCd~C~~~~ 755 (1116)
+...+| ||...+. ...||.|+ .|..=+|..|+|+...+ ...|+|..|....
T Consensus 14 ~~~~~C-iC~~~~~-~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLE-TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCC-CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCC-CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345778 8998743 56899999 99999999999998654 3589999998753
No 43
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.57 E-value=0.00066 Score=59.38 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.7
Q ss_pred CCCCcCcccCCCCCCCCCEEEcc-ccCcccccccccCcc--------CCCCceeccccc
Q 001243 703 EHPRSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCE 752 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd-~C~laVHq~CYGi~~--------ipeg~WlCd~C~ 752 (1116)
+....|.+|.........+|.|+ +|..=+|..|.|+.. .|.+.|+|+.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 33467999999755567899999 999999999999875 367799999996
No 44
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.45 E-value=0.0016 Score=57.15 Aligned_cols=49 Identities=29% Similarity=0.691 Sum_probs=37.8
Q ss_pred CCCcCcccCCCCCCCCCEEEccc--cCcccccccccCccCCC------Cceeccccccc
Q 001243 704 HPRSCDICRRSETILNPILICSG--CKVAVHLDCYRNAKEST------GPWYCELCEEL 754 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~--C~laVHq~CYGi~~ipe------g~WlCd~C~~~ 754 (1116)
....| ||+..+. .+.||.|++ |..=+|..|+|+...+. ..|+|..|+..
T Consensus 9 ~~v~C-~C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 9 AKVRC-ICSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CEECC-TTCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCEEe-ECCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 34566 8987543 468999995 99999999999875432 36999999854
No 45
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.36 E-value=0.0014 Score=58.57 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=41.0
Q ss_pred CCCcCcccCCCCCCCCCEEEccccCcccccccccCccCC-------CCceeccccccccc
Q 001243 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES-------TGPWYCELCEELLS 756 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip-------eg~WlCd~C~~~~~ 756 (1116)
+..+| +|...+. +..||.|+.|..=+|..|.|+...+ ...|+|..|.....
T Consensus 15 ~~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 45677 9998654 4589999999999999999987542 47899999987633
No 46
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.34 E-value=0.0015 Score=58.82 Aligned_cols=52 Identities=23% Similarity=0.529 Sum_probs=41.7
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccCccCC---CCceecccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELL 755 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~~ 755 (1116)
....+| +|.........||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345667 999865446789999999999999999987543 3689999998753
No 47
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.00 E-value=0.0011 Score=67.45 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=41.6
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccCccC---CCCceeccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKE---STGPWYCELCEEL 754 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~i---peg~WlCd~C~~~ 754 (1116)
++..+| +|......+..+|.|+.|..-+|..|.|+... ..+.|+|..|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456789 99986544678999999999999999998743 3578999999875
No 48
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=95.95 E-value=0.0029 Score=60.11 Aligned_cols=50 Identities=24% Similarity=0.650 Sum_probs=42.0
Q ss_pred CcCcccCCCCCCCCCEEEcc-ccCcccccccccCcc--------CCCCceecccccccc
Q 001243 706 RSCDICRRSETILNPILICS-GCKVAVHLDCYRNAK--------ESTGPWYCELCEELL 755 (1116)
Q Consensus 706 ~~CsVC~~~E~~~N~IL~Cd-~C~laVHq~CYGi~~--------ipeg~WlCd~C~~~~ 755 (1116)
..|.+|.......+.+|.|+ .|.-=||..|-|+.. .+++.|+|..|....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 57999999754456799998 999999999999885 366899999999753
No 49
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.86 E-value=0.0029 Score=52.66 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=37.8
Q ss_pred cCcccCCCCCCCCCEEEcc-ccCcccccccccCccCC--CCceeccccc
Q 001243 707 SCDICRRSETILNPILICS-GCKVAVHLDCYRNAKES--TGPWYCELCE 752 (1116)
Q Consensus 707 ~CsVC~~~E~~~N~IL~Cd-~C~laVHq~CYGi~~ip--eg~WlCd~C~ 752 (1116)
.|.+|......+..+|.|+ .|..=+|..|.|+...+ ...|+|..|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889988765566799999 89999999999987543 4789999984
No 50
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.39 E-value=0.0084 Score=49.85 Aligned_cols=44 Identities=23% Similarity=0.650 Sum_probs=36.4
Q ss_pred cccCCCCCCCCCEEEccccCcccccccccCccCC-CCceecccccc
Q 001243 709 DICRRSETILNPILICSGCKVAVHLDCYRNAKES-TGPWYCELCEE 753 (1116)
Q Consensus 709 sVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip-eg~WlCd~C~~ 753 (1116)
.||...+. +..||.|++|+.=+|..|.|+...+ .+.|+|..|..
T Consensus 7 C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 7 CFCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp STTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 48987544 5699999999999999999988643 46899999964
No 51
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.35 E-value=0.0033 Score=74.12 Aligned_cols=51 Identities=24% Similarity=0.522 Sum_probs=40.8
Q ss_pred CCcCcccCCCCCCCCCEEEccccCcccccccccCccCCC---Cceeccccccccc
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKEST---GPWYCELCEELLS 756 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ipe---g~WlCd~C~~~~~ 756 (1116)
..+| +|......+..||.|+.|..=+|..|.|+...+. +.|+|..|.....
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 3456 9998654467899999999999999999986542 5799999987533
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.10 E-value=0.0072 Score=60.47 Aligned_cols=47 Identities=21% Similarity=0.635 Sum_probs=39.9
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccCcc---------CCCCceecccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAK---------ESTGPWYCELCEE 753 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~---------ipeg~WlCd~C~~ 753 (1116)
.++.+|.||.+ ++.++.|+.|..++|..|...+. .|+++|.|..|..
T Consensus 61 g~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 35679999998 68899999999999999997332 3789999999975
No 53
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=94.65 E-value=0.009 Score=53.28 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=39.0
Q ss_pred CcccCCCCCCCCCEEEccccCcccccccccCccCC---CCceecccccccc
Q 001243 708 CDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELL 755 (1116)
Q Consensus 708 CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~~ 755 (1116)
-+||......+..||.|+.|..=+|..|.|+...+ ...|+|..|....
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 44998764445789999999999999999998654 2679999998753
No 54
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=93.82 E-value=0.015 Score=57.34 Aligned_cols=47 Identities=21% Similarity=0.598 Sum_probs=39.2
Q ss_pred CCCcCcccCCCCCCCCCEEEccccCcccccccccCc-------cC--CCCceeccccccc
Q 001243 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRNA-------KE--STGPWYCELCEEL 754 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~-------~i--peg~WlCd~C~~~ 754 (1116)
++..|.||.+ +++++.|+.|..++|..|.... .+ +.++|.|-.|...
T Consensus 56 ~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4568999998 6889999999999999999632 33 7899999999653
No 55
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.31 E-value=0.06 Score=55.94 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=37.4
Q ss_pred CcCcccCCCCCCC---CCEEEccccCcccccccccCccC--------C-CCceeccccccc
Q 001243 706 RSCDICRRSETIL---NPILICSGCKVAVHLDCYRNAKE--------S-TGPWYCELCEEL 754 (1116)
Q Consensus 706 ~~CsVC~~~E~~~---N~IL~Cd~C~laVHq~CYGi~~i--------p-eg~WlCd~C~~~ 754 (1116)
.+|.||......+ ..||.|+.|..=||..|-|+... | ...|+|..|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 5799999864322 35999999999999999998641 2 236899988764
No 56
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=87.19 E-value=0.079 Score=61.91 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=40.9
Q ss_pred CcCcccCCCCCCCCCEEEccccCcccccccccCccCC---CCceeccccccccc
Q 001243 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEELLS 756 (1116)
Q Consensus 706 ~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~~~ 756 (1116)
...++|......+..||.|+.|..=+|..|.|+...+ .+.|+|..|.....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3466999865446789999999999999999998643 26799999987643
No 57
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=87.00 E-value=0.24 Score=45.39 Aligned_cols=50 Identities=22% Similarity=0.681 Sum_probs=39.2
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCcccccccccC---c-----------cCCCCceeccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYRN---A-----------KESTGPWYCELCEEL 754 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi---~-----------~ipeg~WlCd~C~~~ 754 (1116)
.+|..|.||...+ .+.++-|+-|+..+|..|..- . -.++..|.|..|.+.
T Consensus 13 ~~D~~C~VC~~~t--~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVWT--AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCCC--SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCcccccc--ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 3678899999754 477889999999999999831 1 124678999999875
No 58
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=86.06 E-value=0.4 Score=43.21 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=31.3
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
+..||..|-++|.|+|.|+|.++|+|+++|+.-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 5678888889999999999999999999999886
No 59
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=85.26 E-value=0.44 Score=42.66 Aligned_cols=32 Identities=22% Similarity=0.491 Sum_probs=27.7
Q ss_pred CcccccccCc--CCceeecCCcCcccccchhhhhh
Q 001243 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
...| +|++. .|.+|+|....|..+||..|.-.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi 49 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVIL 49 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEcc
Confidence 4677 89985 79999999889999999999843
No 60
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.65 E-value=0.43 Score=43.97 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=31.2
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
+..||.-|-++|.|+|.|+|.++|+|+++|++-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 5678888889999999999999999999999886
No 61
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.65 E-value=0.44 Score=40.78 Aligned_cols=31 Identities=26% Similarity=0.657 Sum_probs=26.5
Q ss_pred CcccccccCc---CCceeecCCcCcccccchhhhhh
Q 001243 827 IDVCCICRHK---HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
...|.+|++. .+.+|+|. .|..+||..|.-.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl 39 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCD--LCEMWFHGKCVKI 39 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTC
T ss_pred CCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCc
Confidence 3678899986 57899999 9999999999844
No 62
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.29 E-value=0.64 Score=41.22 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=24.4
Q ss_pred CcccccccCc--CCceeecCCcCcccccchhhhh
Q 001243 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 827 r~~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
...| +|++. .+.+|+|. .|..+||..|.-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEc
Confidence 4567 89986 46899999 899999999984
No 63
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.54 E-value=0.93 Score=42.14 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=26.1
Q ss_pred CcccccccCc-CCceeecCCcCcc-cccchhhhhh
Q 001243 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k-~GAcIqCs~~~C~-~sFHvtCA~~ 859 (1116)
...| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 36 ~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl 69 (91)
T 1weu_A 36 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 69 (91)
T ss_dssp CBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTC
T ss_pred CcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCc
Confidence 4667 99984 6889999966698 7999999863
No 64
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.21 E-value=0.94 Score=40.54 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=24.5
Q ss_pred cccccccCc---CCceeecCCcCcccccchhhhhh
Q 001243 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
..| +|++. .+.+|+|. .|..+||..|.-.
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl 44 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGI 44 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTC
T ss_pred cEE-EcCCccCCCCceEEcC--CCCCcEEeeecCc
Confidence 455 99986 58899999 8999999999843
No 65
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=80.67 E-value=0.77 Score=54.53 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCCEEEccccCcccccccccCccCC---CCceeccccccc
Q 001243 718 LNPILICSGCKVAVHLDCYRNAKES---TGPWYCELCEEL 754 (1116)
Q Consensus 718 ~N~IL~Cd~C~laVHq~CYGi~~ip---eg~WlCd~C~~~ 754 (1116)
+..+|.||+|.-=+|..|.|+.... .+.|+|..|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 3479999999999999999998643 367999999975
No 66
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.79 E-value=0.93 Score=43.30 Aligned_cols=31 Identities=26% Similarity=0.711 Sum_probs=27.4
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhh
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
...|.+|+. +|-+|.|....|..+||..|.-
T Consensus 15 ~~~C~~C~~-~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGD-GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCC-CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCC-CCcEeEECCCCCCcccccccCc
Confidence 478999995 6899999988899999999985
No 67
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=78.65 E-value=1.4 Score=39.04 Aligned_cols=32 Identities=28% Similarity=0.679 Sum_probs=26.1
Q ss_pred CcccccccCc-CCceeecCCcCcc-cccchhhhhh
Q 001243 827 IDVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k-~GAcIqCs~~~C~-~sFHvtCA~~ 859 (1116)
...| +|++. .|.+|+|...+|. .+||..|.-.
T Consensus 16 ~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl 49 (71)
T 1wen_A 16 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 49 (71)
T ss_dssp CCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTC
T ss_pred CCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCc
Confidence 4667 89984 6899999966698 7999999863
No 68
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=78.60 E-value=1 Score=39.48 Aligned_cols=31 Identities=32% Similarity=0.750 Sum_probs=25.3
Q ss_pred CcccccccCc--CCceeecCCcCcccccchhhhhhc
Q 001243 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 827 r~~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
...| +|++. ++.+|+|. .|..+||..|.-..
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIR 51 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCC
T ss_pred ceEe-ECCCcCCCCCEEECC--CCCccccccccCcC
Confidence 4677 99985 45699999 79999999998543
No 69
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=77.87 E-value=0.97 Score=39.85 Aligned_cols=32 Identities=25% Similarity=0.575 Sum_probs=26.3
Q ss_pred CcccccccCc--CCceeecCCcCcccccchhhhhhc
Q 001243 827 IDVCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 827 r~~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
...|.+|++. .+.+|+|. .|..+||..|.-..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~ 51 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIM 51 (75)
T ss_dssp EECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCS
T ss_pred CcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCC
Confidence 3679999986 34699999 89999999998543
No 70
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=77.77 E-value=2.4 Score=40.14 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=47.3
Q ss_pred CcCcccCCCCCCCCCEEEccccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCccccccccCCCC--
Q 001243 706 RSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGT-- 783 (1116)
Q Consensus 706 ~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~~p~~~~~C~LCp~~-- 783 (1116)
.+|.+|... .|+.|....|..|+|. ..|+|..|....-... .+.. ...-..|..|+..
T Consensus 8 ~~C~~C~~~--------~C~~C~~c~~~~~~~~-----~~~~~~~c~~~~~~~~----~~~~---~~~c~~c~~c~~c~~ 67 (117)
T 4bbq_A 8 RKCKACVQG--------ECGVCHYCRDMKKFGG-----PGRMKQSCVLRQCLAP----RLPH---SVTCSLCGEVDQNEE 67 (117)
T ss_dssp SCSHHHHSC--------CCSCSHHHHHSGGGTS-----CCCSCCCCGGGCCSSC----BCCT---TCBCTTTCCBCCHHH
T ss_pred CcCcCcCCc--------CCCCCCCCcCCcccCC-----CCccccchhheeeccc----cccc---cccccccCccccccc
Confidence 457777763 2999999999998864 3689988876432111 0100 0012223333321
Q ss_pred ----CCcc-eeccCCchhhhccccccccce
Q 001243 784 ----TGAF-RKSANGQWVHAFCAEWVFEST 808 (1116)
Q Consensus 784 ----gGAL-K~T~~g~WVHV~CALW~PEv~ 808 (1116)
...| .-..-..|+|..|.-...+..
T Consensus 68 ~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~ 97 (117)
T 4bbq_A 68 TQDFEKKLMECCICNEIVHPGCLQMDGEGL 97 (117)
T ss_dssp HCCGGGSCEEETTTCCEECGGGCCSCCCCE
T ss_pred ccccCcceEEeeecCCeEECCCCCCCcccc
Confidence 1123 334556899999997665544
No 71
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=77.71 E-value=0.87 Score=46.02 Aligned_cols=48 Identities=25% Similarity=0.591 Sum_probs=39.1
Q ss_pred CcCcccCCCC-CCCCCEEEccccCcccccccccCccCCCCceeccccccc
Q 001243 706 RSCDICRRSE-TILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 706 ~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
..|.+|...- ...|.-..|..|...|=+.|- +....+..|+|..|...
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 5699999863 357888999999999999994 44445788999999875
No 72
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.27 E-value=0.88 Score=40.01 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=25.3
Q ss_pred CcccccccCc--CC-ceeecCCcCcccccchhhhhhc
Q 001243 827 IDVCCICRHK--HG-ICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 827 r~~C~iC~~k--~G-AcIqCs~~~C~~sFHvtCA~~a 860 (1116)
...| +|++. .| .+|+|. .|..+||..|.-..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~ 49 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGIN 49 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCC
T ss_pred ceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccC
Confidence 4678 79986 35 699999 89999999998543
No 73
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=76.61 E-value=1 Score=38.46 Aligned_cols=31 Identities=29% Similarity=0.732 Sum_probs=25.3
Q ss_pred cccccccCc-CCceeecCCcCcc-cccchhhhhh
Q 001243 828 DVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k-~GAcIqCs~~~C~-~sFHvtCA~~ 859 (1116)
..| +|++. .|-+|+|...+|. .+||..|.-.
T Consensus 10 ~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl 42 (59)
T 3c6w_A 10 TYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDL 42 (59)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred cEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCc
Confidence 556 99984 6889999966698 7999999863
No 74
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=76.09 E-value=1 Score=42.03 Aligned_cols=29 Identities=31% Similarity=0.714 Sum_probs=24.4
Q ss_pred cccccccCc--CCceeecCCcCcccccchhhhhh
Q 001243 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
..| +|+.. .|.+|+|. .|..+||..|.-.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd--~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCD--KCSVWQHIDCMGI 59 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBT--TTCBEEETTTTTC
T ss_pred EEe-ECCCccCCCcEEEcC--CCCCcCcCcCCCC
Confidence 457 78874 68999999 8999999999843
No 75
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=75.05 E-value=1.3 Score=41.97 Aligned_cols=30 Identities=33% Similarity=0.745 Sum_probs=26.0
Q ss_pred cccccccCc---CCceeecCCcCcccccchhhhh
Q 001243 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 828 ~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
..|.+|++. .|-.|+|. ..|..+||..|.-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVg 36 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTG 36 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTT
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccCC
Confidence 579999987 57899998 5899999999973
No 76
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.44 E-value=1.3 Score=37.53 Aligned_cols=47 Identities=23% Similarity=0.648 Sum_probs=34.5
Q ss_pred cccccccCcCCceeecCCcCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCchh
Q 001243 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (1116)
Q Consensus 828 ~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 885 (1116)
..|.+|+.. |.+|.|. .|..+||..|....--. .+.+.| ||+.....
T Consensus 6 ~~C~vC~~~-g~ll~Cd--~C~~~fH~~Cl~ppl~~----~p~g~W----~C~~C~~~ 52 (60)
T 2puy_A 6 DFCSVCRKS-GQLLMCD--TCSRVYHLDCLDPPLKT----IPKGMW----ICPRCQDQ 52 (60)
T ss_dssp SSCTTTCCC-SSCEECS--SSSCEECGGGSSSCCSS----CCCSCC----CCHHHHHH
T ss_pred CCCcCCCCC-CcEEEcC--CCCcCEECCcCCCCcCC----CCCCce----EChhccCh
Confidence 679999985 8999999 99999999999742111 123444 88877543
No 77
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=73.54 E-value=1.9 Score=37.55 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=24.7
Q ss_pred cccccccCc--CCceeecCCcCcccccchhhh
Q 001243 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCA 857 (1116)
Q Consensus 828 ~~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA 857 (1116)
..| +|+.. .|.+|+|....|..+||..|.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 556 79874 789999996679999999997
No 78
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=72.80 E-value=1.1 Score=45.32 Aligned_cols=29 Identities=31% Similarity=0.791 Sum_probs=24.8
Q ss_pred CcccccccCc---CCceeecCCcCcccccchhhhh
Q 001243 827 IDVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 827 r~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
...| +|++. .|..|+|. .|..+||..|.-
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVG 39 (174)
T ss_dssp CEET-TTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred CcEe-eCCCCCCCCCCEeECC--CCCchhChhhcC
Confidence 3678 99986 57799999 999999999983
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=72.65 E-value=2 Score=37.54 Aligned_cols=47 Identities=26% Similarity=0.545 Sum_probs=33.6
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCch
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (1116)
...|.+|+. .|.+|.|. .|...||..|....--. ...+.| ||+.-+.
T Consensus 12 ~~~C~vC~~-~~~ll~Cd--~C~~~~H~~Cl~P~l~~----~P~g~W----~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGD-GTDVLRCT--HCAAAFHWRCHFPAGTS----RPGTGL----RCRSCSG 58 (66)
T ss_dssp TCCCTTTSC-CTTCEECS--SSCCEECHHHHCTTTCC----CCSSSC----CCTTTTT
T ss_pred CCCcCCCCC-CCeEEECC--CCCCceecccCCCccCc----CCCCCE----ECccccC
Confidence 367999997 58899999 89999999998543211 223445 7776643
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=72.13 E-value=1.6 Score=37.39 Aligned_cols=31 Identities=29% Similarity=0.812 Sum_probs=27.1
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhhhc
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
...|.+|++ .|.+|.|. .|..+||..|....
T Consensus 11 ~~~C~vC~~-~g~ll~CD--~C~~~fH~~Cl~p~ 41 (61)
T 2l5u_A 11 QDYCEVCQQ-GGEIILCD--TCPRAYHMVCLDPD 41 (61)
T ss_dssp CSSCTTTSC-CSSEEECS--SSSCEEEHHHHCTT
T ss_pred CCCCccCCC-CCcEEECC--CCChhhhhhccCCC
Confidence 378999998 48999999 99999999998763
No 81
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=72.03 E-value=2.3 Score=39.52 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=41.6
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc--ccccchhhHHHHHHh
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWL 271 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~--~~~~~~~~~k~~~wl 271 (1116)
..|+..|.+.| ++++|||...|+|..+|--.|+. ...+++...+|.+.|
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~al 60 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL 60 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 35666666666 99999999999999999999985 579999999998873
No 82
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=71.49 E-value=1.6 Score=37.25 Aligned_cols=31 Identities=29% Similarity=0.729 Sum_probs=25.0
Q ss_pred cccccccCc-CCceeecCCcCcc-cccchhhhhh
Q 001243 828 DVCCICRHK-HGICIKCNYGNCQ-TTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k-~GAcIqCs~~~C~-~sFHvtCA~~ 859 (1116)
..| +|++. .|.+|.|...+|. .+||..|.-.
T Consensus 11 ~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl 43 (60)
T 2vnf_A 11 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGL 43 (60)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCC
Confidence 556 89984 6889999965688 7999999863
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.09 E-value=2.1 Score=35.78 Aligned_cols=30 Identities=30% Similarity=0.924 Sum_probs=26.6
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhhh
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
...|.+|+.. |.+|.|. .|..+||..|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd--~C~~~~H~~Cl~p 38 (56)
T 2yql_A 9 EDFCSVCRKS-GQLLMCD--TCSRVYHLDCLDP 38 (56)
T ss_dssp CCSCSSSCCS-SCCEECS--SSSCEECSSSSSS
T ss_pred CCCCccCCCC-CeEEEcC--CCCcceECccCCC
Confidence 3789999985 8899999 9999999999874
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.64 E-value=1.8 Score=35.30 Aligned_cols=29 Identities=38% Similarity=0.919 Sum_probs=24.5
Q ss_pred ccccccCc--CCceeecCCcCcccccchhhhhh
Q 001243 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 829 ~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
.|.+|++. .+.+|.|. .|...||..|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCC
Confidence 58999975 35789999 9999999999864
No 85
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=70.58 E-value=1.7 Score=37.63 Aligned_cols=30 Identities=37% Similarity=0.909 Sum_probs=26.4
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhhh
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
...|.+|+.. |.+|.|. .|..+||..|...
T Consensus 8 ~~~C~vC~~~-g~ll~CD--~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRDG-GELICCD--GCPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSCC-SSCEECS--SCCCEECTTTSSS
T ss_pred CCCCccCCCC-CCEEEcC--CCChhhcccccCC
Confidence 4789999984 8899999 8999999999874
No 86
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=70.16 E-value=1.7 Score=35.83 Aligned_cols=28 Identities=36% Similarity=0.832 Sum_probs=22.9
Q ss_pred ccccCc--CCceeecCCcCcccccchhhhhhc
Q 001243 831 CICRHK--HGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 831 ~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
.+|++. ++.+|+|. .|..+||..|.-..
T Consensus 7 C~C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~ 36 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECN--ECHTWIHLSCAKIR 36 (52)
T ss_dssp STTCCBCTTCCEEECT--TTCCEEETTTTTCC
T ss_pred EEeCCcCCCCCEEEcC--CCCccccccccCCC
Confidence 478875 46999999 79999999998543
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=69.68 E-value=1.9 Score=35.60 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=23.8
Q ss_pred ccccccCc---CCceeecCCcCcccccchhhhh
Q 001243 829 VCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 829 ~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
.|.+|+++ .+..|+|.. .|..+||..|+-
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTT
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccC
Confidence 47788886 355999996 799999999974
No 88
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=69.10 E-value=1.4 Score=41.88 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=28.0
Q ss_pred CCCEEEccccCcccccccccCccC------CCCceeccccccc
Q 001243 718 LNPILICSGCKVAVHLDCYRNAKE------STGPWYCELCEEL 754 (1116)
Q Consensus 718 ~N~IL~Cd~C~laVHq~CYGi~~i------peg~WlCd~C~~~ 754 (1116)
...|+.|+.|.-.||..|.++... ..+.|.|..|...
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 456999999999999999986521 2345999999753
No 89
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=68.70 E-value=6.2 Score=32.47 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=38.9
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHhh
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl~ 272 (1116)
|+..||++..+..++.+++|..+|||+.+|..-.......+..-.+|.++|.
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~la~~l~ 53 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALG 53 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchHHHHHHHHHC
Confidence 5677899999999999999999999999988776533333333455655553
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=68.26 E-value=2.4 Score=36.91 Aligned_cols=29 Identities=34% Similarity=0.760 Sum_probs=24.9
Q ss_pred cccccccCc---CCceeecCCcCcccccchhhh
Q 001243 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCA 857 (1116)
Q Consensus 828 ~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA 857 (1116)
..|.+|++. ..-.|+|.. .|..+||..|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHH
T ss_pred CcCccCCCccCCCCCeEeccc-CccccCchhcc
Confidence 679999986 345899994 99999999997
No 91
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=68.15 E-value=2.1 Score=39.65 Aligned_cols=31 Identities=29% Similarity=0.693 Sum_probs=24.9
Q ss_pred CcccccccC-cCCceeecCCcCcc-cccchhhhh
Q 001243 827 IDVCCICRH-KHGICIKCNYGNCQ-TTFHPTCAR 858 (1116)
Q Consensus 827 r~~C~iC~~-k~GAcIqCs~~~C~-~sFHvtCA~ 858 (1116)
...| +|++ ..|.+|.|...+|. .+||..|.-
T Consensus 26 ~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 26 EVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp SCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS
T ss_pred CcEE-EeCCCCCCCEEEecCCCCccccCcCccCC
Confidence 3667 9997 46889999955566 899999984
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=67.75 E-value=1.8 Score=37.01 Aligned_cols=30 Identities=23% Similarity=0.899 Sum_probs=26.3
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhhh
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
...|.+|+. .|.+|.|. .|...||..|...
T Consensus 9 ~~~C~vC~~-~g~ll~Cd--~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 9 MEFCRVCKD-GGELLCCD--TCPSSYHIHCLNP 38 (61)
T ss_dssp CSSCTTTCC-CSSCBCCS--SSCCCBCSSSSSS
T ss_pred CCcCCCCCC-CCCEEEcC--CCCHHHcccccCC
Confidence 467999997 58899999 8999999999874
No 93
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=67.60 E-value=2.1 Score=36.78 Aligned_cols=34 Identities=29% Similarity=0.647 Sum_probs=27.1
Q ss_pred CCcCcccCCCCCCCCCEEEccccCcccccccccC
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...|++|.+.-.-+.+.+.|..|++.+|..|-..
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDR 52 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhhc
Confidence 4689999763334578899999999999999643
No 94
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=66.84 E-value=6.4 Score=30.48 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.5
Q ss_pred HHHHHhhhCCcchhhhhhhhcCChhhhhhcccc
Q 001243 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD 256 (1116)
Q Consensus 224 ~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~ 256 (1116)
.+.+|++.| .++.+||.++|||..+|-..|..
T Consensus 13 ~i~~l~~~g-~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 13 QISRLLEKG-HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHHTT-CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHHH
Confidence 344567788 89999999999999988766543
No 95
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=66.46 E-value=3.9 Score=33.28 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=26.0
Q ss_pred CCcCcccCCCCCCCCCEEEccccCcccccccccCc
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNA 739 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~ 739 (1116)
..+|++|...= -+-+.|..|++.||..|....
T Consensus 14 pt~C~~C~~~l---~qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 14 LAFCDICQKFL---LNGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp CEECTTSSSEE---CSEEECTTTTCCBCSTTSSSS
T ss_pred CcCCCCccccc---ccCCEeCCCCCeEChhHHhhC
Confidence 47899998631 278999999999999998643
No 96
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=66.00 E-value=4 Score=35.26 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=40.7
Q ss_pred cchhhhhhhhcCChhhhhhccccc----cccchhhHHHHHHhhhcccccccc
Q 001243 234 VNVKDIASDIGISPDLLKTTLADG----TFASDLQCKLVKWLSNHAYLGGLL 281 (1116)
Q Consensus 234 v~~~~~a~~~g~s~~~~~a~l~~~----~~~~~~~~k~~~wl~~~~~~~~~~ 281 (1116)
++.+|||...|+|+-+|--.|+.. .++++...+|.+.++..-|.+...
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~ 52 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 478999999999999999999843 689999999999999888866543
No 97
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=65.81 E-value=3.7 Score=33.08 Aligned_cols=34 Identities=29% Similarity=0.666 Sum_probs=27.2
Q ss_pred CCcCcccCCCC-CCCCCEEEccccCcccccccccC
Q 001243 705 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 705 d~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
..+|++|.+.= +...+-+.|..|++.+|..|...
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence 46799998743 23468899999999999999753
No 98
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=65.74 E-value=2.8 Score=36.10 Aligned_cols=32 Identities=25% Similarity=0.654 Sum_probs=25.9
Q ss_pred cccccccccc-cCceeeCCCCCCC-cccchhhhhh
Q 001243 56 KLVCNICRVK-CGACVRCSHGTCR-TSFHPICARE 88 (1116)
Q Consensus 56 ~LkC~iC~~k-~GAcIqCs~~~C~-~~FHvtCA~~ 88 (1116)
.+.| +|++. .|-.|+|....|. .+||..|.-.
T Consensus 11 ~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred CcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCc
Confidence 4677 89974 6889999966688 9999999864
No 99
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=65.36 E-value=3.4 Score=36.76 Aligned_cols=35 Identities=23% Similarity=0.624 Sum_probs=28.0
Q ss_pred CCCcCcccCCCC-CCCCCEEEccccCcccccccccC
Q 001243 704 HPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 704 ~d~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...+|++|...= ....+-+.|..|++.||..|...
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 357899998742 23568899999999999999864
No 100
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.00 E-value=3.6 Score=40.69 Aligned_cols=50 Identities=22% Similarity=0.595 Sum_probs=38.7
Q ss_pred CCcCcccCCCCC-CCCCEEEccccCcccccccccCcc--CCCCceeccccccc
Q 001243 705 PRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAK--ESTGPWYCELCEEL 754 (1116)
Q Consensus 705 d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi~~--ipeg~WlCd~C~~~ 754 (1116)
...|.+|...-+ ..|.-..|..|...|=+.|-+... ..+..|+|..|...
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 356999998653 567889999999999999965332 23567999999875
No 101
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=64.93 E-value=7.8 Score=32.02 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=39.7
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl 271 (1116)
.+...||++.....++.+++|..+|||+.+|..-.......++.-.+|.+.|
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l 54 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMAL 54 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 3677899999999999999999999999998877653333455555555554
No 102
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.35 E-value=5.3 Score=35.97 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=27.9
Q ss_pred CCCcCcccCCCCC-CCCCEEEccccCcccccccccC
Q 001243 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...+|++|...=. ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 3468999987432 2468899999999999999864
No 103
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=63.81 E-value=6.7 Score=32.06 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=39.7
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWL 271 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl 271 (1116)
.+...||++..+..++.+++|..+|||+.+|..-.. ......+.-.+|.+.|
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l 57 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKAL 57 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 467889999999999999999999999999877665 2333445555665555
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=63.62 E-value=4.1 Score=35.98 Aligned_cols=32 Identities=25% Similarity=0.653 Sum_probs=27.0
Q ss_pred CcccccccCcC----CceeecCCcCcccccchhhhhhc
Q 001243 827 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 827 r~~C~iC~~k~----GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
...|.+|+... +..|.|. .|..+||..|....
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP 51 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCC
Confidence 47899999753 6899999 99999999998654
No 105
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=63.15 E-value=2.5 Score=37.48 Aligned_cols=30 Identities=33% Similarity=0.887 Sum_probs=24.3
Q ss_pred cccccccCc---CCceeecCCcCcccccchhhhhh
Q 001243 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
...++|++. .+.+|+|. .|..+||..|.-.
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~ 42 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECD--ACKDWFHGSCVGV 42 (75)
T ss_dssp CEETTTTEECCTTSCEEECT--TTCCEEEHHHHTC
T ss_pred eeEEECCCcCCCCCCEEEcC--CCCCCEecccccc
Confidence 344589985 46899999 8999999999954
No 106
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=63.01 E-value=7.2 Score=32.97 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=42.5
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccc--cccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~--~~~~~~~~k~~~wl~ 272 (1116)
.|...||++..+...+.+++|..+|||+.+|..-.... ....+.-.+|.+.|.
T Consensus 7 ~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 7 FVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 57788999999999999999999999999998876532 455566667777664
No 107
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=62.81 E-value=5 Score=34.40 Aligned_cols=35 Identities=26% Similarity=0.587 Sum_probs=27.7
Q ss_pred CCCcCcccCCCC-CCCCCEEEccccCcccccccccC
Q 001243 704 HPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 704 ~d~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...+|++|...= ....+-+.|..|++.+|..|...
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CCcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 347899998743 23468899999999999999853
No 108
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.72 E-value=3 Score=35.74 Aligned_cols=31 Identities=26% Similarity=0.778 Sum_probs=26.7
Q ss_pred CcccccccCc----CCceeecCCcCcccccchhhhhh
Q 001243 827 IDVCCICRHK----HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 827 r~~C~iC~~k----~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
...|.+|+.. .+.+|.|. .|...||..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCC
Confidence 3689999975 38899999 9999999999765
No 109
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=61.43 E-value=7.4 Score=31.61 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=37.5
Q ss_pred HHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 224 ~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.||++..+..++.+++|..+|+|+.+|..-+. ......+.-.+|.+.|.
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 54 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLN 54 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 36788888889999999999999999987765 33445555667766664
No 110
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=61.34 E-value=7.7 Score=32.54 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=40.6
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.++..||++..+..++..++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 58 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 58 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 578889999999999999999999999999877665 33334455556666553
No 111
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=61.32 E-value=2.9 Score=50.70 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=0.0
Q ss_pred CCcCcccCCCC-CCCCCEEEccccCccccccccc
Q 001243 705 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 705 d~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYG 737 (1116)
..+|++|.+.= +...+-+.|..|++.||..|..
T Consensus 48 p~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~ 81 (674)
T 3pfq_A 48 PTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE 81 (674)
T ss_dssp ----------------------------------
T ss_pred CCccccccccccccCCceeECCCCCCCcChhhcC
Confidence 56899998742 2345778999999999999974
No 112
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=60.90 E-value=3.9 Score=35.04 Aligned_cols=34 Identities=29% Similarity=0.666 Sum_probs=27.3
Q ss_pred CCcCcccCCCC-CCCCCEEEccccCcccccccccC
Q 001243 705 PRSCDICRRSE-TILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 705 d~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
..+|++|.+.= ....+-+.|..|++.+|..|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 46899998742 23468899999999999999853
No 113
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=60.05 E-value=9.6 Score=31.76 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=40.7
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.|+..||++.....++..++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 13 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~ 66 (74)
T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALD 66 (74)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 467789999999999999999999999999877654 33444555566666554
No 114
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=59.04 E-value=7.8 Score=33.14 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=39.7
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
+++..||++..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 2 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~ 55 (77)
T 2k9q_A 2 ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKG 55 (77)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 367788999999999999999999999999877654 23344455556666553
No 115
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=59.02 E-value=9.3 Score=33.96 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=43.9
Q ss_pred CCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 217 ~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
+...+.-.|+.+++...++..++|..+|||+.+|..-+. ......+.-.+|.+.|.
T Consensus 5 ~~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~ 61 (94)
T 2ict_A 5 NHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIG 61 (94)
T ss_dssp TCCCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTC
T ss_pred CCCChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 345678889999999999999999999999999977765 33455666667766554
No 116
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=58.92 E-value=4.9 Score=35.49 Aligned_cols=32 Identities=38% Similarity=0.872 Sum_probs=26.7
Q ss_pred CCCcCcccCCCCCCCCCEEEccccCccccccccc
Q 001243 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG 737 (1116)
...+|+.|.+.= ..+-+.|..|++.+|..|..
T Consensus 34 ~pt~C~~C~~~l--~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV--LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC--SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH--HhCcCccCCCCCeechhhhc
Confidence 346899998743 56778999999999999985
No 117
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=58.75 E-value=8.6 Score=32.31 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
+..-||++.+...++.+++|..+|+|+.+|..-+. ......+.-.+|.+.|.
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 63 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLN 63 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34568888888899999999999999999987765 33445555667777664
No 118
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.52 E-value=3.7 Score=36.07 Aligned_cols=29 Identities=24% Similarity=0.741 Sum_probs=24.3
Q ss_pred ccccccC--cCCceeecCCcCcccccchhhhhh
Q 001243 829 VCCICRH--KHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 829 ~C~iC~~--k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
.|.+|++ ..|.+|.|. .|...||..|...
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~P 50 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 50 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSS
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCC
Confidence 4678886 368899999 9999999999863
No 119
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.43 E-value=4 Score=37.33 Aligned_cols=53 Identities=19% Similarity=0.533 Sum_probs=35.4
Q ss_pred CcccccccCc----CCceeecCCcCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCchh
Q 001243 827 IDVCCICRHK----HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (1116)
Q Consensus 827 r~~C~iC~~k----~GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 885 (1116)
...|.+|+.. .+.+|.|. .|...||..|-...--...+....+.| ||......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W----~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVW----YCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCC----CCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCe----eCccccch
Confidence 3689999986 37899999 899999999975432110001233455 78766553
No 120
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.26 E-value=5.5 Score=35.72 Aligned_cols=51 Identities=27% Similarity=0.569 Sum_probs=30.2
Q ss_pred CCCcCcccCCCCCCCCCEEE---ccccCcccccccccCccCCCCceeccccccc
Q 001243 704 HPRSCDICRRSETILNPILI---CSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~---Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
+...|.||++....++.++. |.+..-.||+.|.--=....+...|..|...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~ 67 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCB
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCe
Confidence 34679999974333556552 3334589999997311111123578888765
No 121
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=57.93 E-value=7.4 Score=33.78 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=41.2
Q ss_pred CcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhccccccc
Q 001243 233 KVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGL 280 (1116)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~~~~~~~ 280 (1116)
+++.+|||...|+|.-+|--.|+ ....+++...+|.+.++..-|.+..
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC--
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 58999999999999999999998 3468999999999999998886654
No 122
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=56.86 E-value=10 Score=32.92 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=42.8
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
..+|+..||++..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 10 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~ 65 (88)
T 2wiu_B 10 PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLE 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 44678899999999999999999999999999877665 34445555566666654
No 123
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=56.54 E-value=5.5 Score=34.31 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=27.4
Q ss_pred CCCcCcccCCCCC-CCCCEEEccccCcccccccccC
Q 001243 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...+|++|...=. ...+-+.|..|++.+|..|...
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence 3468999987432 2467899999999999999853
No 124
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=56.18 E-value=4.6 Score=37.14 Aligned_cols=35 Identities=26% Similarity=0.697 Sum_probs=29.8
Q ss_pred cccccccCc-CCceeecCCcCcccccchhhhhhcCceE
Q 001243 828 DVCCICRHK-HGICIKCNYGNCQTTFHPTCARSAGFYL 864 (1116)
Q Consensus 828 ~~C~iC~~k-~GAcIqCs~~~C~~sFHvtCA~~aG~~~ 864 (1116)
..|.||+.- .+..+.|. -|.+.||..|-++.|+.-
T Consensus 16 ~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~ 51 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQ 51 (89)
T ss_dssp CCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCC
T ss_pred cccCccccccccceeccc--cccccccHhhcccccccc
Confidence 689999973 57777899 899999999999988654
No 125
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=56.04 E-value=12 Score=31.38 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=39.8
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
|+..||++..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (77)
T 2b5a_A 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALD 63 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 56778999989999999999999999999887665 33444455566666554
No 126
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.76 E-value=8.5 Score=34.82 Aligned_cols=35 Identities=29% Similarity=0.656 Sum_probs=27.9
Q ss_pred CCCcCcccCCCCC-CCCCEEEccccCcccccccccC
Q 001243 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...+|++|...=. ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 3578999987432 2468899999999999999863
No 127
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.36 E-value=4.7 Score=36.20 Aligned_cols=29 Identities=21% Similarity=0.768 Sum_probs=25.1
Q ss_pred ccccccC--cCCceeecCCcCcccccchhhhhh
Q 001243 829 VCCICRH--KHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 829 ~C~iC~~--k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
.|.+|++ ..|.+|.|. .|...||..|...
T Consensus 28 ~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNP 58 (77)
T ss_dssp SCSSSCCCCCSTTEEECS--SSCCEEETTSSSS
T ss_pred CCcCcCCcCCCCCEEEcC--CCCccccccccCC
Confidence 6889987 378899999 9999999999863
No 128
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=54.54 E-value=9.8 Score=38.54 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=34.4
Q ss_pred CcchhhhhhhhcCChhhhhh------cc-------------------------ccccccchhhHHHHHHhhhcccccccc
Q 001243 233 KVNVKDIASDIGISPDLLKT------TL-------------------------ADGTFASDLQCKLVKWLSNHAYLGGLL 281 (1116)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a------~l-------------------------~~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (1116)
.+++.+||.++|||..+|-. .+ ...+-.|+++. ++-||+|+ |-..
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~~le~~~~e~~~~~~~~~k~~~p~~~A-~i~~LKn~---g~~~ 123 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQVYSKLMQLILGPQPSVKA-MQLYMQRF---GLLT 123 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSSSCCHHH-HHHHHHHT---TCCE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH-HHHHHHHc---Cccc
Confidence 68999999999999988865 21 01223788888 56999997 4444
Q ss_pred cce
Q 001243 282 KNV 284 (1116)
Q Consensus 282 ~~~ 284 (1116)
.+.
T Consensus 124 Dk~ 126 (155)
T 2ao9_A 124 DKK 126 (155)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 129
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.39 E-value=6.9 Score=34.43 Aligned_cols=32 Identities=28% Similarity=0.706 Sum_probs=24.6
Q ss_pred cccccccC-cCCceeecCCcCc-ccccchhhhhhc
Q 001243 828 DVCCICRH-KHGICIKCNYGNC-QTTFHPTCARSA 860 (1116)
Q Consensus 828 ~~C~iC~~-k~GAcIqCs~~~C-~~sFHvtCA~~a 860 (1116)
..| +|++ ..|.+|+|...+| ..+||..|.-..
T Consensus 7 ~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~ 40 (70)
T 1x4i_A 7 GYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVGLT 40 (70)
T ss_dssp CCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHTCS
T ss_pred eEE-EcCCCCCCCEeEeCCCCCCccCCcccccccC
Confidence 456 5887 4789999996556 489999998644
No 130
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=54.10 E-value=5.3 Score=41.39 Aligned_cols=29 Identities=21% Similarity=0.737 Sum_probs=24.4
Q ss_pred cccccccCc------CCceeecCCcCcccccchhhhh
Q 001243 828 DVCCICRHK------HGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 828 ~~C~iC~~k------~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
..|.+|++. .+.+|+|. .|..+||..|.-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvg 37 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCEN 37 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSS
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccc
Confidence 569999985 23499999 999999999984
No 131
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=53.99 E-value=8.4 Score=30.86 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=24.8
Q ss_pred CCCCcCcccCCCCCCCCCEEEccccCccccccccc
Q 001243 703 EHPRSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG 737 (1116)
+++..|.||.+.-..++..+....|+-.+|..|..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~ 37 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVD 37 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHH
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHH
Confidence 34568999998533344556666799999999963
No 132
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.45 E-value=4.8 Score=37.22 Aligned_cols=47 Identities=26% Similarity=0.616 Sum_probs=34.3
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCch
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (1116)
...|.+|+.. |-.|.|. .|...||..|....--. .+.+.| ||+.-..
T Consensus 25 ~~~C~vC~~~-g~LL~CD--~C~~~fH~~Cl~PpL~~----~P~g~W----~C~~C~~ 71 (88)
T 1fp0_A 25 ATICRVCQKP-GDLVMCN--QCEFCFHLDCHLPALQD----VPGEEW----SCSLCHV 71 (88)
T ss_dssp SSCCSSSCSS-SCCEECT--TSSCEECTTSSSTTCCC----CCSSSC----CCCSCCC
T ss_pred CCcCcCcCCC-CCEEECC--CCCCceecccCCCCCCC----CcCCCc----CCccccC
Confidence 4789999985 7899999 99999999998553211 233455 7776654
No 133
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=52.49 E-value=9.1 Score=33.02 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=34.5
Q ss_pred CCCCCcCcccCCCCCCCCCEEEccccCcccccccccCccCC--CCceecccccc
Q 001243 702 KEHPRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKES--TGPWYCELCEE 753 (1116)
Q Consensus 702 ke~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ip--eg~WlCd~C~~ 753 (1116)
+++...|.||......++---.|.-|++.+-..|-|-..+. ..-|.|..|..
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34567899999865444444467777777777775544444 34599999974
No 134
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=52.32 E-value=6.7 Score=35.94 Aligned_cols=46 Identities=22% Similarity=0.541 Sum_probs=33.8
Q ss_pred CcccccccCcC----CceeecCCcCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCch
Q 001243 827 IDVCCICRHKH----GICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (1116)
Q Consensus 827 r~~C~iC~~k~----GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (1116)
...|.+|+... +.+|.|. .|..+||..|..... .+.+.| ||+.-..
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~------vP~g~W----~C~~C~~ 74 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY------IPEGQW----LCRHCLQ 74 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSS------CCSSCC----CCHHHHH
T ss_pred CCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCc------cCCCce----ECccccC
Confidence 47899999742 3899999 999999999986542 234555 7876544
No 135
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=51.77 E-value=15 Score=32.74 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=40.5
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.|...||+|..+..++.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 9 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~ 62 (94)
T 2kpj_A 9 IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFN 62 (94)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHC
Confidence 467789999999999999999999999999877654 23334455566666664
No 136
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=51.18 E-value=5.3 Score=40.79 Aligned_cols=29 Identities=31% Similarity=0.903 Sum_probs=25.0
Q ss_pred cccccccCcCCceeecCCcCcccccchhhhhh
Q 001243 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
..|.+|+.. |-.+.|. .|...||..|...
T Consensus 5 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~C~~p 33 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCE--KCPKVFHLSCHVP 33 (184)
T ss_dssp SSCTTTCCC-SSCEECS--SSSCEECTTTSSS
T ss_pred CccccCCCC-CeeeecC--CCCcccCccccCC
Confidence 579999974 8889999 8999999999644
No 137
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=50.97 E-value=18 Score=33.57 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=47.3
Q ss_pred CCCcchHHHHHH-HhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhc
Q 001243 216 SDALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (1116)
Q Consensus 216 ~~~~~~~~~lkk-li~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~ 274 (1116)
.+.....-.||+ |.+...++..++|..+|||..+|-.-+. ...++++.-.+|-+.|.-.
T Consensus 9 ~~~~~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs 69 (104)
T 3trb_A 9 MRPIHPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTT 69 (104)
T ss_dssp CCCCCHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 344567888986 8999999999999999999999988876 4567777777887777543
No 138
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=50.50 E-value=13 Score=33.67 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHhh
Q 001243 206 DRSEFEDVNPSDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl~ 272 (1116)
++.+..+.+|.-. .--||+|..+...+..++|..+|||+.+|..-........+.-.||.+.|.
T Consensus 13 ~~~~~~~~~M~i~---~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 13 GRENLYFQGMRVS---YNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLN 76 (88)
T ss_dssp -CCCCSCCCEEEE---CHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CccchhhccccHH---HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 3444455555332 346788888888999999999999999988776544456666777777775
No 139
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=50.39 E-value=12 Score=31.49 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=39.3
Q ss_pred HHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 224 ILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 224 ~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
-||+|..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 12 ~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 61 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALN 61 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 47788888889999999999999999888765 44566677777777764
No 140
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.70 E-value=14 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 225 lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
+..|...| .+.++||..+|||..+|..-|
T Consensus 14 i~~~~~~g-~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 14 LDVMKLLN-VSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHHHHHTT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 33456677 799999999999998876543
No 141
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.54 E-value=3 Score=36.88 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=27.3
Q ss_pred CCCcCcccCCCCC-CCCCEEEccccCcccccccccC
Q 001243 704 HPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 704 ~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...+|++|...=. ...+-+.|..|++.||..|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred CCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence 3578999987421 1357899999999999999863
No 142
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.89 E-value=5.2 Score=36.94 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=33.9
Q ss_pred cccccccCcC--CceeecCCcCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCchh
Q 001243 828 DVCCICRHKH--GICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSLE 885 (1116)
Q Consensus 828 ~~C~iC~~k~--GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~~ 885 (1116)
..|.+|+... +.+|.|. .|...||..|....--. .+.+.| ||+.....
T Consensus 17 ~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~----~P~g~W----~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPE----IPRGIW----RCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSS----CCSSCC----CCHHHHHH
T ss_pred CCCccCCCcCCCCCEEEcC--CCCchhccccCCCCccc----CCCCCc----CCccCcCc
Confidence 6799999852 4689999 89999999999632211 123445 88877553
No 143
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=47.55 E-value=5 Score=33.98 Aligned_cols=33 Identities=36% Similarity=0.816 Sum_probs=26.9
Q ss_pred CCCcCcccCCCCCCCCCEEEccccCcccccccccC
Q 001243 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYRN 738 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi 738 (1116)
...+|+.|.+.= ..+-+.|..|++.+|..|...
T Consensus 21 ~pt~C~~C~~~i--~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 21 GPGWCDLCGREV--LRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp CCEECTTTCSEE--CSCCEECTTTSCEECHHHHTT
T ss_pred CCeEchhcchhh--hhCccEeCCCCCeEehhhhhh
Confidence 346899998743 467789999999999999853
No 144
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=47.53 E-value=20 Score=30.77 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=41.9
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.|+..||++..+...+.+++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 11 ~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~ 64 (82)
T 3s8q_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 467789999999999999999999999999877654 34555666667776664
No 145
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=47.31 E-value=6.1 Score=41.18 Aligned_cols=29 Identities=34% Similarity=0.902 Sum_probs=25.1
Q ss_pred cccccccCcCCceeecCCcCcccccchhhhhh
Q 001243 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
..|.+|+.. |-.|.|. .|...||..|...
T Consensus 8 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~p 36 (207)
T 3u5n_A 8 DWCAVCQNG-GDLLCCE--KCPKVFHLTCHVP 36 (207)
T ss_dssp SSBTTTCCC-EEEEECS--SSSCEECTTTSSS
T ss_pred CCCCCCCCC-CceEEcC--CCCCccCCccCCC
Confidence 679999974 7888999 8999999999754
No 146
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.24 E-value=7.4 Score=35.14 Aligned_cols=50 Identities=32% Similarity=0.727 Sum_probs=38.6
Q ss_pred CCCCcCcccCCCCC-CCCCEEEccccCcccccccccCccCCCCceeccccccc
Q 001243 703 EHPRSCDICRRSET-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 703 e~d~~CsVC~~~E~-~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
+....|.-|...=. ..|.-..|..|...|=+.| ++.. ..+.|+|-.|...
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C-rv~~-~~~~W~C~VC~k~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC-RIQE-SNGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS-EEEC-STTCEEEHHHHSS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc-cccC-CCCCEEEeeCchh
Confidence 34567999998543 5678889999999999999 4443 2378999999764
No 147
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=46.52 E-value=21 Score=29.49 Aligned_cols=53 Identities=6% Similarity=0.105 Sum_probs=39.5
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhc--CChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIG--ISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g--~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.|+..||++..+...+.+++|..+| +|+.+|..-.. ......+.-.+|.+.|.
T Consensus 8 ~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~ 63 (71)
T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYG 63 (71)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 3677899999999999999999999 99998866544 23344455556666554
No 148
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=46.31 E-value=22 Score=36.76 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=41.4
Q ss_pred cCCCCCCCCCEEEccccCcccccccccCccCCCCceecccccccccCCCCCCCCCCccCCCccccccccCCCCC-Cccee
Q 001243 711 CRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEELLSSRSSGAPSVNFWEKPYFVAECSLCGGTT-GAFRK 789 (1116)
Q Consensus 711 C~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~~~~~~s~~~~vn~~~~p~~~~~C~LCp~~g-GALK~ 789 (1116)
|+..-..+-.+|+|.+|..-||..|.+...-+ |... . ......|..|...+ .-|++
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~--------~lp~-------------~--~fY~F~C~~C~~~g~E~f~R 66 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSS--------CLPF-------------M--TNYSFHCNVCHHSGNTYFLR 66 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTT--------CCTT-------------C--CSEEEECTTTSTTSSCEEEE
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccC--------cccc-------------c--eeEEEEccccCCCCcceeEe
Confidence 44432235679999999999999999744311 1100 0 01255677776544 34555
Q ss_pred ccCCchhhhc-ccccc
Q 001243 790 SANGQWVHAF-CAEWV 804 (1116)
Q Consensus 790 T~~g~WVHV~-CALW~ 804 (1116)
. .-.|+|+. .|||+
T Consensus 67 ~-~~~w~~v~~laLyN 81 (177)
T 3rsn_A 67 K-QANLKEMCLSALAN 81 (177)
T ss_dssp C-CCCHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHh
Confidence 4 34699974 55665
No 149
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=46.21 E-value=10 Score=33.13 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||.-|.+.|.+++.|||..+|+|..++...|
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46777777899999999999999999887665
No 150
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=45.97 E-value=23 Score=30.59 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=42.9
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc--ccccchhhHHHHHHhh
Q 001243 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (1116)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~--~~~~~~~~~k~~~wl~ 272 (1116)
.+|..-||++-.+..++.+++|..+|||..+|..-... .....+.-.+|.+.|.
T Consensus 9 ~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~ 64 (78)
T 3qq6_A 9 HMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 64 (78)
T ss_dssp TTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 46788899999999999999999999999998877653 4555566667766664
No 151
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=45.94 E-value=20 Score=31.55 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=42.1
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
..|...||++..+...+..++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 12 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~ 66 (91)
T 1x57_A 12 LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIG 66 (91)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3578899999999999999999999999998876554 33445555566766665
No 152
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=45.86 E-value=21 Score=32.25 Aligned_cols=55 Identities=16% Similarity=0.322 Sum_probs=42.9
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
...+...|+++.++..++.+++|..+|||+.+|-.-+. ......+.-.+|.+.|.
T Consensus 16 ~~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 71 (104)
T 3cec_A 16 PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALG 71 (104)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHC
Confidence 45678889999999999999999999999999887765 33455566666766554
No 153
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=44.89 E-value=12 Score=33.60 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=25.5
Q ss_pred HHHHHHHhhh------CCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDR------GKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~------gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..||.-|-+. |.++|.|||.++|+|+.++..-|
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3444444445 99999999999999998887665
No 154
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=43.93 E-value=24 Score=30.75 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=41.9
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccc--cccchhhHHHHHHhhh
Q 001243 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADG--TFASDLQCKLVKWLSN 273 (1116)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~--~~~~~~~~k~~~wl~~ 273 (1116)
..+...||++.++...+.+++|..+|||..+|..-+... ....+.-.+|.+.|.-
T Consensus 17 ~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~ 73 (83)
T 2a6c_A 17 SQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGL 73 (83)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCC
Confidence 345677899999999999999999999999988776532 2455555677776653
No 155
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=43.89 E-value=12 Score=38.83 Aligned_cols=49 Identities=8% Similarity=-0.025 Sum_probs=29.9
Q ss_pred cccccCc---CCceeecCCcCcccccchhhhhhcCceEEEeeCCCceeeeecCCCCch
Q 001243 830 CCICRHK---HGICIKCNYGNCQTTFHPTCARSAGFYLNVKSTGGNFQHKAYCEKHSL 884 (1116)
Q Consensus 830 C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~~aG~~~~~k~~~g~~~~~iyC~kHs~ 884 (1116)
=+||+.. .-..++|. .|.++||..|-+...-.+ .+..+.|.+.|..=++
T Consensus 7 yCYCG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~----lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 7 SVDEENGRQLGEVELQCG--ICTKWFTADTFGIDTSSC----LPFMTNYSFHCNVCHH 58 (177)
T ss_dssp ----CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTC----CTTCCSEEEECTTTST
T ss_pred EEEcCCCCCCCceeEeec--cccceecHHHhcccccCc----cccceeEEEEccccCC
Confidence 3578874 44588999 899999999997432111 1223456677876554
No 156
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=43.83 E-value=9.8 Score=34.35 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=29.0
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChh-hhhhccc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPD-LLKTTLA 255 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~-~~~a~l~ 255 (1116)
..||.-|-.+|.+++++||.++||++. ++...|.
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~ 48 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLI 48 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHH
Confidence 456666777999999999999999999 9888763
No 157
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=43.07 E-value=25 Score=29.94 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=39.0
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc-ccccchhhHHHHHHhhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSN 273 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~-~~~~~~~~~k~~~wl~~ 273 (1116)
.++..||++..+...+.+++|..+|||+.+|..-... .....+.-.+|++.|..
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~ 64 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVAS 64 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHcc
Confidence 4678899999999999999999999999988776542 22222223555555543
No 158
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=42.77 E-value=22 Score=30.49 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=40.9
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.+...+|++..+...+-+++|..+|||..+|-.-+. ......+.-.+|.+.|.
T Consensus 12 ~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~ 65 (80)
T 3kz3_A 12 RLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILK 65 (80)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 466788888888889999999999999999887665 33445566667777665
No 159
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=42.35 E-value=23 Score=32.39 Aligned_cols=55 Identities=9% Similarity=0.200 Sum_probs=42.9
Q ss_pred CcchHHHHHH-HhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 218 ALNFTLILKK-LIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 218 ~~~~~~~lkk-li~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
...+...|++ |......+..++|..+|||+.+|..-.. ......+.-.+|.+.|.
T Consensus 8 ~~~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~ 64 (113)
T 2eby_A 8 PTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFD 64 (113)
T ss_dssp CCCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3467888998 8999999999999999999999877665 33455566667766664
No 160
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=42.33 E-value=11 Score=31.04 Aligned_cols=29 Identities=24% Similarity=0.754 Sum_probs=23.3
Q ss_pred CcCcccCCCCCCCCCEEEccccCccccccccc
Q 001243 706 RSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 706 ~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG 737 (1116)
.+|++|...=- .-+.|..|+..+|+.|-.
T Consensus 15 t~C~~C~k~i~---~G~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMI---FGVKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSC---CEEEETTTTEEESSSCTT
T ss_pred cCccccCceeE---CcCCCCCCCCccchhhcC
Confidence 57999987422 238999999999999975
No 161
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=42.20 E-value=11 Score=34.10 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=32.2
Q ss_pred CCCCcch-HHHHHHHhhhC---CcchhhhhhhhcCChhhhhhcc
Q 001243 215 PSDALNF-TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 215 ~~~~~~~-~~~lkkli~~g---kv~~~~~a~~~g~s~~~~~a~l 254 (1116)
+|-+.+. .-||+-|.+.| .+++++||.++|+|.-+|...|
T Consensus 5 ~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3334444 56888888899 9999999999999999888886
No 162
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.02 E-value=17 Score=32.31 Aligned_cols=33 Identities=21% Similarity=0.561 Sum_probs=26.8
Q ss_pred CCcccccccCcCCceeecCCcCcccccchhhhhhc
Q 001243 826 GIDVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 826 ~r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
....|.||....-..+.|. .|...||..|..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kW 46 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKY 46 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHH
T ss_pred CCCcCcchhhHcccCCccC--CCCchhhHHHHHHH
Confidence 3478999998655567898 99999999999653
No 163
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=41.92 E-value=10 Score=37.98 Aligned_cols=30 Identities=27% Similarity=0.664 Sum_probs=26.1
Q ss_pred cccccccCcCCceeecCCcCcccccchhhhhhc
Q 001243 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 828 ~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
..|.+|+. +|..+-|. .|...||..|....
T Consensus 64 d~C~vC~~-GG~LlcCD--~Cpr~Fh~~Cl~p~ 93 (142)
T 2lbm_A 64 EQCRWCAE-GGNLICCD--FCHNAFCKKCILRN 93 (142)
T ss_dssp CSCSSSCC-CSSEEECS--SSCCEEEHHHHHHH
T ss_pred CeecccCC-CCcEEeCC--CCCCeeeHhhcCCC
Confidence 67999998 58888898 99999999999754
No 164
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=40.88 E-value=8.4 Score=45.09 Aligned_cols=29 Identities=38% Similarity=0.918 Sum_probs=24.9
Q ss_pred cccccccCc---CCceeecCCcCcccccchhhhh
Q 001243 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 828 ~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
...++|++. .|.+|+|. .|..+||..|.-
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD--~C~~WfH~~CVg 36 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECD--MCQDWFHGSCVG 36 (447)
T ss_dssp CEETTTTEECCTTSCEEECT--TTCCEEEHHHHT
T ss_pred CeEEeCCCcCCCCCCeEEcC--CCCcccccccCC
Confidence 356799985 58999999 899999999983
No 165
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=40.75 E-value=12 Score=34.23 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=25.8
Q ss_pred CCcCcccCCCC-C-CCCCEEEccccCccccccccc
Q 001243 705 PRSCDICRRSE-T-ILNPILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 705 d~~CsVC~~~E-~-~~N~IL~Cd~C~laVHq~CYG 737 (1116)
..+|+||...= . ..-.-+.|.-|+..||..||.
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 46899999752 1 223677999999999999985
No 166
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=40.50 E-value=9.1 Score=39.58 Aligned_cols=29 Identities=31% Similarity=0.891 Sum_probs=25.2
Q ss_pred cccccccCcCCceeecCCcCcccccchhhhhh
Q 001243 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
..|.+|+.. |..+.|. .|...||..|...
T Consensus 3 ~~C~~C~~~-g~ll~Cd--~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 3 TICRVCQKP-GDLVMCN--QCEFCFHLDCHLP 31 (189)
T ss_dssp CCBTTTCCC-SSCCCCT--TTCCBCCSTTSTT
T ss_pred CcCccCCCC-CceeECC--CCCchhccccCCC
Confidence 469999974 7888999 9999999999865
No 167
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=39.83 E-value=47 Score=30.55 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=39.8
Q ss_pred CcchHHHHHHHhh--hCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 218 ALNFTLILKKLID--RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 218 ~~~~~~~lkkli~--~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
...|...||+|.. ...++.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 32 ~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 89 (107)
T 2jvl_A 32 GKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLN 89 (107)
T ss_dssp CHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 3467889999998 8889999999999999988866543 22333344455555553
No 168
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=39.51 E-value=15 Score=33.77 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=29.5
Q ss_pred HHHHHHHhhhC-CcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~g-kv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.-||..|+..| ++++.+||.++|+|.-++..+|
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L 54 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKL 54 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 56788888888 9999999999999999998886
No 169
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=39.23 E-value=31 Score=31.87 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=42.4
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.|+.-||+|..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 21 ~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 74 (114)
T 3vk0_A 21 VLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALG 74 (114)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 468889999999999999999999999998877654 34556666677777665
No 170
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=38.92 E-value=28 Score=29.76 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=40.2
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.|+..||++..+-..+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 14 ~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~ 67 (83)
T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIG 67 (83)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 357788999888889999999999999988877654 33455555566666553
No 171
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=37.80 E-value=9.7 Score=34.87 Aligned_cols=34 Identities=26% Similarity=0.752 Sum_probs=26.9
Q ss_pred CCCcCcccCCCC-CCCCC--EEEccccCccccccccc
Q 001243 704 HPRSCDICRRSE-TILNP--ILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 704 ~d~~CsVC~~~E-~~~N~--IL~Cd~C~laVHq~CYG 737 (1116)
...+|+.|.+.= ....+ -+.|..|++.+|..|..
T Consensus 34 ~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 34 FPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp SCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred CCcchhhcCHhhhccccCCCCCEecCCCCccchhHhC
Confidence 347899998742 22455 89999999999999986
No 172
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=37.76 E-value=17 Score=39.28 Aligned_cols=51 Identities=12% Similarity=0.298 Sum_probs=43.8
Q ss_pred hCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhcccccccc
Q 001243 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYLGGLL 281 (1116)
Q Consensus 231 ~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~~~~~~~~ 281 (1116)
+++++++|||.+.|+|.-+|--+|+ ....++....||.+-.+..-|.+...
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~ 59 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKI 59 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 5679999999999999999999998 56788999999999999988876543
No 173
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=37.39 E-value=20 Score=33.77 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=39.3
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhccc---c--------------ccccchhhHHHHHHhhhccc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTLA---D--------------GTFASDLQCKLVKWLSNHAY 276 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~---~--------------~~~~~~~~~k~~~wl~~~~~ 276 (1116)
.||.-|.+.|..++.+||..+|||+-+|.-.|. + -.+.+.--..++.||.+|+.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~~~ 116 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAHKK 116 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHHHhc
Confidence 467777778999999999999999988866543 1 12344555667777777664
No 174
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=37.26 E-value=33 Score=31.24 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=41.9
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.|+.-||+|..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 28 ~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 568889999999999999999999999999877654 34555566666666654
No 175
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=36.98 E-value=31 Score=31.12 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=39.8
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc--ccccchhhHHHHHHhh
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD--GTFASDLQCKLVKWLS 272 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~--~~~~~~~~~k~~~wl~ 272 (1116)
|+..||++..+...+..++|..+|||+.+|..-... ...+.+.-.+|.+.|.
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~ 55 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLD 55 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 356788999999999999999999999998776543 3445555567766664
No 176
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=36.94 E-value=11 Score=44.68 Aligned_cols=29 Identities=34% Similarity=0.953 Sum_probs=24.3
Q ss_pred cccccccCc---CCceeecCCcCcccccchhhhh
Q 001243 828 DVCCICRHK---HGICIKCNYGNCQTTFHPTCAR 858 (1116)
Q Consensus 828 ~~C~iC~~k---~GAcIqCs~~~C~~sFHvtCA~ 858 (1116)
...++|++. .|.+|+|. .|..+||..|.-
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd--~C~~WfH~~Cvg 68 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECD--ICKDWFHGSCVG 68 (488)
T ss_dssp CEETTTTEECCTTSCEEEBT--TTCCEEEHHHHT
T ss_pred CeEEeCCCcCCCCCCeEEcc--CCCCceeeeecC
Confidence 344599985 68899999 899999999983
No 177
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=36.81 E-value=20 Score=28.71 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=24.4
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..+..|..+| .+.++||..+|||+-+|..-|
T Consensus 22 ~~i~~l~~~g-~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 22 SVAHELAKMG-YTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp HHHHHHHHTT-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 4455667667 499999999999999887654
No 178
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=36.12 E-value=21 Score=36.70 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=43.4
Q ss_pred CCCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHH
Q 001243 216 SDALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLV 268 (1116)
Q Consensus 216 ~~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~ 268 (1116)
-+-.+-+..+++|++.| .+..+||..+|.|+-.|...|.=..+.|.+|-.|.
T Consensus 36 L~piE~A~a~~~L~~~G-~t~eeiA~~lG~s~s~V~~~LrLl~Lp~~v~~~v~ 87 (178)
T 1r71_A 36 LTPREIADFIGRELAKG-KKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFN 87 (178)
T ss_dssp CCHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHH
Confidence 34466789999999997 69999999999999999988876778887776654
No 179
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=35.94 E-value=33 Score=29.95 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=38.0
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.+.-.||++......+.+++|..+|||..+|..-.. ......+.-.+|.+.|.
T Consensus 17 ~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~ 70 (92)
T 1lmb_3 17 RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILK 70 (92)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 345566666678889999999999999998877654 23344455566666664
No 180
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=35.87 E-value=21 Score=40.32 Aligned_cols=37 Identities=24% Similarity=0.494 Sum_probs=30.2
Q ss_pred CCCCCCcCcccCCCC-CCCCCEEEccccCccccccccc
Q 001243 701 SKEHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 701 ~ke~d~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYG 737 (1116)
+.....+|.+|...= +..++-..|..|+..||..|.+
T Consensus 353 ~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 353 SFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred cCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 344568999999753 3467899999999999999986
No 181
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=35.00 E-value=13 Score=33.40 Aligned_cols=30 Identities=23% Similarity=0.744 Sum_probs=23.7
Q ss_pred ccccccCc--CCceeecCCcCcccccchhhhhhc
Q 001243 829 VCCICRHK--HGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 829 ~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
.|.+|++. .+.+|.|. .|...||..|....
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~Pp 59 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPP 59 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSC
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCc
Confidence 36677764 46789999 99999999998643
No 182
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=34.82 E-value=27 Score=29.99 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=34.4
Q ss_pred HHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHhh
Q 001243 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 225 lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl~ 272 (1116)
|++|++.-. +..++|..+|||+.+|-.-.....+..+.-.+|.+.|.
T Consensus 4 l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p~~~l~~ia~~l~ 50 (79)
T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTN 50 (79)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCCGGGHHHHHHHTT
T ss_pred HHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHC
Confidence 566666655 99999999999999987766533344666667777765
No 183
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=34.47 E-value=25 Score=31.01 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~ 255 (1116)
..||.-|-+.|.+++.+||..+|+|+-++...|.
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4567666666699999999999999998876653
No 184
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=34.36 E-value=36 Score=29.76 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHh
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl 271 (1116)
+-+.+.|- +...+..++|..+|||+-+|...+.. -.|.+..+|-+-|
T Consensus 12 ~ri~~~l~-~~glT~~~LA~~~Gvs~stls~~~~~--~~p~~~~~IA~aL 58 (74)
T 1neq_A 12 ADVIAGLK-KRKLSLSALSRQFGYAPTTLANALER--HWPKGEQIIANAL 58 (74)
T ss_dssp HHHHHHHH-TTSCCHHHHHHHHSSCHHHHHHTTTS--SCHHHHHHHHHHT
T ss_pred HHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHcC--CCccHHHHHHHHH
Confidence 44444444 55589999999999999999988754 2365555554444
No 185
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=33.77 E-value=12 Score=39.97 Aligned_cols=30 Identities=23% Similarity=0.706 Sum_probs=22.5
Q ss_pred cccccccCc--CCceeecCCcCcccccchhhhhh
Q 001243 828 DVCCICRHK--HGICIKCNYGNCQTTFHPTCARS 859 (1116)
Q Consensus 828 ~~C~iC~~k--~GAcIqCs~~~C~~sFHvtCA~~ 859 (1116)
-.|.+|+.. .|.++.|. .|...||..|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~P 206 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDP 206 (226)
T ss_dssp TSCSSSCCCCC--CCEECS--SSCCEECSCC--C
T ss_pred CCCcCCCCCCCCCCeEEcC--CCCcceeCccCCC
Confidence 358999874 67889999 9999999999864
No 186
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=32.67 E-value=23 Score=36.55 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhh
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQ 264 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~ 264 (1116)
..||..|-+.|.|++.|+|..+|+|++++.--|.+-.- |+|-
T Consensus 15 ~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~-~~l~ 56 (190)
T 4a0z_A 15 EAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI-PELR 56 (190)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC-CCHH
T ss_pred HHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC-cchh
Confidence 57888899999999999999999999999988753322 4443
No 187
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=32.24 E-value=40 Score=30.82 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=43.0
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.-.|..-||+|..+...+.+++|..+|||+.+|-.-.. ......+.-.+|.+.|.
T Consensus 7 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~ 62 (114)
T 3op9_A 7 QHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFH 62 (114)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 34578889999999999999999999999999887654 33445555667777664
No 188
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=31.91 E-value=4 Score=34.70 Aligned_cols=50 Identities=24% Similarity=0.435 Sum_probs=29.3
Q ss_pred CCCCcCcccCCCCCCCCC-EEE--ccccCcccccccccCccCCCCceeccccccc
Q 001243 703 EHPRSCDICRRSETILNP-ILI--CSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 703 e~d~~CsVC~~~E~~~N~-IL~--Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
++...|-||+.... ++ +.- |.+.-..||+.|.--=....+.+.|+.|.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCe
Confidence 34568999997432 22 333 4445559999997311111235677777653
No 189
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=31.40 E-value=26 Score=41.73 Aligned_cols=37 Identities=22% Similarity=0.530 Sum_probs=30.0
Q ss_pred CCCCcCcccCCCC-CCCCCEEEccccCcccccccccCc
Q 001243 703 EHPRSCDICRRSE-TILNPILICSGCKVAVHLDCYRNA 739 (1116)
Q Consensus 703 e~d~~CsVC~~~E-~~~N~IL~Cd~C~laVHq~CYGi~ 739 (1116)
.....|++|...= +...+-+.|..|++.||..|.+..
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v 564 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV 564 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC
Confidence 4567999999753 345788999999999999998743
No 190
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.86 E-value=31 Score=31.74 Aligned_cols=35 Identities=23% Similarity=0.647 Sum_probs=28.4
Q ss_pred CCEEEccccCc-ccccccccCccCCCCceeccccccc
Q 001243 719 NPILICSGCKV-AVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 719 N~IL~Cd~C~l-aVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
-.||.|..|+- .+|..|..+. .....|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~-~~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLR-PNSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCC-TTCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhCCc-CCCCCEECCcCccc
Confidence 47999999985 6999998754 34668999999865
No 191
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=30.79 E-value=42 Score=30.81 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=43.7
Q ss_pred cchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhc
Q 001243 219 LNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNH 274 (1116)
Q Consensus 219 ~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~ 274 (1116)
..|+..||++..+...+.+++|..+|||..+|..-.. ......+.-.+|.+.|.=.
T Consensus 27 ~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~ 83 (117)
T 3f52_A 27 EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGAS 83 (117)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 3578889999999999999999999999999877654 3345666667777766533
No 192
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.56 E-value=24 Score=30.23 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.5
Q ss_pred HHHHHHhhhC-CcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRG-KVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~g-kv~~~~~a~~~g~s~~~~~a~l 254 (1116)
-||+-|-+.| -+++.+||.++|+|..+|...|
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4777776664 5999999999999988876554
No 193
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=30.53 E-value=20 Score=38.49 Aligned_cols=46 Identities=24% Similarity=0.554 Sum_probs=31.4
Q ss_pred CCcCcccCCCCCCCCCEEEccccCcccccccccCccCCCCceecccccc
Q 001243 705 PRSCDICRRSETILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEE 753 (1116)
Q Consensus 705 d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~ 753 (1116)
-..|.+|.+-=. .-+.|..|+..+|..|+..-....+.-.|..|..
T Consensus 180 i~~C~iC~~iv~---~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 180 VKICNICHSLLI---QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225 (238)
T ss_dssp CCBCTTTCSBCS---SCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCC
T ss_pred CCcCcchhhHHh---CCcccCccChHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 467999998533 2389999999999999853222223345666654
No 194
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=30.30 E-value=45 Score=33.32 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=41.0
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
.++..||+|..+...+.+++|..+|||..+|..-.. ....+.+.-.+|.+.|.
T Consensus 11 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~ 64 (192)
T 1y9q_A 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 64 (192)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 467889999999999999999999999998877654 33444455566766664
No 195
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=29.61 E-value=33 Score=36.38 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=41.2
Q ss_pred CCcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHH
Q 001243 217 DALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLV 268 (1116)
Q Consensus 217 ~~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~ 268 (1116)
+-.+-+..+++|++.| .+..+||..+|+|...|...|.-..+.|+++-.|-
T Consensus 119 ~~~E~a~~~~~l~~~g-~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~ 169 (230)
T 1vz0_A 119 SPVEEARGYQALLEMG-LTQEEVARRVGKARSTVANALRLLQLPPEALEALE 169 (230)
T ss_dssp CHHHHHHHHHHHHHTT-CCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456688899999665 79999999999999999988776677777766543
No 196
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.14 E-value=16 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=28.4
Q ss_pred CEEEccccCcccccccccCcc--------CC-CCceeccccccc
Q 001243 720 PILICSGCKVAVHLDCYRNAK--------ES-TGPWYCELCEEL 754 (1116)
Q Consensus 720 ~IL~Cd~C~laVHq~CYGi~~--------ip-eg~WlCd~C~~~ 754 (1116)
.||.|+.|.--+|-.|-|+.. .| ...|.|..|...
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 378999999999999998863 24 457999999764
No 197
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=29.13 E-value=27 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.2
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
-||+.|...|..++.++|..+|+|+-++---|
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 47777888999999999999999998876553
No 198
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=28.82 E-value=23 Score=27.88 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.9
Q ss_pred CcchhhhhhhhcCChhhhhhccc
Q 001243 233 KVNVKDIASDIGISPDLLKTTLA 255 (1116)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a~l~ 255 (1116)
|+.|.++|.|+|++++.|-..|.
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~ 24 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFA 24 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 57789999999999998887765
No 199
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.68 E-value=27 Score=33.77 Aligned_cols=32 Identities=9% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||+-|-+.|.++.++||.++|+|+.++...|
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 44 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRI 44 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999887664
No 200
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=28.60 E-value=22 Score=35.01 Aligned_cols=30 Identities=27% Similarity=0.664 Sum_probs=25.8
Q ss_pred cccccccCcCCceeecCCcCcccccchhhhhhc
Q 001243 828 DVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 828 ~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
..|.+|+. +|-.+-|. .|...||..|....
T Consensus 58 ~~C~vC~d-GG~LlcCd--~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 58 EQCRWCAE-GGNLICCD--FCHNAFCKKCILRN 87 (129)
T ss_dssp SSCTTTCC-CSEEEECS--SSSCEEEHHHHHHH
T ss_pred CcCeecCC-CCeeEecC--CCchhhhHHHhCCC
Confidence 67999997 48888887 99999999999764
No 201
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.30 E-value=9.5 Score=35.43 Aligned_cols=49 Identities=22% Similarity=0.549 Sum_probs=37.8
Q ss_pred CCcCcccCCCC--C-CCCCEEEccccCcccccccccCccCCCCceeccccccc
Q 001243 705 PRSCDICRRSE--T-ILNPILICSGCKVAVHLDCYRNAKESTGPWYCELCEEL 754 (1116)
Q Consensus 705 d~~CsVC~~~E--~-~~N~IL~Cd~C~laVHq~CYGi~~ipeg~WlCd~C~~~ 754 (1116)
..+|.||.+.- + +++..|-|..|...|-+.||-- ...++.-.|..|...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY-ErkeG~q~CpqCktr 67 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY-ERREGTQNCPQCKTR 67 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH-HHHTSCSSCTTTCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHH-HHhccCccccccCCc
Confidence 46899999853 2 4678999999999999999942 234677788888764
No 202
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.28 E-value=25 Score=34.76 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=28.9
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
-||+.|-+.|.+++++||.++|+|+.++..-|
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999988764
No 203
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=28.12 E-value=33 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=24.0
Q ss_pred CCCcCcccCCCCCCCCCEEEccccCccccccccc
Q 001243 704 HPRSCDICRRSETILNPILICSGCKVAVHLDCYR 737 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N~IL~Cd~C~laVHq~CYG 737 (1116)
....|.||++.-...+..+..-.|+-.||..|..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~ 37 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYE 37 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHH
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHH
Confidence 3467999998532234456667799999999974
No 204
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=27.27 E-value=50 Score=27.52 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=33.2
Q ss_pred HHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchh-hHHHHHHhhhcc
Q 001243 225 LKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDL-QCKLVKWLSNHA 275 (1116)
Q Consensus 225 lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~-~~k~~~wl~~~~ 275 (1116)
++++|+.|. +-.++|..+|||+.+|-.-. ...|.. ..+|-+.|...+
T Consensus 3 ~~~~i~~~~-tq~~lA~~lGvs~~~Vs~we---~~~p~~~~~~i~~~~~g~v 50 (61)
T 1rzs_A 3 KKDVIDHFG-TQRAVAKALGISDAAVSQWK---EVIPEKDAYRLEIVTAGAL 50 (61)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHCC---SBCCHHHHHHHHHHTTSCS
T ss_pred HHHHHHHcC-CHHHHHHHhCCCHHHHHHHH---hhCCHHHHHHHHHHHCCCc
Confidence 467787775 99999999999999997664 334543 345666655444
No 205
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=27.24 E-value=52 Score=27.01 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=24.4
Q ss_pred CcchHHHHHHHhhhCCcc----hhhhhhhhcCChhhhhh
Q 001243 218 ALNFTLILKKLIDRGKVN----VKDIASDIGISPDLLKT 252 (1116)
Q Consensus 218 ~~~~~~~lkkli~~gkv~----~~~~a~~~g~s~~~~~a 252 (1116)
+.+|-+-+..+++.|. + +.+||.++||++.+|..
T Consensus 7 s~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~ 44 (59)
T 2glo_A 7 TPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQK 44 (59)
T ss_dssp CHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHH
Confidence 4566433366777664 7 99999999999877643
No 206
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=27.15 E-value=34 Score=36.61 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=42.5
Q ss_pred CcchhhhhhhhcCChhhhhhcccc-ccccchhhHHHHHHhhhccccccc
Q 001243 233 KVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSNHAYLGGL 280 (1116)
Q Consensus 233 kv~~~~~a~~~g~s~~~~~a~l~~-~~~~~~~~~k~~~wl~~~~~~~~~ 280 (1116)
|++++|||.+.|+|.-++--+|+. ...++....||.+-.+..=|.+..
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~pn~ 50 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNA 50 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 589999999999999999999994 468899999999999888887654
No 207
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=26.79 E-value=36 Score=31.21 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=37.1
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccccccccchhhHHHHHHh
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLADGTFASDLQCKLVKWL 271 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~~~~~~~~~~k~~~wl 271 (1116)
+-.-||.|.+ ..+=+++|.++|||.-+|.|-. ...+.|.|..+|-+-|
T Consensus 22 ~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIe-nG~~~PsL~~kIAk~f 69 (83)
T 2l1p_A 22 VRNALKDLLK--DMNQSSLAKECPLSQSMISSIV-NSTYYANVSAAKCQEF 69 (83)
T ss_dssp HHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHH-TCSSCCCCCSHHHHHH
T ss_pred HHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHH-cCCCCCCchHHHHHHH
Confidence 4556888887 8899999999999999997765 5555577777776644
No 208
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.73 E-value=31 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=28.3
Q ss_pred HHHHHHHhhhC---CcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRG---KVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~g---kv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.-||.-|-+.| .+++++||.++|+|.-+|...|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 45777778888 9999999999999998887765
No 209
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=26.63 E-value=31 Score=33.24 Aligned_cols=32 Identities=16% Similarity=0.426 Sum_probs=28.1
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||+-|-+.|.++..+||.++|+|+.++...|
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888899999999999999999887654
No 210
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=26.42 E-value=31 Score=33.42 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=28.5
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||+-|-+.|.++..+||.++|+|+.++..-|
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888999999999999999999887664
No 211
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.24 E-value=31 Score=34.69 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=28.9
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..||+.|.+.|.+++.+||.++|+|+.++..-|
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl 62 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHERI 62 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 368888888999999999999999999887664
No 212
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=26.19 E-value=31 Score=37.51 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=41.8
Q ss_pred hCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhhhcccc-cc
Q 001243 231 RGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLSNHAYL-GG 279 (1116)
Q Consensus 231 ~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~~~~~~-~~ 279 (1116)
+.+++++|||.+.|+|.-+|--+|+ ....++....||.+-.+..-|. +.
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn 57 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPD 57 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC----
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4689999999999999999999998 4568899999999999988886 54
No 213
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.85 E-value=31 Score=30.61 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=25.2
Q ss_pred ccccccccccCceeeCCCCCCCcccchhhhhh
Q 001243 57 LVCNICRVKCGACVRCSHGTCRTSFHPICARE 88 (1116)
Q Consensus 57 LkC~iC~~k~GAcIqCs~~~C~~~FHvtCA~~ 88 (1116)
..|.||+.-.-..+.|. .|...||.-|...
T Consensus 16 ~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp CBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred CcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 58999997755678898 9999999999953
No 214
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=25.47 E-value=61 Score=30.19 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=42.6
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
--.|..-||+|......+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 10 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~ 65 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLN 65 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 34678889999999999999999999999998866544 33455566667776665
No 215
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.46 E-value=33 Score=33.23 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=28.0
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||+-|.+.|.+++++||.++|+|+.++..-|
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHERI 42 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 57888888899999999999999999886654
No 216
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=24.89 E-value=28 Score=31.09 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.0
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||.-|.+ |.+++.+||.++|+|+-++...|
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L 57 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQLSQSALSQHL 57 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 46766665 99999999999999999887664
No 217
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=24.59 E-value=55 Score=30.33 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=40.0
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
+..-||+|......+.+++|..+|||+.+|..-.. ....+.+.-.+|.+.|.
T Consensus 24 ~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~ 76 (111)
T 3mlf_A 24 AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFN 76 (111)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 44557888888899999999999999998876644 34456666677777775
No 218
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.45 E-value=28 Score=31.73 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.-||.-|-..| .++++||.++|||..++..-|
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 34555555688 999999999999999888765
No 219
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=24.30 E-value=36 Score=32.23 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=27.9
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||..|-+.|..+..++|.++|+|+.++...|
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 39 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRV 39 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46777777899999999999999999998775
No 220
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=24.12 E-value=34 Score=39.09 Aligned_cols=33 Identities=24% Similarity=0.588 Sum_probs=25.0
Q ss_pred CCCcCcccCCCCCCCC--CEEEcc--ccCcccccccc
Q 001243 704 HPRSCDICRRSETILN--PILICS--GCKVAVHLDCY 736 (1116)
Q Consensus 704 ~d~~CsVC~~~E~~~N--~IL~Cd--~C~laVHq~CY 736 (1116)
....|.||...-...+ +-..|+ .|+-.+|..|.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL 343 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCL 343 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHH
Confidence 4567999998543223 346898 79999999997
No 221
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=23.88 E-value=37 Score=32.79 Aligned_cols=33 Identities=15% Similarity=0.499 Sum_probs=28.4
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..||.-|-+.|.++..+||.++|+|+.++...|
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSRV 42 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 367888888899999999999999999886654
No 222
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=23.72 E-value=83 Score=27.47 Aligned_cols=52 Identities=8% Similarity=0.019 Sum_probs=39.2
Q ss_pred hHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHHHhh
Q 001243 221 FTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 221 ~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
|...||++..+-..+.+++|..+|||+.+|-.--. ......+.-.+|.+.|.
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 67 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACE 67 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 67889999999999999999999999988876543 33444455556666554
No 223
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=23.71 E-value=82 Score=31.95 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=37.7
Q ss_pred hhCCcchhhhhhhhcCChhhhhhccc-cccccchhhHHHHH----------Hhhhcccccccc
Q 001243 230 DRGKVNVKDIASDIGISPDLLKTTLA-DGTFASDLQCKLVK----------WLSNHAYLGGLL 281 (1116)
Q Consensus 230 ~~gkv~~~~~a~~~g~s~~~~~a~l~-~~~~~~~~~~k~~~----------wl~~~~~~~~~~ 281 (1116)
.+-..+.++||.++|+|+.-+.|++- ..+++++.--||.+ ||+..-|-|+..
T Consensus 23 ~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~~l~~~P~rg~~~ 85 (156)
T 1dw9_A 23 AKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCID 85 (156)
T ss_dssp HHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHHHTTSBCCCCCCS
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHHHHhcCCcCCCCC
Confidence 45678999999999999999999854 66666666666554 666655554433
No 224
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=23.71 E-value=46 Score=29.43 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=30.9
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA 255 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~ 255 (1116)
.+...||++..+..++.+++|..+|||..+|..-..
T Consensus 4 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356788999999999999999999999998876554
No 225
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.65 E-value=37 Score=33.27 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=28.4
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..||+-|.+.|.+++++||.++|+|+.++..-|
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 367888888999999999999999998886654
No 226
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=23.65 E-value=45 Score=29.61 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred CcchHHHHHHHhhhCCcchhhhhhhhcCChhhhh
Q 001243 218 ALNFTLILKKLIDRGKVNVKDIASDIGISPDLLK 251 (1116)
Q Consensus 218 ~~~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~ 251 (1116)
+.++-.-.-+|++.| .++.+||.++|||+.+|.
T Consensus 24 s~e~k~~~v~~~~~g-~s~~~iA~~~gIs~sTl~ 56 (87)
T 2elh_A 24 TPRDKIHAIQRIHDG-ESKASVARDIGVPESTLR 56 (87)
T ss_dssp CHHHHHHHHHHHHHT-CCHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHHCC-CCHHHHHHHHCcCHHHHH
Confidence 456633333455666 899999999999987664
No 227
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=23.57 E-value=58 Score=29.00 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhh----hhhccc-cccccchhhHHHHHHhh
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDL----LKTTLA-DGTFASDLQCKLVKWLS 272 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~----~~a~l~-~~~~~~~~~~k~~~wl~ 272 (1116)
..-||++..+...+.+++|..+|||+.+ |..-.. ......+.-.+|.+.|.
T Consensus 3 g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~ 58 (98)
T 3lfp_A 3 IRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLK 58 (98)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 4568888888899999999999999998 444332 34455566667777665
No 228
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=23.13 E-value=36 Score=32.76 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=27.8
Q ss_pred HHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 223 LILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 223 ~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
.||+-|-+.|.++.++||..+|+|+.++...|
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 38 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRI 38 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 47778888899999999999999999887664
No 229
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=22.69 E-value=42 Score=30.68 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=38.7
Q ss_pred cHhhHhhcccCceeeccCCccccccccccchhhcccccccccccc-cCceeeCCCCCCCcccchhhhhh
Q 001243 21 FAHLFCSLLMPEVYIEDTMKVEPLMNVGGIKETRMKLVCNICRVK-CGACVRCSHGTCRTSFHPICARE 88 (1116)
Q Consensus 21 WvHv~CALw~PEv~f~~~~~~epV~~V~~I~~~R~~LkC~iC~~k-~GAcIqCs~~~C~~~FHvtCA~~ 88 (1116)
-.|-.||-+-+++.- ...-.-++. +... ....|.+|+.. .|....|. .|.-.+|+.||..
T Consensus 18 ~lhe~Ca~lP~~i~H-p~Hp~H~L~-L~~~----~~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 18 KYDEIAKDWPKKVKH-VLHEEHELE-LTRV----QVYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALN 78 (89)
T ss_dssp HHHHHTSSSCSEECC-STTTTSCEE-EECC----SSCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHC
T ss_pred HHhHHHHcCCceecC-CCCCCCccE-EeeC----CCeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCC
Confidence 479999987555542 211111121 1111 13689999976 56678998 7999999999964
No 230
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=22.08 E-value=46 Score=29.32 Aligned_cols=33 Identities=27% Similarity=0.553 Sum_probs=28.5
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..||.-|...|.+++.+||..+|+|+-++...|
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 557777878899999999999999999887765
No 231
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.96 E-value=37 Score=36.38 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=26.9
Q ss_pred CcccccccCcCCceeecCCcCcccccchhhhhhc
Q 001243 827 IDVCCICRHKHGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 827 r~~C~iC~~k~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
...|.+|+.-....+.|. .|...||..|....
T Consensus 180 i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~ 211 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKY 211 (238)
T ss_dssp CCBCTTTCSBCSSCEECS--SSCCEECHHHHHHH
T ss_pred CCcCcchhhHHhCCcccC--ccChHHHHHHHHHH
Confidence 478999999766668898 59999999999664
No 232
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=21.72 E-value=45 Score=30.48 Aligned_cols=61 Identities=13% Similarity=0.300 Sum_probs=37.8
Q ss_pred hhhhccccccccceeecCccccccCccccCCCCcccccccCc-CCceeecCCcCcccccchhhhhhc
Q 001243 795 WVHAFCAEWVFESTFRRGQVNPVAGMEAFPKGIDVCCICRHK-HGICIKCNYGNCQTTFHPTCARSA 860 (1116)
Q Consensus 795 WVHV~CALW~PEv~f~n~~lepVegie~I~k~r~~C~iC~~k-~GAcIqCs~~~C~~sFHvtCA~~a 860 (1116)
-.|-.|+.+-.++.-..-.--++.- .......|.+|+.. .|..-.|. .|...+|+.||...
T Consensus 18 ~lhe~Ca~lP~~i~Hp~Hp~H~L~L---~~~~~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 18 KYDEIAKDWPKKVKHVLHEEHELEL---TRVQVYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALNE 79 (89)
T ss_dssp HHHHHTSSSCSEECCSTTTTSCEEE---ECCSSCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHCS
T ss_pred HHhHHHHcCCceecCCCCCCCccEE---eeCCCeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCCC
Confidence 4788898876555432100011110 01113689999986 45556798 89999999999754
No 233
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=21.08 E-value=45 Score=29.78 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=25.7
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..||+-| .|.+++.+||..+|+|.-+|...|
T Consensus 34 ~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L 64 (96)
T 1y0u_A 34 RKILRML--DKGRSEEEIMQTLSLSKKQLDYHL 64 (96)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3466666 788999999999999999987764
No 234
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.72 E-value=1e+02 Score=26.11 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=37.8
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcccc-ccccchhhHHHHHHhhhc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTLAD-GTFASDLQCKLVKWLSNH 274 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~~-~~~~~~~~~k~~~wl~~~ 274 (1116)
+.-||.|-.+-..+-+++|..+|||+.+|..--.. ..-.+++ .+|++.|..+
T Consensus 13 g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~-~~l~~~l~~~ 65 (73)
T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPST-IKLLRVLDKH 65 (73)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHH-HHHHHHHCCC
Confidence 55678888899999999999999999888766442 2233333 3777777644
No 235
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=20.69 E-value=56 Score=29.61 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=29.8
Q ss_pred cchHHHHHHHhhhCCc-------chhhhhhhhcCChhhhhhccc
Q 001243 219 LNFTLILKKLIDRGKV-------NVKDIASDIGISPDLLKTTLA 255 (1116)
Q Consensus 219 ~~~~~~lkkli~~gkv-------~~~~~a~~~g~s~~~~~a~l~ 255 (1116)
..++..++..|..|.. ++.++|.++|+|..+|..+|.
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3456677777777653 899999999999999999873
No 236
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=20.57 E-value=42 Score=30.90 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHHHHHHhhhCCcchhhhhhhhcCChhhhhhcc
Q 001243 222 TLILKKLIDRGKVNVKDIASDIGISPDLLKTTL 254 (1116)
Q Consensus 222 ~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l 254 (1116)
..||.-|. .|.+++++||..+|||+-+|...|
T Consensus 28 ~~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L 59 (108)
T 2kko_A 28 LQILDLLA-QGERAVEAIATATGMNLTTASANL 59 (108)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 35676666 599999999999999999887665
No 237
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=20.34 E-value=86 Score=31.25 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=40.0
Q ss_pred chHHHHHHHhhhCCcchhhhhhhhcCChhhhhhccc-cc-cccchhhHHHHHHhh
Q 001243 220 NFTLILKKLIDRGKVNVKDIASDIGISPDLLKTTLA-DG-TFASDLQCKLVKWLS 272 (1116)
Q Consensus 220 ~~~~~lkkli~~gkv~~~~~a~~~g~s~~~~~a~l~-~~-~~~~~~~~k~~~wl~ 272 (1116)
.+...||+|..+...+.+++|..+|||..+|-.-.. .. ..+.+.-.||.+.|.
T Consensus 10 ~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~ 64 (198)
T 2bnm_A 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLG 64 (198)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 467789999999999999999999999998876654 23 344455556666554
Done!