BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001244
(1116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 132/183 (72%), Gaps = 3/183 (1%)
Query: 934 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993
L+ + I + V FDDI + K L+E+V+LP RPELF L P +G+LLFGPP
Sbjct: 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTG--LRAPARGLLLFGPP 157
Query: 994 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053
G GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS++F+D+VD
Sbjct: 158 GNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217
Query: 1054 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1113
S+L R GEH+A R++K EF++ +DG+++ +RVLV+ ATNRP +LDEAV+RR +R
Sbjct: 218 SLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 276
Query: 1114 TCV 1116
V
Sbjct: 277 VYV 279
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 127/171 (74%), Gaps = 3/171 (1%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++DI +E K T+KE+V+ P+ RP++F L P KGILLFGPPGTGKT++ K +A
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
+++GA F +IS SS+TSKW GEGEK V+A+F++A P+V+F+DE+DS+L +R + GEH
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEH 197
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116
E+ R++K EF+V DG T ++R+LV+ ATNRP ++DEA RRL +R +
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYI 248
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/185 (50%), Positives = 128/185 (69%), Gaps = 4/185 (2%)
Query: 933 KLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 992
+L+ D I V + DI + K L+E+V+LP RPELF L P KG+LLFGP
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGP 62
Query: 993 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052
PG GKT+LA+AVATE A F+NIS +S+TSK+ G+GEK V+A+F++A + PS++F+DEV
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 1053 DSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDEAVVRRLP 1111
DS+ + EHEA R++K EF+V +DGL D +R++VLAATNRP +LDEA +RR
Sbjct: 123 DSL-LSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181
Query: 1112 RRTCV 1116
+R V
Sbjct: 182 KRVYV 186
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+D+VD++ G R GE
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 164
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR +
Sbjct: 165 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 214
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+DEVD++ G R GE
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGES 140
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR +
Sbjct: 141 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 190
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 166 bits (419), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+D+VD++ G R GE
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 149
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR +
Sbjct: 150 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 199
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 4/171 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 72
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
TEA + F ++S S + SKW GE EK VK +F++A + PS++F+D+VD++ G R GE
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 131
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116
EA R++K E +V +G+ D + VLVL ATN P+ LD A+ RR RR +
Sbjct: 132 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 181
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 116/172 (67%), Gaps = 5/172 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 188
Query: 1006 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064
TEA + F +IS S + SKW GE EK VK +F LA + PS++F+DE+DS+ G R + E
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENE 247
Query: 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116
EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R +
Sbjct: 248 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYI 298
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 159 bits (403), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 115/172 (66%), Gaps = 5/172 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 66
Query: 1006 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064
TEA + F +IS S + SKW GE EK VK +F LA + PS++F+DE+DS+ G R E
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NE 125
Query: 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116
EA R++K EF+V G+ D + +LVL ATN P+ LD A+ RR +R +
Sbjct: 126 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 5/165 (3%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPG 1063
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R
Sbjct: 593 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILR 635
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112
E R++ ++ + DGL K + V+V+AATNRP +D A +RR R
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPA-LRRFGR 362
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 5/165 (3%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPG 1063
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R
Sbjct: 593 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILR 635
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112
E R++ ++ + DGL K + V+V+AATNRP +D A +RR R
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPA-LRRFGR 362
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 104/165 (63%), Gaps = 5/165 (3%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 70
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR--ENPG 1063
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
A ++ N+ + DG+ T K+ V ++ ATNRP +D A++R
Sbjct: 131 GGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILR 173
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase
Length = 285
Score = 134 bits (336), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V ++DIG LE ++E+V LPL+ PELF K + P KGILL+GPPGTGKT+LAKAVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP-KGILLYGPPGTGKTLLAKAVA 72
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 1062
TE A FI + S + K+ GEG VK +F LA + APS++F+DE+D++ +R +
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
G+ E R + + + DG + V ++ ATNRP LD A++R
Sbjct: 133 GDREVQRTLM-QLLAEMDGFDARGD--VKIIGATNRPDILDPAILR 175
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 109/176 (61%), Gaps = 9/176 (5%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
+TFD IG L L+E++ LPL+ PE+F + + KP KG+LL+GPPGTGKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-- 1063
GANFI S I K+ GE + ++ +F+ A + P ++F+DEVD++ GRR + G
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 1064 -EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116
+ E R + E + DG + ++++ ATNRP LD A++R RL R+ +
Sbjct: 297 ADREIQRTLM-ELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEI 349
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112
E R++ ++ + DGL K + V+V+AATNRP +D A +RR R
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPA-LRRFGR 362
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112
E R++ ++ + DGL K + V+V+AATNRP +D A +RR R
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPA-LRRFGR 362
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112
E R++ ++ + DGL K + V+V+AATNRP +D A +RR R
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPA-LRRFGR 362
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 104/163 (63%), Gaps = 4/163 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT+ DIGALE++++ L ++ P++ P+ F L P G+LL GPPG GKT+LAKAVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
E+G NFI++ + + + GE E+ V+ VF A AP V+F DEVD++ RR + E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-RET 124
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
A ++ N+ + DGL +++V ++AATNRP +D A++R
Sbjct: 125 GASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDPAILR 165
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of
Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 104/167 (62%), Gaps = 5/167 (2%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065
E GA F I+ I SK GE E ++ F A K AP+++F+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112
E R++ ++ + DGL K + V+V+AATNRP +D A +RR R
Sbjct: 319 EVERRIVSQLLTLMDGL--KQRAHVIVMAATNRPNSIDPA-LRRFGR 362
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 19/195 (9%)
Query: 935 LADVIPP------SDIG------VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK 982
L D++PP S +G VT+ D+G L+ K ++E V LPL + +L+ + +
Sbjct: 146 LVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-D 204
Query: 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 1042
P +G+LL+GPPGTGKTML KAVA A FI ++ S K+ GEG + V+ VF LA +
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264
Query: 1043 APSVVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100
APS++F+DEVDS+ +R G ++++ E + DG V V+ ATNR
Sbjct: 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--DQSTNVKVIMATNRAD 322
Query: 1101 DLDEAVVR--RLPRR 1113
LD A++R RL R+
Sbjct: 323 TLDPALLRPGRLDRK 337
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 9/172 (5%)
Query: 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006
++ DIG LE+ +KE V LPL PEL+ + + KP KG++L+G PGTGKT+LAKAVA
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 1007 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---G 1063
+ A F+ I S + K+ G+G + + +F +A + APS+VF+DE+D++ +R + G
Sbjct: 239 QTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG 298
Query: 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRR 1113
E E R M E + DG D+ V V+ ATN+ LD A++R R+ R+
Sbjct: 299 EREIQRTML-ELLNQLDGF--DDRGDVKVIMATNKIETLDPALIRPGRIDRK 347
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 9/172 (5%)
Query: 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006
T+ D+G L+ + L E ++LP++R + F + P KG L++GPPGTGKT+LA+A A
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAA 237
Query: 1007 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---ENPG 1063
+ A F+ ++ + + GEG K V+ F+LA + AP+++F+DE+D++ +R E G
Sbjct: 238 QTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG 297
Query: 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRR 1113
+ E R M E + DG + D RV VLAATNR LD A++R RL R+
Sbjct: 298 DREVQRTML-ELLNQLDGFSSDD--RVKVLAATNRVDVLDPALLRSGRLDRK 346
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 110/185 (59%), Gaps = 13/185 (7%)
Query: 934 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993
++ + +P S T+D +G L +KE++ LP++ PELF + +P KG++L+GPP
Sbjct: 137 MMVEKVPDS----TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPP 191
Query: 994 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053
GTGKT+LA+AVA FI +S + + K+ GEG + V+ +F +A + APS++F+DE+D
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 1054 SMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR-- 1108
S+ R G+ E R M E + DG T + + ++ ATNR LD A++R
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPG 308
Query: 1109 RLPRR 1113
R+ R+
Sbjct: 309 RIDRK 313
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 999
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTGKT+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTL 64
Query: 1000 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059
LA+AVA EA F +IS S + G G V+ +F+ A AP +VF+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 1060 ENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
G H+ + N+ +V DG + KE ++V+AATNRP LD A++R
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPALLR 173
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VT+ D+G ++ + L+E+V LPL PE F + P KGILL+GPPGTGKT+ A+AVA
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP-KGILLYGPPGTGKTLCARAVA 264
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 1062
A FI + S + K+ GEG + V+ +F +A ++F DE+D++ G R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
G++E R M E + DG + + V+ ATNRP LD A++R
Sbjct: 325 GDNEVQRTML-ELITQLDGFDPRGN--IKVMFATNRPNTLDPALLR 367
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 8/172 (4%)
Query: 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 999
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTG T+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATL 64
Query: 1000 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059
LA+AVA EA F +IS S + G G V+ +F+ A AP +VF+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 1060 ENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108
G H+ + N+ +V DG + KE ++V+AATNRP LD A++R
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDILDPALLR 173
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 107 bits (266), Expect = 5e-23, Method: Composition-based stats.
Identities = 70/178 (39%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 1003
I TF D+ + K+ + ELV L+ P F K P KG+L+ GPPGTGKT+LAKA
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKA 64
Query: 1004 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP- 1062
+A EA F IS S + G G V+ +F A K AP ++F+DE+D+ +GR+
Sbjct: 65 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAG 123
Query: 1063 --GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116
G H+ + N+ +V DG + E ++V+AATNRP LD A++R R R+ V
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVV 179
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
V F D+ E K+ + E+V L+ PE + P KG+LL GPPGTGKT+LAKAVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKAVA 65
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-- 1063
EA F ++ SS + G G V+ +F A K APS++F+DE+D++ R G
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 1064 -EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116
++ + N+ + DG +++ V+VLAATNRP LD A++R R R+ V
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLV 180
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 17/182 (9%)
Query: 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 1003
+GV+F D+ + K ++E V L+ PE F + P KG LL GPPG GKT+LAKA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 1004 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR---- 1059
VATEA F+ ++ + G G V+++F A AP +V++DE+D++ +R
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 1060 ---ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRT 1114
N E + + N+ +V DG+ T D V+VLA+TNR LD A++R RL R
Sbjct: 119 SGFSNTEEEQTL----NQLLVEMDGMGTTD--HVIVLASTNRADILDGALMRPGRLDRHV 172
Query: 1115 CV 1116
+
Sbjct: 173 FI 174
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 1062
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R+ +
Sbjct: 154 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 70
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 1062
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 129
Query: 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R+ +
Sbjct: 130 GGNDEREQTLNQLLVEMDGFE-KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 508
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 1062
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R+ +
Sbjct: 154 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAI 207
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh
(G399l)
Length = 499
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 10/176 (5%)
Query: 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 85
Query: 1006 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--- 1062
EA FI S S + G G V+ +F A + AP +VF+DE+D+ +GR+
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 144
Query: 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116
G ++ + N+ +V DG KD ++V+AATNRP LD A++R R R+ +
Sbjct: 145 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAI 198
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal Domain
Length = 543
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 973 ELFCKGQLTKPCKG--ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI--TSKWFGEG 1028
E +LTK KG + L GPPG GKT LAK++A G F+ IS+ + S+ G
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154
Query: 1029 EKYVKAV-------FSLASKIAPSVVFVDEVDSM 1055
YV A+ A K+ P V +DE+D M
Sbjct: 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKM 187
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1041
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 1042 IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDKE--RVLVLAATN 1097
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 1098 RP 1099
RP
Sbjct: 147 RP 148
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1041
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 1042 IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDKE--RVLVLAATN 1097
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 1098 RP 1099
RP
Sbjct: 147 RP 148
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1041
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 1042 IAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDKE--RVLVLAATN 1097
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 1098 RP 1099
RP
Sbjct: 147 RP 148
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 23/159 (14%)
Query: 979 QLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF--GEGEK 1030
QL +P K IL+ GP G GKT +A+ +A A A FI + + T + E +
Sbjct: 39 QLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDS 98
Query: 1031 YVKAVFSLASKIAPSV-----VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085
++ + A +V VF+DE+D + + E G + ++ + + +G
Sbjct: 99 IIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158
Query: 1086 DK------ERVLVLAA----TNRPFDLDEAVVRRLPRRT 1114
K + +L +A+ RP DL + RLP R
Sbjct: 159 TKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 197
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 1040
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 120
Query: 1041 KIAPSVVFVDEVDSML 1056
K S V VD+++ +L
Sbjct: 121 KSQLSCVVVDDIERLL 136
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 1040
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 121
Query: 1041 KIAPSVVFVDEVDSML 1056
K S V VD+++ +L
Sbjct: 122 KSQLSCVVVDDIERLL 137
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 1046
++L+GPPGTGKT LA+ +A A A+ IS + K E + + + + ++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TI 109
Query: 1047 VFVDEV 1052
+FVDEV
Sbjct: 110 LFVDEV 115
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 1040
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 1041 KIAPSVVFVDEVDSMLGRRENP 1062
K +V++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 1040
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 1041 KIAPSVVFVDEVDSMLGRRENP 1062
K +V++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 988 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 1035
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 1036 FS-LASKIAPSVVFVDEVDSMLG 1057
+ ++F+DE+ +++G
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVG 140
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 988 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 1035
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 1036 FS-LASKIAPSVVFVDEVDSMLG 1057
+ ++F+DE+ +++G
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVG 277
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANF 1012
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGS 89
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 1044
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 108
Query: 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079
+V V ++ R E E + + NW
Sbjct: 109 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 143
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
Length = 442
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 1044
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 107
Query: 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079
+V V ++ R E E + + NW
Sbjct: 108 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 142
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.6 bits (83), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 1044
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 114
Query: 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079
+V V ++ R E E + + NW
Sbjct: 115 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 149
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----KWFGEGEKYVKAVFSLAS-- 1040
ILL GP G+GKT++A+ +A I I++S TS + GE + + AS
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLD---IPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 1041 ---KIAPSVVFVDEVDSMLGRREN---------PGEHEAMRKMKNEFMVN 1078
K +VF+DE+D + EN G +A+ K+ +VN
Sbjct: 132 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain Of
Clpb
Length = 195
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 988 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 1035
+L G PG GKT + + +A G + + M ++ +K+ GE E+ +K V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 1036 FS-LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMK 1072
+ LA + ++F+DE+ +M+G + G +A +K
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK 144
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015
ILL G PG GKT L K +A+++G +IN+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 968 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015
PL PE ILL G PG GKT L K +A+++G +IN+
Sbjct: 2 PLGSPEFML-------LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 975 FCKGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021
+ + QL +P K IL+ GP G GKT +A+ +A A A FI + + T
Sbjct: 35 WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 87
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 975 FCKGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG 1028
+ + QL +P K IL GP G GKT +A+ +A A A FI + + T G
Sbjct: 35 WRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYV 92
Query: 1029 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAM 1068
K V ++ + A +V E+ R E+ E +
Sbjct: 93 GKEVDSIIRDLTDSAXKLVRQQEIAKNRARAEDVAEERIL 132
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023
+ +L+GPPG GKT A VA E G + + + S + SK
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain Of
Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 988 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 1035
+L G PG GKT + + +A + G +++ +SS+ +K+ G+ E+ +K++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 1036 FSLASKIAPSVV-FVDEVDSMLG 1057
VV F+DE+ +++G
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVG 129
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 987 ILLFGPPGTGKTMLAKAVATE-AGANFINISMSSITSKWFG--------EGEKYVKAVFS 1037
+L +GPPGTGKT A+A E G N+ N+ + S G + + +FS
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS 108
Query: 1038 LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073
K+ + +DE D+M +N R KN
Sbjct: 109 KGFKL----IILDEADAMTNAAQNALRRVIERYTKN 140
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1057 GRRENPGEHEAMRKMKNEFMVN 1078
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1057 GRRENPGEHEAMRKMKNEFMVN 1078
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 987 ILLFGPPGTGKTMLAKAVATEAGANFINI-SMSSITSKWF 1025
+ + GP GTGK+ +AK +A + GA++++ +M I + W
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGASYLDTGAMYRIVTLWV 46
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration
Motor
Length = 334
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1057 GRRENPGEHEAMRKMKNEFMVN 1078
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1057 GRRENPGEHEAMRKMKNEFMVN 1078
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1057 GRRENPGEHEAMRKMKNEFMVN 1078
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q
Mutant In Complex With Manganese
Length = 1155
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 33/146 (22%)
Query: 543 ESSRTEKASMFAKRAALLQHRK-PTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 601
ES KASM A + ++++ P SS + + V +A+ E S ++ F
Sbjct: 1012 ESDSLTKASMAAVESEIIKYVSLPDSSEQKKLA---KVPREAILNAESSYVLLRSQRFHL 1068
Query: 602 GDRVKFV---GNV---TSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEG 655
GDRV ++ G V + GT V T G + I V FD I G
Sbjct: 1069 GDRVMYIQDSGKVPLHSKGTVVGYTSIGKNVS----------------IQVLFDNEIIAG 1112
Query: 656 NNLGGFCEDDHGFFCTASSLRLDSSL 681
NN GG + G L LDSS
Sbjct: 1113 NNFGGRLQTRRG-------LGLDSSF 1131
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 982 KPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSKWFGEGEKYVKAVFSL 1038
+P + GP G GKT LA+A+A + I I MS K G + + V
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKV--- 575
Query: 1039 ASKIAPSVVFVDEVD 1053
+ SVV +D ++
Sbjct: 576 -RRKPYSVVLLDAIE 589
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 943 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 997 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056
+T LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 RTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 1057 GRRENPGEHEAMRKMKNEFMVN 1078
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 989 LFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPS--- 1045
++G G GK+ + V + G N I +S + S GE K ++ + A++I
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 100
Query: 1046 -VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078
+F++++D+ GR ++ +M N ++N
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 134
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 399 DISGGISKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPY 458
++SG KI R+ L+ D+ +V I ++++D+L +G+L +N S S
Sbjct: 139 EVSGTKVKI-RSTRKTTPGLRMLDKYSVCIGGG-ESYRDNLCDGVLIKDNHIASCGSITL 196
Query: 459 YLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEI 505
+ + KN + + Y+ ++C+N ++ L ILL + SEI
Sbjct: 197 AIQRLRKN--LKNEYIAIECDNISQVEESLSNNVDMILLDNMSISEI 241
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144 From
Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 974 LFCKGQLT-KPCKGILLFGPPGTGKTMLAKAVATEAGANF 1012
L+ + +T +P + +++ G G+GKT +A VA E G F
Sbjct: 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 987 ILLFGPPGTGKTMLAKAVA---------TEAGANFINISMSSITSKWFGEGEKYVKA-VF 1036
IL+ G PGT K+ + + ++ T G+ ++ + + K G GE Y++A
Sbjct: 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK--GTGEYYLEAGAL 387
Query: 1037 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096
LA + +DE+D M + HEAM + + G+ K R V+AA
Sbjct: 388 VLADG---GIAVIDEIDKMRD-EDRVAIHEAME--QQTVSIAKAGIVAKLNARAAVIAAG 441
Query: 1097 NRPF 1100
N F
Sbjct: 442 NPKF 445
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 985 KGILLFGPPGTGKTML 1000
+GI+L GPPG+GKTM+
Sbjct: 1049 RGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 985 KGILLFGPPGTGKTMLA-KAVATEAGANFINISMSSITS 1022
+GI+L GPPG+GKTM+ A+ + + + I+ S T+
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1306
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 987 ILLFGPPGTGKTMLAKAVATE----AGANFI--NISMSSITSK---WFGEGEKYVKAVFS 1037
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 166
Query: 1038 LASKIAPSVVFVDE 1051
+ + S V VD+
Sbjct: 167 AKAILGGSKVRVDQ 180
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 987 ILLFGPPGTGKTMLAKAVATE----AGANFI--NISMSSITSK---WFGEGEKYVKAVFS 1037
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 108 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 167
Query: 1038 LASKIAPSVVFVDE 1051
+ + S V VD+
Sbjct: 168 AKAILGGSKVRVDQ 181
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 985 KGILLFGPPGTGKTMLAKAVA 1005
+ +LL G PGTGK+ML +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 988 LLF-GPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 1041
LLF GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 1042 IAP------SVVFVDEVDSM 1055
AP ++F+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 988 LLF-GPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 1041
LLF GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 1042 IAP------SVVFVDEVDSM 1055
AP ++F+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|1U6I|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6I|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.2a
Resolution
pdb|1U6J|A Chain A, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|B Chain B, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|C Chain C, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|D Chain D, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|E Chain E, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|F Chain F, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|G Chain G, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|H Chain H, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|I Chain I, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|J Chain J, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|K Chain K, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|1U6J|L Chain L, The Structure Of Native Coenzyme F420-Dependent
Methylenetetrahydromethanopterin Dehydrogenase At 2.4a
Resolution
pdb|3IQE|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQE|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-Tetrahydromethanopterin And
Coenzyme F420
pdb|3IQF|A Chain A, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|B Chain B, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|C Chain C, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|D Chain D, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|E Chain E, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|F Chain F, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|G Chain G, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|H Chain H, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|I Chain I, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|J Chain J, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|K Chain K, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQF|L Chain L, Structure Of F420 Dependent
Methylene-Tetrahydromethanopterin Dehydrogenase In
Complex With Methenyl-Tetrahydromethanopterin
pdb|3IQZ|A Chain A, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|B Chain B, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|C Chain C, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|D Chain D, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|E Chain E, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
pdb|3IQZ|F Chain F, Structure Of F420 Dependent
Methylene-tetrahydromethanopterin Dehydrogenase In
Complex With Methylene-tetrahydromethanopterin
Length = 283
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 390 LAGSSSPDFDISGGISKILDEQREIRELLKDSDRPTVLI-SARRQAFKDSLQEGILG 445
+A PDF + GG + + RE+L DS+ P V+I A KD ++E LG
Sbjct: 59 IAEDFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLG 115
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus
In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 987 ILLF-GPPGTGKTMLAKAVATEAGANFINISMSSI 1020
IL+F GPPG GK AK +A E G F++IS I
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDI 34
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 978 GQLTKPCKGI--LLFGPPGTGKTMLAKAVATE 1007
G + +P KGI L+ G PGTGKT +A+ +A E
Sbjct: 3 GSMEQP-KGINILITGTPGTGKTSMAEMIAAE 33
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF-GPPGTGKTMLAKAVAT 1006
FD E++K L + +R E C +LF GP G GKT LA ++
Sbjct: 28 FDGYIGQESIKKNLNVFIAAAKKRNE----------CLDHILFSGPAGLGKTTLANIISY 77
Query: 1007 EAGANF 1012
E AN
Sbjct: 78 EXSANI 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,077,068
Number of Sequences: 62578
Number of extensions: 1290108
Number of successful extensions: 2453
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2298
Number of HSP's gapped (non-prelim): 112
length of query: 1116
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1007
effective length of database: 8,152,335
effective search space: 8209401345
effective search space used: 8209401345
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)