Query 001244
Match_columns 1116
No_of_seqs 502 out of 2336
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 19:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 9E-58 2E-62 524.9 28.9 441 446-1116 182-676 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-50 3.5E-55 472.2 23.3 319 690-1116 266-599 (693)
3 KOG0736 Peroxisome assembly fa 100.0 3.3E-45 7.2E-50 430.0 25.6 342 690-1116 479-840 (953)
4 TIGR01243 CDC48 AAA family ATP 100.0 4.4E-42 9.4E-47 425.3 28.3 429 449-1116 173-619 (733)
5 KOG0741 AAA+-type ATPase [Post 100.0 1.9E-42 4.2E-47 393.3 17.4 336 689-1116 304-669 (744)
6 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-41 3.2E-46 377.4 17.1 254 856-1116 4-258 (386)
7 KOG0735 AAA+-type ATPase [Post 100.0 1.7E-36 3.6E-41 354.0 27.8 337 689-1115 478-831 (952)
8 COG0464 SpoVK ATPases of the A 100.0 6.2E-36 1.3E-40 355.4 24.4 373 645-1116 20-407 (494)
9 COG1222 RPT1 ATP-dependent 26S 100.0 3.5E-34 7.6E-39 317.1 16.3 171 943-1116 145-319 (406)
10 KOG0738 AAA+-type ATPase [Post 100.0 6E-34 1.3E-38 316.4 14.5 179 935-1116 199-379 (491)
11 KOG0739 AAA+-type ATPase [Post 100.0 1.6E-33 3.5E-38 303.9 15.1 178 935-1116 119-296 (439)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 2.8E-30 6E-35 298.8 16.4 169 945-1116 186-358 (802)
13 KOG0734 AAA+-type ATPase conta 100.0 1.2E-29 2.6E-34 289.6 14.7 173 939-1116 294-468 (752)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 1.9E-27 4.1E-32 281.2 22.9 305 703-1116 80-389 (489)
15 KOG0727 26S proteasome regulat 100.0 4.9E-28 1.1E-32 256.8 13.9 172 942-1116 148-323 (408)
16 KOG0732 AAA+-type ATPase conta 99.9 8.4E-28 1.8E-32 295.6 9.4 344 630-1059 288-669 (1080)
17 KOG0728 26S proteasome regulat 99.9 1.5E-26 3.2E-31 245.4 14.1 168 945-1116 143-315 (404)
18 COG1223 Predicted ATPase (AAA+ 99.9 8E-27 1.7E-31 248.9 11.6 164 945-1115 117-280 (368)
19 KOG0740 AAA+-type ATPase [Post 99.9 6.3E-27 1.4E-31 268.8 11.3 170 944-1116 148-317 (428)
20 KOG0731 AAA+-type ATPase conta 99.9 1.9E-26 4.1E-31 277.9 15.6 172 941-1116 303-479 (774)
21 KOG0726 26S proteasome regulat 99.9 2.6E-26 5.6E-31 247.8 12.5 168 945-1116 181-353 (440)
22 KOG0729 26S proteasome regulat 99.9 8.6E-26 1.9E-30 241.2 15.4 170 943-1115 171-344 (435)
23 KOG0652 26S proteasome regulat 99.9 9E-26 2E-30 240.5 14.0 169 944-1116 166-339 (424)
24 COG1223 Predicted ATPase (AAA+ 99.9 2.8E-26 6E-31 244.8 8.3 201 475-906 139-354 (368)
25 COG1222 RPT1 ATP-dependent 26S 99.9 6E-25 1.3E-29 244.2 11.3 231 448-908 145-393 (406)
26 TIGR03689 pup_AAA proteasome A 99.9 1.7E-24 3.6E-29 256.3 15.5 171 943-1116 176-362 (512)
27 PTZ00454 26S protease regulato 99.9 2.6E-24 5.6E-29 249.5 16.8 171 943-1116 139-313 (398)
28 KOG0651 26S proteasome regulat 99.9 2.1E-24 4.5E-29 235.5 13.2 169 945-1116 128-300 (388)
29 COG0465 HflB ATP-dependent Zn 99.9 4.2E-24 9.1E-29 254.2 14.1 170 943-1116 144-317 (596)
30 PRK11034 clpA ATP-dependent Cl 99.9 4.1E-23 8.9E-28 255.0 23.4 334 688-1115 265-649 (758)
31 PRK03992 proteasome-activating 99.9 2.2E-23 4.7E-28 241.7 16.3 170 944-1116 126-299 (389)
32 PLN00020 ribulose bisphosphate 99.9 2E-23 4.3E-28 235.4 14.4 134 981-1115 145-296 (413)
33 TIGR02639 ClpA ATP-dependent C 99.9 1.1E-22 2.3E-27 252.7 22.0 333 689-1115 262-645 (731)
34 TIGR01241 FtsH_fam ATP-depende 99.9 9.1E-23 2E-27 243.3 15.3 172 941-1116 47-222 (495)
35 PTZ00361 26 proteosome regulat 99.9 8.2E-23 1.8E-27 238.9 13.8 169 945-1116 179-351 (438)
36 KOG0732 AAA+-type ATPase conta 99.9 6.6E-23 1.4E-27 252.8 13.5 170 943-1116 259-435 (1080)
37 KOG0737 AAA+-type ATPase [Post 99.9 3.8E-22 8.3E-27 223.1 11.7 230 434-882 72-314 (386)
38 KOG0738 AAA+-type ATPase [Post 99.9 5.8E-22 1.3E-26 221.4 12.9 249 447-916 205-471 (491)
39 KOG0730 AAA+-type ATPase [Post 99.9 1.3E-21 2.8E-26 230.6 13.6 166 945-1116 181-348 (693)
40 TIGR01242 26Sp45 26S proteasom 99.9 2.5E-21 5.4E-26 222.5 15.2 170 944-1116 117-290 (364)
41 CHL00176 ftsH cell division pr 99.8 4.8E-21 1E-25 233.2 15.1 170 943-1116 177-350 (638)
42 COG0542 clpA ATP-binding subun 99.8 4.5E-21 9.8E-26 233.3 13.9 333 691-1097 249-642 (786)
43 TIGR03345 VI_ClpV1 type VI sec 99.8 9.6E-20 2.1E-24 228.8 22.9 338 689-1098 267-718 (852)
44 TIGR01243 CDC48 AAA family ATP 99.8 2.4E-20 5.2E-25 232.1 16.5 168 945-1116 174-343 (733)
45 CHL00095 clpC Clp protease ATP 99.8 2.6E-19 5.6E-24 225.1 25.8 333 689-1098 259-661 (821)
46 CHL00206 ycf2 Ycf2; Provisiona 99.8 1.9E-20 4.1E-25 239.0 12.9 129 981-1116 1627-1801(2281)
47 KOG0734 AAA+-type ATPase conta 99.8 1.8E-20 4E-25 215.1 10.8 242 439-910 289-544 (752)
48 TIGR03346 chaperone_ClpB ATP-d 99.8 4.4E-19 9.5E-24 223.7 23.1 340 689-1098 253-717 (852)
49 PF00004 AAA: ATPase family as 99.8 1.5E-19 3.2E-24 175.3 13.0 128 987-1116 1-130 (132)
50 KOG0741 AAA+-type ATPase [Post 99.8 4.4E-20 9.5E-25 211.9 10.3 175 936-1116 209-398 (744)
51 PRK10733 hflB ATP-dependent me 99.8 1.9E-19 4.2E-24 220.7 15.2 171 942-1116 145-319 (644)
52 PRK10865 protein disaggregatio 99.8 5.5E-18 1.2E-22 213.5 24.7 134 948-1098 567-720 (857)
53 COG0464 SpoVK ATPases of the A 99.8 9.1E-19 2E-23 208.8 12.9 235 431-883 215-466 (494)
54 KOG0736 Peroxisome assembly fa 99.8 3.2E-18 7E-23 203.6 12.5 263 427-911 645-929 (953)
55 KOG0739 AAA+-type ATPase [Post 99.7 2.3E-18 4.9E-23 187.3 9.2 226 435-881 115-352 (439)
56 KOG0731 AAA+-type ATPase conta 99.7 4.1E-18 9E-23 206.4 11.1 237 446-910 303-556 (774)
57 CHL00195 ycf46 Ycf46; Provisio 99.7 6.7E-18 1.5E-22 200.4 11.2 221 442-881 216-446 (489)
58 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.6E-17 5.7E-22 210.8 12.0 148 688-908 1719-1878(2281)
59 KOG0744 AAA+-type ATPase [Post 99.7 2.2E-17 4.7E-22 181.7 7.0 177 938-1116 131-324 (423)
60 PTZ00454 26S protease regulato 99.7 7.7E-17 1.7E-21 187.5 11.4 234 446-907 137-386 (398)
61 KOG0726 26S proteasome regulat 99.7 2.4E-17 5.3E-22 178.8 6.0 209 452-881 183-408 (440)
62 COG0465 HflB ATP-dependent Zn 99.7 1.3E-16 2.8E-21 190.7 11.8 235 446-912 142-395 (596)
63 PRK03992 proteasome-activating 99.7 2.6E-16 5.7E-21 182.9 11.6 233 447-907 124-372 (389)
64 TIGR01241 FtsH_fam ATP-depende 99.6 3.2E-16 6.9E-21 187.4 9.5 236 444-908 45-296 (495)
65 CHL00181 cbbX CbbX; Provisiona 99.6 1.8E-15 3.9E-20 169.3 13.1 157 949-1116 23-193 (287)
66 KOG0743 AAA+-type ATPase [Post 99.6 1.6E-15 3.4E-20 174.4 12.2 163 945-1116 197-367 (457)
67 TIGR02881 spore_V_K stage V sp 99.6 2.6E-15 5.7E-20 165.4 13.6 157 948-1115 5-174 (261)
68 KOG0728 26S proteasome regulat 99.6 5.4E-16 1.2E-20 165.6 7.3 147 689-910 228-391 (404)
69 KOG0727 26S proteasome regulat 99.6 1.2E-15 2.5E-20 163.2 9.7 216 445-881 146-378 (408)
70 TIGR02880 cbbX_cfxQ probable R 99.6 3E-15 6.5E-20 167.3 13.3 156 950-1116 23-192 (284)
71 KOG0652 26S proteasome regulat 99.6 1.1E-15 2.4E-20 164.0 9.1 210 451-882 168-395 (424)
72 CHL00176 ftsH cell division pr 99.6 1.5E-15 3.3E-20 185.5 10.2 238 443-908 172-424 (638)
73 PTZ00361 26 proteosome regulat 99.6 1.5E-15 3.2E-20 178.3 9.0 230 450-907 179-424 (438)
74 KOG0740 AAA+-type ATPase [Post 99.6 3E-15 6.5E-20 173.0 10.6 213 450-881 149-373 (428)
75 KOG0729 26S proteasome regulat 99.6 2.4E-15 5.1E-20 161.8 6.4 126 689-881 258-400 (435)
76 KOG0735 AAA+-type ATPase [Post 99.6 6.9E-15 1.5E-19 174.2 10.8 222 440-883 653-889 (952)
77 PRK10733 hflB ATP-dependent me 99.5 2.9E-14 6.2E-19 175.4 11.2 145 689-907 232-392 (644)
78 TIGR03689 pup_AAA proteasome A 99.5 1.2E-13 2.7E-18 164.5 14.7 176 682-905 266-476 (512)
79 TIGR01242 26Sp45 26S proteasom 99.5 4.1E-14 8.9E-19 163.0 9.0 231 447-905 115-361 (364)
80 TIGR02639 ClpA ATP-dependent C 99.5 2.1E-13 4.6E-18 170.2 14.1 146 947-1116 180-342 (731)
81 KOG0742 AAA+-type ATPase [Post 99.5 2.1E-13 4.5E-18 153.8 12.5 158 948-1116 354-512 (630)
82 PLN00020 ribulose bisphosphate 99.5 8.5E-14 1.8E-18 158.1 9.3 71 452-532 113-186 (413)
83 PF05496 RuvB_N: Holliday junc 99.5 1.9E-13 4.1E-18 146.7 9.7 140 946-1114 21-174 (233)
84 TIGR00763 lon ATP-dependent pr 99.4 5E-13 1.1E-17 167.8 13.9 148 950-1115 321-488 (775)
85 COG2256 MGS1 ATPase related to 99.4 4.6E-13 1E-17 152.2 11.1 127 945-1111 20-156 (436)
86 PRK11034 clpA ATP-dependent Cl 99.4 2.2E-12 4.8E-17 160.5 13.0 146 947-1116 184-346 (758)
87 KOG0651 26S proteasome regulat 99.4 1.6E-12 3.5E-17 143.3 9.8 212 450-881 128-355 (388)
88 PRK10865 protein disaggregatio 99.3 4.3E-12 9.3E-17 160.6 13.4 142 947-1112 176-335 (857)
89 CHL00095 clpC Clp protease ATP 99.3 7.2E-12 1.6E-16 158.4 12.8 142 947-1112 177-335 (821)
90 TIGR03345 VI_ClpV1 type VI sec 99.3 1.1E-11 2.3E-16 156.8 14.1 145 947-1116 185-347 (852)
91 TIGR00390 hslU ATP-dependent p 99.3 1.3E-11 2.8E-16 143.1 11.1 90 950-1039 13-104 (441)
92 TIGR00635 ruvB Holliday juncti 99.3 2.9E-11 6.4E-16 135.4 13.5 147 947-1115 2-155 (305)
93 TIGR03346 chaperone_ClpB ATP-d 99.3 2.2E-11 4.7E-16 154.5 13.8 144 947-1115 171-332 (852)
94 PRK05201 hslU ATP-dependent pr 99.3 1E-11 2.2E-16 144.1 9.7 90 950-1039 16-107 (443)
95 COG2204 AtoC Response regulato 99.3 2.9E-12 6.3E-17 150.4 4.4 235 855-1114 50-300 (464)
96 PRK00080 ruvB Holliday junctio 99.2 4.7E-11 1E-15 135.9 13.9 148 946-1115 22-176 (328)
97 cd00009 AAA The AAA+ (ATPases 99.2 1.4E-10 3.1E-15 112.0 14.8 120 985-1116 20-149 (151)
98 KOG2004 Mitochondrial ATP-depe 99.2 5.5E-11 1.2E-15 142.1 13.7 151 949-1111 411-576 (906)
99 PRK05342 clpX ATP-dependent pr 99.2 4E-11 8.6E-16 140.5 12.5 154 947-1100 68-241 (412)
100 COG0466 Lon ATP-dependent Lon 99.2 5.6E-11 1.2E-15 142.8 13.0 152 949-1111 323-488 (782)
101 KOG1051 Chaperone HSP104 and r 99.2 4.9E-10 1.1E-14 139.5 21.6 127 950-1098 563-710 (898)
102 COG2255 RuvB Holliday junction 99.2 3E-11 6.6E-16 132.4 9.7 149 945-1115 22-177 (332)
103 PRK14956 DNA polymerase III su 99.2 1.9E-10 4.1E-15 136.1 14.2 132 945-1111 14-173 (484)
104 PRK12323 DNA polymerase III su 99.2 1.7E-10 3.7E-15 139.6 12.8 132 945-1111 12-176 (700)
105 PRK10787 DNA-binding ATP-depen 99.2 9.1E-10 2E-14 138.3 19.6 144 950-1111 323-486 (784)
106 KOG2028 ATPase related to the 99.1 2.3E-10 4.9E-15 128.3 11.8 128 945-1112 134-275 (554)
107 PRK07003 DNA polymerase III su 99.1 2.9E-10 6.4E-15 139.1 13.5 132 945-1111 12-171 (830)
108 PRK14962 DNA polymerase III su 99.1 3.9E-10 8.4E-15 134.4 14.1 132 945-1111 10-169 (472)
109 PF00498 FHA: FHA domain; Int 99.1 2E-10 4.4E-15 101.0 8.5 67 154-224 1-68 (68)
110 TIGR00382 clpX endopeptidase C 99.1 2.9E-10 6.3E-15 133.0 12.1 148 951-1098 79-247 (413)
111 KOG0615 Serine/threonine prote 99.1 7.5E-11 1.6E-15 134.2 6.5 112 132-244 44-166 (475)
112 PRK13342 recombination factor 99.1 5.1E-10 1.1E-14 131.5 13.7 127 946-1111 9-144 (413)
113 PHA02544 44 clamp loader, smal 99.1 8.7E-10 1.9E-14 124.2 14.7 137 945-1112 17-154 (316)
114 COG3829 RocR Transcriptional r 99.1 8.5E-11 1.8E-15 138.4 6.6 149 945-1115 241-406 (560)
115 PRK04195 replication factor C 99.1 8.9E-10 1.9E-14 131.9 14.2 136 945-1110 10-152 (482)
116 cd00060 FHA Forkhead associate 99.1 8.1E-10 1.7E-14 103.1 10.1 97 134-234 1-101 (102)
117 PRK07940 DNA polymerase III su 99.1 1.2E-09 2.7E-14 127.5 13.8 140 947-1111 3-169 (394)
118 smart00382 AAA ATPases associa 99.0 1.2E-09 2.7E-14 104.1 11.3 124 985-1116 3-144 (148)
119 PRK14960 DNA polymerase III su 99.0 1.3E-09 2.9E-14 132.3 14.0 132 945-1111 11-170 (702)
120 TIGR02902 spore_lonB ATP-depen 99.0 4.8E-10 1E-14 135.7 10.2 61 945-1019 61-131 (531)
121 PF07728 AAA_5: AAA domain (dy 99.0 1.5E-10 3.2E-15 115.1 4.8 112 986-1110 1-139 (139)
122 COG3604 FhlA Transcriptional r 99.0 2.1E-10 4.5E-15 133.6 6.0 149 945-1115 219-383 (550)
123 PRK14949 DNA polymerase III su 99.0 1.9E-09 4.1E-14 134.3 14.6 131 945-1110 12-170 (944)
124 PF07724 AAA_2: AAA domain (Cd 99.0 1.2E-09 2.6E-14 113.9 11.1 115 982-1099 1-130 (171)
125 PLN03025 replication factor C 99.0 2.3E-09 5E-14 121.8 14.1 131 945-1111 9-151 (319)
126 PRK07994 DNA polymerase III su 99.0 2.2E-09 4.7E-14 131.5 14.7 131 945-1110 12-170 (647)
127 PRK14958 DNA polymerase III su 99.0 1.8E-09 3.8E-14 130.0 13.6 131 945-1110 12-170 (509)
128 PF05673 DUF815: Protein of un 99.0 1.5E-09 3.2E-14 118.4 11.5 135 945-1109 23-161 (249)
129 PF00158 Sigma54_activat: Sigm 99.0 1.2E-10 2.5E-15 121.2 2.0 132 952-1112 2-156 (168)
130 PRK14961 DNA polymerase III su 99.0 4.1E-09 8.8E-14 122.0 14.7 132 945-1111 12-171 (363)
131 PRK08691 DNA polymerase III su 99.0 4.6E-09 1E-13 128.6 14.3 131 945-1110 12-170 (709)
132 TIGR02640 gas_vesic_GvpN gas v 99.0 2.4E-09 5.2E-14 118.6 10.9 114 985-1111 22-178 (262)
133 PRK11331 5-methylcytosine-spec 99.0 3.8E-09 8.2E-14 124.1 12.5 117 985-1112 195-352 (459)
134 PRK07764 DNA polymerase III su 99.0 4.8E-09 1E-13 132.0 14.4 136 945-1111 11-172 (824)
135 PRK06645 DNA polymerase III su 98.9 6E-09 1.3E-13 125.1 14.3 132 945-1111 17-180 (507)
136 PRK14964 DNA polymerase III su 98.9 5.2E-09 1.1E-13 124.9 13.6 132 945-1111 9-168 (491)
137 KOG0989 Replication factor C, 98.9 2.9E-09 6.3E-14 118.1 10.3 136 945-1110 32-180 (346)
138 KOG0742 AAA+-type ATPase [Post 98.9 2E-09 4.4E-14 122.2 9.1 140 689-873 430-586 (630)
139 PRK14952 DNA polymerase III su 98.9 8.3E-09 1.8E-13 125.7 14.9 131 945-1110 9-169 (584)
140 PRK05563 DNA polymerase III su 98.9 6.7E-09 1.5E-13 126.4 14.1 132 945-1111 12-171 (559)
141 PRK14963 DNA polymerase III su 98.9 7.2E-09 1.6E-13 124.6 13.8 132 945-1111 10-168 (504)
142 PRK14969 DNA polymerase III su 98.9 7.8E-09 1.7E-13 125.1 14.0 131 945-1110 12-170 (527)
143 PRK14951 DNA polymerase III su 98.9 1E-08 2.3E-13 125.3 14.6 131 945-1110 12-175 (618)
144 PRK14959 DNA polymerase III su 98.9 9.6E-09 2.1E-13 125.1 14.0 132 945-1111 12-171 (624)
145 PHA02244 ATPase-like protein 98.9 5E-09 1.1E-13 120.4 10.5 120 985-1111 120-254 (383)
146 PRK12402 replication factor C 98.9 1.2E-08 2.7E-13 115.3 13.6 137 945-1111 11-177 (337)
147 PRK14957 DNA polymerase III su 98.9 1.3E-08 2.8E-13 123.1 14.4 131 945-1110 12-170 (546)
148 PRK13407 bchI magnesium chelat 98.9 1.6E-09 3.5E-14 124.0 6.2 143 945-1116 4-199 (334)
149 CHL00081 chlI Mg-protoporyphyr 98.9 3.2E-09 6.8E-14 122.0 8.0 144 945-1116 13-215 (350)
150 TIGR02928 orc1/cdc6 family rep 98.9 2.6E-08 5.6E-13 114.4 15.4 143 949-1111 15-190 (365)
151 COG0714 MoxR-like ATPases [Gen 98.9 6.7E-09 1.5E-13 118.5 10.5 123 985-1116 44-186 (329)
152 TIGR02397 dnaX_nterm DNA polym 98.9 1.8E-08 3.9E-13 115.1 14.0 132 945-1111 10-169 (355)
153 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.7E-08 3.7E-13 108.0 12.7 87 945-1055 11-102 (226)
154 PRK14965 DNA polymerase III su 98.9 1.4E-08 3.1E-13 124.0 13.5 132 945-1111 12-171 (576)
155 PRK00149 dnaA chromosomal repl 98.9 7.2E-09 1.6E-13 123.2 10.6 115 985-1112 149-271 (450)
156 PRK05896 DNA polymerase III su 98.9 1.7E-08 3.8E-13 122.4 13.8 132 945-1111 12-171 (605)
157 PRK06305 DNA polymerase III su 98.9 2.2E-08 4.8E-13 119.1 14.4 132 945-1111 13-173 (451)
158 TIGR01650 PD_CobS cobaltochela 98.8 3.2E-09 7E-14 120.5 6.4 121 985-1115 65-216 (327)
159 PRK07133 DNA polymerase III su 98.8 2.7E-08 5.8E-13 122.9 14.2 138 945-1111 14-170 (725)
160 PRK14970 DNA polymerase III su 98.8 3.4E-08 7.4E-13 114.1 14.2 134 945-1111 13-160 (367)
161 PRK00411 cdc6 cell division co 98.8 5.7E-08 1.2E-12 112.8 16.0 144 947-1111 28-198 (394)
162 PRK13341 recombination factor 98.8 1.5E-08 3.2E-13 126.4 11.5 128 945-1111 24-161 (725)
163 PRK14948 DNA polymerase III su 98.8 3E-08 6.4E-13 122.0 14.0 132 945-1111 12-173 (620)
164 PF07726 AAA_3: ATPase family 98.8 1.2E-09 2.5E-14 108.6 1.1 114 986-1111 1-130 (131)
165 PRK06647 DNA polymerase III su 98.8 3.5E-08 7.7E-13 120.1 13.8 132 945-1111 12-171 (563)
166 PF01078 Mg_chelatase: Magnesi 98.8 5.2E-09 1.1E-13 111.9 5.7 45 948-1008 2-46 (206)
167 PRK08903 DnaA regulatory inact 98.8 6E-08 1.3E-12 104.6 13.7 84 945-1055 14-102 (227)
168 PRK12377 putative replication 98.8 3.8E-08 8.3E-13 108.5 12.4 156 929-1111 54-223 (248)
169 COG1219 ClpX ATP-dependent pro 98.8 8.7E-09 1.9E-13 114.6 7.2 160 951-1112 63-249 (408)
170 TIGR02442 Cob-chelat-sub cobal 98.8 7.1E-09 1.5E-13 128.0 7.1 141 947-1116 2-197 (633)
171 COG0542 clpA ATP-binding subun 98.8 3.8E-08 8.2E-13 121.7 13.3 143 947-1113 168-328 (786)
172 PRK09111 DNA polymerase III su 98.8 4.8E-08 1E-12 119.6 13.6 138 945-1111 20-184 (598)
173 PRK14955 DNA polymerase III su 98.8 5.6E-08 1.2E-12 114.0 13.4 131 945-1110 12-178 (397)
174 PRK14953 DNA polymerase III su 98.8 5.9E-08 1.3E-12 116.4 13.6 132 945-1111 12-171 (486)
175 TIGR02903 spore_lon_C ATP-depe 98.7 7.7E-08 1.7E-12 118.5 14.8 62 945-1020 150-221 (615)
176 PF00004 AAA: ATPase family as 98.7 5E-08 1.1E-12 94.6 10.5 58 689-749 45-114 (132)
177 TIGR00362 DnaA chromosomal rep 98.7 2E-08 4.3E-13 117.8 9.1 115 985-1112 137-259 (405)
178 PRK08116 hypothetical protein; 98.7 3.8E-08 8.3E-13 109.7 10.8 117 930-1054 66-189 (268)
179 KOG0745 Putative ATP-dependent 98.7 2E-08 4.3E-13 115.2 8.6 128 985-1112 227-378 (564)
180 PRK07952 DNA replication prote 98.7 8.4E-08 1.8E-12 105.6 13.1 158 929-1110 52-221 (244)
181 PRK08084 DNA replication initi 98.7 1.2E-07 2.6E-12 103.6 13.9 131 945-1111 18-157 (235)
182 PRK14088 dnaA chromosomal repl 98.7 2.9E-08 6.2E-13 117.8 9.2 115 985-1112 131-254 (440)
183 PRK06893 DNA replication initi 98.7 5.9E-08 1.3E-12 105.5 10.8 105 986-1111 41-151 (229)
184 TIGR02030 BchI-ChlI magnesium 98.7 6.1E-08 1.3E-12 111.3 11.3 141 947-1116 2-202 (337)
185 PTZ00112 origin recognition co 98.7 1.4E-07 3E-12 116.7 14.7 142 949-1112 755-928 (1164)
186 PRK14950 DNA polymerase III su 98.7 1.1E-07 2.3E-12 116.8 13.8 132 945-1111 12-172 (585)
187 PRK14086 dnaA chromosomal repl 98.7 4.6E-08 9.9E-13 118.9 10.2 116 985-1114 315-439 (617)
188 PRK00440 rfc replication facto 98.7 2E-07 4.4E-12 104.6 14.4 132 945-1112 13-155 (319)
189 PRK14954 DNA polymerase III su 98.7 1.6E-07 3.5E-12 115.3 14.7 131 945-1110 12-178 (620)
190 PRK15424 propionate catabolism 98.7 1.3E-08 2.7E-13 123.1 4.5 134 946-1099 216-373 (538)
191 PRK08451 DNA polymerase III su 98.7 1.9E-07 4.1E-12 112.7 14.1 132 945-1111 10-169 (535)
192 PRK11608 pspF phage shock prot 98.7 3.9E-08 8.6E-13 112.4 7.7 141 948-1115 5-175 (326)
193 TIGR02974 phageshock_pspF psp 98.6 3.8E-08 8.3E-13 112.7 6.9 112 985-1111 23-163 (329)
194 COG2812 DnaX DNA polymerase II 98.6 4.6E-08 9.9E-13 116.9 7.7 138 945-1111 12-171 (515)
195 KOG0744 AAA+-type ATPase [Post 98.6 4.6E-08 1E-12 109.1 7.1 75 442-521 130-204 (423)
196 PRK08727 hypothetical protein; 98.6 2.6E-07 5.6E-12 100.9 12.8 105 985-1112 42-153 (233)
197 COG2607 Predicted ATPase (AAA+ 98.6 3.2E-07 6.9E-12 99.3 12.8 135 945-1109 56-194 (287)
198 PRK12422 chromosomal replicati 98.6 8.2E-08 1.8E-12 114.1 9.2 115 985-1112 142-262 (445)
199 KOG0991 Replication factor C, 98.6 9.6E-08 2.1E-12 102.6 8.7 131 945-1108 23-162 (333)
200 PRK14971 DNA polymerase III su 98.6 4.7E-07 1E-11 111.5 15.4 132 945-1111 13-173 (614)
201 TIGR02329 propionate_PrpR prop 98.6 2.5E-08 5.5E-13 120.5 4.2 95 946-1055 209-319 (526)
202 PRK05642 DNA replication initi 98.6 2.6E-07 5.6E-12 101.0 11.6 105 985-1111 46-156 (234)
203 smart00350 MCM minichromosome 98.6 6E-08 1.3E-12 117.1 7.1 152 950-1115 204-382 (509)
204 COG1221 PspF Transcriptional r 98.6 5.6E-08 1.2E-12 113.0 6.4 141 946-1108 75-231 (403)
205 PRK13531 regulatory ATPase Rav 98.6 1.1E-07 2.4E-12 112.8 8.9 137 951-1116 22-177 (498)
206 PRK08181 transposase; Validate 98.6 3.1E-07 6.7E-12 102.5 11.2 113 985-1113 107-233 (269)
207 PF00308 Bac_DnaA: Bacterial d 98.6 4E-07 8.7E-12 98.6 11.7 115 985-1112 35-157 (219)
208 COG0470 HolB ATPase involved i 98.5 4.1E-07 8.9E-12 102.1 11.6 132 950-1111 2-161 (325)
209 PRK07471 DNA polymerase III su 98.5 6.4E-07 1.4E-11 104.1 13.3 138 945-1111 15-193 (365)
210 TIGR01817 nifA Nif-specific re 98.5 4.3E-08 9.2E-13 119.0 3.5 96 945-1055 192-302 (534)
211 PRK05564 DNA polymerase III su 98.5 8.6E-07 1.9E-11 100.6 13.5 132 947-1111 2-145 (313)
212 PRK11388 DNA-binding transcrip 98.5 4.4E-08 9.5E-13 121.3 3.2 95 946-1055 322-428 (638)
213 PRK05022 anaerobic nitric oxid 98.5 7.7E-08 1.7E-12 116.2 5.2 126 947-1099 185-332 (509)
214 PRK15429 formate hydrogenlyase 98.5 1.4E-07 3.1E-12 117.7 7.4 127 946-1099 373-521 (686)
215 TIGR00678 holB DNA polymerase 98.5 1.1E-06 2.5E-11 92.1 13.0 107 984-1111 14-148 (188)
216 TIGR03354 VI_FHA type VI secre 98.5 1.9E-07 4.2E-12 109.3 7.9 82 146-232 18-103 (396)
217 PRK06620 hypothetical protein; 98.5 8.1E-07 1.8E-11 96.0 11.6 92 985-1112 45-138 (214)
218 PRK09112 DNA polymerase III su 98.5 1.6E-06 3.5E-11 100.3 14.7 138 945-1111 19-193 (351)
219 PRK10820 DNA-binding transcrip 98.5 1.1E-07 2.3E-12 115.2 5.2 96 945-1055 200-310 (520)
220 TIGR00368 Mg chelatase-related 98.5 1.9E-07 4E-12 112.4 7.1 140 946-1116 189-388 (499)
221 PRK06835 DNA replication prote 98.5 4.5E-07 9.7E-12 104.0 9.6 113 985-1112 184-307 (329)
222 PRK14087 dnaA chromosomal repl 98.5 6E-07 1.3E-11 107.0 11.0 114 985-1113 142-267 (450)
223 KOG1969 DNA replication checkp 98.5 1E-06 2.2E-11 106.8 12.3 67 985-1053 327-397 (877)
224 PF01695 IstB_IS21: IstB-like 98.5 1.8E-07 3.9E-12 98.3 5.5 117 984-1116 47-177 (178)
225 PTZ00111 DNA replication licen 98.4 5E-07 1.1E-11 113.4 10.1 165 929-1115 439-639 (915)
226 COG1239 ChlI Mg-chelatase subu 98.4 7.3E-07 1.6E-11 103.4 10.3 149 946-1116 14-215 (423)
227 TIGR02031 BchD-ChlD magnesium 98.4 4.2E-07 9.1E-12 111.6 7.2 117 984-1115 16-156 (589)
228 COG1484 DnaC DNA replication p 98.4 1.4E-06 3.1E-11 96.5 10.7 114 984-1113 105-233 (254)
229 PRK06526 transposase; Provisio 98.4 3.7E-07 8.1E-12 101.1 5.8 113 985-1113 99-225 (254)
230 PF13177 DNA_pol3_delta2: DNA 98.4 3E-06 6.5E-11 87.7 12.1 127 953-1111 1-154 (162)
231 PRK08939 primosomal protein Dn 98.4 2E-06 4.3E-11 97.8 11.6 144 935-1099 113-261 (306)
232 TIGR02915 PEP_resp_reg putativ 98.3 3.2E-07 6.9E-12 108.4 4.8 125 948-1099 138-284 (445)
233 smart00763 AAA_PrkA PrkA AAA d 98.3 2.6E-06 5.6E-11 98.2 12.0 62 948-1017 49-118 (361)
234 PRK06921 hypothetical protein; 98.3 1.5E-06 3.3E-11 96.9 9.2 67 985-1054 118-188 (266)
235 PRK08058 DNA polymerase III su 98.3 3.6E-06 7.9E-11 96.5 12.4 131 947-1111 3-162 (329)
236 COG1474 CDC6 Cdc6-related prot 98.3 5.1E-06 1.1E-10 96.7 12.7 141 949-1112 17-182 (366)
237 PF14532 Sigma54_activ_2: Sigm 98.3 1.2E-06 2.6E-11 87.8 6.4 98 985-1111 22-129 (138)
238 PRK10923 glnG nitrogen regulat 98.3 1.6E-06 3.5E-11 103.3 8.5 136 948-1110 137-301 (469)
239 PRK05707 DNA polymerase III su 98.3 6E-06 1.3E-10 94.8 12.1 111 983-1112 21-159 (328)
240 PRK07399 DNA polymerase III su 98.2 4.7E-06 1E-10 95.1 11.1 135 947-1111 2-175 (314)
241 PRK09183 transposase/IS protei 98.2 2.3E-06 5E-11 95.1 8.0 70 985-1055 103-176 (259)
242 PRK11361 acetoacetate metaboli 98.2 5.9E-07 1.3E-11 106.3 2.9 100 985-1099 167-288 (457)
243 COG0593 DnaA ATPase involved i 98.2 6.5E-06 1.4E-10 96.4 11.1 117 984-1114 113-237 (408)
244 PRK09862 putative ATP-dependen 98.2 2.3E-06 4.9E-11 103.0 6.6 139 947-1116 189-385 (506)
245 TIGR02881 spore_V_K stage V sp 98.2 1.3E-05 2.9E-10 88.7 12.2 81 705-823 106-191 (261)
246 TIGR00764 lon_rel lon-related 98.1 6.3E-06 1.4E-10 101.7 9.6 50 946-1011 15-64 (608)
247 PF13401 AAA_22: AAA domain; P 98.1 1.1E-05 2.4E-10 78.7 8.8 97 985-1096 5-125 (131)
248 PRK09087 hypothetical protein; 98.1 1.4E-05 3E-10 87.2 10.4 95 986-1111 46-143 (226)
249 COG0606 Predicted ATPase with 98.1 1.4E-06 3E-11 102.4 2.4 48 945-1008 175-222 (490)
250 PRK15115 response regulator Gl 98.1 8E-06 1.7E-10 96.6 8.9 109 985-1110 158-289 (444)
251 TIGR00602 rad24 checkpoint pro 98.1 1.7E-05 3.7E-10 97.9 11.7 103 945-1056 80-208 (637)
252 KOG0990 Replication factor C, 98.1 5.1E-06 1.1E-10 93.3 6.3 139 941-1112 33-184 (360)
253 CHL00181 cbbX CbbX; Provisiona 98.1 1.3E-05 2.8E-10 90.5 9.6 84 704-825 122-211 (287)
254 smart00240 FHA Forkhead associ 98.1 6.6E-06 1.4E-10 68.4 5.5 50 154-207 1-52 (52)
255 PF13173 AAA_14: AAA domain 98.1 1.5E-05 3.2E-10 78.9 8.8 69 985-1055 3-73 (128)
256 PLN02927 antheraxanthin epoxid 98.0 8.3E-06 1.8E-10 101.1 8.3 84 143-231 545-642 (668)
257 cd01120 RecA-like_NTPases RecA 98.0 2.8E-05 6.1E-10 77.4 10.3 108 987-1100 2-138 (165)
258 TIGR01818 ntrC nitrogen regula 98.0 5.2E-06 1.1E-10 98.6 5.5 136 949-1111 134-298 (463)
259 PRK06871 DNA polymerase III su 98.0 7.8E-05 1.7E-09 85.6 13.7 108 984-1111 24-159 (325)
260 PRK06964 DNA polymerase III su 97.9 4.9E-05 1.1E-09 87.8 11.6 113 983-1111 20-184 (342)
261 TIGR00763 lon ATP-dependent pr 97.9 6.2E-05 1.3E-09 95.6 13.6 34 492-527 347-380 (775)
262 PRK07993 DNA polymerase III su 97.9 0.00011 2.3E-09 84.8 13.9 111 983-1112 23-161 (334)
263 PRK04132 replication factor C 97.9 3.6E-05 7.7E-10 97.4 10.7 106 983-1110 563-681 (846)
264 COG3283 TyrR Transcriptional r 97.9 1.2E-05 2.5E-10 91.3 4.9 134 946-1099 201-344 (511)
265 PRK10365 transcriptional regul 97.9 1.1E-05 2.3E-10 95.2 4.7 68 985-1055 163-245 (441)
266 COG1224 TIP49 DNA helicase TIP 97.8 4E-05 8.6E-10 87.2 8.2 81 949-1039 39-121 (450)
267 COG1716 FOG: FHA domain [Signa 97.8 7E-05 1.5E-09 78.5 9.7 75 147-228 84-159 (191)
268 TIGR02880 cbbX_cfxQ probable R 97.8 6.2E-05 1.3E-09 84.9 9.7 84 704-825 121-210 (284)
269 PRK08769 DNA polymerase III su 97.8 0.00017 3.8E-09 82.6 12.9 112 984-1111 26-165 (319)
270 PRK05342 clpX ATP-dependent pr 97.8 9.4E-05 2E-09 87.5 10.9 85 443-530 59-144 (412)
271 PF05621 TniB: Bacterial TniB 97.8 0.00022 4.7E-09 80.7 12.8 119 985-1112 62-207 (302)
272 PRK06090 DNA polymerase III su 97.8 0.00026 5.6E-09 81.2 13.7 110 983-1111 24-160 (319)
273 COG1220 HslU ATP-dependent pro 97.8 4.9E-05 1.1E-09 86.0 7.4 77 951-1027 17-94 (444)
274 PF06068 TIP49: TIP49 C-termin 97.8 7.9E-05 1.7E-09 85.9 9.0 82 948-1039 23-106 (398)
275 PRK13765 ATP-dependent proteas 97.7 3.9E-05 8.5E-10 94.9 6.9 49 945-1009 27-75 (637)
276 KOG0478 DNA replication licens 97.7 0.00019 4.1E-09 87.2 11.5 156 950-1115 430-608 (804)
277 PF01637 Arch_ATPase: Archaeal 97.7 9.3E-05 2E-09 78.3 7.6 24 985-1008 21-44 (234)
278 PRK13406 bchD magnesium chelat 97.7 2.3E-05 4.9E-10 96.2 3.3 117 985-1116 26-166 (584)
279 PRK08699 DNA polymerase III su 97.7 0.00022 4.7E-09 82.0 11.1 112 983-1111 20-165 (325)
280 COG1241 MCM2 Predicted ATPase 97.7 5E-05 1.1E-09 93.8 6.2 170 927-1115 273-465 (682)
281 TIGR00382 clpX endopeptidase C 97.6 0.00035 7.7E-09 82.6 11.6 84 444-530 66-152 (413)
282 COG3284 AcoR Transcriptional a 97.6 2.3E-05 5.1E-10 94.7 1.7 120 985-1115 337-472 (606)
283 PRK00080 ruvB Holliday junctio 97.6 0.0012 2.6E-08 75.7 15.5 59 452-524 23-81 (328)
284 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00053 1.1E-08 80.0 12.2 102 981-1099 59-168 (362)
285 TIGR02237 recomb_radB DNA repa 97.5 0.00035 7.6E-09 74.4 9.7 79 978-1057 7-111 (209)
286 PF03215 Rad17: Rad17 cell cyc 97.5 0.00047 1E-08 83.8 11.7 65 945-1018 15-79 (519)
287 PF00493 MCM: MCM2/3/5 family 97.5 5.2E-06 1.1E-10 95.4 -4.8 150 950-1115 25-203 (331)
288 PHA00729 NTP-binding motif con 97.5 0.00025 5.5E-09 77.4 8.1 70 985-1056 18-95 (226)
289 TIGR01618 phage_P_loop phage n 97.5 0.0001 2.2E-09 80.3 5.0 73 982-1056 10-94 (220)
290 KOG1881 Anion exchanger adapto 97.5 0.00037 8E-09 84.8 10.0 88 151-241 176-272 (793)
291 cd01124 KaiC KaiC is a circadi 97.5 0.00058 1.3E-08 70.8 10.3 71 987-1057 2-109 (187)
292 COG1219 ClpX ATP-dependent pro 97.5 7.9E-05 1.7E-09 83.8 3.8 68 461-530 66-133 (408)
293 KOG2170 ATPase of the AAA+ sup 97.4 0.00068 1.5E-08 76.2 9.7 133 951-1099 84-225 (344)
294 PF00910 RNA_helicase: RNA hel 97.4 0.00023 5E-09 68.6 5.3 23 987-1009 1-23 (107)
295 PRK05917 DNA polymerase III su 97.4 0.002 4.4E-08 72.9 13.4 113 983-1111 18-147 (290)
296 PF12774 AAA_6: Hydrolytic ATP 97.4 0.00087 1.9E-08 73.7 10.2 64 985-1055 33-96 (231)
297 PRK11823 DNA repair protein Ra 97.3 0.0014 3.1E-08 78.5 11.8 99 982-1080 78-195 (446)
298 TIGR03015 pepcterm_ATPase puta 97.3 0.0021 4.6E-08 70.7 12.3 25 985-1009 44-68 (269)
299 PF05673 DUF815: Protein of un 97.3 0.0032 6.8E-08 69.6 13.3 105 690-818 94-202 (249)
300 cd01121 Sms Sms (bacterial rad 97.3 0.0015 3.3E-08 76.5 11.4 99 982-1080 80-197 (372)
301 TIGR02928 orc1/cdc6 family rep 97.3 0.0065 1.4E-07 70.1 16.3 28 490-519 38-65 (365)
302 KOG1514 Origin recognition com 97.2 0.0014 3E-08 80.4 10.6 129 951-1101 398-553 (767)
303 COG1618 Predicted nucleotide k 97.2 0.0037 8E-08 65.0 12.1 25 984-1008 5-29 (179)
304 PF12775 AAA_7: P-loop contain 97.2 0.00066 1.4E-08 76.2 7.4 116 985-1110 34-172 (272)
305 PF05729 NACHT: NACHT domain 97.2 0.0024 5.1E-08 64.2 10.6 72 986-1057 2-95 (166)
306 PF13207 AAA_17: AAA domain; P 97.2 0.00033 7.2E-09 67.7 4.0 31 987-1017 2-32 (121)
307 KOG0477 DNA replication licens 97.2 0.00024 5.2E-09 85.3 3.4 171 927-1115 436-628 (854)
308 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0024 5.3E-08 76.5 11.5 65 945-1016 78-142 (634)
309 PRK09361 radB DNA repair and r 97.1 0.0018 3.8E-08 70.0 9.6 75 982-1057 21-121 (225)
310 KOG0482 DNA replication licens 97.1 0.00021 4.4E-09 84.2 2.4 170 925-1115 327-521 (721)
311 COG3456 Predicted component of 97.1 0.00051 1.1E-08 79.7 5.6 76 149-234 23-101 (430)
312 PRK00411 cdc6 cell division co 97.1 0.0044 9.5E-08 72.3 13.4 153 689-907 125-282 (394)
313 TIGR02688 conserved hypothetic 97.1 0.00054 1.2E-08 80.8 5.5 60 985-1056 210-273 (449)
314 PF05707 Zot: Zonular occluden 97.1 0.0006 1.3E-08 72.4 5.5 118 987-1114 3-141 (193)
315 PRK08533 flagellar accessory p 97.1 0.0041 8.9E-08 68.2 12.0 74 983-1056 23-130 (230)
316 PRK14962 DNA polymerase III su 97.1 0.0045 9.7E-08 74.8 13.4 73 704-823 117-189 (472)
317 KOG0479 DNA replication licens 97.1 0.00097 2.1E-08 79.8 7.4 154 950-1115 302-480 (818)
318 KOG1051 Chaperone HSP104 and r 97.1 0.0035 7.5E-08 79.7 12.6 120 985-1114 209-346 (898)
319 PRK08118 topology modulation p 97.1 0.0012 2.6E-08 68.8 7.3 33 985-1017 2-34 (167)
320 PRK00771 signal recognition pa 97.1 0.0072 1.6E-07 72.3 14.7 71 983-1055 94-187 (437)
321 PRK00149 dnaA chromosomal repl 97.1 0.0014 3E-08 78.5 8.8 78 704-824 211-294 (450)
322 KOG2035 Replication factor C, 97.1 0.0046 1E-07 69.0 11.9 135 946-1110 10-178 (351)
323 TIGR02012 tigrfam_recA protein 97.1 0.0026 5.6E-08 73.1 10.3 77 982-1058 53-148 (321)
324 PF06309 Torsin: Torsin; Inte 97.0 0.0024 5.2E-08 64.0 8.6 59 950-1015 26-89 (127)
325 PRK07261 topology modulation p 97.0 0.0014 3E-08 68.5 7.3 35 986-1020 2-36 (171)
326 cd00983 recA RecA is a bacter 97.0 0.0038 8.2E-08 71.9 10.9 77 982-1058 53-148 (325)
327 KOG0481 DNA replication licens 97.0 0.0008 1.7E-08 79.5 5.5 159 950-1116 332-511 (729)
328 PRK05818 DNA polymerase III su 97.0 0.004 8.7E-08 69.5 10.6 114 982-1111 5-140 (261)
329 PHA02624 large T antigen; Prov 97.0 0.0036 7.8E-08 76.6 10.9 117 984-1115 431-558 (647)
330 PF03266 NTPase_1: NTPase; In 97.0 0.0013 2.7E-08 69.0 6.1 23 986-1008 1-23 (168)
331 TIGR00635 ruvB Holliday juncti 96.9 0.0078 1.7E-07 67.9 12.7 33 491-525 29-61 (305)
332 PRK00131 aroK shikimate kinase 96.9 0.00086 1.9E-08 68.5 4.5 33 984-1016 4-36 (175)
333 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0094 2E-07 66.8 13.0 93 946-1053 57-159 (264)
334 PRK12723 flagellar biosynthesi 96.9 0.0018 3.9E-08 76.2 7.5 113 984-1110 174-309 (388)
335 COG3854 SpoIIIAA ncharacterize 96.9 0.0052 1.1E-07 67.1 10.1 71 985-1055 138-230 (308)
336 KOG2227 Pre-initiation complex 96.9 0.0041 8.8E-08 73.6 9.8 137 949-1108 150-308 (529)
337 KOG1942 DNA helicase, TBP-inte 96.9 0.0014 3E-08 73.3 5.6 71 949-1028 38-110 (456)
338 PRK15455 PrkA family serine pr 96.9 0.0015 3.2E-08 79.5 6.4 63 947-1017 74-137 (644)
339 KOG2228 Origin recognition com 96.9 0.0042 9E-08 71.0 9.4 144 950-1115 25-201 (408)
340 PRK14722 flhF flagellar biosyn 96.8 0.0052 1.1E-07 72.0 10.3 109 985-1107 138-267 (374)
341 PF13604 AAA_30: AAA domain; P 96.8 0.0023 4.9E-08 68.4 6.8 98 985-1098 19-132 (196)
342 cd01394 radB RadB. The archaea 96.8 0.0072 1.6E-07 64.9 10.5 73 983-1056 18-116 (218)
343 PF00931 NB-ARC: NB-ARC domain 96.8 0.0075 1.6E-07 66.9 10.9 25 983-1007 18-42 (287)
344 PRK13342 recombination factor 96.8 0.011 2.3E-07 70.3 12.7 32 493-526 37-68 (413)
345 KOG0745 Putative ATP-dependent 96.8 0.0018 3.9E-08 75.6 5.9 36 493-530 227-262 (564)
346 COG4650 RtcR Sigma54-dependent 96.8 0.0023 5E-08 71.4 6.5 68 985-1056 209-295 (531)
347 KOG0480 DNA replication licens 96.8 0.0015 3.3E-08 79.1 5.4 170 925-1114 330-523 (764)
348 PRK04296 thymidine kinase; Pro 96.8 0.015 3.3E-07 61.7 12.5 69 986-1055 4-90 (190)
349 PRK14086 dnaA chromosomal repl 96.8 0.0063 1.4E-07 75.1 10.7 78 704-824 377-460 (617)
350 PRK13407 bchI magnesium chelat 96.8 0.026 5.7E-07 65.4 15.2 25 493-519 30-54 (334)
351 PRK14974 cell division protein 96.7 0.0093 2E-07 69.1 11.4 72 984-1055 140-234 (336)
352 PF13191 AAA_16: AAA ATPase do 96.7 0.0039 8.4E-08 64.1 7.4 59 951-1020 2-63 (185)
353 cd01131 PilT Pilus retraction 96.7 0.0032 7E-08 67.3 6.9 68 986-1053 3-84 (198)
354 PRK07276 DNA polymerase III su 96.7 0.015 3.3E-07 66.0 12.6 111 983-1111 23-156 (290)
355 cd03283 ABC_MutS-like MutS-lik 96.7 0.011 2.3E-07 63.6 10.8 69 985-1053 26-115 (199)
356 TIGR00390 hslU ATP-dependent p 96.7 0.0017 3.6E-08 76.8 4.7 70 459-531 15-84 (441)
357 PRK06067 flagellar accessory p 96.7 0.017 3.8E-07 62.8 12.3 75 982-1056 23-133 (234)
358 PRK05800 cobU adenosylcobinami 96.7 0.0096 2.1E-07 62.5 9.9 92 986-1081 3-114 (170)
359 PRK13695 putative NTPase; Prov 96.7 0.018 3.9E-07 59.9 11.9 23 986-1008 2-24 (174)
360 PRK10536 hypothetical protein; 96.6 0.009 1.9E-07 66.7 10.0 22 986-1007 76-97 (262)
361 PF13671 AAA_33: AAA domain; P 96.6 0.0035 7.5E-08 62.2 6.2 28 987-1014 2-29 (143)
362 PRK11331 5-methylcytosine-spec 96.6 0.01 2.2E-07 70.9 11.0 26 492-519 194-219 (459)
363 PRK03839 putative kinase; Prov 96.6 0.0017 3.8E-08 67.6 4.2 31 986-1016 2-32 (180)
364 PRK13947 shikimate kinase; Pro 96.6 0.0019 4.1E-08 66.5 4.3 31 986-1016 3-33 (171)
365 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.018 3.8E-07 63.3 11.8 40 978-1018 16-58 (237)
366 TIGR02858 spore_III_AA stage I 96.6 0.005 1.1E-07 69.3 7.6 69 985-1053 112-204 (270)
367 cd00046 DEXDc DEAD-like helica 96.6 0.0068 1.5E-07 57.8 7.5 23 986-1008 2-24 (144)
368 TIGR00416 sms DNA repair prote 96.6 0.014 3E-07 70.3 11.7 98 981-1078 91-207 (454)
369 TIGR00362 DnaA chromosomal rep 96.6 0.0078 1.7E-07 71.1 9.5 24 493-518 137-160 (405)
370 cd01122 GP4d_helicase GP4d_hel 96.5 0.011 2.5E-07 65.4 9.9 36 982-1017 28-67 (271)
371 cd00464 SK Shikimate kinase (S 96.5 0.0022 4.9E-08 64.4 4.0 31 986-1016 1-31 (154)
372 cd01128 rho_factor Transcripti 96.5 0.018 3.9E-07 64.1 11.3 26 985-1010 17-42 (249)
373 PRK12726 flagellar biosynthesi 96.5 0.016 3.4E-07 68.1 11.3 99 953-1055 179-297 (407)
374 PRK07132 DNA polymerase III su 96.5 0.025 5.5E-07 64.6 12.6 107 984-1111 18-142 (299)
375 PRK10787 DNA-binding ATP-depen 96.5 0.025 5.4E-07 72.3 13.9 34 491-526 348-381 (784)
376 PRK00625 shikimate kinase; Pro 96.5 0.0025 5.3E-08 67.1 4.2 31 986-1016 2-32 (173)
377 PRK09376 rho transcription ter 96.5 0.0055 1.2E-07 72.0 7.2 72 985-1056 170-269 (416)
378 PHA02544 44 clamp loader, smal 96.5 0.022 4.7E-07 64.7 11.9 41 704-746 100-140 (316)
379 PRK07764 DNA polymerase III su 96.5 0.038 8.2E-07 71.0 15.2 42 703-747 119-160 (824)
380 cd01393 recA_like RecA is a b 96.4 0.016 3.6E-07 62.3 10.3 38 982-1019 17-63 (226)
381 PRK11889 flhF flagellar biosyn 96.4 0.022 4.9E-07 67.1 12.0 114 985-1111 242-375 (436)
382 KOG3347 Predicted nucleotide k 96.4 0.0023 4.9E-08 65.7 3.4 32 985-1016 8-39 (176)
383 PRK14532 adenylate kinase; Pro 96.4 0.003 6.6E-08 66.2 4.3 30 986-1015 2-31 (188)
384 PF00437 T2SE: Type II/IV secr 96.4 0.0057 1.2E-07 68.0 6.4 97 945-1053 100-207 (270)
385 COG2256 MGS1 ATPase related to 96.4 0.012 2.5E-07 68.9 8.9 33 493-527 49-81 (436)
386 PRK06217 hypothetical protein; 96.4 0.0036 7.8E-08 65.8 4.5 32 985-1016 2-33 (183)
387 PRK09354 recA recombinase A; P 96.3 0.022 4.8E-07 66.2 11.2 75 983-1057 59-152 (349)
388 cd00544 CobU Adenosylcobinamid 96.3 0.019 4.1E-07 60.3 9.7 70 987-1058 2-88 (169)
389 COG5271 MDN1 AAA ATPase contai 96.3 0.012 2.5E-07 77.1 9.2 117 985-1114 1544-1686(4600)
390 PRK04195 replication factor C 96.3 0.043 9.4E-07 66.5 14.0 36 492-529 39-74 (482)
391 PRK10436 hypothetical protein; 96.3 0.037 8E-07 66.8 13.1 94 945-1053 194-297 (462)
392 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0037 8E-08 65.0 4.1 29 987-1015 2-30 (183)
393 PRK14088 dnaA chromosomal repl 96.3 0.0099 2.2E-07 71.2 8.2 77 704-822 194-275 (440)
394 PRK06645 DNA polymerase III su 96.3 0.033 7.1E-07 67.9 12.6 40 704-746 128-167 (507)
395 PRK13949 shikimate kinase; Pro 96.3 0.0036 7.8E-08 65.4 3.9 32 985-1016 2-33 (169)
396 cd00984 DnaB_C DnaB helicase C 96.3 0.037 8E-07 60.2 11.9 37 982-1018 11-51 (242)
397 TIGR02525 plasmid_TraJ plasmid 96.3 0.03 6.6E-07 65.8 11.8 68 986-1053 151-235 (372)
398 COG1485 Predicted ATPase [Gene 96.2 0.036 7.9E-07 64.0 12.0 99 981-1099 62-171 (367)
399 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.02 4.3E-07 62.0 9.5 38 982-1019 17-63 (235)
400 PF00448 SRP54: SRP54-type pro 96.2 0.016 3.5E-07 62.2 8.6 107 985-1103 2-131 (196)
401 PRK06762 hypothetical protein; 96.2 0.012 2.6E-07 60.4 7.3 37 985-1021 3-39 (166)
402 cd01428 ADK Adenylate kinase ( 96.2 0.0042 9.1E-08 64.9 4.0 29 987-1015 2-30 (194)
403 TIGR01425 SRP54_euk signal rec 96.2 0.075 1.6E-06 63.5 14.7 73 983-1055 99-194 (429)
404 COG4619 ABC-type uncharacteriz 96.2 0.035 7.6E-07 58.4 10.4 26 983-1008 28-53 (223)
405 PRK07003 DNA polymerase III su 96.2 0.048 1E-06 68.8 13.5 41 704-747 119-159 (830)
406 PRK10416 signal recognition pa 96.2 0.026 5.6E-07 65.0 10.6 116 983-1105 113-252 (318)
407 PF06745 KaiC: KaiC; InterPro 96.2 0.029 6.3E-07 60.7 10.5 98 978-1080 14-148 (226)
408 cd02020 CMPK Cytidine monophos 96.2 0.0045 9.8E-08 61.5 3.9 30 987-1016 2-31 (147)
409 cd03280 ABC_MutS2 MutS2 homolo 96.2 0.042 9.2E-07 58.6 11.5 22 985-1006 29-50 (200)
410 TIGR02538 type_IV_pilB type IV 96.2 0.039 8.5E-07 68.2 12.7 94 945-1053 292-395 (564)
411 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.044 9.6E-07 61.1 12.1 36 982-1017 34-72 (259)
412 TIGR02533 type_II_gspE general 96.1 0.018 3.9E-07 69.9 9.5 94 945-1053 218-321 (486)
413 TIGR01420 pilT_fam pilus retra 96.1 0.01 2.2E-07 68.8 7.1 69 985-1053 123-205 (343)
414 PRK14531 adenylate kinase; Pro 96.1 0.0054 1.2E-07 64.5 4.4 31 985-1015 3-33 (183)
415 PF13479 AAA_24: AAA domain 96.1 0.021 4.6E-07 61.7 8.8 69 985-1056 4-81 (213)
416 PLN03210 Resistant to P. syrin 96.1 0.027 5.8E-07 75.1 11.6 52 947-1010 182-233 (1153)
417 PRK13948 shikimate kinase; Pro 96.1 0.0063 1.4E-07 64.6 4.6 36 981-1016 7-42 (182)
418 cd02021 GntK Gluconate kinase 96.1 0.0055 1.2E-07 61.7 4.0 29 987-1015 2-30 (150)
419 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.063 1.4E-06 58.3 12.2 22 985-1006 30-51 (213)
420 PRK05973 replicative DNA helic 96.0 0.054 1.2E-06 60.0 11.7 38 981-1018 61-101 (237)
421 cd03243 ABC_MutS_homologs The 96.0 0.042 9.1E-07 58.7 10.6 22 985-1006 30-51 (202)
422 PRK14530 adenylate kinase; Pro 96.0 0.0065 1.4E-07 65.5 4.4 30 986-1015 5-34 (215)
423 COG0563 Adk Adenylate kinase a 96.0 0.0066 1.4E-07 64.2 4.3 32 986-1019 2-33 (178)
424 COG2804 PulE Type II secretory 96.0 0.05 1.1E-06 65.5 12.0 95 944-1053 233-337 (500)
425 TIGR00064 ftsY signal recognit 96.0 0.047 1E-06 61.5 11.3 73 983-1055 71-166 (272)
426 TIGR02782 TrbB_P P-type conjug 95.9 0.025 5.3E-07 64.6 8.9 69 985-1053 133-214 (299)
427 TIGR01313 therm_gnt_kin carboh 95.9 0.006 1.3E-07 62.4 3.6 30 987-1016 1-30 (163)
428 TIGR03880 KaiC_arch_3 KaiC dom 95.9 0.069 1.5E-06 57.8 11.9 37 982-1018 14-53 (224)
429 PRK03731 aroL shikimate kinase 95.9 0.0077 1.7E-07 62.1 4.3 32 985-1016 3-34 (171)
430 PRK12323 DNA polymerase III su 95.9 0.055 1.2E-06 67.4 12.2 42 703-747 123-164 (700)
431 PLN03025 replication factor C 95.9 0.044 9.6E-07 62.8 10.8 24 493-518 35-58 (319)
432 PRK13531 regulatory ATPase Rav 95.9 0.16 3.4E-06 61.6 15.6 58 429-520 8-65 (498)
433 PRK12724 flagellar biosynthesi 95.9 0.036 7.9E-07 65.9 10.2 112 985-1106 224-353 (432)
434 PTZ00088 adenylate kinase 1; P 95.9 0.0077 1.7E-07 66.2 4.4 32 985-1016 7-38 (229)
435 PRK05201 hslU ATP-dependent pr 95.9 0.011 2.4E-07 70.0 6.0 68 462-532 21-88 (443)
436 PRK14959 DNA polymerase III su 95.9 0.083 1.8E-06 65.7 13.5 41 703-746 118-158 (624)
437 PRK14528 adenylate kinase; Pro 95.9 0.0084 1.8E-07 63.5 4.3 31 985-1015 2-32 (186)
438 PRK13764 ATPase; Provisional 95.8 0.016 3.4E-07 71.7 7.3 68 985-1053 258-334 (602)
439 COG1373 Predicted ATPase (AAA+ 95.8 0.032 7E-07 66.1 9.6 68 986-1055 39-106 (398)
440 PHA02774 E1; Provisional 95.8 0.025 5.3E-07 69.3 8.7 33 985-1017 435-468 (613)
441 smart00534 MUTSac ATPase domai 95.8 0.094 2E-06 55.4 12.1 20 987-1006 2-21 (185)
442 PRK14956 DNA polymerase III su 95.8 0.077 1.7E-06 64.2 12.7 42 703-747 120-161 (484)
443 cd00227 CPT Chloramphenicol (C 95.8 0.0075 1.6E-07 62.8 3.8 34 985-1018 3-36 (175)
444 COG0703 AroK Shikimate kinase 95.8 0.007 1.5E-07 63.7 3.5 32 985-1016 3-34 (172)
445 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.092 2E-06 56.9 12.3 36 982-1017 18-56 (229)
446 PRK04328 hypothetical protein; 95.8 0.084 1.8E-06 58.6 12.1 39 978-1017 18-59 (249)
447 TIGR03574 selen_PSTK L-seryl-t 95.8 0.038 8.2E-07 60.9 9.3 34 987-1020 2-38 (249)
448 PRK02496 adk adenylate kinase; 95.8 0.0091 2E-07 62.5 4.2 31 985-1015 2-32 (184)
449 PRK14961 DNA polymerase III su 95.8 0.12 2.5E-06 60.6 13.8 39 704-745 119-157 (363)
450 TIGR02397 dnaX_nterm DNA polym 95.8 0.22 4.8E-06 57.2 15.8 52 452-521 12-63 (355)
451 PRK13900 type IV secretion sys 95.7 0.027 5.9E-07 65.2 8.2 69 985-1053 161-245 (332)
452 PRK12422 chromosomal replicati 95.7 0.054 1.2E-06 65.2 10.9 77 704-823 202-284 (445)
453 KOG1968 Replication factor C, 95.7 0.0085 1.8E-07 76.7 4.4 100 987-1101 360-471 (871)
454 PRK14948 DNA polymerase III su 95.7 0.17 3.7E-06 63.3 15.5 55 689-746 105-160 (620)
455 PRK13946 shikimate kinase; Pro 95.7 0.009 1.9E-07 63.0 3.8 33 985-1017 11-43 (184)
456 PF09848 DUF2075: Uncharacteri 95.7 0.026 5.6E-07 65.6 7.9 23 986-1008 3-25 (352)
457 PRK05057 aroK shikimate kinase 95.7 0.011 2.3E-07 62.0 4.3 33 985-1017 5-37 (172)
458 COG4088 Predicted nucleotide k 95.7 0.054 1.2E-06 58.6 9.5 23 986-1008 3-25 (261)
459 PRK06547 hypothetical protein; 95.7 0.012 2.5E-07 62.0 4.5 34 983-1016 14-47 (172)
460 PRK09519 recA DNA recombinatio 95.7 0.067 1.4E-06 68.0 11.9 76 982-1057 58-152 (790)
461 PRK08154 anaerobic benzoate ca 95.7 0.015 3.2E-07 66.5 5.6 36 981-1016 130-165 (309)
462 cd01130 VirB11-like_ATPase Typ 95.6 0.024 5.3E-07 59.8 6.8 69 985-1053 26-110 (186)
463 TIGR01360 aden_kin_iso1 adenyl 95.6 0.012 2.6E-07 61.1 4.5 31 985-1015 4-34 (188)
464 smart00487 DEXDc DEAD-like hel 95.6 0.06 1.3E-06 54.6 9.5 24 985-1008 25-49 (201)
465 PRK14963 DNA polymerase III su 95.6 0.15 3.3E-06 62.3 14.4 54 690-746 101-155 (504)
466 KOG2383 Predicted ATPase [Gene 95.6 0.075 1.6E-06 62.2 11.0 28 981-1008 111-138 (467)
467 PRK05563 DNA polymerase III su 95.6 0.08 1.7E-06 65.5 12.0 56 689-747 103-159 (559)
468 PRK14960 DNA polymerase III su 95.6 0.12 2.6E-06 64.6 13.3 40 704-746 118-157 (702)
469 PRK00279 adk adenylate kinase; 95.6 0.012 2.6E-07 63.4 4.3 30 986-1015 2-31 (215)
470 cd03227 ABC_Class2 ABC-type Cl 95.6 0.18 3.9E-06 52.1 12.7 24 985-1008 22-45 (162)
471 PRK04301 radA DNA repair and r 95.5 0.067 1.5E-06 61.3 10.4 37 983-1019 101-146 (317)
472 TIGR01448 recD_rel helicase, p 95.5 0.033 7.1E-07 70.8 8.5 99 986-1101 340-457 (720)
473 cd02027 APSK Adenosine 5'-phos 95.5 0.03 6.4E-07 57.3 6.7 34 987-1020 2-38 (149)
474 cd03115 SRP The signal recogni 95.5 0.093 2E-06 54.3 10.4 32 987-1018 3-37 (173)
475 PRK12402 replication factor C 95.5 0.14 2.9E-06 58.4 12.7 25 493-519 37-61 (337)
476 TIGR01351 adk adenylate kinase 95.5 0.012 2.5E-07 63.3 3.9 29 987-1015 2-30 (210)
477 PLN02200 adenylate kinase fami 95.5 0.016 3.5E-07 63.8 4.9 36 983-1020 42-77 (234)
478 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.11 2.3E-06 53.1 10.6 26 983-1008 24-49 (157)
479 COG1102 Cmk Cytidylate kinase 95.5 0.013 2.7E-07 61.2 3.7 29 986-1014 2-30 (179)
480 PRK14952 DNA polymerase III su 95.4 0.1 2.3E-06 64.7 12.3 40 705-747 119-158 (584)
481 PF02562 PhoH: PhoH-like prote 95.4 0.025 5.5E-07 61.3 6.1 23 986-1008 21-43 (205)
482 PRK06893 DNA replication initi 95.4 0.076 1.6E-06 58.1 9.8 26 492-519 39-64 (229)
483 PRK06731 flhF flagellar biosyn 95.4 0.048 1E-06 61.5 8.2 116 983-1111 74-209 (270)
484 COG1066 Sms Predicted ATP-depe 95.4 0.1 2.2E-06 61.5 11.0 98 982-1079 91-206 (456)
485 cd03216 ABC_Carb_Monos_I This 95.4 0.073 1.6E-06 55.1 9.0 72 983-1054 25-111 (163)
486 PRK14964 DNA polymerase III su 95.4 0.16 3.5E-06 61.8 13.2 40 704-746 116-155 (491)
487 PRK14965 DNA polymerase III su 95.4 0.22 4.8E-06 61.9 14.7 39 706-747 121-159 (576)
488 PRK04040 adenylate kinase; Pro 95.3 0.018 4E-07 61.3 4.6 31 985-1015 3-35 (188)
489 PF13481 AAA_25: AAA domain; P 95.3 0.071 1.5E-06 55.8 9.0 74 985-1058 33-156 (193)
490 PF06414 Zeta_toxin: Zeta toxi 95.3 0.061 1.3E-06 57.4 8.6 66 983-1048 14-98 (199)
491 TIGR02655 circ_KaiC circadian 95.3 0.097 2.1E-06 63.6 11.3 75 982-1056 261-366 (484)
492 TIGR02788 VirB11 P-type DNA tr 95.3 0.026 5.6E-07 64.6 6.1 69 985-1053 145-228 (308)
493 PF04665 Pox_A32: Poxvirus A32 95.3 0.17 3.7E-06 56.2 12.2 114 985-1114 14-153 (241)
494 TIGR03499 FlhF flagellar biosy 95.3 0.09 2E-06 59.5 10.3 36 984-1019 194-234 (282)
495 PF13238 AAA_18: AAA domain; P 95.3 0.013 2.8E-07 56.5 3.1 22 987-1008 1-22 (129)
496 PF14516 AAA_35: AAA-like doma 95.3 0.38 8.1E-06 55.8 15.4 37 984-1020 31-70 (331)
497 TIGR02236 recomb_radA DNA repa 95.2 0.1 2.2E-06 59.4 10.6 41 978-1019 90-139 (310)
498 cd02019 NK Nucleoside/nucleoti 95.2 0.056 1.2E-06 48.2 6.6 30 987-1016 2-32 (69)
499 COG1936 Predicted nucleotide k 95.2 0.015 3.2E-07 61.3 3.2 30 986-1016 2-31 (180)
500 PRK13851 type IV secretion sys 95.2 0.026 5.7E-07 65.6 5.7 69 985-1053 163-246 (344)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-58 Score=524.93 Aligned_cols=441 Identities=32% Similarity=0.461 Sum_probs=352.1
Q ss_pred CCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 446 ~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
....+|+|.++... +.|-.-|..-.. |++|+++..|+--.+ ++.+||.|||| ++++|||.|+|.++++|+|-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li~-~i~~Pe~~~~lGv~P--prGvLlHGPPG--CGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELII-HIKHPEVFSSLGVRP--PRGVLLHGPPG--CGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHHH-HhcCchhHhhcCCCC--CCceeeeCCCC--ccHHHHHHHHhhhcCCceEee
Confidence 45668999999998 777777766554 899999988776665 47899999999 999999999999999999988
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
-.+.+.+|.+-|
T Consensus 255 sApeivSGvSGE-------------------------------------------------------------------- 266 (802)
T KOG0733|consen 255 SAPEIVSGVSGE-------------------------------------------------------------------- 266 (802)
T ss_pred cchhhhcccCcc--------------------------------------------------------------------
Confidence 877766643311
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
T Consensus 267 -------------------------------------------------------------------------------- 266 (802)
T KOG0733|consen 267 -------------------------------------------------------------------------------- 266 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC---------ChhhHHHHHHHHhcCC------CCEEEEeeccCCCcc
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG---------NNDAYGALKSKLENLP------SNVVVIGSHTQLDSR 750 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~---------~~e~~~~lk~~Le~L~------g~VviIgS~~~~d~~ 750 (1116)
.+-.|++||+-+.+ ..||||||||||. |+. ..+++.-|.+-|+.|. .+|+|||+||+||+
T Consensus 267 SEkkiRelF~~A~~---~aPcivFiDeIDA-I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs- 341 (802)
T KOG0733|consen 267 SEKKIRELFDQAKS---NAPCIVFIDEIDA-ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS- 341 (802)
T ss_pred cHHHHHHHHHHHhc---cCCeEEEeecccc-cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc-
Confidence 12267888888888 9999999999999 772 2567778888888883 38999999999999
Q ss_pred cccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchh
Q 001244 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 828 (1116)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lp 828 (1116)
||+| +.| ||++++.+..|
T Consensus 342 ---------------------lDpa---------------------------------------LRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 342 ---------------------LDPA---------------------------------------LRRAGRFDREICLGVP 361 (802)
T ss_pred ---------------------cCHH---------------------------------------HhccccccceeeecCC
Confidence 8875 333 77777777777
Q ss_pred hhhcccchhhhhhh-hhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCC-cccc---------ccc
Q 001244 829 TLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLK---------IST 897 (1116)
Q Consensus 829 dlk~R~nIl~Iht~-l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d-~KLv---------IS~ 897 (1116)
+...|..|+++.-. |+-.+ ..|+..||.+|-||-|+|+..||..|...++.|..++.... .+.. +..
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~ 439 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEE 439 (802)
T ss_pred chHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccc
Confidence 77777788777654 44443 78999999999999999999999999999999876633210 1111 111
Q ss_pred c--hhh------------hhHHHHHhhhhhhhhhhhhhh--hccChhHHHHHHhcCCCCCC--------CCCCCcccccC
Q 001244 898 E--SIM------------YGLNILQGIQSESKSLKKSLK--DVVTENEFEKKLLADVIPPS--------DIGVTFDDIGA 953 (1116)
Q Consensus 898 E--SLk------------vglsdFq~alne~K~L~~~lk--~~v~~~e~e~~ll~~iIp~~--------e~~vtfddIgG 953 (1116)
+ +|+ ..+.++ .++...++..... -.+.-++|+..+.. |.|. -++++|+|||+
T Consensus 440 d~S~i~~~~~~~~~~~ld~v~~~~--i~~~~d~~S~E~~~~L~i~~eDF~~Al~~--iQPSakREGF~tVPdVtW~dIGa 515 (802)
T KOG0733|consen 440 DQSSIKITSNAERPLELDRVVQDA--ILNNPDPLSKELLEGLSIKFEDFEEALSK--IQPSAKREGFATVPDVTWDDIGA 515 (802)
T ss_pred hhhhhhcCCcccccccHHHHHHHH--HHhCCCCcChHHhccceecHHHHHHHHHh--cCcchhcccceecCCCChhhccc
Confidence 1 122 111111 1122222221111 12456678776631 1111 14899999999
Q ss_pred cHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHH
Q 001244 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVK 1033 (1116)
Q Consensus 954 ldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir 1033 (1116)
+++++.+|..+|.+|.++|+.|...|+.. +.||||+||||||||.||+|+|++.|++|+.|..++|+++|+|++|+.++
T Consensus 516 L~~vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR 594 (802)
T KOG0733|consen 516 LEEVRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVR 594 (802)
T ss_pred HHHHHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999765 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--hcC
Q 001244 1034 AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLP 1111 (1116)
Q Consensus 1034 ~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~ 1111 (1116)
++|+.|+.++||||||||||.|.++|+..+ .....+++|+||++|||+.. +.+|+||||||||+.||+|++| ||+
T Consensus 595 ~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlD 671 (802)
T KOG0733|consen 595 QVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLD 671 (802)
T ss_pred HHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccC
Confidence 999999999999999999999999987744 66778999999999999964 6789999999999999999999 999
Q ss_pred CeEEC
Q 001244 1112 RRTCV 1116 (1116)
Q Consensus 1112 r~I~V 1116 (1116)
+.+||
T Consensus 672 k~LyV 676 (802)
T KOG0733|consen 672 KLLYV 676 (802)
T ss_pred ceeee
Confidence 99986
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-50 Score=472.18 Aligned_cols=319 Identities=32% Similarity=0.528 Sum_probs=266.7
Q ss_pred HHHHHHHHHhhcCCC-CeEEEEcchhhhhcC--------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCCCC
Q 001244 690 INELFEVALNESKSS-PLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGG 758 (1116)
Q Consensus 690 i~~L~evl~~esk~~-P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~~~~~~~ 758 (1116)
+...|+.+.. .+ |+||||||+|. |+. ..++...|.+.|+.+. +.||||++++++++
T Consensus 266 LR~~f~~a~k---~~~psii~IdEld~-l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s--------- 332 (693)
T KOG0730|consen 266 LRKAFAEALK---FQVPSIIFIDELDA-LCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS--------- 332 (693)
T ss_pred HHHHHHHHhc---cCCCeeEeHHhHhh-hCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc---------
Confidence 3444554444 67 99999999999 663 5678888999999998 69999999999887
Q ss_pred ceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH-HHHHHHhhchhhhhcccchh
Q 001244 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNII 837 (1116)
Q Consensus 759 ~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR-Rfe~qle~~Lpdlk~R~nIl 837 (1116)
||++ +.| ||+++++++.|+..+|..|+
T Consensus 333 -------------ld~a---------------------------------------lRRgRfd~ev~IgiP~~~~RldIl 360 (693)
T KOG0730|consen 333 -------------LDPA---------------------------------------LRRGRFDREVEIGIPGSDGRLDIL 360 (693)
T ss_pred -------------cChh---------------------------------------hhcCCCcceeeecCCCchhHHHHH
Confidence 7764 222 66666666666666777888
Q ss_pred hhhhh-hhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhh
Q 001244 838 SIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 916 (1116)
Q Consensus 838 ~Iht~-l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~ 916 (1116)
.+|+. |.-. .+++|+.++..+.+|.|+|+..+|+.|...++.+ ...+|+.++..+.+
T Consensus 361 ~~l~k~~~~~--~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 361 RVLTKKMNLL--SDVDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRP 418 (693)
T ss_pred HHHHHhcCCc--chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCc
Confidence 88876 3332 6789999999999999999999999999988874 33445444433322
Q ss_pred hhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCc
Q 001244 917 LKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996 (1116)
Q Consensus 917 L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTG 996 (1116)
.. ++.-+ .+-++++|+||||++++|.+|++.|.||+++++.|.+.++ .|++|||||||||||
T Consensus 419 sa---------------~Re~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~ 480 (693)
T KOG0730|consen 419 SA---------------LREIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCG 480 (693)
T ss_pred hh---------------hhhee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcc
Confidence 11 00111 1223789999999999999999999999999999999985 566999999999999
Q ss_pred hHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 997 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 997 KT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
||++|+|+|++++.+|+.+.+++++++|+|++|+.++++|+.|+..+||||||||||.+.+.|++ ...++..+++++||
T Consensus 481 KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g-~~~~v~~RVlsqLL 559 (693)
T KOG0730|consen 481 KTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG-SSSGVTDRVLSQLL 559 (693)
T ss_pred hHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC-CccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999974 34478899999999
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEEC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~V 1116 (1116)
++|||+.. ..+|+|||+||||+.||+|++| ||++.|||
T Consensus 560 tEmDG~e~--~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 560 TEMDGLEA--LKNVLVIAATNRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred HHcccccc--cCcEEEEeccCChhhcCHHHcCCcccceeEee
Confidence 99999975 4689999999999999999999 99999997
No 3
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-45 Score=430.03 Aligned_cols=342 Identities=29% Similarity=0.504 Sum_probs=252.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhcCC-----hhhHHHHHHHHh----cCC-CCEEEEeeccCCCcccccCCCCCc
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN-----NDAYGALKSKLE----NLP-SNVVVIGSHTQLDSRKEKSHPGGL 759 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~~~-----~e~~~~lk~~Le----~L~-g~VviIgS~~~~d~~~~~~~~~~~ 759 (1116)
++..|..+.- .+|+||||.+.|-+-.++ -++...++-.|. +.+ +++++||+++..++
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~---------- 545 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED---------- 545 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------
Confidence 4445555544 799999999999843321 222333333333 323 38999999996554
Q ss_pred eeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhcccchh
Q 001244 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 837 (1116)
Q Consensus 760 ~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R~nIl 837 (1116)
+|. .|..+|..+|.++.|++++|++ +|..... +++
T Consensus 546 ----------------lp~-----------------~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~----------~~n 582 (953)
T KOG0736|consen 546 ----------------LPA-----------------DIQSLFLHEIEVPALSEEQRLEILQWYLNHL----------PLN 582 (953)
T ss_pred ----------------CCH-----------------HHHHhhhhhccCCCCCHHHHHHHHHHHHhcc----------ccc
Confidence 222 4778999999999999999986 4441111 111
Q ss_pred hhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCC-----CcccccccchhhhhHHHHHhhhh
Q 001244 838 SIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-----DAKLKISTESIMYGLNILQGIQS 912 (1116)
Q Consensus 838 ~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~-----d~KLvIS~ESLkvglsdFq~aln 912 (1116)
.++.+..++.++.+|+-.+++.++.-+...+..+.....+. ...-.+-........++|.++.+
T Consensus 583 -----------~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals 651 (953)
T KOG0736|consen 583 -----------QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALS 651 (953)
T ss_pred -----------hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHH
Confidence 23455567777777777777777654411111111000000 00001111112233334433322
Q ss_pred hhhhhhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECC
Q 001244 913 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 992 (1116)
Q Consensus 913 e~K~L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GP 992 (1116)
.. ..+|...+....|| +++|+||||++++|.+|.+.|.+|++|+++|..+ .++..|||||||
T Consensus 652 ~~------------~~~fs~aiGAPKIP----nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGP 713 (953)
T KOG0736|consen 652 RL------------QKEFSDAIGAPKIP----NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGP 713 (953)
T ss_pred HH------------HHhhhhhcCCCCCC----ccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECC
Confidence 22 23455555555566 8999999999999999999999999999999876 555679999999
Q ss_pred CCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhH-HHHHH
Q 001244 993 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE-AMRKM 1071 (1116)
Q Consensus 993 PGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~-~lr~I 1071 (1116)
||||||.||+|+|.++..+|+.|..++|+++|+|++|+++|++|+.|+..+|||||+||+|+|.+.|+..+++. .|.|+
T Consensus 714 PGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRV 793 (953)
T KOG0736|consen 714 PGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRV 793 (953)
T ss_pred CCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877765 89999
Q ss_pred HHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEEC
Q 001244 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1072 lneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~V 1116 (1116)
+.+||.+|||+.......|+||||||||+.|||||+| ||++-+||
T Consensus 794 VSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyv 840 (953)
T KOG0736|consen 794 VSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYV 840 (953)
T ss_pred HHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEe
Confidence 9999999999987567899999999999999999999 99999886
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.4e-42 Score=425.31 Aligned_cols=429 Identities=29% Similarity=0.445 Sum_probs=326.0
Q ss_pred ccccccccccccchhHHHHHHhhhhhhcccccccc-ccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 449 i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k-~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
-+++|+++-.+ +..+..|.+.....|+|+++.+ ++- ..++.|||+||+| +++++||||||++++++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~gi---~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLGI---EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCC---CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEec
Confidence 46899998877 8999999888888888887653 332 3457899999999 99999999999999999887775
Q ss_pred ccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceee
Q 001244 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1116)
Q Consensus 528 ~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 607 (1116)
..+.+ +|
T Consensus 246 ~~i~~-------------------------------------------------------------------------~~ 252 (733)
T TIGR01243 246 PEIMS-------------------------------------------------------------------------KY 252 (733)
T ss_pred HHHhc-------------------------------------------------------------------------cc
Confidence 43322 11
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhH
Q 001244 608 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 687 (1116)
Q Consensus 608 vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~ 687 (1116)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 111 11
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCCC
Q 001244 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPG 757 (1116)
Q Consensus 688 ~~i~~L~evl~~esk~~P~ILfidDie~~l~~~--------~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~~~~~~ 757 (1116)
..+..+|+.+.. ..|+||||||+|.+.... .++.+.|...|+.+. +.|+|||++|+++.
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~-------- 326 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA-------- 326 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhh--------
Confidence 246677777765 789999999999954421 345666777777774 48999999997655
Q ss_pred CceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchh
Q 001244 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 837 (1116)
Q Consensus 758 ~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl 837 (1116)
||+++ . -..+|...|.|++|+.+++...|+
T Consensus 327 --------------ld~al----~---------------r~gRfd~~i~i~~P~~~~R~~Il~----------------- 356 (733)
T TIGR01243 327 --------------LDPAL----R---------------RPGRFDREIVIRVPDKRARKEILK----------------- 356 (733)
T ss_pred --------------cCHHH----h---------------CchhccEEEEeCCcCHHHHHHHHH-----------------
Confidence 55541 0 112577778888887777765554
Q ss_pred hhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCC-cccccc---cchhhhhHHHHHhhhh
Q 001244 838 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGIQS 912 (1116)
Q Consensus 838 ~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d-~KLvIS---~ESLkvglsdFq~aln 912 (1116)
+++. ...+ .+.+++.++..+.+|+++++..++..|+..++.+.......+ ....+. .+.+.+...+|..+..
T Consensus 357 -~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~ 433 (733)
T TIGR01243 357 -VHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALK 433 (733)
T ss_pred -HHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHh
Confidence 2211 1112 567889999999999999999999999998887654311000 000111 1233444556655544
Q ss_pred hhhhhhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECC
Q 001244 913 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 992 (1116)
Q Consensus 913 e~K~L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GP 992 (1116)
..++... . ... ...+.++|++++|++.+++.|.+.+.+++.+++.|.+.++ ++++++|||||
T Consensus 434 ~v~ps~~---------------~-~~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~Gp 495 (733)
T TIGR01243 434 MVEPSAI---------------R-EVL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLFGP 495 (733)
T ss_pred hcccccc---------------c-hhh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEECC
Confidence 3332110 0 000 1122678999999999999999999999999999998775 45689999999
Q ss_pred CCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHH
Q 001244 993 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMK 1072 (1116)
Q Consensus 993 PGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~Il 1072 (1116)
||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+..+|+||||||||.|++.|..........+++
T Consensus 496 pGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~ 575 (733)
T TIGR01243 496 PGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIV 575 (733)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887655556678999
Q ss_pred HHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEEC
Q 001244 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1073 neLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~V 1116 (1116)
++|+..|+++.. ..+++||||||+|+.||+|++| ||++.|+|
T Consensus 576 ~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v 619 (733)
T TIGR01243 576 NQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILV 619 (733)
T ss_pred HHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEe
Confidence 999999999864 4689999999999999999999 99999875
No 5
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-42 Score=393.28 Aligned_cols=336 Identities=24% Similarity=0.329 Sum_probs=270.9
Q ss_pred HHHHHHHHHHhhcC-----CCCeEEEEcchhhhhc-------C----ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcc
Q 001244 689 AINELFEVALNESK-----SSPLIVFVKDIEKSLT-------G----NNDAYGALKSKLENLPS--NVVVIGSHTQLDSR 750 (1116)
Q Consensus 689 ~i~~L~evl~~esk-----~~P~ILfidDie~~l~-------~----~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~ 750 (1116)
-++.||.-+.+|-| .+=-||.|||||. |+ | ....+|-|.++++.... +|+|||=||+.|.
T Consensus 304 NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDA-ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl- 381 (744)
T KOG0741|consen 304 NVRKLFADAEEEQRRLGANSGLHIIIFDEIDA-ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL- 381 (744)
T ss_pred HHHHHHHhHHHHHHhhCccCCceEEEehhhHH-HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh-
Confidence 45566666666655 2345999999999 66 2 36788999899887754 9999999997554
Q ss_pred cccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchh
Q 001244 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 828 (1116)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lp 828 (1116)
+ |||+|| |||+|+|++||
T Consensus 382 ---------------------I---------------------------------------DEALLRPGRlEVqmEIsLP 401 (744)
T KOG0741|consen 382 ---------------------I---------------------------------------DEALLRPGRLEVQMEISLP 401 (744)
T ss_pred ---------------------H---------------------------------------HHHhcCCCceEEEEEEeCC
Confidence 2 779999 99999999999
Q ss_pred hhhcccchhhhhhh-hhcCCC--CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHH
Q 001244 829 TLKGQSNIISIRSV-LSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 905 (1116)
Q Consensus 829 dlk~R~nIl~Iht~-l~~~~l--ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvgls 905 (1116)
|.++|.+|++|||. |+++++ .++||++||.+|++|+|++|+++|++|.|+|+.|++....+........|.|++..+
T Consensus 402 DE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~ 481 (744)
T KOG0741|consen 402 DEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRG 481 (744)
T ss_pred CccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHH
Confidence 99999999999998 999998 888999999999999999999999999999999998765333444567789999999
Q ss_pred HHHhhhhhhhhhhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCe
Q 001244 906 ILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK 985 (1116)
Q Consensus 906 dFq~alne~K~L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~ 985 (1116)
||..++.++++.++ +.++++++.+..++|.++... . .+.+.-..++. ..+.++ ..+..
T Consensus 482 DFl~aL~dVkPAFG-----~see~l~~~~~~Gmi~~g~~v---~------~il~~G~llv~-qvk~s~-------~s~lv 539 (744)
T KOG0741|consen 482 DFLNALEDVKPAFG-----ISEEDLERFVMNGMINWGPPV---T------RILDDGKLLVQ-QVKNSE-------RSPLV 539 (744)
T ss_pred HHHHHHHhcCcccC-----CCHHHHHHHHhCCceeecccH---H------HHHhhHHHHHH-Hhhccc-------cCcce
Confidence 99999999999999 778999999999999876521 1 11122122222 122222 34567
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc-ccchHHHHHHHHHHHhcCCCeEEEEccccccc-----cCC
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSML-----GRR 1059 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~-~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Ll-----g~R 1059 (1116)
.+||+||||+|||+||..||..+++||+++-.++-+..+ -......++++|++||+++.+||++|+||+|+ |+|
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPR 619 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPR 619 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCch
Confidence 999999999999999999999999999998766543322 22334589999999999999999999999997 455
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcH-HHHhhcCCeEEC
Q 001244 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRTCV 1116 (1116)
Q Consensus 1060 ~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~-ALlRRF~r~I~V 1116 (1116)
++ +.++|.|+.++...+++ +++++|+|||.+...|.+ .++..|+-.|+|
T Consensus 620 fS-------N~vlQaL~VllK~~ppk-g~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 620 FS-------NLVLQALLVLLKKQPPK-GRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred hh-------HHHHHHHHHHhccCCCC-CceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 44 88999999999998875 679999999998877665 677788877765
No 6
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=377.39 Aligned_cols=254 Identities=62% Similarity=0.979 Sum_probs=234.8
Q ss_pred hhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhhhhhhhh-hccChhHHHHHH
Q 001244 856 LCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLK-DVVTENEFEKKL 934 (1116)
Q Consensus 856 Lai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~L~~~lk-~~v~~~e~e~~l 934 (1116)
.+..+..+...-++.++.||++||++++..+.... ...++.+++.++..+|+....+ .+++ +++..++++..+
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i 77 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRI 77 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHh
Confidence 45566677778899999999999999876555444 7888999999998888766543 3334 378899999999
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 935 l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
...+++|.+++++|+||||++.+++++++.|.+|+++|++|..+++.+|++|||||||||||||+||+|+|+++|.+|+.
T Consensus 78 ~s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 78 ASDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1015 ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1015 Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
|+++.+.++|+|++++.++.+|..|.+.+|+||||||||++++.| ...+|++++.+.++||..|||+.++.+.+|+|+|
T Consensus 158 v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 158 VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 999999999999999999999999999999999999999999999 6799999999999999999999998888999999
Q ss_pred EeCCCCCCcHHHHhhcCCeEEC
Q 001244 1095 ATNRPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1095 TTNrp~~LD~ALlRRF~r~I~V 1116 (1116)
|||||.+||+|++|||+++++|
T Consensus 237 ATNRP~DlDeAiiRR~p~rf~V 258 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIRRLPRRFHV 258 (386)
T ss_pred CCCCCccHHHHHHHhCcceeee
Confidence 9999999999999999999987
No 7
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=354.00 Aligned_cols=337 Identities=26% Similarity=0.417 Sum_probs=250.3
Q ss_pred HHHHHHHHHHhhcC-CCCeEEEEcchhhhhc------CChhh-HHHH-------HHHHhcCCCCEEEEeeccCCCccccc
Q 001244 689 AINELFEVALNESK-SSPLIVFVKDIEKSLT------GNNDA-YGAL-------KSKLENLPSNVVVIGSHTQLDSRKEK 753 (1116)
Q Consensus 689 ~i~~L~evl~~esk-~~P~ILfidDie~~l~------~~~e~-~~~l-------k~~Le~L~g~VviIgS~~~~d~~~~~ 753 (1116)
-||..+..+++++- ++|.||++||+|-++. ++... ++.+ .....+-...|.+|++-...
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~------ 551 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL------ 551 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh------
Confidence 46666666666666 9999999999999766 11111 1111 11111223355667665521
Q ss_pred CCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcc
Q 001244 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQ 833 (1116)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R 833 (1116)
|+ |.+ -+ . -..+|..++.++.|.-++|-..++..+...+-
T Consensus 552 --------------qt--l~~----~L---~------------s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~----- 591 (952)
T KOG0735|consen 552 --------------QT--LNP----LL---V------------SPLLFQIVIALPAPAVTRRKEILTTIFSKNLS----- 591 (952)
T ss_pred --------------hh--cCh----hh---c------------CccceEEEEecCCcchhHHHHHHHHHHHhhhh-----
Confidence 11 111 00 0 12288999999999888875444422221110
Q ss_pred cchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhh
Q 001244 834 SNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSE 913 (1116)
Q Consensus 834 ~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne 913 (1116)
+ ....||+-++.+|.||..-|++-+|..|+++++. +.+....+ .+..+.+..++.+|.-..
T Consensus 592 -----~--------~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~l---eris~~~k-lltke~f~ksL~~F~P~a-- 652 (952)
T KOG0735|consen 592 -----D--------ITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFL---ERISNGPK-LLTKELFEKSLKDFVPLA-- 652 (952)
T ss_pred -----h--------hhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHH---HHhccCcc-cchHHHHHHHHHhcChHH--
Confidence 0 0234777799999999999999999999999983 22223344 566666666666663210
Q ss_pred hhhhhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCC
Q 001244 914 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993 (1116)
Q Consensus 914 ~K~L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPP 993 (1116)
+ .++---...+..|+||||+.++++.|.+.++||.+||.+|.+..+. -..||||||||
T Consensus 653 ---L------------------R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGpp 710 (952)
T KOG0735|consen 653 ---L------------------RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPP 710 (952)
T ss_pred ---h------------------hhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCC
Confidence 1 1111111225789999999999999999999999999999987754 44799999999
Q ss_pred CCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHH
Q 001244 994 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1116)
Q Consensus 994 GTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~Iln 1073 (1116)
|||||+||.|+|..+++.||.+..++++++|+|.+|+++|.+|..|+..+|||+|+||+|++.++|+. .......+++|
T Consensus 711 GcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh-DsTGVTDRVVN 789 (952)
T KOG0735|consen 711 GCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH-DSTGVTDRVVN 789 (952)
T ss_pred CCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC-CCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998864 33445679999
Q ss_pred HHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEE
Q 001244 1074 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTC 1115 (1116)
Q Consensus 1074 eLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~ 1115 (1116)
+||++|||... -..|.|+|+|.||+.||||++| ||++.++
T Consensus 790 QlLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~ 831 (952)
T KOG0735|consen 790 QLLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVY 831 (952)
T ss_pred HHHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeee
Confidence 99999999865 4679999999999999999999 9999875
No 8
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-36 Score=355.39 Aligned_cols=373 Identities=32% Similarity=0.460 Sum_probs=290.2
Q ss_pred eeeecCCCCCCCCCCC--CcCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCCh-
Q 001244 645 GVRFDRSIPEGNNLGG--FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN- 721 (1116)
Q Consensus 645 gV~Fd~~~~~~~~l~~--~c~~~~~~~~~~~~~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~~- 721 (1116)
||.+..|+++|.++.+ .+.....+ ..-.-.-+.++|....+..+..+|+-+.. ..|.|+|+||+|.+.....
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANEGAEF--LSINGPEILSKYVGESELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhccCcc--cccCcchhhhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhhhcccCccc
Confidence 6788889999998883 12212212 22222224588888889999999988888 8889999999999655322
Q ss_pred -------hhHHHHHHHHhcCC-CCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHH
Q 001244 722 -------DAYGALKSKLENLP-SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKA 793 (1116)
Q Consensus 722 -------e~~~~lk~~Le~L~-g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~ 793 (1116)
..+..+...++.+. +.|++++.++.++. +|+
T Consensus 95 ~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~----------------------~~~------------------- 133 (494)
T COG0464 95 DQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG----------------------LDP------------------- 133 (494)
T ss_pred cccchhhHHHHHHHHhcccccCCceEEEeecCCccc----------------------cCh-------------------
Confidence 34666666666664 45888887775544 443
Q ss_pred HhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHH
Q 001244 794 LKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKI 871 (1116)
Q Consensus 794 ~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkI 871 (1116)
+.++ +|++++++.+++...+..|+.+|+.+...+. ..++.+++..+.++.++++..+
T Consensus 134 --------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 134 --------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred --------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHH
Confidence 3333 8888888888888888889999987332222 6789999999999999999999
Q ss_pred HHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhhhhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccc
Q 001244 872 VGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDI 951 (1116)
Q Consensus 872 V~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddI 951 (1116)
++.+...++.+.. ....+.+.+...++........+ . ..+-.....++|+++
T Consensus 193 ~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~----------~---------~~~~~~~~~v~~~di 244 (494)
T COG0464 193 AKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLP----------S---------RGVLFEDEDVTLDDI 244 (494)
T ss_pred HHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCc----------c---------cccccCCCCcceehh
Confidence 9999888888653 11122333344444333222111 0 112233447899999
Q ss_pred cCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHH
Q 001244 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY 1031 (1116)
Q Consensus 952 gGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~ 1031 (1116)
+|++..++.+.+.+.+++.+++.|...+ .++++++|||||||||||+||+|+|++++.+|+.++.++++++|+|+++++
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 9999999999999999999999998755 456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--h
Q 001244 1032 VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--R 1109 (1116)
Q Consensus 1032 Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--R 1109 (1116)
++++|..|++.+||||||||||.|+..|.... .....+++++|+.+|+++.. ...|+||+|||+|+.||+|++| |
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~--~~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEK--AEGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCc--cCceEEEecCCCccccCHhhcccCc
Confidence 99999999999999999999999998886532 23337999999999999875 4679999999999999999999 9
Q ss_pred cCCeEEC
Q 001244 1110 LPRRTCV 1116 (1116)
Q Consensus 1110 F~r~I~V 1116 (1116)
|+++|+|
T Consensus 401 fd~~i~v 407 (494)
T COG0464 401 FDRLIYV 407 (494)
T ss_pred cceEeec
Confidence 9999986
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-34 Score=317.15 Aligned_cols=171 Identities=41% Similarity=0.712 Sum_probs=158.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
.++++++||||+++++++|++.|.+|+.+|++|.+.|+ .|++|||||||||||||+||+|+|++.++.|+++..++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 34889999999999999999999999999999999986 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
+|+|+..+.++.+|..|+.++||||||||||.+.++|.+. +.....++++-+||.+|||+.+ ..+|-||+||||++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCcc
Confidence 9999999999999999999999999999999999988654 2233456777899999999976 57899999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.|||||+| ||+++|++
T Consensus 302 ~LDPALLRPGR~DRkIEf 319 (406)
T COG1222 302 ILDPALLRPGRFDRKIEF 319 (406)
T ss_pred ccChhhcCCCcccceeec
Confidence 99999999 99999975
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-34 Score=316.42 Aligned_cols=179 Identities=48% Similarity=0.806 Sum_probs=166.3
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 935 l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
..+++.. .+.+.|+||.|+.++|+-|+++|.+|+..|+.|. ++.+|+++|||+||||||||+||+|||.+++..|++
T Consensus 199 erdIl~~-np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFN 275 (491)
T KOG0738|consen 199 ERDILQR-NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFN 275 (491)
T ss_pred HHHHhcc-CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEE
Confidence 3344443 3479999999999999999999999999999997 458999999999999999999999999999999999
Q ss_pred EeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCC--CCEEE
Q 001244 1015 ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK--ERVLV 1092 (1116)
Q Consensus 1015 Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~--~kVLV 1092 (1116)
|+.+++.++|-|++|+.++-+|++|+.++|++|||||||.|..+|++.++|++.+++.++||++|||+..... ..|+|
T Consensus 276 VSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 276 VSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred echhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976432 23899
Q ss_pred EEEeCCCCCCcHHHHhhcCCeEEC
Q 001244 1093 LAATNRPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1093 IaTTNrp~~LD~ALlRRF~r~I~V 1116 (1116)
+|+||.||+||+||+|||.++|+|
T Consensus 356 LAATN~PWdiDEAlrRRlEKRIyI 379 (491)
T KOG0738|consen 356 LAATNFPWDIDEALRRRLEKRIYI 379 (491)
T ss_pred EeccCCCcchHHHHHHHHhhheee
Confidence 999999999999999999999997
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=303.93 Aligned_cols=178 Identities=48% Similarity=0.819 Sum_probs=166.8
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 935 l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
+++.|-.+.+++.|+|+.|++.++++|+++|.+|++.|++|... ++|+++|||||||||||++||+|+|.+.+..|+.
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS 196 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS 196 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE
Confidence 34455566779999999999999999999999999999999754 7899999999999999999999999999999999
Q ss_pred EeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1015 ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1015 Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
|+.++|+++|.|++|+.++++|++|+.+.|+||||||||.|.+.|.. ++.++.++|..+||.+|.|+.. ++..|+|+|
T Consensus 197 vSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~-d~~gvLVLg 274 (439)
T KOG0739|consen 197 VSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGN-DNDGVLVLG 274 (439)
T ss_pred eehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhcccc-CCCceEEEe
Confidence 99999999999999999999999999999999999999999888865 7888999999999999999875 578999999
Q ss_pred EeCCCCCCcHHHHhhcCCeEEC
Q 001244 1095 ATNRPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1095 TTNrp~~LD~ALlRRF~r~I~V 1116 (1116)
+||-||.||.||+|||.++|||
T Consensus 275 ATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred cCCCchhHHHHHHHHhhcceec
Confidence 9999999999999999999997
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-30 Score=298.78 Aligned_cols=169 Identities=40% Similarity=0.701 Sum_probs=158.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
++.|.+|||++....+|.+.+.. +++|+.|...|+ .|++|||||||||||||+||+|||.++++||+.|+.+++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999988 999999999986 5669999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCC--CCCEEEEEEeCCCCCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 1102 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~--~~kVLVIaTTNrp~~L 1102 (1116)
.|++|++++.+|+.|+..+|||+||||||.+.++|.. ...+.-++|+.+|+..||++..+. +.+|+||||||||+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999999876 455667899999999999987643 4789999999999999
Q ss_pred cHHHHh--hcCCeEEC
Q 001244 1103 DEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1103 D~ALlR--RF~r~I~V 1116 (1116)
|+||+| ||++.|.+
T Consensus 343 DpaLRRaGRFdrEI~l 358 (802)
T KOG0733|consen 343 DPALRRAGRFDREICL 358 (802)
T ss_pred CHHHhccccccceeee
Confidence 999999 99999975
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-29 Score=289.63 Aligned_cols=173 Identities=39% Similarity=0.652 Sum_probs=158.7
Q ss_pred CCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 939 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 939 Ip~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
.|....+++|+|+-|.++++++|.+.+.+ ++.|..|.+.| .+-++||||+||||||||+||||+|.+.++||+....+
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS 371 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS 371 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc
Confidence 33334588999999999999999999875 89999999877 45569999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC
Q 001244 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1116)
Q Consensus 1019 eL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr 1098 (1116)
++...|+|...++++.+|..|++.+||||||||||.+.++|.....+ ..+..+|+||.+|||+.. +..|+|||+||.
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~q--NeGiIvigATNf 448 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQ--NEGIIVIGATNF 448 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCc--CCceEEEeccCC
Confidence 99999999999999999999999999999999999999988764444 889999999999999976 578999999999
Q ss_pred CCCCcHHHHh--hcCCeEEC
Q 001244 1099 PFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1099 p~~LD~ALlR--RF~r~I~V 1116 (1116)
|+.||+||.| ||+++|.|
T Consensus 449 pe~LD~AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTV 468 (752)
T ss_pred hhhhhHHhcCCCccceeEec
Confidence 9999999999 99999986
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.95 E-value=1.9e-27 Score=281.18 Aligned_cols=305 Identities=22% Similarity=0.372 Sum_probs=215.8
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHH---hcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCc
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKL---ENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~L---e~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~ 779 (1116)
.+|.|+.|+|++.|+ ++..+...|+..- ...+..+|+++... . +|.+
T Consensus 80 ~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~---------------------------~--~p~e 129 (489)
T CHL00195 80 ETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASEL---------------------------N--IPKE 129 (489)
T ss_pred CCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCC---------------------------C--CCHH
Confidence 458999999999977 4445554444433 22233455555433 1 3444
Q ss_pred ccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhhhhcCCCCCCCchhhhcc
Q 001244 780 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIK 859 (1116)
Q Consensus 780 ~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~ 859 (1116)
+. +++ -.+++++|+.+++...++.... .+ ...+...+++.|+..
T Consensus 130 l~-----------------~~~-~~~~~~lP~~~ei~~~l~~~~~-~~-----------------~~~~~~~~~~~l~~~ 173 (489)
T CHL00195 130 LK-----------------DLI-TVLEFPLPTESEIKKELTRLIK-SL-----------------NIKIDSELLENLTRA 173 (489)
T ss_pred HH-----------------hce-eEEeecCcCHHHHHHHHHHHHH-hc-----------------CCCCCHHHHHHHHHH
Confidence 43 222 3578999998888644332211 00 011355577889999
Q ss_pred ccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhhhhhhhhhccChhHHHHHHhcCCC
Q 001244 860 DQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVI 939 (1116)
Q Consensus 860 dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~L~~~lk~~v~~~e~e~~ll~~iI 939 (1116)
..+++-.+++.++..++.. ++. ++.+++...+. +.+.+ +. ...++
T Consensus 174 ~~gls~~~~~~~~~~~~~~-----------~~~--~~~~~~~~i~~-------~k~q~-------~~--------~~~~l 218 (489)
T CHL00195 174 CQGLSLERIRRVLSKIIAT-----------YKT--IDENSIPLILE-------EKKQI-------IS--------QTEIL 218 (489)
T ss_pred hCCCCHHHHHHHHHHHHHH-----------cCC--CChhhHHHHHH-------HHHHH-------Hh--------hhccc
Confidence 9999999999988764431 111 22333322111 11110 00 01222
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc
Q 001244 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1116)
Q Consensus 940 p~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se 1019 (1116)
.......+|+++||++.+|+.+.+....+ ...+...++ .+++|||||||||||||++|++||++++.+|+.++++.
T Consensus 219 e~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~ 294 (489)
T CHL00195 219 EFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGK 294 (489)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHH
Confidence 32234678999999999999998755422 222333443 45689999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
+.++|+|+++.+++++|..|+..+||||||||||.++..+...++....++++++|+..|+.. ..+|+||||||++
T Consensus 295 l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~ 370 (489)
T CHL00195 295 LFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNI 370 (489)
T ss_pred hcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCCh
Confidence 999999999999999999999999999999999999876655556677889999999988753 4679999999999
Q ss_pred CCCcHHHHh--hcCCeEEC
Q 001244 1100 FDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1100 ~~LD~ALlR--RF~r~I~V 1116 (1116)
+.||++++| ||++.|+|
T Consensus 371 ~~Ld~allR~GRFD~~i~v 389 (489)
T CHL00195 371 DLLPLEILRKGRFDEIFFL 389 (489)
T ss_pred hhCCHHHhCCCcCCeEEEe
Confidence 999999999 99999886
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-28 Score=256.78 Aligned_cols=172 Identities=40% Similarity=0.686 Sum_probs=158.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc
Q 001244 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1116)
Q Consensus 942 ~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~ 1021 (1116)
+.+++++.||||++-+++++++++.+|+.+.++|.+-|+ .|++|+|||||||||||+||+|+|++..+.|+++..+++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 346899999999999999999999999999999999885 5669999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1022 sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
.+|.|+..+.++.+|..|+.++|+||||||||.+..+|+.. +.....++++-+||.+|||+.. ..+|-||.+||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcc
Confidence 99999999999999999999999999999999999888653 3334567899999999999975 5789999999999
Q ss_pred CCCcHHHHh--hcCCeEEC
Q 001244 1100 FDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1100 ~~LD~ALlR--RF~r~I~V 1116 (1116)
+.||||++| |++++|.+
T Consensus 305 dtldpallrpgrldrkief 323 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEF 323 (408)
T ss_pred cccCHhhcCCccccccccC
Confidence 999999999 99999863
No 16
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.4e-28 Score=295.57 Aligned_cols=344 Identities=20% Similarity=0.220 Sum_probs=264.4
Q ss_pred ceeeeccccCCCCceeeeecCCCCCCCCCC-----CCcCCCCC---cccccccccccCCCcchhhHHHHHHHHHHHHhhc
Q 001244 630 GRVILPFEDNDFSKIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNES 701 (1116)
Q Consensus 630 g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~-----~~c~~~~~---~~~~~~~~~~d~s~~~~~~~~~i~~L~evl~~es 701 (1116)
+++...|-.++. =||.|++|+++|++|+ +.|..+.. ||++.++.| +|+|.+++++++.-|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh--hccccCcHHHHHHHHHHHHhc--
Confidence 455444556664 3899999999999987 88988877 999999998 789999999999999999888
Q ss_pred CCCCeEEEEcchhhhhc-----CChhhHHHHHHHHhcC------CCCEEEEeeccCCCcccccCCCCCceeeccCCcchh
Q 001244 702 KSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 770 (1116)
Q Consensus 702 k~~P~ILfidDie~~l~-----~~~e~~~~lk~~Le~L------~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~ 770 (1116)
++|+||||||||. |+ .+.++|+.+++.|.+| .|+||||||+|++|.
T Consensus 362 -~qPSIIffdeIdG-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda--------------------- 418 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDG-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA--------------------- 418 (1080)
T ss_pred -cCceEEecccccc-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccc---------------------
Confidence 9999999999998 66 5678888888877776 569999999999887
Q ss_pred hccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhcccchhhhhhhhhcCCC
Q 001244 771 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL 848 (1116)
Q Consensus 771 ~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R~nIl~Iht~l~~~~l 848 (1116)
+|+| ++| ||+++|+|+||+...|..|+.|||..|.+.+
T Consensus 419 -~dpa---------------------------------------LRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i 458 (1080)
T KOG0732|consen 419 -IDPA---------------------------------------LRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI 458 (1080)
T ss_pred -cchh---------------------------------------hcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC
Confidence 7764 434 9999999999999999999999999999888
Q ss_pred CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCC-cccccccchhhhhHHHHHhhhhhhhhhhhhhhhccCh
Q 001244 849 DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTE 927 (1116)
Q Consensus 849 ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d-~KLvIS~ESLkvglsdFq~alne~K~L~~~lk~~v~~ 927 (1116)
.-.-+..|+..+.+|.|+|+..+|..|+..++.+.++++|.. .++.+...-+++.+.+|..++..+-+...+
T Consensus 459 ~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R------- 531 (1080)
T KOG0732|consen 459 SRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR------- 531 (1080)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc-------
Confidence 666788899999999999999999999999999999999765 888899999999999998887654332110
Q ss_pred hHHHHHHhcCCCCCCCCCCC-------------cccccCcHHHHHHHHHHHHccccChhh-hhcCCCCCCCeEEEEECCC
Q 001244 928 NEFEKKLLADVIPPSDIGVT-------------FDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPP 993 (1116)
Q Consensus 928 ~e~e~~ll~~iIp~~e~~vt-------------fddIgGldevk~~L~e~V~lpl~~pel-f~~~~l~~p~~gILL~GPP 993 (1116)
...++....... ...+.-+......+.+...+..+.-+. |.-..+.+| .+||.|..
T Consensus 532 --------~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~ 601 (1080)
T KOG0732|consen 532 --------SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGK 601 (1080)
T ss_pred --------cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCc
Confidence 011111111000 000011111111111111111110000 111222333 58899999
Q ss_pred CCchHHHHHHHHHHh-CCeeeEEecccccccc-ccchHHHHHHHHHHHhcCCCeEEEEccccccccCC
Q 001244 994 GTGKTMLAKAVATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1116)
Q Consensus 994 GTGKT~LArAIA~el-g~pfI~Is~seL~sk~-~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R 1059 (1116)
|.|.+++..||.+.+ ++++..++.++++..- .+..+..|..+|.+|++..||||||.++|.|....
T Consensus 602 ~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 602 GSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred ccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcC
Confidence 999999999999999 8999999998887765 66778899999999999999999999999997443
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-26 Score=245.39 Aligned_cols=168 Identities=39% Similarity=0.696 Sum_probs=153.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
+.+++-+||++.+++++++.+.+|.++|++|...++..| +|+|||||||||||.||+|+|++..+.|++++.+++..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 568999999999999999999999999999999998776 9999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC---CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~---~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
+|+..+.++.+|-.|+.++|+|||+||||++...|.. +++++ .++.+-+|+.++||+.. ..++-||.+||+.+.
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdse-vqrtmlellnqldgfea--tknikvimatnridi 298 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSE-VQRTMLELLNQLDGFEA--TKNIKVIMATNRIDI 298 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHH-HHHHHHHHHHhcccccc--ccceEEEEecccccc
Confidence 9999999999999999999999999999999866532 23444 45666789999999976 467999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||+|++| |++++|.+
T Consensus 299 ld~allrpgridrkief 315 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEF 315 (404)
T ss_pred ccHhhcCCCcccccccC
Confidence 9999999 99998863
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.94 E-value=8e-27 Score=248.89 Aligned_cols=164 Identities=33% Similarity=0.553 Sum_probs=147.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
+++|+|++|++++++..+-+ +.++..|+.|..+ .+++||+|||||||||++|+|+|++.+.||+.+...+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli-~~yLenPe~Fg~W----APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLI-MEYLENPERFGDW----APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHH-HHHhhChHHhccc----CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 67999999999999888644 4568999999765 358999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcH
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ 1104 (1116)
+|+..+.|+++|+.|++.+||||||||+|.+.-.|..+........++|.||++|||+. .+..|..||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997666554444556789999999999997 4678999999999999999
Q ss_pred HHHhhcCCeEE
Q 001244 1105 AVVRRLPRRTC 1115 (1116)
Q Consensus 1105 ALlRRF~r~I~ 1115 (1116)
|+++||...|.
T Consensus 270 aiRsRFEeEIE 280 (368)
T COG1223 270 AIRSRFEEEIE 280 (368)
T ss_pred HHHhhhhheee
Confidence 99999998886
No 19
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.3e-27 Score=268.77 Aligned_cols=170 Identities=55% Similarity=0.946 Sum_probs=162.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
..+.|+|+.|++.+++.+.+++.+|+.++++|.. +..|.+++||+||||+|||+|++|||.++++.|+.+++++|.++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g--lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG--LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc--cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 3688999999999999999999999999999974 47788999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD 1103 (1116)
|+|+.|+.++.+|..|+..+|+||||||||+++..| ...+++..+++..+|+..+++.......+|+||||||+|+.+|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 999999999999999999999999999999999998 5678888899999999999999988888999999999999999
Q ss_pred HHHHhhcCCeEEC
Q 001244 1104 EAVVRRLPRRTCV 1116 (1116)
Q Consensus 1104 ~ALlRRF~r~I~V 1116 (1116)
+|++|||.+++||
T Consensus 305 ea~~Rrf~kr~yi 317 (428)
T KOG0740|consen 305 EAARRRFVKRLYI 317 (428)
T ss_pred HHHHHHhhceeee
Confidence 9999999999986
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-26 Score=277.95 Aligned_cols=172 Identities=41% Similarity=0.680 Sum_probs=156.5
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc
Q 001244 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1116)
Q Consensus 941 ~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL 1020 (1116)
..+.+++|.|+.|.++++++|+|.|.. |++|+.|.+.| .+.++|+||+||||||||.||+|+|.++|+||+.++.+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 345579999999999999999999984 99999999988 5667999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCC---CCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC
Q 001244 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1116)
Q Consensus 1021 ~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~---~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN 1097 (1116)
+..+.|....+++.+|..|+..+||||||||||.+.+.|. ..+.+......+|+|+.+|||+.. ...|+|||+||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccC
Confidence 9999998899999999999999999999999999998884 334445556789999999999976 36799999999
Q ss_pred CCCCCcHHHHh--hcCCeEEC
Q 001244 1098 RPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1098 rp~~LD~ALlR--RF~r~I~V 1116 (1116)
+++.||+|++| ||+++|+|
T Consensus 459 r~d~ld~allrpGRfdr~i~i 479 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQI 479 (774)
T ss_pred CccccCHHhcCCCccccceec
Confidence 99999999999 99999986
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-26 Score=247.76 Aligned_cols=168 Identities=41% Similarity=0.692 Sum_probs=152.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.-++.||||++.++++|++.+.+|+.||++|...++ +|++||+|||+||||||.||+|+|+...+.|+++-.+++..+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 457999999999999999999999999999999885 6779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC---CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~---~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
.|+..+.++++|+.|..++|+|+||||||.+..+|.+ +++.+ .++.+-+||.++||+.. +..|-||.|||+.+.
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerE-iQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGERE-IQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHH-HHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 9999999999999999999999999999999877743 23444 44555689999999975 578999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
|||||+| |++++|.+
T Consensus 337 LDPaLiRPGrIDrKIef 353 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEF 353 (440)
T ss_pred cCHhhcCCCcccccccc
Confidence 9999999 99999863
No 22
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.6e-26 Score=241.22 Aligned_cols=170 Identities=38% Similarity=0.664 Sum_probs=155.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
.+++++.|+||..++++.|++.+.+|+.+|+.|...++ .|++|||||||||||||.+|+|+|+..++.|+++-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgi-dppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45889999999999999999999999999999999986 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
+|+|+..+.++.+|+.|+...-||||+||||.+.|.|+.. +.....++.+-+++.++||+.+ +.+|-|+.+||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp--rgnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP--RGNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC--CCCeEEEeecCCCC
Confidence 9999999999999999999899999999999999998764 2233445666789999999976 57899999999999
Q ss_pred CCcHHHHh--hcCCeEE
Q 001244 1101 DLDEAVVR--RLPRRTC 1115 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~ 1115 (1116)
.|||||+| |+++++.
T Consensus 328 tldpallrpgrldrkve 344 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVE 344 (435)
T ss_pred CcCHhhcCCccccccee
Confidence 99999999 9999875
No 23
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9e-26 Score=240.49 Aligned_cols=169 Identities=36% Similarity=0.661 Sum_probs=153.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
+.-++.||||++.++++|.+++.+|+.|++.|...++ +|++|+|+|||||||||++|+|.|...+..|.++-.+.+...
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 3557999999999999999999999999999999985 566999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC---chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP---GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~---~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
|+|...+.++..|..|+..+|+||||||+|.+..+|+.. ++.+ .++.+-+||.++||+.+ ..+|-|||+||+.+
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE-VQRTMLELLNQLDGFss--~~~vKviAATNRvD 321 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSS--DDRVKVIAATNRVD 321 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH-HHHHHHHHHHhhcCCCC--ccceEEEeeccccc
Confidence 999999999999999999999999999999998887653 3333 45566789999999987 56899999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.||||++| |++++|.+
T Consensus 322 iLDPALlRSGRLDRKIEf 339 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEF 339 (424)
T ss_pred ccCHHHhhcccccccccC
Confidence 99999999 99999863
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.93 E-value=2.8e-26 Score=244.79 Aligned_cols=201 Identities=27% Similarity=0.380 Sum_probs=170.6
Q ss_pred hccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCCCCCCccccccccchhhhhhhHH
Q 001244 475 HLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMF 553 (1116)
Q Consensus 475 hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~ 553 (1116)
+|+.++-+ +| ++++||++||+| ++++|||||||++..+|||.+.++.|.|
T Consensus 139 yLenPe~Fg~W------APknVLFyGppG--TGKTm~Akalane~kvp~l~vkat~liG--------------------- 189 (368)
T COG1223 139 YLENPERFGDW------APKNVLFYGPPG--TGKTMMAKALANEAKVPLLLVKATELIG--------------------- 189 (368)
T ss_pred HhhChHHhccc------CcceeEEECCCC--ccHHHHHHHHhcccCCceEEechHHHHH---------------------
Confidence 46665433 55 589999999999 8999999999999999999999999999
Q ss_pred HHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceee
Q 001244 554 AKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVI 633 (1116)
Q Consensus 554 ~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~ 633 (1116)
+|||.++
T Consensus 190 ----------------------------------------------------ehVGdga--------------------- 196 (368)
T COG1223 190 ----------------------------------------------------EHVGDGA--------------------- 196 (368)
T ss_pred ----------------------------------------------------HHhhhHH---------------------
Confidence 5677532
Q ss_pred eccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcch
Q 001244 634 LPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 713 (1116)
Q Consensus 634 l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDi 713 (1116)
+.|++||+.+.+ ..|||+||||+
T Consensus 197 ------------------------------------------------------r~Ihely~rA~~---~aPcivFiDE~ 219 (368)
T COG1223 197 ------------------------------------------------------RRIHELYERARK---AAPCIVFIDEL 219 (368)
T ss_pred ------------------------------------------------------HHHHHHHHHHHh---cCCeEEEehhh
Confidence 389999999998 99999999999
Q ss_pred hhhhc----------CChhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCccc
Q 001244 714 EKSLT----------GNNDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFS 781 (1116)
Q Consensus 714 e~~l~----------~~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~ 781 (1116)
|. |+ +..|++|+|.+.|+.+.. +||.|||||+++. ||+|
T Consensus 220 DA-iaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~----------------------LD~a------ 270 (368)
T COG1223 220 DA-IALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL----------------------LDPA------ 270 (368)
T ss_pred hh-hhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh----------------------cCHH------
Confidence 99 55 579999999999999965 9999999998876 8886
Q ss_pred ccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHh-hchhhhhcccchhhhhhhhhcCCCCCCCchhhhccc
Q 001244 782 RLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE-RDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKD 860 (1116)
Q Consensus 782 ~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle-~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~d 860 (1116)
++++|+++|+|.+|+||+++..++.-++ +||| .+.++..++.++
T Consensus 271 ---------------iRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp--------------------v~~~~~~~~~~t 315 (368)
T COG1223 271 ---------------IRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--------------------VDADLRYLAAKT 315 (368)
T ss_pred ---------------HHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc--------------------cccCHHHHHHHh
Confidence 8999999999999999999865543332 3444 667899999999
Q ss_pred cccchhh-HHHHHHHhhhccccccccCCCCCcccccccchhhhhHHH
Q 001244 861 QTLTTEG-VEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1116)
Q Consensus 861 k~Lsgad-IEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsd 906 (1116)
++|+|.| .+++++.|++.++. .++..+..++++.++..
T Consensus 316 ~g~SgRdikekvlK~aLh~Ai~--------ed~e~v~~edie~al~k 354 (368)
T COG1223 316 KGMSGRDIKEKVLKTALHRAIA--------EDREKVEREDIEKALKK 354 (368)
T ss_pred CCCCchhHHHHHHHHHHHHHHH--------hchhhhhHHHHHHHHHh
Confidence 9999999 56899999999887 56667778888877664
No 25
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6e-25 Score=244.18 Aligned_cols=231 Identities=24% Similarity=0.327 Sum_probs=189.1
Q ss_pred cccccccccccccchhHHHHHHhhhhhhcccccccc-ccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 448 ~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k-~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
.-+|||++.... |....-|-++.=..|+|++.+. -+- -.++.|||||||| +++++||||.||+.+|.++=+=
T Consensus 145 ~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEELGI---DPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred CCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEec
Confidence 357889988888 8888889999999999999863 332 3468899999999 8999999999999999998654
Q ss_pred cccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCcee
Q 001244 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1116)
Q Consensus 527 s~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 606 (1116)
.+.|. + |
T Consensus 218 gSElV------------------------------------------------------q-------------------K 224 (406)
T COG1222 218 GSELV------------------------------------------------------Q-------------------K 224 (406)
T ss_pred cHHHH------------------------------------------------------H-------------------H
Confidence 32111 1 8
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhh
Q 001244 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1116)
Q Consensus 607 ~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~ 686 (1116)
|+|.++
T Consensus 225 YiGEGa-------------------------------------------------------------------------- 230 (406)
T COG1222 225 YIGEGA-------------------------------------------------------------------------- 230 (406)
T ss_pred Hhccch--------------------------------------------------------------------------
Confidence 998744
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcchhhhhc---------C---ChhhHHHHHHHHhcC--CCCEEEEeeccCCCcccc
Q 001244 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLT---------G---NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKE 752 (1116)
Q Consensus 687 ~~~i~~L~evl~~esk~~P~ILfidDie~~l~---------~---~~e~~~~lk~~Le~L--~g~VviIgS~~~~d~~~~ 752 (1116)
+++.+||+++.+ +.|+||||||||. |+ + .++..--|.+.|+.+ .++|-||.|||++|.
T Consensus 231 -RlVRelF~lAre---kaPsIIFiDEIDA-Ig~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~--- 302 (406)
T COG1222 231 -RLVRELFELARE---KAPSIIFIDEIDA-IGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI--- 302 (406)
T ss_pred -HHHHHHHHHHhh---cCCeEEEEechhh-hhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc---
Confidence 289999999999 9999999999999 66 2 345555566667776 359999999999887
Q ss_pred cCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhh
Q 001244 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1116)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdl 830 (1116)
||| |+|| ||++.+|+|+|+.
T Consensus 303 -------------------LDP---------------------------------------ALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 303 -------------------LDP---------------------------------------ALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred -------------------cCh---------------------------------------hhcCCCcccceeecCCCCH
Confidence 777 6788 9999999999999
Q ss_pred hcccchhhhhhh-hhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHH
Q 001244 831 KGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1116)
Q Consensus 831 k~R~nIl~Iht~-l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq 908 (1116)
.+|.+|++|||. |.-. +++||+.|+..+.+++|++|..||.+|=.+|+. +.+..+..+++..+++...
T Consensus 325 ~gR~~Il~IHtrkM~l~--~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR--------~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 325 EGRAEILKIHTRKMNLA--DDVDLELLARLTEGFSGADLKAICTEAGMFAIR--------ERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHhhhccCc--cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHH--------hccCeecHHHHHHHHHHHH
Confidence 999999999996 5422 789999999999999999999999999999997 4455666666666655544
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.91 E-value=1.7e-24 Score=256.33 Aligned_cols=171 Identities=35% Similarity=0.626 Sum_probs=151.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe----------e
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 1012 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p----------f 1012 (1116)
.+.++|++|+|++.+++.+++.+.+++.++++|...++ .+++++|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34789999999999999999999999999999998875 456899999999999999999999998543 6
Q ss_pred eEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCC
Q 001244 1013 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1116)
Q Consensus 1013 I~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~ 1088 (1116)
+.+..+++.++|.|+.++.++.+|..|+.. .|+||||||||.+++.|.....+...++++++|+..|+++.. ..
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--LD 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--CC
Confidence 778888899999999999999999999864 699999999999998886644455567889999999999864 35
Q ss_pred CEEEEEEeCCCCCCcHHHHh--hcCCeEEC
Q 001244 1089 RVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1089 kVLVIaTTNrp~~LD~ALlR--RF~r~I~V 1116 (1116)
+++||+|||+++.||+||+| ||+++|+|
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~ 362 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRI 362 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEe
Confidence 79999999999999999999 99999875
No 27
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=249.50 Aligned_cols=171 Identities=43% Similarity=0.704 Sum_probs=153.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
.+.++|+||||++.++++|.+.+.+|+.+++.|...++ .+++++|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 44789999999999999999999999999999998885 45689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
+|.|+.++.++.+|..|+..+|+||||||||.+++.|... +......+++.+|+..++++.. ..+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 2233456788899999998754 35799999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.||++++| ||++.|+|
T Consensus 296 ~LDpAllR~GRfd~~I~~ 313 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEF 313 (398)
T ss_pred hCCHHHcCCCcccEEEEe
Confidence 99999999 99999875
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.1e-24 Score=235.53 Aligned_cols=169 Identities=40% Similarity=0.742 Sum_probs=152.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|+.++|+.++..++++.+..|+.++++|.+.++ +|++++|||||||||||.+|++||..+|++|+.+..+.+.++|
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 578999999999999999999999999999998774 5679999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchh--HHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~--~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~L 1102 (1116)
.|++.+.|++.|..|+.+.||||||||||.+.|++++.+.. ...++.+-+|+.+|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 99999999999999999999999999999999998765432 2445666678888888754 5789999999999999
Q ss_pred cHHHHh--hcCCeEEC
Q 001244 1103 DEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1103 D~ALlR--RF~r~I~V 1116 (1116)
|++|+| |+++.+.+
T Consensus 285 dpaLlRpGRldrk~~i 300 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEI 300 (388)
T ss_pred chhhcCCccccceecc
Confidence 999999 99998764
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.2e-24 Score=254.18 Aligned_cols=170 Identities=42% Similarity=0.655 Sum_probs=153.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
...++|.|+.|.+++++++.+.|.. ++.|..|...|. +-++|+||+||||||||+||+|+|.+.++||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 3478999999999999999999984 888988888775 66699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC--CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~--~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
.|+|-....+|.+|..|++++||||||||||.+...|.. ++.+......+|++|++|||+.. +..|+|||+||||+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCcc
Confidence 999999999999999999999999999999999866642 23444556789999999999973 57899999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.||+||+| ||+++|.|
T Consensus 300 VlD~ALlRpgRFDRqI~V 317 (596)
T COG0465 300 VLDPALLRPGRFDRQILV 317 (596)
T ss_pred cchHhhcCCCCcceeeec
Confidence 99999999 99999976
No 30
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.91 E-value=4.1e-23 Score=255.03 Aligned_cols=334 Identities=19% Similarity=0.257 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcchhhhhc------CChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCcee
Q 001244 688 LAINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLF 761 (1116)
Q Consensus 688 ~~i~~L~evl~~esk~~P~ILfidDie~~l~------~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~ 761 (1116)
..++.+++.+.. .++.||||||||.++. ++.++.|.|+..|. .|.+.|||++|..+.
T Consensus 265 ~rl~~l~~~l~~---~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~------------ 327 (758)
T PRK11034 265 KRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF------------ 327 (758)
T ss_pred HHHHHHHHHHHh---cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHH------------
Confidence 356666665554 7899999999999764 35788899999998 789999999994321
Q ss_pred eccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhh
Q 001244 762 TKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRS 841 (1116)
Q Consensus 762 ~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht 841 (1116)
++..+ .+..+.++| ++|.|++|+.++++..+.. .+..+...|.
T Consensus 328 -------------------~~~~~-------~D~AL~rRF-q~I~v~ePs~~~~~~IL~~----------~~~~ye~~h~ 370 (758)
T PRK11034 328 -------------------SNIFE-------KDRALARRF-QKIDITEPSIEETVQIING----------LKPKYEAHHD 370 (758)
T ss_pred -------------------HHHhh-------ccHHHHhhC-cEEEeCCCCHHHHHHHHHH----------HHHHhhhccC
Confidence 11101 123467789 5899999999999765442 1122222332
Q ss_pred h-hhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhhhhh
Q 001244 842 V-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKK 919 (1116)
Q Consensus 842 ~-l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~L~~ 919 (1116)
+ +.+..+ .+++|..-++.++.+++..|+-+...++...+.. .. ..+..++.+++...+..+-..+...
T Consensus 371 v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~---~~--~~~~~v~~~~i~~v~~~~tgip~~~----- 440 (758)
T PRK11034 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMP---VS--KRKKTVNVADIESVVARIARIPEKS----- 440 (758)
T ss_pred CCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCc---cc--ccccccChhhHHHHHHHHhCCChhh-----
Confidence 2 222222 4556677777888888888888877766554431 11 1122355566666555554332211
Q ss_pred hhhhccChhHHHHHH-hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchH
Q 001244 920 SLKDVVTENEFEKKL-LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKT 998 (1116)
Q Consensus 920 ~lk~~v~~~e~e~~l-l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT 998 (1116)
+..++.+... +...+ -..+.|++++++.|.+.+..... . +.. -.+|...+||+||||||||
T Consensus 441 -----~~~~~~~~l~~l~~~L--------~~~ViGQ~~ai~~l~~~i~~~~~--g-l~~--~~kp~~~~Lf~GP~GvGKT 502 (758)
T PRK11034 441 -----VSQSDRDTLKNLGDRL--------KMLVFGQDKAIEALTEAIKMSRA--G-LGH--EHKPVGSFLFAGPTGVGKT 502 (758)
T ss_pred -----hhhhHHHHHHHHHHHh--------cceEeCcHHHHHHHHHHHHHHhc--c-ccC--CCCCcceEEEECCCCCCHH
Confidence 1111111100 01111 13478999999999988864211 0 001 1345568999999999999
Q ss_pred HHHHHHHHHhCCeeeEEecccccc-----ccccchHHHH-----HHHHHHHhcCCCeEEEEccccccccCCCCCchhHHH
Q 001244 999 MLAKAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAM 1068 (1116)
Q Consensus 999 ~LArAIA~elg~pfI~Is~seL~s-----k~~GesEk~I-----r~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~l 1068 (1116)
++|+++|..++.+|+.++|+++.. .++|....++ ..+....++.+.+||||||||.+-
T Consensus 503 ~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------ 570 (758)
T PRK11034 503 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------ 570 (758)
T ss_pred HHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------
Confidence 999999999999999999987642 2333221111 223344456677999999999772
Q ss_pred HHHHHHHHHHhcCCCcC-------CCCCEEEEEEeCCC-------------------------CCCcHHHHhhcCCeEE
Q 001244 1069 RKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1069 r~IlneLL~~Ldgl~~k-------~~~kVLVIaTTNrp-------------------------~~LD~ALlRRF~r~I~ 1115 (1116)
..+.+.|+..|+...-. +-.+++||+|||.- ..+.|+|+.|++..|.
T Consensus 571 ~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~ 649 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIW 649 (758)
T ss_pred HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEE
Confidence 45677777777643211 12578899999922 1366889999987764
No 31
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.90 E-value=2.2e-23 Score=241.72 Aligned_cols=170 Identities=42% Similarity=0.728 Sum_probs=151.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
+.++|++|+|++++++.+.+.+.+|+.+++.|...++. ++++||||||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 47899999999999999999999999999999988754 55899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCch--hHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~--~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|.|+.++.++.+|..|+...|+||||||||.+++.+..... .....+.+.+|+..++++.. ..+++||+|||+++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 99999999999999999999999999999999877654321 23345667788888888754 457999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||++++| ||++.|+|
T Consensus 283 ld~allRpgRfd~~I~v 299 (389)
T PRK03992 283 LDPAILRPGRFDRIIEV 299 (389)
T ss_pred CCHHHcCCccCceEEEE
Confidence 9999998 99998875
No 32
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.90 E-value=2e-23 Score=235.37 Aligned_cols=134 Identities=21% Similarity=0.253 Sum_probs=116.1
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhc-----CCCeEEEEcccccc
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSVVFVDEVDSM 1055 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k-----~sPsIIfIDEID~L 1055 (1116)
.+++.++|||||||||||++|++||+++|++|+.++.++|.++|+|++|+.++++|..|+. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 4677999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred ccCCCCCchhHHHHHH-HHHHHHHhcCCC----------cCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEE
Q 001244 1056 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRTC 1115 (1116)
Q Consensus 1056 lg~R~~~~~~~~lr~I-lneLL~~Ldgl~----------~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~ 1115 (1116)
++.|.. ......+++ ..+||.+||+.. .....+|+||+|||+|+.||++|+| ||++.+.
T Consensus 225 ~g~r~~-~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~ 296 (413)
T PLN00020 225 AGRFGT-TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (413)
T ss_pred CCCCCC-CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeC
Confidence 998864 233333444 479999988742 1235689999999999999999999 9998764
No 33
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.90 E-value=1.1e-22 Score=252.70 Aligned_cols=333 Identities=21% Similarity=0.241 Sum_probs=203.7
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhc------CChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceee
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFT 762 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~------~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~ 762 (1116)
.+..+++.+.. ..|+||||||+|.++. +..+..+.|++.|+ .|.+.|||+||..+.
T Consensus 262 ~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~------------- 323 (731)
T TIGR02639 262 RLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY------------- 323 (731)
T ss_pred HHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH-------------
Confidence 45555555443 6799999999999764 23678899999998 799999999994221
Q ss_pred ccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhh
Q 001244 763 KFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV 842 (1116)
Q Consensus 763 ~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~ 842 (1116)
.... +....+.++|. .|.|++|+.++++..++..... +...|.+
T Consensus 324 ------------------~~~~-------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~----------~e~~~~v 367 (731)
T TIGR02639 324 ------------------KNHF-------EKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK----------YEEFHHV 367 (731)
T ss_pred ------------------HHHh-------hhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH----------HHhccCc
Confidence 1000 11234777885 8999999999998666533222 1122211
Q ss_pred -hhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhhhhhh
Q 001244 843 -LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKS 920 (1116)
Q Consensus 843 -l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~L~~~ 920 (1116)
+.+..+ .++.|..-++.++.+++..|+-+...+....+.... ..+..++.+++...+..+...+...
T Consensus 368 ~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~-----~~~~~v~~~~i~~~i~~~tgiP~~~------ 436 (731)
T TIGR02639 368 KYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA-----KKKANVSVKDIENVVAKMAHIPVKT------ 436 (731)
T ss_pred ccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc-----ccccccCHHHHHHHHHHHhCCChhh------
Confidence 222222 445556666677777877777666544433332110 1233466666666666554332110
Q ss_pred hhhccChhHHHHHH-hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHH
Q 001244 921 LKDVVTENEFEKKL-LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 999 (1116)
Q Consensus 921 lk~~v~~~e~e~~l-l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~ 999 (1116)
+..++.++.. +...+ -..+.|++++++.+.+.+..... .+.. ..+|...+||+||+|||||+
T Consensus 437 ----~~~~~~~~l~~l~~~l--------~~~v~GQ~~ai~~l~~~i~~~~~---g~~~--~~~p~~~~lf~Gp~GvGKT~ 499 (731)
T TIGR02639 437 ----VSVDDREKLKNLEKNL--------KAKIFGQDEAIDSLVSSIKRSRA---GLGN--PNKPVGSFLFTGPTGVGKTE 499 (731)
T ss_pred ----hhhHHHHHHHHHHHHH--------hcceeCcHHHHHHHHHHHHHHhc---CCCC--CCCCceeEEEECCCCccHHH
Confidence 1111111110 00001 13577999999999887763210 0111 13455568999999999999
Q ss_pred HHHHHHHHhCCeeeEEeccccccc-----cccchHH-----HHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHH
Q 001244 1000 LAKAVATEAGANFINISMSSITSK-----WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMR 1069 (1116)
Q Consensus 1000 LArAIA~elg~pfI~Is~seL~sk-----~~GesEk-----~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr 1069 (1116)
||++||+.++.+|+.++++++... ++|.... ....+....+..+.+||||||||.+- .
T Consensus 500 lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~------------~ 567 (731)
T TIGR02639 500 LAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH------------P 567 (731)
T ss_pred HHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC------------H
Confidence 999999999999999999886431 2222111 12234455566778999999999772 3
Q ss_pred HHHHHHHHHhcCCCcC-------CCCCEEEEEEeCCCC-------------------------CCcHHHHhhcCCeEE
Q 001244 1070 KMKNEFMVNWDGLRTK-------DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1070 ~IlneLL~~Ldgl~~k-------~~~kVLVIaTTNrp~-------------------------~LD~ALlRRF~r~I~ 1115 (1116)
.+.+.|+..|+...-. +-.+++||+|||... .+.|+|+.||+..|.
T Consensus 568 ~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~ 645 (731)
T TIGR02639 568 DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIH 645 (731)
T ss_pred HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEE
Confidence 5667777777654221 234688999998631 256788889987664
No 34
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.89 E-value=9.1e-23 Score=243.27 Aligned_cols=172 Identities=42% Similarity=0.650 Sum_probs=151.4
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc
Q 001244 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1116)
Q Consensus 941 ~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL 1020 (1116)
...+.++|+|++|++++++++.+.+.+ +++++.|...+. .+++++||+||||||||++|++||.+++.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 335588999999999999999998875 788888887664 456899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC
Q 001244 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1116)
Q Consensus 1021 ~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr 1098 (1116)
...+.|..++.++.+|..|+..+|+||||||||.+...+... +.+.....++++|+..|+++.. ..+++||+|||+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCC
Confidence 999999999999999999999999999999999998776542 2234456888999999999854 457999999999
Q ss_pred CCCCcHHHHh--hcCCeEEC
Q 001244 1099 PFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1099 p~~LD~ALlR--RF~r~I~V 1116 (1116)
++.||++++| ||++.|+|
T Consensus 203 ~~~ld~al~r~gRfd~~i~i 222 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVV 222 (495)
T ss_pred hhhcCHHHhcCCcceEEEEc
Confidence 9999999999 99999875
No 35
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.88 E-value=8.2e-23 Score=238.92 Aligned_cols=169 Identities=40% Similarity=0.689 Sum_probs=150.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|+||+|++.++++|.+++.+++.++++|...++. +++++|||||||||||++|++||++++.+|+.+..+++..+|
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 6799999999999999999999999999999988854 568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~L 1102 (1116)
.|+.+..++.+|..|+...|+||||||||.++..|... +......+++.+|+..++++.. ..++.||+|||+++.|
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIESL 335 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHHh
Confidence 99999999999999999999999999999998776432 2223345667789999998754 4579999999999999
Q ss_pred cHHHHh--hcCCeEEC
Q 001244 1103 DEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1103 D~ALlR--RF~r~I~V 1116 (1116)
|++++| ||++.|+|
T Consensus 336 DpaLlRpGRfd~~I~~ 351 (438)
T PTZ00361 336 DPALIRPGRIDRKIEF 351 (438)
T ss_pred hHHhccCCeeEEEEEe
Confidence 999998 99999875
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.6e-23 Score=252.78 Aligned_cols=170 Identities=38% Similarity=0.658 Sum_probs=154.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEec
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISM 1017 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~ 1017 (1116)
+..+.|+++||++.++..|++.|+.|+.||+.|...++. |++|+||+||||||||.+|+|+|..+ .+.|+.-+.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 447899999999999999999999999999999988854 56999999999999999999999988 577888888
Q ss_pred cccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC
Q 001244 1018 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1116)
Q Consensus 1018 seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN 1097 (1116)
++.+++|+|+.|+.++.+|+.|++.+|+|||+||||.|.+.|.... ...+..|+.+||.+|+|+.. +.+|+||||||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGlds--RgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDS--RGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCC--CCceEEEcccC
Confidence 9999999999999999999999999999999999999998886633 23567899999999999975 67899999999
Q ss_pred CCCCCcHHHHh--hcCCeEEC
Q 001244 1098 RPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1098 rp~~LD~ALlR--RF~r~I~V 1116 (1116)
|++.+|+|++| ||++.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f 435 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYF 435 (1080)
T ss_pred CccccchhhcCCcccceeEee
Confidence 99999999999 99998874
No 37
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.8e-22 Score=223.07 Aligned_cols=230 Identities=20% Similarity=0.334 Sum_probs=186.5
Q ss_pred HHHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHH
Q 001244 434 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 513 (1116)
Q Consensus 434 ~~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKA 513 (1116)
-|+.-+...||.+++|.|+|++.--. |.+++.|-+.+-..|++++++++ ..|...++.|||+|||| ++++|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~-g~Ll~p~kGiLL~GPpG--~GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAK-GKLLRPPKGILLYGPPG--TGKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhcc-cccccCCccceecCCCC--chHHHHHHH
Confidence 36667788999999999999999999 99999999999999999999884 56666999999999999 999999999
Q ss_pred HHhhcCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccc
Q 001244 514 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 593 (1116)
Q Consensus 514 LA~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 593 (1116)
+|++.|+.+.-|+.+.+-+
T Consensus 147 ~Akeaga~fInv~~s~lt~------------------------------------------------------------- 165 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTS------------------------------------------------------------- 165 (386)
T ss_pred HHHHcCCCcceeeccccch-------------------------------------------------------------
Confidence 9999999998887654433
Q ss_pred cCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccc
Q 001244 594 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 673 (1116)
Q Consensus 594 ~~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~ 673 (1116)
T Consensus 166 -------------------------------------------------------------------------------- 165 (386)
T KOG0737|consen 166 -------------------------------------------------------------------------------- 165 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC----ChhhHHHHHHHH----hcCC----CCEEEE
Q 001244 674 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGALKSKL----ENLP----SNVVVI 741 (1116)
Q Consensus 674 ~~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~----~~e~~~~lk~~L----e~L~----g~VviI 741 (1116)
+|=.+..-++.++|-++.. .+|+||||||||.+|+. .-|+....+..| ++|. ..|+|+
T Consensus 166 -------KWfgE~eKlv~AvFslAsK---l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 166 -------KWFGEAQKLVKAVFSLASK---LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred -------hhHHHHHHHHHHHHhhhhh---cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 2223333466777777764 99999999999998872 345555555555 4442 269999
Q ss_pred eeccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHH
Q 001244 742 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 821 (1116)
Q Consensus 742 gS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~ 821 (1116)
||||+| .|+ |||.+||+.+
T Consensus 236 gATNRP------------------------------~Dl-------------------------------DeAiiRR~p~ 254 (386)
T KOG0737|consen 236 GATNRP------------------------------FDL-------------------------------DEAIIRRLPR 254 (386)
T ss_pred eCCCCC------------------------------ccH-------------------------------HHHHHHhCcc
Confidence 999954 333 6788888888
Q ss_pred HHhhchhhhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccc
Q 001244 822 QLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1116)
Q Consensus 822 qle~~Lpdlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r 882 (1116)
.|.+++|+...|..|+++ ++....+ ..+|+.+++..|.||+|.||..+|+.|+++.+..
T Consensus 255 rf~V~lP~~~qR~kILkv--iLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 255 RFHVGLPDAEQRRKILKV--ILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred eeeeCCCchhhHHHHHHH--HhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 888888887777777666 3666677 8889999999999999999999999999887653
No 38
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.8e-22 Score=221.43 Aligned_cols=249 Identities=20% Similarity=0.256 Sum_probs=198.2
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
++.+|.||+.=-. ++.|.+|-+|+...+.-++|++..+ .-=+.|||.|||| ++++|||||+|-+.+..+..|-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~Gir---rPWkgvLm~GPPG--TGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKGIR---RPWKGVLMVGPPG--TGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhhcc---cccceeeeeCCCC--CcHHHHHHHHHHhhcCeEEEec
Confidence 4677999998777 9999999999999999888877655 4568999999999 8999999999999997766654
Q ss_pred cccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCcee
Q 001244 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1116)
Q Consensus 527 s~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 606 (1116)
|+.|
T Consensus 278 sstl---------------------------------------------------------------------------- 281 (491)
T KOG0738|consen 278 SSTL---------------------------------------------------------------------------- 281 (491)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 4222
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhh
Q 001244 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1116)
Q Consensus 607 ~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~ 686 (1116)
.|+|-++.
T Consensus 282 ------------------------------------------------------------------------tSKwRGeS 289 (491)
T KOG0738|consen 282 ------------------------------------------------------------------------TSKWRGES 289 (491)
T ss_pred ------------------------------------------------------------------------hhhhccch
Confidence 23455566
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcchhhhhc--C---ChhhHHHHHHH----HhcCCC---C---EEEEeeccCCCccc
Q 001244 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLT--G---NNDAYGALKSK----LENLPS---N---VVVIGSHTQLDSRK 751 (1116)
Q Consensus 687 ~~~i~~L~evl~~esk~~P~ILfidDie~~l~--~---~~e~~~~lk~~----Le~L~g---~---VviIgS~~~~d~~~ 751 (1116)
+.++.-||+++.. ..|.+|||||||.+.. | --|....||++ |+.+.+ + |.|++|||
T Consensus 290 EKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------ 360 (491)
T KOG0738|consen 290 EKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------ 360 (491)
T ss_pred HHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC------
Confidence 7789999999887 9999999999999444 2 12333344444 455543 5 88889999
Q ss_pred ccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
||+|+ |||++||||+.+++|||+.+
T Consensus 361 ------------------------~PWdi-------------------------------DEAlrRRlEKRIyIPLP~~~ 385 (491)
T KOG0738|consen 361 ------------------------FPWDI-------------------------------DEALRRRLEKRIYIPLPDAE 385 (491)
T ss_pred ------------------------CCcch-------------------------------HHHHHHHHhhheeeeCCCHH
Confidence 88888 88999999999999999999
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhh--hhHHHHH
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQ 908 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLk--vglsdFq 908 (1116)
+|..+++|- |+...+ +.++|+.|+..+.+|+|+||.-+|+.|..+++.|+...+....-..++.|.++ +...+|.
T Consensus 386 ~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe 463 (491)
T KOG0738|consen 386 ARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFE 463 (491)
T ss_pred HHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHH
Confidence 999998885 666666 78899999999999999999999999999999988776655555556667666 6677777
Q ss_pred hhhhhhhh
Q 001244 909 GIQSESKS 916 (1116)
Q Consensus 909 ~alne~K~ 916 (1116)
.++...++
T Consensus 464 ~Al~~v~p 471 (491)
T KOG0738|consen 464 EALRKVRP 471 (491)
T ss_pred HHHHHcCc
Confidence 76655443
No 39
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=230.57 Aligned_cols=166 Identities=42% Similarity=0.695 Sum_probs=154.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++ +++||.......+++.+.+|++++.+|...++ ++++++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 456 78999999999999999999999999998885 5669999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCC-CeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc
Q 001244 1025 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~s-PsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD 1103 (1116)
.|+++++++..|+.|.+++ |+||||||||.+.++|..... ..+++..+++.+|+++.. ..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876443 678999999999999864 57899999999999999
Q ss_pred HHHHh-hcCCeEEC
Q 001244 1104 EAVVR-RLPRRTCV 1116 (1116)
Q Consensus 1104 ~ALlR-RF~r~I~V 1116 (1116)
++++| ||++.+.|
T Consensus 335 ~alRRgRfd~ev~I 348 (693)
T KOG0730|consen 335 PALRRGRFDREVEI 348 (693)
T ss_pred hhhhcCCCcceeee
Confidence 99999 99999875
No 40
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.86 E-value=2.5e-21 Score=222.54 Aligned_cols=170 Identities=43% Similarity=0.744 Sum_probs=148.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
+.++|++|+|++++++.|.+++.+++.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+...++...
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 47899999999999999999999999999999988754 55899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCc--hhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~--~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|+....++.+|..++...|+||||||||.+...+.... ......+.+.+++..++++.. ..+++||+|||+++.
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPDI 273 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987654322 122345667788888887643 357999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||++++| ||++.|+|
T Consensus 274 ld~al~r~grfd~~i~v 290 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEV 290 (364)
T ss_pred CChhhcCcccCceEEEe
Confidence 9999998 99988864
No 41
>CHL00176 ftsH cell division protein; Validated
Probab=99.85 E-value=4.8e-21 Score=233.25 Aligned_cols=170 Identities=40% Similarity=0.646 Sum_probs=148.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
+..++|+|++|++++++++.+.+.. ++.++.|...+. ..++++||+||||||||+||+++|.+++.+|+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3468999999999999999998765 778888877664 45689999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC--CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~--~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
.+.|.....++.+|..|+...|+||||||||.+...|.. .+.+.....++++|+..++++.. +.+++||+|||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888889999999999999999999999999866543 22344556788999999999754 46899999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.||++++| ||++.|.|
T Consensus 333 ~LD~ALlRpGRFd~~I~v 350 (638)
T CHL00176 333 ILDAALLRPGRFDRQITV 350 (638)
T ss_pred hhhhhhhccccCceEEEE
Confidence 99999999 99998864
No 42
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.5e-21 Score=233.31 Aligned_cols=333 Identities=21% Similarity=0.288 Sum_probs=217.4
Q ss_pred HHHHHHHHhhcCCCCeEEEEcchhhhhc-----C-ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeecc
Q 001244 691 NELFEVALNESKSSPLIVFVKDIEKSLT-----G-NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKF 764 (1116)
Q Consensus 691 ~~L~evl~~esk~~P~ILfidDie~~l~-----~-~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~ 764 (1116)
+.|..|+.+..+..++||||||||++++ | ..++-|.||++|. +|.+-||||||.
T Consensus 249 eRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~------------------ 308 (786)
T COG0542 249 ERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTL------------------ 308 (786)
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccH------------------
Confidence 3455566665556699999999999887 2 3889999999999 999999999993
Q ss_pred CCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhh-h
Q 001244 765 GSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV-L 843 (1116)
Q Consensus 765 ~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~-l 843 (1116)
+.|++..+++..+ .++| .+|.+..|..|..+..+. ..+..+...|.+ +
T Consensus 309 -------------~EYRk~iEKD~AL-------~RRF-Q~V~V~EPs~e~ti~ILr----------Glk~~yE~hH~V~i 357 (786)
T COG0542 309 -------------DEYRKYIEKDAAL-------ERRF-QKVLVDEPSVEDTIAILR----------GLKERYEAHHGVRI 357 (786)
T ss_pred -------------HHHHHHhhhchHH-------HhcC-ceeeCCCCCHHHHHHHHH----------HHHHHHHHccCcee
Confidence 3455555554443 3344 678999999999874433 445566667776 7
Q ss_pred hcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH--Hh--------hhh
Q 001244 844 SRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL--QG--------IQS 912 (1116)
Q Consensus 844 ~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF--q~--------aln 912 (1116)
.+..+ .++.|+.-++.++.|+...|+-|...++...+... .+..-+ .+..+-.+...+.. .. ...
T Consensus 358 ~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~---~~~~~~~~l~~e~~~~~~e~~~~~k~~~~ 433 (786)
T COG0542 358 TDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELD---ELERELAQLEIEKEALEREQDEKEKKLID 433 (786)
T ss_pred cHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchh---HHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77777 88899999999999999999999999988877644 221000 00000000000000 00 000
Q ss_pred hhhhhh--------hhhhhccChhHHHHHHhc-CCCCCCCC------------CCCcccccCcHHHHHHHHHHHHccccC
Q 001244 913 ESKSLK--------KSLKDVVTENEFEKKLLA-DVIPPSDI------------GVTFDDIGALENVKDTLKELVMLPLQR 971 (1116)
Q Consensus 913 e~K~L~--------~~lk~~v~~~e~e~~ll~-~iIp~~e~------------~vtfddIgGldevk~~L~e~V~lpl~~ 971 (1116)
+...++ ..+..-+..++....+.. .-||.... ..--..+.|++++...+.++|....
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraR-- 511 (786)
T COG0542 434 EIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRAR-- 511 (786)
T ss_pred HHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHh--
Confidence 000000 000000112222222211 11222210 1112458999999999998886421
Q ss_pred hhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEeccccccc------------cccchHHHHHHHH
Q 001244 972 PELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK------------WFGEGEKYVKAVF 1036 (1116)
Q Consensus 972 pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~seL~sk------------~~GesEk~Ir~lF 1036 (1116)
-.+. ...+|...+||.||+|+|||.||+++|..+. -.++++||++++.+ |+|..+. ..+-
T Consensus 512 -aGL~--dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG--G~LT 586 (786)
T COG0542 512 -AGLG--DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG--GQLT 586 (786)
T ss_pred -cCCC--CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc--cchh
Confidence 1111 1256777899999999999999999999994 89999999998543 5554442 3455
Q ss_pred HHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCC-------CCEEEEEEeC
Q 001244 1037 SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK-------ERVLVLAATN 1097 (1116)
Q Consensus 1037 ~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~-------~kVLVIaTTN 1097 (1116)
+..++.+.|||+||||| .++..|+|.|++.||...-+++ .+.+||+|||
T Consensus 587 EaVRr~PySViLlDEIE------------KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 587 EAVRRKPYSVILLDEIE------------KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred HhhhcCCCeEEEechhh------------hcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 66677788999999998 3457899999999986554443 3689999998
No 43
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.84 E-value=9.6e-20 Score=228.75 Aligned_cols=338 Identities=20% Similarity=0.265 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhc-----CChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeec
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTK 763 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~-----~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~ 763 (1116)
.|..+++-+.. ..+++||||||+|.++. ++++..|.|++.|+ .|.+.|||+||..+.++
T Consensus 267 ~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~------------ 330 (852)
T TIGR03345 267 RLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKK------------ 330 (852)
T ss_pred HHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhh------------
Confidence 44555544432 15799999999999764 56788889999998 79999999999422100
Q ss_pred cCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhh-
Q 001244 764 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV- 842 (1116)
Q Consensus 764 ~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~- 842 (1116)
.--+|+ .+.++| +.|.|++|+.++.+..+. .+.. .+...|.+
T Consensus 331 -----~~~~d~---------------------AL~rRf-~~i~v~eps~~~~~~iL~-~~~~---------~~e~~~~v~ 373 (852)
T TIGR03345 331 -----YFEKDP---------------------ALTRRF-QVVKVEEPDEETAIRMLR-GLAP---------VLEKHHGVL 373 (852)
T ss_pred -----hhhccH---------------------HHHHhC-eEEEeCCCCHHHHHHHHH-HHHH---------hhhhcCCCe
Confidence 001233 377788 589999999999875432 1111 11111222
Q ss_pred hhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCC-CC--ccc---ccccchh--------hh--hHH
Q 001244 843 LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG-KD--AKL---KISTESI--------MY--GLN 905 (1116)
Q Consensus 843 l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~-~d--~KL---vIS~ESL--------kv--gls 905 (1116)
+.+..+ .++.|..-++.++.+++..|+-|...++...+.+...+.. .+ .++ ......+ .. ...
T Consensus 374 i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (852)
T TIGR03345 374 ILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLA 453 (852)
T ss_pred eCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHH
Confidence 223333 4456666778888899999998888777766653222110 00 000 0000000 00 000
Q ss_pred HHH----hhhhhhhhhhhhh----------------------------------------------------hhccChhH
Q 001244 906 ILQ----GIQSESKSLKKSL----------------------------------------------------KDVVTENE 929 (1116)
Q Consensus 906 dFq----~alne~K~L~~~l----------------------------------------------------k~~v~~~e 929 (1116)
.++ ....+...+...+ ...+..++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 533 (852)
T TIGR03345 454 ELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQA 533 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHH
Confidence 000 0000000000000 00111222
Q ss_pred HHHHHh-cCCCCCCCCC-----------CC-cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCc
Q 001244 930 FEKKLL-ADVIPPSDIG-----------VT-FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 996 (1116)
Q Consensus 930 ~e~~ll-~~iIp~~e~~-----------vt-fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTG 996 (1116)
....+. -.-||..... .. -..+.|++.+++.+.+.+..... .+... .+|...+||+||+|+|
T Consensus 534 i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~---gl~~~--~~p~~~~lf~Gp~GvG 608 (852)
T TIGR03345 534 VAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARA---GLEDP--RKPLGVFLLVGPSGVG 608 (852)
T ss_pred HHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhc---CCCCC--CCCceEEEEECCCCCC
Confidence 222110 0112322110 01 14678999998888888764211 00011 3444458999999999
Q ss_pred hHHHHHHHHHHh---CCeeeEEeccccccc------------cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 997 KTMLAKAVATEA---GANFINISMSSITSK------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 997 KT~LArAIA~el---g~pfI~Is~seL~sk------------~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
||+||++||..+ .-.|+.++++++... |+|..+. ..+....++.+.+||+|||||.+
T Consensus 609 KT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka------ 680 (852)
T TIGR03345 609 KTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA------ 680 (852)
T ss_pred HHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc------
Confidence 999999999999 458899999876322 3333221 12344556678899999999855
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcCC-------CCCEEEEEEeCC
Q 001244 1062 PGEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNR 1098 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ldgl~~k~-------~~kVLVIaTTNr 1098 (1116)
...+++.|+..++...-.+ -.+.+||.|||.
T Consensus 681 ------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 681 ------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 1355666666665433111 257899999994
No 44
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=2.4e-20 Score=232.07 Aligned_cols=168 Identities=45% Similarity=0.792 Sum_probs=151.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|++|+|++++++.+.+.+.+++.++++|...++ .+++++|||||||||||+||++||++++.+|+.++++++.+++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 689999999999999999999999999999998875 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcH
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ 1104 (1116)
.|+.+..++.+|+.|....|+||||||||.+.+.+.... ....++++++|+..++++.. ..+++||+|||+++.||+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 999999999999999999999999999999987775422 23446788999999998853 468999999999999999
Q ss_pred HHHh--hcCCeEEC
Q 001244 1105 AVVR--RLPRRTCV 1116 (1116)
Q Consensus 1105 ALlR--RF~r~I~V 1116 (1116)
+++| ||++.|++
T Consensus 330 al~r~gRfd~~i~i 343 (733)
T TIGR01243 330 ALRRPGRFDREIVI 343 (733)
T ss_pred HHhCchhccEEEEe
Confidence 9998 99988764
No 45
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.83 E-value=2.6e-19 Score=225.14 Aligned_cols=333 Identities=19% Similarity=0.270 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhc-----CChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeec
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTK 763 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~-----~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~ 763 (1116)
.|..+++-+.. .+++||||||+|.++. +..++.+.|++.|. .|.+.|||++|..+.
T Consensus 259 rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey-------------- 319 (821)
T CHL00095 259 RLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEY-------------- 319 (821)
T ss_pred HHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHH--------------
Confidence 45555555533 6899999999999775 24567889999998 799999999994221
Q ss_pred cCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH-------HHHHHHhhchhhhhcccch
Q 001244 764 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-------DWKQQLERDVETLKGQSNI 836 (1116)
Q Consensus 764 ~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR-------Rfe~qle~~Lpdlk~R~nI 836 (1116)
+...+ ....+..+|. .|.+..|+.++... +|+.+....+++.
T Consensus 320 -----------------~~~ie-------~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~de------ 368 (821)
T CHL00095 320 -----------------RKHIE-------KDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDK------ 368 (821)
T ss_pred -----------------HHHHh-------cCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHH------
Confidence 11111 1124666774 68888898877633 2222222111110
Q ss_pred hhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCC-CCC--ccc---c------cccchhhhhH
Q 001244 837 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAP-GKD--AKL---K------ISTESIMYGL 904 (1116)
Q Consensus 837 l~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i-~~d--~KL---v------IS~ESLkvgl 904 (1116)
-+. ....|..-++.++.+++..|+-|...++...+.....+. ... .++ . +..++....
T Consensus 369 -al~--------~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 438 (821)
T CHL00095 369 -ALE--------AAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETA- 438 (821)
T ss_pred -HHH--------HHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHH-
Confidence 011 223445556677788888888887777766654321110 000 000 0 000000000
Q ss_pred HHHHh----hhhhhhhhhhhh---------hhccChhHHHHHHhc-CCCCCCCCC------------CCcccccCcHHHH
Q 001244 905 NILQG----IQSESKSLKKSL---------KDVVTENEFEKKLLA-DVIPPSDIG------------VTFDDIGALENVK 958 (1116)
Q Consensus 905 sdFq~----alne~K~L~~~l---------k~~v~~~e~e~~ll~-~iIp~~e~~------------vtfddIgGldevk 958 (1116)
..+.. ...+...+...+ ...+..++....+.. .-||..... .--..+.|+++++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai 518 (821)
T CHL00095 439 KQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAV 518 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHH
Confidence 00000 000000000000 012344444333321 123322110 0124588999999
Q ss_pred HHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-----ccccchHH
Q 001244 959 DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEK 1030 (1116)
Q Consensus 959 ~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-----k~~GesEk 1030 (1116)
+.+..++..... .+. ...+|...+||+||+|||||+||++||+.+ +.++++++++++.. +++|....
T Consensus 519 ~~l~~~i~~~~~---gl~--~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~g 593 (821)
T CHL00095 519 VAVSKAIRRARV---GLK--NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPG 593 (821)
T ss_pred HHHHHHHHHHhh---ccc--CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCc
Confidence 999888753211 001 114455678999999999999999999998 57899999987632 22222111
Q ss_pred H-----HHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCc-------CCCCCEEEEEEeCC
Q 001244 1031 Y-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNR 1098 (1116)
Q Consensus 1031 ~-----Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~-------k~~~kVLVIaTTNr 1098 (1116)
+ ...+....++.+.+||+|||||.+- ..+.+.|+..++...- -+-.+.+||+|||.
T Consensus 594 yvg~~~~~~l~~~~~~~p~~VvllDeieka~------------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 594 YVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred ccCcCccchHHHHHHhCCCeEEEECChhhCC------------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1 1345566667777999999999762 4566777777775321 12357899999984
No 46
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.82 E-value=1.9e-20 Score=238.99 Aligned_cols=129 Identities=22% Similarity=0.356 Sum_probs=107.4
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc------------------------------------
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------------ 1024 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~------------------------------------ 1024 (1116)
..|++||||+||||||||+||+|||.++++||+.|++++++.++
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 35779999999999999999999999999999999999988654
Q ss_pred -----ccchH--HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCc-CCCCCEEEEEEe
Q 001244 1025 -----FGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLVLAAT 1096 (1116)
Q Consensus 1025 -----~GesE--k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~-k~~~kVLVIaTT 1096 (1116)
.+..+ ..++.+|+.|++.+||||||||||.|...... ...+++|+.+|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 11222 24889999999999999999999999644211 1247889999998642 124679999999
Q ss_pred CCCCCCcHHHHh--hcCCeEEC
Q 001244 1097 NRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1097 Nrp~~LD~ALlR--RF~r~I~V 1116 (1116)
|+|+.|||||+| ||++.|+|
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~I 1801 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKI 1801 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEe
Confidence 999999999999 99999976
No 47
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.8e-20 Score=215.09 Aligned_cols=242 Identities=21% Similarity=0.320 Sum_probs=192.3
Q ss_pred HHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhc
Q 001244 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1116)
Q Consensus 439 l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f 518 (1116)
|...|.+-+.++|+|++-=.- |+.|.-|-+-+- +||.+. ||++-=--.++.|||.|||| ++++|||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 457788888899999998887 999999999876 677643 56665556789999999999 89999999999999
Q ss_pred CCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCccc
Q 001244 519 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 598 (1116)
Q Consensus 519 ~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 598 (1116)
+||+.-- .| || +
T Consensus 362 ~VPFF~~-----sG------------SE----------------------F----------------------------- 373 (752)
T KOG0734|consen 362 GVPFFYA-----SG------------SE----------------------F----------------------------- 373 (752)
T ss_pred CCCeEec-----cc------------cc----------------------h-----------------------------
Confidence 9997532 12 00 0
Q ss_pred ccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCccccccccccc
Q 001244 599 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 678 (1116)
Q Consensus 599 ~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d 678 (1116)
|- .|||-++
T Consensus 374 ----dE-m~VGvGA------------------------------------------------------------------ 382 (752)
T KOG0734|consen 374 ----DE-MFVGVGA------------------------------------------------------------------ 382 (752)
T ss_pred ----hh-hhhcccH------------------------------------------------------------------
Confidence 00 3555422
Q ss_pred CCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC---C------hhhHHHHHHHHhcCCC--CEEEEeeccCC
Q 001244 679 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG---N------NDAYGALKSKLENLPS--NVVVIGSHTQL 747 (1116)
Q Consensus 679 ~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~---~------~e~~~~lk~~Le~L~g--~VviIgS~~~~ 747 (1116)
+.+..||..+.. ..||||||||||. +++ . .+..|-|..+|+.+.. +|||||+||.|
T Consensus 383 ---------rRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfp 449 (752)
T KOG0734|consen 383 ---------RRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFP 449 (752)
T ss_pred ---------HHHHHHHHHHHh---cCCeEEEEechhh-hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCCh
Confidence 267888888877 9999999999999 773 1 3445677778888854 99999999955
Q ss_pred CcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhh
Q 001244 748 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 825 (1116)
Q Consensus 748 d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~ 825 (1116)
|. + |.+++| ||++|+-.
T Consensus 450 e~------------------------------L-------------------------------D~AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 450 EA------------------------------L-------------------------------DKALTRPGRFDRHVTV 468 (752)
T ss_pred hh------------------------------h-------------------------------hHHhcCCCccceeEec
Confidence 44 3 447777 99999999
Q ss_pred chhhhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhH
Q 001244 826 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGL 904 (1116)
Q Consensus 826 ~Lpdlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvgl 904 (1116)
|+||+.+|..|+++| |....+ +++|+.-||.-|.+|+|+|++.+|..|+.++-+ ++...++++.++.+-
T Consensus 469 p~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~--------dga~~VtM~~LE~ak 538 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV--------DGAEMVTMKHLEFAK 538 (752)
T ss_pred CCCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh--------cCcccccHHHHhhhh
Confidence 999999999999999 455555 789999999999999999999999999988876 666778888888776
Q ss_pred HHHHhh
Q 001244 905 NILQGI 910 (1116)
Q Consensus 905 sdFq~a 910 (1116)
+...+.
T Consensus 539 DrIlMG 544 (752)
T KOG0734|consen 539 DRILMG 544 (752)
T ss_pred hheeec
Confidence 665443
No 48
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.82 E-value=4.4e-19 Score=223.72 Aligned_cols=340 Identities=19% Similarity=0.247 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhc-----CChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeec
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTK 763 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~-----~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~ 763 (1116)
.+..+++.+.. ...|+||||||+|.++. ++.+..+.|+..|. .|.+.|||++|..+.
T Consensus 253 ~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~-------------- 314 (852)
T TIGR03346 253 RLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEY-------------- 314 (852)
T ss_pred HHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHH--------------
Confidence 45555554432 14799999999999764 34678899999887 789999999994322
Q ss_pred cCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhh-
Q 001244 764 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV- 842 (1116)
Q Consensus 764 ~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~- 842 (1116)
+.+.+ ....+.++| +.|.+..|+.++++..+... +..+...|.+
T Consensus 315 -----------------r~~~~-------~d~al~rRf-~~i~v~~p~~~~~~~iL~~~----------~~~~e~~~~v~ 359 (852)
T TIGR03346 315 -----------------RKYIE-------KDAALERRF-QPVFVDEPTVEDTISILRGL----------KERYEVHHGVR 359 (852)
T ss_pred -----------------HHHhh-------cCHHHHhcC-CEEEeCCCCHHHHHHHHHHH----------HHHhccccCCC
Confidence 11111 122477788 57999999999987644311 1111111221
Q ss_pred hhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCC-CCC--ccc--------cccc-------------
Q 001244 843 LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAP-GKD--AKL--------KIST------------- 897 (1116)
Q Consensus 843 l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i-~~d--~KL--------vIS~------------- 897 (1116)
+.+..+ .++.|..-++.++.|++..|+-|...++...+.....+. ... .++ ....
T Consensus 360 ~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (852)
T TIGR03346 360 ITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDL 439 (852)
T ss_pred CCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 222222 566777888888999998888887777655553221110 000 000 0000
Q ss_pred ----chhhhhHHHHHh-----------------hhh-------------------------------hhhhhhhh-----
Q 001244 898 ----ESIMYGLNILQG-----------------IQS-------------------------------ESKSLKKS----- 920 (1116)
Q Consensus 898 ----ESLkvglsdFq~-----------------aln-------------------------------e~K~L~~~----- 920 (1116)
+.++.....+.. ... +...+...
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (852)
T TIGR03346 440 EKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEET 519 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhcc
Confidence 000000000000 000 00000000
Q ss_pred ----hhhccChhHHHHHHhc-CCCCCCCC------------CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCC
Q 001244 921 ----LKDVVTENEFEKKLLA-DVIPPSDI------------GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKP 983 (1116)
Q Consensus 921 ----lk~~v~~~e~e~~ll~-~iIp~~e~------------~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p 983 (1116)
+...+..++....+.. .-||.... ..-...+.|++.+++.+.+.+..... .+.. ..+|
T Consensus 520 ~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~---gl~~--~~~p 594 (852)
T TIGR03346 520 KPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRA---GLSD--PNRP 594 (852)
T ss_pred ccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhc---cCCC--CCCC
Confidence 0011333444333321 11332210 01124688999999999888763210 0001 1345
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc-----cccchHHH-----HHHHHHHHhcCCCeEEEEc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-----VKAVFSLASKIAPSVVFVD 1050 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk-----~~GesEk~-----Ir~lF~~A~k~sPsIIfID 1050 (1116)
...+||+||+|||||++|++||..+ +.+|+.++++++... ++|....+ ...+....++.+.+|||||
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllD 674 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFD 674 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEe
Confidence 5679999999999999999999988 579999999876432 22211110 1234445566667899999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC-------CCCCEEEEEEeCC
Q 001244 1051 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNR 1098 (1116)
Q Consensus 1051 EID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k-------~~~kVLVIaTTNr 1098 (1116)
|||.+- ..+.+.|+..++...-. +-.+.+||+|||.
T Consensus 675 eieka~------------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 675 EVEKAH------------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred ccccCC------------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 999762 45566666666433211 1356889999997
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=1.5e-19 Score=175.34 Aligned_cols=128 Identities=38% Similarity=0.635 Sum_probs=115.3
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCC-CeEEEEccccccccCCCCCchh
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 1065 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~s-PsIIfIDEID~Llg~R~~~~~~ 1065 (1116)
|||+||||||||++|+++|+.++++|+.+++.++.+.+.+..++.+..+|..+++.. |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999998776 33445
Q ss_pred HHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHH-hhcCCeEEC
Q 001244 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRTCV 1116 (1116)
Q Consensus 1066 ~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALl-RRF~r~I~V 1116 (1116)
.....+++.|+..++..... ..+++||+|||.++.++++++ +||+++|.+
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence 56678889999999987653 467999999999999999999 999999874
No 50
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.4e-20 Score=211.87 Aligned_cols=175 Identities=29% Similarity=0.486 Sum_probs=141.8
Q ss_pred cCCCCCCCCCCCccc--ccCcHHHHHH-HHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-
Q 001244 936 ADVIPPSDIGVTFDD--IGALENVKDT-LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN- 1011 (1116)
Q Consensus 936 ~~iIp~~e~~vtfdd--IgGldevk~~-L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p- 1011 (1116)
+.+|.| ++.|++ |||++..... .+++...-+.-|+...+.|+ +..+|||||||||||||.+||.|.+.+++.
T Consensus 209 n~ii~P---df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNAre 284 (744)
T KOG0741|consen 209 NSIINP---DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNARE 284 (744)
T ss_pred ccccCC---CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCC
Confidence 345555 456665 6899876654 45556555666777777774 566999999999999999999999999653
Q ss_pred eeEEeccccccccccchHHHHHHHHHHHhc--------CCCeEEEEccccccccCCCCCc-hhHHHHHHHHHHHHHhcCC
Q 001244 1012 FINISMSSITSKWFGEGEKYVKAVFSLASK--------IAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL 1082 (1116)
Q Consensus 1012 fI~Is~seL~sk~~GesEk~Ir~lF~~A~k--------~sPsIIfIDEID~Llg~R~~~~-~~~~lr~IlneLL~~Ldgl 1082 (1116)
---++.++++++|+|++|.++|++|.+|.. +...||++||||.++..|++.+ .......++|+||..|||+
T Consensus 285 PKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV 364 (744)
T KOG0741|consen 285 PKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV 364 (744)
T ss_pred CcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH
Confidence 444789999999999999999999999953 3456999999999998887643 3567789999999999998
Q ss_pred CcCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEEC
Q 001244 1083 RTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1083 ~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~V 1116 (1116)
.. -.+|+|||.|||++.||+||+| ||..+.+|
T Consensus 365 eq--LNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 365 EQ--LNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred Hh--hhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 65 3579999999999999999999 99776653
No 51
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.80 E-value=1.9e-19 Score=220.67 Aligned_cols=171 Identities=40% Similarity=0.636 Sum_probs=147.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc
Q 001244 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1116)
Q Consensus 942 ~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~ 1021 (1116)
.....+|+++.|.+..++.+.+.+.+ +..+..|...+. ..++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34467899999999999999998876 555666655443 3457899999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC--CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1022 sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~--~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
..+.|.....++.+|..|+..+|+||||||||.+...|.. .+.+.....++++|+..|+++.. +.+++||||||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 9999999999999999999999999999999999877654 23344556789999999999864 5689999999999
Q ss_pred CCCcHHHHh--hcCCeEEC
Q 001244 1100 FDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1100 ~~LD~ALlR--RF~r~I~V 1116 (1116)
+.||++++| ||++.|+|
T Consensus 301 ~~lD~Al~RpgRfdr~i~v 319 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVV 319 (644)
T ss_pred hhcCHHHhCCcccceEEEc
Confidence 999999999 99999875
No 52
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.79 E-value=5.5e-18 Score=213.46 Aligned_cols=134 Identities=22% Similarity=0.294 Sum_probs=84.0
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc-
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk- 1023 (1116)
...+.|++.+++.+...+..... .... ..+|...+||+||+|||||++|++||..+ +.+|+.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~---gl~~--~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA---GLSD--PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh---cccC--CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 34678899888888887763210 0000 12344578999999999999999999987 568999999876432
Q ss_pred ----cccchHHH-----HHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------cCCC
Q 001244 1024 ----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDK 1087 (1116)
Q Consensus 1024 ----~~GesEk~-----Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~k~~ 1087 (1116)
.+|....+ ...+....+..+.+|||||||+.+- ..+++.|+..++... ..+-
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~------------~~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH------------PDVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC------------HHHHHHHHHHHhhCceecCCceEEee
Confidence 22211100 1122333344555899999999762 344555555554321 1123
Q ss_pred CCEEEEEEeCC
Q 001244 1088 ERVLVLAATNR 1098 (1116)
Q Consensus 1088 ~kVLVIaTTNr 1098 (1116)
.+.+||+|||.
T Consensus 710 rn~iiI~TSN~ 720 (857)
T PRK10865 710 RNTVVIMTSNL 720 (857)
T ss_pred cccEEEEeCCc
Confidence 45789999996
No 53
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.1e-19 Score=208.84 Aligned_cols=235 Identities=25% Similarity=0.307 Sum_probs=177.9
Q ss_pred HHHHHHHHHHhc----ccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHH
Q 001244 431 RRQAFKDSLQEG----ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIY 506 (1116)
Q Consensus 431 r~~~~k~~l~~~----vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Y 506 (1116)
..+-|++.|.+- .+.-+.-.++|++..-+ +..|..|.++.-.-+++++.. ..-.-..++.|||+|||| ++
T Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~~--~~~~~~~~~giLl~GpPG--tG 288 (494)
T COG0464 215 TEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPELF--RKLGLRPPKGVLLYGPPG--TG 288 (494)
T ss_pred cHHHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHHH--HhcCCCCCCeeEEECCCC--CC
Confidence 344566666653 44456667888887776 899999999999999998873 332333445999999999 99
Q ss_pred HHHHHHHHHhhcCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCC
Q 001244 507 QETLAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPK 586 (1116)
Q Consensus 507 qe~LaKALA~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~ 586 (1116)
++|||||+|++.+++++.+|..++.+
T Consensus 289 KT~lAkava~~~~~~fi~v~~~~l~s------------------------------------------------------ 314 (494)
T COG0464 289 KTLLAKAVALESRSRFISVKGSELLS------------------------------------------------------ 314 (494)
T ss_pred HHHHHHHHHhhCCCeEEEeeCHHHhc------------------------------------------------------
Confidence 99999999999999999999765544
Q ss_pred CcccccccCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCC
Q 001244 587 PEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDH 666 (1116)
Q Consensus 587 ~~~~~~~~~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~ 666 (1116)
+|+|.
T Consensus 315 -------------------k~vGe-------------------------------------------------------- 319 (494)
T COG0464 315 -------------------KWVGE-------------------------------------------------------- 319 (494)
T ss_pred -------------------cccch--------------------------------------------------------
Confidence 44443
Q ss_pred CcccccccccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcCCC--
Q 001244 667 GFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS-- 736 (1116)
Q Consensus 667 ~~~~~~~~~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~--------~e~~~~lk~~Le~L~g-- 736 (1116)
.+..|.++|+.+.. .+|+||||||+|+|+... .++.+.|...|+.+..
T Consensus 320 -------------------sek~ir~~F~~A~~---~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 320 -------------------SEKNIRELFEKARK---LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred -------------------HHHHHHHHHHHHHc---CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 33478888888876 999999999999977722 3789999999988755
Q ss_pred CEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHH
Q 001244 737 NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALL 816 (1116)
Q Consensus 737 ~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~L 816 (1116)
+|+|||++|++|. +|+ +++
T Consensus 378 ~v~vi~aTN~p~~----------------------ld~---------------------------------------a~l 396 (494)
T COG0464 378 GVLVIAATNRPDD----------------------LDP---------------------------------------ALL 396 (494)
T ss_pred ceEEEecCCCccc----------------------cCH---------------------------------------hhc
Confidence 9999999998776 555 444
Q ss_pred H--HHHHHHhhchhhhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 817 S--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 817 R--Rfe~qle~~Lpdlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
| ||++.+++++|+...|..|+++|+......+ .++|+..++..+.+|+|+||+.+|+.|...++...
T Consensus 397 R~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 397 RPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred ccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4 5555555555555555555555544222223 67899999999999999999999999999988744
No 54
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.2e-18 Score=203.58 Aligned_cols=263 Identities=21% Similarity=0.282 Sum_probs=200.1
Q ss_pred cchHHHHHHHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHH
Q 001244 427 LISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIY 506 (1116)
Q Consensus 427 ~~~~r~~~~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Y 506 (1116)
.+..+-...+.++-..|=-++==+|+||+.... |.+|..+.+..-..|+|+++. +++|-.-| .|||||||| ++
T Consensus 645 df~kals~~~~~fs~aiGAPKIPnV~WdDVGGL--eevK~eIldTIqlPL~hpeLf--ssglrkRS-GILLYGPPG--TG 717 (953)
T KOG0736|consen 645 DFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGL--EEVKTEILDTIQLPLKHPELF--SSGLRKRS-GILLYGPPG--TG 717 (953)
T ss_pred HHHHHHHHHHHhhhhhcCCCCCCccchhcccCH--HHHHHHHHHHhcCcccChhhh--hccccccc-eeEEECCCC--Cc
Confidence 455566677788888888888899999999999 999999999999999999984 45554333 499999999 89
Q ss_pred HHHHHHHHHhhcCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCC
Q 001244 507 QETLAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPK 586 (1116)
Q Consensus 507 qe~LaKALA~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~ 586 (1116)
++.||||.|-+|...+|-|..-.|.-
T Consensus 718 KTLlAKAVATEcsL~FlSVKGPELLN------------------------------------------------------ 743 (953)
T KOG0736|consen 718 KTLLAKAVATECSLNFLSVKGPELLN------------------------------------------------------ 743 (953)
T ss_pred hHHHHHHHHhhceeeEEeecCHHHHH------------------------------------------------------
Confidence 99999999999999998776533322
Q ss_pred CcccccccCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCC
Q 001244 587 PEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDH 666 (1116)
Q Consensus 587 ~~~~~~~~~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~ 666 (1116)
+|||.+-
T Consensus 744 -------------------MYVGqSE------------------------------------------------------ 750 (953)
T KOG0736|consen 744 -------------------MYVGQSE------------------------------------------------------ 750 (953)
T ss_pred -------------------HHhcchH------------------------------------------------------
Confidence 6777521
Q ss_pred CcccccccccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhc----------CC-hhhHHHHHHHHhcCC
Q 001244 667 GFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT----------GN-NDAYGALKSKLENLP 735 (1116)
Q Consensus 667 ~~~~~~~~~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~----------~~-~e~~~~lk~~Le~L~ 735 (1116)
--+++.||.+.+ ..||||||||+|. |+ |. .++++-|..+||+++
T Consensus 751 ---------------------~NVR~VFerAR~---A~PCVIFFDELDS-lAP~RG~sGDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 751 ---------------------ENVREVFERARS---AAPCVIFFDELDS-LAPNRGRSGDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred ---------------------HHHHHHHHHhhc---cCCeEEEeccccc-cCccCCCCCCccccHHHHHHHHHHHhhccc
Confidence 145677787777 8999999999999 87 22 678899999999997
Q ss_pred C----CEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCc
Q 001244 736 S----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQ 811 (1116)
Q Consensus 736 g----~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~ 811 (1116)
. .|.||||||+||- ||+
T Consensus 806 ~~~s~~VFViGATNRPDL----------------------LDp------------------------------------- 826 (953)
T KOG0736|consen 806 DSSSQDVFVIGATNRPDL----------------------LDP------------------------------------- 826 (953)
T ss_pred CCCCCceEEEecCCCccc----------------------cCh-------------------------------------
Confidence 4 9999999999886 766
Q ss_pred hHHHHH--HHHHHHhhchh-hhhcccchhhhhhhhhcCCC-CCCCchhhhcccc-ccchhhHHHHHHHhhhccccccccC
Q 001244 812 DEALLS--DWKQQLERDVE-TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQ-TLTTEGVEKIVGWALSHHFMHCSEA 886 (1116)
Q Consensus 812 DEa~LR--Rfe~qle~~Lp-dlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk-~LsgadIEkIV~sAaS~aL~r~~~~ 886 (1116)
++|| ||++.+|.+.+ +.+.+.+++.-.| ++..+ +++||.++|.+.. +|+|+|+-.||--|...|+.|.+..
T Consensus 827 --ALLRPGRFDKLvyvG~~~d~esk~~vL~AlT--rkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 827 --ALLRPGRFDKLVYVGPNEDAESKLRVLEALT--RKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred --hhcCCCccceeEEecCCccHHHHHHHHHHHH--HHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 5666 77777776544 3444555554444 33445 8899999998766 8999999999999999999987654
Q ss_pred CCCC--cccccccchhhhhHHHHHhhh
Q 001244 887 PGKD--AKLKISTESIMYGLNILQGIQ 911 (1116)
Q Consensus 887 i~~d--~KLvIS~ESLkvglsdFq~al 911 (1116)
+... ........++.+...+|.+..
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~ 929 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSA 929 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHH
Confidence 4211 112233445555566665443
No 55
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.3e-18 Score=187.28 Aligned_cols=226 Identities=21% Similarity=0.279 Sum_probs=179.8
Q ss_pred HHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHH
Q 001244 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1116)
Q Consensus 435 ~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKAL 514 (1116)
++..|...|| -|+=+|-|++.-.. |..|.+|-+|+...+|-+-++...+. -=+.|||+|||| +++-.||||.
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGkR~---PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGKRK---PWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCCCC---cceeEEEeCCCC--CcHHHHHHHH
Confidence 4445555555 35678999998888 99999999999999998877644332 236899999999 8999999999
Q ss_pred HhhcCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCccccccc
Q 001244 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1116)
Q Consensus 515 A~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1116)
|.+.+..+.-|-|++|
T Consensus 187 ATEAnSTFFSvSSSDL---------------------------------------------------------------- 202 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDL---------------------------------------------------------------- 202 (439)
T ss_pred HhhcCCceEEeehHHH----------------------------------------------------------------
Confidence 9887765554443322
Q ss_pred CcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCccccccc
Q 001244 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1116)
Q Consensus 595 ~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~ 674 (1116)
T Consensus 203 -------------------------------------------------------------------------------- 202 (439)
T KOG0739|consen 203 -------------------------------------------------------------------------------- 202 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-----ChhhHHHHHHHHhcC-------CCCEEEEe
Q 001244 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENL-------PSNVVVIG 742 (1116)
Q Consensus 675 ~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~-----~~e~~~~lk~~Le~L-------~g~VviIg 742 (1116)
.|+|-++.+.++..|||++.+ ..|.||||||||. +++ -+|....|+++|.-- ..+|+|+|
T Consensus 203 ----vSKWmGESEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 203 ----VSKWMGESEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred ----HHHHhccHHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 145666677899999999999 9999999999996 773 367777788776422 34999999
Q ss_pred eccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHH
Q 001244 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1116)
Q Consensus 743 S~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~q 822 (1116)
+|| .|+-+ |.+..||||+.
T Consensus 275 ATN------------------------------iPw~L-------------------------------DsAIRRRFekR 293 (439)
T KOG0739|consen 275 ATN------------------------------IPWVL-------------------------------DSAIRRRFEKR 293 (439)
T ss_pred cCC------------------------------CchhH-------------------------------HHHHHHHhhcc
Confidence 999 34433 45788899999
Q ss_pred HhhchhhhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 823 le~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
++||||...+|...++||---..+.|...|+.+|+.+|.+|+|.||-.+|+-|+..-+.
T Consensus 294 IYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvR 352 (439)
T KOG0739|consen 294 IYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVR 352 (439)
T ss_pred eeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHH
Confidence 99999999999999999944666778888999999999999999999999987765443
No 56
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.1e-18 Score=206.40 Aligned_cols=237 Identities=22% Similarity=0.313 Sum_probs=188.8
Q ss_pred CCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 446 ~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
-.++.|+|++|=.- |..|.-|.+-+- .||+++. |.+-=.-.++.+||+|||| ++++.||||.|-+-|||++-+
T Consensus 303 ~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCceeee
Confidence 67888999999988 999999999886 7888753 4333344679999999999 999999999999999999876
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
-.+.|--
T Consensus 376 SGSEFvE------------------------------------------------------------------------- 382 (774)
T KOG0731|consen 376 SGSEFVE------------------------------------------------------------------------- 382 (774)
T ss_pred chHHHHH-------------------------------------------------------------------------
Confidence 5433211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
.|+|-+++
T Consensus 383 ~~~g~~as------------------------------------------------------------------------ 390 (774)
T KOG0731|consen 383 MFVGVGAS------------------------------------------------------------------------ 390 (774)
T ss_pred HhcccchH------------------------------------------------------------------------
Confidence 22332110
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-------------ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcc
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-------------NNDAYGALKSKLENLPS--NVVVIGSHTQLDSR 750 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~-------------~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~ 750 (1116)
.++.||..+.. ..|+||||||||. +++ +....|-|..+||++.. +||+|++||++|.
T Consensus 391 ---rvr~lf~~ar~---~aP~iifideida-~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~- 462 (774)
T KOG0731|consen 391 ---RVRDLFPLARK---NAPSIIFIDEIDA-VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI- 462 (774)
T ss_pred ---HHHHHHHHhhc---cCCeEEEeccccc-ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc-
Confidence 56778887777 9999999999999 651 35678889999999854 8999999998877
Q ss_pred cccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchh
Q 001244 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 828 (1116)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lp 828 (1116)
||+ |+|| ||++++.+++|
T Consensus 463 ---------------------ld~---------------------------------------allrpGRfdr~i~i~~p 482 (774)
T KOG0731|consen 463 ---------------------LDP---------------------------------------ALLRPGRFDRQIQIDLP 482 (774)
T ss_pred ---------------------cCH---------------------------------------HhcCCCccccceeccCC
Confidence 655 7777 99999999999
Q ss_pred hhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHH
Q 001244 829 TLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1116)
Q Consensus 829 dlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq 908 (1116)
++.+|..|+++|..-..-..+.+|+..|+.+|.+|+|+||.-||..|+..+.. .+.-.|...++.+++++..
T Consensus 483 ~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r--------~~~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 483 DVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAAR--------KGLREIGTKDLEYAIERVI 554 (774)
T ss_pred chhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHH--------hccCccchhhHHHHHHHHh
Confidence 99999999999965222224888999999999999999999999999998887 3344567777888877554
Q ss_pred hh
Q 001244 909 GI 910 (1116)
Q Consensus 909 ~a 910 (1116)
..
T Consensus 555 ~G 556 (774)
T KOG0731|consen 555 AG 556 (774)
T ss_pred cc
Confidence 33
No 57
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.73 E-value=6.7e-18 Score=200.40 Aligned_cols=221 Identities=22% Similarity=0.271 Sum_probs=158.3
Q ss_pred cccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCe
Q 001244 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1116)
Q Consensus 442 ~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~ 521 (1116)
++++-...+++|++.-.+ ++.|..|....-.+.. ....|+ + +.++.|||+|||| +++++||||+|++++++
T Consensus 216 ~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 216 EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKSLTAKAIANDWQLP 286 (489)
T ss_pred ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHHHHHHHHHHHhCCC
Confidence 456666678899999997 8888888764322111 122333 2 4578999999999 99999999999999999
Q ss_pred EEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccC
Q 001244 522 LLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKK 601 (1116)
Q Consensus 522 LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (1116)
|+.+|...+++
T Consensus 287 ~~~l~~~~l~~--------------------------------------------------------------------- 297 (489)
T CHL00195 287 LLRLDVGKLFG--------------------------------------------------------------------- 297 (489)
T ss_pred EEEEEhHHhcc---------------------------------------------------------------------
Confidence 99999866655
Q ss_pred CCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCC
Q 001244 602 GDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSL 681 (1116)
Q Consensus 602 gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~ 681 (1116)
+|+|.
T Consensus 298 ----~~vGe----------------------------------------------------------------------- 302 (489)
T CHL00195 298 ----GIVGE----------------------------------------------------------------------- 302 (489)
T ss_pred ----cccCh-----------------------------------------------------------------------
Confidence 23332
Q ss_pred cchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC---------ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccc
Q 001244 682 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG---------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKE 752 (1116)
Q Consensus 682 ~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~---------~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~ 752 (1116)
....++.+|+.+.. .+|+||||||||+++.+ ..++.+.|...|+....+|+|||++|+++.
T Consensus 303 ----se~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~--- 372 (489)
T CHL00195 303 ----SESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDL--- 372 (489)
T ss_pred ----HHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhh---
Confidence 12256777877766 89999999999997662 123445555556655679999999998766
Q ss_pred cCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
||+++ ++ -+|...|+|++|+.++|...|+.++..-
T Consensus 373 -------------------Ld~al--------------------lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~----- 408 (489)
T CHL00195 373 -------------------LPLEI--------------------LRKGRFDEIFFLDLPSLEEREKIFKIHLQKF----- 408 (489)
T ss_pred -------------------CCHHH--------------------hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----
Confidence 66541 11 2666677777777776665555444331
Q ss_pred cccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 832 GQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
......+.|++.|+..+.+|+|+||+.+|..|...++.
T Consensus 409 ------------~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 409 ------------RPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred ------------CCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 11122567899999999999999999999999988775
No 58
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.71 E-value=2.6e-17 Score=210.76 Aligned_cols=148 Identities=21% Similarity=0.170 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCCh---hhHHHHHHHHhcCC-----CCEEEEeeccCCCcccccCCCCCc
Q 001244 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGNN---DAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGL 759 (1116)
Q Consensus 688 ~~i~~L~evl~~esk~~P~ILfidDie~~l~~~~---e~~~~lk~~Le~L~-----g~VviIgS~~~~d~~~~~~~~~~~ 759 (1116)
..|..+|+.|.. ++||||||||||. |+.+. ...+.|...|+... .+||||||||+||.
T Consensus 1719 ~rIr~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~---------- 1784 (2281)
T CHL00206 1719 FYITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQK---------- 1784 (2281)
T ss_pred HHHHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCccc----------
Confidence 348899999988 9999999999999 66432 23677888888652 38999999998887
Q ss_pred eeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhcccchh
Q 001244 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 837 (1116)
Q Consensus 760 ~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R~nIl 837 (1116)
||+ |++| ||++++++++|+..+|..++
T Consensus 1785 ------------LDP---------------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~kiL 1813 (2281)
T CHL00206 1785 ------------VDP---------------------------------------ALIAPNKLNTCIKIRRLLIPQQRKHF 1813 (2281)
T ss_pred ------------CCH---------------------------------------hHcCCCCCCeEEEeCCCCchhHHHHH
Confidence 776 5666 88888888888888888877
Q ss_pred hhhhhhhcCCC--CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHH
Q 001244 838 SIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1116)
Q Consensus 838 ~Iht~l~~~~l--ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq 908 (1116)
.+....+.-.+ .++|++.+|..|.||+|+|++.||.+|+..++.+. +..|+.+.+..|+....
T Consensus 1814 ~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~--------ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1814 FTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK--------KSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHHH
Confidence 76422222233 34689999999999999999999999999998843 44567777777766543
No 59
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.2e-17 Score=181.67 Aligned_cols=177 Identities=30% Similarity=0.404 Sum_probs=140.7
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---------
Q 001244 938 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA--------- 1008 (1116)
Q Consensus 938 iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el--------- 1008 (1116)
.+|..+..--|+.++--.+.|+.|..++...+...+.-....+....+-|||+||||||||+|++|+|+.+
T Consensus 131 ~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~ 210 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY 210 (423)
T ss_pred eccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccc
Confidence 34544445567888777889999999887766655544444445555789999999999999999999998
Q ss_pred CCeeeEEeccccccccccchHHHHHHHHHHHhcC-----CCeEEEEccccccccCCCC---CchhHHHHHHHHHHHHHhc
Q 001244 1009 GANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWD 1080 (1116)
Q Consensus 1009 g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~-----sPsIIfIDEID~Llg~R~~---~~~~~~lr~IlneLL~~Ld 1080 (1116)
...++++++..++++||+++-+.+.++|+..... ..-.++|||+|+|...|.+ ..+....-|++|.+|+++|
T Consensus 211 ~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 211 KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 3468899999999999999999999999987543 2236779999999866522 2333445688999999999
Q ss_pred CCCcCCCCCEEEEEEeCCCCCCcHHHHhhcCCeEEC
Q 001244 1081 GLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1081 gl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~r~I~V 1116 (1116)
.+.. ..+|++++|+|-.+.||.|+.+|=+-+.+|
T Consensus 291 rlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 291 RLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYV 324 (423)
T ss_pred Hhcc--CCCEEEEeccchHHHHHHHhhhHhhheeec
Confidence 9864 678999999999999999999998877765
No 60
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.68 E-value=7.7e-17 Score=187.49 Aligned_cols=234 Identities=21% Similarity=0.330 Sum_probs=167.3
Q ss_pred CCcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001244 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1116)
Q Consensus 446 ~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~ 524 (1116)
-+.-+|+|++...+ |..|..|..+.-..|++++.. +++ + ..++.|||+||+| +++++||||+|++.+++++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCC--CCHHHHHHHHHHhcCCCEEE
Confidence 34668999999998 999999999998899998765 444 2 3568899999999 99999999999999988776
Q ss_pred EecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCc
Q 001244 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1116)
Q Consensus 525 lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 604 (1116)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 64322111
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcch
Q 001244 605 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 684 (1116)
Q Consensus 605 v~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~ 684 (1116)
+|+|.
T Consensus 218 -k~~ge-------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 -KYLGE-------------------------------------------------------------------------- 222 (398)
T ss_pred -Hhcch--------------------------------------------------------------------------
Confidence 22221
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC--------h---hhHHHHHHHHhcCC--CCEEEEeeccCCCccc
Q 001244 685 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------N---DAYGALKSKLENLP--SNVVVIGSHTQLDSRK 751 (1116)
Q Consensus 685 ~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~--------~---e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~ 751 (1116)
....+..+|+.+.. .+|+||||||+|.++..+ . +....|...|+.+. .+|+||+++|++|.
T Consensus 223 -~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~-- 296 (398)
T PTZ00454 223 -GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT-- 296 (398)
T ss_pred -hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh--
Confidence 12256777877766 899999999999955321 1 23334445555553 48999999998776
Q ss_pred ccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchhhh
Q 001244 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVETL 830 (1116)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdl 830 (1116)
||+|+ ++ -+|..+|.|++|+.+++...|.
T Consensus 297 --------------------LDpAl--------------------lR~GRfd~~I~~~~P~~~~R~~Il~---------- 326 (398)
T PTZ00454 297 --------------------LDPAL--------------------LRPGRLDRKIEFPLPDRRQKRLIFQ---------- 326 (398)
T ss_pred --------------------CCHHH--------------------cCCCcccEEEEeCCcCHHHHHHHHH----------
Confidence 66641 21 2667777777777777664444
Q ss_pred hcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 831 k~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
+++. ..++ .++|++.++..+.+|+|+||..||..|...++.+. ...+..+++..++...
T Consensus 327 --------~~~~--~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--------~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 327 --------TITS--KMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN--------RYVILPKDFEKGYKTV 386 (398)
T ss_pred --------HHHh--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHH
Confidence 3321 2223 67799999999999999999999999999888732 3356666666665554
No 61
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.4e-17 Score=178.84 Aligned_cols=209 Identities=23% Similarity=0.298 Sum_probs=165.3
Q ss_pred cccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCC
Q 001244 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (1116)
Q Consensus 452 sf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~ 531 (1116)
||.+.... |+..+-+-+++-..|-|+++-. .-=-..++.+.|||+|| ++++.||||.|+...|.+|-+=.+.|.
T Consensus 183 ty~diGGl--e~QiQEiKEsvELPLthPE~Ye--emGikpPKGVIlyG~PG--TGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 183 TYADIGGL--ESQIQEIKESVELPLTHPEYYE--EMGIKPPKGVILYGEPG--TGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred hhcccccH--HHHHHHHHHhhcCCCCCHHHHH--HcCCCCCCeeEEeCCCC--CchhHHHHHHhcccchhhhhhhhHHHH
Confidence 56666666 7788888889989999998742 21223567899999999 899999999999998887643222111
Q ss_pred CCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeeeccC
Q 001244 532 GGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVGNV 611 (1116)
Q Consensus 532 g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~vg~~ 611 (1116)
- ||.|.+
T Consensus 257 Q-------------------------------------------------------------------------kylGdG 263 (440)
T KOG0726|consen 257 Q-------------------------------------------------------------------------KYLGDG 263 (440)
T ss_pred H-------------------------------------------------------------------------HHhccc
Confidence 1 555542
Q ss_pred CCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHHHHH
Q 001244 612 TSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLAIN 691 (1116)
Q Consensus 612 ~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~~i~ 691 (1116)
. .++.
T Consensus 264 p---------------------------------------------------------------------------klvR 268 (440)
T KOG0726|consen 264 P---------------------------------------------------------------------------KLVR 268 (440)
T ss_pred h---------------------------------------------------------------------------HHHH
Confidence 2 2889
Q ss_pred HHHHHHHhhcCCCCeEEEEcchhhhhc---------CChhhHHHHHHHHhcCC-----CCEEEEeeccCCCcccccCCCC
Q 001244 692 ELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPG 757 (1116)
Q Consensus 692 ~L~evl~~esk~~P~ILfidDie~~l~---------~~~e~~~~lk~~Le~L~-----g~VviIgS~~~~d~~~~~~~~~ 757 (1116)
+||.|+.+ ..|.|+||||||. ++ |..|+-......|..|. |.|-||-|||+.+.
T Consensus 269 qlF~vA~e---~apSIvFiDEIdA-iGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~-------- 336 (440)
T KOG0726|consen 269 ELFRVAEE---HAPSIVFIDEIDA-IGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET-------- 336 (440)
T ss_pred HHHHHHHh---cCCceEEeehhhh-hccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc--------
Confidence 99999999 9999999999999 66 34556555555566663 48999999998877
Q ss_pred CceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhcccc
Q 001244 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 835 (1116)
Q Consensus 758 ~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R~n 835 (1116)
||| +++| |.++.++|++|+.+.+..
T Consensus 337 --------------LDP---------------------------------------aLiRPGrIDrKIef~~pDe~Tkkk 363 (440)
T KOG0726|consen 337 --------------LDP---------------------------------------ALIRPGRIDRKIEFPLPDEKTKKK 363 (440)
T ss_pred --------------cCH---------------------------------------hhcCCCccccccccCCCchhhhce
Confidence 777 5566 899999999999999999
Q ss_pred hhhhhhh-hhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 836 IISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 836 Il~Iht~-l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
|+.|||. |.-. ++++|++|.....-++|+||..||..|-..++.
T Consensus 364 If~IHTs~Mtl~--~dVnle~li~~kddlSGAdIkAictEaGllAlR 408 (440)
T KOG0726|consen 364 IFQIHTSRMTLA--EDVNLEELIMTKDDLSGADIKAICTEAGLLALR 408 (440)
T ss_pred eEEEeecccchh--ccccHHHHhhcccccccccHHHHHHHHhHHHHH
Confidence 9999996 5422 889999999999999999999999999887776
No 62
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.3e-16 Score=190.69 Aligned_cols=235 Identities=22% Similarity=0.333 Sum_probs=186.7
Q ss_pred CCcccccccccccccchhHHHHHHhhhhhhcccc-ccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001244 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCN-NFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1116)
Q Consensus 446 ~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~-~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~ 524 (1116)
...+.|+|.+-=.- |..|.-|.+-+- .||.+ .|.+.+. =.++.+||.|||| +.+++||||.|-+.++|..-
T Consensus 142 ~~~~~v~F~DVAG~--dEakeel~EiVd-fLk~p~ky~~lGa---kiPkGvlLvGpPG--TGKTLLAkAvAgEA~VPFf~ 213 (596)
T COG0465 142 EDQVKVTFADVAGV--DEAKEELSELVD-FLKNPKKYQALGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPFFS 213 (596)
T ss_pred ccccCcChhhhcCc--HHHHHHHHHHHH-HHhCchhhHhccc---ccccceeEecCCC--CCcHHHHHHHhcccCCCcee
Confidence 34788999885444 888999988876 67764 4555666 4578999999999 89999999999999999654
Q ss_pred EecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCc
Q 001244 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1116)
Q Consensus 525 lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 604 (1116)
+-.++ -
T Consensus 214 iSGS~--------------------------------------------------------------------------F 219 (596)
T COG0465 214 ISGSD--------------------------------------------------------------------------F 219 (596)
T ss_pred ccchh--------------------------------------------------------------------------h
Confidence 32211 1
Q ss_pred e-eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcc
Q 001244 605 V-KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGD 683 (1116)
Q Consensus 605 v-~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~ 683 (1116)
| .|||-+++
T Consensus 220 VemfVGvGAs---------------------------------------------------------------------- 229 (596)
T COG0465 220 VEMFVGVGAS---------------------------------------------------------------------- 229 (596)
T ss_pred hhhhcCCCcH----------------------------------------------------------------------
Confidence 2 56665332
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC------------hhhHHHHHHHHhcCCC--CEEEEeeccCCCc
Q 001244 684 EVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN------------NDAYGALKSKLENLPS--NVVVIGSHTQLDS 749 (1116)
Q Consensus 684 ~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~------------~e~~~~lk~~Le~L~g--~VviIgS~~~~d~ 749 (1116)
-++.||+-+.+ +.||||||||||. ++++ .+..|-|..++|.+.+ +|+||++||++|.
T Consensus 230 -----RVRdLF~qAkk---~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV 300 (596)
T COG0465 230 -----RVRDLFEQAKK---NAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV 300 (596)
T ss_pred -----HHHHHHHHhhc---cCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc
Confidence 46667777766 8999999999999 7632 3688899999999974 9999999999887
Q ss_pred ccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhch
Q 001244 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 827 (1116)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~L 827 (1116)
||+ |+|| ||++|+-+++
T Consensus 301 ----------------------lD~---------------------------------------ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 301 ----------------------LDP---------------------------------------ALLRPGRFDRQILVEL 319 (596)
T ss_pred ----------------------chH---------------------------------------hhcCCCCcceeeecCC
Confidence 655 7777 9999999999
Q ss_pred hhhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHH
Q 001244 828 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1116)
Q Consensus 828 pdlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsd 906 (1116)
||+++|..|+++|.. .-.+ +++|+..++..|.+++|++++.++-+|+.++..+. +..++..++..+.+.
T Consensus 320 PDi~gRe~IlkvH~~--~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n--------~~~i~~~~i~ea~dr 389 (596)
T COG0465 320 PDIKGREQILKVHAK--NKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN--------KKEITMRDIEEAIDR 389 (596)
T ss_pred cchhhHHHHHHHHhh--cCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------CeeEeccchHHHHHH
Confidence 999999999999954 3333 89999999999999999999999999999988743 456777788888877
Q ss_pred HHhhhh
Q 001244 907 LQGIQS 912 (1116)
Q Consensus 907 Fq~aln 912 (1116)
....+.
T Consensus 390 v~~G~e 395 (596)
T COG0465 390 VIAGPE 395 (596)
T ss_pred HhcCcC
Confidence 765543
No 63
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.66 E-value=2.6e-16 Score=182.88 Aligned_cols=233 Identities=23% Similarity=0.319 Sum_probs=163.7
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
+..+++|+++..+ |..+.-|.......+++++.. +++- ..++.|||+|||| +++++||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g~---~~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVGI---EPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4568999999888 899999999988889987765 3432 3356899999999 999999999999999988877
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 6543322
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
+|+|.
T Consensus 204 ~~~g~--------------------------------------------------------------------------- 208 (389)
T PRK03992 204 KFIGE--------------------------------------------------------------------------- 208 (389)
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 22221
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------Chhh---HHHHHHHHhcCC--CCEEEEeeccCCCcccc
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDA---YGALKSKLENLP--SNVVVIGSHTQLDSRKE 752 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~---~~~lk~~Le~L~--g~VviIgS~~~~d~~~~ 752 (1116)
....++.+|+.+.. .+|+||||||+|.+... ..+. ...|...++.+. ++|+|||++|+++.
T Consensus 209 ~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~--- 282 (389)
T PRK03992 209 GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI--- 282 (389)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh---
Confidence 11256777877766 89999999999995431 1222 223333444443 48999999997665
Q ss_pred cCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
+|+++ ++ -+|...|.|++|+.+++...|..++
T Consensus 283 -------------------ld~al--------------------lRpgRfd~~I~v~~P~~~~R~~Il~~~~-------- 315 (389)
T PRK03992 283 -------------------LDPAI--------------------LRPGRFDRIIEVPLPDEEGRLEILKIHT-------- 315 (389)
T ss_pred -------------------CCHHH--------------------cCCccCceEEEECCCCHHHHHHHHHHHh--------
Confidence 66541 11 2567778888888777775554322
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
+...+ ...|+..|+..+.+|++++++.+|+.|...++.+. ...|+.+++..++...
T Consensus 316 ------------~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--------~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 316 ------------RKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--------RTEVTMEDFLKAIEKV 372 (389)
T ss_pred ------------ccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--------CCCcCHHHHHHHHHHH
Confidence 11222 45789999999999999999999999999888732 2345555555555544
No 64
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.64 E-value=3.2e-16 Score=187.37 Aligned_cols=236 Identities=22% Similarity=0.318 Sum_probs=164.4
Q ss_pred cCCCcccccccccccccchhHHHHHHhhhhhhccccc-cccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeE
Q 001244 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1116)
Q Consensus 444 v~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~-~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~L 522 (1116)
...+..+++|++++-+ ++.|..|..... .|++++ +.+++. ..++.|||+|||| +++++||||||+++++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~-~l~~~~~~~~~g~---~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVD-FLKNPSKFTKLGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHH-HHHCHHHHHhcCC---CCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 4455789999999988 999998887766 477765 334443 4457899999999 999999999999999988
Q ss_pred EEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCC
Q 001244 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1116)
Q Consensus 523 L~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1116)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 7665432211
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCc
Q 001244 603 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 682 (1116)
Q Consensus 603 drv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~ 682 (1116)
.|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 11111
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-----------ChhhHHHHHHHHhcCCC--CEEEEeeccCCCc
Q 001244 683 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENLPS--NVVVIGSHTQLDS 749 (1116)
Q Consensus 683 ~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~-----------~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~ 749 (1116)
....+..+|+.+.. .+|+||||||||.+... ..+..+.|...|+.+.+ +|+|||++|+++.
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ 205 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV 205 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh
Confidence 01145667777765 89999999999995431 12455667777777644 8999999997766
Q ss_pred ccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchh
Q 001244 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVE 828 (1116)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lp 828 (1116)
||+++ ++ -+|...|.|++|+.+++...|+.++..
T Consensus 206 ----------------------ld~al--------------------~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~--- 240 (495)
T TIGR01241 206 ----------------------LDPAL--------------------LRPGRFDRQVVVDLPDIKGREEILKVHAKN--- 240 (495)
T ss_pred ----------------------cCHHH--------------------hcCCcceEEEEcCCCCHHHHHHHHHHHHhc---
Confidence 66641 11 256667777777777666555533221
Q ss_pred hhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 829 dlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
..+ ...+++.++..+.+|+++||+.+|..|+..+..+ ++..|+.+++..++...
T Consensus 241 -----------------~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~--------~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 241 -----------------KKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK--------NKTEITMNDIEEAIDRV 295 (495)
T ss_pred -----------------CCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc--------CCCCCCHHHHHHHHHHH
Confidence 111 4567889999999999999999999987766542 23356777777776665
Q ss_pred H
Q 001244 908 Q 908 (1116)
Q Consensus 908 q 908 (1116)
.
T Consensus 296 ~ 296 (495)
T TIGR01241 296 I 296 (495)
T ss_pred h
Confidence 3
No 65
>CHL00181 cbbX CbbX; Provisional
Probab=99.62 E-value=1.8e-15 Score=169.29 Aligned_cols=157 Identities=19% Similarity=0.291 Sum_probs=118.9
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCC--CCeEEEEECCCCCchHHHHHHHHHHh-------CCeeeEEeccc
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 1019 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~--p~~gILL~GPPGTGKT~LArAIA~el-------g~pfI~Is~se 1019 (1116)
.+++|++.+|+++.+++.+ +..+..+.+.++.. +..++||+||||||||++|+++|+.+ ..+|+.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999998876 33445554444433 23469999999999999999999986 23699999999
Q ss_pred cccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
+.+.|+|..+..+..+|..|.. +||||||++.|...+.. ......+++.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 9999999888888888888754 89999999998643321 223356777788877653 3568888887643
Q ss_pred C-----CCcHHHHhhcCCeEEC
Q 001244 1100 F-----DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1100 ~-----~LD~ALlRRF~r~I~V 1116 (1116)
. .++|+|++||+..|++
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F 193 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDF 193 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEc
Confidence 2 3579999999988764
No 66
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-15 Score=174.39 Aligned_cols=163 Identities=18% Similarity=0.344 Sum_probs=131.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
..+|+.++-..+.++.|.+.+..+.+..+.|.+-|.. ..+|.|||||||||||+++.|||+++++.++-+..++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGka-wKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKA-WKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcc-hhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 4799999999999999999999999999999887643 34799999999999999999999999999999998775443
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCch-----hH-HHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-----HE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~-----~~-~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr 1098 (1116)
.+ ++.+...+.. .+||+|++||.=+.-+..... +. ..+-.+.-||..+||+-...+.--+||.|||.
T Consensus 275 ---~d--Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---SD--LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---HH--HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 22 6666655533 489999999987643222111 11 12245677999999998876667889999999
Q ss_pred CCCCcHHHHh--hcCCeEEC
Q 001244 1099 PFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1099 p~~LD~ALlR--RF~r~I~V 1116 (1116)
++.|||||+| |++.+|+|
T Consensus 348 ~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred hhhcCHhhcCCCcceeEEEc
Confidence 9999999999 99999986
No 67
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.62 E-value=2.6e-15 Score=165.36 Aligned_cols=157 Identities=18% Similarity=0.285 Sum_probs=115.8
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCC-CCCCeEEEEECCCCCchHHHHHHHHHHh-------CCeeeEEeccc
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQL-TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 1019 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l-~~p~~gILL~GPPGTGKT~LArAIA~el-------g~pfI~Is~se 1019 (1116)
+++++|++++|+++.+.+.++.........+.. .....++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 578999999999999988776443222222211 1223589999999999999999999875 34788999999
Q ss_pred cccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
+.+.|+|+.+..++.+|..|.. +||||||++.|.... ........++.|+..++.. ..++++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhccC---CEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCCcc
Confidence 9999999999999999988764 899999999985211 1122345667777777653 3456666665433
Q ss_pred C-----CCcHHHHhhcCCeEE
Q 001244 1100 F-----DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1100 ~-----~LD~ALlRRF~r~I~ 1115 (1116)
+ .+++++++||+..|.
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~ 174 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISID 174 (261)
T ss_pred hhHHHHhcChHHHhccceEEE
Confidence 2 378999999987665
No 68
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.4e-16 Score=165.60 Aligned_cols=147 Identities=20% Similarity=0.311 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhc---------CChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKS 754 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~---------~~~e~~~~lk~~Le~L~g-----~VviIgS~~~~d~~~~~~ 754 (1116)
.+.+||=++.+ +.|.|||+||||. |+ |.+|.-......|.+|.| ++-||-+||+.|.
T Consensus 228 mvrelfvmare---hapsiifmdeids-igs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi----- 298 (404)
T KOG0728|consen 228 MVRELFVMARE---HAPSIIFMDEIDS-IGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI----- 298 (404)
T ss_pred HHHHHHHHHHh---cCCceEeeecccc-cccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc-----
Confidence 78999999999 9999999999999 66 345555555555666655 9999999998776
Q ss_pred CCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhc
Q 001244 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 832 (1116)
Q Consensus 755 ~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~ 832 (1116)
||+| +|| |.++.+|||-|+.++
T Consensus 299 -----------------ld~a---------------------------------------llrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 299 -----------------LDPA---------------------------------------LLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred -----------------ccHh---------------------------------------hcCCCcccccccCCCCCHHH
Confidence 7664 444 555566666666666
Q ss_pred ccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhh
Q 001244 833 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1116)
Q Consensus 833 R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~a 910 (1116)
|.+|++||.+ .-+| -..||..++.+..+-+|+++..+|..|-.|+|. ..++-++.|+++-++...+..
T Consensus 323 r~~ilkihsr--kmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr--------errvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 323 RLDILKIHSR--KMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR--------ERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred HHHHHHHhhh--hhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH--------HhhccccHHHHHHHHHHHHhc
Confidence 6688899975 2233 667999999999999999999999999999997 335567777777777666543
No 69
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-15 Score=163.22 Aligned_cols=216 Identities=24% Similarity=0.340 Sum_probs=162.9
Q ss_pred CCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001244 445 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1116)
Q Consensus 445 ~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~ 524 (1116)
+-++-+||+.+.... +-.|+-..+|+-..|-|.++-+..- -.-++.+||+|||| ++++|||||.||+..|.++-
T Consensus 146 ~~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qig--idpprgvllygppg--~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQIG--IDPPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred CCCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHhC--CCCCcceEEeCCCC--CcHHHHHHHHhhccchheee
Confidence 345667888888887 8899999999999999988765332 23468899999999 99999999999999998875
Q ss_pred EecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCc
Q 001244 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1116)
Q Consensus 525 lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 604 (1116)
+-.+.+- +
T Consensus 220 vvgsefv------------------------------------------------------q------------------ 227 (408)
T KOG0727|consen 220 VVGSEFV------------------------------------------------------Q------------------ 227 (408)
T ss_pred eccHHHH------------------------------------------------------H------------------
Confidence 5422110 0
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcch
Q 001244 605 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 684 (1116)
Q Consensus 605 v~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~ 684 (1116)
||.|.+.
T Consensus 228 -kylgegp------------------------------------------------------------------------ 234 (408)
T KOG0727|consen 228 -KYLGEGP------------------------------------------------------------------------ 234 (408)
T ss_pred -HHhccCc------------------------------------------------------------------------
Confidence 5666422
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhc--------C----ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcc
Q 001244 685 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------G----NNDAYGALKSKLENLPS--NVVVIGSHTQLDSR 750 (1116)
Q Consensus 685 ~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~--------~----~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~ 750 (1116)
+.+..+|..+.+ +.|.||||||||. |+ | .+++.-.|...++.+.. +|-||.+||+.|.
T Consensus 235 ---rmvrdvfrlake---napsiifideida-iatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt- 306 (408)
T KOG0727|consen 235 ---RMVRDVFRLAKE---NAPSIIFIDEIDA-IATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT- 306 (408)
T ss_pred ---HHHHHHHHHHhc---cCCcEEEeehhhh-HhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc-
Confidence 256778888888 9999999999999 55 2 24444444555555543 9999999998887
Q ss_pred cccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchh
Q 001244 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 828 (1116)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lp 828 (1116)
||| ++|| |+++.+|+|||
T Consensus 307 ---------------------ldp---------------------------------------allrpgrldrkiefplp 326 (408)
T KOG0727|consen 307 ---------------------LDP---------------------------------------ALLRPGRLDRKIEFPLP 326 (408)
T ss_pred ---------------------cCH---------------------------------------hhcCCccccccccCCCC
Confidence 776 5666 88888888888
Q ss_pred hhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 829 dlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
+-..+.-++. |.-.+-++ +.+||+++...-...++++|..||..|-.++..
T Consensus 327 drrqkrlvf~--titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 327 DRRQKRLVFS--TITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred chhhhhhhHH--hhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 7554443333 33333445 889999999999999999999999999888876
No 70
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.61 E-value=3e-15 Score=167.28 Aligned_cols=156 Identities=19% Similarity=0.304 Sum_probs=120.4
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCC--CCeEEEEECCCCCchHHHHHHHHHHh---C----CeeeEEecccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---G----ANFINISMSSI 1020 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~--p~~gILL~GPPGTGKT~LArAIA~el---g----~pfI~Is~seL 1020 (1116)
+++|++++|+++.+.+.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+ + .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998887 44555555545432 45689999999999999999999877 2 37999999999
Q ss_pred ccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC-
Q 001244 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1099 (1116)
Q Consensus 1021 ~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp- 1099 (1116)
.+.|+|.++..++.+|+.|.. +|||||||+.|.+.+.. ......+++.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 999999988888899988755 89999999998644322 223356667777777653 3568888887643
Q ss_pred -C---CCcHHHHhhcCCeEEC
Q 001244 1100 -F---DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1100 -~---~LD~ALlRRF~r~I~V 1116 (1116)
+ .++++|.+||...|.+
T Consensus 172 ~~~~~~~np~L~sR~~~~i~f 192 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDF 192 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEe
Confidence 2 3689999999988764
No 71
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.1e-15 Score=163.98 Aligned_cols=210 Identities=20% Similarity=0.332 Sum_probs=160.5
Q ss_pred ccccccccccchhHHHHHHhhhhhhcccccccc-ccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEeccc
Q 001244 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1116)
Q Consensus 451 vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k-~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1116)
-++.+.... |....-|++|....+.|++-++ .+- -.++.+|+||||| +++++||+|-|-+.+|.+|-
T Consensus 168 E~YsDiGGl--dkQIqELvEAiVLpmth~ekF~~lgi---~pPKGvLmYGPPG--TGKTlmARAcAaqT~aTFLK----- 235 (424)
T KOG0652|consen 168 EQYSDIGGL--DKQIQELVEAIVLPMTHKEKFENLGI---RPPKGVLMYGPPG--TGKTLMARACAAQTNATFLK----- 235 (424)
T ss_pred ccccccccH--HHHHHHHHHHhccccccHHHHHhcCC---CCCCceEeeCCCC--CcHHHHHHHHHHhccchHHH-----
Confidence 345555555 7777889999999999987553 222 2467899999999 89999999999999988763
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeeec
Q 001244 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1116)
Q Consensus 530 l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~vg 609 (1116)
|+| | .+.+ .|+|
T Consensus 236 LAg--------------------------------P-----------------QLVQ-------------------MfIG 247 (424)
T KOG0652|consen 236 LAG--------------------------------P-----------------QLVQ-------------------MFIG 247 (424)
T ss_pred hcc--------------------------------h-----------------HHHh-------------------hhhc
Confidence 344 0 0011 5666
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHHH
Q 001244 610 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 689 (1116)
Q Consensus 610 ~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~~ 689 (1116)
.+++ +
T Consensus 248 dGAk---------------------------------------------------------------------------L 252 (424)
T KOG0652|consen 248 DGAK---------------------------------------------------------------------------L 252 (424)
T ss_pred chHH---------------------------------------------------------------------------H
Confidence 6432 5
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhc---------CChhhHHHHH---HHHhcCCC--CEEEEeeccCCCcccccCC
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALK---SKLENLPS--NVVVIGSHTQLDSRKEKSH 755 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~---------~~~e~~~~lk---~~Le~L~g--~VviIgS~~~~d~~~~~~~ 755 (1116)
+..-|..+.+ ..|+||||||+|. |+ |..|.-.... ..|+.++. .|-||++||+.|.
T Consensus 253 VRDAFaLAKE---kaP~IIFIDElDA-IGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi------ 322 (424)
T KOG0652|consen 253 VRDAFALAKE---KAPTIIFIDELDA-IGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI------ 322 (424)
T ss_pred HHHHHHHhhc---cCCeEEEEechhh-hccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc------
Confidence 6666777777 9999999999999 66 3344443333 44444433 8999999998776
Q ss_pred CCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhcc
Q 001244 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 833 (1116)
Q Consensus 756 ~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R 833 (1116)
||| ++|| |+++.+|+|+|+..+|
T Consensus 323 ----------------LDP---------------------------------------ALlRSGRLDRKIEfP~Pne~aR 347 (424)
T KOG0652|consen 323 ----------------LDP---------------------------------------ALLRSGRLDRKIEFPHPNEEAR 347 (424)
T ss_pred ----------------cCH---------------------------------------HHhhcccccccccCCCCChHHH
Confidence 766 6777 9999999999999999
Q ss_pred cchhhhhhh-hhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccc
Q 001244 834 SNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1116)
Q Consensus 834 ~nIl~Iht~-l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r 882 (1116)
..|++||.+ |.-+ .+++.++|+..|..|.|+....+|..|-..+|.|
T Consensus 348 arIlQIHsRKMnv~--~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 348 ARILQIHSRKMNVS--DDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred HHHHHHhhhhcCCC--CCCCHHHHhhcccccCchhheeeehhhhHHHHhc
Confidence 999999976 4322 7889999999999999999999999988888873
No 72
>CHL00176 ftsH cell division protein; Validated
Probab=99.60 E-value=1.5e-15 Score=185.47 Aligned_cols=238 Identities=21% Similarity=0.306 Sum_probs=160.9
Q ss_pred ccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeE
Q 001244 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1116)
Q Consensus 443 vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~L 522 (1116)
+....+..++|+++.-+ +..|..|.+... .|++++. |..-=...++.|||+|||| +++++||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 34556788999999988 899988888765 4777554 2222234567899999999 999999999999999988
Q ss_pred EEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCC
Q 001244 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1116)
Q Consensus 523 L~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1116)
+.++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 7765433211
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCc
Q 001244 603 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 682 (1116)
Q Consensus 603 drv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~ 682 (1116)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 01110
Q ss_pred chhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhc--------CC---hhhHHHHHHHHhcCCC--CEEEEeeccCCCc
Q 001244 683 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GN---NDAYGALKSKLENLPS--NVVVIGSHTQLDS 749 (1116)
Q Consensus 683 ~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~--------~~---~e~~~~lk~~Le~L~g--~VviIgS~~~~d~ 749 (1116)
....++.+|+.+.. ..|+||||||+|.+.. ++ .+..+.|...++.+.+ +|+||+++|+++.
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI 333 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh
Confidence 00145666666655 8999999999999542 12 2345556666666543 8999999997655
Q ss_pred ccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchh
Q 001244 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVE 828 (1116)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lp 828 (1116)
||+|+ ++ -+|...|.|.+|.-++|...|+.++..
T Consensus 334 ----------------------LD~AL--------------------lRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--- 368 (638)
T CHL00176 334 ----------------------LDAAL--------------------LRPGRFDRQITVSLPDREGRLDILKVHARN--- 368 (638)
T ss_pred ----------------------hhhhh--------------------hccccCceEEEECCCCHHHHHHHHHHHHhh---
Confidence 55531 11 145555666666655555444433322
Q ss_pred hhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 829 dlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
..+ .++++..++..+.+|+++|++.+|..|+..+..+ ++..++.+++..++...
T Consensus 369 -----------------~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~--------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 369 -----------------KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR--------KKATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHHH
Confidence 122 5668899999999999999999999988776542 23356777777777665
Q ss_pred H
Q 001244 908 Q 908 (1116)
Q Consensus 908 q 908 (1116)
.
T Consensus 424 ~ 424 (638)
T CHL00176 424 I 424 (638)
T ss_pred H
Confidence 3
No 73
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.59 E-value=1.5e-15 Score=178.29 Aligned_cols=230 Identities=22% Similarity=0.281 Sum_probs=161.4
Q ss_pred cccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001244 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1116)
Q Consensus 450 ~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1116)
.+||++.-.+ +..+..|..+.-..|.|+++. .++- ..++.|||+||+| +++++||||+|++++++++-++.+
T Consensus 179 ~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~gi---~~p~gVLL~GPPG--TGKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 179 LESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIGI---KPPKGVILYGPPG--TGKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred CCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcCC---CCCcEEEEECCCC--CCHHHHHHHHHHhhCCCEEEEecc
Confidence 4567776666 888888888888889988765 3442 2456799999999 999999999999999887776543
Q ss_pred cCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeee
Q 001244 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1116)
Q Consensus 529 ~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~v 608 (1116)
.|.+ +|+
T Consensus 252 eL~~-------------------------------------------------------------------------k~~ 258 (438)
T PTZ00361 252 ELIQ-------------------------------------------------------------------------KYL 258 (438)
T ss_pred hhhh-------------------------------------------------------------------------hhc
Confidence 3322 122
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHH
Q 001244 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1116)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~ 688 (1116)
|. ...
T Consensus 259 Ge---------------------------------------------------------------------------~~~ 263 (438)
T PTZ00361 259 GD---------------------------------------------------------------------------GPK 263 (438)
T ss_pred ch---------------------------------------------------------------------------HHH
Confidence 21 122
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhH---HHHHHHHhcC--CCCEEEEeeccCCCcccccCC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAY---GALKSKLENL--PSNVVVIGSHTQLDSRKEKSH 755 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~---~~lk~~Le~L--~g~VviIgS~~~~d~~~~~~~ 755 (1116)
.+..+|+.+.. ..|+||||||||.++.. ..+.. ..|...|+.+ .++|+||+++|++|.
T Consensus 264 ~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~------ 334 (438)
T PTZ00361 264 LVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES------ 334 (438)
T ss_pred HHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH------
Confidence 57778887766 89999999999996542 12232 3344445544 348999999997665
Q ss_pred CCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhh-hccccccccccCCchHHHHHHHHHHHhhchhhhhccc
Q 001244 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQI-SRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 834 (1116)
Q Consensus 756 ~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i-~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~ 834 (1116)
||+++ + ..+|..+|+|++|+.+++...|.
T Consensus 335 ----------------LDpaL--------------------lRpGRfd~~I~~~~Pd~~~R~~Il~-------------- 364 (438)
T PTZ00361 335 ----------------LDPAL--------------------IRPGRIDRKIEFPNPDEKTKRRIFE-------------- 364 (438)
T ss_pred ----------------hhHHh--------------------ccCCeeEEEEEeCCCCHHHHHHHHH--------------
Confidence 56541 1 13677788888888777775554
Q ss_pred chhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 835 nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
+|+. ...+ .++|++.++..+.+|++++|..||..|...|+.+. +..|+.+++..++...
T Consensus 365 ----~~~~--k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 365 ----IHTS--KMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER--------RMKVTQADFRKAKEKV 424 (438)
T ss_pred ----HHHh--cCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--------CCccCHHHHHHHHHHH
Confidence 3321 1123 56799999999999999999999999999888733 3456666666665554
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3e-15 Score=173.01 Aligned_cols=213 Identities=24% Similarity=0.361 Sum_probs=163.0
Q ss_pred cccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEeccc
Q 001244 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1116)
Q Consensus 450 ~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1116)
+|.|++||.- +..|..|.+++...+..++.+ ..|.+.-+.|||-||+| .+++||+||+|-+.+|.+.-+-++.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F---~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF---LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHhh---hccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHHH
Confidence 5889999998 899999999999888877764 46778888999999999 8999999999999999988777666
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeeec
Q 001244 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1116)
Q Consensus 530 l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~vg 609 (1116)
|++ ||+|
T Consensus 222 Lts-------------------------------------------------------------------------K~~G 228 (428)
T KOG0740|consen 222 LTS-------------------------------------------------------------------------KYVG 228 (428)
T ss_pred hhh-------------------------------------------------------------------------hccC
Confidence 655 5555
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHHH
Q 001244 610 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 689 (1116)
Q Consensus 610 ~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~~ 689 (1116)
. .+-.
T Consensus 229 e---------------------------------------------------------------------------~eK~ 233 (428)
T KOG0740|consen 229 E---------------------------------------------------------------------------SEKL 233 (428)
T ss_pred h---------------------------------------------------------------------------HHHH
Confidence 4 2338
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhcCC----hhhHHHHHHHH----hcC----CCCEEEEeeccCCCcccccCCCC
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN----NDAYGALKSKL----ENL----PSNVVVIGSHTQLDSRKEKSHPG 757 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~~~----~e~~~~lk~~L----e~L----~g~VviIgS~~~~d~~~~~~~~~ 757 (1116)
|++||+|+.. .||.||||||||.+|..+ .+.--.+++++ +.. .++|+|||+||+|..
T Consensus 234 vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e-------- 302 (428)
T KOG0740|consen 234 VRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWE-------- 302 (428)
T ss_pred HHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchH--------
Confidence 9999999999 999999999999988821 12221222222 111 339999999996544
Q ss_pred CceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchh
Q 001244 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 837 (1116)
Q Consensus 758 ~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl 837 (1116)
+| +.+..+|.-.+.|++|++|++...|+..+...
T Consensus 303 --------------~D---------------------ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----------- 336 (428)
T KOG0740|consen 303 --------------LD---------------------EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----------- 336 (428)
T ss_pred --------------HH---------------------HHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-----------
Confidence 33 23555788888888888888876666443332
Q ss_pred hhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 838 SIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 838 ~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
.+.+...|++.|+..|.+|++.||..+|+.|+..-+.
T Consensus 337 -------~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 337 -------PNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred -------CCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 1334556888899999999999999999999887554
No 75
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.4e-15 Score=161.83 Aligned_cols=126 Identities=23% Similarity=0.355 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhc---------CChhhHHHHH---HHHhcC--CCCEEEEeeccCCCcccccC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLT---------GNNDAYGALK---SKLENL--PSNVVVIGSHTQLDSRKEKS 754 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~---------~~~e~~~~lk---~~Le~L--~g~VviIgS~~~~d~~~~~~ 754 (1116)
.+.+||+++.. +.-|||||||||. ++ +.+|.-.... ..|+.+ .|++-|+-+||+||.
T Consensus 258 mvrelf~mart---kkaciiffdeida-iggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt----- 328 (435)
T KOG0729|consen 258 MVRELFEMART---KKACIIFFDEIDA-IGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT----- 328 (435)
T ss_pred HHHHHHHHhcc---cceEEEEeecccc-ccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC-----
Confidence 78999999988 8999999999999 65 2344433333 334444 469999999999887
Q ss_pred CCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhc
Q 001244 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 832 (1116)
Q Consensus 755 ~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~ 832 (1116)
||+ ++|| |+++.+||.||++++
T Consensus 329 -----------------ldp---------------------------------------allrpgrldrkvef~lpdleg 352 (435)
T KOG0729|consen 329 -----------------LDP---------------------------------------ALLRPGRLDRKVEFGLPDLEG 352 (435)
T ss_pred -----------------cCH---------------------------------------hhcCCcccccceeccCCcccc
Confidence 666 6677 999999999999999
Q ss_pred ccchhhhhhh-hhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 833 QSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 833 R~nIl~Iht~-l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
|.+|++||++ |.-. -+...+-|+.+.-+-+|++|..+|..|-.+++.
T Consensus 353 rt~i~kihaksmsve--rdir~ellarlcpnstgaeirsvcteagmfair 400 (435)
T KOG0729|consen 353 RTHIFKIHAKSMSVE--RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred cceeEEEeccccccc--cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHH
Confidence 9999999987 4311 233456688999999999999999999999887
No 76
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.9e-15 Score=174.21 Aligned_cols=222 Identities=22% Similarity=0.262 Sum_probs=173.8
Q ss_pred HhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 440 QEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 440 ~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
+|+|---+..++-|++.+.. .+.|++|.+.--..-|++...+ .-=-.....|||+|||| ++++.||-|+|..++
T Consensus 653 LR~ik~~k~tgi~w~digg~--~~~k~~l~~~i~~P~kyp~if~--~~plr~~~giLLyGppG--cGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 653 LRGIKLVKSTGIRWEDIGGL--FEAKKVLEEVIEWPSKYPQIFA--NCPLRLRTGILLYGPPG--CGKTLLASAIASNSN 726 (952)
T ss_pred hhhccccccCCCCceecccH--HHHHHHHHHHHhccccchHHHh--hCCcccccceEEECCCC--CcHHHHHHHHHhhCC
Confidence 46666667777899999998 8999999998776666655432 22223456899999999 999999999999999
Q ss_pred CeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccc
Q 001244 520 ARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTF 599 (1116)
Q Consensus 520 a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1116)
.+++-+..-.|..
T Consensus 727 ~~fisvKGPElL~------------------------------------------------------------------- 739 (952)
T KOG0735|consen 727 LRFISVKGPELLS------------------------------------------------------------------- 739 (952)
T ss_pred eeEEEecCHHHHH-------------------------------------------------------------------
Confidence 9998776432221
Q ss_pred cCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccC
Q 001244 600 KKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDS 679 (1116)
Q Consensus 600 ~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~ 679 (1116)
||+|.+
T Consensus 740 ------KyIGaS-------------------------------------------------------------------- 745 (952)
T KOG0735|consen 740 ------KYIGAS-------------------------------------------------------------------- 745 (952)
T ss_pred ------HHhccc--------------------------------------------------------------------
Confidence 777752
Q ss_pred CCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhc--------CC-hhhHHHHHHHHhcCCC--CEEEEeeccCCC
Q 001244 680 SLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GN-NDAYGALKSKLENLPS--NVVVIGSHTQLD 748 (1116)
Q Consensus 680 s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~--------~~-~e~~~~lk~~Le~L~g--~VviIgS~~~~d 748 (1116)
+..++.||+.+.+ ..||||||||.|. |+ |. .+.+|-|.+.|++..| +|.|+++|.+||
T Consensus 746 -------Eq~vR~lF~rA~~---a~PCiLFFDEfdS-iAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 746 -------EQNVRDLFERAQS---AKPCILFFDEFDS-IAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPD 814 (952)
T ss_pred -------HHHHHHHHHHhhc---cCCeEEEeccccc-cCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcc
Confidence 2267888988888 9999999999999 87 32 6789999999999987 999999999988
Q ss_pred cccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhc
Q 001244 749 SRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD 826 (1116)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~ 826 (1116)
. +|+ |+|| |+++.++-+
T Consensus 815 l----------------------iDp---------------------------------------ALLRpGRlD~~v~C~ 833 (952)
T KOG0735|consen 815 L----------------------IDP---------------------------------------ALLRPGRLDKLVYCP 833 (952)
T ss_pred c----------------------cCH---------------------------------------hhcCCCccceeeeCC
Confidence 7 776 5666 777777777
Q ss_pred hhhhhcccchhhhhhhhhcCC-C-CCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 827 VETLKGQSNIISIRSVLSRNG-L-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 827 Lpdlk~R~nIl~Iht~l~~~~-l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
+|+...|..|++. +.+.- + .|+||+.++.+|.+|+|+|+..|+..|-.++..+.
T Consensus 834 ~P~~~eRl~il~~---ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 834 LPDEPERLEILQV---LSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred CCCcHHHHHHHHH---HhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHH
Confidence 7777666555443 33322 2 79999999999999999999999988877666543
No 77
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.52 E-value=2.9e-14 Score=175.42 Aligned_cols=145 Identities=17% Similarity=0.297 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-----------ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccCC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSH 755 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~-----------~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~~~~ 755 (1116)
.+..+|+.+.. ..|+||||||+|.+... ..+..+.|...|+++.+ +|++||++|+++.
T Consensus 232 ~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~------ 302 (644)
T PRK10733 232 RVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV------ 302 (644)
T ss_pred HHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh------
Confidence 45556666655 78999999999995331 12466777777887755 7999999998766
Q ss_pred CCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhcc
Q 001244 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 833 (1116)
Q Consensus 756 ~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R 833 (1116)
||+| ++| ||++++++++|+...|
T Consensus 303 ----------------lD~A---------------------------------------l~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 303 ----------------LDPA---------------------------------------LLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred ----------------cCHH---------------------------------------HhCCcccceEEEcCCCCHHHH
Confidence 6654 333 4444444444444444
Q ss_pred cchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 834 SNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 834 ~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
..|+..|. .+..+ .++|+..|+..+.+|+++||..||..|+..+..+ ++..|+.+++..+....
T Consensus 328 ~~Il~~~~--~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~--------~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 328 EQILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG--------NKRVVSMVEFEKAKDKI 392 (644)
T ss_pred HHHHHHHh--hcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc--------CCCcccHHHHHHHHHHH
Confidence 44444442 22233 5678889999999999999999999999988763 33445666666655544
No 78
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.50 E-value=1.2e-13 Score=164.50 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=112.6
Q ss_pred cchhhHHHHHHHHHHHHhhcC-CCCeEEEEcchhhhhcC-----Ch----hhHHHHHHHHhcCC--CCEEEEeeccCCCc
Q 001244 682 GDEVDKLAINELFEVALNESK-SSPLIVFVKDIEKSLTG-----NN----DAYGALKSKLENLP--SNVVVIGSHTQLDS 749 (1116)
Q Consensus 682 ~~~~~~~~i~~L~evl~~esk-~~P~ILfidDie~~l~~-----~~----e~~~~lk~~Le~L~--g~VviIgS~~~~d~ 749 (1116)
|..+....+..+|+.+.+.+. ..|+||||||+|.++.. .. .+.+.|...|+.+. ++|+|||++|+++.
T Consensus 266 yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~ 345 (512)
T TIGR03689 266 YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDM 345 (512)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhh
Confidence 333445577888888877554 57999999999996652 11 34567777777775 58999999998776
Q ss_pred ccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhch
Q 001244 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDV 827 (1116)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~L 827 (1116)
||+| +.+ +|..+|+|++|+.+++...|..++...+
T Consensus 346 ----------------------LDpA---------------------LlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l 382 (512)
T TIGR03689 346 ----------------------IDPA---------------------ILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL 382 (512)
T ss_pred ----------------------CCHh---------------------hcCccccceEEEeCCCCHHHHHHHHHHHhhccC
Confidence 8886 444 8999999999999999999998887655
Q ss_pred hhh---h-----cccchhhhhh-----hhh---cCCC-----CCCCchhhhccccccchhhHHHHHHHhhhccccccccC
Q 001244 828 ETL---K-----GQSNIISIRS-----VLS---RNGL-----DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEA 886 (1116)
Q Consensus 828 pdl---k-----~R~nIl~Iht-----~l~---~~~l-----ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~ 886 (1116)
|.. . ....+..+-. .+. .+.+ ...+.+.|. .+..++|+.|..||..|...++.+...
T Consensus 383 ~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~-~~d~~sGa~i~~iv~~a~~~ai~~~~~- 460 (512)
T TIGR03689 383 PLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLY-FKDFVSGAMIANIVDRAKKRAIKDHIT- 460 (512)
T ss_pred CchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEe-ecccccHHHHHHHHHHHHHHHHHHHHh-
Confidence 430 0 0000001100 011 1111 222333333 345788999999999998888876552
Q ss_pred CCCCcccccccchhhhhHH
Q 001244 887 PGKDAKLKISTESIMYGLN 905 (1116)
Q Consensus 887 i~~d~KLvIS~ESLkvgls 905 (1116)
.+...+..+++..++.
T Consensus 461 ---~~~~~~~~~~l~~a~~ 476 (512)
T TIGR03689 461 ---GGQVGLRIEHLLAAVL 476 (512)
T ss_pred ---cCCcCcCHHHHHHHHH
Confidence 1122344444444443
No 79
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.49 E-value=4.1e-14 Score=163.04 Aligned_cols=231 Identities=23% Similarity=0.297 Sum_probs=157.7
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhcccccccc-ccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k-~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
+.-+++|+++... +..+..|.++....+++++..+ ++- ..++.|||+||+| +++++||||+|++.+++++-+
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g~---~~p~gvLL~GppG--tGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEVGI---EPPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCC--CCHHHHHHHHHHhCCCCEEec
Confidence 3457788887766 8889999998888888877653 332 2356799999999 999999999999998876655
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
....+..
T Consensus 188 ~~~~l~~------------------------------------------------------------------------- 194 (364)
T TIGR01242 188 VGSELVR------------------------------------------------------------------------- 194 (364)
T ss_pred chHHHHH-------------------------------------------------------------------------
Confidence 3211100
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
+|+|.
T Consensus 195 ~~~g~--------------------------------------------------------------------------- 199 (364)
T TIGR01242 195 KYIGE--------------------------------------------------------------------------- 199 (364)
T ss_pred HhhhH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------Ch---hhHHHHHHHHhcC--CCCEEEEeeccCCCcccc
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENL--PSNVVVIGSHTQLDSRKE 752 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~---e~~~~lk~~Le~L--~g~VviIgS~~~~d~~~~ 752 (1116)
....+..+|+.+.. ..|+||||||+|.+... .. .....+...++.+ .++|+||+++|+++.
T Consensus 200 ~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~--- 273 (364)
T TIGR01242 200 GARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI--- 273 (364)
T ss_pred HHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh---
Confidence 11245666776655 79999999999995432 11 2333444455555 358999999997655
Q ss_pred cCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhh-hccccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQI-SRLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i-~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
+|+++ + ..+|...|.|++|+.++++..|..
T Consensus 274 -------------------ld~al--------------------~r~grfd~~i~v~~P~~~~r~~Il~~---------- 304 (364)
T TIGR01242 274 -------------------LDPAL--------------------LRPGRFDRIIEVPLPDFEGRLEILKI---------- 304 (364)
T ss_pred -------------------CChhh--------------------cCcccCceEEEeCCcCHHHHHHHHHH----------
Confidence 55541 1 125667788888888888755542
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHH
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 905 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvgls 905 (1116)
|. ....+ ...+++.|+..+.+|+++|+..+|..|...++.+ ++..|+.+++..++.
T Consensus 305 --------~~--~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~--------~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 305 --------HT--RKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE--------ERDYVTMDDFIKAVE 361 (364)
T ss_pred --------HH--hcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHH
Confidence 21 11122 3468899999999999999999999999988773 233455555555544
No 80
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.47 E-value=2.1e-13 Score=170.21 Aligned_cols=146 Identities=25% Similarity=0.386 Sum_probs=111.3
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.++++.|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 567899999988877765531 122579999999999999999999987 77899999
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1017 ~seL~--sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
++.+. .+|.|+.+..++++|+.+.+..++|||||||+.|++.+...+.... +.+.|...+ .+..+.+||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~---~~~~L~~~l------~~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD---ASNLLKPAL------SSGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH---HHHHHHHHH------hCCCeEEEE
Confidence 98887 4788999999999999998888999999999999876533221111 112222222 235799999
Q ss_pred EeCCC-----CCCcHHHHhhcCCeEEC
Q 001244 1095 ATNRP-----FDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1095 TTNrp-----~~LD~ALlRRF~r~I~V 1116 (1116)
+||.. ..+|+|+.|||. .|.|
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~-~i~v 342 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQ-KIDV 342 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCc-eEEe
Confidence 99963 468999999996 4543
No 81
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.1e-13 Score=153.80 Aligned_cols=158 Identities=25% Similarity=0.436 Sum_probs=121.0
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccc
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE 1027 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~Ge 1027 (1116)
|++++-.......|..+....-.. + ....|.++||||||||||||++|+.||..+|..+--+...++--. -..
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNT----K--~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~q 426 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANT----K--KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQ 426 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccc----c--cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chH
Confidence 566665555555665544321110 0 113466799999999999999999999999998887777665321 224
Q ss_pred hHHHHHHHHHHHhcCCCe-EEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHH
Q 001244 1028 GEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 1106 (1116)
Q Consensus 1028 sEk~Ir~lF~~A~k~sPs-IIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~AL 1106 (1116)
....|.++|+-|+++..+ +|||||.|.++..|.....++..+..+|.||..-.. ...+++++.+||+|.+||.|+
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHHH
Confidence 566899999999998776 788999999999998888888999999999855322 245799999999999999999
Q ss_pred HhhcCCeEEC
Q 001244 1107 VRRLPRRTCV 1116 (1116)
Q Consensus 1107 lRRF~r~I~V 1116 (1116)
-+||+..|++
T Consensus 503 ~DRide~veF 512 (630)
T KOG0742|consen 503 NDRIDEVVEF 512 (630)
T ss_pred Hhhhhheeec
Confidence 9999998863
No 82
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.47 E-value=8.5e-14 Score=158.08 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=49.7
Q ss_pred ccccc--ccccchhHHHHHHhhhhhhccccccccccCCCC-CCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001244 452 SFESF--PYYLSDITKNVLIASTYVHLKCNNFAKYASDLP-TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1116)
Q Consensus 452 sf~~F--PYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~-~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1116)
+|+|. .||+...--. -+.+|+-+.-+ ..+. ..++-+||+||+| +++++||||+|+++|+.++.++..
T Consensus 113 ~f~~~~g~~~~~p~f~d----k~~~hi~kn~l----~~~~ik~PlgllL~GPPG--cGKTllAraiA~elg~~~i~vsa~ 182 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMD----KVAVHIAKNFL----ALPNIKVPLILGIWGGKG--QGKSFQCELVFKKMGIEPIVMSAG 182 (413)
T ss_pred chhhhcCccccCHHHHH----HHHHHHHhhhh----hccCCCCCeEEEeeCCCC--CCHHHHHHHHHHHcCCCeEEEEHH
Confidence 34444 5887664332 23345554322 2222 4566778899999 999999999999999999999987
Q ss_pred cCCC
Q 001244 529 LLPG 532 (1116)
Q Consensus 529 ~l~g 532 (1116)
.|.+
T Consensus 183 eL~s 186 (413)
T PLN00020 183 ELES 186 (413)
T ss_pred Hhhc
Confidence 6665
No 83
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.45 E-value=1.9e-13 Score=146.73 Aligned_cols=140 Identities=24% Similarity=0.377 Sum_probs=88.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~ 1025 (1116)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||..||++++.+|..++.+.+...
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~-- 89 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA-- 89 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC--
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH--
Confidence 57999999999999987666532221 1234589999999999999999999999999999887654221
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC--------cC------CCCCEE
Q 001244 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--------TK------DKERVL 1091 (1116)
Q Consensus 1026 GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~--------~k------~~~kVL 1091 (1116)
..+..++.... ...|||||||++| + +.+...|+-.|+... +. +-.++.
T Consensus 90 ----~dl~~il~~l~--~~~ILFIDEIHRl-----n-------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 ----GDLAAILTNLK--EGDILFIDEIHRL-----N-------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ----HHHHHHHHT----TT-EEEECTCCC--------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ----HHHHHHHHhcC--CCcEEEEechhhc-----c-------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 23344444332 3579999999988 2 222233333333211 10 013588
Q ss_pred EEEEeCCCCCCcHHHHhhcCCeE
Q 001244 1092 VLAATNRPFDLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1092 VIaTTNrp~~LD~ALlRRF~r~I 1114 (1116)
+||||++...|...+++||.-..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~ 174 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVL 174 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEE
T ss_pred EeeeeccccccchhHHhhcceec
Confidence 99999999999999999998654
No 84
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.44 E-value=5e-13 Score=167.79 Aligned_cols=148 Identities=22% Similarity=0.346 Sum_probs=107.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc--------
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1021 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-------- 1021 (1116)
++.|++++++.+.+++...... +.. ....+||+||||||||++|++||+.++.+|+++++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~--~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKM--KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCC--CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 5889999999999877643221 111 123799999999999999999999999999999876542
Q ss_pred -cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcC-----CC------cCCCCC
Q 001244 1022 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-----LR------TKDKER 1089 (1116)
Q Consensus 1022 -sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldg-----l~------~k~~~k 1089 (1116)
..|+|.....+.+.|..+....| ||||||||.+.....+ . ..+.|+..|+. +. ..+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-D-------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-C-------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 24677777778888888876565 8999999999743221 1 12334444431 10 112357
Q ss_pred EEEEEEeCCCCCCcHHHHhhcCCeEE
Q 001244 1090 VLVLAATNRPFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1090 VLVIaTTNrp~~LD~ALlRRF~r~I~ 1115 (1116)
+++|+|||..+.|+++|++||. .|.
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~-vi~ 488 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRME-VIE 488 (775)
T ss_pred EEEEEecCCchhCCHHHhCCee-EEe
Confidence 9999999999999999999994 443
No 85
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.43 E-value=4.6e-13 Score=152.20 Aligned_cols=127 Identities=28% Similarity=0.524 Sum_probs=94.8
Q ss_pred CCCcccccCcHHHH---HHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk---~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~ 1021 (1116)
..++++++|++... ..|.+++. .+ ...+++||||||||||+||+.||...+..|..++.-.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~----------~~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE----------AG----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh----------cC----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35789999998876 34555543 22 2358999999999999999999999999999998743
Q ss_pred cccccchHHHHHHHHHHHhcCC----CeEEEEccccccccCCCCCchhHHHHHHHH-HHHHHhcCCCcCCCCCEEEEEEe
Q 001244 1022 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKN-EFMVNWDGLRTKDKERVLVLAAT 1096 (1116)
Q Consensus 1022 sk~~GesEk~Ir~lF~~A~k~s----PsIIfIDEID~Llg~R~~~~~~~~lr~Iln-eLL~~Ldgl~~k~~~kVLVIaTT 1096 (1116)
...+.++++|+.|++.. ..|||||||+++ + +..| .||-.+ ++..|++||||
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----n--------K~QQD~lLp~v------E~G~iilIGAT 139 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----N--------KAQQDALLPHV------ENGTIILIGAT 139 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----C--------hhhhhhhhhhh------cCCeEEEEecc
Confidence 23567899999996543 379999999987 2 2222 233332 35678888876
Q ss_pred --CCCCCCcHHHHhhcC
Q 001244 1097 --NRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1097 --Nrp~~LD~ALlRRF~ 1111 (1116)
|..+.|.+||++|-.
T Consensus 140 TENPsF~ln~ALlSR~~ 156 (436)
T COG2256 140 TENPSFELNPALLSRAR 156 (436)
T ss_pred CCCCCeeecHHHhhhhh
Confidence 566889999999863
No 86
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.37 E-value=2.2e-12 Score=160.53 Aligned_cols=146 Identities=21% Similarity=0.352 Sum_probs=108.3
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.++.+.|.+.....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 345688888888888776642 112478999999999999999999875 55666666
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1017 ~seL~--sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
...+. .+|.|+.+..++.+|..+.+..++|||||||+.|++.+...+.+.....++..++ .+.++.|||
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 66665 4577888999999999998888999999999999977653222222222333332 246799999
Q ss_pred EeCCCC-----CCcHHHHhhcCCeEEC
Q 001244 1095 ATNRPF-----DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1095 TTNrp~-----~LD~ALlRRF~r~I~V 1116 (1116)
+|+.++ .+|++|.|||. .|.|
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v 346 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDI 346 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEe
Confidence 999764 58999999996 5654
No 87
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.6e-12 Score=143.28 Aligned_cols=212 Identities=21% Similarity=0.237 Sum_probs=160.4
Q ss_pred cccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEeccc
Q 001244 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1116)
Q Consensus 450 ~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1116)
++||++.--- .++.+ .|.+..-+||++++++.-. + -..+.-.||+||+| .+++.||+|.|...||..|.+-++.
T Consensus 128 ~~s~~~~ggl-~~qir-elre~ielpl~np~lf~rv-g-Ik~Pkg~ll~GppG--tGKTlla~~Vaa~mg~nfl~v~ss~ 201 (388)
T KOG0651|consen 128 NISFENVGGL-FYQIR-ELREVIELPLTNPELFLRV-G-IKPPKGLLLYGPPG--TGKTLLARAVAATMGVNFLKVVSSA 201 (388)
T ss_pred ccCHHHhCCh-HHHHH-HHHhheEeeccCchhcccc-C-CCCCceeEEeCCCC--CchhHHHHHHHHhcCCceEEeeHhh
Confidence 4566665432 23443 4667778999999986521 1 23467789999999 8999999999999999999887644
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeeec
Q 001244 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1116)
Q Consensus 530 l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~vg 609 (1116)
|-. +|+|
T Consensus 202 lv~-------------------------------------------------------------------------kyiG 208 (388)
T KOG0651|consen 202 LVD-------------------------------------------------------------------------KYIG 208 (388)
T ss_pred hhh-------------------------------------------------------------------------hhcc
Confidence 332 5666
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHHH
Q 001244 610 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 689 (1116)
Q Consensus 610 ~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~~ 689 (1116)
.++ ++
T Consensus 209 Esa---------------------------------------------------------------------------Rl 213 (388)
T KOG0651|consen 209 ESA---------------------------------------------------------------------------RL 213 (388)
T ss_pred cHH---------------------------------------------------------------------------HH
Confidence 532 37
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhc--------CChhhHHHHHHHHhcCCC-----CEEEEeeccCCCcccccCCC
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHP 756 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~--------~~~e~~~~lk~~Le~L~g-----~VviIgS~~~~d~~~~~~~~ 756 (1116)
|++.|.-+.+ .+|||||+||||...+ .+.++...|-..|+.+.| .|-+|+++|++|.
T Consensus 214 IRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt------- 283 (388)
T KOG0651|consen 214 IRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT------- 283 (388)
T ss_pred HHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc-------
Confidence 8888888877 9999999999999443 245666666666666644 9999999998887
Q ss_pred CCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHH--HHHHHHhhchhhhhccc
Q 001244 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1116)
Q Consensus 757 ~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LR--Rfe~qle~~Lpdlk~R~ 834 (1116)
||+ ++|| |+++.+++|+|++.+|.
T Consensus 284 ---------------Ldp---------------------------------------aLlRpGRldrk~~iPlpne~~r~ 309 (388)
T KOG0651|consen 284 ---------------LDP---------------------------------------ALLRPGRLDRKVEIPLPNEQARL 309 (388)
T ss_pred ---------------cch---------------------------------------hhcCCccccceeccCCcchhhce
Confidence 766 5666 99999999999999999
Q ss_pred chhhhhhh-hhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 835 NIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 835 nIl~Iht~-l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
.|++||.. +...| ..|-+++.....+|.|+++..+|++|=.+++.
T Consensus 310 ~I~Kih~~~i~~~G--eid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 310 GILKIHVQPIDFHG--EIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred eeEeeccccccccc--cccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 99999975 44433 33467788889999999999999887655443
No 88
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34 E-value=4.3e-12 Score=160.63 Aligned_cols=142 Identities=23% Similarity=0.378 Sum_probs=108.2
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.++.++|.+.....+.+.+.. +...++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 567899999877777665541 122479999999999999999999988 78999999
Q ss_pred ccccc--cccccchHHHHHHHHHHHhc-CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEE
Q 001244 1017 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1017 ~seL~--sk~~GesEk~Ir~lF~~A~k-~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVI 1093 (1116)
+..+. .+|.|+.+..++.+|..+.+ ..++|||||||+.|.+.+...+..... .++...+ .+..+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~-~~lkp~l---------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG-NMLKPAL---------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH-HHhcchh---------hcCCCeEE
Confidence 98876 45778999999999998654 468999999999998776443333222 2221111 24679999
Q ss_pred EEeCCCC-----CCcHHHHhhcCC
Q 001244 1094 AATNRPF-----DLDEAVVRRLPR 1112 (1116)
Q Consensus 1094 aTTNrp~-----~LD~ALlRRF~r 1112 (1116)
|||+..+ .+|+|+.|||..
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~~ 335 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQK 335 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCCE
Confidence 9999875 489999999964
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.31 E-value=7.2e-12 Score=158.36 Aligned_cols=142 Identities=21% Similarity=0.346 Sum_probs=110.4
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.++.+.|.++.++.+.+.+.. +...++||+||||||||++|+++|... +..|+.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 467789999999998887641 223589999999999999999999987 47899999
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1017 ~seL~--sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
++.+. .+|.|+.+..++.+|+.+.+..+.|||||||+.|++.+...+.... ..++...+ .+..+.+||
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~-a~lLkp~l---------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA-ANILKPAL---------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH-HHHhHHHH---------hCCCcEEEE
Confidence 98876 4678999999999999998888899999999999976644332221 22222121 145789999
Q ss_pred EeCCCC-----CCcHHHHhhcCC
Q 001244 1095 ATNRPF-----DLDEAVVRRLPR 1112 (1116)
Q Consensus 1095 TTNrp~-----~LD~ALlRRF~r 1112 (1116)
+|+..+ ..|+++.+||..
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~~ 335 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQP 335 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcceE
Confidence 998663 589999999964
No 90
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=1.1e-11 Score=156.80 Aligned_cols=145 Identities=21% Similarity=0.360 Sum_probs=107.2
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.+++++|.++....+.+.+.. +...++||+||||||||++|+.+|+.+ +..++.++
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 577899999877666655431 122479999999999999999999986 35688888
Q ss_pred cccccc--ccccchHHHHHHHHHHHhcC-CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEE
Q 001244 1017 MSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1017 ~seL~s--k~~GesEk~Ir~lF~~A~k~-sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVI 1093 (1116)
++.+.. .+.|+.+..++.+|..+++. .+.|||||||+.|.+.+...+.+... +.|+-.+ .+..+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEEE
Confidence 887763 57889999999999999753 57899999999998766443323222 2222222 24679999
Q ss_pred EEeCCC-----CCCcHHHHhhcCCeEEC
Q 001244 1094 AATNRP-----FDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1094 aTTNrp-----~~LD~ALlRRF~r~I~V 1116 (1116)
|||+.. ..+|+||.|||. .|.|
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~-~i~v 347 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQ-VVKV 347 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCe-EEEe
Confidence 999864 359999999995 4543
No 91
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.27 E-value=1.3e-11 Score=143.06 Aligned_cols=90 Identities=28% Similarity=0.352 Sum_probs=66.4
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-ccccc-c
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFG-E 1027 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-sk~~G-e 1027 (1116)
.|.|++++++.+..++....++..+.....-..++++|||+||||||||++|++||..++.+|+.+++..+. ..|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 378999999999877653222221111111122348999999999999999999999999999999998886 47888 5
Q ss_pred hHHHHHHHHHHH
Q 001244 1028 GEKYVKAVFSLA 1039 (1116)
Q Consensus 1028 sEk~Ir~lF~~A 1039 (1116)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 667777777666
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=2.9e-11 Score=135.45 Aligned_cols=147 Identities=23% Similarity=0.301 Sum_probs=94.4
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccccc
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1026 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~G 1026 (1116)
+|++++|+++.++.|...+...... ..++.++||+||||||||+||+++|++++..+..+..+.+...
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~--- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP--- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc---
Confidence 6899999999999998877532111 1234579999999999999999999999988776655432211
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH--hcCC-Cc----CCCCCEEEEEEeCCC
Q 001244 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGL-RT----KDKERVLVLAATNRP 1099 (1116)
Q Consensus 1027 esEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~--Ldgl-~~----k~~~kVLVIaTTNrp 1099 (1116)
..+...+... ..+.+||||||+.+.. ..++.+..+++..... ++.. .. ....++.+|++||++
T Consensus 70 ---~~l~~~l~~~--~~~~vl~iDEi~~l~~-----~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 70 ---GDLAAILTNL--EEGDVLFIDEIHRLSP-----AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ---hhHHHHHHhc--ccCCEEEEehHhhhCH-----HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 1222222222 2467999999998831 1222222222222111 0000 00 012348899999999
Q ss_pred CCCcHHHHhhcCCeEE
Q 001244 1100 FDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1100 ~~LD~ALlRRF~r~I~ 1115 (1116)
..+++++++||...+.
T Consensus 140 ~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 140 GMLTSPLRDRFGIILR 155 (305)
T ss_pred cccCHHHHhhcceEEE
Confidence 9999999999976654
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.27 E-value=2.2e-11 Score=154.53 Aligned_cols=144 Identities=21% Similarity=0.363 Sum_probs=107.8
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.++.+.|.++..+.+.+.+.. +...++||+||||||||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 467789999877777666541 123578999999999999999999986 67889998
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcC-CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEE
Q 001244 1017 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1017 ~seL~--sk~~GesEk~Ir~lF~~A~k~-sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVI 1093 (1116)
+..+. .+|.|+.+..++.+|..+.+. .+.|||||||+.|++.+...+... ..+.|.-.+ .+..+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEEE
Confidence 88875 467888999999999998764 589999999999986554322222 222222111 24679999
Q ss_pred EEeCCC-----CCCcHHHHhhcCCeEE
Q 001244 1094 AATNRP-----FDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1094 aTTNrp-----~~LD~ALlRRF~r~I~ 1115 (1116)
|+|+.. ..+|+++.|||.. |+
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~~-i~ 332 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQP-VF 332 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCCE-EE
Confidence 999976 3589999999964 44
No 94
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.27 E-value=1e-11 Score=144.06 Aligned_cols=90 Identities=26% Similarity=0.348 Sum_probs=66.9
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc-cccc-c
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1027 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s-k~~G-e 1027 (1116)
.|.|++++++.+..++....++..+.........+.++||+||||||||++|++||..++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3789999999998777532222211111111122479999999999999999999999999999999998875 6888 4
Q ss_pred hHHHHHHHHHHH
Q 001244 1028 GEKYVKAVFSLA 1039 (1116)
Q Consensus 1028 sEk~Ir~lF~~A 1039 (1116)
.+..++.+|..|
T Consensus 96 ~e~~ir~L~~~A 107 (443)
T PRK05201 96 VESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHHH
Confidence 567777777777
No 95
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.25 E-value=2.9e-12 Score=150.40 Aligned_cols=235 Identities=18% Similarity=0.194 Sum_probs=157.2
Q ss_pred hhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhhhhhhhhhccChhHHHHHH
Q 001244 855 SLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKL 934 (1116)
Q Consensus 855 eLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~L~~~lk~~v~~~e~e~~l 934 (1116)
.+++.|..+++.+.-.++..-......-.+..++..+.+...++.++.|+.+|..++.....+...+.+.+.........
T Consensus 50 ~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~ 129 (464)
T COG2204 50 DLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQREN 129 (464)
T ss_pred CEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhhhhh
Confidence 46777888887776666665555544433444466677778889999999999888777666655554433322221111
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCe
Q 001244 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GAN 1011 (1116)
Q Consensus 935 l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~p 1011 (1116)
.. ..........+++|....++++.+.+... ......|||+|++||||..+|++|++.+ +.|
T Consensus 130 ~~---~~~~~~~~~~~liG~S~am~~l~~~i~kv------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~P 194 (464)
T COG2204 130 RR---SLKRAKSLGGELVGESPAMQQLRRLIAKV------------APSDASVLITGESGTGKELVARAIHQASPRAKGP 194 (464)
T ss_pred hh---hhhccccccCCceecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCC
Confidence 11 11111235678999999999998887631 2334579999999999999999999998 679
Q ss_pred eeEEeccccc-----cccccchH-------HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHh
Q 001244 1012 FINISMSSIT-----SKWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1116)
Q Consensus 1012 fI~Is~seL~-----sk~~GesE-------k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~L 1079 (1116)
||.++|+.+- +..||... ..-...|+.|.+ ++||||||..| +...|..+.+++++--...
T Consensus 195 FVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~r 266 (464)
T COG2204 195 FIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFER 266 (464)
T ss_pred ceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEe
Confidence 9999998763 33455321 233457888877 89999999988 3344555556665544333
Q ss_pred cCCCcCCCCCEEEEEEeCCCCCCcHHHHh-hcCCeE
Q 001244 1080 DGLRTKDKERVLVLAATNRPFDLDEAVVR-RLPRRT 1114 (1116)
Q Consensus 1080 dgl~~k~~~kVLVIaTTNrp~~LD~ALlR-RF~r~I 1114 (1116)
-|-...-+..|.||+|||+ +|...+-. ||...+
T Consensus 267 vG~~~~i~vdvRiIaaT~~--dL~~~v~~G~FReDL 300 (464)
T COG2204 267 VGGNKPIKVDVRIIAATNR--DLEEEVAAGRFREDL 300 (464)
T ss_pred cCCCcccceeeEEEeecCc--CHHHHHHcCCcHHHH
Confidence 3433334567999999998 67777666 665543
No 96
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.25 E-value=4.7e-11 Score=135.91 Aligned_cols=148 Identities=24% Similarity=0.292 Sum_probs=97.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~ 1025 (1116)
.+|++++|.++.++.+...+..... . ..+..++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753211 1 234468999999999999999999999999887776553321
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHH--HhcCCCc-----CCCCCEEEEEEeCC
Q 001244 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV--NWDGLRT-----KDKERVLVLAATNR 1098 (1116)
Q Consensus 1026 GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~--~Ldgl~~-----k~~~kVLVIaTTNr 1098 (1116)
...+..++... ..++|||||||+.+.. ...+.+..+++.+.. .++.... ..-.++.+|++||+
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLSP-----VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcch-----HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 22344444433 2468999999998831 112222222221110 0111000 01124788999999
Q ss_pred CCCCcHHHHhhcCCeEE
Q 001244 1099 PFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1099 p~~LD~ALlRRF~r~I~ 1115 (1116)
+..++++|++||...+.
T Consensus 160 ~~~l~~~L~sRf~~~~~ 176 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQR 176 (328)
T ss_pred cccCCHHHHHhcCeeee
Confidence 99999999999976654
No 97
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.24 E-value=1.4e-10 Score=112.03 Aligned_cols=120 Identities=43% Similarity=0.660 Sum_probs=81.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccchHHH---HHHHHHHHhcCCCeEEEEccccccccC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~GesEk~---Ir~lF~~A~k~sPsIIfIDEID~Llg~ 1058 (1116)
..++|+||||||||+++++++..+ +.+++.+++......+....... ....+..+....+.+|+|||++.+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~-- 97 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS-- 97 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh--
Confidence 579999999999999999999999 89999999877654432221111 1223344455678999999999771
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCc--CCCCCEEEEEEeCCCC--CCcHHHHhhcCCeEEC
Q 001244 1059 RENPGEHEAMRKMKNEFMVNWDGLRT--KDKERVLVLAATNRPF--DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1059 R~~~~~~~~lr~IlneLL~~Ldgl~~--k~~~kVLVIaTTNrp~--~LD~ALlRRF~r~I~V 1116 (1116)
... ...++..+..... ....++.||+++|... .+++.+.+||+.+|.+
T Consensus 98 ------~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 98 ------RGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred ------HHH----HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeec
Confidence 011 1122222222211 1236789999999887 7899999999877754
No 98
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.5e-11 Score=142.06 Aligned_cols=151 Identities=23% Similarity=0.414 Sum_probs=108.1
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-------
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------- 1021 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~------- 1021 (1116)
+|-.|++++|+++.+++.--.. ++. ...+-+.|+||||+|||.+|+.||..+|..|++++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rgs--~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RGS--VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------ccc--CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4678999999999998863111 111 1224577999999999999999999999999999987552
Q ss_pred --cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchh-HHHHHHHH-----HHHHHhcCCCcCCCCCEEEE
Q 001244 1022 --SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKN-----EFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1022 --sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~-~~lr~Iln-----eLL~~Ldgl~~k~~~kVLVI 1093 (1116)
-.|+|.....+-+.+....-..| +|+|||||.+. ++..++. .++.+++. .|+.+.-.++ -+-.+|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp-~DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVP-VDLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCChHHHHHHhcChhhccchhhhccccc-cchhheEEE
Confidence 34888887888777777766555 88999999995 2222222 23322221 2332222222 234689999
Q ss_pred EEeCCCCCCcHHHHhhcC
Q 001244 1094 AATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1094 aTTNrp~~LD~ALlRRF~ 1111 (1116)
||+|..+.|+++|++|+.
T Consensus 559 cTAN~idtIP~pLlDRME 576 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRME 576 (906)
T ss_pred EeccccccCChhhhhhhh
Confidence 999999999999999984
No 99
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.23 E-value=4e-11 Score=140.53 Aligned_cols=154 Identities=23% Similarity=0.365 Sum_probs=101.3
Q ss_pred Cccc-ccCcHHHHHHHHHHHHccccChhhhhc--CCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-c
Q 001244 947 TFDD-IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-S 1022 (1116)
Q Consensus 947 tfdd-IgGldevk~~L~e~V~lpl~~pelf~~--~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-s 1022 (1116)
.+++ ++|++.+++.|..++....++-..... .....+..++||+||||||||++|+++|..++.+|+.+++..+. .
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 3443 799999999997776433222111000 01122446899999999999999999999999999999998875 3
Q ss_pred ccccchH-HHHHHHHHHH----hcCCCeEEEEccccccccCCCCCch-hH-HHHHHHHHHHHHhcCCC---------cCC
Q 001244 1023 KWFGEGE-KYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------TKD 1086 (1116)
Q Consensus 1023 k~~GesE-k~Ir~lF~~A----~k~sPsIIfIDEID~Llg~R~~~~~-~~-~lr~IlneLL~~Ldgl~---------~k~ 1086 (1116)
.|+|... ..+..++..+ .+..++||||||||.+...+.+... .. ....+++.||..|++.. ...
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 6788753 3445555432 3456799999999999755322111 00 11246778888887532 112
Q ss_pred CCCEEEEEEeCCCC
Q 001244 1087 KERVLVLAATNRPF 1100 (1116)
Q Consensus 1087 ~~kVLVIaTTNrp~ 1100 (1116)
....++|.|+|-.+
T Consensus 228 ~~~~~~i~t~nilf 241 (412)
T PRK05342 228 QQEFIQVDTTNILF 241 (412)
T ss_pred CCCeEEeccCCcee
Confidence 23567888888754
No 100
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.6e-11 Score=142.81 Aligned_cols=152 Identities=24% Similarity=0.367 Sum_probs=109.3
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-------
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------- 1021 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~------- 1021 (1116)
.|-.|++++|+++.+++.-.... ..+.. .=++|+||||+|||+|++.||+.+|..|++++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 46789999999999988743222 11111 2477999999999999999999999999999987553
Q ss_pred --cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHH-----HHHHHhcCCCcCCCCCEEEEE
Q 001244 1022 --SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1022 --sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~Iln-----eLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
-.|+|.....+-+-...|....| +++|||||.|... ..+....++.+++. .|..+--.+. -+-.+|++||
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~-yDLS~VmFia 471 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVP-YDLSKVMFIA 471 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCc-cchhheEEEe
Confidence 34888888888888888877666 8899999999532 22222333333332 2322222221 1345899999
Q ss_pred EeCCCCCCcHHHHhhcC
Q 001244 1095 ATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1095 TTNrp~~LD~ALlRRF~ 1111 (1116)
|+|..+.|+.+|++|+.
T Consensus 472 TANsl~tIP~PLlDRME 488 (782)
T COG0466 472 TANSLDTIPAPLLDRME 488 (782)
T ss_pred ecCccccCChHHhccee
Confidence 99999999999999984
No 101
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.9e-10 Score=139.50 Aligned_cols=127 Identities=24% Similarity=0.322 Sum_probs=95.5
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCC--CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc--
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 1022 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~--~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-- 1022 (1116)
.++|++++...+-++|.... .+.. +|...+||.||.|+|||-||+|+|..+ .-.||.|+++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr--------~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSR--------AGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhh--------cccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 57888888888888886421 1222 367899999999999999999999998 56899999997432
Q ss_pred -------ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCC-------C
Q 001244 1023 -------KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK-------E 1088 (1116)
Q Consensus 1023 -------k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~-------~ 1088 (1116)
.|.|.. ...++.+..++.+-+||+|||||. +...+++.|++.+|...-.+. .
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEk------------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEK------------AHPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhh------------cCHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 234433 335778888888889999999983 235677778888876554443 3
Q ss_pred CEEEEEEeCC
Q 001244 1089 RVLVLAATNR 1098 (1116)
Q Consensus 1089 kVLVIaTTNr 1098 (1116)
+++||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6999999885
No 102
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=3e-11 Score=132.39 Aligned_cols=149 Identities=26% Similarity=0.368 Sum_probs=102.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
..+|++++|++++++.|.-.+.....+. ...-++|||||||.|||+||.-||+++|.++...+.+.+...
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 3579999999999999988776544332 234589999999999999999999999999998887766322
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH-hcCCCcC------CCCCEEEEEEeC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN-WDGLRTK------DKERVLVLAATN 1097 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~-Ldgl~~k------~~~kVLVIaTTN 1097 (1116)
.-+..++.... ..+|+|||||++|. ....+.+-..+..|..- +-|..+. +-.++-+||||.
T Consensus 92 -----gDlaaiLt~Le--~~DVLFIDEIHrl~-----~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 92 -----GDLAAILTNLE--EGDVLFIDEIHRLS-----PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -----hhHHHHHhcCC--cCCeEEEehhhhcC-----hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 23444444332 34799999999983 22223332222222111 1111110 123678999999
Q ss_pred CCCCCcHHHHhhcCCeEE
Q 001244 1098 RPFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1098 rp~~LD~ALlRRF~r~I~ 1115 (1116)
+..+|...|++||.....
T Consensus 160 r~G~lt~PLrdRFGi~~r 177 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQR 177 (332)
T ss_pred ccccccchhHHhcCCeee
Confidence 999999999999986543
No 103
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.9e-10 Score=136.06 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=94.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++++|++.+...|...+.. + +.+..+||+||+|||||++|+.+|+.++..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~----------~---ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS----------G---KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999887752 2 223468999999999999999999998652
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
|+.++.+.- .....++.+.+.+. .....|+||||+|.|- ...++.||
T Consensus 81 C~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 333333211 11233444444333 2345699999999882 34567777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. ..++++|.+|+.++.|.++|++|+.
T Consensus 143 KtLEEP----p~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 143 KTLEEP----PAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred HHhhcC----CCceEEEeecCChhhccHHHHhhhh
Confidence 777552 4678888899989999999999964
No 104
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.7e-10 Score=139.65 Aligned_cols=132 Identities=21% Similarity=0.280 Sum_probs=95.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|++|+|++.+++.|...+.. + +....+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~----------g---RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ----------Q---RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh----------C---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999988762 2 23357899999999999999999999965
Q ss_pred ---------------eeeEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHHHHH
Q 001244 1011 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1116)
Q Consensus 1011 ---------------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~I 1071 (1116)
.+++++... ......++++.+.+. .....|+||||+|.|- ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 223333221 111234455554443 2234699999999882 345
Q ss_pred HHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1072 lneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
.|.||..|+.- ..++++|.+||.+..|.+.|++|+.
T Consensus 141 aNALLKTLEEP----P~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 141 FNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred HHHHHHhhccC----CCCceEEEEeCChHhhhhHHHHHHH
Confidence 67788777653 4578888899999999999999763
No 105
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.15 E-value=9.1e-10 Score=138.26 Aligned_cols=144 Identities=20% Similarity=0.343 Sum_probs=99.8
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc--------
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1021 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-------- 1021 (1116)
++.|++++|+.+.+++....... ......++|+||||+|||++++.||..++.+|++++++...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 48999999999998776422211 11224699999999999999999999999999999877542
Q ss_pred -cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-----------cCCCCC
Q 001244 1022 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----------TKDKER 1089 (1116)
Q Consensus 1022 -sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-----------~k~~~k 1089 (1116)
..|.|.....+.+.+..+.... .||||||||.+...... . ....|+..+|.-. +.+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g-~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG-D-------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC-C-------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 2355555556666666554334 48999999998543211 1 1234444444210 123468
Q ss_pred EEEEEEeCCCCCCcHHHHhhcC
Q 001244 1090 VLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1090 VLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+++|||+|.. .|+++|++||.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~~ 486 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRME 486 (784)
T ss_pred eEEEEcCCCC-CCCHHHhccee
Confidence 9999999987 59999999995
No 106
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.14 E-value=2.3e-10 Score=128.31 Aligned_cols=128 Identities=27% Similarity=0.523 Sum_probs=90.0
Q ss_pred CCCcccccCcHHHHHH---HHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe---eeEEecc
Q 001244 945 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 1018 (1116)
Q Consensus 945 ~vtfddIgGldevk~~---L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p---fI~Is~s 1018 (1116)
..+++|++|+++...+ |+.+|. ++ ...+++|+||||||||+||+.|+....-+ ||+++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie----------q~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE----------QN----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH----------cC----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 3578888888876533 333333 22 23589999999999999999999998554 7777754
Q ss_pred ccccccccchHHHHHHHHHHHhcC-----CCeEEEEccccccccCCCCCchhHHHHHHHH-HHHHHhcCCCcCCCCCEEE
Q 001244 1019 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKN-EFMVNWDGLRTKDKERVLV 1092 (1116)
Q Consensus 1019 eL~sk~~GesEk~Ir~lF~~A~k~-----sPsIIfIDEID~Llg~R~~~~~~~~lr~Iln-eLL~~Ldgl~~k~~~kVLV 1092 (1116)
. ...+.++.+|+.+++. ...|||||||+++ + +..| .|| +.-++..|++
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----N--------ksQQD~fL------P~VE~G~I~l 253 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----N--------KSQQDTFL------PHVENGDITL 253 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----h--------hhhhhccc------ceeccCceEE
Confidence 3 2345788899888653 3579999999976 2 2222 333 2224567888
Q ss_pred EEEe--CCCCCCcHHHHhhcCC
Q 001244 1093 LAAT--NRPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1093 IaTT--Nrp~~LD~ALlRRF~r 1112 (1116)
||+| |..+.|..||++|...
T Consensus 254 IGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred EecccCCCccchhHHHHhccce
Confidence 8877 5667899999999853
No 107
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=2.9e-10 Score=139.11 Aligned_cols=132 Identities=21% Similarity=0.280 Sum_probs=94.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|+|++.+++.|...+.. + +....+||+||+|||||++|+++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~----------g---RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG----------G---RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999988752 2 233578999999999999999999998642
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
+++++..+ ......++.+++.+.. ....||||||+|.|- ....|.||
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHH
Confidence 33333221 1122345556655432 234699999999882 23456677
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..|+.. ..++.||.+||.++.|.+.|++|+.
T Consensus 141 KtLEEP----P~~v~FILaTtd~~KIp~TIrSRCq 171 (830)
T PRK07003 141 KTLEEP----PPHVKFILATTDPQKIPVTVLSRCL 171 (830)
T ss_pred HHHHhc----CCCeEEEEEECChhhccchhhhheE
Confidence 666653 3578899999999999999999873
No 108
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=3.9e-10 Score=134.43 Aligned_cols=132 Identities=19% Similarity=0.286 Sum_probs=92.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
+.+|++++|++.+++.|...+.. + +.+..+||+||||||||++|+++|+.++.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~----------~---~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK----------N---SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999998888877652 2 23357999999999999999999999864
Q ss_pred ----------eeeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1011 ----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
.++.++.+.- .....++++.+.+... ...||||||++.|. ...++.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 3445544321 1123455555554422 34699999999882 22345566
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. +..+++|++|+.+..|.++|++|+.
T Consensus 139 k~LE~p----~~~vv~Ilattn~~kl~~~L~SR~~ 169 (472)
T PRK14962 139 KTLEEP----PSHVVFVLATTNLEKVPPTIISRCQ 169 (472)
T ss_pred HHHHhC----CCcEEEEEEeCChHhhhHHHhcCcE
Confidence 666543 3457777777778899999999985
No 109
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.12 E-value=2e-10 Score=101.04 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=59.0
Q ss_pred EEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEEEc
Q 001244 154 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1116)
Q Consensus 154 ~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdEi~f~ 224 (1116)
|+|||+..||+.|+|+.+|..||.|...+. ..++|++. +.||| +|||+++.++..+.|..||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999997644 33899996 68898 799999999999999999999985
No 110
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.11 E-value=2.9e-10 Score=132.99 Aligned_cols=148 Identities=22% Similarity=0.362 Sum_probs=97.1
Q ss_pred ccCcHHHHHHHHHHHHccccChhhh----hcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-cccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELF----CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWF 1025 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf----~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-sk~~ 1025 (1116)
++|++++++.+..++....++-... ...++.....++||+||||||||++|++||..++.+|+.+++..+. ..|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 6899999999987764222211100 0001112236899999999999999999999999999999988875 3577
Q ss_pred cch-HHHHHHHHHHH----hcCCCeEEEEccccccccCCCCCchh-HH-HHHHHHHHHHHhcCCCc---------CCCCC
Q 001244 1026 GEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLRT---------KDKER 1089 (1116)
Q Consensus 1026 Ges-Ek~Ir~lF~~A----~k~sPsIIfIDEID~Llg~R~~~~~~-~~-lr~IlneLL~~Ldgl~~---------k~~~k 1089 (1116)
|.. +..+..++..+ .+..++||||||||.+..++.+.... .+ ...+.+.||..|+|... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 875 34445544432 23467899999999997644332111 11 12467777877766431 12345
Q ss_pred EEEEEEeCC
Q 001244 1090 VLVLAATNR 1098 (1116)
Q Consensus 1090 VLVIaTTNr 1098 (1116)
.++|.|+|-
T Consensus 239 ~i~i~TsNi 247 (413)
T TIGR00382 239 FIQIDTSNI 247 (413)
T ss_pred eEEEEcCCc
Confidence 788999886
No 111
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=7.5e-11 Score=134.19 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=98.8
Q ss_pred CCceeeecccCCCCceeEecceEEEeccCccceeecCCCCCccceEEEEe----------e-cCCcceEEEEEecCcceE
Q 001244 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------E-NGGPSGALLEITGGKGEV 200 (1116)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~----------~-~~g~~~a~Le~~~~~G~v 200 (1116)
.||+||+-..-..+++.+.+++|||||+..||+.++.+.+|+.|-++... . .+....+||+|+++|||
T Consensus 44 ~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT- 122 (475)
T KOG0615|consen 44 KPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGT- 122 (475)
T ss_pred cchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcc-
Confidence 38999999999999999999999999999999999999999988855433 2 34456899999999999
Q ss_pred EECCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcccCCCC
Q 001244 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAP 244 (1116)
Q Consensus 201 ~vNg~~~~k~~~~~L~~GdEi~f~~~~~~ayifq~l~~~~~~~~ 244 (1116)
+||-..++||.+-.|+|||||.++.+.+++++|.+++.+....+
T Consensus 123 ~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~~ 166 (475)
T KOG0615|consen 123 FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKVP 166 (475)
T ss_pred cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccCc
Confidence 79999999999999999999999999999999999866654433
No 112
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.11 E-value=5.1e-10 Score=131.52 Aligned_cols=127 Identities=26% Similarity=0.492 Sum_probs=88.9
Q ss_pred CCcccccCcHHHHHH---HHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 946 vtfddIgGldevk~~---L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
.+|++++|++..... |.+.+.. . ...++||+||||||||++|++||+.++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~----------~----~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA----------G----RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc----------C----CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999988665 7666641 1 12479999999999999999999999999999987532
Q ss_pred ccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEe--
Q 001244 1023 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTT-- 1096 (1116)
....++.++..+.. ....||||||||.+. ....+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhc------CcEEEEEeCCC
Confidence 12345555555532 245899999999873 1222334444432 356666665
Q ss_pred CCCCCCcHHHHhhcC
Q 001244 1097 NRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1097 Nrp~~LD~ALlRRF~ 1111 (1116)
|....+++++++|+.
T Consensus 130 n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 130 NPSFEVNPALLSRAQ 144 (413)
T ss_pred ChhhhccHHHhccce
Confidence 334579999999983
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.10 E-value=8.7e-10 Score=124.24 Aligned_cols=137 Identities=23% Similarity=0.236 Sum_probs=92.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
+.+|+++.|.+.+++.+...+. .+ +.+..+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~----------~~---~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVK----------KG---RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHh----------cC---CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 5689999999999999988775 12 12345667999999999999999999999999998876 21
Q ss_pred ccchHHHHHHHHHHHh-cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc
Q 001244 1025 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~-k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD 1103 (1116)
.......+........ ...+.||||||+|.+.. .. .+.. |...++.. ..++.+|+|||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~-~~~~---L~~~le~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------AD-AQRH---LRSFMEAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HH-HHHH---HHHHHHhc----CCCceEEEEcCChhhch
Confidence 1111112222111111 12468999999997721 11 1222 22223332 24567888999999999
Q ss_pred HHHHhhcCC
Q 001244 1104 EAVVRRLPR 1112 (1116)
Q Consensus 1104 ~ALlRRF~r 1112 (1116)
+++++||..
T Consensus 146 ~~l~sR~~~ 154 (316)
T PHA02544 146 EPLRSRCRV 154 (316)
T ss_pred HHHHhhceE
Confidence 999999953
No 114
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.10 E-value=8.5e-11 Score=138.36 Aligned_cols=149 Identities=26% Similarity=0.357 Sum_probs=111.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccc-
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 1020 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL- 1020 (1116)
..+|++|.|.......+.+.+.. ..+....|||.|.+||||..+|++|++.+ +.|||.++|+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999999888888776652 13344689999999999999999999988 789999999875
Q ss_pred ----ccccccchHH--------HHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCC
Q 001244 1021 ----TSKWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1116)
Q Consensus 1021 ----~sk~~GesEk--------~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~ 1088 (1116)
.+.+||.... --..+|+.|.. +.||+|||..| +...|..+.+++|+--...-|-....+.
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCceee
Confidence 3444553211 13458888877 89999999988 4456667777777665554454444456
Q ss_pred CEEEEEEeCCCCCCcHHHHh-hcCCeEE
Q 001244 1089 RVLVLAATNRPFDLDEAVVR-RLPRRTC 1115 (1116)
Q Consensus 1089 kVLVIaTTNrp~~LD~ALlR-RF~r~I~ 1115 (1116)
.|.||||||+ .|..++.. ||++.+|
T Consensus 381 DVRIIAATN~--nL~~~i~~G~FReDLY 406 (560)
T COG3829 381 DVRIIAATNR--NLEKMIAEGTFREDLY 406 (560)
T ss_pred EEEEEeccCc--CHHHHHhcCcchhhhe
Confidence 7999999998 77777777 7776654
No 115
>PRK04195 replication factor C large subunit; Provisional
Probab=99.08 E-value=8.9e-10 Score=131.92 Aligned_cols=136 Identities=28% Similarity=0.435 Sum_probs=93.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
..+++++.|++.+++.|..++.... ++ .+.+.+||+||||||||++|+++|++++++++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------KG---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------cC---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 5689999999999999998875321 22 235789999999999999999999999999999998764321
Q ss_pred ccchHHHHHHHHHHHhc------CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC
Q 001244 1025 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k------~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr 1098 (1116)
..+..+...+.. ..+.||||||+|.|.+.... ..++.|+..++. .+..||+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~--------~~~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR--------GGARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch--------hHHHHHHHHHHc------CCCCEEEeccC
Confidence 223333333322 24679999999998542111 122334444432 23456778898
Q ss_pred CCCCcH-HHHhhc
Q 001244 1099 PFDLDE-AVVRRL 1110 (1116)
Q Consensus 1099 p~~LD~-ALlRRF 1110 (1116)
+..+.. .+++|+
T Consensus 140 ~~~~~~k~Lrsr~ 152 (482)
T PRK04195 140 PYDPSLRELRNAC 152 (482)
T ss_pred ccccchhhHhccc
Confidence 888887 565554
No 116
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.06 E-value=8.1e-10 Score=103.15 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=82.8
Q ss_pred ceeeecccC--CCCceeEec-ceEEEeccCcc-ceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCC
Q 001244 134 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (1116)
Q Consensus 134 W~rL~s~~~--~~p~~~i~~-~~~t~G~~~~c-d~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k 209 (1116)
|+.|..+.. ..+.+.|.. ..|+|||+..| |+.|.|+.+|..||.|.....+ ...+++..+.||+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCe-EECCEECCC
Confidence 567777776 677889998 99999999999 9999999999999999976433 3478889999999 699999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEee
Q 001244 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234 (1116)
Q Consensus 210 ~~~~~L~~GdEi~f~~~~~~ayifq 234 (1116)
+.+++|..||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 9999999999999976 45555554
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=1.2e-09 Score=127.51 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=93.6
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee--------------
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------------- 1012 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf-------------- 1012 (1116)
.|++|+|++.+++.|...+.....+...+ + .+.+..+||+||+|+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 48899999999999999987543322211 1 12347899999999999999999999874431
Q ss_pred ---------eEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHh
Q 001244 1013 ---------INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1116)
Q Consensus 1013 ---------I~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~L 1079 (1116)
+.+.... . .-....++.+++.++.. ...|+||||+|.|- ....|.|+..|
T Consensus 79 ~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHh
Confidence 1111110 1 01233477888877653 23599999999982 22346677777
Q ss_pred cCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1080 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1080 dgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+..+ .++++|.+|+.++.|.++|++|+.
T Consensus 142 Eep~----~~~~fIL~a~~~~~llpTIrSRc~ 169 (394)
T PRK07940 142 EEPP----PRTVWLLCAPSPEDVLPTIRSRCR 169 (394)
T ss_pred hcCC----CCCeEEEEECChHHChHHHHhhCe
Confidence 6532 234444445558999999999874
No 118
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=1.2e-09 Score=104.09 Aligned_cols=124 Identities=32% Similarity=0.453 Sum_probs=82.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCe---eeEEecccccccc--------------ccchHHHHHHHHHHHhcCCCeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSKW--------------FGEGEKYVKAVFSLASKIAPSVV 1047 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~p---fI~Is~seL~sk~--------------~GesEk~Ir~lF~~A~k~sPsII 1047 (1116)
..++|+||||||||++++++|..+... ++.+++......+ ........+.++..++...+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999664 8888877543321 12345677889999998888999
Q ss_pred EEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC-CCCCcHHHHhhcCCeEEC
Q 001244 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1048 fIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr-p~~LD~ALlRRF~r~I~V 1116 (1116)
||||++.+...... ............... ....+..+|+++|. ....+..+.+|++.++.+
T Consensus 83 iiDei~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 144 (148)
T smart00382 83 ILDEITSLLDAEQE-----ALLLLLEELRLLLLL---KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVL 144 (148)
T ss_pred EEECCcccCCHHHH-----HHHHhhhhhHHHHHH---HhcCCCEEEEEeCCCccCchhhhhhccceEEEe
Confidence 99999988532111 100000000000000 12356788999986 445666666688887753
No 119
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=1.3e-09 Score=132.27 Aligned_cols=132 Identities=22% Similarity=0.279 Sum_probs=93.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|++++|++.+++.|...+. .+ +....+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~----------~g---rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALE----------RG---RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------cC---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 4689999999999999988875 22 23468899999999999999999999865
Q ss_pred ----------eeeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1011 ----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
.++.++.++- .....++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 3444444321 122345555554432 234699999999882 23456677
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. ...+.+|.+|+.+..+...+++|+.
T Consensus 140 KtLEEP----P~~v~FILaTtd~~kIp~TIlSRCq 170 (702)
T PRK14960 140 KTLEEP----PEHVKFLFATTDPQKLPITVISRCL 170 (702)
T ss_pred HHHhcC----CCCcEEEEEECChHhhhHHHHHhhh
Confidence 666653 3456777778888888899988774
No 120
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.04 E-value=4.8e-10 Score=135.67 Aligned_cols=61 Identities=34% Similarity=0.567 Sum_probs=48.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeE
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~ 1014 (1116)
..+|+++.|.+..++.+...+. ...+.++||+||||||||++|+++++++ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~--------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALC--------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 3579999999999988876542 1123579999999999999999998753 468999
Q ss_pred Eeccc
Q 001244 1015 ISMSS 1019 (1116)
Q Consensus 1015 Is~se 1019 (1116)
++|..
T Consensus 127 id~~~ 131 (531)
T TIGR02902 127 IDATT 131 (531)
T ss_pred Ecccc
Confidence 99864
No 121
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=1.5e-10 Score=115.10 Aligned_cols=112 Identities=26% Similarity=0.420 Sum_probs=70.5
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc--ccccchH------HHHHHHHHHHhcCCCeEEEEcccccccc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGE------KYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s--k~~GesE------k~Ir~lF~~A~k~sPsIIfIDEID~Llg 1057 (1116)
+|||+||||||||+||+.+|+.++.+++.+.+..... .++|.-. ......+..+.+ .+.++|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 5899999999999999999999999999998875321 1111100 000001111111 46899999999651
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCcC---------CCC------CEEEEEEeCCCC----CCcHHHHhhc
Q 001244 1058 RRENPGEHEAMRKMKNEFMVNWDGLRTK---------DKE------RVLVLAATNRPF----DLDEAVVRRL 1110 (1116)
Q Consensus 1058 ~R~~~~~~~~lr~IlneLL~~Ldgl~~k---------~~~------kVLVIaTTNrp~----~LD~ALlRRF 1110 (1116)
..+++.|+..++.-... ... ++.||||+|... .|++++++||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 34445555554432110 011 389999999998 8999999998
No 122
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=2.1e-10 Score=133.61 Aligned_cols=149 Identities=23% Similarity=0.311 Sum_probs=111.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~ 1021 (1116)
...+..|+|...++.++.+.|... .+....|||.|.+||||..+|++|++.+ +-|||+++|+.+-
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 567788999999999988888642 2233589999999999999999999998 7899999998762
Q ss_pred -----cccccch-------HHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCC
Q 001244 1022 -----SKWFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1116)
Q Consensus 1022 -----sk~~Ges-------Ek~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~k 1089 (1116)
+..||.- ...-+.-|+.|.+ +.||+|||..| +..-|..+.+++|+--.+.-|-...-...
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEEE
Confidence 3444432 2233456777777 89999999988 34556667777776544444433333456
Q ss_pred EEEEEEeCCCCCCcHHHHh-hcCCeEE
Q 001244 1090 VLVLAATNRPFDLDEAVVR-RLPRRTC 1115 (1116)
Q Consensus 1090 VLVIaTTNrp~~LD~ALlR-RF~r~I~ 1115 (1116)
|.||||||+ +|.+++.. +|+..+|
T Consensus 359 VRiIAATNR--DL~~~V~~G~FRaDLY 383 (550)
T COG3604 359 VRVIAATNR--DLEEMVRDGEFRADLY 383 (550)
T ss_pred EEEEeccch--hHHHHHHcCcchhhhh
Confidence 899999999 88888888 8876554
No 123
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.9e-09 Score=134.31 Aligned_cols=131 Identities=23% Similarity=0.261 Sum_probs=91.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf------------ 1012 (1116)
..+|++|+|++.+++.|+.++.. + +....+||+||||||||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~----------~---rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ----------Q---RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 46899999999999999887752 2 2235679999999999999999999996531
Q ss_pred ------------eEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1013 ------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1013 ------------I~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
+.++..+ ......++.+...+.. ....||||||++.|- ...++.||
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALL 140 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALL 140 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 1111110 0112334555544432 234699999999882 45667777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..|+.. ...+++|++|+.+..|.+.|++|+
T Consensus 141 KtLEEP----P~~vrFILaTTe~~kLl~TIlSRC 170 (944)
T PRK14949 141 KTLEEP----PEHVKFLLATTDPQKLPVTVLSRC 170 (944)
T ss_pred HHHhcc----CCCeEEEEECCCchhchHHHHHhh
Confidence 777653 356777777888888999999876
No 124
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=1.2e-09 Score=113.91 Aligned_cols=115 Identities=26% Similarity=0.355 Sum_probs=76.6
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHhCC----eeeEEeccccccccccchHHHHHHHHHHH----hcCCCeEEEEcccc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVD 1053 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~elg~----pfI~Is~seL~sk~~GesEk~Ir~lF~~A----~k~sPsIIfIDEID 1053 (1116)
+|...+||.||+|+|||.||+++|..+.. +++.++++++... ++.+..+..++..+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 35678999999999999999999999997 9999999988661 11111112211111 01112499999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHhcCCCcC-------CCCCEEEEEEeCCC
Q 001244 1054 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 1099 (1116)
Q Consensus 1054 ~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k-------~~~kVLVIaTTNrp 1099 (1116)
....+ ...+....-..+++.||..|++..-. +-.++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 99754 23333444457888888888654322 23579999999944
No 125
>PLN03025 replication factor C subunit; Provisional
Probab=99.02 E-value=2.3e-09 Score=121.78 Aligned_cols=131 Identities=25% Similarity=0.324 Sum_probs=85.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-C----CeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-g----~pfI~Is~se 1019 (1116)
+.+|+++.|++++++.|+.++.. +. ..++||+||||||||++|+++|+++ + ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~~----~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------GN----MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------CC----CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 56899999999999988876541 11 1369999999999999999999998 2 2456666554
Q ss_pred cccccccchHHHHHHHHHH-Hh------cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEE
Q 001244 1020 ITSKWFGEGEKYVKAVFSL-AS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~-A~------k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLV 1092 (1116)
..+. ..++..... +. .....||+|||+|.|.. .. .+.|+..++.. .....+
T Consensus 75 ~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----~a-------q~aL~~~lE~~----~~~t~~ 132 (319)
T PLN03025 75 DRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----GA-------QQALRRTMEIY----SNTTRF 132 (319)
T ss_pred cccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----HH-------HHHHHHHHhcc----cCCceE
Confidence 3221 122222211 11 12357999999998831 11 23333334332 233556
Q ss_pred EEEeCCCCCCcHHHHhhcC
Q 001244 1093 LAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1093 IaTTNrp~~LD~ALlRRF~ 1111 (1116)
|.+||....+.++|++|..
T Consensus 133 il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred EEEeCCccccchhHHHhhh
Confidence 7788888889999998763
No 126
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.02 E-value=2.2e-09 Score=131.54 Aligned_cols=131 Identities=24% Similarity=0.316 Sum_probs=93.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|+|++.+++.|...+.. +. -...+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~----------~r---l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL----------GR---LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------CC---CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 46899999999999999887762 22 23568999999999999999999999652
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
|+.++..+ ......++.+...+. .....|+||||+|.|- ....|.||
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHH
Confidence 23333321 011233455444433 2234699999999882 34567777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..|+.. ...+.+|.+|+.+..|.+.|++|+
T Consensus 141 KtLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC 170 (647)
T PRK07994 141 KTLEEP----PEHVKFLLATTDPQKLPVTILSRC 170 (647)
T ss_pred HHHHcC----CCCeEEEEecCCccccchHHHhhh
Confidence 777663 356777777888899999999986
No 127
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.8e-09 Score=130.00 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++++|++.+++.|...+.. + +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~----------~---~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ----------Q---YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh----------C---CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999988852 2 223568999999999999999999999542
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
+++++.+. ......++.+...+.. ....|+||||+|.|- ....|.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 44454432 1122345555554432 233699999999883 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..|+.. ...+.+|.+|+.+..+.+.|++|+
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~SRc 170 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLSRC 170 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHHHh
Confidence 777664 345777777788888888898875
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.02 E-value=1.5e-09 Score=118.39 Aligned_cols=135 Identities=26% Similarity=0.421 Sum_probs=101.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~ 1021 (1116)
.+.++++.|++.+++.|.+.... |..+ .|..++||+|+.|||||++++|+.+++ |..+|.|.-..|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 57899999999999999887754 3333 467899999999999999999999988 7888888766552
Q ss_pred cccccchHHHHHHHHHHHhc-CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1022 SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1022 sk~~GesEk~Ir~lF~~A~k-~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
.+..++...+. ..+-|||+|++. | ...+ .-...|...|+|.....+.+|+|.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d-----~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGD-----TEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCc-----HHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 34555555543 345799999874 2 1121 2246777888888777789999999999887
Q ss_pred CCcHHHHhh
Q 001244 1101 DLDEAVVRR 1109 (1116)
Q Consensus 1101 ~LD~ALlRR 1109 (1116)
.|.+.+..|
T Consensus 153 Lv~E~~~d~ 161 (249)
T PF05673_consen 153 LVPESFSDR 161 (249)
T ss_pred ccchhhhhc
Confidence 766655443
No 129
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.00 E-value=1.2e-10 Score=121.16 Aligned_cols=132 Identities=21% Similarity=0.367 Sum_probs=79.8
Q ss_pred cCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-----c
Q 001244 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----K 1023 (1116)
Q Consensus 952 gGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-----k 1023 (1116)
+|.+..++.+.+.+.... .....|||+|++||||+++|++|++.. +.||+.++|+.+.. .
T Consensus 2 iG~s~~m~~~~~~~~~~a------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAA------------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp S--SHHHHHHHHHHHHHT------------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHh------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 455556666665554321 122579999999999999999999987 57999999987632 2
Q ss_pred cccchH-------HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcC-------CCcCCCCC
Q 001244 1024 WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-------LRTKDKER 1089 (1116)
Q Consensus 1024 ~~GesE-------k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldg-------l~~k~~~k 1089 (1116)
.+|... ..-..+|+.|.+ ++||||||+.|- ..+...|+..++. -......+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLP------------PELQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hhccccccccccccccCCceeeccc---eEEeecchhhhH------------HHHHHHHHHHHhhchhcccccccccccc
Confidence 344321 112368888877 899999999982 2233333333331 11112347
Q ss_pred EEEEEEeCCCCCCcHHHHh-hcCC
Q 001244 1090 VLVLAATNRPFDLDEAVVR-RLPR 1112 (1116)
Q Consensus 1090 VLVIaTTNrp~~LD~ALlR-RF~r 1112 (1116)
+.||+||+. +|.+.+.. +|..
T Consensus 135 ~RiI~st~~--~l~~~v~~g~fr~ 156 (168)
T PF00158_consen 135 VRIIASTSK--DLEELVEQGRFRE 156 (168)
T ss_dssp EEEEEEESS---HHHHHHTTSS-H
T ss_pred ceEEeecCc--CHHHHHHcCCChH
Confidence 999999997 55555544 5543
No 130
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=4.1e-09 Score=122.03 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=90.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
+.+|+++.|++.+++.+...+.. + +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~----------~---~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL----------G---RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc----------C---CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999887752 2 233568999999999999999999998532
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++.+. ......++.+...+... ...|+||||+|.|- ....+.|+
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 01223456666555432 23599999999882 23345666
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. +..+.+|.+|+.++.|.++|++|+.
T Consensus 141 k~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc~ 171 (363)
T PRK14961 141 KTLEEP----PQHIKFILATTDVEKIPKTILSRCL 171 (363)
T ss_pred HHHhcC----CCCeEEEEEcCChHhhhHHHHhhce
Confidence 666553 3456777777878889999998873
No 131
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=4.6e-09 Score=128.56 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=93.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999988762 2334689999999999999999999998543
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++.+. ......++.++..+.. ....||||||+|.|- ...++.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222111 1223456666665432 234699999999772 23456677
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..|+.. ...+.+|.+|+.+..+.+.|++|+
T Consensus 141 KtLEEP----p~~v~fILaTtd~~kL~~TIrSRC 170 (709)
T PRK08691 141 KTLEEP----PEHVKFILATTDPHKVPVTVLSRC 170 (709)
T ss_pred HHHHhC----CCCcEEEEEeCCccccchHHHHHH
Confidence 777653 345778888888889999998876
No 132
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.96 E-value=2.4e-09 Score=118.59 Aligned_cols=114 Identities=22% Similarity=0.247 Sum_probs=72.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc------cccccccchHHH-HH-------------------HHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-VK-------------------AVFSL 1038 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se------L~sk~~GesEk~-Ir-------------------~lF~~ 1038 (1116)
..+||+||||||||++|+++|..+|.+|+.+++.. +++.|.+..... +. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998754 333333221111 11 11122
Q ss_pred HhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------cC-----CCCCEEEEEEeCCCC-----C
Q 001244 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK-----DKERVLVLAATNRPF-----D 1101 (1116)
Q Consensus 1039 A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~k-----~~~kVLVIaTTNrp~-----~ 1101 (1116)
|.+ ...+|+||||+.+ + ..+.+.|+..|+... .. .+..+.||+|+|... .
T Consensus 102 A~~-~g~~lllDEi~r~-----~-------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----K-------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhC-----C-------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 3479999999976 2 123333333333211 00 123678999999763 5
Q ss_pred CcHHHHhhcC
Q 001244 1102 LDEAVVRRLP 1111 (1116)
Q Consensus 1102 LD~ALlRRF~ 1111 (1116)
+++++++||-
T Consensus 169 l~~aL~~R~~ 178 (262)
T TIGR02640 169 TQDALLDRLI 178 (262)
T ss_pred ccHHHHhhcE
Confidence 7999999984
No 133
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.95 E-value=3.8e-09 Score=124.10 Aligned_cols=117 Identities=26% Similarity=0.337 Sum_probs=74.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCC--e-----eeEEecc----cccccc----ccch--HHHHHHHHHHHhcC--CCe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS----SITSKW----FGEG--EKYVKAVFSLASKI--APS 1045 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~--p-----fI~Is~s----eL~sk~----~Ges--Ek~Ir~lF~~A~k~--sPs 1045 (1116)
++++|+||||||||++|+++|..+.. . ++.+... +++..+ .|.. ...+.++...|... .|.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 47999999999999999999998842 1 2222211 122111 1111 11234445566543 479
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC------------------CcCCCCCEEEEEEeCCCC----CCc
Q 001244 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL------------------RTKDKERVLVLAATNRPF----DLD 1103 (1116)
Q Consensus 1046 IIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl------------------~~k~~~kVLVIaTTNrp~----~LD 1103 (1116)
+||||||++- + +.+++.+++..|+.- .-.-+.++.||||+|..+ .||
T Consensus 275 vliIDEINRa-----n------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 275 VFIIDEINRA-----N------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred EEEEehhhcc-----C------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 9999999854 1 234455555554421 012256899999999887 799
Q ss_pred HHHHhhcCC
Q 001244 1104 EAVVRRLPR 1112 (1116)
Q Consensus 1104 ~ALlRRF~r 1112 (1116)
.|++|||..
T Consensus 344 ~AlrRRF~f 352 (459)
T PRK11331 344 YALRRRFSF 352 (459)
T ss_pred HHHHhhhhe
Confidence 999999954
No 134
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=4.8e-09 Score=132.03 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=91.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|+|++.+++.|...+.. + +....+||+||+|||||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~----------~---ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS----------G---RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh----------C---CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999888752 2 223568999999999999999999999641
Q ss_pred -------------eeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH
Q 001244 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1116)
Q Consensus 1012 -------------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~ 1078 (1116)
|+.++..... .+......+..++.........|+||||+|.|- ....|.||..
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~NaLLK~ 143 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNALLKI 143 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHHHHHH
Confidence 3333322110 011111122222222233455799999999982 2445677777
Q ss_pred hcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1079 Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
|+.. ...+++|++|+.++.|-+.|++|..
T Consensus 144 LEEp----P~~~~fIl~tt~~~kLl~TIrSRc~ 172 (824)
T PRK07764 144 VEEP----PEHLKFIFATTEPDKVIGTIRSRTH 172 (824)
T ss_pred HhCC----CCCeEEEEEeCChhhhhHHHHhhee
Confidence 7764 3467777778888889999998853
No 135
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=6e-09 Score=125.08 Aligned_cols=132 Identities=18% Similarity=0.280 Sum_probs=93.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++++|++.+++.|...+.. + +.+..+||+||+|||||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~----------~---ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN----------D---RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 56899999999999999877652 2 234689999999999999999999998642
Q ss_pred ---------------eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHH
Q 001244 1012 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 1072 (1116)
Q Consensus 1012 ---------------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~Il 1072 (1116)
++.++..+ ......++.+++.+... ...||||||++.|. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 12222111 12345677777776532 24699999999882 2335
Q ss_pred HHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1073 neLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+.|+..++.. ...+++|.+|+.++.|.++|++|+.
T Consensus 146 naLLk~LEep----p~~~vfI~aTte~~kI~~tI~SRc~ 180 (507)
T PRK06645 146 NALLKTLEEP----PPHIIFIFATTEVQKIPATIISRCQ 180 (507)
T ss_pred HHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHhcce
Confidence 5666666642 3567777778888889999998763
No 136
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=5.2e-09 Score=124.91 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=95.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|+|++|++.+++.|..++.. + +.+..+||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~----------~---ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL----------N---KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999877652 2 33468999999999999999999997632
Q ss_pred ----------eeeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1011 ----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
.+++++.++- .....++.+.+.+... ...|+||||++.|- ...++.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455555421 1234566666665432 34699999999882 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++..+ ..+.+|.+|+.+..|.+.|++|+.
T Consensus 138 K~LEePp----~~v~fIlatte~~Kl~~tI~SRc~ 168 (491)
T PRK14964 138 KTLEEPA----PHVKFILATTEVKKIPVTIISRCQ 168 (491)
T ss_pred HHHhCCC----CCeEEEEEeCChHHHHHHHHHhhe
Confidence 7777643 457777777888889999998774
No 137
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.94 E-value=2.9e-09 Score=118.12 Aligned_cols=136 Identities=24% Similarity=0.302 Sum_probs=91.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC------eeeEEecc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA------NFINISMS 1018 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~------pfI~Is~s 1018 (1116)
..+|+++.|++.+++.|...+.. + -..++|||||||||||+.|+++|.++.. .+...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-----------~---~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-----------R---ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-----------c---CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 56899999999999999988852 1 1237999999999999999999999954 22333444
Q ss_pred cccccccc-chHHHHHHHHHHH-----hcCCC-eEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEE
Q 001244 1019 SITSKWFG-EGEKYVKAVFSLA-----SKIAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1116)
Q Consensus 1019 eL~sk~~G-esEk~Ir~lF~~A-----~k~sP-sIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVL 1091 (1116)
...+..++ +..+...++-..- +.++| .||+|||.|.|. ...++.|...|+.. ...+.
T Consensus 98 derGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt------------sdaq~aLrr~mE~~----s~~tr 161 (346)
T KOG0989|consen 98 DERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT------------SDAQAALRRTMEDF----SRTTR 161 (346)
T ss_pred ccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh------------HHHHHHHHHHHhcc----ccceE
Confidence 44333221 1122222221111 12233 699999999983 23344555555553 35789
Q ss_pred EEEEeCCCCCCcHHHHhhc
Q 001244 1092 VLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1092 VIaTTNrp~~LD~ALlRRF 1110 (1116)
+|..||..+.|...|.+|.
T Consensus 162 FiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 162 FILICNYLSRIIRPLVSRC 180 (346)
T ss_pred EEEEcCChhhCChHHHhhH
Confidence 9999999999988888854
No 138
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2e-09 Score=122.15 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--ChhhHHHHHHHHhcC-------CCCEEEEeeccCCCcccccCCCCCc
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGL 759 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~--~~e~~~~lk~~Le~L-------~g~VviIgS~~~~d~~~~~~~~~~~ 759 (1116)
.|+.||+-+.. + ..-++|||||.|.||+. ...+.....+.|.+| +..++++-++|+|..
T Consensus 430 kiH~lFDWakk-S-~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd---------- 497 (630)
T KOG0742|consen 430 KIHKLFDWAKK-S-RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD---------- 497 (630)
T ss_pred HHHHHHHHHhh-c-ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccc----------
Confidence 67888887744 1 46799999999999994 344555677777777 447888899997755
Q ss_pred eeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHH--hhchhhhhcc-cch
Q 001244 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL--ERDVETLKGQ-SNI 836 (1116)
Q Consensus 760 ~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~ql--e~~Lpdlk~R-~nI 836 (1116)
||.| ++.+|...|+|++|-+|++.+-+..-| ++-.|+..+. -..
T Consensus 498 ------------lDsA---------------------V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~ 544 (630)
T KOG0742|consen 498 ------------LDSA---------------------VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKW 544 (630)
T ss_pred ------------hhHH---------------------HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchh
Confidence 6654 777888999999999999977333222 3334443432 111
Q ss_pred hhhhhh----hhcCC-CCCCCchhhhccccccchhhHHHHHH
Q 001244 837 ISIRSV----LSRNG-LDCVDLESLCIKDQTLTTEGVEKIVG 873 (1116)
Q Consensus 837 l~Iht~----l~~~~-lecvDLeeLai~dk~LsgadIEkIV~ 873 (1116)
.++-.+ +.-.+ +-..-+.+.+.+|.+|+|.+|.+|+-
T Consensus 545 ~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva 586 (630)
T KOG0742|consen 545 SHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA 586 (630)
T ss_pred hHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 111111 11111 12234567899999999999999874
No 139
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=8.3e-09 Score=125.66 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=91.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|++|.|++.+++.|...+.. + +.+..+||+||+|||||++|+++|+.+++
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~----------~---r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA----------G---RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999988752 2 23356899999999999999999998853
Q ss_pred ------------eeeEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHHHHHHHH
Q 001244 1011 ------------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1116)
Q Consensus 1011 ------------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~Ilne 1074 (1116)
.++.++.+... ....++++.+.+. .....|+||||++.|- ....|.
T Consensus 76 C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 23333332210 1223344433332 2234699999999882 235667
Q ss_pred HHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1075 LL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
|+..|+.. ...+++|.+|+.+..|.++|++|.
T Consensus 138 LLK~LEEp----p~~~~fIL~tte~~kll~TI~SRc 169 (584)
T PRK14952 138 LLKIVEEP----PEHLIFIFATTEPEKVLPTIRSRT 169 (584)
T ss_pred HHHHHhcC----CCCeEEEEEeCChHhhHHHHHHhc
Confidence 77777653 356788888888889999999875
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=6.7e-09 Score=126.44 Aligned_cols=132 Identities=25% Similarity=0.357 Sum_probs=94.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
+.+|+++.|++.+++.|...+.. .+....+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999988762 223467899999999999999999998842
Q ss_pred ----------eeeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1011 ----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
+++.++.+. ......++.+...+.. ....|+||||+|.|. ...++.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 344444322 1223456666666543 234699999999883 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. +..+++|.+|+.++.|.+.|++|+.
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc~ 171 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRCQ 171 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHhe
Confidence 777653 3456777777788999999998864
No 141
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=7.2e-09 Score=124.63 Aligned_cols=132 Identities=23% Similarity=0.340 Sum_probs=91.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|+++.|++.+++.|...+.. + +.+..+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~----------~---~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ----------G---RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999888762 1 233567999999999999999999998531
Q ss_pred ----------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHH
Q 001244 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1116)
Q Consensus 1012 ----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~ 1077 (1116)
++.++... ......++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33344321 1112334555444332 245799999999772 234566666
Q ss_pred HhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1078 ~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
.++.. ...+++|.+|+.+..|.+++.+|+.
T Consensus 139 ~LEep----~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 139 TLEEP----PEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred HHHhC----CCCEEEEEEcCChhhCChHHhcceE
Confidence 66553 3457777788888999999998764
No 142
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=7.8e-09 Score=125.06 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=91.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|+++.|++.+++.|...+.. .+....+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35899999999999999888752 2233578999999999999999999999652
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++.+. ......++.+...+... ...|+||||+|.|- ....|.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 11234566676666432 23599999999882 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..++.. +..+.+|.+|+.+..+.+.|++|.
T Consensus 141 K~LEep----p~~~~fIL~t~d~~kil~tI~SRc 170 (527)
T PRK14969 141 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC 170 (527)
T ss_pred HHHhCC----CCCEEEEEEeCChhhCchhHHHHH
Confidence 777663 346777777777888888888765
No 143
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1e-08 Score=125.33 Aligned_cols=131 Identities=20% Similarity=0.285 Sum_probs=91.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++++|++.+++.|..++.. + +-...+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~----------~---rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ----------Q---RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 46899999999999999988762 2 223568999999999999999999998641
Q ss_pred ----------------eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHH
Q 001244 1012 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1116)
Q Consensus 1012 ----------------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~I 1071 (1116)
|+.++..+ ......++.+.+.+... ...|+||||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22332221 11223456666554322 23599999999883 234
Q ss_pred HHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1072 lneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
+|.|+..++.. ...+.+|.+|+.+..+.+.|++|.
T Consensus 141 ~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc 175 (618)
T PRK14951 141 FNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC 175 (618)
T ss_pred HHHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc
Confidence 56777776653 345677777778888888898876
No 144
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=9.6e-09 Score=125.13 Aligned_cols=132 Identities=23% Similarity=0.286 Sum_probs=90.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|+|++.+++.|..++.. + +-...+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~----------~---ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE----------N---RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999988752 2 123579999999999999999999999652
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHH----hcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A----~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++...- .....++.+.+.+ ......||||||+|.|- ...++.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333433210 0112233332222 22345799999999882 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. ..++++|++|+.+..|.+.|++|+.
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRcq 171 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRCQ 171 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhhh
Confidence 776653 2467888888888888888888764
No 145
>PHA02244 ATPase-like protein
Probab=98.90 E-value=5e-09 Score=120.37 Aligned_cols=120 Identities=23% Similarity=0.294 Sum_probs=72.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccccc---chHHHHHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG---EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~G---esEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
.+|||+||||||||+||++||..++.+|+.++.-.-.....| ........-|..|.+ ..++||||||+.+-
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~----- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASI----- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCC-----
Confidence 369999999999999999999999999999874210111111 111111222333333 45899999999772
Q ss_pred CchhHHHHHHHHH-HHHHhcCCCcCCCCCEEEEEEeCCC-----------CCCcHHHHhhcC
Q 001244 1062 PGEHEAMRKMKNE-FMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLP 1111 (1116)
Q Consensus 1062 ~~~~~~lr~Ilne-LL~~Ldgl~~k~~~kVLVIaTTNrp-----------~~LD~ALlRRF~ 1111 (1116)
+..+..+..++.. ++..+++. .....++.||+|+|.+ ..|++|+++||-
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv 254 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA 254 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE
Confidence 1112222222211 11111121 1124578999999974 468999999995
No 146
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.89 E-value=1.2e-08 Score=115.35 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=85.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC-----CeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg-----~pfI~Is~se 1019 (1116)
+.+|+++.|.+.+++.|..++.. + ...++||+||||||||++|+++|+++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P----NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 45789999999999999887651 1 113699999999999999999999983 4577888766
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHhc-----CCCeEEEEccccccccCCCCCchhHHHHHHHHH
Q 001244 1020 ITSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1116)
Q Consensus 1020 L~sk~-------------~Ge-------sEk~Ir~lF~~A~k-----~sPsIIfIDEID~Llg~R~~~~~~~~lr~Ilne 1074 (1116)
+...+ .+. ....++.+...... ..+.+|||||++.+- ....+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~------------~~~~~~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR------------EDAQQA 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC------------HHHHHH
Confidence 53211 011 01223333323222 234699999999872 111233
Q ss_pred HHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1075 LL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
|...++... ....+|.+|+.+..+.+.+.+|+.
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~~ 177 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRCL 177 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCce
Confidence 444444332 223455566666677788888763
No 147
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=1.3e-08 Score=123.05 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=89.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|++++|++.+++.|...+.. + +....+||+||+|+|||++|+++|+.+..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~----------~---rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET----------Q---KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 45899999999999999887752 1 23356899999999999999999998853
Q ss_pred ----------eeeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1011 ----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
.++.++...- . ....++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHH
Confidence 2333332211 1 11234455444432 234699999999882 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..|+.. +..+.+|++|+.+..+.+.|++|.
T Consensus 141 K~LEep----p~~v~fIL~Ttd~~kil~tI~SRc 170 (546)
T PRK14957 141 KTLEEP----PEYVKFILATTDYHKIPVTILSRC 170 (546)
T ss_pred HHHhcC----CCCceEEEEECChhhhhhhHHHhe
Confidence 777653 245666666677888888888876
No 148
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.89 E-value=1.6e-09 Score=123.95 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=87.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-------CC--eeeEE
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GA--NFINI 1015 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-------g~--pfI~I 1015 (1116)
...|.+|.|++++++.+.-.+.. . ...++||+|+||||||++|+++|..+ +. .+..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~----------~----~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID----------P----GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc----------c----CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35789999999999888754321 1 12479999999999999999999998 33 22211
Q ss_pred ecc---------cc---------------ccccccch--HHH--------HHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 1016 SMS---------SI---------------TSKWFGEG--EKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 1016 s~s---------eL---------------~sk~~Ges--Ek~--------Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
.+. .+ ....+|.. ++. -...+..|. .++||||||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~---~GiL~lDEInrl~----- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARAN---RGYLYIDEVNLLE----- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcC---CCeEEecChHhCC-----
Confidence 100 00 01122210 000 011221222 2699999999872
Q ss_pred CchhHHHHHHHHHHHHHh---------cCCCcCCCCCEEEEEEeCCCC-CCcHHHHhhcCCeEEC
Q 001244 1062 PGEHEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~L---------dgl~~k~~~kVLVIaTTNrp~-~LD~ALlRRF~r~I~V 1116 (1116)
..+++.|+..| +|.....+.++++|+|+|..+ .+.+++++||...|.+
T Consensus 142 -------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v 199 (334)
T PRK13407 142 -------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEV 199 (334)
T ss_pred -------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEc
Confidence 23333333333 333223456899999999755 6999999999887754
No 149
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.87 E-value=3.2e-09 Score=122.03 Aligned_cols=144 Identities=17% Similarity=0.288 Sum_probs=88.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-------CCeee----
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI---- 1013 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-------g~pfI---- 1013 (1116)
...|.+|+|+++.+..|.-.+.. ....++||.|++|||||++|++++..+ +.+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 34689999999999998766542 123589999999999999999998877 22333
Q ss_pred -----------------------------EEeccccccccccchHHHHHHHHHHHh---------cCCCeEEEEcccccc
Q 001244 1014 -----------------------------NISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1014 -----------------------------~Is~seL~sk~~GesEk~Ir~lF~~A~---------k~sPsIIfIDEID~L 1055 (1116)
.+....-.+..+|.. .+.+.|.... +...++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 111111111122211 0111111111 112379999999988
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHh---------cCCCcCCCCCEEEEEEeCCCC-CCcHHHHhhcCCeEEC
Q 001244 1056 LGRRENPGEHEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1056 lg~R~~~~~~~~lr~IlneLL~~L---------dgl~~k~~~kVLVIaTTNrp~-~LD~ALlRRF~r~I~V 1116 (1116)
- . .+...|+..| +|.....+.++++|+|.|..+ .+.+++++||...|.|
T Consensus 157 ~-----~-------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l 215 (350)
T CHL00081 157 D-----D-------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEI 215 (350)
T ss_pred C-----H-------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeec
Confidence 2 1 2222233333 233323356899999999765 6999999999977654
No 150
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.87 E-value=2.6e-08 Score=114.37 Aligned_cols=143 Identities=19% Similarity=0.270 Sum_probs=93.7
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---------CeeeEEeccc
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 1019 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---------~pfI~Is~se 1019 (1116)
+++.|.++..+.|...+...+. + ..+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 5789999999999887753221 1 1235799999999999999999998762 6788888865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHh-cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH
Q 001244 1020 ITSK----------WF--G--------EGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1116)
Q Consensus 1020 L~sk----------~~--G--------esEk~Ir~lF~~A~-k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~ 1078 (1116)
..+. +. | ........++.... ...+.||+|||+|.|.+.. ..++.+|+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 4221 10 1 01223445555443 2456799999999996221 1244445433
Q ss_pred hcCCCcCCCCCEEEEEEeCCCC---CCcHHHHhhcC
Q 001244 1079 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP 1111 (1116)
Q Consensus 1079 Ldgl~~k~~~kVLVIaTTNrp~---~LD~ALlRRF~ 1111 (1116)
++.. ...+.++.+|+++|.++ .+++.+.+||.
T Consensus 156 ~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~ 190 (365)
T TIGR02928 156 RSNG-DLDNAKVGVIGISNDLKFRENLDPRVKSSLC 190 (365)
T ss_pred cccc-CCCCCeEEEEEEECCcchHhhcCHHHhccCC
Confidence 2111 11236799999999886 48888888885
No 151
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.87 E-value=6.7e-09 Score=118.53 Aligned_cols=123 Identities=28% Similarity=0.432 Sum_probs=79.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc--ccccchHHHHH----H--------HHHHHhcCCCeEEEEc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEKYVK----A--------VFSLASKIAPSVVFVD 1050 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s--k~~GesEk~Ir----~--------lF~~A~k~sPsIIfID 1050 (1116)
.++||.||||||||+||+++|..++.+|+++.+...+. ..+|...-... . +|.... +|+|+|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 46999999999999999999999999999999874322 22232211111 1 111111 499999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHHhcCCC-cCCCCCEEEEEEeC-----CCCCCcHHHHhhcCCeEEC
Q 001244 1051 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATN-----RPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1051 EID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-~k~~~kVLVIaTTN-----rp~~LD~ALlRRF~r~I~V 1116 (1116)
||++. ++..+.++..++++....+.+.. ..-+..++||+|+| ....|++|+++||...++|
T Consensus 120 EInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v 186 (329)
T COG0714 120 EINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYV 186 (329)
T ss_pred ccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEec
Confidence 99855 32223333333333222233333 33356789999999 4567999999999655543
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.87 E-value=1.8e-08 Score=115.08 Aligned_cols=132 Identities=25% Similarity=0.396 Sum_probs=93.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|+++.|++.+++.|.+.+.. + +.+..+||+||||+|||++|+++|+.+...
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~----------~---~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN----------G---RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999887752 2 233579999999999999999999987432
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++... ......++.++..+... ...||+|||+|.+- ....+.|+
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 33333221 11233567777766543 23599999999882 23456677
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. ...+++|.+|+.++.|.+++++|+.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~~ 169 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRCQ 169 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhee
Confidence 776553 3457777788888888899998874
No 153
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.86 E-value=1.7e-08 Score=108.01 Aligned_cols=87 Identities=23% Similarity=0.384 Sum_probs=61.3
Q ss_pred CCCccccc--CcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccc
Q 001244 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIg--Gldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~se 1019 (1116)
..+|+++. +.....+.+++.+. ......++|+||+|||||++|+++++++ +.+++.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 35677764 45566677766542 1123589999999999999999999887 57888899887
Q ss_pred cccccccchHHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
+.... ..++....+ ..+|||||++.+
T Consensus 77 ~~~~~--------~~~~~~~~~--~~lLvIDdi~~l 102 (226)
T TIGR03420 77 LAQAD--------PEVLEGLEQ--ADLVCLDDVEAI 102 (226)
T ss_pred HHHhH--------HHHHhhccc--CCEEEEeChhhh
Confidence 65321 233333222 469999999987
No 154
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=1.4e-08 Score=124.02 Aligned_cols=132 Identities=21% Similarity=0.313 Sum_probs=93.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|+|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~----------~---~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT----------G---RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999988752 2 234678999999999999999999998532
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++..+ ......++.+...+... ...|+||||+|.|- ....|.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 33333221 11223456665555322 23599999999882 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..|+.. ...+++|.+|+.++.|.+.|++|+.
T Consensus 141 k~LEep----p~~~~fIl~t~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 141 KTLEEP----PPHVKFIFATTEPHKVPITILSRCQ 171 (576)
T ss_pred HHHHcC----CCCeEEEEEeCChhhhhHHHHHhhh
Confidence 777653 3467888888888999999998763
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.86 E-value=7.2e-09 Score=123.17 Aligned_cols=115 Identities=18% Similarity=0.347 Sum_probs=73.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R 1059 (1116)
..++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999998 567888988877655443322111223333333 46899999999885432
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC---CcHHHHhhcCC
Q 001244 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR 1112 (1116)
Q Consensus 1060 ~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~---LD~ALlRRF~r 1112 (1116)
. .++.+-.+++.+. . ..+.+||+++..|.. +++.+.+||..
T Consensus 228 ~---~~~~l~~~~n~l~-------~--~~~~iiits~~~p~~l~~l~~~l~SRl~~ 271 (450)
T PRK00149 228 R---TQEEFFHTFNALH-------E--AGKQIVLTSDRPPKELPGLEERLRSRFEW 271 (450)
T ss_pred H---HHHHHHHHHHHHH-------H--CCCcEEEECCCCHHHHHHHHHHHHhHhcC
Confidence 1 1222222233222 1 223466666666554 77899999964
No 156
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1.7e-08 Score=122.42 Aligned_cols=132 Identities=19% Similarity=0.278 Sum_probs=92.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
+.+|+++.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~----------~---rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN----------N---KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887742 2 23367999999999999999999999842
Q ss_pred ----------eeeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1011 ----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
.++.++.+.. .....++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHH
Confidence 2333332210 1123456665555432 23599999999882 12346677
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..|+.. +..+++|.+|+.+..|.++|++|+.
T Consensus 141 KtLEEP----p~~tvfIL~Tt~~~KLl~TI~SRcq 171 (605)
T PRK05896 141 KTLEEP----PKHVVFIFATTEFQKIPLTIISRCQ 171 (605)
T ss_pred HHHHhC----CCcEEEEEECCChHhhhHHHHhhhh
Confidence 776653 3457777788888999999998874
No 157
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=2.2e-08 Score=119.08 Aligned_cols=132 Identities=22% Similarity=0.296 Sum_probs=90.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|++|+|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~----------~---~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF----------N---RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 46899999999999999888752 1 23467999999999999999999998843
Q ss_pred -----------eeeEEeccccccccccchHHHHHHHHHHH----hcCCCeEEEEccccccccCCCCCchhHHHHHHHHHH
Q 001244 1011 -----------NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1116)
Q Consensus 1011 -----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A----~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneL 1075 (1116)
.++.++.... .| -..++.+-+.. ......||||||+|.|. ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 2333332111 11 12223222222 23456899999999883 2335677
Q ss_pred HHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1076 L~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+..++.. ...+++|++||.+..|.++|++|+.
T Consensus 142 Lk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 142 LKTLEEP----PQHVKFFLATTEIHKIPGTILSRCQ 173 (451)
T ss_pred HHHhhcC----CCCceEEEEeCChHhcchHHHHhce
Confidence 7777663 2467777788888899999998874
No 158
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.84 E-value=3.2e-09 Score=120.54 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=80.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc--cccchH----------HHHHHHHHHHhcCCCeEEEEccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 1052 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk--~~GesE----------k~Ir~lF~~A~k~sPsIIfIDEI 1052 (1116)
++|||.||||||||++|++||..++.+++++++...+.. ++|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 479999999999999999999999999999988765443 444321 112234455554 4588999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHH-----hcCC-Cc-CCCCCEEEEEEeCCCC------------CCcHHHHhhcCCe
Q 001244 1053 DSMLGRRENPGEHEAMRKMKNEFMVN-----WDGL-RT-KDKERVLVLAATNRPF------------DLDEAVVRRLPRR 1113 (1116)
Q Consensus 1053 D~Llg~R~~~~~~~~lr~IlneLL~~-----Ldgl-~~-k~~~kVLVIaTTNrp~------------~LD~ALlRRF~r~ 1113 (1116)
|.. .+..+. .++.+|.. +.+. .. .....+.||||+|... .|++|+++||-..
T Consensus 144 n~a-----~p~~~~----~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 144 DAG-----RPDVMF----VIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIV 214 (327)
T ss_pred hcc-----CHHHHH----HHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeE
Confidence 966 222222 23333321 1111 11 1123688999999854 4799999999765
Q ss_pred EE
Q 001244 1114 TC 1115 (1116)
Q Consensus 1114 I~ 1115 (1116)
+.
T Consensus 215 ~~ 216 (327)
T TIGR01650 215 TT 216 (327)
T ss_pred ee
Confidence 53
No 159
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=2.7e-08 Score=122.89 Aligned_cols=138 Identities=22% Similarity=0.316 Sum_probs=94.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEE---ecc---
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SMS--- 1018 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~I---s~s--- 1018 (1116)
+.+|+++.|++.+++.|...+.. + +....+||+||+|+|||++|+++|+.+.+.-... .|.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~----------~---rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS----------N---KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999988862 2 2345789999999999999999999985421100 000
Q ss_pred -------ccc-cc-cccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC
Q 001244 1019 -------SIT-SK-WFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1116)
Q Consensus 1019 -------eL~-sk-~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k 1085 (1116)
++. .. ........++.+.+.+... ...|+||||+|.|- ....+.|+..|+..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP--- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP--- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC---
Confidence 000 00 0001234467777666542 34699999999883 23466777777763
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1086 DKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1086 ~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+..+++|.+|+.++.|.+.|++|+.
T Consensus 146 -P~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHhhce
Confidence 3467777788888999999999885
No 160
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=3.4e-08 Score=114.15 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=90.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee----------eE
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------IN 1014 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf----------I~ 1014 (1116)
+.+|++++|++.+++.+...+.. + +.+..+|||||||+|||++|+++|+.+..+. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~----------~---~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN----------N---HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46899999999999999888752 1 2336899999999999999999999885421 11
Q ss_pred EeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCE
Q 001244 1015 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1116)
Q Consensus 1015 Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kV 1090 (1116)
+... .........++.++..+... .+.||||||+|.+. ...++.|+..++.. ....
T Consensus 80 ~~l~----~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~----~~~~ 139 (367)
T PRK14970 80 FELD----AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEP----PAHA 139 (367)
T ss_pred EEec----cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCC----CCce
Confidence 1111 00112234566777665432 34699999999773 12345666666542 2345
Q ss_pred EEEEEeCCCCCCcHHHHhhcC
Q 001244 1091 LVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1091 LVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
++|.+|+.+..+.+++.+|+.
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRCQ 160 (367)
T ss_pred EEEEEeCCcccCCHHHHhcce
Confidence 666667777889999988874
No 161
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.82 E-value=5.7e-08 Score=112.82 Aligned_cols=144 Identities=18% Similarity=0.268 Sum_probs=94.1
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccc
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSIT 1021 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~ 1021 (1116)
..+.+.|-++..+.|...+...+. + ..+.+++|+||||||||++++.+++++ ++.++++++....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~-------~---~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR-------G---SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC-------C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 345688888888888877753211 1 122579999999999999999999887 5789999886432
Q ss_pred c----------cccc--------chHHHHHHHHHHHhc-CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC
Q 001244 1022 S----------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1116)
Q Consensus 1022 s----------k~~G--------esEk~Ir~lF~~A~k-~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl 1082 (1116)
+ .+.+ ..+..+..++....+ ..+.||+|||+|.+.... . ..++..|+..++..
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~ 169 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEY 169 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhcc
Confidence 1 1111 112233444444333 346799999999986221 1 23455566555544
Q ss_pred CcCCCCCEEEEEEeCCCC---CCcHHHHhhcC
Q 001244 1083 RTKDKERVLVLAATNRPF---DLDEAVVRRLP 1111 (1116)
Q Consensus 1083 ~~k~~~kVLVIaTTNrp~---~LD~ALlRRF~ 1111 (1116)
. ..++.||+++|..+ .+++.+.+||.
T Consensus 170 ~---~~~v~vI~i~~~~~~~~~l~~~~~s~~~ 198 (394)
T PRK00411 170 P---GARIGVIGISSDLTFLYILDPRVKSVFR 198 (394)
T ss_pred C---CCeEEEEEEECCcchhhhcCHHHHhcCC
Confidence 2 34788999998764 47788888875
No 162
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.81 E-value=1.5e-08 Score=126.37 Aligned_cols=128 Identities=23% Similarity=0.408 Sum_probs=83.6
Q ss_pred CCCcccccCcHHHHH---HHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk~---~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~ 1021 (1116)
..+|+++.|++.... .|.+.+. .. ...++||+||||||||++|++||+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~----------~~----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK----------AD----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh----------cC----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 467999999998875 4544443 11 12479999999999999999999999999998886531
Q ss_pred cccccchHHHHHHHHHHHh-----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEe
Q 001244 1022 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1116)
Q Consensus 1022 sk~~GesEk~Ir~lF~~A~-----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTT 1096 (1116)
+ .+.++.++..+. .....+|||||||.|- . ...+.|+..++ ...+++|++|
T Consensus 89 ----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~-------~qQdaLL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----K-------AQQDALLPWVE------NGTITLIGAT 144 (725)
T ss_pred ----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----H-------HHHHHHHHHhc------CceEEEEEec
Confidence 1 112333333331 1245799999999882 1 11223333332 2457777765
Q ss_pred C--CCCCCcHHHHhhcC
Q 001244 1097 N--RPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1097 N--rp~~LD~ALlRRF~ 1111 (1116)
+ ....+++++++|..
T Consensus 145 Tenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 145 TENPYFEVNKALVSRSR 161 (725)
T ss_pred CCChHhhhhhHhhcccc
Confidence 3 33568899998853
No 163
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=3e-08 Score=121.99 Aligned_cols=132 Identities=23% Similarity=0.302 Sum_probs=94.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|+++.|++.+++.|..++.. +. -...+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~----------~r---l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS----------NR---IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc----------CC---CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 46799999999999999888762 11 22479999999999999999999998652
Q ss_pred -------------eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHH
Q 001244 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1116)
Q Consensus 1012 -------------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~Ilne 1074 (1116)
++.++.. .......++++...++.. ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 2222211 122345677777766532 23699999999882 234567
Q ss_pred HHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1075 LL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
|+..++.. ...+++|++|+.+..|-++|++|+.
T Consensus 141 LLK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc~ 173 (620)
T PRK14948 141 LLKTLEEP----PPRVVFVLATTDPQRVLPTIISRCQ 173 (620)
T ss_pred HHHHHhcC----CcCeEEEEEeCChhhhhHHHHhhee
Confidence 77777753 3457777778888889999998774
No 164
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.80 E-value=1.2e-09 Score=108.63 Aligned_cols=114 Identities=30% Similarity=0.408 Sum_probs=63.1
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEecc-ccc-cccccc-----hHH----HHHHHHHHHhcCCCeEEEEccccc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGE-----GEK----YVKAVFSLASKIAPSVVFVDEVDS 1054 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s-eL~-sk~~Ge-----sEk----~Ir~lF~~A~k~sPsIIfIDEID~ 1054 (1116)
+|||.|+||+|||++|+++|..++..|.+|.+. +++ ++..|. ... .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999998764 332 121221 110 001122 25999999985
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC-----CCcHHHHhhcC
Q 001244 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 1111 (1116)
Q Consensus 1055 Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~-----~LD~ALlRRF~ 1111 (1116)
. .+..|.++.+++.+-...++|....-..+++||||-|+.+ .|++|+++||-
T Consensus 74 a-----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 A-----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred C-----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5 3334444444444444444454444567899999999875 69999999993
No 165
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=3.5e-08 Score=120.11 Aligned_cols=132 Identities=21% Similarity=0.233 Sum_probs=92.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
+.+|++|.|++.+++.|...+.. + +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~----------~---~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES----------N---KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999988752 2 233579999999999999999999998542
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
|+.++... ...-..++++.+.+. .....|+||||++.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222211 011234455544332 2344699999999882 23456777
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.. +..+++|.+|+.+..|.++|++|+.
T Consensus 141 K~LEep----p~~~vfI~~tte~~kL~~tI~SRc~ 171 (563)
T PRK06647 141 KTIEEP----PPYIVFIFATTEVHKLPATIKSRCQ 171 (563)
T ss_pred HhhccC----CCCEEEEEecCChHHhHHHHHHhce
Confidence 777653 3467777777878889999999865
No 166
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.79 E-value=5.2e-09 Score=111.87 Aligned_cols=45 Identities=44% Similarity=0.680 Sum_probs=36.7
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
|.+|.|++.+|.+|.-+.. + ..++||+||||||||++|++++..+
T Consensus 2 f~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999986664 2 1589999999999999999999776
No 167
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.79 E-value=6e-08 Score=104.60 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=57.6
Q ss_pred CCCccccc--CcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccc
Q 001244 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIg--Gldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~se 1019 (1116)
..+|+++. +...+...+..+.. + ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-----------~--~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-----------G--PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-----------c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788865 34455555554432 1 1223579999999999999999999986 77888888766
Q ss_pred cccccccchHHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
+... +. ......+|||||+|.+
T Consensus 81 ~~~~------------~~--~~~~~~~liiDdi~~l 102 (227)
T PRK08903 81 PLLA------------FD--FDPEAELYAVDDVERL 102 (227)
T ss_pred hHHH------------Hh--hcccCCEEEEeChhhc
Confidence 4321 11 1223579999999977
No 168
>PRK12377 putative replication protein; Provisional
Probab=98.79 E-value=3.8e-08 Score=108.51 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=92.2
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHH
Q 001244 929 EFEKKLLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV 1004 (1116)
Q Consensus 929 e~e~~ll~~iIp~~e~~vtfddIgGl-de---vk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAI 1004 (1116)
..++.+....|++.....+|+++... +. +...+..++. .|.. ...+++|+||||||||+||.||
T Consensus 54 ~~~~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~-------~~~~-----~~~~l~l~G~~GtGKThLa~AI 121 (248)
T PRK12377 54 RVEKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIAD-------ELMT-----GCTNFVFSGKPGTGKNHLAAAI 121 (248)
T ss_pred HHHHHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHH-------HHHh-----cCCeEEEECCCCCCHHHHHHHH
Confidence 34455566677887778899988532 22 2333333322 2221 1258999999999999999999
Q ss_pred HHHh---CCeeeEEeccccccccccch--HHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHh
Q 001244 1005 ATEA---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1116)
Q Consensus 1005 A~el---g~pfI~Is~seL~sk~~Ges--Ek~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~L 1079 (1116)
|+++ |..++.++.+++.......- ......++... ....+|+||||+..-. + .....++..++...
T Consensus 122 a~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~---s----~~~~~~l~~ii~~R 192 (248)
T PRK12377 122 GNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE---T----KNEQVVLNQIIDRR 192 (248)
T ss_pred HHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC---C----HHHHHHHHHHHHHH
Confidence 9998 77888888887765421100 00112233333 3457999999975521 1 11223333443332
Q ss_pred cCCCcCCCCCEEEEEEeCCCC-----CCcHHHHhhcC
Q 001244 1080 DGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 1111 (1116)
Q Consensus 1080 dgl~~k~~~kVLVIaTTNrp~-----~LD~ALlRRF~ 1111 (1116)
- ..+.-+|.|||... .+.+.+++|+.
T Consensus 193 ~------~~~~ptiitSNl~~~~l~~~~~~ri~dRl~ 223 (248)
T PRK12377 193 T------ASMRSVGMLTNLNHEAMSTLLGERVMDRMT 223 (248)
T ss_pred H------hcCCCEEEEcCCCHHHHHHHhhHHHHHHHh
Confidence 1 12334577898653 36778888875
No 169
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=8.7e-09 Score=114.63 Aligned_cols=160 Identities=22% Similarity=0.391 Sum_probs=102.4
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhc---CCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-ccccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFG 1026 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~---~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-sk~~G 1026 (1116)
++|++.+|+.|.-++.. .|.++... ..+.-.-.+|||.||+|+|||.||+.+|+.+++||.--++.+|. ..|+|
T Consensus 63 VIGQe~AKKvLsVAVYN--HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN--HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehh--HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 57888887776544321 11121111 11111124899999999999999999999999999999999886 46899
Q ss_pred chHH-HHHHHHHHH----hcCCCeEEEEccccccccCCCCCch-hH-HHHHHHHHHHHHhcCCC----cC-----CCCCE
Q 001244 1027 EGEK-YVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR----TK-----DKERV 1090 (1116)
Q Consensus 1027 esEk-~Ir~lF~~A----~k~sPsIIfIDEID~Llg~R~~~~~-~~-~lr~IlneLL~~Ldgl~----~k-----~~~kV 1090 (1116)
+.-. .+-++.+.| .+...+||||||||.+..+..++.- .+ ...-+.|.||..+.|.. +. .+..+
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 8744 455666655 2345689999999999865543321 11 12356778888877632 21 12235
Q ss_pred EEEEEeCCCC-------CCcHHHHhhcCC
Q 001244 1091 LVLAATNRPF-------DLDEAVVRRLPR 1112 (1116)
Q Consensus 1091 LVIaTTNrp~-------~LD~ALlRRF~r 1112 (1116)
+-|=|+|-.+ -|+.-+.+|..+
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~ 249 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGK 249 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccC
Confidence 5555555433 466666667654
No 170
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.78 E-value=7.1e-09 Score=128.03 Aligned_cols=141 Identities=21% Similarity=0.307 Sum_probs=93.8
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh------------------
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 1008 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el------------------ 1008 (1116)
.|.+|.|++.++..|.-.... . ...+|||.|++|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~----------~----~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD----------P----RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC----------C----CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 477899999999887654431 1 12479999999999999999999988
Q ss_pred -----------------CCeeeEEeccccccccccch--HHHH--------HHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 1009 -----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 1009 -----------------g~pfI~Is~seL~sk~~Ges--Ek~I--------r~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
..+|+.+.+......++|.. ++.+ ..++..|.+ +|||||||+.|-
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~---GiL~lDEi~~l~----- 139 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHR---GILYIDEVNLLD----- 139 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCC---CeEEeChhhhCC-----
Confidence 35777776655444445532 1111 112222222 799999999882
Q ss_pred CchhHHHHHHHHHHHHHhc---------CCCcCCCCCEEEEEEeCCC-CCCcHHHHhhcCCeEEC
Q 001244 1062 PGEHEAMRKMKNEFMVNWD---------GLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ld---------gl~~k~~~kVLVIaTTNrp-~~LD~ALlRRF~r~I~V 1116 (1116)
..+++.|+..|+ |.......+++||+|+|.. ..|.++|++||..+|.|
T Consensus 140 -------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v 197 (633)
T TIGR02442 140 -------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDV 197 (633)
T ss_pred -------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEc
Confidence 233444444443 2222234679999999964 36899999999877754
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.8e-08 Score=121.67 Aligned_cols=143 Identities=22% Similarity=0.372 Sum_probs=109.1
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.++-++|-++.++.+.+.+.. +...+-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 455688888888887776652 122467899999999999999999876 67888999
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCch-hHHHHHHHHHHHHHhcCCCcCCCCCEEEE
Q 001244 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1017 ~seL~--sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~-~~~lr~IlneLL~~Ldgl~~k~~~kVLVI 1093 (1116)
++.+. .+|-|+.|..++.+.....+..+.|||||||+.+.|.....+. -++.+-+.-.| .+..+-+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEE
Confidence 99886 4688999999999999999988999999999999987765442 22333222222 14568889
Q ss_pred EEeCC-----CCCCcHHHHhhcCCe
Q 001244 1094 AATNR-----PFDLDEAVVRRLPRR 1113 (1116)
Q Consensus 1094 aTTNr-----p~~LD~ALlRRF~r~ 1113 (1116)
|+|.. ...-|+||-|||..+
T Consensus 304 GATT~~EYRk~iEKD~AL~RRFQ~V 328 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRFQKV 328 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcCcee
Confidence 99863 345789999999654
No 172
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=4.8e-08 Score=119.59 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=92.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe-------c
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M 1017 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is-------~ 1017 (1116)
..+|++++|++.+++.|...+. .+ +.+..+||+||+|+|||++|+++|+.+.+...... |
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~----------~g---ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFE----------TG---RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHH----------cC---CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 4689999999999999988775 22 23468999999999999999999999865322111 0
Q ss_pred c--------------cccccc--ccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHH
Q 001244 1018 S--------------SITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1116)
Q Consensus 1018 s--------------eL~sk~--~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~ 1077 (1116)
. ++.... .......++.+...+... ...||||||+|.|- ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 0 000000 001233566666666432 24699999999882 234567777
Q ss_pred HhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1078 ~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
.|+.. ...+.+|.+|+.++.+.+.|++|+.
T Consensus 155 tLEeP----p~~~~fIl~tte~~kll~tI~SRcq 184 (598)
T PRK09111 155 TLEEP----PPHVKFIFATTEIRKVPVTVLSRCQ 184 (598)
T ss_pred HHHhC----CCCeEEEEEeCChhhhhHHHHhhee
Confidence 77654 2456666677777778888888774
No 173
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=5.6e-08 Score=113.96 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=85.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|.|++.+++.|...+. .+ +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~----------~~---~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLR----------MG---RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHH----------hC---CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 4689999999999999988775 22 233579999999999999999999999652
Q ss_pred -------------------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHH
Q 001244 1012 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 1068 (1116)
Q Consensus 1012 -------------------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~l 1068 (1116)
|+.++.... .....++.+.+.+.. ....||||||+|.|-
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------ 140 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------
Confidence 112211110 112345555444422 123699999999883
Q ss_pred HHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1069 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1069 r~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..-.+.|+..++.. ....++|.+|+.+..|-++|.+|.
T Consensus 141 ~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~ 178 (397)
T PRK14955 141 IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC 178 (397)
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH
Confidence 12345566666543 234555556666778888887765
No 174
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=5.9e-08 Score=116.39 Aligned_cols=132 Identities=22% Similarity=0.281 Sum_probs=88.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
+.+|+++.|++.+.+.|...+.. + +....+||+||+|+|||++|+.+|..+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~----------~---~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL----------Q---RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46899999999999999888752 1 233568999999999999999999998531
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++.+. ......++.+...+.. ....|+||||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 12222111 0112334555555443 234699999999873 23346667
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++..+ ..+++|.+|+.++.|.+++++|+.
T Consensus 141 k~LEepp----~~~v~Il~tt~~~kl~~tI~SRc~ 171 (486)
T PRK14953 141 KTLEEPP----PRTIFILCTTEYDKIPPTILSRCQ 171 (486)
T ss_pred HHHhcCC----CCeEEEEEECCHHHHHHHHHHhce
Confidence 6666532 345555556667888889998874
No 175
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.75 E-value=7.7e-08 Score=118.52 Aligned_cols=62 Identities=31% Similarity=0.457 Sum_probs=48.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeE
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~ 1014 (1116)
..+|++++|.+...+.+...+.. ..+..+||+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 35789999999988887655531 112479999999999999999998766 357899
Q ss_pred Eecccc
Q 001244 1015 ISMSSI 1020 (1116)
Q Consensus 1015 Is~seL 1020 (1116)
+++..+
T Consensus 216 i~~~~l 221 (615)
T TIGR02903 216 VDGTTL 221 (615)
T ss_pred Eechhc
Confidence 998765
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.75 E-value=5e-08 Score=94.64 Aligned_cols=58 Identities=29% Similarity=0.488 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCC-CeEEEEcchhhhhcCC--------hhhHHHHHHHHhcCCC---CEEEEeeccCCCc
Q 001244 689 AINELFEVALNESKSS-PLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQLDS 749 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~-P~ILfidDie~~l~~~--------~e~~~~lk~~Le~L~g---~VviIgS~~~~d~ 749 (1116)
.+..+|+.+.. .. |+||||||+|.+.... ....+.|...|++... ++++|++++.++.
T Consensus 45 ~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~ 114 (132)
T PF00004_consen 45 KIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK 114 (132)
T ss_dssp HHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG
T ss_pred ccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhh
Confidence 45556666655 54 9999999999976655 6778888888888866 6999999996443
No 177
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.75 E-value=2e-08 Score=117.79 Aligned_cols=115 Identities=19% Similarity=0.361 Sum_probs=70.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R 1059 (1116)
..++||||+|+|||+|+++|++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.+..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 578889988776554332211111112222222 35799999999885432
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC---CcHHHHhhcCC
Q 001244 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR 1112 (1116)
Q Consensus 1060 ~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~---LD~ALlRRF~r 1112 (1116)
. .++.+-.+++.+. . ..+.+||+++..|.. +++.+.+||..
T Consensus 216 ~---~~~~l~~~~n~~~-------~--~~~~iiits~~~p~~l~~l~~~l~SRl~~ 259 (405)
T TIGR00362 216 R---TQEEFFHTFNALH-------E--NGKQIVLTSDRPPKELPGLEERLRSRFEW 259 (405)
T ss_pred H---HHHHHHHHHHHHH-------H--CCCCEEEecCCCHHHHhhhhhhhhhhccC
Confidence 1 1222222222222 1 234456666655654 66889999964
No 178
>PRK08116 hypothetical protein; Validated
Probab=98.74 E-value=3.8e-08 Score=109.68 Aligned_cols=117 Identities=20% Similarity=0.278 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-
Q 001244 930 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 1008 (1116)
Q Consensus 930 ~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el- 1008 (1116)
.+..+....+++.....+|+++.........+..+..+ .+.|... .....+++|+|++|||||+||.|||+++
T Consensus 66 ~~~l~~~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y----~~~~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 66 IERLKSNSLLDEKFRNSTFENFLFDKGSEKAYKIARKY----VKKFEEM--KKENVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred HHHHHHhcCCCHHHHhcchhcccCChHHHHHHHHHHHH----HHHHHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445556677766678888876444333222222211 1122221 1123579999999999999999999987
Q ss_pred --CCeeeEEeccccccccc----cchHHHHHHHHHHHhcCCCeEEEEccccc
Q 001244 1009 --GANFINISMSSITSKWF----GEGEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1116)
Q Consensus 1009 --g~pfI~Is~seL~sk~~----GesEk~Ir~lF~~A~k~sPsIIfIDEID~ 1054 (1116)
+.+++.++.++++..+. +........++.... ...+|+|||++.
T Consensus 140 ~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 140 EKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred HcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 88999999887655431 111111223333332 346999999964
No 179
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2e-08 Score=115.25 Aligned_cols=128 Identities=27% Similarity=0.470 Sum_probs=91.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-cccccch-HHHHHHHHHHHh----cCCCeEEEEccccccccC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-sk~~Ges-Ek~Ir~lF~~A~----k~sPsIIfIDEID~Llg~ 1058 (1116)
.+|||.||+|+|||.||+.||+-+++||.-.+|.+|. ..|+|+. |..|.+++..|. +.+.+||||||||.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 3899999999999999999999999999999999986 4688876 567788888773 456799999999999733
Q ss_pred CCCCchh-H-HHHHHHHHHHHHhcCCC---------cCCCCCEEEEEEeCCCC-------CCcHHHHhhcCC
Q 001244 1059 RENPGEH-E-AMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNRPF-------DLDEAVVRRLPR 1112 (1116)
Q Consensus 1059 R~~~~~~-~-~lr~IlneLL~~Ldgl~---------~k~~~kVLVIaTTNrp~-------~LD~ALlRRF~r 1112 (1116)
..+.... + --.-+.+.||.+++|.. ...+...+.|=|||-.+ .||.-+.||.+.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d 378 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDD 378 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcc
Confidence 2221111 1 11356677777776532 11223355555555433 588888888764
No 180
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.74 E-value=8.4e-08 Score=105.59 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=94.4
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccCc-HHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHH
Q 001244 929 EFEKKLLADVIPPSDIGVTFDDIGAL-ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 929 e~e~~ll~~iIp~~e~~vtfddIgGl-devk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..++.+....|++.....+|+++... +.....+..+..+. +.|.. ...+++|+|+||||||+||.+||++
T Consensus 52 ~~~~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~----~~~~~-----~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 52 KMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYV----EEFDG-----NIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred HHHHHHHHcCCCccccCCccccccCCCchHHHHHHHHHHHH----Hhhcc-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 34444556667777778899998543 23323333322211 11211 1248999999999999999999999
Q ss_pred h---CCeeeEEeccccccccccc---hHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcC
Q 001244 1008 A---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1116)
Q Consensus 1008 l---g~pfI~Is~seL~sk~~Ge---sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldg 1081 (1116)
+ +..++.++.+++....... .......++.... ...+|+|||++.... ......++.+++...-
T Consensus 123 l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~-------s~~~~~~l~~Ii~~Ry- 192 (244)
T PRK07952 123 LLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE-------SRYEKVIINQIVDRRS- 192 (244)
T ss_pred HHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-------CHHHHHHHHHHHHHHH-
Confidence 8 7888888888876543211 1112234444433 467999999986521 1222344444443321
Q ss_pred CCcCCCCCEEEEEEeCCCC-----CCcHHHHhhc
Q 001244 1082 LRTKDKERVLVLAATNRPF-----DLDEAVVRRL 1110 (1116)
Q Consensus 1082 l~~k~~~kVLVIaTTNrp~-----~LD~ALlRRF 1110 (1116)
..+..+|.|||... .+.+.+++|+
T Consensus 193 -----~~~~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 193 -----SSKRPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred -----hCCCCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 12345778888653 3667777777
No 181
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.73 E-value=1.2e-07 Score=103.58 Aligned_cols=131 Identities=18% Similarity=0.250 Sum_probs=74.5
Q ss_pred CCCccccc--CcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccc
Q 001244 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIg--Gldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~se 1019 (1116)
..+|+++. ....+...+...... . ....++|+||+|||||+|+.++++++ |..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~----------~----~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ----------E----HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788875 344455555544321 1 12479999999999999999999887 44455555443
Q ss_pred cccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCC-EEEEEEeCC
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1098 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~k-VLVIaTTNr 1098 (1116)
... ....+++.... ..+|+||||+.+.+.. ..+..+..+++.++ + ..+ .+|+++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---~~~~~lf~l~n~~~---e------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---LWEMAIFDLYNRIL---E------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---HHHHHHHHHHHHHH---H------cCCCeEEEeCCCC
Confidence 211 11122222222 2689999999884321 11222333333332 1 233 355555555
Q ss_pred CCC---CcHHHHhhcC
Q 001244 1099 PFD---LDEAVVRRLP 1111 (1116)
Q Consensus 1099 p~~---LD~ALlRRF~ 1111 (1116)
|.. +.+.|++||.
T Consensus 142 p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 142 PRQLNLGLPDLASRLD 157 (235)
T ss_pred hHHcCcccHHHHHHHh
Confidence 554 6799999985
No 182
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.71 E-value=2.9e-08 Score=117.85 Aligned_cols=115 Identities=17% Similarity=0.330 Sum_probs=71.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchH-HHHHHHHHHHhcCCCeEEEEccccccccC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesE-k~Ir~lF~~A~k~sPsIIfIDEID~Llg~ 1058 (1116)
.+++||||+|+|||+|+.++++++ +..++++++.++...+..... ..+. -|...++..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467888888776554432111 1122 233333446789999999988643
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC---CcHHHHhhcCC
Q 001244 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR 1112 (1116)
Q Consensus 1059 R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~---LD~ALlRRF~r 1112 (1116)
.. .+..+..+++.+. + ..+.+||++...|.. +.+.+.+||..
T Consensus 210 ~~---~q~elf~~~n~l~---~------~~k~iIitsd~~p~~l~~l~~rL~SR~~~ 254 (440)
T PRK14088 210 TG---VQTELFHTFNELH---D------SGKQIVICSDREPQKLSEFQDRLVSRFQM 254 (440)
T ss_pred HH---HHHHHHHHHHHHH---H------cCCeEEEECCCCHHHHHHHHHHHhhHHhc
Confidence 21 1222222333332 1 234556655566654 56678888863
No 183
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=5.9e-08 Score=105.51 Aligned_cols=105 Identities=23% Similarity=0.350 Sum_probs=61.8
Q ss_pred EEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~ 1062 (1116)
.++|+||||||||+|+.|+|+++ +....++++... ......++.... ...+|+||||+.+.+...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~-- 108 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNEE-- 108 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCChH--
Confidence 58999999999999999999987 445555554321 111122333332 347999999998854321
Q ss_pred chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc---HHHHhhcC
Q 001244 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRLP 1111 (1116)
Q Consensus 1063 ~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD---~ALlRRF~ 1111 (1116)
.+..+..+++.+. . .+..++|++++..|..++ +.+.+|+.
T Consensus 109 -~~~~l~~l~n~~~-------~-~~~~illits~~~p~~l~~~~~~L~sRl~ 151 (229)
T PRK06893 109 -WELAIFDLFNRIK-------E-QGKTLLLISADCSPHALSIKLPDLASRLT 151 (229)
T ss_pred -HHHHHHHHHHHHH-------H-cCCcEEEEeCCCChHHccccchhHHHHHh
Confidence 1112222222221 1 123455666666676554 88998875
No 184
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.71 E-value=6.1e-08 Score=111.28 Aligned_cols=141 Identities=19% Similarity=0.347 Sum_probs=86.5
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-------CCeee------
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 1013 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-------g~pfI------ 1013 (1116)
.|..|.|+++++..|.-.+..| ...++||.|++|+|||+|+++++..+ +.+|-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 4788999999998886544311 12579999999999999999999877 33332
Q ss_pred -------EE------------------ecc--ccccccccchH--HH--------HHHHHHHHhcCCCeEEEEccccccc
Q 001244 1014 -------NI------------------SMS--SITSKWFGEGE--KY--------VKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1014 -------~I------------------s~s--eL~sk~~GesE--k~--------Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
+. +++ ......+|... +. -..++..|. .++||||||+.|-
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~ 144 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE 144 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC
Confidence 00 110 00112233211 11 111222333 3799999999872
Q ss_pred cCCCCCchhHHHHHHHHHHHHHh---------cCCCcCCCCCEEEEEEeCCCC-CCcHHHHhhcCCeEEC
Q 001244 1057 GRRENPGEHEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1057 g~R~~~~~~~~lr~IlneLL~~L---------dgl~~k~~~kVLVIaTTNrp~-~LD~ALlRRF~r~I~V 1116 (1116)
..+.+.|+..| +|.....+.++++|+|+|..+ .|.+++++||...+.+
T Consensus 145 ------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l 202 (337)
T TIGR02030 145 ------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEI 202 (337)
T ss_pred ------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEEC
Confidence 12223333333 232222346799999998665 6999999999877654
No 185
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.70 E-value=1.4e-07 Score=116.65 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=92.9
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEecc
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 1018 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is~s 1018 (1116)
+.|.+.++.+++|..++...+. + ..+...++|+|+||||||++++.+..++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 5688999999999888764332 1 1232345699999999999999998776 2678899985
Q ss_pred ccccc----------ccc-------chHHHHHHHHHHHhc--CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHh
Q 001244 1019 SITSK----------WFG-------EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1116)
Q Consensus 1019 eL~sk----------~~G-------esEk~Ir~lF~~A~k--~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~L 1079 (1116)
.+... +.+ .....+..+|..... ....||+|||||.|... .+ .++..|+..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~Q----DVLYnLFR~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQ----KVLFTLFDW- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HH----HHHHHHHHH-
Confidence 43221 111 123455667765522 23569999999999632 12 333333332
Q ss_pred cCCCcCCCCCEEEEEEeCC---CCCCcHHHHhhcCC
Q 001244 1080 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1080 dgl~~k~~~kVLVIaTTNr---p~~LD~ALlRRF~r 1112 (1116)
... ...++.|||++|. ++.|++.+.+||..
T Consensus 896 ~~~---s~SKLiLIGISNdlDLperLdPRLRSRLg~ 928 (1164)
T PTZ00112 896 PTK---INSKLVLIAISNTMDLPERLIPRCRSRLAF 928 (1164)
T ss_pred hhc---cCCeEEEEEecCchhcchhhhhhhhhcccc
Confidence 221 2467999999986 45677888888864
No 186
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=1.1e-07 Score=116.82 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=87.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf------------ 1012 (1116)
..+|++|+|++.+++.|...+.. + +....+||+||+|+|||++|+++|+.+++..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~----------~---~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE----------G---RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh----------C---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887752 2 2235689999999999999999999985321
Q ss_pred -------------eEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHH
Q 001244 1013 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1116)
Q Consensus 1013 -------------I~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneL 1075 (1116)
+.++... ......++.+...+.. ....||||||+|.|- ...++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222211 0112234444433322 234699999999882 2335667
Q ss_pred HHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1076 L~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+..++... ..++||.+|+..+.+.+.|++|+.
T Consensus 141 Lk~LEepp----~~tv~Il~t~~~~kll~tI~SR~~ 172 (585)
T PRK14950 141 LKTLEEPP----PHAIFILATTEVHKVPATILSRCQ 172 (585)
T ss_pred HHHHhcCC----CCeEEEEEeCChhhhhHHHHhccc
Confidence 77766542 346666667777778888888764
No 187
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.69 E-value=4.6e-08 Score=118.94 Aligned_cols=116 Identities=19% Similarity=0.354 Sum_probs=75.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R 1059 (1116)
..++|||++|+|||+|+.||++++ +..++++++.++...+...........|...+. .+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999987 578899999887766543322222223443333 46899999999885433
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC----CCCcHHHHhhcCCeE
Q 001244 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP----FDLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1060 ~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp----~~LD~ALlRRF~r~I 1114 (1116)
. .++.+-.+++.+. +..+-+|| |+|.+ ..|++.|++||..-+
T Consensus 394 ~---tqeeLF~l~N~l~---------e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GL 439 (617)
T PRK14086 394 S---TQEEFFHTFNTLH---------NANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGL 439 (617)
T ss_pred H---HHHHHHHHHHHHH---------hcCCCEEE-ecCCChHhhhhccHHHHhhhhcCc
Confidence 1 1222333444433 11233444 55544 357899999996544
No 188
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.68 E-value=2e-07 Score=104.56 Aligned_cols=132 Identities=23% Similarity=0.336 Sum_probs=84.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~se 1019 (1116)
+.+|+++.|.+++++.+..++.. +. ..++||+||||||||++|+++++++ ..+++.++.++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~~----~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------KN----MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------CC----CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999887742 11 1258999999999999999999987 23455555443
Q ss_pred cccccccchHHHHHH-HHHHHhc-----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEE
Q 001244 1020 ITSKWFGEGEKYVKA-VFSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~-lF~~A~k-----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVI 1093 (1116)
... ...++. +...+.. ..+.+|+|||+|.+.. ...+.|+..++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~~~~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------DAQQALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------HHHHHHHHHHhcCC----CCCeEE
Confidence 211 111222 2222221 2356999999998831 11233444444332 235566
Q ss_pred EEeCCCCCCcHHHHhhcCC
Q 001244 1094 AATNRPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1094 aTTNrp~~LD~ALlRRF~r 1112 (1116)
.++|.+..+.+++.+|+..
T Consensus 137 l~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred EEeCCccccchhHHHHhhe
Confidence 6777777788888887753
No 189
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.6e-07 Score=115.29 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=87.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|++|.|++.+++.|...+.. + +-...+||+||+|||||++|+++|+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~----------~---ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM----------D---RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999887752 2 223579999999999999999999999652
Q ss_pred -------------------eeEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHH
Q 001244 1012 -------------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAM 1068 (1116)
Q Consensus 1012 -------------------fI~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~l 1068 (1116)
|+.++.... .....|+.+.+.+. .....||||||+|.|-
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------
Confidence 111211100 11234444444442 1234699999999882
Q ss_pred HHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1069 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1069 r~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..-.+.|+..|+..+ ..+++|.+|+.+..|-++|++|.
T Consensus 141 ~~a~naLLK~LEePp----~~tv~IL~t~~~~kLl~TI~SRc 178 (620)
T PRK14954 141 TAAFNAFLKTLEEPP----PHAIFIFATTELHKIPATIASRC 178 (620)
T ss_pred HHHHHHHHHHHhCCC----CCeEEEEEeCChhhhhHHHHhhc
Confidence 123566777776642 34555566666788888888875
No 190
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.67 E-value=1.3e-08 Score=123.14 Aligned_cols=134 Identities=22% Similarity=0.324 Sum_probs=85.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHH--------h---CCeeeE
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE--------A---GANFIN 1014 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~e--------l---g~pfI~ 1014 (1116)
.+|++|.|....++.+.+.+... ......|||+|++||||+++|++|++. . +.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 35888999999888888877532 112347999999999999999999998 3 679999
Q ss_pred Eecccccc-----ccccchHH--------HHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcC
Q 001244 1015 ISMSSITS-----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1116)
Q Consensus 1015 Is~seL~s-----k~~GesEk--------~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldg 1081 (1116)
++|+.+.. ..+|..+. .-..+|+.|.+ ++||||||+.|- ...+..+.+++++--...-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP-----LPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC-----HHHHHHHHhhhhcCeEEecC
Confidence 99987632 23342211 11246776665 899999999882 12222222222211000001
Q ss_pred CCcCCCCCEEEEEEeCCC
Q 001244 1082 LRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1082 l~~k~~~kVLVIaTTNrp 1099 (1116)
-......++.||++||..
T Consensus 356 ~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 356 GHQPVPVDVRVISATHCD 373 (538)
T ss_pred CCceeccceEEEEecCCC
Confidence 111113457899999873
No 191
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=1.9e-07 Score=112.69 Aligned_cols=132 Identities=20% Similarity=0.285 Sum_probs=90.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|+++.|++.+++.|...+. .+ +-+..+||+||+|+|||++|+++|+.+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~----------~g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALD----------NN---RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHH----------cC---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 4689999999999999998875 22 23356799999999999999999998832
Q ss_pred ----------eeeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1011 ----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
.++.++.+.- ..-..++.+...+... ...|+||||+|.|- ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1233322110 0123455555443221 23599999999882 34456677
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..|... +..+.+|.+|+.+..|.++|++|..
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc~ 169 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRTQ 169 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhce
Confidence 777664 2446667777778999999999853
No 192
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.65 E-value=3.9e-08 Score=112.38 Aligned_cols=141 Identities=20% Similarity=0.217 Sum_probs=89.6
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc--
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 1022 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-- 1022 (1116)
++++.|.....+.+.+.+.... .....|||+|++||||+++|++|+... +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 5678888888888777765321 122469999999999999999999876 57999999997632
Q ss_pred ---ccccchH-------HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------cC
Q 001244 1023 ---KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1085 (1116)
Q Consensus 1023 ---k~~GesE-------k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~k 1085 (1116)
.++|... ......|..|. .++|||||||.|- ..+...|+..++... ..
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~------------~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP------------MLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC------------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 2333211 01123444444 3899999999882 222333333332211 11
Q ss_pred CCCCEEEEEEeCCC-------CCCcHHHHhhcC-CeEE
Q 001244 1086 DKERVLVLAATNRP-------FDLDEAVVRRLP-RRTC 1115 (1116)
Q Consensus 1086 ~~~kVLVIaTTNrp-------~~LD~ALlRRF~-r~I~ 1115 (1116)
...++.||+||+.. ..+.+.|..||. ..|.
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~ 175 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQ 175 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEE
Confidence 12368999999864 346677777873 3444
No 193
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.63 E-value=3.8e-08 Score=112.68 Aligned_cols=112 Identities=19% Similarity=0.309 Sum_probs=71.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc-----cccchH-------HHHHHHHHHHhcCCCeEEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGE-------KYVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk-----~~GesE-------k~Ir~lF~~A~k~sPsIIfI 1049 (1116)
..|||+|++||||+++|++|+... +.||+.++|..+... .+|... .....+|+.|.. ++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~g---GtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADG---GTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCC---CEEEe
Confidence 469999999999999999999877 579999999876332 222110 111234555544 89999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHHhcCC-------CcCCCCCEEEEEEeCCC-------CCCcHHHHhhcC
Q 001244 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRP-------FDLDEAVVRRLP 1111 (1116)
Q Consensus 1050 DEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl-------~~k~~~kVLVIaTTNrp-------~~LD~ALlRRF~ 1111 (1116)
|||+.|- ..+...|+..++.. ......++.||++||.. ..+.+.|..||.
T Consensus 100 dei~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~ 163 (329)
T TIGR02974 100 DELATAS------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA 163 (329)
T ss_pred CChHhCC------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc
Confidence 9999882 12222333333211 11123568999999863 235566777773
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.63 E-value=4.6e-08 Score=116.92 Aligned_cols=138 Identities=22% Similarity=0.319 Sum_probs=98.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee-------eEE-e
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INI-S 1016 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf-------I~I-s 1016 (1116)
..+|+++.|++.+...|..++.. + +-....||.||.|||||++||.+|+.+++.- ..+ .
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~----------~---ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN----------G---RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh----------C---cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998863 2 2235799999999999999999999996532 111 0
Q ss_pred ccccccc-cc---------cchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC
Q 001244 1017 MSSITSK-WF---------GEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1116)
Q Consensus 1017 ~seL~sk-~~---------GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl 1082 (1116)
|-++... ++ ...-..+|++.+.+. +....|.+|||++.|- ...+|.||..+..-
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEEP 146 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEEP 146 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhcccccC
Confidence 1111111 11 122345666666654 2334699999999882 56778888887764
Q ss_pred CcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1083 ~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+..|.+|.+|..+..++..+++|..
T Consensus 147 ----P~hV~FIlATTe~~Kip~TIlSRcq 171 (515)
T COG2812 147 ----PSHVKFILATTEPQKIPNTILSRCQ 171 (515)
T ss_pred ----ccCeEEEEecCCcCcCchhhhhccc
Confidence 4678999999999999999999653
No 195
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.6e-08 Score=109.07 Aligned_cols=75 Identities=31% Similarity=0.326 Sum_probs=61.7
Q ss_pred cccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCe
Q 001244 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1116)
Q Consensus 442 ~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~ 521 (1116)
-++|+.+.+=-||+-=|= -+-|+-|++-|.+-|+-.++ +-..+|-+-+|=|||.|||| ++++.|.||||+++-++
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 356666666678885443 67888888888888877665 56689999999999999999 89999999999999888
No 196
>PRK08727 hypothetical protein; Validated
Probab=98.63 E-value=2.6e-07 Score=100.85 Aligned_cols=105 Identities=25% Similarity=0.366 Sum_probs=64.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
..++|+||+|||||+|+.|+++++ +...+.+++.++.. .+..++.... ...+|+||||+.+.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 359999999999999999998876 66667776544322 2334444333 346999999998854321
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC-CCCC---CcHHHHhhcCC
Q 001244 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPFD---LDEAVVRRLPR 1112 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN-rp~~---LD~ALlRRF~r 1112 (1116)
.+..+-.+++.+. . .+..||.|+| .|.. +++++++||..
T Consensus 111 --~~~~lf~l~n~~~----~------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~ 153 (233)
T PRK08727 111 --DEVALFDFHNRAR----A------AGITLLYTARQMPDGLALVLPDLRSRLAQ 153 (233)
T ss_pred --HHHHHHHHHHHHH----H------cCCeEEEECCCChhhhhhhhHHHHHHHhc
Confidence 1222222332221 1 1233555554 5554 57999999743
No 197
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.62 E-value=3.2e-07 Score=99.31 Aligned_cols=135 Identities=22% Similarity=0.398 Sum_probs=100.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~ 1021 (1116)
.+.+.+|.|.+.+++.|.+.... |.++ .|..+|||+|..||||++|++|+.++. |..+|+|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 47899999999999999876653 3333 366899999999999999999999998 7778888876653
Q ss_pred cccccchHHHHHHHHHHHhcC-CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1022 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1022 sk~~GesEk~Ir~lF~~A~k~-sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
. +-.++...+.. ..-|||.|++- | ..++ .-+..|...|+|-....+.+|+|.||+|+..
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS--F----e~gd-----~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS--F----EEGD-----DAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC--C----CCCc-----hHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 2 34445444432 34699999984 1 1111 2234566677887777889999999999999
Q ss_pred CCcHHHHhh
Q 001244 1101 DLDEAVVRR 1109 (1116)
Q Consensus 1101 ~LD~ALlRR 1109 (1116)
.|.+.+..+
T Consensus 186 Ll~e~~~dn 194 (287)
T COG2607 186 LLPEDMKDN 194 (287)
T ss_pred cccHhhhhC
Confidence 888776654
No 198
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.62 E-value=8.2e-08 Score=114.11 Aligned_cols=115 Identities=20% Similarity=0.374 Sum_probs=72.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
.+++||||+|+|||+|++++++++ +..++++++..+...+.......-...|...+. ...+|+||||+.+.+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCChh-
Confidence 579999999999999999999987 788888888766443322111111123444443 467999999998853321
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC---CCcHHHHhhcCC
Q 001244 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPR 1112 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~---~LD~ALlRRF~r 1112 (1116)
.++....+++.+.. ..+.+||+++..|. .+++.|++||..
T Consensus 220 --~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~ 262 (445)
T PRK12422 220 --TQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEW 262 (445)
T ss_pred --hHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcC
Confidence 22333344444331 12345555544453 578899999963
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.62 E-value=9.6e-08 Score=102.60 Aligned_cols=131 Identities=23% Similarity=0.379 Sum_probs=87.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-C----CeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-g----~pfI~Is~se 1019 (1116)
...+.||+|.++....|.-... .++ ..+++|.||||||||+-+.++|+++ | --+.+++.++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~----------~gn----mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK----------EGN----MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH----------cCC----CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 4568899999999999876553 232 2389999999999999999999998 4 2456677665
Q ss_pred cccccccchHHHHHHHHHHHhc-CCC---eEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEE
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASK-IAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k-~sP---sIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaT 1095 (1116)
-.+- .- .++--+.|..-+- .+| .||++||.|+| ..+.|.++++.+.-.- ....+..+
T Consensus 89 eRGI--Dv-VRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFala 149 (333)
T KOG0991|consen 89 ERGI--DV-VRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALA 149 (333)
T ss_pred cccc--HH-HHHHHHHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhh
Confidence 4321 11 1222234443332 333 49999999999 3567788888765331 23456777
Q ss_pred eCCCCCCcHHHHh
Q 001244 1096 TNRPFDLDEAVVR 1108 (1116)
Q Consensus 1096 TNrp~~LD~ALlR 1108 (1116)
+|..+.+=+.+-+
T Consensus 150 CN~s~KIiEPIQS 162 (333)
T KOG0991|consen 150 CNQSEKIIEPIQS 162 (333)
T ss_pred hcchhhhhhhHHh
Confidence 7877665555544
No 200
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=4.7e-07 Score=111.49 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=91.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------------- 1010 (1116)
..+|++|.|++.+++.|...+.. + +.+..+|||||+|+|||++|+++|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~----------~---~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT----------N---KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 46899999999999999888752 2 23356999999999999999999998752
Q ss_pred -----------eeeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHH
Q 001244 1011 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1116)
Q Consensus 1011 -----------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneL 1075 (1116)
+++.++.... .....++.+...+... ..-|+||||+|.|- ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 3334433211 1123456665555432 23599999999882 2345677
Q ss_pred HHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1076 L~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+..|+..+ ..+++|.+|+.+..|-++|++|..
T Consensus 142 LK~LEepp----~~tifIL~tt~~~kIl~tI~SRc~ 173 (614)
T PRK14971 142 LKTLEEPP----SYAIFILATTEKHKILPTILSRCQ 173 (614)
T ss_pred HHHHhCCC----CCeEEEEEeCCchhchHHHHhhhh
Confidence 77776642 346666677777888899988763
No 201
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.60 E-value=2.5e-08 Score=120.47 Aligned_cols=95 Identities=25% Similarity=0.438 Sum_probs=70.7
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s 1022 (1116)
.+|+++.|....++.+.+.+... ......|||+|++||||+++|++|++.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY------------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 56889999999888888777531 1122579999999999999999999876 67999999987632
Q ss_pred -----ccccchHH--------HHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1023 -----KWFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1023 -----k~~GesEk--------~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
..+|..+. .-..+|+.|.. ++||||||+.|
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L 319 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM 319 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC
Confidence 23332211 12346666655 89999999988
No 202
>PRK05642 DNA replication initiation factor; Validated
Probab=98.60 E-value=2.6e-07 Score=100.99 Aligned_cols=105 Identities=23% Similarity=0.367 Sum_probs=67.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
..++|+||+|+|||+|++++++++ +..+++++..++... ...+.+.... ..+|+||||+.+.+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 579999999999999999999875 677888887765432 1122222222 25899999997743321
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC---CcHHHHhhcC
Q 001244 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP 1111 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~---LD~ALlRRF~ 1111 (1116)
.++.+-.++|.+. +..+.+||+++..|.. +.+.+++||.
T Consensus 115 --~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~ 156 (234)
T PRK05642 115 --WEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLT 156 (234)
T ss_pred --HHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHh
Confidence 1222333333332 2345677777665532 4788999984
No 203
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.59 E-value=6e-08 Score=117.13 Aligned_cols=152 Identities=27% Similarity=0.260 Sum_probs=84.2
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC-CeeeEE---eccccccccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-ANFINI---SMSSITSKWF 1025 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg-~pfI~I---s~seL~sk~~ 1025 (1116)
.|.|++.++..+.-.+.- ........+...+...+|||+|+||||||++|+++++.+. ..|+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~g--g~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFG--GVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhC--CCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 478899888777544321 1111111111122334899999999999999999999874 333331 2222211111
Q ss_pred cc---hHHHH-HHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH------hcCCCcCCCCCEEEEEE
Q 001244 1026 GE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN------WDGLRTKDKERVLVLAA 1095 (1116)
Q Consensus 1026 Ge---sEk~I-r~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~------Ldgl~~k~~~kVLVIaT 1095 (1116)
.. .+..+ ...+..|. .++++|||++.+- ...+ ..+.+.|.. -.|.....+.++.||||
T Consensus 282 ~~~~~g~~~~~~G~l~~A~---~Gil~iDEi~~l~-----~~~q----~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa 349 (509)
T smart00350 282 RDPETREFTLEGGALVLAD---NGVCCIDEFDKMD-----DSDR----TAIHEAMEQQTISIAKAGITTTLNARCSVLAA 349 (509)
T ss_pred EccCcceEEecCccEEecC---CCEEEEechhhCC-----HHHH----HHHHHHHhcCEEEEEeCCEEEEecCCcEEEEE
Confidence 11 00000 11222332 3799999999882 1112 222222211 02222233568999999
Q ss_pred eCCCC-------------CCcHHHHhhcCCeEE
Q 001244 1096 TNRPF-------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1096 TNrp~-------------~LD~ALlRRF~r~I~ 1115 (1116)
+|..+ .|++++++||+..+.
T Consensus 350 ~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~ 382 (509)
T smart00350 350 ANPIGGRYDPKLTPEENIDLPAPILSRFDLLFV 382 (509)
T ss_pred eCCCCcccCCCcChhhccCCChHHhCceeeEEE
Confidence 99753 599999999987654
No 204
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.58 E-value=5.6e-08 Score=113.02 Aligned_cols=141 Identities=23% Similarity=0.367 Sum_probs=95.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 1021 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~ 1021 (1116)
..+.+++|.....+++.+.+.. + ......|||+|++||||+.+|++|+... +.|||.++|+.+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4577888888887777776653 1 1223579999999999999999999654 6799999999763
Q ss_pred cc-----cccc-------hHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCC
Q 001244 1022 SK-----WFGE-------GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1116)
Q Consensus 1022 sk-----~~Ge-------sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~k 1089 (1116)
.. .||. ....-..+|+.|.. ++||+|||.+| +...++.+-+++.+-....-|-.......
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 32 2331 23334568888877 89999999988 33344444444443322212222334567
Q ss_pred EEEEEEeCCCCCCcHHHHh
Q 001244 1090 VLVLAATNRPFDLDEAVVR 1108 (1116)
Q Consensus 1090 VLVIaTTNrp~~LD~ALlR 1108 (1116)
|.+|+|||. +++.+++.
T Consensus 215 VRli~AT~~--~l~~~~~~ 231 (403)
T COG1221 215 VRLICATTE--DLEEAVLA 231 (403)
T ss_pred ceeeecccc--CHHHHHHh
Confidence 999999986 66666665
No 205
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.58 E-value=1.1e-07 Score=112.82 Aligned_cols=137 Identities=19% Similarity=0.236 Sum_probs=75.9
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--eeeEEecc-ccccccccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFGE 1027 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~--pfI~Is~s-eL~sk~~Ge 1027 (1116)
|.|.+++++.+..++. ...+|||+||||||||++|++||..++. +|..+.+. ......+|.
T Consensus 22 i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 5677777777765543 1147999999999999999999998742 45544432 112233442
Q ss_pred h-HHHH--HHHHHHHhcC---CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhc-------CCCcCCCCCEEEEE
Q 001244 1028 G-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRTKDKERVLVLA 1094 (1116)
Q Consensus 1028 s-Ek~I--r~lF~~A~k~---sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld-------gl~~k~~~kVLVIa 1094 (1116)
. -... ..-|....+- ...+||+|||..+ + ..+.+.|+..|. +...+-+.+++|+|
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----s-------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----G-------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----C-------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 1 0110 1223211110 2249999999855 3 344455555552 21112223444444
Q ss_pred EeCCCC---CCcHHHHhhcCCeEEC
Q 001244 1095 ATNRPF---DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1095 TTNrp~---~LD~ALlRRF~r~I~V 1116 (1116)
| |... ...+++..||-.+|.|
T Consensus 154 T-N~LPE~g~~leAL~DRFliri~v 177 (498)
T PRK13531 154 S-NELPEADSSLEALYDRMLIRLWL 177 (498)
T ss_pred C-CCCcccCCchHHhHhhEEEEEEC
Confidence 4 6321 2335999999666654
No 206
>PRK08181 transposase; Validated
Probab=98.56 E-value=3.1e-07 Score=102.52 Aligned_cols=113 Identities=23% Similarity=0.349 Sum_probs=70.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccc-hHHHHHHHHHHHhcCCCeEEEEccccccccCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~ 1060 (1116)
.+++|+||||||||+||.||++++ |..++.+++.+++..+... .+....+++.... .+.+|+|||++.+....
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~~- 183 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKDQ- 183 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCCH-
Confidence 579999999999999999999876 8888888888876643211 1122333444333 45799999998763211
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC----------CCcHHHHhhcCCe
Q 001244 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF----------DLDEAVVRRLPRR 1113 (1116)
Q Consensus 1061 ~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~----------~LD~ALlRRF~r~ 1113 (1116)
.....+.+++..... + --+|.|||.+. .+..++++|+-+.
T Consensus 184 ------~~~~~Lf~lin~R~~-----~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~ 233 (269)
T PRK08181 184 ------AETSVLFELISARYE-----R--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHH 233 (269)
T ss_pred ------HHHHHHHHHHHHHHh-----C--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcC
Confidence 112233333333211 1 24677888653 2456788888554
No 207
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.56 E-value=4e-07 Score=98.63 Aligned_cols=115 Identities=22% Similarity=0.407 Sum_probs=69.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R 1059 (1116)
..++||||+|+|||+|..||++++ +..++++++.++...+..........-|..... ...+|+||+|+.+.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch
Confidence 459999999999999999999876 677889988776554332221111112322223 45799999999984221
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC---CcHHHHhhcCC
Q 001244 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR 1112 (1116)
Q Consensus 1060 ~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~---LD~ALlRRF~r 1112 (1116)
..++.+-.+++.+. ...+.+||++...|.. +++.+.+||..
T Consensus 114 ---~~q~~lf~l~n~~~---------~~~k~li~ts~~~P~~l~~~~~~L~SRl~~ 157 (219)
T PF00308_consen 114 ---RTQEELFHLFNRLI---------ESGKQLILTSDRPPSELSGLLPDLRSRLSW 157 (219)
T ss_dssp ---HHHHHHHHHHHHHH---------HTTSEEEEEESS-TTTTTTS-HHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHH---------hhCCeEEEEeCCCCccccccChhhhhhHhh
Confidence 11233334444443 1244566666556553 67888889864
No 208
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.54 E-value=4.1e-07 Score=102.12 Aligned_cols=132 Identities=21% Similarity=0.301 Sum_probs=88.6
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC--------------------
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 1009 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg-------------------- 1009 (1116)
++.+.+.....+...+.. .+ +-+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666655541 11 1123599999999999999999999996
Q ss_pred ----CeeeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcC
Q 001244 1010 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1116)
Q Consensus 1010 ----~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldg 1081 (1116)
..|+.++.++....- -....++.+-...... ..-||+|||+|.|. ....|.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 467777776643321 1233444444444332 35799999999883 2344566666554
Q ss_pred CCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1082 LRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1082 l~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
. ..+..+|.+||.+..|-+.|.+|..
T Consensus 136 p----~~~~~~il~~n~~~~il~tI~SRc~ 161 (325)
T COG0470 136 P----PKNTRFILITNDPSKILPTIRSRCQ 161 (325)
T ss_pred C----CCCeEEEEEcCChhhccchhhhcce
Confidence 3 4678999999999999999988763
No 209
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=6.4e-07 Score=104.06 Aligned_cols=138 Identities=20% Similarity=0.202 Sum_probs=91.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee-----------e
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 1013 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf-----------I 1013 (1116)
..++++|.|++.+++.|...+.. + +-+..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~----------~---rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS----------G---RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc----------C---CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 46789999999999999988762 2 2346799999999999999999999882110 0
Q ss_pred EE----ec-----------cccc--c-ccccc--------hHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCc
Q 001244 1014 NI----SM-----------SSIT--S-KWFGE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 1063 (1116)
Q Consensus 1014 ~I----s~-----------seL~--s-k~~Ge--------sEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~ 1063 (1116)
.+ .| +++. . .+.+. ....|+.+-..+. ...+.||+|||+|.|-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00 00 0110 0 00010 1223455444443 2356799999999882
Q ss_pred hhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1064 ~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
....|.|+..+... ..++++|.+|+.++.+.+.+++|..
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc~ 193 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRCR 193 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccce
Confidence 34456777777653 3456777889999999999988874
No 210
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.52 E-value=4.3e-08 Score=118.97 Aligned_cols=96 Identities=23% Similarity=0.364 Sum_probs=68.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~ 1021 (1116)
..++++++|.....+.+.+.+.... .....|||+|++||||+++|++|+..+ +.+|+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3578899999998888887776321 123469999999999999999999986 6799999998763
Q ss_pred cc-----cccchHH-------HHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1022 SK-----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1022 sk-----~~GesEk-------~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
.. .+|.... .....|..|. .++||||||+.|
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L 302 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEI 302 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhC
Confidence 32 1221110 0011233333 489999999988
No 211
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=8.6e-07 Score=100.64 Aligned_cols=132 Identities=19% Similarity=0.323 Sum_probs=89.0
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--------eeeEEecc
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------NFINISMS 1018 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~--------pfI~Is~s 1018 (1116)
+|+++.|++.+++.+...+. .+ +-+..+||+||+|+|||++|+++|+.+-+ .|+.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~----------~~---~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII----------KN---RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH----------cC---CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 58899999999999988774 22 23357899999999999999999998732 22233221
Q ss_pred ccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1019 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1019 eL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
.++.+ .-..++.+.+.+.. ....|++||++|.|- ....|.|+..++.. +..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEep----p~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEEP----PKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcCC----CCCeEEEE
Confidence 11111 12235555544432 234699999999882 23456777777753 34566666
Q ss_pred EeCCCCCCcHHHHhhcC
Q 001244 1095 ATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1095 TTNrp~~LD~ALlRRF~ 1111 (1116)
+|+.++.|-+.|++|..
T Consensus 129 ~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 129 LCENLEQILDTIKSRCQ 145 (313)
T ss_pred EeCChHhCcHHHHhhce
Confidence 66788999999999874
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.51 E-value=4.4e-08 Score=121.26 Aligned_cols=95 Identities=24% Similarity=0.377 Sum_probs=67.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc-
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 1021 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~- 1021 (1116)
.+|+++.|.....+.+.+.+.... .....|||+|++||||+++|++|++.+ +.||+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468889898888777776665321 122469999999999999999999987 5799999998763
Q ss_pred ----cccccch----HHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1022 ----SKWFGEG----EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1022 ----sk~~Ges----Ek~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
+.++|.. .......|+.|. .++||||||+.|
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l 428 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYL 428 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhC
Confidence 2344422 000112344443 489999999988
No 213
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.51 E-value=7.7e-08 Score=116.18 Aligned_cols=126 Identities=19% Similarity=0.307 Sum_probs=82.6
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1022 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s- 1022 (1116)
.+.+++|....++.+.+.+... ......|||+|++||||+++|++|+... +.+|+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 3567889888888888777631 1223579999999999999999999986 57999999987743
Q ss_pred ----ccccchHH-------HHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------c
Q 001244 1023 ----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------T 1084 (1116)
Q Consensus 1023 ----k~~GesEk-------~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~ 1084 (1116)
.+||.... .....|+.|.. ++|||||||.|- ..+...|+..++... .
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~g---GtL~ldeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADG---GTLFLDEIGELP------------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCC---CEEEecChhhCC------------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 22332110 11224555544 899999999982 122233333332211 1
Q ss_pred CCCCCEEEEEEeCCC
Q 001244 1085 KDKERVLVLAATNRP 1099 (1116)
Q Consensus 1085 k~~~kVLVIaTTNrp 1099 (1116)
.....+.||+|||+.
T Consensus 318 ~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 318 SLRVDVRVIAATNRD 332 (509)
T ss_pred ceecceEEEEecCCC
Confidence 122468999999874
No 214
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.50 E-value=1.4e-07 Score=117.71 Aligned_cols=127 Identities=23% Similarity=0.358 Sum_probs=83.4
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s 1022 (1116)
.+|+++.|....++.+.+.+.... .....|||+|++|||||++|++|+..+ +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 467889999888888877665321 122469999999999999999999876 67999999987632
Q ss_pred -----ccccchH-------HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC-------C
Q 001244 1023 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------R 1083 (1116)
Q Consensus 1023 -----k~~GesE-------k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl-------~ 1083 (1116)
.++|... ......|+.|.+ ++||||||+.|- ..+...|+..++.. .
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~---GtL~Ldei~~L~------------~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADK---SSLFLDEVGDMP------------LELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCC---CeEEEechhhCC------------HHHHHHHHHHHHhCCEEeCCCC
Confidence 2333211 112234555544 899999999882 22223333333221 1
Q ss_pred cCCCCCEEEEEEeCCC
Q 001244 1084 TKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1084 ~k~~~kVLVIaTTNrp 1099 (1116)
.....++.||++|+..
T Consensus 506 ~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 506 KIIQTDVRLIAATNRD 521 (686)
T ss_pred CcccceEEEEEeCCCC
Confidence 1113568999999873
No 215
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.50 E-value=1.1e-06 Score=92.11 Aligned_cols=107 Identities=20% Similarity=0.274 Sum_probs=71.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCe------------------------eeEEeccccccccccchHHHHHHHHHHH
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSLA 1039 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~p------------------------fI~Is~seL~sk~~GesEk~Ir~lF~~A 1039 (1116)
+..+||+||+|+|||++|+++++.+... |..+.... .. -....++.+...+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHHH
Confidence 4679999999999999999999997331 22221110 00 1123455556555
Q ss_pred hc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1040 SK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1040 ~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
.. ....||||||+|.|- ....+.|+..|+.. +...++|.+|+.+..|.+++.+|+.
T Consensus 89 ~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~~ 148 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRCQ 148 (188)
T ss_pred ccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhcE
Confidence 44 234699999999883 23345677777663 2356677777777899999999874
No 216
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.50 E-value=1.9e-07 Score=109.28 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=71.0
Q ss_pred ceeEecceEEEeccCccceeecCCC--CCccceEEEEeecCCcceEEEEEecCcceEEEC--CeecCCCceEEeeCCCEE
Q 001244 146 HLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDEL 221 (1116)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~l~d~~--~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vN--g~~~~k~~~~~L~~GdEi 221 (1116)
.+.+....++|||+..||+.+.|+. ||..||+|... +|. .+|+|.|+||| ||| |..+.+|..+.|+.||+|
T Consensus 18 ~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 18 QKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred EEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCEE
Confidence 5667788999999999999999999 99999999975 343 78999999999 799 999999999999999999
Q ss_pred EEccCCCeeEE
Q 001244 222 VFSPSGKHSYI 232 (1116)
Q Consensus 222 ~f~~~~~~ayi 232 (1116)
.|+...-..++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99876444443
No 217
>PRK06620 hypothetical protein; Validated
Probab=98.48 E-value=8.1e-07 Score=96.00 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=58.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCch
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~ 1064 (1116)
..++||||||+|||+|++++++..+..++.- .. . ....+ + ...+|+||||+.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~--~~-----~------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD--IF-----F------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcch--hh-----h------chhHH----h-cCCEEEEeccccc--------h
Confidence 5799999999999999999999887644331 00 0 01111 1 2379999999965 1
Q ss_pred hHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC--CcHHHHhhcCC
Q 001244 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLPR 1112 (1116)
Q Consensus 1065 ~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~--LD~ALlRRF~r 1112 (1116)
...+-.++|.+. +.++.+||+++..|.. | +++++||..
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~ 138 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKS 138 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhC
Confidence 122333444332 2345677777765543 6 889999863
No 218
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.6e-06 Score=100.33 Aligned_cols=138 Identities=20% Similarity=0.173 Sum_probs=88.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC-------eeeEE-e
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-S 1016 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------pfI~I-s 1016 (1116)
...++++.|++.+.+.|...+.. + +-+..+||+||+|+|||++|+.+|+.+.. +.... .
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~----------g---rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE----------G---KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc----------C---CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 45789999999999999988752 2 23357999999999999999999999844 11000 0
Q ss_pred c---c-----------ccc--cccccc------h---HHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHH
Q 001244 1017 M---S-----------SIT--SKWFGE------G---EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 1067 (1116)
Q Consensus 1017 ~---s-----------eL~--sk~~Ge------s---Ek~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~ 1067 (1116)
+ . ++. ..-.+. . ...++.+-.... ....-||||||+|.|-
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 1 0 110 000000 0 122333333222 2234699999999882
Q ss_pred HHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1068 lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
....|.|+..++.. ..++++|..|+.++.|.+.|++|+.
T Consensus 155 -~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc~ 193 (351)
T PRK09112 155 -RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRCQ 193 (351)
T ss_pred -HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhcc
Confidence 23446677777653 2456666667888889999999884
No 219
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.48 E-value=1.1e-07 Score=115.22 Aligned_cols=96 Identities=26% Similarity=0.340 Sum_probs=68.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~ 1021 (1116)
..+|+++.|.....+.+.+.+.... . ....|||+|++||||+++|++|+..+ +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A-------~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLA-------M-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHh-------C-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 4578999999887777766554211 1 12359999999999999999998876 5799999998864
Q ss_pred cc-----cccchH-------HHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1022 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1022 sk-----~~GesE-------k~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
.. .+|... .....+|+.|.. ++||||||+.|
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L 310 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEM 310 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhC
Confidence 32 233211 111235665554 89999999988
No 220
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.47 E-value=1.9e-07 Score=112.39 Aligned_cols=140 Identities=26% Similarity=0.333 Sum_probs=85.7
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----C------------
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----G------------ 1009 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----g------------ 1009 (1116)
..|.++.|+..+++.+.-.+. ...++||.||||||||++|++++..+ +
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999888776654331 22579999999999999999999744 1
Q ss_pred ------------CeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHH
Q 001244 1010 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1116)
Q Consensus 1010 ------------~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~ 1077 (1116)
.||....++......+|.....-...+..|.+ ++||||||+.+ + ..++..|+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----~-------~~~~~~L~~ 317 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----K-------RSVLDALRE 317 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----C-------HHHHHHHHH
Confidence 12222222211111122211111234555555 89999999977 2 233333333
Q ss_pred HhcCC---------CcCCCCCEEEEEEeCCC-----C------------------CCcHHHHhhcCCeEEC
Q 001244 1078 NWDGL---------RTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1078 ~Ldgl---------~~k~~~kVLVIaTTNrp-----~------------------~LD~ALlRRF~r~I~V 1116 (1116)
.|+.. ......++.+|+|+|.- . .|...|++||+..+.|
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~ 388 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEV 388 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEE
Confidence 33221 11224578999999952 1 4889999999988764
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.47 E-value=4.5e-07 Score=103.97 Aligned_cols=113 Identities=19% Similarity=0.301 Sum_probs=68.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccc---hHHHHHHHHHHHhcCCCeEEEEccccccccC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~Ge---sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~ 1058 (1116)
.+++|+||+|||||+||.|||+++ |..++.++..+++..+... ........+.... ...+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 589999999999999999999998 8899999988876543110 0011111233332 347999999976531
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC-C----CCcHHHHhhcCC
Q 001244 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-F----DLDEAVVRRLPR 1112 (1116)
Q Consensus 1059 R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp-~----~LD~ALlRRF~r 1112 (1116)
+......+-.+++.... .+-.+|.|||.+ . .+++.+.+|+..
T Consensus 261 --t~~~~~~Lf~iin~R~~----------~~k~tIiTSNl~~~el~~~~~eri~SRL~~ 307 (329)
T PRK06835 261 --TEFSKSELFNLINKRLL----------RQKKMIISTNLSLEELLKTYSERISSRLLG 307 (329)
T ss_pred --CHHHHHHHHHHHHHHHH----------CCCCEEEECCCCHHHHHHHHhHHHHHHHHc
Confidence 11112222333333321 112356677754 2 256778887754
No 222
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=6e-07 Score=107.01 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=70.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchH---HHHHHHHHHHhcCCCeEEEEccccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE---KYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesE---k~Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
.+++|||++|+|||+|++|+++++ +..++++++.++...+..... ..+.. |..-++ ...+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~~-~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEIC-QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHhc-cCCEEEEecccccc
Confidence 469999999999999999999965 578888988877655433221 12222 222222 45799999999884
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC-CCC---CCcHHHHhhcCCe
Q 001244 1057 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPF---DLDEAVVRRLPRR 1113 (1116)
Q Consensus 1057 g~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN-rp~---~LD~ALlRRF~r~ 1113 (1116)
++. ..++.+..+++.+. + ..+. ||.|+| .|. .+++.|.+||..-
T Consensus 220 ~k~---~~~e~lf~l~N~~~---~------~~k~-iIltsd~~P~~l~~l~~rL~SR~~~G 267 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFI---E------NDKQ-LFFSSDKSPELLNGFDNRLITRFNMG 267 (450)
T ss_pred CCH---HHHHHHHHHHHHHH---H------cCCc-EEEECCCCHHHHhhccHHHHHHHhCC
Confidence 322 12233334444433 1 2233 444544 443 4678999999643
No 223
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.45 E-value=1e-06 Score=106.79 Aligned_cols=67 Identities=31% Similarity=0.497 Sum_probs=48.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHH----hcCCCeEEEEcccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVD 1053 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A----~k~sPsIIfIDEID 1053 (1116)
+-+||+||||-|||+||..||+++|+.+++|++++-.+. ..-...|..+.+.- ....|.+|+|||||
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 456799999999999999999999999999999875332 11112222222111 23579999999999
No 224
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.45 E-value=1.8e-07 Score=98.28 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=58.1
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccc-hHHHHHHHHHHHhcCCCeEEEEccccccccCC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R 1059 (1116)
..+++|+||+|||||+||.+|++++ |.++..++.++++...... .......++....+ ..+|+|||+...-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP--- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee---
Confidence 3699999999999999999999987 8999999998886543211 01112233333333 4799999997431
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC----------CCcHHHHhhcCCeEEC
Q 001244 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF----------DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1060 ~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~----------~LD~ALlRRF~r~I~V 1116 (1116)
........+.+++...-+ + + -+|.|||... .+-.++++|+.+..+|
T Consensus 122 ----~~~~~~~~l~~ii~~R~~-----~-~-~tIiTSN~~~~~l~~~~~d~~~a~aildRl~~~~~~ 177 (178)
T PF01695_consen 122 ----LSEWEAELLFEIIDERYE-----R-K-PTIITSNLSPSELEEVLGDRALAEAILDRLLHHCHV 177 (178)
T ss_dssp ------HHHHHCTHHHHHHHHH-----T---EEEEEESS-HHHHHT---------------------
T ss_pred ----ecccccccchhhhhHhhc-----c-c-CeEeeCCCchhhHhhccccccccccccccccccccC
Confidence 112222333334433221 1 2 3556999652 3667888888776654
No 225
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.45 E-value=5e-07 Score=113.43 Aligned_cols=165 Identities=21% Similarity=0.224 Sum_probs=92.0
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhh---cC----CCCCCCeEEEEECCCCCchHHHH
Q 001244 929 EFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 929 e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~---~~----~l~~p~~gILL~GPPGTGKT~LA 1001 (1116)
+.-..+...+.| .|.|++.+|+.|.-.+.--......+. .+ .-.+...+|||.|+||||||.+|
T Consensus 439 ~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLA 509 (915)
T PTZ00111 439 MIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLL 509 (915)
T ss_pred HHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHH
Confidence 344445555555 488999999887533321110000000 00 11234458999999999999999
Q ss_pred HHHHHHh-------CCeeeEEecccccccccc--chHHHH-HHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHH
Q 001244 1002 KAVATEA-------GANFINISMSSITSKWFG--EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1116)
Q Consensus 1002 rAIA~el-------g~pfI~Is~seL~sk~~G--esEk~I-r~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~I 1071 (1116)
++|++.. |.++..+.+..... +.+ ..+..+ ...+..|.+ ++++||||+.|- .. .+..
T Consensus 510 r~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAdg---GtL~IDEidkms-----~~----~Q~a 576 (915)
T PTZ00111 510 HYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLANG---GVCCIDELDKCH-----NE----SRLS 576 (915)
T ss_pred HHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcCC---CeEEecchhhCC-----HH----HHHH
Confidence 9999865 23445444433211 000 011110 112223333 799999999882 11 1222
Q ss_pred HHHHHHH------hcCCCcCCCCCEEEEEEeCCCC-------------CCcHHHHhhcCCeEE
Q 001244 1072 KNEFMVN------WDGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1072 lneLL~~------Ldgl~~k~~~kVLVIaTTNrp~-------------~LD~ALlRRF~r~I~ 1115 (1116)
+.++|.. -.|....-+.++.||||+|..+ .|+++|++||+..+.
T Consensus 577 LlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~ 639 (915)
T PTZ00111 577 LYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYL 639 (915)
T ss_pred HHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEE
Confidence 2233321 1133333457899999999752 488999999987654
No 226
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.43 E-value=7.3e-07 Score=103.35 Aligned_cols=149 Identities=22% Similarity=0.331 Sum_probs=89.8
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-------CCeee-----
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI----- 1013 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-------g~pfI----- 1013 (1116)
..|..+.|++..+..|.-... .....|+||.|+.|||||+++||||.-+ |++|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 456778999998888754322 2223689999999999999999999988 22221
Q ss_pred ----------------------------EEeccccccccccc--hHHHHH--------HHHHHHhcCCCeEEEEcccccc
Q 001244 1014 ----------------------------NISMSSITSKWFGE--GEKYVK--------AVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1014 ----------------------------~Is~seL~sk~~Ge--sEk~Ir--------~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
.+....-....+|. .++.++ .++..|.+ +|+|||||..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR---GIlYvDEvnlL 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR---GILYVDEVNLL 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC---CEEEEeccccc
Confidence 11111111112221 122222 12223333 79999999877
Q ss_pred ccCCCCCchhHHHHHHHHH--HHHHhcCCCcCCCCCEEEEEEeCCCC-CCcHHHHhhcCCeEEC
Q 001244 1056 LGRRENPGEHEAMRKMKNE--FMVNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1056 lg~R~~~~~~~~lr~Ilne--LL~~Ldgl~~k~~~kVLVIaTTNrp~-~LD~ALlRRF~r~I~V 1116 (1116)
- ...+..+..+..+ -..+.+|..-.-..++++|||+|... .|-+.|++||...|.+
T Consensus 157 ~-----d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~ 215 (423)
T COG1239 157 D-----DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDT 215 (423)
T ss_pred c-----HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeec
Confidence 2 1111222222222 12234555544567899999999764 6999999999987754
No 227
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.38 E-value=4.2e-07 Score=111.60 Aligned_cols=117 Identities=20% Similarity=0.341 Sum_probs=77.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC--CeeeEEeccccccccccchH--HHHH--------HHHHHHhcCCCeEEEEcc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK--------AVFSLASKIAPSVVFVDE 1051 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~seL~sk~~GesE--k~Ir--------~lF~~A~k~sPsIIfIDE 1051 (1116)
..+|||.|+||||||++|++|+..+. .+|+.+.........+|... ..+. .++..|. .++|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~---~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAP---RGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCC---CCcEeccc
Confidence 45899999999999999999999884 46998876433334444321 1000 0111222 26999999
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhc---------CCCcCCCCCEEEEEEeCCCC---CCcHHHHhhcCCeEE
Q 001244 1052 VDSMLGRRENPGEHEAMRKMKNEFMVNWD---------GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1052 ID~Llg~R~~~~~~~~lr~IlneLL~~Ld---------gl~~k~~~kVLVIaTTNrp~---~LD~ALlRRF~r~I~ 1115 (1116)
|+.+- ..+.+.|+..|+ |.......++.||||+|..+ .|.+++++||..+|.
T Consensus 93 i~rl~------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~ 156 (589)
T TIGR02031 93 ANLLD------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVS 156 (589)
T ss_pred hhhCC------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeee
Confidence 99882 233344444443 22222345789999999775 799999999998664
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.4e-06 Score=96.48 Aligned_cols=114 Identities=22% Similarity=0.358 Sum_probs=70.5
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccchH-HHH-HHHHHHHhcCCCeEEEEccccccccC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGE-KYV-KAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~GesE-k~I-r~lF~~A~k~sPsIIfIDEID~Llg~ 1058 (1116)
..+++|+||||||||+||.||++++ |..++.+..++++...-..-. ... .++..... ...+||||||...-
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~~-- 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYEP-- 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCcc--
Confidence 3689999999999999999999998 899999999988765321110 011 11222122 24799999998651
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC----------CcHHHHhhcCCe
Q 001244 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD----------LDEAVVRRLPRR 1113 (1116)
Q Consensus 1059 R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~----------LD~ALlRRF~r~ 1113 (1116)
. ....+..+.+++...- ..+-+ |.|+|.+.. +++++++|..+.
T Consensus 181 -~----~~~~~~~~~q~I~~r~------~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~~~ 233 (254)
T COG1484 181 -F----SQEEADLLFQLISRRY------ESRSL-IITSNLSFGEWDELFGDDALTEALLDRILHH 233 (254)
T ss_pred -C----CHHHHHHHHHHHHHHH------hhccc-eeecCCChHHHHhhccCchhHHHHHHHHHhc
Confidence 1 1112233333332211 12233 889997742 348888876543
No 229
>PRK06526 transposase; Provisional
Probab=98.37 E-value=3.7e-07 Score=101.11 Aligned_cols=113 Identities=20% Similarity=0.331 Sum_probs=67.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccc-hHHHHHHHHHHHhcCCCeEEEEccccccccCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~ 1060 (1116)
.+++|+||||||||+||.+|+.++ |..++.+++.+++...... ........+... ..+.+|+|||++.+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~-- 174 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE-- 174 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC--
Confidence 589999999999999999999887 7777777777665432110 111122222222 24689999999876311
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC----------CcHHHHhhcCCe
Q 001244 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD----------LDEAVVRRLPRR 1113 (1116)
Q Consensus 1061 ~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~----------LD~ALlRRF~r~ 1113 (1116)
.....++.+++..... . -.+|.|||.+.. +-.++++|+-+.
T Consensus 175 -----~~~~~~L~~li~~r~~-----~--~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~ 225 (254)
T PRK06526 175 -----PEAANLFFQLVSSRYE-----R--ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHH 225 (254)
T ss_pred -----HHHHHHHHHHHHHHHh-----c--CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcC
Confidence 1112333344433211 1 237778887632 334677887554
No 230
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.37 E-value=3e-06 Score=87.68 Aligned_cols=127 Identities=23% Similarity=0.341 Sum_probs=84.6
Q ss_pred CcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC----------------------
Q 001244 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 1010 (1116)
Q Consensus 953 Gldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~---------------------- 1010 (1116)
|++++.+.|...+.. + +-+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~----------~---~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS----------G---RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC----------T---C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc----------C---CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677788888877752 2 23467999999999999999999998821
Q ss_pred -eeeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC
Q 001244 1011 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1116)
Q Consensus 1011 -pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k 1085 (1116)
.|+.+....... .-....++.+...+... ..-|++|||+|.|- ....|.||..|+..
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 122222211100 01234556666655433 35699999999882 45667788887764
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1086 DKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1086 ~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+.++++|.+|+.++.|-+.|++|..
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred -CCCEEEEEEECChHHChHHHHhhce
Confidence 4679999999999999999999873
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.37 E-value=2e-06 Score=97.82 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=79.4
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCe
Q 001244 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GAN 1011 (1116)
Q Consensus 935 l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~p 1011 (1116)
...-+|......+|+++.........+...+. .+.+.+..+ ...+|++|+||+|||||+||.|||+++ |..
T Consensus 113 ~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~---~fi~~~~~~---~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~ 186 (306)
T PRK08939 113 QSIYMPKDLLQASLADIDLDDRDRLDALMAAL---DFLEAYPPG---EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS 186 (306)
T ss_pred HHcCCCHhHhcCcHHHhcCCChHHHHHHHHHH---HHHHHhhcc---CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 33445544345677777644422222222221 111222221 123699999999999999999999998 888
Q ss_pred eeEEeccccccccccc-hHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHH-HHHHHHHHHhcCCCcCCCCC
Q 001244 1012 FINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRTKDKER 1089 (1116)
Q Consensus 1012 fI~Is~seL~sk~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr-~IlneLL~~Ldgl~~k~~~k 1089 (1116)
+..+.+++++..+-.. ........+.... ...+|+||||+.-- .....+ .++..++...- ..+
T Consensus 187 v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-------~s~~~~~~ll~~Il~~R~------~~~ 251 (306)
T PRK08939 187 STLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-------MSSWVRDEVLGVILQYRM------QEE 251 (306)
T ss_pred EEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc-------ccHHHHHHHHHHHHHHHH------HCC
Confidence 8888888775443111 0111233333333 35799999997441 111222 34444432210 134
Q ss_pred EEEEEEeCCC
Q 001244 1090 VLVLAATNRP 1099 (1116)
Q Consensus 1090 VLVIaTTNrp 1099 (1116)
..+|.|||.+
T Consensus 252 ~~ti~TSNl~ 261 (306)
T PRK08939 252 LPTFFTSNFD 261 (306)
T ss_pred CeEEEECCCC
Confidence 5678899865
No 232
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.35 E-value=3.2e-07 Score=108.40 Aligned_cols=125 Identities=20% Similarity=0.276 Sum_probs=75.0
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc-
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk- 1023 (1116)
+..+.|.....+.+.+.+... ......++|+|++||||+++|++|+... +.+|+.++|..+...
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI------------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 445666666666666555321 1122469999999999999999999887 579999999876332
Q ss_pred ----cccchH-------HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcC-------CCcC
Q 001244 1024 ----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-------LRTK 1085 (1116)
Q Consensus 1024 ----~~GesE-------k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldg-------l~~k 1085 (1116)
.+|... ......|..| ..++||||||+.|- ..+...|+..+.. ....
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~------------~~~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLP------------LNLQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCC------------HHHHHHHHHHHhhCeEEeCCCCce
Confidence 122110 0111123333 34899999999882 1222233333321 1111
Q ss_pred CCCCEEEEEEeCCC
Q 001244 1086 DKERVLVLAATNRP 1099 (1116)
Q Consensus 1086 ~~~kVLVIaTTNrp 1099 (1116)
...++.||+||+..
T Consensus 271 ~~~~~rii~~~~~~ 284 (445)
T TIGR02915 271 IPVDVRIVCATNQD 284 (445)
T ss_pred eeeceEEEEecCCC
Confidence 12468999999874
No 233
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.35 E-value=2.6e-06 Score=98.21 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=47.7
Q ss_pred cc-cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC-------eeeEEec
Q 001244 948 FD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 1017 (1116)
Q Consensus 948 fd-dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------pfI~Is~ 1017 (1116)
|+ ++.|+++++.++.+.+.... . +.....+-++|+||||+|||+||++||+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a-------~-g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA-------Q-GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 89999999999887775322 1 11223357899999999999999999999955 7777765
No 234
>PRK06921 hypothetical protein; Provisional
Probab=98.33 E-value=1.5e-06 Score=96.94 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=45.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~ 1054 (1116)
.+++|+|++|||||+||.|||+++ |..++.++..+++...... .......+... ....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 589999999999999999999987 6778888876654432111 01112222222 2357999999953
No 235
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=3.6e-06 Score=96.54 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=87.4
Q ss_pred CcccccC-cHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe--------------
Q 001244 947 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1116)
Q Consensus 947 tfddIgG-ldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p-------------- 1011 (1116)
.|+.|.| ++.+++.|...+. .+ +.+..+||+||+|+||+++|+++|+.+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----------~~---~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----------KN---RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----------cC---CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 3677766 8888888888775 22 234578999999999999999999987321
Q ss_pred ----------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHH
Q 001244 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1116)
Q Consensus 1012 ----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~ 1077 (1116)
+..+... +..+ .-..++.+.+.+.. ....|+||||+|.|- ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 1111110 0100 12344554444332 234699999999882 345577888
Q ss_pred HhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1078 ~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
.++.. +..+++|.+|+.+..|-++|++|..
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhce
Confidence 87763 3457777788888899999999874
No 236
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.1e-06 Score=96.70 Aligned_cols=141 Identities=24% Similarity=0.395 Sum_probs=92.0
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC-----CeeeEEeccccccc
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSITSK 1023 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg-----~pfI~Is~seL~sk 1023 (1116)
+.+.+.++.++++...+...+. + ..| .++++||+||||||.+++.++.++. ..+++|+|-.+.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 3478888888888887654332 2 223 4699999999999999999999983 33889998765322
Q ss_pred c---------------ccch-HHHHHHHHHHHhc-CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCC
Q 001244 1024 W---------------FGEG-EKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1086 (1116)
Q Consensus 1024 ~---------------~Ges-Ek~Ir~lF~~A~k-~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~ 1086 (1116)
+ .|.+ ......+++...+ ...-||++||+|.|..... .++-.|+..-.. .
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~ 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----N 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----c
Confidence 1 1122 1223334443333 3456889999999974432 334444433222 2
Q ss_pred CCCEEEEEEeCCCC---CCcHHHHhhcCC
Q 001244 1087 KERVLVLAATNRPF---DLDEAVVRRLPR 1112 (1116)
Q Consensus 1087 ~~kVLVIaTTNrp~---~LD~ALlRRF~r 1112 (1116)
..+|.||+.+|..+ .||+-+.++|..
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s~l~~ 182 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKSSLGP 182 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhhccCc
Confidence 57899999999764 578888777653
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.28 E-value=1.2e-06 Score=87.80 Aligned_cols=98 Identities=21% Similarity=0.435 Sum_probs=64.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC---CeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
..|||+|++||||+++|++|+...+ .+|+.+++..+. .++++.+ ..++|||+|||.|-
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~----- 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS----- 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC-----
Confidence 4699999999999999999999884 477777776543 3455555 55899999999982
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC-------CCcHHHHhhcC
Q 001244 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-------DLDEAVVRRLP 1111 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~-------~LD~ALlRRF~ 1111 (1116)
......|+..+... ...++.+|+++..+- .+++.|..||.
T Consensus 83 -------~~~Q~~L~~~l~~~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 83 -------PEAQRRLLDLLKRQ---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp -------HHHHHHHHHHHHHC---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred -------HHHHHHHHHHHHhc---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 12223333333322 134567777776442 36677777775
No 238
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.27 E-value=1.6e-06 Score=103.27 Aligned_cols=136 Identities=23% Similarity=0.331 Sum_probs=82.1
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc-
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk- 1023 (1116)
+.++.|.....+.+.+.+... ......+||.|++||||+++|++|+..+ +.+|+.++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL------------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHH------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 456777766666666555421 1123469999999999999999999987 579999999876332
Q ss_pred ----cccchHH-------HHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------cC
Q 001244 1024 ----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1085 (1116)
Q Consensus 1024 ----~~GesEk-------~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~k 1085 (1116)
.+|.... .....|..| ..+.|||||||.|- ..+...|+..++... ..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP------------LDVQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC------------HHHHHHHHHHHhcCcEEeCCCCCe
Confidence 1221100 001123333 24799999999882 122223333332211 11
Q ss_pred CCCCEEEEEEeCCC-------CCCcHHHHhhc
Q 001244 1086 DKERVLVLAATNRP-------FDLDEAVVRRL 1110 (1116)
Q Consensus 1086 ~~~kVLVIaTTNrp-------~~LD~ALlRRF 1110 (1116)
...++.||+||+.. ..+.+.+..||
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l 301 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHHHh
Confidence 12457899999863 24556666666
No 239
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=6e-06 Score=94.79 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=76.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCe------------------------eeEEeccccccccccchHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1038 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~p------------------------fI~Is~seL~sk~~GesEk~Ir~lF~~ 1038 (1116)
.+..+||+||+|+|||++|+++|+.+.+. ++.+....- ++. -....++++...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 34689999999999999999999998431 222211000 000 122355555555
Q ss_pred Hhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcCC
Q 001244 1039 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1039 A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~r 1112 (1116)
+.. ....|++||++|.|- ....|.|+..++.. +.++++|.+|+.++.|.+.|++|...
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRCQQ 159 (328)
T ss_pred HhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhcee
Confidence 543 345699999999882 34567788877763 35788999999999999999998754
No 240
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=4.7e-06 Score=95.15 Aligned_cols=135 Identities=14% Similarity=0.198 Sum_probs=89.5
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe----------eeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p----------fI~Is 1016 (1116)
.|++|.|++.+++.|...+.. + +-+..+||+||+|+||+++|.++|+.+-.. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~----------~---rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ----------N---RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh----------C---CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 478999999999999988862 2 223589999999999999999999987221 11111
Q ss_pred ccccc---------cc--------ccc-------c-hHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHH
Q 001244 1017 MSSIT---------SK--------WFG-------E-GEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 1067 (1116)
Q Consensus 1017 ~seL~---------sk--------~~G-------e-sEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~ 1067 (1116)
.+++. ++ ..| . ....++.+...+.. ....|++||++|.|-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 12211 00 000 0 01245566555543 234699999999882
Q ss_pred HHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1068 lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
....|.||..|+.. + +.++|.+|+.++.|-+.|++|..
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRcq 175 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRCQ 175 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhce
Confidence 23456777777663 2 34667777889999999999863
No 241
>PRK09183 transposase/IS protein; Provisional
Probab=98.23 E-value=2.3e-06 Score=95.07 Aligned_cols=70 Identities=27% Similarity=0.440 Sum_probs=49.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccccc-chHHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~G-esEk~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
.+++|+||||||||+||.+|+..+ |..+..+++.++...+.. .....+..+|.... ..+.+++|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 589999999999999999998775 778888887776543321 11122444555432 35689999999865
No 242
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.21 E-value=5.9e-07 Score=106.32 Aligned_cols=100 Identities=23% Similarity=0.424 Sum_probs=63.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc-----cccchHH-------HHHHHHHHHhcCCCeEEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk-----~~GesEk-------~Ir~lF~~A~k~sPsIIfI 1049 (1116)
..+|++|++||||+++|++|+..+ +.+|+.++|..+... .+|.... .....|..|. .++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEE
Confidence 579999999999999999999876 579999999876332 2221100 0012333333 379999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHHhcCC-------CcCCCCCEEEEEEeCCC
Q 001244 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1050 DEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl-------~~k~~~kVLVIaTTNrp 1099 (1116)
||||.|- ..+...|+..++.. ......++.||+|||..
T Consensus 244 d~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 244 DEIGEMP------------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD 288 (457)
T ss_pred echhhCC------------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC
Confidence 9999882 12223333333221 11112458999999864
No 243
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.20 E-value=6.5e-06 Score=96.37 Aligned_cols=117 Identities=19% Similarity=0.366 Sum_probs=78.1
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~ 1058 (1116)
...++||||.|.|||+|+.|++++. +..++++....++..++-.....-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3469999999999999999999998 44677777777666554443333344566666 5579999999998654
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC---CcHHHHhhcCCeE
Q 001244 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPRRT 1114 (1116)
Q Consensus 1059 R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~---LD~ALlRRF~r~I 1114 (1116)
... ++..-.++|.+. + ..+-+|+.+-..|.. +.+.|++||..-+
T Consensus 191 ~~~---qeefFh~FN~l~---~------~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl 237 (408)
T COG0593 191 ERT---QEEFFHTFNALL---E------NGKQIVLTSDRPPKELNGLEDRLRSRLEWGL 237 (408)
T ss_pred hhH---HHHHHHHHHHHH---h------cCCEEEEEcCCCchhhccccHHHHHHHhcee
Confidence 322 333334444443 1 234455555555544 6689999998654
No 244
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.17 E-value=2.3e-06 Score=103.00 Aligned_cols=139 Identities=24% Similarity=0.308 Sum_probs=83.5
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC----CeeeEEec-----
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM----- 1017 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg----~pfI~Is~----- 1017 (1116)
.|.++.|...+++.+.-.+ .....++|+||||+|||+|++.|+..+. --.+.+..
T Consensus 189 d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 6777888777666543211 1235899999999999999999997652 11111100
Q ss_pred -c-----ccc-------------cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH
Q 001244 1018 -S-----SIT-------------SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1116)
Q Consensus 1018 -s-----eL~-------------sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~ 1078 (1116)
. .+. ...+|.....-...+..|.+ ++||||||+.+ + ..++..|+..
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~-------~~~~~~L~~~ 317 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----E-------RRTLDALREP 317 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----C-------HHHHHHHHHH
Confidence 0 000 00122221122346667766 89999999876 2 2333444443
Q ss_pred hcC---------CCcCCCCCEEEEEEeCCCC---------------------CCcHHHHhhcCCeEEC
Q 001244 1079 WDG---------LRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1079 Ldg---------l~~k~~~kVLVIaTTNrp~---------------------~LD~ALlRRF~r~I~V 1116 (1116)
|+. .......++.+|+|+|... .|..++++||+..+.|
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v 385 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEI 385 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEe
Confidence 321 1112246799999999642 4788999999987764
No 245
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.16 E-value=1.3e-05 Score=88.73 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=53.9
Q ss_pred CeEEEEcchhhhhcC-----ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCc
Q 001244 705 PLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1116)
Q Consensus 705 P~ILfidDie~~l~~-----~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~ 779 (1116)
+.||||||+|.+..+ ..+..+.|...++...+.+++|++....+. +.
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~-----------------------~~----- 157 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM-----------------------DY----- 157 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh-----------------------HH-----
Confidence 569999999994322 244566777778877788877776542111 00
Q ss_pred ccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHH
Q 001244 780 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1116)
Q Consensus 780 ~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~ql 823 (1116)
+. .....+..+|+..|.++.+..+++...|++.+
T Consensus 158 ~~----------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 158 FL----------SLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred HH----------hcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 00 11234778899999999999998887666544
No 246
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.13 E-value=6.3e-06 Score=101.68 Aligned_cols=50 Identities=32% Similarity=0.466 Sum_probs=41.8
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p 1011 (1116)
.-++++.|+++++..+..++.. . .+++|+||||||||++|+++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------~------~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------K------RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------C------CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578899999999988877752 1 379999999999999999999999543
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.10 E-value=1.1e-05 Score=78.68 Aligned_cols=97 Identities=16% Similarity=0.315 Sum_probs=60.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh--------CCeeeEEecccccc--c------------ccc--chHHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--K------------WFG--EGEKYVKAVFSLAS 1040 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el--------g~pfI~Is~seL~s--k------------~~G--esEk~Ir~lF~~A~ 1040 (1116)
+.++++||+|+|||++++.++..+ ..+++.++++.... . ... ........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 578999999999999999999988 78888888764321 0 001 12333445555555
Q ss_pred cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEe
Q 001244 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1116)
Q Consensus 1041 k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTT 1096 (1116)
.....+|+|||+|.|. + ..+++.+...++. .+-+++++|+.
T Consensus 85 ~~~~~~lviDe~~~l~----~-------~~~l~~l~~l~~~----~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF----S-------DEFLEFLRSLLNE----SNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH----T-------HHHHHHHHHHTCS----CBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC----C-------HHHHHHHHHHHhC----CCCeEEEEECh
Confidence 5555699999999874 1 4555555555551 23445555554
No 248
>PRK09087 hypothetical protein; Validated
Probab=98.09 E-value=1.4e-05 Score=87.19 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=59.2
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~ 1065 (1116)
.++|+||+|+|||+|+++++...++.++.. ..+.. .++..... .+|+||||+.+- ..+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~~ 103 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FDE 103 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CCH
Confidence 599999999999999999999877654433 22111 11111112 589999999762 123
Q ss_pred HHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC--C-CcHHHHhhcC
Q 001244 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--D-LDEAVVRRLP 1111 (1116)
Q Consensus 1066 ~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~--~-LD~ALlRRF~ 1111 (1116)
+.+-.++|.+. +..+.+||+++..|. . +.+.+++||.
T Consensus 104 ~~lf~l~n~~~---------~~g~~ilits~~~p~~~~~~~~dL~SRl~ 143 (226)
T PRK09087 104 TGLFHLINSVR---------QAGTSLLMTSRLWPSSWNVKLPDLKSRLK 143 (226)
T ss_pred HHHHHHHHHHH---------hCCCeEEEECCCChHHhccccccHHHHHh
Confidence 33444444443 124566666665553 2 3678988985
No 249
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.4e-06 Score=102.36 Aligned_cols=48 Identities=40% Similarity=0.614 Sum_probs=39.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
...|.|+.|++..|+.+.-+.. ++ .++||+|||||||||||+-+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------Gg-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------GG-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------cC-----CcEEEecCCCCchHHhhhhhcccC
Confidence 3479999999999999986654 22 589999999999999999877544
No 250
>PRK15115 response regulator GlrR; Provisional
Probab=98.08 E-value=8e-06 Score=96.57 Aligned_cols=109 Identities=26% Similarity=0.455 Sum_probs=66.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc-----ccchH-------HHHHHHHHHHhcCCCeEEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGE-------KYVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~-----~GesE-------k~Ir~lF~~A~k~sPsIIfI 1049 (1116)
..++|+|++|||||++|++|++.. +.+|+.++|..+...+ +|... .....+|..| ..++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEE
Confidence 369999999999999999999986 5799999998763321 11110 0001123333 3479999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHHhcCC-------CcCCCCCEEEEEEeCCCCCCcHHHHh-hc
Q 001244 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDKERVLVLAATNRPFDLDEAVVR-RL 1110 (1116)
Q Consensus 1050 DEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl-------~~k~~~kVLVIaTTNrp~~LD~ALlR-RF 1110 (1116)
||||.|- . .+...|+..++.. ......++.||+||+. .+...+.+ +|
T Consensus 235 ~~i~~l~-----~-------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~~~f 289 (444)
T PRK15115 235 DEIGDMP-----A-------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMARGEF 289 (444)
T ss_pred EccccCC-----H-------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHcCCc
Confidence 9999982 1 2222333333211 1111236899999986 35555444 44
No 251
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=1.7e-05 Score=97.89 Aligned_cols=103 Identities=15% Similarity=0.256 Sum_probs=67.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEE-ecc---cc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMS---SI 1020 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~I-s~s---eL 1020 (1116)
..+++++.++++.++.+..++..... . ..+..-++|+||||||||++++.+|.+++..+++. +.. ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 56899999999999988877653110 0 12334599999999999999999999998776552 111 00
Q ss_pred c----------ccc--ccchHHHHHHHHHHHhc----------CCCeEEEEccccccc
Q 001244 1021 T----------SKW--FGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1021 ~----------sk~--~GesEk~Ir~lF~~A~k----------~sPsIIfIDEID~Ll 1056 (1116)
. ..+ +......++.++..|.. ....|||||||+.++
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~ 208 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQF 208 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhc
Confidence 0 000 11122344555555542 245799999999876
No 252
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.07 E-value=5.1e-06 Score=93.30 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=91.5
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe------eeE
Q 001244 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FIN 1014 (1116)
Q Consensus 941 ~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------fI~ 1014 (1116)
++.....++++.+.+++...+.+.... .+ ..++|+|||||||||....+.|..+-.+ +..
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~----------~~----lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~le 98 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGM----------PG----LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLE 98 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccC----------CC----CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHH
Confidence 334455788889999888888876432 21 1389999999999999999999988332 222
Q ss_pred EeccccccccccchHHHHHHHHHHHhc-------CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCC
Q 001244 1015 ISMSSITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1116)
Q Consensus 1015 Is~seL~sk~~GesEk~Ir~lF~~A~k-------~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~ 1087 (1116)
++.++-.+ . ...+.-...|..++. ..+..|++||.|.+. ...|.++++++..+ .
T Consensus 99 lnaSd~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~-----------t 159 (360)
T KOG0990|consen 99 LNASDDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKY-----------T 159 (360)
T ss_pred hhccCccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHh-----------c
Confidence 33332111 1 112223345555553 267899999999883 23344555544333 3
Q ss_pred CCEEEEEEeCCCCCCcHHHHhhcCC
Q 001244 1088 ERVLVLAATNRPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1088 ~kVLVIaTTNrp~~LD~ALlRRF~r 1112 (1116)
.++.++..+|.+..+.+++..||.+
T Consensus 160 ~n~rF~ii~n~~~ki~pa~qsRctr 184 (360)
T KOG0990|consen 160 ANTRFATISNPPQKIHPAQQSRCTR 184 (360)
T ss_pred cceEEEEeccChhhcCchhhccccc
Confidence 5677778889999999999997754
No 253
>CHL00181 cbbX CbbX; Provisional
Probab=98.06 E-value=1.3e-05 Score=90.46 Aligned_cols=84 Identities=23% Similarity=0.178 Sum_probs=58.7
Q ss_pred CCeEEEEcchhhhhcC------ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCC
Q 001244 704 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 777 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~------~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p 777 (1116)
.+-||||||+|.+... ..+..+.|...|+.-.++++||++....+ +|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-----------------------~~~--- 175 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-----------------------MDK--- 175 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH---
Confidence 3469999999984321 35677777788887778899998876211 110
Q ss_pred CcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhh
Q 001244 778 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER 825 (1116)
Q Consensus 778 ~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~ 825 (1116)
|- .....+.++|++.|.|+++..+++...|+..+..
T Consensus 176 --~~----------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 176 --FY----------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred --HH----------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 00 0113588899999999999999998877766543
No 254
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=98.06 E-value=6.6e-06 Score=68.37 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.5
Q ss_pred EEEeccC-ccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeec
Q 001244 154 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 207 (1116)
Q Consensus 154 ~t~G~~~-~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~-~~G~v~vNg~~~ 207 (1116)
++|||.. .|++.+.++.+|..||+|..... + ..+|++.+ ++|+ +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~--~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-G--RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-C--eEEEEECCCCCCe-eECCEEC
Confidence 5899999 99999999999999999987543 3 47899999 8888 8999875
No 255
>PF13173 AAA_14: AAA domain
Probab=98.05 E-value=1.5e-05 Score=78.90 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=47.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
+-++|+||.|+|||++++.+++.+. -.++.+++.+.........+ +.+.|.........+||||||..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3689999999999999999999886 77888887665332111111 223333322225689999999877
No 256
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.04 E-value=8.3e-06 Score=101.11 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.8
Q ss_pred CCCceeE---ecceEEEeccCccce-----eecCCCCCccceEEEEeecCCcceEEEEEecC-cceEEECCee-----cC
Q 001244 143 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 208 (1116)
Q Consensus 143 ~~p~~~i---~~~~~t~G~~~~cd~-----~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~-~G~v~vNg~~-----~~ 208 (1116)
+...|+| .+--|+|||..+||+ .++|+.+|+.|.+|... ++. .||||.+| ||| ||||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 4456888 678899999999997 99999999999999986 333 78999876 899 799888 55
Q ss_pred CCceEEeeCCCEEEEccCCCeeE
Q 001244 209 KDSQVVLRGGDELVFSPSGKHSY 231 (1116)
Q Consensus 209 k~~~~~L~~GdEi~f~~~~~~ay 231 (1116)
-|..+.|++||+|.|+..++.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 67899999999999999887656
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.03 E-value=2.8e-05 Score=77.45 Aligned_cols=108 Identities=19% Similarity=0.308 Sum_probs=63.8
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc----------------------ccc--chHHHHHHHHHHH
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFG--EGEKYVKAVFSLA 1039 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk----------------------~~G--esEk~Ir~lF~~A 1039 (1116)
++|+||||+|||+++..++..+ +.+++.++....... +.. .........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 567777766433210 000 1112223345666
Q ss_pred hcCCCeEEEEccccccccCCCC--CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1040 SKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~Llg~R~~--~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
....+.+|+|||+..+...... ........+.+..++..... .++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK------GGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc------CCceEEEEEecCC
Confidence 7778899999999988633210 01112233444444444322 3456666665443
No 258
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.01 E-value=5.2e-06 Score=98.58 Aligned_cols=136 Identities=21% Similarity=0.297 Sum_probs=79.6
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc-
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW- 1024 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~- 1024 (1116)
..+.|.......+.+.+... ......+++.|.+||||+++|++|+... +.+|+.++|..+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL------------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHH------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 34666666666665555321 1122479999999999999999999886 6799999998763322
Q ss_pred ----ccchHH-------HHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------cCC
Q 001244 1025 ----FGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKD 1086 (1116)
Q Consensus 1025 ----~GesEk-------~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~k~ 1086 (1116)
+|.... .....|..| ..++||||||+.|- ..+...|+..++... ...
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~ei~~l~------------~~~q~~ll~~l~~~~~~~~~~~~~~ 266 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQA---DGGTLFLDEIGDMP------------LDAQTRLLRVLADGEFYRVGGRTPI 266 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEEC---CCCeEEEEchhhCC------------HHHHHHHHHHHhcCcEEECCCCcee
Confidence 221100 001122222 35899999999882 112223333332110 111
Q ss_pred CCCEEEEEEeCCC-------CCCcHHHHhhcC
Q 001244 1087 KERVLVLAATNRP-------FDLDEAVVRRLP 1111 (1116)
Q Consensus 1087 ~~kVLVIaTTNrp-------~~LD~ALlRRF~ 1111 (1116)
...+.||+||+.. ..+.+.+..|+.
T Consensus 267 ~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~ 298 (463)
T TIGR01818 267 KVDVRIVAATHQNLEALVRQGKFREDLFHRLN 298 (463)
T ss_pred eeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC
Confidence 2357899999864 235556666654
No 259
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=7.8e-05 Score=85.59 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=74.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCe------------------------eeEEeccccccccccchHHHHHHHHHHH
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSLA 1039 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~p------------------------fI~Is~seL~sk~~GesEk~Ir~lF~~A 1039 (1116)
+..+||+||.|+||+.+|+++|+.+-+. |+.+... .++.+ ....+|++-..+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHHHHH
Confidence 4689999999999999999999988321 1112110 01111 233455554444
Q ss_pred hc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1040 SK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1040 ~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
.. ....|++||++|.|- ....|.||..++.- +.++++|.+|+.++.|-+.|++|..
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEEP----RPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred hhccccCCceEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhCchHHHhhce
Confidence 33 334699999999882 34557788887763 4678889999999999999999864
No 260
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=4.9e-05 Score=87.77 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=75.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCee-------------------------eEEeccccccc------------c-
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANF-------------------------INISMSSITSK------------W- 1024 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pf-------------------------I~Is~seL~sk------------~- 1024 (1116)
-+..+||+||+|+||+++|+++|+.+.+.. +.+........ +
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 447899999999999999999999884321 11111100000 0
Q ss_pred -cc---------chHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCE
Q 001244 1025 -FG---------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1116)
Q Consensus 1025 -~G---------esEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kV 1090 (1116)
.| -.-..|+.+...+.. ....|+|||++|.|- ...-|.||..|+.- +.++
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP----p~~t 163 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEEP----PPGT 163 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcCC----CcCc
Confidence 00 012345555554432 233599999999882 34567888888753 4678
Q ss_pred EEEEEeCCCCCCcHHHHhhcC
Q 001244 1091 LVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1091 LVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
++|.+|++++.|.+.|++|..
T Consensus 164 ~fiL~t~~~~~LLpTI~SRcq 184 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRCR 184 (342)
T ss_pred EEEEEECChhhCcHHHHhcCE
Confidence 999999999999999999874
No 261
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.94 E-value=6.2e-05 Score=95.63 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=30.9
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
.+.+||+||+| .++++|||+||+.++.++.-++.
T Consensus 347 ~~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 347 GPILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 35799999999 99999999999999999888874
No 262
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00011 Score=84.80 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=75.5
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCe------------------------eeEEeccccccccccchHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1038 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~p------------------------fI~Is~seL~sk~~GesEk~Ir~lF~~ 1038 (1116)
-+..+||+||+|+||+++|.++|..+-+. |+.+.... .... -....++++-+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKSS--LGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cccc--CCHHHHHHHHHH
Confidence 45789999999999999999999988321 11121100 0000 112344444444
Q ss_pred Hh----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcCC
Q 001244 1039 AS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1039 A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~r 1112 (1116)
+. .....|+|||++|.|- ...-|.||..|+.- +.++++|.+|+.++.|-+.|++|...
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEEP----PENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred HhhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHhcccc
Confidence 43 3344699999999882 34557888888763 46789999999999999999998753
No 263
>PRK04132 replication factor C small subunit; Provisional
Probab=97.92 E-value=3.6e-05 Score=97.44 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCeEEEEEC--CCCCchHHHHHHHHHHh-----CCeeeEEeccccccccccchHHHHHHHHHHHhcC------CCeEEEE
Q 001244 983 PCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKI------APSVVFV 1049 (1116)
Q Consensus 983 p~~gILL~G--PPGTGKT~LArAIA~el-----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~------sPsIIfI 1049 (1116)
|.-+-+..| |++.|||++|.+||+++ +.+|+++++++..+. ..++++...+... ...||||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 333456667 99999999999999998 668999999874332 3455555443322 2369999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1050 DEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
||+|.|- ....+.|+..|+.. ..++.+|++||.++.|.++|++|.
T Consensus 637 DEaD~Lt------------~~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC 681 (846)
T PRK04132 637 DEADALT------------QDAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC 681 (846)
T ss_pred ECcccCC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc
Confidence 9999982 22345566666543 357899999999999999999976
No 264
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.88 E-value=1.2e-05 Score=91.32 Aligned_cols=134 Identities=25% Similarity=0.340 Sum_probs=84.3
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc-
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 1021 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~- 1021 (1116)
..|+.|.+....++.+.+.... +. -+. ..+||.|.+||||-++|++.+..+ ..||+-++|+.+-
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k-------~A--mlD---APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQK-------LA--MLD---APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHH-------hh--ccC---CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 4567777776666555443321 10 112 349999999999999999999887 7899999998773
Q ss_pred ----cccccchH--HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEE
Q 001244 1022 ----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1116)
Q Consensus 1022 ----sk~~GesE--k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaT 1095 (1116)
+..||... .--..+|+.|.+ +.+|+|||..|. +..|..+.++++.=....-|-..+-...|.||||
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmS-----p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIca 340 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMS-----PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICA 340 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcC-----HHHHHHHHHHhcCCceeecCCcceEEEEEEEEec
Confidence 33455433 334679999988 899999999883 2223333333221110111111111346999999
Q ss_pred eCCC
Q 001244 1096 TNRP 1099 (1116)
Q Consensus 1096 TNrp 1099 (1116)
|..+
T Consensus 341 tq~n 344 (511)
T COG3283 341 TQVN 344 (511)
T ss_pred cccc
Confidence 9763
No 265
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.87 E-value=1.1e-05 Score=95.18 Aligned_cols=68 Identities=22% Similarity=0.487 Sum_probs=48.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc-----ccchHHH-------HHHHHHHHhcCCCeEEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~-----~GesEk~-------Ir~lF~~A~k~sPsIIfI 1049 (1116)
..++++|.+||||+++|+++.... +.+|+.++|..+...+ +|..... ....|..| ..++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeEC---CCCEEEE
Confidence 579999999999999999999876 5799999998764322 1211000 01122222 3589999
Q ss_pred cccccc
Q 001244 1050 DEVDSM 1055 (1116)
Q Consensus 1050 DEID~L 1055 (1116)
|||+.|
T Consensus 240 dei~~l 245 (441)
T PRK10365 240 DEIGDI 245 (441)
T ss_pred eccccC
Confidence 999998
No 266
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.84 E-value=4e-05 Score=87.22 Aligned_cols=81 Identities=33% Similarity=0.478 Sum_probs=60.0
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh--CCeeeEEecccccccccc
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSKWFG 1026 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el--g~pfI~Is~seL~sk~~G 1026 (1116)
+-++|+.+++++.--.+.+ .+.+. ...++|||.||||||||.||-+||+++ +.||+.++.+++.+.-+.
T Consensus 39 dG~VGQ~~AReAaGvIv~m-------ik~gk--~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k 109 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM-------IKQGK--MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK 109 (450)
T ss_pred CcccchHHHHHhhhHHHHH-------HHhCc--ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence 5678998888776544443 12232 234799999999999999999999999 589999999999776555
Q ss_pred chHHHHHHHHHHH
Q 001244 1027 EGEKYVKAVFSLA 1039 (1116)
Q Consensus 1027 esEk~Ir~lF~~A 1039 (1116)
.+|. +.+.|..|
T Consensus 110 KTE~-L~qa~Rra 121 (450)
T COG1224 110 KTEA-LTQALRRA 121 (450)
T ss_pred HHHH-HHHHHHHh
Confidence 5544 44555555
No 267
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.84 E-value=7e-05 Score=78.50 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=63.9
Q ss_pred eeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeecCCCceEEeeCCCEEEEcc
Q 001244 147 LSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (1116)
Q Consensus 147 ~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~-~~G~v~vNg~~~~k~~~~~L~~GdEi~f~~ 225 (1116)
..+....+|+||+..+++.|+|+.+|..||.|+..+.. .+|||.+ +||| ||||.++.. .+.|+.||.|.|+.
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEEEECc
Confidence 34445689999999999999999999999999987544 6667766 6799 799999998 89999999999987
Q ss_pred CCC
Q 001244 226 SGK 228 (1116)
Q Consensus 226 ~~~ 228 (1116)
...
T Consensus 157 ~~~ 159 (191)
T COG1716 157 TLA 159 (191)
T ss_pred cce
Confidence 754
No 268
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.83 E-value=6.2e-05 Score=84.86 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=57.0
Q ss_pred CCeEEEEcchhhhhcC------ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCC
Q 001244 704 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 777 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~------~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p 777 (1116)
.+.||||||++.+... ..+..+.|...|+.-.++++||++.+... +|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-----------------------~~~--- 174 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-----------------------MDS--- 174 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH---
Confidence 4479999999983221 24555667777777677899998877210 111
Q ss_pred CcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhh
Q 001244 778 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER 825 (1116)
Q Consensus 778 ~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~ 825 (1116)
|- .....+.++|+..|.|+++.++++...|...+..
T Consensus 175 --~~----------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 175 --FF----------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred --HH----------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 10 1123588899999999999999998766655443
No 269
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00017 Score=82.61 Aligned_cols=112 Identities=22% Similarity=0.265 Sum_probs=73.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCe---------------------eeEEe-cccccc-cc-ccchHHHHHHHHHHH
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGAN---------------------FINIS-MSSITS-KW-FGEGEKYVKAVFSLA 1039 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~p---------------------fI~Is-~seL~s-k~-~GesEk~Ir~lF~~A 1039 (1116)
+..+||+||+|+||+++|.++|+.+-+. |+.+. .++-.+ +. ..-....|+++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 4679999999999999999999887321 11111 000000 00 000133566666655
Q ss_pred hcCC----CeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1040 SKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1040 ~k~s----PsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
...+ ..|++||++|.|- ....|.||..|+.- ..++++|.+|+.++.|-+.|++|..
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEP----SPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHhhhe
Confidence 4433 3599999999882 34457777777663 3567888889999999999999874
No 270
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.80 E-value=9.4e-05 Score=87.49 Aligned_cols=85 Identities=26% Similarity=0.375 Sum_probs=61.8
Q ss_pred ccCCCcccccccccccccchhHHHHHHhhhhhhcccccccccc-CCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCe
Q 001244 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1116)
Q Consensus 443 vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~-~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~ 521 (1116)
+..+++|.-.+++| .+=-|+.|.+|..|+|-|++.-...... .+.....+.|||.||+| .++++|||+||+.++++
T Consensus 59 ~~~p~~i~~~L~~~-ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lAr~lA~~l~~p 135 (412)
T PRK05342 59 LPTPKEIKAHLDQY-VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLAQTLARILDVP 135 (412)
T ss_pred CCCHHHHHHHHhhH-eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHHHHHHHHhCCC
Confidence 44555555555542 1224889999999999887775332111 13444568899999999 99999999999999999
Q ss_pred EEEEecccC
Q 001244 522 LLIVDSLLL 530 (1116)
Q Consensus 522 LL~lDs~~l 530 (1116)
+..+|.+.+
T Consensus 136 f~~id~~~l 144 (412)
T PRK05342 136 FAIADATTL 144 (412)
T ss_pred ceecchhhc
Confidence 999997654
No 271
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.78 E-value=0.00022 Score=80.71 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=72.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEecccc----------cc----ccc--cchHHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI----------TS----KWF--GEGEKYVKAVFSLA 1039 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~seL----------~s----k~~--GesEk~Ir~lF~~A 1039 (1116)
.++||+|++|.|||++++..+... .+|++.+.++.- +. .+- ....+...++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999765 357888877532 11 010 11223334455666
Q ss_pred hcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC--CCCCCcHHHHhhcCC
Q 001244 1040 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN--RPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN--rp~~LD~ALlRRF~r 1112 (1116)
+....-+|+||||+.++.-. ....+.++|.|. .+...-.-.++.+||-. +.-.-|+.+.+||..
T Consensus 142 r~~~vrmLIIDE~H~lLaGs-----~~~qr~~Ln~LK----~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~ 207 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGS-----YRKQREFLNALK----FLGNELQIPIVGVGTREAYRALRTDPQLASRFEP 207 (302)
T ss_pred HHcCCcEEEeechHHHhccc-----HHHHHHHHHHHH----HHhhccCCCeEEeccHHHHHHhccCHHHHhccCC
Confidence 77788999999999976211 112234444333 23222234555566533 223467888889864
No 272
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00026 Score=81.19 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=75.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCC-----------------------eeeEEeccccccccccchHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGA-----------------------NFINISMSSITSKWFGEGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~-----------------------pfI~Is~seL~sk~~GesEk~Ir~lF~~A 1039 (1116)
-+..+||+||.|+||+.+|+++|+.+-+ .|+.+.... .++.+ ....|+.+-..+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 3468999999999999999999998822 122222110 00111 123455554444
Q ss_pred hcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1040 SKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1040 ~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
... ...|++||++|.|- ...-|.||..++.- +.++++|.+|+.++.|-+.|++|..
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEEP----APNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred hhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChhhChHHHHhcce
Confidence 332 24699999999882 34557788887763 4578999999999999999999874
No 273
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=4.9e-05 Score=85.97 Aligned_cols=77 Identities=29% Similarity=0.379 Sum_probs=55.8
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc-ccccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE 1027 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s-k~~Ge 1027 (1116)
|+|++++|+.+.-++..-.++..+-...+-.-.+++||+.||+|+|||.+||-+|+-.++||+++.+..+.. .|+|.
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 789999998876555432222222222221234589999999999999999999999999999999887753 46664
No 274
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.75 E-value=7.9e-05 Score=85.92 Aligned_cols=82 Identities=35% Similarity=0.482 Sum_probs=55.3
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC--CeeeEEeccccccccc
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWF 1025 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~seL~sk~~ 1025 (1116)
.+.++|+.+++++.--.+.+. ..+.+ ..+++||.||||||||.||-+||+++| .||+.++.+++.+.-+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mI-------k~~K~--aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~ 93 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMI-------KEGKI--AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV 93 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHH-------HTT----TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred cccccChHHHHHHHHHHHHHH-------hcccc--cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence 456899999998876655532 22222 347999999999999999999999995 9999999999977644
Q ss_pred cchHHHHHHHHHHH
Q 001244 1026 GEGEKYVKAVFSLA 1039 (1116)
Q Consensus 1026 GesEk~Ir~lF~~A 1039 (1116)
..+| .+.+.|..|
T Consensus 94 kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 94 KKTE-ALTQAFRRA 106 (398)
T ss_dssp -HHH-HHHHHHHCS
T ss_pred CchH-HHHHHHHHh
Confidence 4443 344444444
No 275
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.74 E-value=3.9e-05 Score=94.88 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=41.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
...|+++.|+++++..|...+.. . ..+||+||||||||++|+++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------~------~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------R------RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------C------CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 35789999999999988876652 1 3799999999999999999998773
No 276
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.71 E-value=0.00019 Score=87.17 Aligned_cols=156 Identities=21% Similarity=0.183 Sum_probs=88.1
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeE-Eeccccc--cccc-
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSIT--SKWF- 1025 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~-Is~seL~--sk~~- 1025 (1116)
.|.+++++|+.|.-.+ +-.....+..++-.+..-+|||+|.||||||.|.+.+++-+---.+. =..+.-. .-|+
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4789999998875322 22333334444334455699999999999999999999987221111 0011000 0000
Q ss_pred --cchHHHHH--HHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHH--HHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1026 --GEGEKYVK--AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN--EFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1026 --GesEk~Ir--~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~Iln--eLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
+++.+.+- ..+-.+ .-+|=.|||+|.|- ......+-++++ ++-...-|+...-+.+.-|||++|..
T Consensus 508 rd~dtkqlVLesGALVLS---D~GiCCIDEFDKM~-----dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~ 579 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLS---DNGICCIDEFDKMS-----DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPI 579 (804)
T ss_pred ecCccceeeeecCcEEEc---CCceEEchhhhhhh-----HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccc
Confidence 01111000 011111 23678899999982 111222222222 22233445555567889999999954
Q ss_pred C-------------CCcHHHHhhcCCeEE
Q 001244 1100 F-------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1100 ~-------------~LD~ALlRRF~r~I~ 1115 (1116)
. .|++.|++||+.++.
T Consensus 580 ~skynp~k~i~eNI~LpptLLSRFDLIyl 608 (804)
T KOG0478|consen 580 RSKYNPNKSIIENINLPPTLLSRFDLIFL 608 (804)
T ss_pred cccCCCCCchhhccCCChhhhhhhcEEEE
Confidence 3 499999999997764
No 277
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.68 E-value=9.3e-05 Score=78.32 Aligned_cols=24 Identities=50% Similarity=0.801 Sum_probs=22.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..++|+||.|+|||+|++.+.+.+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 579999999999999999999988
No 278
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.67 E-value=2.3e-05 Score=96.24 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=81.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEeccccccccccch--HHHH--------HHHHHHHhcCCCeEEEEccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 1052 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~seL~sk~~Ges--Ek~I--------r~lF~~A~k~sPsIIfIDEI 1052 (1116)
.||||.|++||||++++++++.-+. .||+.+..+.-....+|.. +..+ ..++..|.+ +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 5899999999999999999999984 5999877665444455543 2211 223444444 79999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHh---------cCCCcCCCCCEEEEEEeCCC---CCCcHHHHhhcCCeEEC
Q 001244 1053 DSMLGRRENPGEHEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1053 D~Llg~R~~~~~~~~lr~IlneLL~~L---------dgl~~k~~~kVLVIaTTNrp---~~LD~ALlRRF~r~I~V 1116 (1116)
..+ . ..++..|+.-| ++.......+++||||-|.. +.|.+++++||+..|.|
T Consensus 103 n~~-----~-------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v 166 (584)
T PRK13406 103 ERL-----E-------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDL 166 (584)
T ss_pred ccC-----C-------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEc
Confidence 877 2 34445555544 44444446789999985432 35999999999988764
No 279
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00022 Score=82.02 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=72.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCC-------------------------eeeEEecccccccccc-----chHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSITSKWFG-----EGEKYV 1032 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~-------------------------pfI~Is~seL~sk~~G-----esEk~I 1032 (1116)
-+..+||+||+|+|||++|+++|+.+.+ .|+.+....-.. --| -....|
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~-~~g~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP-ENGRKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc-cccccCCCcCHHHH
Confidence 3468999999999999999999998732 233343211000 001 123456
Q ss_pred HHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh
Q 001244 1033 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108 (1116)
Q Consensus 1033 r~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR 1108 (1116)
|++.+.+... ...|++||+++.|- ....+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 6666666542 34599999999882 234455666666542 235666788888899999998
Q ss_pred hcC
Q 001244 1109 RLP 1111 (1116)
Q Consensus 1109 RF~ 1111 (1116)
|..
T Consensus 163 Rc~ 165 (325)
T PRK08699 163 RCR 165 (325)
T ss_pred Hhh
Confidence 764
No 280
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.67 E-value=5e-05 Score=93.80 Aligned_cols=170 Identities=26% Similarity=0.298 Sum_probs=95.7
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHH
Q 001244 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 927 ~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
..+....+.+.++| .|.|++.+|+.|.-.+. -........+.-.+..-+|||.|.||||||.|.+.+++
T Consensus 273 ~~~i~~~l~~SiaP---------sIyG~e~VKkAilLqLf--gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~ 341 (682)
T COG1241 273 RPDIYDILIKSIAP---------SIYGHEDVKKAILLQLF--GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAK 341 (682)
T ss_pred CCcHHHHHHHHhcc---------cccCcHHHHHHHHHHhc--CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHh
Confidence 44455555566666 47899999988753332 12222222222123346899999999999999999999
Q ss_pred HhCCeee-EEeccc---cccccccc---hHHHH-HHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH
Q 001244 1007 EAGANFI-NISMSS---ITSKWFGE---GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1116)
Q Consensus 1007 elg~pfI-~Is~se---L~sk~~Ge---sEk~I-r~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~ 1078 (1116)
.+-..++ .-..++ |..-.... .+..+ ...+-.|. .+|..|||+|.| +..+..++-+.+.+-...
T Consensus 342 ~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD---~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIs 413 (682)
T COG1241 342 LAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLAD---GGVCCIDEFDKM-----NEEDRVAIHEAMEQQTIS 413 (682)
T ss_pred hCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEec---CCEEEEEeccCC-----ChHHHHHHHHHHHhcEee
Confidence 8833332 222221 11110100 01111 11222333 489999999988 222222222222222222
Q ss_pred h--cCCCcCCCCCEEEEEEeCCCC-------------CCcHHHHhhcCCeEE
Q 001244 1079 W--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1079 L--dgl~~k~~~kVLVIaTTNrp~-------------~LD~ALlRRF~r~I~ 1115 (1116)
+ -|+...-+.+.-|+||+|..+ +|++.|++||+..+.
T Consensus 414 IaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 414 IAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred ecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 2 233334467888999999775 489999999997664
No 281
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.60 E-value=0.00035 Score=82.59 Aligned_cols=84 Identities=29% Similarity=0.411 Sum_probs=60.0
Q ss_pred cCCCcccccccccccccchhHHHHHHhhhhhhccccccc--ccc-CCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCC
Q 001244 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA--KYA-SDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1116)
Q Consensus 444 v~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~--k~~-~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a 520 (1116)
..+++|.-.++++ .+--|+.|..|.-|.|-|.+.-... ... .+..-....|||.||+| .++++|||+||+.+++
T Consensus 66 ~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 66 PTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTLLAQTLARILNV 142 (413)
T ss_pred CCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHHHHHHHHHhcCC
Confidence 3444454455543 2335899999999999998874331 111 12233457999999999 9999999999999999
Q ss_pred eEEEEecccC
Q 001244 521 RLLIVDSLLL 530 (1116)
Q Consensus 521 ~LL~lDs~~l 530 (1116)
++.++|.+.|
T Consensus 143 pf~~~da~~L 152 (413)
T TIGR00382 143 PFAIADATTL 152 (413)
T ss_pred CeEEechhhc
Confidence 9998887554
No 282
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.59 E-value=2.3e-05 Score=94.69 Aligned_cols=120 Identities=28% Similarity=0.366 Sum_probs=81.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh--CCeeeEEeccccc-----cccccchHH--------HHHHHHHHHhcCCCeEEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT-----SKWFGEGEK--------YVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el--g~pfI~Is~seL~-----sk~~GesEk--------~Ir~lF~~A~k~sPsIIfI 1049 (1116)
..+||.|.+||||-.+|++|.+.. ..||+.++|..+- +.|||.... -.+..|+.|.. ..+|+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHH
Confidence 369999999999999999999988 5799999998763 445554322 22334444444 79999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh-hcCCeEE
Q 001244 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR-RLPRRTC 1115 (1116)
Q Consensus 1050 DEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR-RF~r~I~ 1115 (1116)
|||..| +-..|..+.+|+++-...--|... ....|.||+||++ +|..-+.. ||.+.+|
T Consensus 414 deIgd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~--dl~~lv~~g~fredLy 472 (606)
T COG3284 414 DEIGDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHR--DLAQLVEQGRFREDLY 472 (606)
T ss_pred HHhhhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCc--CHHHHHHcCCchHHHH
Confidence 999988 334455566666655443333333 4567899999998 44444433 6665543
No 283
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.58 E-value=0.0012 Score=75.73 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=41.1
Q ss_pred cccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001244 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1116)
Q Consensus 452 sf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~ 524 (1116)
+|++|-.. ++.+..|....-..... ....+.+||+||+| ++++.||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 57776555 66666665444322111 12356799999999 99999999999999876543
No 284
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.56 E-value=0.00053 Score=80.01 Aligned_cols=102 Identities=23% Similarity=0.373 Sum_probs=57.4
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHhCC-eeeEEeccccccc-------cccchHHHHHHHHHHHhcCCCeEEEEccc
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSK-------WFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~elg~-pfI~Is~seL~sk-------~~GesEk~Ir~lF~~A~k~sPsIIfIDEI 1052 (1116)
..+++|+.|+|++|+|||+|.-.....+.. .-.++.--.++.. +.|.. .-+..+-....+ .-.+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 346799999999999999999999888743 1111111111111 11111 112222222222 1249999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1053 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1053 D~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
..- +.++--.+.+++..+. ..+++||+|+|++
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 733 2222234455555553 3579999999975
No 285
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00035 Score=74.39 Aligned_cols=79 Identities=23% Similarity=0.425 Sum_probs=53.0
Q ss_pred CCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccc-----------------------cchHHH
Q 001244 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKY 1031 (1116)
Q Consensus 978 ~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~-----------------------GesEk~ 1031 (1116)
+|+ .+..-++|+||||+|||+++..++.+. +...+.++...+....+ .+....
T Consensus 7 GGi-~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 7 GGV-ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 443 344678999999999999999988655 67788888764210000 011122
Q ss_pred HHHHHHHHhcCCCeEEEEcccccccc
Q 001244 1032 VKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1032 Ir~lF~~A~k~sPsIIfIDEID~Llg 1057 (1116)
+..+...+.+..+.+|+||-|..++.
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 44455555566789999999998863
No 286
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.53 E-value=0.00047 Score=83.81 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=48.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
..+.+|+.-..+..++++..+...+ .. ..+.+-+||+||+|||||++++.||+++|+.+++...+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~------~~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMF------SG---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHh------cc---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 5678888888877777777775321 11 12234678899999999999999999999999986433
No 287
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.52 E-value=5.2e-06 Score=95.41 Aligned_cols=150 Identities=29% Similarity=0.298 Sum_probs=71.1
Q ss_pred cccCcHHHHHHHHHHHHccccChhh--hhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEE-ec---cccccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPEL--FCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SM---SSITSK 1023 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pel--f~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~I-s~---seL~sk 1023 (1116)
.|.|++.+|..+. +.+-.... ...+...+..-+|||.|.||||||.|.+.+++.....++.- .. ..|...
T Consensus 25 ~i~g~~~iK~ail----l~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAIL----LQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHC----CCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHH----HHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccce
Confidence 4778888776663 22211110 00111123346899999999999999998876663333221 11 112111
Q ss_pred cc---cchHHHHH-HHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH----h--cCCCcCCCCCEEEE
Q 001244 1024 WF---GEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN----W--DGLRTKDKERVLVL 1093 (1116)
Q Consensus 1024 ~~---GesEk~Ir-~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~----L--dgl~~k~~~kVLVI 1093 (1116)
.. ...+..+. ..+-.|.+ +|++|||+|.|- ..+ +..+.+.|.. + .|+...-+.+.-|+
T Consensus 101 ~~~d~~~~~~~leaGalvlad~---GiccIDe~dk~~-----~~~----~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLADG---GICCIDEFDKMK-----EDD----RDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHH----HHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred eccccccceeEEeCCchhcccC---ceeeeccccccc-----chH----HHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 10 01111211 34556655 899999999882 112 2222222222 1 11222234678999
Q ss_pred EEeCCCC-------------CCcHHHHhhcCCeEE
Q 001244 1094 AATNRPF-------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1094 aTTNrp~-------------~LD~ALlRRF~r~I~ 1115 (1116)
||+|... .+++.|++||+-.+.
T Consensus 169 aa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~ 203 (331)
T PF00493_consen 169 AAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFL 203 (331)
T ss_dssp EEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEEC
T ss_pred HHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEE
Confidence 9999765 488899999997654
No 288
>PHA00729 NTP-binding motif containing protein
Probab=97.50 E-value=0.00025 Score=77.42 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=41.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc-----ccccccchH---HHHHHHHHHHhcCCCeEEEEccccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-----TSKWFGEGE---KYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL-----~sk~~GesE---k~Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
.+|+|+|+||||||+||.+||+.++..+..+..... ...++-..+ ..+...+... ....+|+|||+..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~--~~~dlLIIDd~G~~~ 95 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDND--YRIPLIIFDDAGIWL 95 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcC--CCCCEEEEeCCchhh
Confidence 479999999999999999999998644333322211 001111111 2222223221 223589999998775
No 289
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.50 E-value=0.0001 Score=80.31 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=41.6
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc--ccc----cc----ccchHHHHHHHHHHHh--cCCCeEEEE
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITS----KW----FGEGEKYVKAVFSLAS--KIAPSVVFV 1049 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se--L~s----k~----~GesEk~Ir~lF~~A~--k~sPsIIfI 1049 (1116)
+.+..+||||+||+|||++|+.++. ..-++..+.+. +.. .. ....-..+.+.+..+. .....+|||
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVI 87 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVI 87 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEE
Confidence 3346799999999999999999973 23333333321 000 00 0111122233333332 234679999
Q ss_pred ccccccc
Q 001244 1050 DEVDSML 1056 (1116)
Q Consensus 1050 DEID~Ll 1056 (1116)
|+|+.|.
T Consensus 88 DsI~~l~ 94 (220)
T TIGR01618 88 DNISALQ 94 (220)
T ss_pred ecHHHHH
Confidence 9999875
No 290
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.50 E-value=0.00037 Score=84.82 Aligned_cols=88 Identities=28% Similarity=0.341 Sum_probs=75.1
Q ss_pred cceEEEeccCccceeecCCCCCccceEEEEeecCC--------cceEEEEEecCc-ceEEECCeecCCCceEEeeCCCEE
Q 001244 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGG--------PSGALLEITGGK-GEVEVNGNVHPKDSQVVLRGGDEL 221 (1116)
Q Consensus 151 ~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g--------~~~a~Le~~~~~-G~v~vNg~~~~k~~~~~L~~GdEi 221 (1116)
...|+|||...||+.+-.|+||..||.|.+- +.| ....++.|.|+- || |+|..+|.+.+-+.++-|+.+
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~-~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~ 253 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQYK-ASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVA 253 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeecc-CCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHH
Confidence 4789999999999999999999999999865 222 234677777655 99 799999999999999999999
Q ss_pred EEccCCCeeEEeeecCcccC
Q 001244 222 VFSPSGKHSYIFQQLSDDTL 241 (1116)
Q Consensus 222 ~f~~~~~~ayifq~l~~~~~ 241 (1116)
-|+-+.+ .||||+...+..
T Consensus 254 ~fggsTr-l~i~Qgp~eD~E 272 (793)
T KOG1881|consen 254 RFGGSTR-LYIFQGPEEDEE 272 (793)
T ss_pred HhcCceE-EEEeeCCCcCCC
Confidence 9998887 899998776654
No 291
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.49 E-value=0.00058 Score=70.83 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=46.5
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc------cc-----------------------chH-----
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG-----------------------EGE----- 1029 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~------~G-----------------------esE----- 1029 (1116)
+|++||||||||+++..++.+. |.+++.++..+-...+ +| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887765 6677666653211000 00 000
Q ss_pred HHHHHHHHHHhcCCCeEEEEcccccccc
Q 001244 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1030 k~Ir~lF~~A~k~sPsIIfIDEID~Llg 1057 (1116)
..+..+...+....|.+|+||++..++.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134455555667899999999988753
No 292
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=7.9e-05 Score=83.83 Aligned_cols=68 Identities=32% Similarity=0.384 Sum_probs=56.2
Q ss_pred chhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccC
Q 001244 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1116)
Q Consensus 461 se~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l 530 (1116)
-|+.|.+|-=|+|-|-|.-.+...-.+.-=.--+|||-||.| .+++.||+.||+.++||+-+-|.|.|
T Consensus 66 Qe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTG--sGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 66 QEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTG--SGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred chhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCC--CcHHHHHHHHHHHhCCCeeeccccch
Confidence 489999999999999877544332233444456899999999 79999999999999999999999876
No 293
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.39 E-value=0.00068 Score=76.18 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=76.7
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccccc---c
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSIT---S 1022 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~---s 1022 (1116)
+.|+.-+++.+...+.-.+..+ ...+| --+=|+|++||||.++++.||+.+ .-+|+..=.+++- .
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------NPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------CCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 5677777777776665433322 21233 455589999999999999999987 3344432222110 0
Q ss_pred ccc-cchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1023 KWF-GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1023 k~~-GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
+++ ...++...++-..+...+.+|.++||+|.|- .-+-.++.-||..-......+..+.++|.-+|.-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAG 225 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcCCc
Confidence 011 1123444556666777888999999999882 1122223333332222222345677888877743
No 294
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.38 E-value=0.00023 Score=68.62 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.9
Q ss_pred EEEECCCCCchHHHHHHHHHHhC
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg 1009 (1116)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 295
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.002 Score=72.94 Aligned_cols=113 Identities=13% Similarity=0.077 Sum_probs=74.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeee--------EEecccccccc-ccc----hHHHHHHHHHHHhcC----CCe
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FGE----GEKYVKAVFSLASKI----APS 1045 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI--------~Is~seL~sk~-~Ge----sEk~Ir~lF~~A~k~----sPs 1045 (1116)
-+..+||+||.|+||+.+|.++|..+-+.-. .-.-+++.--. .|. ....++.+-..+... ...
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 3468999999999999999999998833100 00011110000 011 123455555555432 336
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1046 IIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
|++||++|.|- ....|.||..++.. +.++++|..|+.++.|-+.|++|..
T Consensus 98 v~ii~~ad~mt------------~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~SRcq 147 (290)
T PRK05917 98 IYIIHEADRMT------------LDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRSRSL 147 (290)
T ss_pred EEEEechhhcC------------HHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHhcce
Confidence 99999999882 34457777777763 4678889999999999999999764
No 296
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.36 E-value=0.00087 Score=73.66 Aligned_cols=64 Identities=23% Similarity=0.276 Sum_probs=50.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
.+-.++||.|||||.+++++|+.+|.+++.++|++.++ ...+.++|.-+... -+-+.+||+++|
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh
Confidence 36678999999999999999999999999999987544 35667777666553 479999999988
No 297
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.29 E-value=0.0014 Score=78.45 Aligned_cols=99 Identities=25% Similarity=0.400 Sum_probs=64.8
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc------cc--------chHHHHHHHHHHHhcCCC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAP 1044 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~------~G--------esEk~Ir~lF~~A~k~sP 1044 (1116)
.+..-+||+|+||+|||+|+..+|... +..+++++..+-.... +| ..+..+..++....+..|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 344678999999999999999998866 6788888765432211 11 112235567777777789
Q ss_pred eEEEEccccccccCCC--CCchhHHHHHHHHHHHHHhc
Q 001244 1045 SVVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNWD 1080 (1116)
Q Consensus 1045 sIIfIDEID~Llg~R~--~~~~~~~lr~IlneLL~~Ld 1080 (1116)
.+|+||+|..++.... ..+.....+.+++.|.....
T Consensus 158 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 158 DLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK 195 (446)
T ss_pred CEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998864321 12233345555555655543
No 298
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.29 E-value=0.0021 Score=70.73 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
..++|+||+|+|||++++.++..+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3588999999999999999999875
No 299
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.28 E-value=0.0032 Score=69.63 Aligned_cols=105 Identities=23% Similarity=0.363 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhcCChhhHHHHHHHHhcC----CCCEEEEeeccCCCcccccCCCCCceeeccC
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFG 765 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L----~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~ 765 (1116)
|..|++++.. +..+.|||+||+. +....+.|..||+.||.= |.||+|+++-|+-.-.+|. +.
T Consensus 94 l~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~----------~~ 159 (249)
T PF05673_consen 94 LPELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES----------FS 159 (249)
T ss_pred HHHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh----------hh
Confidence 4556666653 3579999999965 778899999999999865 5699999888865443333 00
Q ss_pred CcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHH
Q 001244 766 SNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSD 818 (1116)
Q Consensus 766 ~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRR 818 (1116)
-+.+ .. -..+|..+-.-.|+ .|..+|.-.|.|++|+.+.-|..
T Consensus 160 d~~~-~~-------~~eih~~d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~I 202 (249)
T PF05673_consen 160 DRED-IQ-------DDEIHPSDTIEEKL--SLSDRFGLWLSFYPPDQEEYLAI 202 (249)
T ss_pred hccC-CC-------ccccCcchHHHHHH--hHHHhCCcEEEecCCCHHHHHHH
Confidence 1100 00 01222222111222 47788999999999999988853
No 300
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.26 E-value=0.0015 Score=76.47 Aligned_cols=99 Identities=23% Similarity=0.400 Sum_probs=64.1
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc------ccc--------chHHHHHHHHHHHhcCCC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAP 1044 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk------~~G--------esEk~Ir~lF~~A~k~sP 1044 (1116)
.+..-+||+|+||+|||+|+..+|... +.++++++..+-... -+| ..+..+..+++.+....|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 344678999999999999999998776 457777765432111 011 122345667777777889
Q ss_pred eEEEEccccccccCCC--CCchhHHHHHHHHHHHHHhc
Q 001244 1045 SVVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNWD 1080 (1116)
Q Consensus 1045 sIIfIDEID~Llg~R~--~~~~~~~lr~IlneLL~~Ld 1080 (1116)
.+|+||+|..++.... ..+.....+.++..|.....
T Consensus 160 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 160 DLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred cEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998864331 12333445566665555443
No 301
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.26 E-value=0.0065 Score=70.09 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=24.7
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 490 TMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 490 ~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
..++.|+++||+| ++++++++++++++.
T Consensus 38 ~~~~~i~I~G~~G--tGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 38 SRPSNVFIYGKTG--TGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCcEEEECCCC--CCHHHHHHHHHHHHH
Confidence 3457899999999 999999999999874
No 302
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.22 E-value=0.0014 Score=80.38 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=81.2
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEecccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 1020 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is~seL 1020 (1116)
+.+-+.-...|...+...+.- ++ ....+.+.|-||||||.++..+-.++ .|.|++|++-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 445566667777666543321 01 12368899999999999999998866 588999987655
Q ss_pred ccc----------cccch------HHHHHHHHHHH-hcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC
Q 001244 1021 TSK----------WFGEG------EKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1116)
Q Consensus 1021 ~sk----------~~Ges------Ek~Ir~lF~~A-~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~ 1083 (1116)
.+. +.|+. -..+..-|... .+..++||+|||+|.|+.+. +.|+..|. .|-
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~---------QdVlYn~f-dWp--- 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS---------QDVLYNIF-DWP--- 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc---------HHHHHHHh-cCC---
Confidence 332 22221 12333344411 23467899999999997543 23443333 233
Q ss_pred cCCCCCEEEEEEeCCCCC
Q 001244 1084 TKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1084 ~k~~~kVLVIaTTNrp~~ 1101 (1116)
...+.+++|||..|.-+.
T Consensus 536 t~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDL 553 (767)
T ss_pred cCCCCceEEEEecccccC
Confidence 335789999999997554
No 303
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.0037 Score=65.00 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
...|+++|+||+|||+++.-||..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3679999999999999999999887
No 304
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.22 E-value=0.00066 Score=76.24 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=61.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC-Ce--eeEEeccccccccccchHHHHHHHHHHH-----------hcCCCeEEEEc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA-----------SKIAPSVVFVD 1050 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg-~p--fI~Is~seL~sk~~GesEk~Ir~lF~~A-----------~k~sPsIIfID 1050 (1116)
+.+||+||+|||||++++.+-..+. .. ...+.++... ....+..+.+.. ......|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999998887663 22 2334443221 111222211111 11133699999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHHhcCCCc------CCCCCEEEEEEeCCCC---CCcHHHHhhc
Q 001244 1051 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAATNRPF---DLDEAVVRRL 1110 (1116)
Q Consensus 1051 EID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~------k~~~kVLVIaTTNrp~---~LD~ALlRRF 1110 (1116)
|+..- ..+.-+.+. ..+++.+++..- |... +.=.++.+|||++... .|.+-++|.|
T Consensus 108 DlN~p--~~d~ygtq~-~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f 172 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQP-PIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF 172 (272)
T ss_dssp TTT-S-----TTS--H-HHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE
T ss_pred ccCCC--CCCCCCCcC-HHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe
Confidence 99743 222223333 235555555431 2111 1124688999988643 4677777766
No 305
>PF05729 NACHT: NACHT domain
Probab=97.21 E-value=0.0024 Score=64.21 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=42.7
Q ss_pred EEEEECCCCCchHHHHHHHHHHh------C--Ce-eeEEeccccccc------------cccchHHHHHH-HHHHHhcCC
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA------G--AN-FINISMSSITSK------------WFGEGEKYVKA-VFSLASKIA 1043 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el------g--~p-fI~Is~seL~sk------------~~GesEk~Ir~-lF~~A~k~s 1043 (1116)
-++|+|+||+|||++++.++..+ . +. ++.+.+.++... ........+.. +...+.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 48999999999999999999887 1 12 223333332111 00111111222 223334556
Q ss_pred CeEEEEcccccccc
Q 001244 1044 PSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1044 PsIIfIDEID~Llg 1057 (1116)
..+|+||.+|.+..
T Consensus 82 ~~llilDglDE~~~ 95 (166)
T PF05729_consen 82 RVLLILDGLDELEE 95 (166)
T ss_pred ceEEEEechHhccc
Confidence 68999999999964
No 306
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.19 E-value=0.00033 Score=67.73 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
|+|.|+||+|||++|+.||+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999999887765
No 307
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.17 E-value=0.00024 Score=85.34 Aligned_cols=171 Identities=24% Similarity=0.344 Sum_probs=93.0
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccc-cChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHH
Q 001244 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPL-QRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005 (1116)
Q Consensus 927 ~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl-~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA 1005 (1116)
...+..++...+-| .|.|++.+|.++.-++.--. +.+.. +.. .+.--+|||+|.|||||+-+.+.++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~~~--khk-vRGDinvLL~GDPGTaKSQFLKY~e 503 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNPGG--KHK-VRGDINVLLLGDPGTAKSQFLKYAE 503 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCCCC--Cce-eccceeEEEecCCCccHHHHHHHHH
Confidence 44455556666665 47899999988865443111 11110 001 1233589999999999999999999
Q ss_pred HHhCCeeeEEeccc----ccccccc---chHHHH-HHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHH
Q 001244 1006 TEAGANFINISMSS----ITSKWFG---EGEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1116)
Q Consensus 1006 ~elg~pfI~Is~se----L~sk~~G---esEk~I-r~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~ 1077 (1116)
+.....++..-... |...-.. ..|+.+ ...+-+|.+ +|-+|||+|.|-.... ..-|++|.. |..-.
T Consensus 504 K~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADk---GvClIDEFDKMndqDR-tSIHEAMEQ--QSISI 577 (854)
T KOG0477|consen 504 KTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADK---GVCLIDEFDKMNDQDR-TSIHEAMEQ--QSISI 577 (854)
T ss_pred hcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccC---ceEEeehhhhhccccc-chHHHHHHh--cchhh
Confidence 98855444322110 1000000 011111 112334444 7899999999942211 122333321 11111
Q ss_pred HhcCCCcCCCCCEEEEEEeCCC---C----------CCcHHHHhhcCCeEE
Q 001244 1078 NWDGLRTKDKERVLVLAATNRP---F----------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1078 ~Ldgl~~k~~~kVLVIaTTNrp---~----------~LD~ALlRRF~r~I~ 1115 (1116)
.--|+...-..+..||||+|.. . .|.+.|++||+-.+.
T Consensus 578 SKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcV 628 (854)
T KOG0477|consen 578 SKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCV 628 (854)
T ss_pred hhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeee
Confidence 1112222224678899999962 2 588899999986543
No 308
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.15 E-value=0.0024 Score=76.47 Aligned_cols=65 Identities=25% Similarity=0.379 Sum_probs=45.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..+.+++.-+..-+.+++.++.. -..+. .++ +.+-+||+||+|||||+.++.|++++|+.+++..
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~----~~~~~-~~l--~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQ----VAEFT-PKL--GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHH----HHHhc-cCC--CceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 45677776666555666555541 11111 111 2246889999999999999999999999999877
No 309
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.15 E-value=0.0018 Score=69.99 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=48.4
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccc----c-------------------chHHHHHHH
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF----G-------------------EGEKYVKAV 1035 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~----G-------------------esEk~Ir~l 1035 (1116)
.+..-++|+|+||+|||++|..+|.+. +..++.++...+....+ + +....+..+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKA 100 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHH
Confidence 344678999999999999999999765 77888888762211000 0 001112222
Q ss_pred HHHHhcCCCeEEEEcccccccc
Q 001244 1036 FSLASKIAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1036 F~~A~k~sPsIIfIDEID~Llg 1057 (1116)
..... ..+.+|+||.|..++.
T Consensus 101 ~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 101 EKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHH-hcccEEEEeCcHHHhH
Confidence 22222 5789999999998864
No 310
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.14 E-value=0.00021 Score=84.23 Aligned_cols=170 Identities=25% Similarity=0.339 Sum_probs=98.9
Q ss_pred cChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHc-cccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHH
Q 001244 925 VTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVML-PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 1003 (1116)
Q Consensus 925 v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~l-pl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArA 1003 (1116)
+...++-.++...+.| +|.|++++|+.|.-++.- +-+.+. .+--.+..-+|+|.|.||+-|+-|.++
T Consensus 327 ~~~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~~~~---dGMKIRGdINicLmGDPGVAKSQLLky 394 (721)
T KOG0482|consen 327 IAEGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDKSPG---DGMKIRGDINICLMGDPGVAKSQLLKY 394 (721)
T ss_pred hhcccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCCCCC---CCceeecceeEEecCCCchhHHHHHHH
Confidence 3344555555555555 588999999998654432 222221 122234456899999999999999999
Q ss_pred HHHHhCCeeeE---------EeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHH
Q 001244 1004 VATEAGANFIN---------ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1116)
Q Consensus 1004 IA~elg~pfI~---------Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~Ilne 1074 (1116)
|.+-.-...+. +.++-+.....|+.. .-...+-.|.. +|-.|||+|.|... +..++-+++.+
T Consensus 395 i~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~-LEGGALVLAD~---GICCIDEfDKM~e~-----DRtAIHEVMEQ 465 (721)
T KOG0482|consen 395 ISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMV-LEGGALVLADG---GICCIDEFDKMDES-----DRTAIHEVMEQ 465 (721)
T ss_pred HHhcCcccceecCCCCCccccchhhhcCCCCCeeE-eccceEEEccC---ceEeehhhhhhhhh-----hhHHHHHHHHh
Confidence 99877332222 111111111111110 00011223333 78889999999522 22233333332
Q ss_pred --HHHHhcCCCcCCCCCEEEEEEeCCCC-------------CCcHHHHhhcCCeEE
Q 001244 1075 --FMVNWDGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1075 --LL~~Ldgl~~k~~~kVLVIaTTNrp~-------------~LD~ALlRRF~r~I~ 1115 (1116)
.-..--|+.+.-+.+.-|+||+|..+ .|+.||++||+..+.
T Consensus 466 QTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~L 521 (721)
T KOG0482|consen 466 QTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWL 521 (721)
T ss_pred hhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhh
Confidence 22233466666688999999999654 499999999986543
No 311
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.14 E-value=0.00051 Score=79.72 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=64.4
Q ss_pred EecceEEEeccCccceeecCCCC--CccceEEEEeecCCcceEEEEEecCcceEEECCeecCCCce-EEeeCCCEEEEcc
Q 001244 149 MTGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSP 225 (1116)
Q Consensus 149 i~~~~~t~G~~~~cd~~l~d~~~--s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k~~~-~~L~~GdEi~f~~ 225 (1116)
......+|||+..||-.+.|+.- |.-||+|... +|. .+|=|+|+||+ +|||..+.-|.- +.|+.||||-++
T Consensus 23 f~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG- 96 (430)
T COG3456 23 FDRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG- 96 (430)
T ss_pred hhcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec-
Confidence 34567899999999999999865 9999999875 444 78999998888 799999999888 999999999774
Q ss_pred CCCeeEEee
Q 001244 226 SGKHSYIFQ 234 (1116)
Q Consensus 226 ~~~~ayifq 234 (1116)
-|||.
T Consensus 97 ----~y~i~ 101 (430)
T COG3456 97 ----RYIIR 101 (430)
T ss_pred ----cEEEE
Confidence 36766
No 312
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.14 E-value=0.0044 Score=72.33 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhh-cCChhhHHHHHHHHhcCCC-CEEEEeeccCCCcccccCCCCCceeeccCC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSL-TGNNDAYGALKSKLENLPS-NVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 766 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l-~~~~e~~~~lk~~Le~L~g-~VviIgS~~~~d~~~~~~~~~~~~~~~~~~ 766 (1116)
+++.+.+.+.+ +..++||+|||+|.+. ....+....|...++.+.+ +|.+|+..+..+.
T Consensus 125 ~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~----------------- 185 (394)
T PRK00411 125 LFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF----------------- 185 (394)
T ss_pred HHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch-----------------
Confidence 45555665543 2568999999999965 2233444444445665665 7777777763221
Q ss_pred cchhhccccCCCcccccccccCcchHHHhhhhccc-cccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhhhhc
Q 001244 767 NQTALLDLAFPDNFSRLHDRSKETPKALKQISRLF-PNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSR 845 (1116)
Q Consensus 767 ~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klF-pn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~l~~ 845 (1116)
...+| ..+...| +..|.+++++.+++...++..++..+. .
T Consensus 186 --~~~l~---------------------~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~----------------~ 226 (394)
T PRK00411 186 --LYILD---------------------PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFY----------------P 226 (394)
T ss_pred --hhhcC---------------------HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcc----------------c
Confidence 00011 1233333 567889999888887666655433211 0
Q ss_pred CCCCCCCchhhhccccccchh--hHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 846 NGLDCVDLESLCIKDQTLTTE--GVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 846 ~~lecvDLeeLai~dk~Lsga--dIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
..+...-++.++....+.+|. .+-.++..|...+.. .+...|+.+++..++..+
T Consensus 227 ~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~--------~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 227 GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER--------EGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--------cCCCCcCHHHHHHHHHHH
Confidence 012233344455444443332 234556666555444 223456777777766655
No 313
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.11 E-value=0.00054 Score=80.75 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=39.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
.++++.||+|||||+||.+|+.+. | -.++.+.|+... .. +.+... ....+|+|||+..+.
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~v--~~~DlLI~DEvgylp 273 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGLV--GRWDVVAFDEVATLK 273 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhhh--ccCCEEEEEcCCCCc
Confidence 589999999999999999998872 4 233334433221 11 111111 234899999999863
No 314
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.11 E-value=0.0006 Score=72.45 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=54.9
Q ss_pred EEEECCCCCchHHHHHHH-HHHh---CCeeeEEeccccccccc----cchHH-------------HHHHHHHHHhcCCCe
Q 001244 987 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWF----GEGEK-------------YVKAVFSLASKIAPS 1045 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAI-A~el---g~pfI~Is~seL~sk~~----GesEk-------------~Ir~lF~~A~k~sPs 1045 (1116)
.|++|.||+|||+.|... .... |.+++. +...|.-..+ +.... .......-..--..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4433 555554 4332211111 10000 001111111111458
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcCCeE
Q 001244 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1046 IIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~r~I 1114 (1116)
+|+|||+..+++.|.... .....++ ++ +... ....+-||.+|..+..||..+++.....+
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~---l~~h---Rh~g~diiliTQ~~~~id~~ir~lve~~~ 141 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EF---LAQH---RHYGWDIILITQSPSQIDKFIRDLVEYHY 141 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HG---GGGC---CCTT-EEEEEES-GGGB-HHHHCCEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HH---HHHh---CcCCcEEEEEeCCHHHHhHHHHHHHheEE
Confidence 999999999998776511 0112233 22 2222 34568899999999999999987655444
No 315
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.11 E-value=0.0041 Score=68.15 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=48.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc---------c--------------------cc--ch
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---------W--------------------FG--EG 1028 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk---------~--------------------~G--es 1028 (1116)
+..-++|.|+||||||++|..++... |...++++..+-... | .+ +.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34679999999999999986665544 666666654321000 0 00 11
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccccccc
Q 001244 1029 EKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1029 Ek~Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
+..+..+...+....|.+++|||+-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3345556666666678999999998775
No 316
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0045 Score=74.76 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=51.4
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCccccc
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 783 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~ 783 (1116)
..-||||||+|. |. .+..+.|...|+..++.+++|++++++.. +
T Consensus 117 ~~kVvIIDE~h~-Lt--~~a~~~LLk~LE~p~~~vv~Ilattn~~k----------------------l----------- 160 (472)
T PRK14962 117 KYKVYIIDEVHM-LT--KEAFNALLKTLEEPPSHVVFVLATTNLEK----------------------V----------- 160 (472)
T ss_pred CeEEEEEEChHH-hH--HHHHHHHHHHHHhCCCcEEEEEEeCChHh----------------------h-----------
Confidence 456999999999 43 34567788899988899999988874221 1
Q ss_pred ccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHH
Q 001244 784 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1116)
Q Consensus 784 ~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~ql 823 (1116)
...|.+++ ..+++.++.++++..+++..+
T Consensus 161 ----------~~~L~SR~-~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 161 ----------PPTIISRC-QVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred ----------hHHHhcCc-EEEEECCccHHHHHHHHHHHH
Confidence 22355555 368888888888766555444
No 317
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.10 E-value=0.00097 Score=79.84 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=94.5
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee---------eEEecccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 1020 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf---------I~Is~seL 1020 (1116)
.|.|.+.+|++|.-++.- .....+.++.-.+..-+|||.|.|-+-|+-|.|++.+.....+ +-+.++--
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 478999999998755431 1222233343345556999999999999999999998763211 11211111
Q ss_pred ccccccchHHHHH-HHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHH--hcCCCcCCCCCEEEEEEeC
Q 001244 1021 TSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTKDKERVLVLAATN 1097 (1116)
Q Consensus 1021 ~sk~~GesEk~Ir-~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~--Ldgl~~k~~~kVLVIaTTN 1097 (1116)
..+ ...|+.+. ...-+|.+ +|+.|||+|.|. ..+..++-+++.+-... --|+...-+.+.-||||+|
T Consensus 380 tD~--eTGERRLEAGAMVLADR---GVVCIDEFDKMs-----DiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLADR---GVVCIDEFDKMS-----DIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred ecc--ccchhhhhcCceEEccC---ceEEehhccccc-----chhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111 12334332 23334444 899999999983 22333333333332222 2355556678999999999
Q ss_pred CCC-------------CCcHHHHhhcCCeEE
Q 001244 1098 RPF-------------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1098 rp~-------------~LD~ALlRRF~r~I~ 1115 (1116)
..+ .|++.|++||+..+.
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv 480 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFV 480 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEE
Confidence 664 389999999987654
No 318
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0035 Score=79.75 Aligned_cols=120 Identities=23% Similarity=0.317 Sum_probs=84.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEecccccc--ccccchHHHHHHHHHHHhcC-CCeEEEEcc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDE 1051 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is~seL~s--k~~GesEk~Ir~lF~~A~k~-sPsIIfIDE 1051 (1116)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++-|+.+..++.+..++... ..-||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 578999999999999999999876 34567777765543 45678889999999988843 456899999
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC-----CCCcHHHHhhcCCeE
Q 001244 1052 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----FDLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1052 ID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp-----~~LD~ALlRRF~r~I 1114 (1116)
++-+.+...+.+ .-...+-|.-.+ .+..+.+||||..- -.=||++-|||..+.
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~ 346 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQLVL 346 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcceeE
Confidence 999987665522 112222222221 12349999987622 246889999997543
No 319
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.0012 Score=68.84 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
+.|+++||||+|||+||+.|++.++++++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998874
No 320
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.08 E-value=0.0072 Score=72.28 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=46.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc---------------ccccc-----hHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---------------KWFGE-----GEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s---------------k~~Ge-----sEk~Ir~lF~~A 1039 (1116)
++..++|+|++|+|||+++..+|..+ |..+.-+++..+.. .+++. ....++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999999999877 56666666543311 01111 122344455555
Q ss_pred hcCCCeEEEEcccccc
Q 001244 1040 SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~L 1055 (1116)
... .+|+||...++
T Consensus 174 ~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 174 KKA--DVIIVDTAGRH 187 (437)
T ss_pred hcC--CEEEEECCCcc
Confidence 443 79999999765
No 321
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.08 E-value=0.0014 Score=78.46 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=51.0
Q ss_pred CCeEEEEcchhhhhcC----ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCc
Q 001244 704 SPLIVFVKDIEKSLTG----NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~----~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~ 779 (1116)
.+-+|+|||++. +.+ +.++++.|....+ .+..+||+|+..+. +
T Consensus 211 ~~dlLiiDDi~~-l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~------------------------------~ 257 (450)
T PRK00149 211 SVDVLLIDDIQF-LAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPK------------------------------E 257 (450)
T ss_pred cCCEEEEehhhh-hcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHH------------------------------H
Confidence 456999999998 554 3466666655555 35557777766321 1
Q ss_pred ccccccccCcchHHHhhhhccccc--cccccCCchHHHHHHHHHHHh
Q 001244 780 FSRLHDRSKETPKALKQISRLFPN--KVTIQLPQDEALLSDWKQQLE 824 (1116)
Q Consensus 780 ~~~~~~~~~~~~k~~~~i~klFpn--~I~I~~P~DEa~LRRfe~qle 824 (1116)
+. ...+.+.++|.+ .++|++|+++.+...++..++
T Consensus 258 l~----------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 258 LP----------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred HH----------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 11 123457788864 789999999999876665443
No 322
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.07 E-value=0.0046 Score=68.97 Aligned_cols=135 Identities=19% Similarity=0.346 Sum_probs=85.6
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-C--CeeeEEecccc--
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSSI-- 1020 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-g--~pfI~Is~seL-- 1020 (1116)
.+++.+.+.++....|..+.. ..-..++|+|||+|+||-+.+.++.+++ | +.=.++...++
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 456667777777777765543 1112489999999999999999999988 3 32222222111
Q ss_pred -----------cccc--------ccch-HHHHHHHHHHHhcCCC---------eEEEEccccccccCCCCCchhHHHHHH
Q 001244 1021 -----------TSKW--------FGEG-EKYVKAVFSLASKIAP---------SVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1116)
Q Consensus 1021 -----------~sk~--------~Ges-Ek~Ir~lF~~A~k~sP---------sIIfIDEID~Llg~R~~~~~~~~lr~I 1071 (1116)
.+.| .|.- +-.+..+.....+.+| .+++|-|+|.|. -..|.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----RDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----HHHHHHHHHH
Confidence 1111 1222 2234555555544333 499999999993 2345566666
Q ss_pred HHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1072 lneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
+... ...+.+|..+|....+-++|++|.
T Consensus 151 MEkY-----------s~~~RlIl~cns~SriIepIrSRC 178 (351)
T KOG2035|consen 151 MEKY-----------SSNCRLILVCNSTSRIIEPIRSRC 178 (351)
T ss_pred HHHH-----------hcCceEEEEecCcccchhHHhhhe
Confidence 5544 245778888898888999998864
No 323
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.06 E-value=0.0026 Score=73.12 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=52.9
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc----------------ccccchHHHHHHHHHHHhcC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKI 1042 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s----------------k~~GesEk~Ir~lF~~A~k~ 1042 (1116)
.+..-++|+||||+|||+||..++.+. |..++.|+...... ......++.+..+....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 344678899999999999988877655 67777776643211 01112344455555555667
Q ss_pred CCeEEEEccccccccC
Q 001244 1043 APSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 1043 sPsIIfIDEID~Llg~ 1058 (1116)
.+.+||||-|..|.+.
T Consensus 133 ~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 133 AVDIIVVDSVAALVPK 148 (321)
T ss_pred CCcEEEEcchhhhccc
Confidence 7899999999998753
No 324
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.05 E-value=0.0024 Score=63.99 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=41.9
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEE
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINI 1015 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~I 1015 (1116)
.+.|+.-+.+.+..++...+..+ ...+| .-+-|+|++|||||++++.||+.+ +-+|+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~Kp-LVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~ 89 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKP-LVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQ 89 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCC-EEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceee
Confidence 46788888888888876544322 21233 455699999999999999999996 4455543
No 325
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.0014 Score=68.53 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=30.7
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL 1020 (1116)
.|+|.|+||+|||+||+.|+..++.+++.++.-..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999999999999888765433
No 326
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.00 E-value=0.0038 Score=71.87 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=52.1
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc----------------ccccchHHHHHHHHHHHhcC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKI 1042 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s----------------k~~GesEk~Ir~lF~~A~k~ 1042 (1116)
.+.+-++++||||+|||+||-.++.+. |...+.++...-.. ......++.+..+-..++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~ 132 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSG 132 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhcc
Confidence 344568899999999999999887554 67777777643111 01112344444444455666
Q ss_pred CCeEEEEccccccccC
Q 001244 1043 APSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 1043 sPsIIfIDEID~Llg~ 1058 (1116)
.+.+|+||-|-.|.+.
T Consensus 133 ~~~lIVIDSvaal~~~ 148 (325)
T cd00983 133 AVDLIVVDSVAALVPK 148 (325)
T ss_pred CCCEEEEcchHhhccc
Confidence 7899999999999753
No 327
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.00 E-value=0.0008 Score=79.54 Aligned_cols=159 Identities=26% Similarity=0.327 Sum_probs=91.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe----ccccccccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 1025 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is----~seL~sk~~ 1025 (1116)
.|.|.+++|+++.-++. -.....+-.+-..+..-+|||.|.|||.|+-|.+-+-+-+-+-++.-- ++.|.....
T Consensus 332 SIfG~~DiKkAiaClLF--gGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLF--GGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhh--cCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 47899999999876543 112221212222334468999999999999999998877654444311 111111100
Q ss_pred cch---HHHH-HHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC-
Q 001244 1026 GEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF- 1100 (1116)
Q Consensus 1026 Ges---Ek~I-r~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~- 1100 (1116)
..+ +-++ ....-+|.. +|+.|||+|.|-.. ..-.-|++|.. |+.-..--|+.+.-+.+.-|+||+|..+
T Consensus 410 RD~~tReFylEGGAMVLADg---GVvCIDEFDKMre~-DRVAIHEAMEQ--QTISIAKAGITT~LNSRtSVLAAANpvfG 483 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLADG---GVVCIDEFDKMRED-DRVAIHEAMEQ--QTISIAKAGITTTLNSRTSVLAAANPVFG 483 (729)
T ss_pred ecCCcceEEEecceEEEecC---CEEEeehhhccCch-hhhHHHHHHHh--hhHHHhhhcceeeecchhhhhhhcCCccc
Confidence 000 0000 011123333 79999999998211 11122333321 3333444566666788999999999663
Q ss_pred ------------CCcHHHHhhcCCeEEC
Q 001244 1101 ------------DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1101 ------------~LD~ALlRRF~r~I~V 1116 (1116)
++-+.|++||+..+.|
T Consensus 484 RyDd~Kt~~dNIDf~~TILSRFDmIFIV 511 (729)
T KOG0481|consen 484 RYDDTKTGEDNIDFMPTILSRFDMIFIV 511 (729)
T ss_pred cccccCCcccccchhhhHhhhccEEEEE
Confidence 3558999999977643
No 328
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.004 Score=69.49 Aligned_cols=114 Identities=7% Similarity=0.039 Sum_probs=73.9
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHhCCee--------------eEEeccccccccc-c--chHHHHHHHHHHHhc---
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF--------------INISMSSITSKWF-G--EGEKYVKAVFSLASK--- 1041 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~elg~pf--------------I~Is~seL~sk~~-G--esEk~Ir~lF~~A~k--- 1041 (1116)
.++..+||+||.|+||..+|.++|..+-+.- -.-.-+++.--+. + -....++++-.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3557899999999999999999998872210 0000111110000 0 012233443333221
Q ss_pred --CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1042 --IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1042 --~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
....|++|+++|.|- ....|.||..++.- +.++++|.+|+.++.|-+.|++|..
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEEP----p~~t~fiLit~~~~~lLpTI~SRCq 140 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEEP----PKNTYGIFTTRNENNILNTILSRCV 140 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcCC----CCCeEEEEEECChHhCchHhhhhee
Confidence 134699999999882 35567888887763 4678999999999999999999864
No 329
>PHA02624 large T antigen; Provisional
Probab=96.98 E-value=0.0036 Score=76.62 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=65.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCC-CC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE-NP 1062 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~-~~ 1062 (1116)
.+.+||+||||||||+++.+|++.++...+.++++.-.+. |.+.--..-.+++||++-.-..... -+
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp 498 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLP 498 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCC
Confidence 3689999999999999999999999777777886653221 2221112225788888742211000 00
Q ss_pred chhHHHHHHHHHHHHHhcCCCc-----CCCCC-----EEEEEEeCCCCCCcHHHHhhcCCeEE
Q 001244 1063 GEHEAMRKMKNEFMVNWDGLRT-----KDKER-----VLVLAATNRPFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1063 ~~~~~lr~IlneLL~~Ldgl~~-----k~~~k-----VLVIaTTNrp~~LD~ALlRRF~r~I~ 1115 (1116)
..+. +.. +..|...|||-.+ +-..+ --+|.|||. ..|+..+.-||.+.+.
T Consensus 499 ~G~~-~dN-l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~ 558 (647)
T PHA02624 499 SGQG-MNN-LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLD 558 (647)
T ss_pred cccc-cch-hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhcc
Confidence 0000 000 1234455566411 00011 125667775 5678888889987764
No 330
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.97 E-value=0.0013 Score=68.97 Aligned_cols=23 Identities=52% Similarity=0.808 Sum_probs=20.5
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+|+|+|+||+|||+|++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999888
No 331
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.94 E-value=0.0078 Score=67.90 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=27.8
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
..+.+||+||+| +++++||+++|++++.++..+
T Consensus 29 ~~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~ 61 (305)
T TIGR00635 29 ALDHLLLYGPPG--LGKTTLAHIIANEMGVNLKIT 61 (305)
T ss_pred CCCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEe
Confidence 346699999999 999999999999988665443
No 332
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.93 E-value=0.00086 Score=68.50 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=29.9
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
...|+|+|+||+|||++|++||+.++++|+..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999999888654
No 333
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.92 E-value=0.0094 Score=66.77 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=61.6
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEe-ccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSIT 1021 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is-~seL~ 1021 (1116)
.+++++|-..+..+.+.+++.. +...+|+.||+|+|||++++++..... ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4577888777777777666531 123589999999999999999987773 3445442 12221
Q ss_pred cc-----ccc-chHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 1022 SK-----WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 1022 sk-----~~G-esEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10 111 112245667777788999999999995
No 334
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0018 Score=76.22 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=63.5
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh-------CCeeeEEeccccc----------cc------cccchHHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSIT----------SK------WFGEGEKYVKAVFSLAS 1040 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el-------g~pfI~Is~seL~----------sk------~~GesEk~Ir~lF~~A~ 1040 (1116)
+..++|+||+|+|||+++..+|..+ +..+.-+++..+. .. ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3679999999999999999998765 2333333333211 00 0111222333333333
Q ss_pred cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1041 k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
....+|+||.+.++. .+... +.++...++.... ....+||+.+|....++... +++|
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~-~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEI-FHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHH-HHHh
Confidence 345799999998762 11111 2333333333322 23568899998887777744 3444
No 335
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.0052 Score=67.06 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=47.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh--C------CeeeEEecc-ccccccccc-------------hHHHHHHHHHHHhcC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGE-------------GEKYVKAVFSLASKI 1042 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el--g------~pfI~Is~s-eL~sk~~Ge-------------sEk~Ir~lF~~A~k~ 1042 (1116)
.+.||.||||||||+|.+-||..+ | ..+.-++-. ++.....|- .+-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 479999999999999999999877 2 223334432 222211111 122334466677889
Q ss_pred CCeEEEEcccccc
Q 001244 1043 APSVVFVDEVDSM 1055 (1116)
Q Consensus 1043 sPsIIfIDEID~L 1055 (1116)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 336
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0041 Score=73.55 Aligned_cols=137 Identities=21% Similarity=0.289 Sum_probs=85.9
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEecccccc-
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS- 1022 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~s- 1022 (1116)
..+.|-+..+..+++++...+. .+....+.+.|-||||||.+..-+...+ +...++++|-+|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEA 219 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccch
Confidence 3567778888888887765432 2234679999999999999888777655 34557888876421
Q ss_pred -----c----c----cc-chHHHHHHHHHHH-hcC-CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCC
Q 001244 1023 -----K----W----FG-EGEKYVKAVFSLA-SKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1086 (1116)
Q Consensus 1023 -----k----~----~G-esEk~Ir~lF~~A-~k~-sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~ 1086 (1116)
+ + .+ ..+......|+.= ... .+-+|++||+|.|+.+. . .++. -+.+|..++
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-~--------~vLy-~lFewp~lp--- 286 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-Q--------TVLY-TLFEWPKLP--- 286 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-c--------ceee-eehhcccCC---
Confidence 1 1 11 1122223333322 222 36799999999997322 2 2222 234566654
Q ss_pred CCCEEEEEEeCCCCCCcHHHHh
Q 001244 1087 KERVLVLAATNRPFDLDEAVVR 1108 (1116)
Q Consensus 1087 ~~kVLVIaTTNrp~~LD~ALlR 1108 (1116)
+.++++||.+|..+.-|..|.|
T Consensus 287 ~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhh
Confidence 5789999999987766655554
No 337
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=96.86 E-value=0.0014 Score=73.26 Aligned_cols=71 Identities=30% Similarity=0.364 Sum_probs=51.3
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh--CCeeeEEecccccccccc
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSKWFG 1026 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el--g~pfI~Is~seL~sk~~G 1026 (1116)
.-++|+.+++++.--.+.+. + .. .-..+.+||.||||||||.||-+|++++ +.||..+..++..+.-+.
T Consensus 38 ~g~vGQ~~AReAagiivdli-k------~K--kmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvK 108 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLI-K------SK--KMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVK 108 (456)
T ss_pred cccccchhhhhhhhHHHHHH-H------hh--hccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhh
Confidence 45788888887755444421 1 11 1123689999999999999999999999 679988888887765444
Q ss_pred ch
Q 001244 1027 EG 1028 (1116)
Q Consensus 1027 es 1028 (1116)
.+
T Consensus 109 KT 110 (456)
T KOG1942|consen 109 KT 110 (456)
T ss_pred HH
Confidence 43
No 338
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.86 E-value=0.0015 Score=79.52 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.6
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-CCeeeEEec
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is~ 1017 (1116)
-|+|+.|++++++.+.+++..... ++....+-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 478899999999999887743221 112233578899999999999999999988 566666644
No 339
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.85 E-value=0.0042 Score=70.95 Aligned_cols=144 Identities=22% Similarity=0.376 Sum_probs=81.2
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHH---HHhCCeeeEEeccccc-----
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA---TEAGANFINISMSSIT----- 1021 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA---~elg~pfI~Is~seL~----- 1021 (1116)
.+.|..+..+.+.+.+..... ..-...+++.||.|+|||+|..... ++.|-+|+.+......
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 356777777777776653221 1123579999999999999654433 3556666665443211
Q ss_pred ----------------cccccchHHHHHHHHHHHhc---CC-CeEEE-EccccccccCCCCCchhHHHHHHHHHHHHHhc
Q 001244 1022 ----------------SKWFGEGEKYVKAVFSLASK---IA-PSVVF-VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1116)
Q Consensus 1022 ----------------sk~~GesEk~Ir~lF~~A~k---~s-PsIIf-IDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld 1080 (1116)
.+.+|....++..+.+..++ +. -.||| +||||-..+.. + |+++..+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------r---QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------R---QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------h---hHHHHHHH
Confidence 11222222333334333322 11 12555 47999775321 1 23333332
Q ss_pred CCCcCCCCCEEEEEEeCCCCC---CcHHHHhhcCCe-EE
Q 001244 1081 GLRTKDKERVLVLAATNRPFD---LDEAVVRRLPRR-TC 1115 (1116)
Q Consensus 1081 gl~~k~~~kVLVIaTTNrp~~---LD~ALlRRF~r~-I~ 1115 (1116)
........++.|||-|.+-+. |..-+.+||.++ |+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~ 201 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIF 201 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceee
Confidence 223334678999999988775 455667799987 54
No 340
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0052 Score=71.99 Aligned_cols=109 Identities=22% Similarity=0.300 Sum_probs=61.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh----C-CeeeEEeccccc----------cccccc------hHHHHHHHHHHHhcCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSIT----------SKWFGE------GEKYVKAVFSLASKIA 1043 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el----g-~pfI~Is~seL~----------sk~~Ge------sEk~Ir~lF~~A~k~s 1043 (1116)
..++|.||+|+|||+++..||..+ | ..+..+....+. ..+.|- ....+...+.. -..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~--l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE--LRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--hcC
Confidence 578999999999999999999764 3 233334433321 001110 11112222222 234
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHH
Q 001244 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV 1107 (1116)
Q Consensus 1044 PsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALl 1107 (1116)
..+|+||.....- . ...+.+.+..+..... ....++||.+|+..+.+++.+.
T Consensus 216 ~DlVLIDTaG~~~------~-----d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 216 KHMVLIDTIGMSQ------R-----DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CCEEEEcCCCCCc------c-----cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHHH
Confidence 5899999997431 1 1223333444433322 2356889999998888776543
No 341
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.82 E-value=0.0023 Score=68.42 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=50.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc----cccchHHHHHHHHHHHh---------cCCCeEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFGEGEKYVKAVFSLAS---------KIAPSVVF 1048 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk----~~GesEk~Ir~lF~~A~---------k~sPsIIf 1048 (1116)
+-++|.|+||||||++++.++..+ +..++-+....-... ..|.....+..++.... .....+||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 358889999999999999988766 666666654321000 00100111222211111 12347999
Q ss_pred EccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC
Q 001244 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1116)
Q Consensus 1049 IDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr 1098 (1116)
|||+..+- ...+..++..... .+.+++++|=.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99998662 2334444444333 2467888886653
No 342
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.80 E-value=0.0072 Score=64.90 Aligned_cols=73 Identities=26% Similarity=0.403 Sum_probs=46.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc----------------ccc--c-----chHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWF--G-----EGEKYVKAVF 1036 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s----------------k~~--G-----esEk~Ir~lF 1036 (1116)
+..-++|+|+||+|||++|..+|.+. +.+++.++...... .++ . +....+..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETE 97 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHHHH
Confidence 34668999999999999999999776 66777776542111 000 0 0011223333
Q ss_pred HHHhcCCCeEEEEccccccc
Q 001244 1037 SLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1037 ~~A~k~sPsIIfIDEID~Ll 1056 (1116)
.... ..+.+|+||-|-.++
T Consensus 98 ~~~~-~~~~lvvIDsi~~l~ 116 (218)
T cd01394 98 TFAD-EKVDLVVVDSATALY 116 (218)
T ss_pred HHHh-cCCcEEEEechHHhh
Confidence 3333 237899999999885
No 343
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.79 E-value=0.0075 Score=66.88 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..+-|.|+|++|+|||+||+.+++.
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CeEEEEEEcCCcCCcceeeeecccc
Confidence 4467999999999999999999988
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.78 E-value=0.011 Score=70.29 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=27.3
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
+.|||+||+| +++++||++||+.++.+++.++
T Consensus 37 ~~ilL~GppG--tGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 37 SSMILWGPPG--TGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEe
Confidence 4799999999 8999999999998876665554
No 345
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0018 Score=75.63 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=33.7
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccC
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l 530 (1116)
-+|||-||.| -+++.||+-||+-++||+-|-|.+.|
T Consensus 227 SNvLllGPtG--sGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 227 SNVLLLGPTG--SGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred ccEEEECCCC--CchhHHHHHHHHHhCCCeEEecccch
Confidence 4799999999 79999999999999999999998776
No 346
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.77 E-value=0.0023 Score=71.36 Aligned_cols=68 Identities=29% Similarity=0.565 Sum_probs=48.0
Q ss_pred eEEEEECCCCCchHHHHHHHHH------HhCCeeeEEeccccccc-----cccchHHHHHHHHHHHh--------cCCCe
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT------EAGANFINISMSSITSK-----WFGEGEKYVKAVFSLAS--------KIAPS 1045 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~------elg~pfI~Is~seL~sk-----~~GesEk~Ir~lF~~A~--------k~sPs 1045 (1116)
..+||.||.|.||+.||+-|.. ++..+|++++|.++.+. .+| .++..|.-|+ ...-+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCc
Confidence 3599999999999999998863 45789999999998554 222 1222222221 12237
Q ss_pred EEEEccccccc
Q 001244 1046 VVFVDEVDSML 1056 (1116)
Q Consensus 1046 IIfIDEID~Ll 1056 (1116)
++|+|||..|.
T Consensus 285 mlfldeigelg 295 (531)
T COG4650 285 MLFLDEIGELG 295 (531)
T ss_pred eEehHhhhhcC
Confidence 99999999883
No 347
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.77 E-value=0.0015 Score=79.09 Aligned_cols=170 Identities=20% Similarity=0.250 Sum_probs=95.3
Q ss_pred cChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHH-ccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHH
Q 001244 925 VTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVM-LPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 1003 (1116)
Q Consensus 925 v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~-lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArA 1003 (1116)
.........+...+.| .|.|.+.+|.-|.-.+. -..++.. .+--.+..-+|+|.|.|||||+-+.++
T Consensus 330 ~~~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~a~---eg~~lRGDinv~iVGDPgt~KSQfLk~ 397 (764)
T KOG0480|consen 330 SKDENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKSAG---EGTSLRGDINVCIVGDPGTGKSQFLKA 397 (764)
T ss_pred hcCchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccccCC---CCccccCCceEEEeCCCCccHHHHHHH
Confidence 3344555666666655 58899999988753332 1112111 111133445899999999999999999
Q ss_pred HHHHhCCeeeEE----eccccccccccchH---HHH-HHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHH
Q 001244 1004 VATEAGANFINI----SMSSITSKWFGEGE---KYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1116)
Q Consensus 1004 IA~elg~pfI~I----s~seL~sk~~GesE---k~I-r~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneL 1075 (1116)
++.-+-..++.- +.+.|....+...+ -.+ ...+-.|.+ +|=.|||+|.|- ..+|.++-+.+.+-
T Consensus 398 v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADn---GICCIDEFDKMd-----~~dqvAihEAMEQQ 469 (764)
T KOG0480|consen 398 VCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADN---GICCIDEFDKMD-----VKDQVAIHEAMEQQ 469 (764)
T ss_pred HhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccC---ceEEechhcccC-----hHhHHHHHHHHHhh
Confidence 998773333221 11112111111111 011 112223333 788999999982 22344333332222
Q ss_pred HHH--hcCCCcCCCCCEEEEEEeCCCC-------------CCcHHHHhhcCCeE
Q 001244 1076 MVN--WDGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1076 L~~--Ldgl~~k~~~kVLVIaTTNrp~-------------~LD~ALlRRF~r~I 1114 (1116)
... --|+...-+.+.-||||+|... .|..+|++||+..+
T Consensus 470 tISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~F 523 (764)
T KOG0480|consen 470 TISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFF 523 (764)
T ss_pred eehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEE
Confidence 222 2334334467888999999653 48899999998655
No 348
>PRK04296 thymidine kinase; Provisional
Probab=96.76 E-value=0.015 Score=61.74 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=40.7
Q ss_pred EEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc----c----cccccccch-----HHHHHHHHHHH--hcCCCeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISMS----S----ITSKWFGEG-----EKYVKAVFSLA--SKIAPSVV 1047 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s----e----L~sk~~Ges-----Ek~Ir~lF~~A--~k~sPsII 1047 (1116)
-+|++||+|+|||+++..++..+ +..++.+... . +.+. .|-. ......++..+ ......+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999998888776 5555545321 1 1111 1110 01123333333 23456899
Q ss_pred EEcccccc
Q 001244 1048 FVDEVDSM 1055 (1116)
Q Consensus 1048 fIDEID~L 1055 (1116)
+|||+..+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999654
No 349
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.76 E-value=0.0063 Score=75.08 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCeEEEEcchhhhhcC----ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCc
Q 001244 704 SPLIVFVKDIEKSLTG----NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~----~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~ 779 (1116)
++-+|+||||+. +.+ +.++++.|-...+ .+.-|||.|+..+ .+
T Consensus 377 ~~DLLlIDDIq~-l~gke~tqeeLF~l~N~l~e--~gk~IIITSd~~P------------------------------~e 423 (617)
T PRK14086 377 EMDILLVDDIQF-LEDKESTQEEFFHTFNTLHN--ANKQIVLSSDRPP------------------------------KQ 423 (617)
T ss_pred cCCEEEEehhcc-ccCCHHHHHHHHHHHHHHHh--cCCCEEEecCCCh------------------------------Hh
Confidence 356999999998 553 3567776666655 3455566666522 22
Q ss_pred ccccccccCcchHHHhhhhcccccc--ccccCCchHHHHHHHHHHHh
Q 001244 780 FSRLHDRSKETPKALKQISRLFPNK--VTIQLPQDEALLSDWKQQLE 824 (1116)
Q Consensus 780 ~~~~~~~~~~~~k~~~~i~klFpn~--I~I~~P~DEa~LRRfe~qle 824 (1116)
+..+ .+.|.++|.+. +.|++|++|.++..+.+...
T Consensus 424 L~~l----------~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 424 LVTL----------EDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred hhhc----------cHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 2211 23577888654 48999999999876664443
No 350
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.75 E-value=0.026 Score=65.40 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.9
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
+.+||.||+| +.++|||||||+-+-
T Consensus 30 ~~vLl~G~pG--~gKT~lar~la~llP 54 (334)
T PRK13407 30 GGVLVFGDRG--TGKSTAVRALAALLP 54 (334)
T ss_pred CcEEEEcCCC--CCHHHHHHHHHHHCC
Confidence 5699999999 999999999999864
No 351
>PRK14974 cell division protein FtsY; Provisional
Probab=96.74 E-value=0.0093 Score=69.11 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=44.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc----c------cc----------chHHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----W------FG----------EGEKYVKAVFSLAS 1040 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk----~------~G----------esEk~Ir~lF~~A~ 1040 (1116)
+.-++|.|++|+|||+++..+|..+ |..+..+.+..+... + .| .....+....+.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999998876 555555554322110 0 00 11122233444444
Q ss_pred cCCCeEEEEcccccc
Q 001244 1041 KIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1041 k~sPsIIfIDEID~L 1055 (1116)
.....+|+||...++
T Consensus 220 ~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 ARGIDVVLIDTAGRM 234 (336)
T ss_pred hCCCCEEEEECCCcc
Confidence 444579999999866
No 352
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.71 E-value=0.0039 Score=64.15 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=36.0
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe---eeEEecccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 1020 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p---fI~Is~seL 1020 (1116)
+.|-++..+++...+. .. . ...+..++|+|++|+|||+|+++++..+... ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~-~~-------~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA-------Q---SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT-------S---S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH-------H---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4677777777776653 11 1 2234689999999999999999998887322 777776554
No 353
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.71 E-value=0.0032 Score=67.26 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=44.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCC----eeeEEecc-cccc---------ccccchHHHHHHHHHHHhcCCCeEEEEcc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~----pfI~Is~s-eL~s---------k~~GesEk~Ir~lF~~A~k~sPsIIfIDE 1051 (1116)
-+++.||+|+|||+++++++..+.. .++.+.-+ ++.. ..+|.....+.+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4889999999999999999988742 23332211 1110 01122223355566677777899999999
Q ss_pred cc
Q 001244 1052 VD 1053 (1116)
Q Consensus 1052 ID 1053 (1116)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 354
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.015 Score=66.03 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=71.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeee-------------EE---ecccccccc-ccc--hHHHHHHHHHHHhcC-
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFI-------------NI---SMSSITSKW-FGE--GEKYVKAVFSLASKI- 1042 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI-------------~I---s~seL~sk~-~Ge--sEk~Ir~lF~~A~k~- 1042 (1116)
-+..+||+|| +||+.+|+++|..+-+.-. .+ +-+++.--. .|. .-..|+.+...+...
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 3468999996 6899999999988722100 00 011111000 011 123455555555432
Q ss_pred ---CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1043 ---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1043 ---sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
...|++||++|.|- ....|.||..++.- +.++++|.+|+.++.|-|.|++|..
T Consensus 101 ~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~SRcq 156 (290)
T PRK07276 101 YEGKQQVFIIKDADKMH------------VNAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKSRTQ 156 (290)
T ss_pred ccCCcEEEEeehhhhcC------------HHHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHHcce
Confidence 33699999999882 34457788877763 3568888889889999999999874
No 355
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.70 E-value=0.011 Score=63.58 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=43.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeee-------------EEecccccc-c--cccchHHHHHHHHHHHhcCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFI-------------NISMSSITS-K--WFGEGEKYVKAVFSLASKIA 1043 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI-------------~Is~seL~s-k--~~GesEk~Ir~lF~~A~k~s 1043 (1116)
.-++|.||+|+|||++.+.|+... |.++- .+...+-.. . .+......+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 568999999999999999998533 44321 111111000 0 01111245677777776567
Q ss_pred CeEEEEcccc
Q 001244 1044 PSVVFVDEVD 1053 (1116)
Q Consensus 1044 PsIIfIDEID 1053 (1116)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 9999999985
No 356
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.67 E-value=0.0017 Score=76.75 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=57.3
Q ss_pred ccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCC
Q 001244 459 YLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (1116)
Q Consensus 459 ylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~ 531 (1116)
+--++.|.+|.-|.|.|.+...+.+-.++ ...+++|||.||+| .++++|||+||+.++++++-+|.+.+.
T Consensus 15 iGQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 15 IGQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred cCHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEEEeecceee
Confidence 33589999999999999777655432222 23458999999999 999999999999999999999998775
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.66 E-value=0.017 Score=62.85 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=48.7
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc--------------cc-------------------
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------------WF------------------- 1025 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk--------------~~------------------- 1025 (1116)
.....++++|+||+|||+++.+++.+. |...+.++..+-... +.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 102 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNS 102 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCc
Confidence 344688999999999999999997654 667766665321100 00
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEccccccc
Q 001244 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1026 GesEk~Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
...+..+..+........|.+|+||++..+.
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0012333444445555678999999998664
No 358
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.66 E-value=0.0096 Score=62.51 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=55.4
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHH--------------------HHHHHHHHHhcCCCe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1045 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk--------------------~Ir~lF~~A~k~sPs 1045 (1116)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998877777765543211 1111 233333221 23457
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHHHHHHhcC
Q 001244 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1116)
Q Consensus 1046 IIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldg 1081 (1116)
+|+||-+..|....-........+..+..|+..+..
T Consensus 79 ~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc
Confidence 999999998864321101112233444556655544
No 359
>PRK13695 putative NTPase; Provisional
Probab=96.65 E-value=0.018 Score=59.88 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.9
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988775
No 360
>PRK10536 hypothetical protein; Provisional
Probab=96.65 E-value=0.009 Score=66.73 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEECCCCCchHHHHHHHHHH
Q 001244 986 GILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~e 1007 (1116)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.64 E-value=0.0035 Score=62.20 Aligned_cols=28 Identities=54% Similarity=0.891 Sum_probs=24.7
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
|++.||||+|||++|+.++..++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 7899999999999999999999954444
No 362
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.64 E-value=0.01 Score=70.94 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
.+.|+|+|||| +++++|||+||+.+.
T Consensus 194 ~~~iil~GppG--tGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPG--VGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCC--CCHHHHHHHHHHHhc
Confidence 67999999999 999999999999875
No 363
>PRK03839 putative kinase; Provisional
Probab=96.63 E-value=0.0017 Score=67.63 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.7
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|+|.|+||+|||++++.||+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999998765
No 364
>PRK13947 shikimate kinase; Provisional
Probab=96.63 E-value=0.0019 Score=66.48 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=29.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+|+|.|+||+|||++|+.||+.+|++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999998755
No 365
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.59 E-value=0.018 Score=63.25 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=29.6
Q ss_pred CCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 978 ~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
+|+ .+...+|++||||+|||++|..++.+. |-+.+.++..
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 453 455789999999999999998776553 6666666543
No 366
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.58 E-value=0.005 Score=69.26 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=44.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCC----------eeeEEe-cccccccc-------cc------chHHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSKW-------FG------EGEKYVKAVFSLAS 1040 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~----------pfI~Is-~seL~sk~-------~G------esEk~Ir~lF~~A~ 1040 (1116)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+ +| +.......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222222 11221110 01 01112345777778
Q ss_pred cCCCeEEEEcccc
Q 001244 1041 KIAPSVVFVDEVD 1053 (1116)
Q Consensus 1041 k~sPsIIfIDEID 1053 (1116)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999974
No 367
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.58 E-value=0.0068 Score=57.78 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+++++||+|+|||+++.+++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888877766
No 368
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.57 E-value=0.014 Score=70.32 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=61.0
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc------ccc--------hHHHHHHHHHHHhcCC
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FGE--------GEKYVKAVFSLASKIA 1043 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~------~Ge--------sEk~Ir~lF~~A~k~s 1043 (1116)
..+..-+||+|+||+|||+|+..+|... +.++++++..+-.... +|. .+..+..+...+.+..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 3455678999999999999999998766 4567777764321110 110 1223456666667778
Q ss_pred CeEEEEccccccccCCC--CCchhHHHHHHHHHHHHH
Q 001244 1044 PSVVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVN 1078 (1116)
Q Consensus 1044 PsIIfIDEID~Llg~R~--~~~~~~~lr~IlneLL~~ 1078 (1116)
|.+|+||.|..+..... .++.....++++..|...
T Consensus 171 ~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ 207 (454)
T TIGR00416 171 PQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRL 207 (454)
T ss_pred CcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999998863321 122223345554444444
No 369
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.57 E-value=0.0078 Score=71.07 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=22.1
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhc
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHF 518 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f 518 (1116)
..+||+||+| .+++.|++|+|++.
T Consensus 137 n~l~l~G~~G--~GKThL~~ai~~~l 160 (405)
T TIGR00362 137 NPLFIYGGVG--LGKTHLLHAIGNEI 160 (405)
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHH
Confidence 4589999999 89999999999986
No 370
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.52 E-value=0.011 Score=65.42 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=28.4
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEec
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~ 1017 (1116)
.+..-++|.|+||+|||+++..+|..+ |.+++.+++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 344578999999999999999887764 667766665
No 371
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.52 E-value=0.0022 Score=64.36 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.4
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988665
No 372
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.51 E-value=0.018 Score=64.14 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~ 1010 (1116)
..++|+||+|+|||+|++.|++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 57999999999999999999998743
No 373
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.016 Score=68.07 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=56.4
Q ss_pred CcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc----c--
Q 001244 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----K-- 1023 (1116)
Q Consensus 953 Gldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s----k-- 1023 (1116)
+.+.+...+.+.+...+..+..+. ..+..-++|.||+|+|||+++..||..+ +..+..+++..... .
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~----~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk 254 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD----LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ 254 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce----ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH
Confidence 345555556555554333332221 2344678999999999999999999776 55555555433211 1
Q ss_pred ----------cccchHHHHHHHHHHHhc-CCCeEEEEcccccc
Q 001244 1024 ----------WFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1024 ----------~~GesEk~Ir~lF~~A~k-~sPsIIfIDEID~L 1055 (1116)
+.......+......+.. ..-.+||||=..+.
T Consensus 255 ~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 255 GYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 111222334444444431 23479999988754
No 374
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.025 Score=64.59 Aligned_cols=107 Identities=9% Similarity=0.054 Sum_probs=69.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCC-------------eeeEEeccccccccccchHHHHHHHHHHHhc-----CCCe
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 1045 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~-------------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k-----~sPs 1045 (1116)
...+||+|+.|.||+.+|+++|+.+-+ .++.++.. +... .-..++.+.+.... ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 357899999999999999999998722 12223210 0101 11234444443322 2456
Q ss_pred EEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1046 IIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
|++||++|.+- ....|.|+..++.. +..+++|.+|+.+..|-+.|++|..
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc~ 142 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRCQ 142 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCeE
Confidence 99999999872 23456777777764 3457777777788889999988753
No 375
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.49 E-value=0.025 Score=72.34 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=30.6
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
..+.|+|.||+| .+++.|+|++|+.++-++.-++
T Consensus 348 ~g~~i~l~GppG--~GKTtl~~~ia~~l~~~~~~i~ 381 (784)
T PRK10787 348 KGPILCLVGPPG--VGKTSLGQSIAKATGRKYVRMA 381 (784)
T ss_pred CCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEE
Confidence 346799999999 8999999999999999988776
No 376
>PRK00625 shikimate kinase; Provisional
Probab=96.49 E-value=0.0025 Score=67.11 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999998876
No 377
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.47 E-value=0.0055 Score=71.99 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=44.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCC-----eeeEEeccc----------------cccccccchHHHHH---HHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSS----------------ITSKWFGEGEKYVK---AVFSLAS 1040 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~-----pfI~Is~se----------------L~sk~~GesEk~Ir---~lF~~A~ 1040 (1116)
...||+||||+|||+|++.|++.... ..+.+...+ +.+.+....+..++ .+++.|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999987732 212221222 11222223333332 3444443
Q ss_pred c----CCCeEEEEccccccc
Q 001244 1041 K----IAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1041 k----~sPsIIfIDEID~Ll 1056 (1116)
. -...+||||||.++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 3 245799999999986
No 378
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.46 E-value=0.022 Score=64.65 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
.+-||+|||+|. +. ..+..+.|+..|+..++++.+|.+++.
T Consensus 100 ~~~vliiDe~d~-l~-~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 100 GGKVIIIDEFDR-LG-LADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred CCeEEEEECccc-cc-CHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 356999999998 42 233556778888988888888887773
No 379
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.038 Score=70.96 Aligned_cols=42 Identities=21% Similarity=0.269 Sum_probs=35.1
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCC
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~ 747 (1116)
..--|+||||+|. |. .+..|.|.+.||..+..+++|..++.+
T Consensus 119 ~~~KV~IIDEad~-lt--~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHM-VT--PQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred CCceEEEEechhh-cC--HHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 3455999999999 64 578899999999999999999888743
No 380
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.45 E-value=0.016 Score=62.26 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---C------CeeeEEeccc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 1019 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g------~pfI~Is~se 1019 (1116)
.+..-++|+||||+|||+|+..+|... + ..+++++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 344678999999999999999998764 3 6667777653
No 381
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.022 Score=67.13 Aligned_cols=114 Identities=15% Similarity=0.196 Sum_probs=63.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc-------ccc---------ccchHHHHHHHHHHHhc-CCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------SKW---------FGEGEKYVKAVFSLASK-IAP 1044 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~-------sk~---------~GesEk~Ir~lF~~A~k-~sP 1044 (1116)
+.|+|.||+|+|||+++..||..+ |..+..+++.... ..| .......+......+.. ...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 679999999999999999999877 4445445443221 111 11233444455544443 245
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1045 sIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
.+||||-..+.. ... ..+.++...+....+ ...+||+.+|....++. .++++|.
T Consensus 322 DvVLIDTaGRs~------kd~----~lm~EL~~~lk~~~P--devlLVLsATtk~~d~~-~i~~~F~ 375 (436)
T PRK11889 322 DYILIDTAGKNY------RAS----ETVEEMIETMGQVEP--DYICLTLSASMKSKDMI-EIITNFK 375 (436)
T ss_pred CEEEEeCccccC------cCH----HHHHHHHHHHhhcCC--CeEEEEECCccChHHHH-HHHHHhc
Confidence 899999887552 112 223334444433322 23456665555544433 4555554
No 382
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0023 Score=65.66 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.+||++|.||||||+++..||...+++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 37999999999999999999999999988864
No 383
>PRK14532 adenylate kinase; Provisional
Probab=96.40 E-value=0.003 Score=66.23 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=27.1
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
+|+|.||||+|||++|+.||+.+|+.++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999877654
No 384
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.37 E-value=0.0057 Score=67.99 Aligned_cols=97 Identities=21% Similarity=0.368 Sum_probs=59.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEec-ccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 1020 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~-seL 1020 (1116)
..++++++-.....+.+.+++.... +...++|+.|++|+|||+++++++.+.. ..++.+.- .++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3466777666555555555554211 1236899999999999999999999882 44554432 222
Q ss_pred ccc------ccc-chHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 1021 TSK------WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 1021 ~sk------~~G-esEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
.-. +.. ........++..+.+..|++|+|.||-
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 111 111 123456778888888999999999995
No 385
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.012 Score=68.87 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=29.0
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
.-..|+|||| +++++||+.||+++++.+.-|.+
T Consensus 49 ~SmIl~GPPG--~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 49 HSMILWGPPG--TGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred ceeEEECCCC--CCHHHHHHHHHHhhCCceEEecc
Confidence 4467999999 99999999999999999877764
No 386
>PRK06217 hypothetical protein; Validated
Probab=96.36 E-value=0.0036 Score=65.78 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|+|.|++|+|||++|++|++.++++++.++
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 46999999999999999999999999988765
No 387
>PRK09354 recA recombinase A; Provisional
Probab=96.35 E-value=0.022 Score=66.25 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=50.4
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc----------------cccchHHHHHHHHHHHhcCC
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKIA 1043 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk----------------~~GesEk~Ir~lF~~A~k~s 1043 (1116)
..+-++|+||+|||||+||-.++.+. |...++|+...-... .....++.+..+-...+...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~ 138 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGA 138 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 44578899999999999998877554 777777776541110 01123333333434455667
Q ss_pred CeEEEEcccccccc
Q 001244 1044 PSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1044 PsIIfIDEID~Llg 1057 (1116)
+.+|+||-|-.|.+
T Consensus 139 ~~lIVIDSvaaL~~ 152 (349)
T PRK09354 139 VDLIVVDSVAALVP 152 (349)
T ss_pred CCEEEEeChhhhcc
Confidence 89999999999875
No 388
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.35 E-value=0.019 Score=60.33 Aligned_cols=70 Identities=21% Similarity=0.311 Sum_probs=47.1
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc----------------c-ccchHHHHHHHHHHHhcCCCeEEEE
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------W-FGEGEKYVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk----------------~-~GesEk~Ir~lF~~A~k~sPsIIfI 1049 (1116)
+|+.|++|+|||++|..++...+.+++++....-.+. | ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999988878888765532211 1 0112223444442222 4679999
Q ss_pred ccccccccC
Q 001244 1050 DEVDSMLGR 1058 (1116)
Q Consensus 1050 DEID~Llg~ 1058 (1116)
|-+..|...
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 999988743
No 389
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.32 E-value=0.012 Score=77.13 Aligned_cols=117 Identities=31% Similarity=0.394 Sum_probs=75.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc--cccc-----c--hHH-HHHHHHHHHhcCCCeEEEEccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFG-----E--GEK-YVKAVFSLASKIAPSVVFVDEVDS 1054 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s--k~~G-----e--sEk-~Ir~lF~~A~k~sPsIIfIDEID~ 1054 (1116)
+++||.|.||+|||.|..|+|+..|-.+++|+.++-.. ..+| + .+- ....=|-.|.+. -.-|++||+.-
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 45999999999999999999999999999999886421 1222 2 111 123344455442 36889999962
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhcC---CC-------cCCCCCEEEEEEeCCCC------CCcHHHHhhcCCeE
Q 001244 1055 MLGRRENPGEHEAMRKMKNEFMVNWDG---LR-------TKDKERVLVLAATNRPF------DLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1055 Llg~R~~~~~~~~lr~IlneLL~~Ldg---l~-------~k~~~kVLVIaTTNrp~------~LD~ALlRRF~r~I 1114 (1116)
- . +.++.-|-..+|. .. -.-..+.+|.||-|..+ .|+..++.||..+.
T Consensus 1623 a--------S----QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~ 1686 (4600)
T COG5271 1623 A--------S----QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVK 1686 (4600)
T ss_pred h--------H----HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEE
Confidence 2 1 2233333233321 11 11234678888888654 59999999997543
No 390
>PRK04195 replication factor C large subunit; Provisional
Probab=96.32 E-value=0.043 Score=66.51 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEeccc
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1116)
.+.+||+||+| +++++||+|||++++..++.++.++
T Consensus 39 ~~~lLL~GppG--~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 39 KKALLLYGPPG--VGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEcccc
Confidence 57899999999 9999999999999998888777654
No 391
>PRK10436 hypothetical protein; Provisional
Probab=96.30 E-value=0.037 Score=66.80 Aligned_cols=94 Identities=18% Similarity=0.281 Sum_probs=62.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEecc-cc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1020 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~s-eL 1020 (1116)
..+++++|-.+...+.+.+.+.. +..-||++||+|+|||++..++..+++ .+++.+--+ ++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 35788888878877778776642 223589999999999998888777763 344443311 21
Q ss_pred ccc-----cccc-hHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 1021 TSK-----WFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 1021 ~sk-----~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
.-. .++. ...........+-++.|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 111 1111 12245667777788999999999995
No 392
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.29 E-value=0.0037 Score=65.04 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=25.5
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
|+|+|+||+|||++|+.||..+|+..+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998655543
No 393
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.29 E-value=0.0099 Score=71.25 Aligned_cols=77 Identities=9% Similarity=0.188 Sum_probs=49.8
Q ss_pred CCeEEEEcchhhhhcC---ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCcc
Q 001244 704 SPLIVFVKDIEKSLTG---NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNF 780 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~---~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~ 780 (1116)
++-||+|||++.++.. +.++++.|....+ .+..+||++...|. ++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~------------------------------~l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQ------------------------------KL 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHH------------------------------HH
Confidence 5779999999985442 3567776665555 35566676655221 11
Q ss_pred cccccccCcchHHHhhhhcccc--ccccccCCchHHHHHHHHHH
Q 001244 781 SRLHDRSKETPKALKQISRLFP--NKVTIQLPQDEALLSDWKQQ 822 (1116)
Q Consensus 781 ~~~~~~~~~~~k~~~~i~klFp--n~I~I~~P~DEa~LRRfe~q 822 (1116)
..+.+.+.++|. ..+.|++|++|.+...+++.
T Consensus 242 ----------~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 242 ----------SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred ----------HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 123445777775 46679999999998665544
No 394
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.033 Score=67.94 Aligned_cols=40 Identities=25% Similarity=0.457 Sum_probs=32.4
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
..-|++|||+|. |. ...++.|...|+.-++.+++|.+++.
T Consensus 128 ~~KVvIIDEa~~-Ls--~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 128 KHKIFIIDEVHM-LS--KGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred CcEEEEEEChhh-cC--HHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 345999999998 53 46688899999988889998888873
No 395
>PRK13949 shikimate kinase; Provisional
Probab=96.28 E-value=0.0036 Score=65.41 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+.|+|.|+||+|||++++.+|+.++++|+..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999998876
No 396
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.27 E-value=0.037 Score=60.20 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=29.3
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEecc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~s 1018 (1116)
.+..-++|.|+||+|||+++..++... +.+++.+++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 344678999999999999988887665 7777777643
No 397
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.25 E-value=0.03 Score=65.76 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=46.6
Q ss_pred EEEEECCCCCchHHHHHHHHHHhC-----CeeeEEecc-ccc-----------cccccchHHHHHHHHHHHhcCCCeEEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 1048 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg-----~pfI~Is~s-eL~-----------sk~~GesEk~Ir~lF~~A~k~sPsIIf 1048 (1116)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ...+|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988772 345554322 211 011122222455677778888999999
Q ss_pred Ecccc
Q 001244 1049 VDEVD 1053 (1116)
Q Consensus 1049 IDEID 1053 (1116)
|.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99995
No 398
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.25 E-value=0.036 Score=64.00 Aligned_cols=99 Identities=17% Similarity=0.303 Sum_probs=56.4
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHhCCee-eEEeccccc-------cccccch---HHHHHHHHHHHhcCCCeEEEE
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSIT-------SKWFGEG---EKYVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~elg~pf-I~Is~seL~-------sk~~Ges---Ek~Ir~lF~~A~k~sPsIIfI 1049 (1116)
..+++|+.|+|+-|.|||+|.-..-+.+-.+- .++..-.++ ..+.|++ .....+++.. --||.|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~-----~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAE-----TRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhc-----CCEEEe
Confidence 34679999999999999999998888773321 111111111 1112322 1111222221 249999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1050 DEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
||++-= +.++--.+.+++.+|+ ...|.+++|+|.+
T Consensus 137 DEF~Vt-----DI~DAMiL~rL~~~Lf----------~~GV~lvaTSN~~ 171 (367)
T COG1485 137 DEFEVT-----DIADAMILGRLLEALF----------ARGVVLVATSNTA 171 (367)
T ss_pred eeeeec-----ChHHHHHHHHHHHHHH----------HCCcEEEEeCCCC
Confidence 998622 2222223455555554 3579999999964
No 399
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.23 E-value=0.02 Score=62.03 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEeccc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~se 1019 (1116)
.+..-++|+||||+|||+++..++... +...+.++...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 344678999999999999999998553 25677777644
No 400
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.22 E-value=0.016 Score=62.21 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=57.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CC--eeeEEecccc------------cc-ccc----c-chHHHHHHHHHHHhc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GA--NFINISMSSI------------TS-KWF----G-EGEKYVKAVFSLASK 1041 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~--pfI~Is~seL------------~s-k~~----G-esEk~Ir~lF~~A~k 1041 (1116)
+-++|.||+|+|||+.+..||..+ +. -++..|.-.+ ++ .+. . .....+++.++.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 568999999999999888888776 33 3444443211 01 000 0 122334455555555
Q ss_pred CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc
Q 001244 1042 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1116)
Q Consensus 1042 ~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD 1103 (1116)
..-.+||||-..+. +.+...+.++ ..++..+ . ....++|+.++-..+.++
T Consensus 82 ~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~---~--~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 82 KGYDLVLIDTAGRS------PRDEELLEEL-KKLLEAL---N--PDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp TTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHH---S--SSEEEEEEEGGGGGHHHH
T ss_pred cCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhc---C--CccceEEEecccChHHHH
Confidence 45579999987643 1222222332 2333333 1 124466666666666665
No 401
>PRK06762 hypothetical protein; Provisional
Probab=96.20 E-value=0.012 Score=60.42 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=29.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~ 1021 (1116)
.-|+|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4688999999999999999999996566666654443
No 402
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.19 E-value=0.0042 Score=64.92 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.3
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
|+|+|+||+|||++|+.||..+|+.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998777654
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.19 E-value=0.075 Score=63.53 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=47.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc--------------c-cccc-----chHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------S-KWFG-----EGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~--------------s-k~~G-----esEk~Ir~lF~~A 1039 (1116)
++.-|+|+|++|+|||+++..||..+ |..+.-+++.... . .+++ .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999877 6666666553321 0 0111 1122334455556
Q ss_pred hcCCCeEEEEcccccc
Q 001244 1040 SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~L 1055 (1116)
+...-.+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556689999988754
No 404
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.19 E-value=0.035 Score=58.41 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+...++|.||+||||++|.+++|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44679999999999999999999755
No 405
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.18 E-value=0.048 Score=68.76 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=33.3
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCC
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~ 747 (1116)
.--||+|||+|. |. .+..|.|.+.||.-+.++++|.++|.+
T Consensus 119 r~KVIIIDEah~-LT--~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 119 RFKVYMIDEVHM-LT--NHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CceEEEEeChhh-CC--HHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 346999999999 53 467888889999988899988888843
No 406
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.18 E-value=0.026 Score=65.03 Aligned_cols=116 Identities=20% Similarity=0.232 Sum_probs=61.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-------cc--------c----c-chHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW--------F----G-EGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-------k~--------~----G-esEk~Ir~lF~~A 1039 (1116)
++.-++|.||+|+|||+++..||..+ +..+.-+++..... .| + + .....+...+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999887 45555454432110 01 0 0 1111222333444
Q ss_pred hcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-cCCCCCEEEEEEeCCCCCCcHH
Q 001244 1040 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATNRPFDLDEA 1105 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-~k~~~kVLVIaTTNrp~~LD~A 1105 (1116)
....-.+|+||=..++- .....+.+ +..+...++... ......++|+-+|...+.+..+
T Consensus 193 ~~~~~D~ViIDTaGr~~------~~~~l~~e-L~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 193 KARGIDVLIIDTAGRLH------NKTNLMEE-LKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred HhCCCCEEEEeCCCCCc------CCHHHHHH-HHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 44556899999887652 11111121 122222222111 1123457888888665555543
No 407
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.18 E-value=0.029 Score=60.66 Aligned_cols=98 Identities=20% Similarity=0.393 Sum_probs=58.7
Q ss_pred CCCCCCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEecccccc--------------c--------cc------
Q 001244 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS--------------K--------WF------ 1025 (1116)
Q Consensus 978 ~~l~~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~s--------------k--------~~------ 1025 (1116)
+|+ .+...+|++||||+|||.++..++.+. |-+.+.++..+-.. . ++
T Consensus 14 GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 14 GGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 443 344689999999999999998877544 77777776542100 0 00
Q ss_pred -----cchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhc
Q 001244 1026 -----GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1116)
Q Consensus 1026 -----GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld 1080 (1116)
...+..+..+...+....+.+|+||-+..+. .... ....+..+..|...+.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~~---~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYDD---PEELRRFLRALIKFLK 148 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSSS---GGGHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcCC---HHHHHHHHHHHHHHHH
Confidence 1123344556666666777999999999883 2222 1223455556665553
No 408
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.18 E-value=0.0045 Score=61.48 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.2
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
|+|.|+||+|||++|+.||..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 409
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.17 E-value=0.042 Score=58.62 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEECCCCCchHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
+.++|+||.|+|||+|.+.|+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4699999999999999999983
No 410
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.17 E-value=0.039 Score=68.24 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=62.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEecc-cc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1020 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~s-eL 1020 (1116)
..+++++|-.....+.+.+++.. +...||++||+|+|||++..++..+++ .+++.+--+ ++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35688888888888888776642 223588999999999999888887773 344443221 11
Q ss_pred -----cccccc-chHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 1021 -----TSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 1021 -----~sk~~G-esEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
....+. .........+..+-+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 111111 111245667777788999999999995
No 411
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.17 E-value=0.044 Score=61.14 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
.+..-+|++|+||||||++|..+|.+. |-+.+.++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345678999999999999999887654 556666554
No 412
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.14 E-value=0.018 Score=69.88 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEecc-cc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1020 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~s-eL 1020 (1116)
..+++++|-.++..+.+.+++.. +..-+|++||+|+|||++.+++..++. ..++.+.-+ ++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45788888878888888776642 212478999999999999998887773 345544321 11
Q ss_pred ccc-----cccc-hHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 1021 TSK-----WFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 1021 ~sk-----~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
.-. .+.. ...........+.++.|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 111 1111 11234556666778899999999995
No 413
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.14 E-value=0.01 Score=68.84 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC----CeeeEEecc-ccc---------cccccchHHHHHHHHHHHhcCCCeEEEEc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg----~pfI~Is~s-eL~---------sk~~GesEk~Ir~lF~~A~k~sPsIIfID 1050 (1116)
..+|+.||+|+|||++.++++..+. ..++.+.-+ ++. ....|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4689999999999999999998773 334433211 111 01122222235666777778899999999
Q ss_pred ccc
Q 001244 1051 EVD 1053 (1116)
Q Consensus 1051 EID 1053 (1116)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 414
>PRK14531 adenylate kinase; Provisional
Probab=96.14 E-value=0.0054 Score=64.52 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+++||||+|||++++.||..+|++++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999877653
No 415
>PF13479 AAA_24: AAA domain
Probab=96.09 E-value=0.021 Score=61.74 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=38.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc-ccc-----cc-chHHHHHHHHHHH--hcCCCeEEEEcccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKW-----FG-EGEKYVKAVFSLA--SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~-sk~-----~G-esEk~Ir~lF~~A--~k~sPsIIfIDEID~L 1055 (1116)
..+||||+||+|||++|..+- +.-|+.+...... ..+ +. .+-..+.+.+..+ ....-.+|+||.|+.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~---k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLP---KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCC---CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 579999999999999998881 1122333333110 011 00 1222344444332 2345579999988876
Q ss_pred c
Q 001244 1056 L 1056 (1116)
Q Consensus 1056 l 1056 (1116)
.
T Consensus 81 ~ 81 (213)
T PF13479_consen 81 E 81 (213)
T ss_pred H
Confidence 3
No 416
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.09 E-value=0.027 Score=75.12 Aligned_cols=52 Identities=23% Similarity=0.449 Sum_probs=40.6
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~ 1010 (1116)
.+++++|++...+++...+..- ....+-|-|+|++|+|||+||+++++.+..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4678999999998888776421 122356889999999999999999988743
No 417
>PRK13948 shikimate kinase; Provisional
Probab=96.08 E-value=0.0063 Score=64.61 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.++...|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 345578999999999999999999999999999766
No 418
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.08 E-value=0.0055 Score=61.75 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=26.0
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
++|.|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999998877654
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.05 E-value=0.063 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
+.++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 420
>PRK05973 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.054 Score=59.99 Aligned_cols=38 Identities=37% Similarity=0.505 Sum_probs=29.6
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
..+..-+||.|+||+|||+++-.+|.+. |.+++.++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3455689999999999999998887755 7777666644
No 421
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.02 E-value=0.042 Score=58.68 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
..++|+||.|+|||++.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5799999999999999999993
No 422
>PRK14530 adenylate kinase; Provisional
Probab=96.01 E-value=0.0065 Score=65.46 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.5
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.|+|.||||+|||++|+.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887743
No 423
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0066 Score=64.23 Aligned_cols=32 Identities=38% Similarity=0.725 Sum_probs=26.2
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se 1019 (1116)
.|+|.||||+||||+|+.||+.+ ++..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhH
Confidence 58999999999999999999994 455555443
No 424
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.00 E-value=0.05 Score=65.51 Aligned_cols=95 Identities=21% Similarity=0.198 Sum_probs=63.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc----c
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS----S 1019 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s----e 1019 (1116)
...+|+++|......+.+.+.+.. |..=+|++||.|+|||+...++..+++.+..+|..- +
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 356788898888888888877642 323467889999999999999999996555543221 1
Q ss_pred cccc-----cccc-hHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 1020 ITSK-----WFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 1020 L~sk-----~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
+... -+.. ..-.....+...-++.|+||+|.||.
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 1110 0111 11123455566678899999999995
No 425
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.99 E-value=0.047 Score=61.53 Aligned_cols=73 Identities=21% Similarity=0.308 Sum_probs=44.9
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-------ccc---c----------chHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KWF---G----------EGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-------k~~---G----------esEk~Ir~lF~~A 1039 (1116)
+++-++|.||+|+|||+++..+|..+ |..+.-+++..+.. .|. | .....+...+..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 44778899999999999999999877 55555555442210 010 0 1112223334444
Q ss_pred hcCCCeEEEEcccccc
Q 001244 1040 SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~L 1055 (1116)
....-.+|+||=..++
T Consensus 151 ~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 151 KARNIDVVLIDTAGRL 166 (272)
T ss_pred HHCCCCEEEEeCCCCC
Confidence 4445679999988755
No 426
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.95 E-value=0.025 Score=64.63 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=47.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEecc-ccc-------cccccchHHHHHHHHHHHhcCCCeEEEEcc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~s-eL~-------sk~~GesEk~Ir~lF~~A~k~sPsIIfIDE 1051 (1116)
.++|+.|++|+|||+++++++... +..++.+.-. ++. .-..+........++..+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 589999999999999999999886 2334433211 211 000111122567788888999999999999
Q ss_pred cc
Q 001244 1052 VD 1053 (1116)
Q Consensus 1052 ID 1053 (1116)
|-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 95
No 427
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.94 E-value=0.006 Score=62.44 Aligned_cols=30 Identities=40% Similarity=0.676 Sum_probs=26.0
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
|+|.||+|+|||++|+.|++.++..++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D 30 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGD 30 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCc
Confidence 578999999999999999999997776543
No 428
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.93 E-value=0.069 Score=57.75 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=29.0
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
.+..-++|.|+||+|||.++..++.+. |-+.+.++..
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345688999999999999999888654 6676666654
No 429
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.92 E-value=0.0077 Score=62.12 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..++|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999998765
No 430
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.055 Score=67.37 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=34.6
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCC
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~ 747 (1116)
..--|++|||+|. | +.+..|.|.+.||.-++++++|..+|.+
T Consensus 123 gr~KViIIDEah~-L--s~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 123 GRFKVYMIDEVHM-L--TNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred CCceEEEEEChHh-c--CHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 3456999999999 5 4567889999999888999999888853
No 431
>PLN03025 replication factor C subunit; Provisional
Probab=95.91 E-value=0.044 Score=62.77 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=22.3
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhc
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHF 518 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f 518 (1116)
+.+||+||+| ++++.+|+|||+++
T Consensus 35 ~~lll~Gp~G--~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPG--TGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHH
Confidence 4599999999 99999999999986
No 432
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.90 E-value=0.16 Score=61.63 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHH
Q 001244 429 SARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQE 508 (1116)
Q Consensus 429 ~~r~~~~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe 508 (1116)
..+.+..+++|.+.|+.- |+...++.-|+. +...|||.|||| ++++
T Consensus 8 ~~~i~~l~~~l~~~i~gr---------------e~vI~lll~aal-----------------ag~hVLL~GpPG--TGKT 53 (498)
T PRK13531 8 AERISRLSSALEKGLYER---------------SHAIRLCLLAAL-----------------SGESVFLLGPPG--IAKS 53 (498)
T ss_pred HHHHHHHHHHHhhhccCc---------------HHHHHHHHHHHc-----------------cCCCEEEECCCC--hhHH
Confidence 345566777777776654 455555555544 357899999999 9999
Q ss_pred HHHHHHHhhcCC
Q 001244 509 TLAKALAKHFSA 520 (1116)
Q Consensus 509 ~LaKALA~~f~a 520 (1116)
+||||||+.++.
T Consensus 54 ~LAraLa~~~~~ 65 (498)
T PRK13531 54 LIARRLKFAFQN 65 (498)
T ss_pred HHHHHHHHHhcc
Confidence 999999998763
No 433
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.90 E-value=0.036 Score=65.89 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=59.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh----CCeeeEEecccccc-------cc---cc---chHHHHHHHHHHHhcCCCeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS-------KW---FG---EGEKYVKAVFSLASKIAPSVV 1047 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~s-------k~---~G---esEk~Ir~lF~~A~k~sPsII 1047 (1116)
.-++|.||+|+|||+++..||..+ |..+.-+++..... .| .| .....+..+...+......+|
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 468899999999999999999754 44454444433211 01 01 111123344444444456889
Q ss_pred EEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC-CCCCEEEEEEeCCCCCCcHHH
Q 001244 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFDLDEAV 1106 (1116)
Q Consensus 1048 fIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k-~~~kVLVIaTTNrp~~LD~AL 1106 (1116)
|||=..... ..... +.++...++..... ....+||+-+|...+.+..++
T Consensus 304 LIDTaGr~~------rd~~~----l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 304 LIDTAGYSH------RNLEQ----LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEeCCCCCc------cCHHH----HHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 999754331 11122 22233222222111 235678888887776664443
No 434
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.89 E-value=0.0077 Score=66.20 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|+|.||||+|||++|+.||+.+|++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999999998777643
No 435
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.89 E-value=0.011 Score=69.99 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=55.3
Q ss_pred hhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCCC
Q 001244 462 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (1116)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~g 532 (1116)
++.|.+|..|.|-|.+...+..-. +-.-.+++|||.||+| .++++|||+||+.++++++.+|.+.+..
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~-~~e~~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~e 88 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEEL-RDEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTE 88 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc-ccccCCceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhcc
Confidence 889999999999998776544211 1112348899999999 9999999999999999999999988753
No 436
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.083 Score=65.73 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=32.5
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
...-||+|||+|. |. .+..+.|...|+..++.+++|..++.
T Consensus 118 g~~kVIIIDEad~-Lt--~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 118 GRYKVFIIDEAHM-LT--REAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred CCceEEEEEChHh-CC--HHHHHHHHHHhhccCCCEEEEEecCC
Confidence 3456999999999 53 45567888899988888888888874
No 437
>PRK14528 adenylate kinase; Provisional
Probab=95.85 E-value=0.0084 Score=63.47 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
+.|++.||||+|||++|+.||..+|++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999877653
No 438
>PRK13764 ATPase; Provisional
Probab=95.85 E-value=0.016 Score=71.75 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=41.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC---CeeeEEe-cccc-----ccccccchHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is-~seL-----~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
.++|++||||+|||+++++++..+. ..+..+. ..++ ...+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998883 3333332 1121 11111 000111223333356789999999995
No 439
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.85 E-value=0.032 Score=66.10 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=46.1
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
-++|+||.+||||++++.+.....-.++.++..++......- ...-..+..++......||||||..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc
Confidence 689999999999999988888885556776666554432211 22223333333334579999999876
No 440
>PHA02774 E1; Provisional
Probab=95.84 E-value=0.025 Score=69.31 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeE-Eec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~-Is~ 1017 (1116)
.+++|+||||||||++|.+|++.++..++. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 589999999999999999999999654443 443
No 441
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.84 E-value=0.094 Score=55.43 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.5
Q ss_pred EEEECCCCCchHHHHHHHHH
Q 001244 987 ILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~ 1006 (1116)
++|+||.|.|||++.+.|+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999993
No 442
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.077 Score=64.17 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=35.4
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCC
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~ 747 (1116)
...-|++|||+|. | +.+..|.|.+.||.-+++|++|.+++.+
T Consensus 120 g~~KV~IIDEah~-L--s~~A~NALLKtLEEPp~~viFILaTte~ 161 (484)
T PRK14956 120 GKYKVYIIDEVHM-L--TDQSFNALLKTLEEPPAHIVFILATTEF 161 (484)
T ss_pred CCCEEEEEechhh-c--CHHHHHHHHHHhhcCCCceEEEeecCCh
Confidence 4567999999999 5 4578889999999888999999999843
No 443
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.83 E-value=0.0075 Score=62.85 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
+-|+|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4589999999999999999999998877765544
No 444
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.82 E-value=0.007 Score=63.70 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
++|.|.|++|+|||++.+++|+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999999766
No 445
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.81 E-value=0.092 Score=56.87 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
.+...++|+|+||+|||+++..++.+. +-+.+.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 345789999999999999999877543 555555553
No 446
>PRK04328 hypothetical protein; Provisional
Probab=95.81 E-value=0.084 Score=58.60 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=28.1
Q ss_pred CCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 978 ~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
+|+ .+...+|++|+||||||.|+..++.+. |-+.+.++.
T Consensus 18 GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 443 345789999999999999988877553 555555544
No 447
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.79 E-value=0.038 Score=60.95 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.3
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCeeeEEecccc
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL 1020 (1116)
|+|+|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999988 566777765444
No 448
>PRK02496 adk adenylate kinase; Provisional
Probab=95.79 E-value=0.0091 Score=62.52 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=27.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..++|.||||+|||++|+.||..++++.+.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 3589999999999999999999999877654
No 449
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.78 E-value=0.12 Score=60.61 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeecc
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~ 745 (1116)
..-|++|||+|. +. .+..+.|.+.|+..++.+++|.+++
T Consensus 119 ~~kviIIDEa~~-l~--~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 119 RFKVYLIDEVHM-LS--RHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred CceEEEEEChhh-cC--HHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 346999999999 53 3456778888998888888887776
No 450
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.77 E-value=0.22 Score=57.23 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=38.4
Q ss_pred cccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCe
Q 001244 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1116)
Q Consensus 452 sf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~ 521 (1116)
+|+++-.+ +++++.|..+.. ... .++.+||+||+| .+++++|++||+.+...
T Consensus 12 ~~~~iig~--~~~~~~l~~~~~----~~~----------~~~~~Ll~G~~G--~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 12 TFEDVIGQ--EHIVQTLKNAIK----NGR----------IAHAYLFSGPRG--TGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHhhccCc--HHHHHHHHHHHH----cCC----------CCeEEEEECCCC--CCHHHHHHHHHHHhcCC
Confidence 56665444 888888876542 111 245689999999 99999999999998765
No 451
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.74 E-value=0.027 Score=65.24 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=48.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEe-cccccc----c----c-----ccchHHHHHHHHHHHhcCCCeEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS----K----W-----FGEGEKYVKAVFSLASKIAPSVVF 1048 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is-~seL~s----k----~-----~GesEk~Ir~lF~~A~k~sPsIIf 1048 (1116)
.+||+.|++|+|||+++++++.... ..++.+. ..++.- . + .|...-...+++..+.+..|..|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 5899999999999999999998883 3333331 112210 0 0 112223467788899999999999
Q ss_pred Ecccc
Q 001244 1049 VDEVD 1053 (1116)
Q Consensus 1049 IDEID 1053 (1116)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99995
No 452
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.73 E-value=0.054 Score=65.18 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=50.1
Q ss_pred CCeEEEEcchhhhhcC----ChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCc
Q 001244 704 SPLIVFVKDIEKSLTG----NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~----~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~ 779 (1116)
++-+|+|||++. +.+ +.++++.|-...+ .+..+||+|...+ .+
T Consensus 202 ~~dvLiIDDiq~-l~~k~~~qeelf~l~N~l~~--~~k~IIlts~~~p------------------------------~~ 248 (445)
T PRK12422 202 NVDALFIEDIEV-FSGKGATQEEFFHTFNSLHT--EGKLIVISSTCAP------------------------------QD 248 (445)
T ss_pred cCCEEEEcchhh-hcCChhhHHHHHHHHHHHHH--CCCcEEEecCCCH------------------------------HH
Confidence 455999999998 654 4566665555544 4667777776622 11
Q ss_pred ccccccccCcchHHHhhhhcccc--ccccccCCchHHHHHHHHHHH
Q 001244 780 FSRLHDRSKETPKALKQISRLFP--NKVTIQLPQDEALLSDWKQQL 823 (1116)
Q Consensus 780 ~~~~~~~~~~~~k~~~~i~klFp--n~I~I~~P~DEa~LRRfe~ql 823 (1116)
+. .+.+.+.++|. -.+.|++|++|.+...+++..
T Consensus 249 l~----------~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 249 LK----------AMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred Hh----------hhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 21 12346888886 677889999998876555433
No 453
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=95.73 E-value=0.0085 Score=76.67 Aligned_cols=100 Identities=25% Similarity=0.290 Sum_probs=63.5
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccccc-----c--hHHHHHHHH---HH--HhcCCCeEEEEccccc
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVF---SL--ASKIAPSVVFVDEVDS 1054 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~G-----e--sEk~Ir~lF---~~--A~k~sPsIIfIDEID~ 1054 (1116)
+|++||||.|||+.|.++|.++|+.+++++.+...+++.. + .-..+..-| .. ..+....||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 6899999999999999999999999999999877655322 1 112333333 00 0111224999999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1055 Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
+++ .. +..+.++...... ..+-||+|+|....
T Consensus 440 ~~~-~d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~ 471 (871)
T KOG1968|consen 440 MFG-ED--------RGGVSKLSSLCKK------SSRPLVCTCNDRNL 471 (871)
T ss_pred ccc-hh--------hhhHHHHHHHHHh------ccCCeEEEecCCCC
Confidence 975 21 2223333333221 23457788876554
No 454
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.17 Score=63.34 Aligned_cols=55 Identities=27% Similarity=0.320 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcC-CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 689 AINELFEVALNESK-SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 689 ~i~~L~evl~~esk-~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
.|+++.+.+....- ..--||+|||+|. | +.+..+.|.+.||.-++.+++|+.++.
T Consensus 105 ~IReii~~a~~~p~~~~~KViIIDEad~-L--t~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 105 NIRELIERAQFAPVQARWKVYVIDECHM-L--STAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHHHHHHHhhChhcCCceEEEEECccc-c--CHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 45555555533211 2345999999998 5 356788999999998899999988873
No 455
>PRK13946 shikimate kinase; Provisional
Probab=95.70 E-value=0.009 Score=62.99 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=30.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
+.|+|.|.+|+|||++++.||+.+|++|+..+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 579999999999999999999999999987763
No 456
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.70 E-value=0.026 Score=65.61 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
-+++.|.||||||.||-.+|..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58899999999999999999988
No 457
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.69 E-value=0.011 Score=61.95 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=30.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
..|+|.|++|+|||++++.+|..++++|+..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 479999999999999999999999999988764
No 458
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.054 Score=58.58 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
-|+|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48899999999999999999999
No 459
>PRK06547 hypothetical protein; Provisional
Probab=95.68 E-value=0.012 Score=61.99 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
++.-|++.|++|+|||++|+.|++.++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467889999999999999999999988777654
No 460
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.67 E-value=0.067 Score=68.03 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=49.3
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc------------c-c---ccchHHHHHHHHHHHhcC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS------------K-W---FGEGEKYVKAVFSLASKI 1042 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s------------k-~---~GesEk~Ir~lF~~A~k~ 1042 (1116)
.+..-++|+||+|+|||+|+..++... |-..+.++..+-+. . + ....+..+..+-...+..
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~ 137 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSG 137 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcC
Confidence 345678899999999999997655433 66777777654211 0 0 112233333333344555
Q ss_pred CCeEEEEcccccccc
Q 001244 1043 APSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1043 sPsIIfIDEID~Llg 1057 (1116)
.+.+|+||-|..|+.
T Consensus 138 ~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 138 ALDIVVIDSVAALVP 152 (790)
T ss_pred CCeEEEEcchhhhcc
Confidence 789999999999985
No 461
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.65 E-value=0.015 Score=66.54 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=32.0
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..+...|+|.|.+|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445578999999999999999999999999999655
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.64 E-value=0.024 Score=59.81 Aligned_cols=69 Identities=30% Similarity=0.498 Sum_probs=45.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEecc-cccc---ccc----------cchHHHHHHHHHHHhcCCCeEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVVF 1048 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~s-eL~s---k~~----------GesEk~Ir~lF~~A~k~sPsIIf 1048 (1116)
..++|.||+|+|||+++++++.... ...+.+.-. ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998772 222222111 1100 000 11223466777788888999999
Q ss_pred Ecccc
Q 001244 1049 VDEVD 1053 (1116)
Q Consensus 1049 IDEID 1053 (1116)
+.||-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99994
No 463
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.64 E-value=0.012 Score=61.06 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.-|+|.||||+|||++|+.|++.+|+..+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3688999999999999999999998766543
No 464
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.64 E-value=0.06 Score=54.57 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.7
Q ss_pred eEEEEECCCCCchHH-HHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTM-LAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~-LArAIA~el 1008 (1116)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 469999999999999 555555554
No 465
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.15 Score=62.30 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcC-CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 690 INELFEVALNESK-SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 690 i~~L~evl~~esk-~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
++++.+.+....- ..+-||+|||+|. + ..+..+.|...|+.-+..+++|..+++
T Consensus 101 iR~l~~~~~~~p~~~~~kVVIIDEad~-l--s~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 101 VRDLREKVLLAPLRGGRKVYILDEAHM-M--SKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred HHHHHHHHhhccccCCCeEEEEECccc-c--CHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 4444444433111 4567999999997 4 356678888899988788777776663
No 466
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.61 E-value=0.075 Score=62.22 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=23.4
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..+++|+.|||.-|||||+|.-..-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999987766444
No 467
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.08 Score=65.50 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhc-CCCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCC
Q 001244 689 AINELFEVALNES-KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (1116)
Q Consensus 689 ~i~~L~evl~~es-k~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~ 747 (1116)
.|+.|.+.+..-. ....-|++|||+|. | ..+..|.|.+.|+..+..+++|.+++.+
T Consensus 103 ~ir~i~~~v~~~p~~~~~kViIIDE~~~-L--t~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 103 EIRDIRDKVKYAPSEAKYKVYIIDEVHM-L--STGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHHHHHHHhhCcccCCeEEEEEECccc-C--CHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 3445544443211 13456999999998 4 3567889999999999999999888744
No 468
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.59 E-value=0.12 Score=64.62 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
..-|++|||+|. |.. +..+.|.+.|+..++.+++|.+++.
T Consensus 118 k~KV~IIDEVh~-LS~--~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 118 RFKVYLIDEVHM-LST--HSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CcEEEEEechHh-cCH--HHHHHHHHHHhcCCCCcEEEEEECC
Confidence 456999999998 543 5778899999998898888887773
No 469
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.57 E-value=0.012 Score=63.43 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=26.7
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.|+++||||+|||++|+.||..++++.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999766653
No 470
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.55 E-value=0.18 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+.+++.||.|+|||.+.++++-.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999987544
No 471
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.53 E-value=0.067 Score=61.32 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEeccc
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~se 1019 (1116)
...-++|+||||+|||.++..+|... +..+++|+..+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 34678899999999999999998763 34677777654
No 472
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.52 E-value=0.033 Score=70.77 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=56.2
Q ss_pred EEEEECCCCCchHHHHHHHHHHh---C--CeeeEEeccc----cccccccchHHHHHHHHHHH----------hcCCCeE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 1046 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el---g--~pfI~Is~se----L~sk~~GesEk~Ir~lF~~A----------~k~sPsI 1046 (1116)
-++|.|+||||||+++++|...+ + .+++-+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999998766 3 3333222111 11111222233444444321 1134579
Q ss_pred EEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1047 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1047 IfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|||+-.+- ..++..|+..+ . .+.+++++|=.+..-.
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~~---~--~~~rlilvGD~~QLps 457 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAAL---P--DHARLLLVGDTDQLPS 457 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHhC---C--CCCEEEEECccccccC
Confidence 9999997661 23334444432 2 2567888887665443
No 473
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.51 E-value=0.03 Score=57.27 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=28.3
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCeeeEEecccc
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL 1020 (1116)
++|+|+||+|||++|+.|+..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 666676665433
No 474
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.50 E-value=0.093 Score=54.34 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.6
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
+++.|+||+|||++++.+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999999876 6666666655
No 475
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.50 E-value=0.14 Score=58.40 Aligned_cols=25 Identities=32% Similarity=0.639 Sum_probs=22.7
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
+.+||+||+| .++++||+|+|++..
T Consensus 37 ~~lll~Gp~G--tGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPG--SGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHhc
Confidence 3599999999 999999999999874
No 476
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.50 E-value=0.012 Score=63.28 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.3
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
|+|+||||+|||++|+.||..+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998877654
No 477
>PLN02200 adenylate kinase family protein
Probab=95.47 E-value=0.016 Score=63.77 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=29.4
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL 1020 (1116)
.+..|+|.|+||+|||++|+.||..+|+.. ++++++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdl 77 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDL 77 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHH
Confidence 346789999999999999999999998764 555444
No 478
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.11 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+...+.|.|++|+|||+|+++|+..+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33578999999999999999999876
No 479
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.013 Score=61.16 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=26.8
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
-|-+.||||||||++|+-||..+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999999987
No 480
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.1 Score=64.68 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=34.0
Q ss_pred CeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCC
Q 001244 705 PLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (1116)
Q Consensus 705 P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~ 747 (1116)
--|++|||+|. |. .+..|.|.+.|+..++.+++|..++.+
T Consensus 119 ~KVvIIDEah~-Lt--~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 119 YRIFIVDEAHM-VT--TAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred ceEEEEECCCc-CC--HHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 34999999999 53 568999999999999999999988843
No 481
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.44 E-value=0.025 Score=61.26 Aligned_cols=23 Identities=52% Similarity=0.696 Sum_probs=19.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
-+.+.||.|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999999766
No 482
>PRK06893 DNA replication initiation factor; Validated
Probab=95.41 E-value=0.076 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
.+-++|+||+| .+++.|+.|+|+++.
T Consensus 39 ~~~l~l~G~~G--~GKThL~~ai~~~~~ 64 (229)
T PRK06893 39 QPFFYIWGGKS--SGKSHLLKAVSNHYL 64 (229)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 46689999999 999999999999863
No 483
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.048 Score=61.53 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccc----c---cc---------ccchHHHHHHHHHHHhc-C
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----S---KW---------FGEGEKYVKAVFSLASK-I 1042 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~----s---k~---------~GesEk~Ir~lF~~A~k-~ 1042 (1116)
+...++|.||+|+|||++++.|+..+ +..+..+++.... . .| .......+...+..+.+ .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44689999999999999999999876 3444444442211 0 11 01233344555544433 2
Q ss_pred CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1043 sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
...+|+||-..+.. ... ..+.++...+....+ ...++|+-+|....++.. ++++|.
T Consensus 154 ~~D~ViIDt~Gr~~------~~~----~~l~el~~~~~~~~~--~~~~LVl~a~~~~~d~~~-~~~~f~ 209 (270)
T PRK06731 154 RVDYILIDTAGKNY------RAS----ETVEEMIETMGQVEP--DYICLTLSASMKSKDMIE-IITNFK 209 (270)
T ss_pred CCCEEEEECCCCCc------CCH----HHHHHHHHHHhhhCC--CeEEEEEcCccCHHHHHH-HHHHhC
Confidence 46899999987652 111 223334444433322 234667766655444333 455554
No 484
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.1 Score=61.45 Aligned_cols=98 Identities=21% Similarity=0.344 Sum_probs=70.1
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh--CCeeeEEeccccccc--------------cccchHHHHHHHHHHHhcCCCe
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPS 1045 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el--g~pfI~Is~seL~sk--------------~~GesEk~Ir~lF~~A~k~sPs 1045 (1116)
-|..-+||-|.||.||++|.-.+|..+ ..++++++..+-... ..=..|.++..+.+.+....|.
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~ 170 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPD 170 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCC
Confidence 344678899999999999888888776 337888887643211 1113566788899999999999
Q ss_pred EEEEccccccccCC--CCCchhHHHHHHHHHHHHHh
Q 001244 1046 VVFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNW 1079 (1116)
Q Consensus 1046 IIfIDEID~Llg~R--~~~~~~~~lr~IlneLL~~L 1079 (1116)
+++||-|..++... ..++.-...|..-++|+..-
T Consensus 171 lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 171 LVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred EEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 99999999998543 22344445677767776553
No 485
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.36 E-value=0.073 Score=55.06 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=42.3
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCC--eeeEEeccccc--------cccccc----h-HHHHHHHHHHHhcCCCeEE
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFGE----G-EKYVKAVFSLASKIAPSVV 1047 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~--pfI~Is~seL~--------sk~~Ge----s-Ek~Ir~lF~~A~k~sPsII 1047 (1116)
+...+.|.||+|+|||+|.+.|+..... --+.++...+. ...++. + -+.-+-.+..|--..|.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4467899999999999999999977511 11222221110 000110 0 1122334455556689999
Q ss_pred EEccccc
Q 001244 1048 FVDEVDS 1054 (1116)
Q Consensus 1048 fIDEID~ 1054 (1116)
++||--.
T Consensus 105 llDEP~~ 111 (163)
T cd03216 105 ILDEPTA 111 (163)
T ss_pred EEECCCc
Confidence 9999863
No 486
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.16 Score=61.83 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
..-|++|||+|. |. .+..|.|.+.|+.-++.+++|.+++.
T Consensus 116 ~~KVvIIDEah~-Ls--~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 116 KFKVYIIDEVHM-LS--NSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CceEEEEeChHh-CC--HHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 445999999998 54 46788999999999999999988873
No 487
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.22 Score=61.92 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=32.8
Q ss_pred eEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCC
Q 001244 706 LIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQL 747 (1116)
Q Consensus 706 ~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~ 747 (1116)
-|++|||+|. |. .+..|.|.+.||..++.+++|..++.+
T Consensus 121 KVvIIdev~~-Lt--~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 121 KIFIIDEVHM-LS--TNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred eEEEEEChhh-CC--HHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 4899999998 54 467889999999999999999888743
No 488
>PRK04040 adenylate kinase; Provisional
Probab=95.34 E-value=0.018 Score=61.28 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh--CCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el--g~pfI~I 1015 (1116)
+-|+++|+||+|||++++.++..+ ++.++..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 568999999999999999999999 6666544
No 489
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.33 E-value=0.071 Score=55.77 Aligned_cols=74 Identities=26% Similarity=0.446 Sum_probs=42.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh--C-----------CeeeEEeccccc-----------ccc-------c-c------
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA--G-----------ANFINISMSSIT-----------SKW-------F-G------ 1026 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el--g-----------~pfI~Is~seL~-----------sk~-------~-G------ 1026 (1116)
.-++|+||+|+|||+++..+|..+ | ..++.++...-. ..+ + .
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 458999999999999998888765 2 355556543210 000 0 0
Q ss_pred -----------chHHHHHHHHHHHhc-CCCeEEEEccccccccC
Q 001244 1027 -----------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 1027 -----------esEk~Ir~lF~~A~k-~sPsIIfIDEID~Llg~ 1058 (1116)
.....+.++.+.+.. ..+.+|+||.+..+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 011234456666666 57899999999999865
No 490
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.33 E-value=0.061 Score=57.36 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=42.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh-CCeeeEEecccccccccc------------------chHHHHHHHHHHHhcCC
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFG------------------EGEKYVKAVFSLASKIA 1043 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is~seL~sk~~G------------------esEk~Ir~lF~~A~k~s 1043 (1116)
.+.-++|.|+||+|||+++..+...+ +-.++.|+..++...... +......++++.+....
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~ 93 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENR 93 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34788999999999999999999998 888899988776443211 11123455666666666
Q ss_pred CeEEE
Q 001244 1044 PSVVF 1048 (1116)
Q Consensus 1044 PsIIf 1048 (1116)
..|||
T Consensus 94 ~nii~ 98 (199)
T PF06414_consen 94 YNIIF 98 (199)
T ss_dssp --EEE
T ss_pred CCEEE
Confidence 66664
No 491
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.32 E-value=0.097 Score=63.61 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=53.6
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc------ccc----------------------chHH
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEK 1030 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk------~~G----------------------esEk 1030 (1116)
.+...+|+.||||+|||+|+..++.+. |-+.++++..+-... .+| ..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 345689999999999999999988866 556666665432100 001 1145
Q ss_pred HHHHHHHHHhcCCCeEEEEccccccc
Q 001244 1031 YVKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1031 ~Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
.+..+.+.+....|.+|+||-|..+.
T Consensus 341 ~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 341 HLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 67777888888889999999998774
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.32 E-value=0.026 Score=64.59 Aligned_cols=69 Identities=23% Similarity=0.425 Sum_probs=46.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEe-cccccc---cc----c-----cchHHHHHHHHHHHhcCCCeEEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINIS-MSSITS---KW----F-----GEGEKYVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is-~seL~s---k~----~-----GesEk~Ir~lF~~A~k~sPsIIfI 1049 (1116)
.++++.||+|+|||+++++++..+. ...+.+. ..++.- .+ . +...-....++..+.+..|.+|++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~ 224 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIIL 224 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEE
Confidence 5899999999999999999998772 2222221 111110 00 0 111234567888888899999999
Q ss_pred cccc
Q 001244 1050 DEVD 1053 (1116)
Q Consensus 1050 DEID 1053 (1116)
||+-
T Consensus 225 gE~r 228 (308)
T TIGR02788 225 GELR 228 (308)
T ss_pred eccC
Confidence 9995
No 493
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.32 E-value=0.17 Score=56.23 Aligned_cols=114 Identities=14% Similarity=0.249 Sum_probs=64.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEeccccccccc---------c-----chHHH-------HHHHHHHHhc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWF---------G-----EGEKY-------VKAVFSLASK 1041 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~seL~sk~~---------G-----esEk~-------Ir~lF~~A~k 1041 (1116)
-++++.|++|+|||+++..|...+. +..+.+-++.....+. + +-+.. +.+.......
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4799999999999999999988773 3333333332211110 0 00111 1112111111
Q ss_pred ---CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcCCeE
Q 001244 1042 ---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1042 ---~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~r~I 1114 (1116)
.++.+|+||++..- ..-.+++..+.. .| +.-++.+|..+.....|++.++.-.+..+
T Consensus 94 ~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~--~g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGDK----------KLKSKILRQFFN--NG----RHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred cCCCCCeEEEEeCCCCc----------hhhhHHHHHHHh--cc----cccceEEEEEeeecccCCHHHhhcceEEE
Confidence 34679999997521 001233344432 11 34578899999888999999876555443
No 494
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.30 E-value=0.09 Score=59.49 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh----C-CeeeEEeccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 1019 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el----g-~pfI~Is~se 1019 (1116)
...++|.||+|+|||+++..||..+ | ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3578999999999999999998766 3 5555565544
No 495
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.29 E-value=0.013 Score=56.52 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEECCCCCchHHHHHHHHHHh
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el 1008 (1116)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 496
>PF14516 AAA_35: AAA-like domain
Probab=95.28 E-value=0.38 Score=55.76 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=31.4
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL 1020 (1116)
...+.|+||..+|||+|...+.+.+ |+..+.+++..+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 3579999999999999998888766 888888888764
No 497
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.23 E-value=0.1 Score=59.43 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=30.6
Q ss_pred CCCCCCCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEeccc
Q 001244 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1116)
Q Consensus 978 ~~l~~p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~se 1019 (1116)
+|+. ...-++|+||||+|||+++-.+|... +...++|+..+
T Consensus 90 GGi~-~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIE-TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4433 33567899999999999999998763 33778888655
No 498
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.20 E-value=0.056 Score=48.20 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=23.7
Q ss_pred EEEECCCCCchHHHHHHHHHHh-CCeeeEEe
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el-g~pfI~Is 1016 (1116)
+.+.|++|+|||++++++++.+ +..+..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999996 23344333
No 499
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.015 Score=61.26 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.5
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|+++|.||||||++++.|+ .+|+..+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 58999999999999999999 9999888765
No 500
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.19 E-value=0.026 Score=65.64 Aligned_cols=69 Identities=22% Similarity=0.434 Sum_probs=47.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCC--eeeEEe-cccccc-------c-c----ccchHHHHHHHHHHHhcCCCeEEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS-------K-W----FGEGEKYVKAVFSLASKIAPSVVFV 1049 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~--pfI~Is-~seL~s-------k-~----~GesEk~Ir~lF~~A~k~sPsIIfI 1049 (1116)
.+||+.||+|+|||+++++++..... .++.+. ..++.- . + .+...-....++..+.+..|..|++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Iiv 242 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILL 242 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEE
Confidence 58999999999999999999988732 233321 111110 0 0 0112234667888888999999999
Q ss_pred cccc
Q 001244 1050 DEVD 1053 (1116)
Q Consensus 1050 DEID 1053 (1116)
.|+-
T Consensus 243 GEiR 246 (344)
T PRK13851 243 GEMR 246 (344)
T ss_pred EeeC
Confidence 9984
Done!