Query 001244
Match_columns 1116
No_of_seqs 502 out of 2336
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.5E-52 5.2E-57 516.8 23.3 427 449-1116 199-645 (806)
2 1ypw_A Transitional endoplasmi 100.0 8.3E-35 2.8E-39 362.3 16.4 423 450-1116 200-645 (806)
3 4b4t_J 26S protease regulatory 100.0 3.5E-32 1.2E-36 312.8 19.2 170 944-1116 143-316 (405)
4 4b4t_I 26S protease regulatory 100.0 4E-31 1.4E-35 305.2 14.4 170 944-1116 177-350 (437)
5 4b4t_H 26S protease regulatory 100.0 1.8E-30 6.3E-35 302.1 18.3 170 944-1116 204-377 (467)
6 4b4t_M 26S protease regulatory 100.0 8.9E-31 3E-35 304.5 14.8 171 943-1116 175-349 (434)
7 4b4t_L 26S protease subunit RP 100.0 1.2E-30 4.1E-35 303.6 15.8 170 944-1116 176-349 (437)
8 4b4t_K 26S protease regulatory 100.0 2.5E-30 8.4E-35 300.5 17.2 170 944-1116 167-340 (428)
9 3cf2_A TER ATPase, transitiona 99.9 2.7E-27 9.3E-32 292.5 11.7 169 944-1116 199-369 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 99.9 4.7E-25 1.6E-29 247.2 20.0 169 944-1116 7-176 (322)
11 3eie_A Vacuolar protein sortin 99.9 1.4E-24 4.8E-29 242.5 15.5 170 943-1116 12-181 (322)
12 2qp9_X Vacuolar protein sortin 99.9 4.6E-24 1.6E-28 242.2 14.6 172 941-1116 43-214 (355)
13 4b4t_J 26S protease regulatory 99.9 2.8E-24 9.7E-29 247.3 12.0 230 449-907 143-389 (405)
14 2zan_A Vacuolar protein sortin 99.9 1.4E-23 4.7E-28 245.2 14.3 172 941-1116 126-298 (444)
15 4b4t_I 26S protease regulatory 99.9 6.8E-24 2.3E-28 245.2 9.9 232 447-907 175-423 (437)
16 3cf0_A Transitional endoplasmi 99.9 9.8E-24 3.4E-28 233.7 10.0 170 944-1116 10-183 (301)
17 2x8a_A Nuclear valosin-contain 99.9 9.3E-23 3.2E-27 224.0 14.8 168 945-1116 6-175 (274)
18 4b4t_H 26S protease regulatory 99.9 5.9E-23 2E-27 239.3 11.9 231 448-907 203-450 (467)
19 3d8b_A Fidgetin-like protein 1 99.9 2.7E-22 9.2E-27 227.6 16.9 170 944-1116 79-248 (357)
20 4b4t_L 26S protease subunit RP 99.9 4.8E-23 1.7E-27 239.9 10.0 232 447-906 174-421 (437)
21 3vfd_A Spastin; ATPase, microt 99.9 2.8E-22 9.6E-27 229.5 14.9 170 944-1116 110-279 (389)
22 3b9p_A CG5977-PA, isoform A; A 99.9 6.7E-22 2.3E-26 216.5 15.9 171 943-1116 15-186 (297)
23 4b4t_K 26S protease regulatory 99.9 2.3E-22 8E-27 233.7 12.2 215 447-882 165-397 (428)
24 3pxi_A Negative regulator of g 99.9 9.6E-21 3.3E-25 234.4 26.9 147 949-1116 491-659 (758)
25 4b4t_M 26S protease regulatory 99.9 6.9E-22 2.4E-26 230.0 15.4 216 446-882 173-405 (434)
26 1r6b_X CLPA protein; AAA+, N-t 99.9 2.3E-20 7.7E-25 230.8 27.7 328 689-1116 266-650 (758)
27 3h4m_A Proteasome-activating n 99.9 2.9E-21 1E-25 209.9 16.4 169 945-1116 13-185 (285)
28 2ce7_A Cell division protein F 99.9 2.1E-21 7.3E-26 228.6 16.5 170 943-1116 10-183 (476)
29 1lv7_A FTSH; alpha/beta domain 99.9 2.9E-21 1E-25 207.7 15.9 170 943-1116 6-179 (257)
30 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.7E-21 9.4E-26 206.8 14.6 168 945-1116 2-174 (262)
31 3hu3_A Transitional endoplasmi 99.8 2.1E-21 7.2E-26 229.6 13.8 168 945-1116 200-369 (489)
32 1qvr_A CLPB protein; coiled co 99.8 1.4E-18 4.9E-23 217.9 26.8 149 949-1114 558-752 (854)
33 2dhr_A FTSH; AAA+ protein, hex 99.8 1.7E-19 5.9E-24 213.6 14.3 169 944-1116 26-198 (499)
34 3t15_A Ribulose bisphosphate c 99.8 5.3E-20 1.8E-24 203.6 8.7 135 981-1115 33-183 (293)
35 2r62_A Cell division protease 99.8 3.3E-21 1.1E-25 208.0 -0.9 173 941-1116 3-180 (268)
36 1ixz_A ATP-dependent metallopr 99.8 9.2E-19 3.1E-23 187.9 15.5 171 942-1116 9-183 (254)
37 1ypw_A Transitional endoplasmi 99.8 1.6E-18 5.5E-23 216.2 13.1 168 945-1116 200-369 (806)
38 1iy2_A ATP-dependent metallopr 99.8 1.3E-17 4.5E-22 181.9 18.2 169 944-1116 35-207 (278)
39 1gxc_A CHK2, CDS1, serine/thre 99.7 1.8E-17 6.1E-22 167.0 13.7 108 132-240 28-145 (149)
40 2c9o_A RUVB-like 1; hexameric 99.7 2E-18 6.7E-23 202.1 1.5 158 945-1112 33-215 (456)
41 1lgp_A Cell cycle checkpoint p 99.7 7.1E-17 2.4E-21 155.7 10.5 105 132-239 2-114 (116)
42 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.1E-16 3.8E-21 179.3 12.5 218 447-883 5-234 (322)
43 2qp9_X Vacuolar protein sortin 99.6 1.4E-15 4.7E-20 172.7 14.0 229 435-883 33-272 (355)
44 3eie_A Vacuolar protein sortin 99.6 6.1E-16 2.1E-20 172.7 9.7 219 447-884 11-240 (322)
45 2zan_A Vacuolar protein sortin 99.6 4.1E-15 1.4E-19 173.8 13.9 229 435-883 116-356 (444)
46 3syl_A Protein CBBX; photosynt 99.6 1.8E-15 6.2E-20 166.0 10.3 155 950-1115 32-200 (309)
47 1g41_A Heat shock protein HSLU 99.6 4.3E-16 1.5E-20 181.8 5.5 155 950-1116 16-175 (444)
48 1d2n_A N-ethylmaleimide-sensit 99.6 2.9E-15 1E-19 162.4 10.6 132 982-1116 62-195 (272)
49 1ofh_A ATP-dependent HSL prote 99.6 4.1E-15 1.4E-19 162.2 11.2 167 950-1116 16-199 (310)
50 3hu3_A Transitional endoplasmi 99.6 1.5E-14 5.2E-19 171.1 14.2 269 450-957 200-485 (489)
51 2p65_A Hypothetical protein PF 99.5 1.2E-14 4.1E-19 145.6 10.0 145 947-1116 20-183 (187)
52 2x8a_A Nuclear valosin-contain 99.5 1.4E-14 4.9E-19 159.0 11.4 219 449-884 5-238 (274)
53 3cf0_A Transitional endoplasmi 99.5 4E-14 1.4E-18 156.7 14.1 215 448-883 9-240 (301)
54 3hws_A ATP-dependent CLP prote 99.5 8.1E-15 2.8E-19 165.9 8.5 131 951-1081 17-156 (363)
55 1jbk_A CLPB protein; beta barr 99.5 4.6E-14 1.6E-18 141.1 11.8 145 946-1115 19-181 (195)
56 2jqj_A DNA damage response pro 99.5 1E-13 3.4E-18 140.0 13.0 109 127-239 11-125 (151)
57 1g6g_A Protein kinase RAD53; b 99.5 1E-13 3.4E-18 136.0 12.6 100 132-235 3-119 (127)
58 3h4m_A Proteasome-activating n 99.5 2.6E-13 8.9E-18 147.4 16.7 232 448-908 11-259 (285)
59 2ce7_A Cell division protein F 99.5 4.5E-14 1.5E-18 166.5 11.5 237 442-907 3-256 (476)
60 3b9p_A CG5977-PA, isoform A; A 99.5 4.3E-13 1.5E-17 146.6 17.0 228 436-883 4-244 (297)
61 3i6u_A CDS1, serine/threonine- 99.5 1.4E-13 4.9E-18 158.5 12.6 109 131-240 7-125 (419)
62 3pfi_A Holliday junction ATP-d 99.5 5.2E-13 1.8E-17 148.7 16.4 142 946-1116 26-181 (338)
63 3m6a_A ATP-dependent protease 99.5 6.6E-14 2.3E-18 167.6 9.5 150 948-1115 80-249 (543)
64 3d8b_A Fidgetin-like protein 1 99.5 9.1E-13 3.1E-17 149.4 18.4 225 438-882 69-305 (357)
65 1lv7_A FTSH; alpha/beta domain 99.5 1.9E-12 6.6E-17 139.0 19.9 233 445-907 3-252 (257)
66 3vfd_A Spastin; ATPase, microt 99.5 6.1E-13 2.1E-17 152.2 16.6 229 435-883 97-337 (389)
67 2qz4_A Paraplegin; AAA+, SPG7, 99.4 1.5E-12 5.1E-17 139.0 17.4 231 450-908 2-250 (262)
68 1um8_A ATP-dependent CLP prote 99.4 2.1E-13 7.2E-18 154.9 10.7 162 950-1112 22-224 (376)
69 3uk6_A RUVB-like 2; hexameric 99.4 2.4E-12 8.1E-17 144.6 13.4 143 945-1112 40-253 (368)
70 4h87_A Kanadaptin; FHA domain 99.3 2.6E-12 8.8E-17 126.8 10.6 87 146-234 34-129 (130)
71 2r62_A Cell division protease 99.3 7.9E-13 2.7E-17 142.5 7.6 76 444-527 1-77 (268)
72 1hqc_A RUVB; extended AAA-ATPa 99.3 3E-12 1E-16 141.1 11.5 144 945-1116 8-165 (324)
73 2dhr_A FTSH; AAA+ protein, hex 99.3 1.1E-11 3.9E-16 146.9 16.4 136 703-908 122-272 (499)
74 3u61_B DNA polymerase accessor 99.3 4.9E-12 1.7E-16 140.2 12.2 135 945-1115 22-161 (324)
75 1r6b_X CLPA protein; AAA+, N-t 99.3 3.3E-12 1.1E-16 158.0 11.0 145 947-1115 184-345 (758)
76 2pie_A E3 ubiquitin-protein li 99.3 7E-12 2.4E-16 124.7 11.2 103 131-238 7-119 (138)
77 1qvr_A CLPB protein; coiled co 99.3 2.4E-12 8.1E-17 161.7 9.6 145 946-1115 167-328 (854)
78 4fcw_A Chaperone protein CLPB; 99.3 1.6E-11 5.3E-16 134.6 14.9 149 950-1115 18-212 (311)
79 1g3g_A Protien kinase SPK1; FH 99.3 1.8E-11 6.1E-16 125.3 14.0 103 130-236 29-148 (164)
80 2chg_A Replication factor C sm 99.3 3.9E-11 1.3E-15 122.6 16.0 134 945-1115 13-157 (226)
81 3n70_A Transport activator; si 99.3 7E-12 2.4E-16 124.1 9.6 123 950-1110 2-134 (145)
82 3pxg_A Negative regulator of g 99.3 4.4E-12 1.5E-16 149.1 9.0 131 946-1116 177-322 (468)
83 1l8q_A Chromosomal replication 99.3 1.6E-11 5.4E-16 136.4 12.9 142 945-1111 7-157 (324)
84 1g8p_A Magnesium-chelatase 38 99.3 4.1E-12 1.4E-16 141.4 7.8 144 945-1116 20-215 (350)
85 3pvs_A Replication-associated 99.3 1.6E-11 5.6E-16 143.7 12.3 127 946-1111 23-158 (447)
86 3va4_A Mediator of DNA damage 99.2 2.4E-11 8.3E-16 120.2 11.4 102 129-236 19-126 (132)
87 3cmw_A Protein RECA, recombina 99.2 6.6E-12 2.2E-16 165.2 9.4 154 942-1099 1013-1218(1706)
88 3co5_A Putative two-component 99.2 3.7E-12 1.3E-16 126.0 5.4 125 950-1112 5-134 (143)
89 3pxi_A Negative regulator of g 99.2 1.1E-11 3.7E-16 153.7 9.4 131 946-1116 177-322 (758)
90 2v1u_A Cell division control p 99.2 4.8E-11 1.6E-15 133.5 13.8 146 948-1112 18-193 (387)
91 2qby_B CDC6 homolog 3, cell di 99.2 6.3E-11 2.1E-15 133.2 14.0 140 949-1115 20-193 (384)
92 1qu5_A Protein kinase SPK1; FH 99.2 2.4E-11 8.1E-16 126.4 9.5 101 133-234 28-145 (182)
93 3te6_A Regulatory protein SIR3 99.2 7.7E-11 2.6E-15 132.4 13.3 140 951-1115 22-194 (318)
94 1sxj_A Activator 1 95 kDa subu 99.2 2.8E-11 9.6E-16 143.8 9.9 113 945-1057 35-162 (516)
95 1uht_A Expressed protein; FHA 99.2 6.9E-11 2.4E-15 114.2 10.7 94 129-227 7-105 (118)
96 2bjv_A PSP operon transcriptio 99.2 3.1E-11 1.1E-15 130.1 9.2 140 946-1112 3-171 (265)
97 2r44_A Uncharacterized protein 99.2 1.1E-11 3.8E-16 137.9 5.8 139 948-1116 26-182 (331)
98 1ixz_A ATP-dependent metallopr 99.2 4.4E-10 1.5E-14 120.4 17.0 127 690-881 97-238 (254)
99 1njg_A DNA polymerase III subu 99.2 3.9E-10 1.3E-14 116.2 15.7 130 946-1110 20-177 (250)
100 1dmz_A Protein (protein kinase 99.1 1.2E-10 4.1E-15 118.5 11.0 100 134-234 5-121 (158)
101 3po8_A RV0020C protein, putati 99.1 2.5E-10 8.4E-15 107.2 11.3 74 144-225 15-89 (100)
102 3hx1_A SLR1951 protein; P74513 99.1 1.5E-10 5.3E-15 114.2 10.3 91 133-227 10-108 (131)
103 2z4s_A Chromosomal replication 99.1 1.6E-10 5.5E-15 134.9 12.2 142 945-1111 101-253 (440)
104 2chq_A Replication factor C sm 99.1 1.6E-10 5.6E-15 126.1 10.8 135 945-1111 13-154 (319)
105 1r21_A Antigen KI-67; beta san 99.1 1.5E-10 5.1E-15 113.5 9.3 96 131-236 9-108 (128)
106 1sxj_D Activator 1 41 kDa subu 99.1 1.7E-10 5.7E-15 128.3 11.0 131 945-1111 33-185 (353)
107 3els_A PRE-mRNA leakage protei 99.1 1.9E-10 6.5E-15 117.1 10.1 88 146-234 49-156 (158)
108 1ojl_A Transcriptional regulat 99.1 6.6E-11 2.3E-15 131.6 7.2 135 950-1111 3-166 (304)
109 2qby_A CDC6 homolog 1, cell di 99.1 4.1E-10 1.4E-14 125.7 13.4 145 947-1112 18-189 (386)
110 2xt9_B Putative signal transdu 99.1 5.7E-10 1.9E-14 107.5 12.3 85 142-237 21-106 (115)
111 3t15_A Ribulose bisphosphate c 99.1 1.8E-10 6.1E-15 127.3 9.6 38 491-530 35-72 (293)
112 1iqp_A RFCS; clamp loader, ext 99.1 5.5E-10 1.9E-14 122.4 13.4 135 945-1111 21-162 (327)
113 1sxj_B Activator 1 37 kDa subu 99.1 4.8E-10 1.6E-14 122.6 12.7 131 945-1111 17-159 (323)
114 2csw_A Ubiquitin ligase protei 99.1 1.5E-10 5E-15 116.1 7.9 100 132-236 16-125 (145)
115 1iy2_A ATP-dependent metallopr 99.1 2.4E-09 8.3E-14 116.6 16.9 126 690-881 121-262 (278)
116 2kb3_A Oxoglutarate dehydrogen 99.0 8.4E-10 2.9E-14 110.6 11.9 83 144-237 58-141 (143)
117 3nbx_X ATPase RAVA; AAA+ ATPas 99.0 1.2E-10 4E-15 138.3 6.4 137 950-1116 23-179 (500)
118 2c9o_A RUVB-like 1; hexameric 99.0 5.8E-11 2E-15 139.0 3.8 70 449-532 32-103 (456)
119 2jpe_A Nuclear inhibitor of pr 99.0 1.2E-10 4.2E-15 115.9 5.5 85 146-234 48-135 (140)
120 3bos_A Putative DNA replicatio 99.0 1.4E-09 4.8E-14 113.4 13.6 135 945-1115 24-170 (242)
121 1fnn_A CDC6P, cell division co 99.0 2.4E-09 8.3E-14 120.1 16.4 146 948-1115 16-189 (389)
122 1mzk_A Kinase associated prote 99.0 4.5E-10 1.5E-14 111.8 9.0 79 153-237 33-120 (139)
123 1g41_A Heat shock protein HSLU 99.0 2.2E-09 7.4E-14 125.6 15.9 68 462-532 21-88 (444)
124 1jr3_A DNA polymerase III subu 99.0 1.7E-09 5.8E-14 121.1 14.3 131 945-1110 12-170 (373)
125 2kfu_A RV1827 PThr 22; FHA dom 99.0 1.8E-09 6.2E-14 110.3 12.2 83 144-237 67-150 (162)
126 3f9v_A Minichromosome maintena 99.0 5E-11 1.7E-15 144.3 -1.1 147 950-1114 296-472 (595)
127 3elv_A PRE-mRNA leakage protei 99.0 1.5E-09 5E-14 114.4 10.1 82 145-227 95-193 (205)
128 3gqs_A Adenylate cyclase-like 98.9 3.3E-09 1.1E-13 100.6 10.8 81 146-235 18-101 (106)
129 4ejq_A Kinesin-like protein KI 98.9 3.3E-09 1.1E-13 107.5 11.1 95 136-235 40-143 (154)
130 3oun_A Putative uncharacterize 98.9 3E-09 1E-13 108.1 10.3 73 145-225 78-151 (157)
131 1sxj_E Activator 1 40 kDa subu 98.9 6.6E-09 2.3E-13 116.0 13.3 133 945-1110 10-185 (354)
132 1wln_A Afadin; beta sandwich, 98.9 5.2E-09 1.8E-13 101.6 10.7 80 147-235 31-113 (120)
133 1sxj_C Activator 1 40 kDa subu 98.9 5.4E-09 1.8E-13 117.1 11.9 131 945-1111 21-162 (340)
134 3ec2_A DNA replication protein 98.9 2E-09 6.9E-14 109.4 7.6 70 984-1055 38-112 (180)
135 2ff4_A Probable regulatory pro 98.9 7.7E-09 2.6E-13 118.8 12.7 95 130-235 285-380 (388)
136 1in4_A RUVB, holliday junction 98.9 1.8E-08 6E-13 113.2 15.2 143 946-1114 22-175 (334)
137 3fm8_A Kinesin-like protein KI 98.8 2.6E-08 8.9E-13 97.6 11.8 99 128-234 22-122 (124)
138 1a5t_A Delta prime, HOLB; zinc 98.8 5.6E-08 1.9E-12 109.1 16.3 126 954-1111 7-160 (334)
139 3cmw_A Protein RECA, recombina 98.8 2.9E-08 9.9E-13 131.2 15.8 77 984-1060 1431-1526(1706)
140 2gno_A DNA polymerase III, gam 98.8 3.8E-08 1.3E-12 109.8 14.3 122 953-1109 1-132 (305)
141 2w58_A DNAI, primosome compone 98.7 2.1E-08 7.2E-13 103.3 9.2 108 936-1055 12-127 (202)
142 3uv0_A Mutator 2, isoform B; F 98.7 4.2E-08 1.4E-12 91.8 10.2 70 143-220 11-81 (102)
143 1ny5_A Transcriptional regulat 98.7 1.2E-09 4.1E-14 125.5 -2.1 129 950-1098 138-281 (387)
144 2kjq_A DNAA-related protein; s 98.7 1.3E-07 4.4E-12 94.7 12.4 101 985-1114 37-143 (149)
145 3k1j_A LON protease, ATP-depen 98.7 1.4E-08 4.6E-13 123.1 6.0 49 945-1009 37-85 (604)
146 2brf_A Bifunctional polynucleo 98.6 1.4E-07 4.8E-12 90.3 10.4 95 134-234 9-105 (110)
147 3kt9_A Aprataxin; FHA domain, 98.6 1.9E-07 6.6E-12 88.4 11.2 95 134-234 4-99 (102)
148 1yj5_C 5' polynucleotide kinas 98.6 2.5E-07 8.6E-12 91.8 11.0 97 133-235 8-106 (143)
149 4akg_A Glutathione S-transfera 98.5 2.4E-07 8.2E-12 127.3 13.0 121 985-1116 1268-1415(2695)
150 2vhj_A Ntpase P4, P4; non- hyd 98.5 5E-08 1.7E-12 109.7 5.2 113 985-1106 124-242 (331)
151 3dzd_A Transcriptional regulat 98.5 7.8E-09 2.7E-13 118.1 -1.3 92 949-1055 129-234 (368)
152 1w5s_A Origin recognition comp 98.5 4.5E-07 1.6E-11 102.6 12.2 153 948-1115 21-211 (412)
153 2qgz_A Helicase loader, putati 98.4 9.2E-08 3.1E-12 106.7 4.6 70 984-1055 152-226 (308)
154 3syl_A Protein CBBX; photosynt 98.4 6.6E-07 2.3E-11 97.9 11.0 83 704-824 130-218 (309)
155 1ujx_A Polynucleotide kinase 3 98.4 3.6E-07 1.2E-11 88.6 6.9 96 133-234 15-112 (119)
156 2r2a_A Uncharacterized protein 98.3 5.7E-07 2E-11 94.6 6.1 120 985-1115 6-149 (199)
157 3f8t_A Predicted ATPase involv 98.3 4.4E-07 1.5E-11 106.4 5.2 145 951-1115 215-376 (506)
158 4egx_A Kinesin-like protein KI 98.2 4.3E-06 1.5E-10 87.1 11.1 95 136-235 70-173 (184)
159 1d2n_A N-ethylmaleimide-sensit 98.2 3E-06 1E-10 91.6 10.3 37 490-528 62-98 (272)
160 3uk6_A RUVB-like 2; hexameric 98.2 1.8E-05 6.1E-10 88.7 16.9 142 704-907 189-330 (368)
161 3hws_A ATP-dependent CLP prote 98.2 4.3E-06 1.5E-10 94.5 11.5 68 462-531 21-88 (363)
162 1ofh_A ATP-dependent HSL prote 98.2 2.3E-06 7.8E-11 93.1 7.6 69 461-532 20-88 (310)
163 3m6a_A ATP-dependent protease 98.1 3E-06 1E-10 101.5 9.1 35 491-527 107-141 (543)
164 1jbk_A CLPB protein; beta barr 98.1 1.6E-05 5.4E-10 78.9 11.1 54 689-746 102-160 (195)
165 1um8_A ATP-dependent CLP prote 98.0 8.8E-06 3E-10 92.2 8.8 67 462-530 27-108 (376)
166 3cmu_A Protein RECA, recombina 98.0 1.1E-05 3.7E-10 108.2 10.0 114 981-1096 1424-1561(2050)
167 4akg_A Glutathione S-transfera 98.0 2.4E-05 8.1E-10 108.0 13.0 116 985-1112 646-774 (2695)
168 3huf_A DNA repair and telomere 97.9 2.9E-05 9.8E-10 86.4 9.7 81 146-228 15-107 (325)
169 1tue_A Replication protein E1; 97.9 1.4E-05 4.7E-10 84.8 6.7 30 985-1014 59-88 (212)
170 3pxg_A Negative regulator of g 97.9 2.7E-05 9.4E-10 91.5 10.0 80 690-820 256-335 (468)
171 2r44_A Uncharacterized protein 97.9 0.00023 7.8E-09 78.9 16.4 33 493-527 47-79 (331)
172 1sxj_A Activator 1 95 kDa subu 97.8 0.00016 5.5E-09 85.9 16.1 77 452-532 37-115 (516)
173 2v1u_A Cell division control p 97.8 0.00082 2.8E-08 74.8 19.7 94 689-824 117-215 (387)
174 3pfi_A Holliday junction ATP-d 97.8 0.00031 1.1E-08 77.9 16.0 62 452-527 27-88 (338)
175 3u61_B DNA polymerase accessor 97.8 0.00018 6.1E-09 79.4 13.9 58 452-527 24-81 (324)
176 2p65_A Hypothetical protein PF 97.7 6.1E-05 2.1E-09 74.8 8.6 54 689-746 102-161 (187)
177 2fna_A Conserved hypothetical 97.7 0.00015 5.2E-09 79.7 12.5 56 946-1019 10-65 (357)
178 2qen_A Walker-type ATPase; unk 97.7 0.00051 1.7E-08 75.4 15.1 54 947-1018 10-63 (350)
179 4a0e_A YSCD, type III secretio 97.6 9.5E-05 3.3E-09 72.1 8.0 76 143-226 15-91 (123)
180 1hqc_A RUVB; extended AAA-ATPa 97.6 0.00046 1.6E-08 75.7 14.6 34 491-526 37-70 (324)
181 2chg_A Replication factor C sm 97.6 0.0013 4.6E-08 66.5 16.3 41 703-746 101-141 (226)
182 1wv3_A Similar to DNA segregat 97.6 8.7E-05 3E-09 80.2 7.7 67 149-223 89-159 (238)
183 1ye8_A Protein THEP1, hypothet 97.6 0.00041 1.4E-08 71.2 12.2 28 986-1013 2-29 (178)
184 1u0j_A DNA replication protein 97.5 6E-05 2.1E-09 82.7 5.6 27 984-1010 104-130 (267)
185 4fcw_A Chaperone protein CLPB; 97.5 0.0003 1E-08 76.7 10.2 37 493-531 48-87 (311)
186 3vkg_A Dynein heavy chain, cyt 97.4 0.00024 8E-09 99.1 10.7 118 985-1112 1305-1450(3245)
187 1g8p_A Magnesium-chelatase 38 97.4 0.00028 9.5E-09 78.2 9.3 52 450-520 20-71 (350)
188 1svm_A Large T antigen; AAA+ f 97.4 6.5E-05 2.2E-09 86.3 4.2 105 982-1108 167-272 (377)
189 2z4s_A Chromosomal replication 97.4 0.00026 8.9E-09 82.6 8.9 34 492-527 130-168 (440)
190 2qby_A CDC6 homolog 1, cell di 97.3 0.0059 2E-07 67.7 18.3 56 689-746 115-172 (386)
191 2cvh_A DNA repair and recombin 97.3 0.0011 3.9E-08 68.1 11.5 38 982-1019 18-55 (220)
192 3kw6_A 26S protease regulatory 97.3 9.7E-05 3.3E-09 65.9 2.9 73 826-908 1-74 (78)
193 1xp8_A RECA protein, recombina 97.2 0.00092 3.1E-08 76.5 10.9 76 982-1057 72-166 (366)
194 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0012 4.1E-08 68.2 10.5 35 983-1017 22-59 (235)
195 3nbx_X ATPase RAVA; AAA+ ATPas 97.2 0.00096 3.3E-08 79.3 10.8 57 430-520 11-67 (500)
196 3te6_A Regulatory protein SIR3 97.2 0.0031 1.1E-07 70.8 14.0 93 689-823 118-211 (318)
197 1njg_A DNA polymerase III subu 97.2 0.0025 8.5E-08 65.1 12.1 54 690-746 111-165 (250)
198 3hr8_A Protein RECA; alpha and 97.2 0.0012 4.2E-08 75.2 10.7 77 981-1057 58-153 (356)
199 3bos_A Putative DNA replicatio 97.1 0.0022 7.7E-08 66.3 11.4 27 491-519 51-77 (242)
200 1n0w_A DNA repair protein RAD5 97.1 0.0015 5.2E-08 68.2 10.1 76 983-1058 23-134 (243)
201 2krk_A 26S protease regulatory 97.1 0.00025 8.6E-09 64.9 3.5 69 828-906 11-80 (86)
202 3pvs_A Replication-associated 97.1 0.0019 6.3E-08 75.8 11.8 32 493-526 51-82 (447)
203 2zr9_A Protein RECA, recombina 97.1 0.0018 6.1E-08 73.5 10.9 76 982-1057 59-153 (349)
204 2qby_B CDC6 homolog 3, cell di 97.0 0.002 6.8E-08 72.1 10.7 38 491-530 44-92 (384)
205 3cmu_A Protein RECA, recombina 97.0 0.00091 3.1E-08 90.1 8.8 115 981-1097 729-867 (2050)
206 1l8q_A Chromosomal replication 97.0 0.00089 3E-08 74.0 7.4 35 491-527 36-73 (324)
207 3vkg_A Dynein heavy chain, cyt 97.0 0.0017 5.8E-08 90.8 11.6 113 985-1112 605-734 (3245)
208 2chq_A Replication factor C sm 97.0 0.0035 1.2E-07 68.0 11.5 73 703-822 101-173 (319)
209 1qhx_A CPT, protein (chloramph 96.9 0.0015 5.3E-08 65.2 7.4 34 985-1018 4-37 (178)
210 1sxj_B Activator 1 37 kDa subu 96.9 0.0073 2.5E-07 65.6 13.0 40 704-746 107-146 (323)
211 2orw_A Thymidine kinase; TMTK, 96.7 0.0013 4.3E-08 67.9 5.6 30 986-1015 5-37 (184)
212 2z43_A DNA repair and recombin 96.7 0.0023 7.9E-08 71.4 8.1 75 983-1057 106-217 (324)
213 1u94_A RECA protein, recombina 96.7 0.0018 6.2E-08 73.7 7.3 76 982-1057 61-155 (356)
214 3trf_A Shikimate kinase, SK; a 96.7 0.00082 2.8E-08 67.8 4.0 32 985-1016 6-37 (185)
215 1v5w_A DMC1, meiotic recombina 96.7 0.0039 1.3E-07 70.3 9.7 76 982-1057 120-233 (343)
216 3upu_A ATP-dependent DNA helic 96.7 0.013 4.3E-07 68.5 13.8 23 986-1008 47-69 (459)
217 1iqp_A RFCS; clamp loader, ext 96.6 0.008 2.7E-07 65.4 10.9 41 703-746 109-149 (327)
218 2ehv_A Hypothetical protein PH 96.6 0.0048 1.6E-07 64.7 8.6 23 983-1005 29-51 (251)
219 2dr3_A UPF0273 protein PH0284; 96.6 0.0083 2.8E-07 62.7 10.4 35 983-1017 22-59 (247)
220 3vaa_A Shikimate kinase, SK; s 96.6 0.0013 4.5E-08 67.7 4.2 34 983-1016 24-57 (199)
221 1sxj_D Activator 1 41 kDa subu 96.5 0.022 7.4E-07 62.9 13.9 72 704-822 133-204 (353)
222 1jr3_A DNA polymerase III subu 96.5 0.014 4.9E-07 64.8 12.4 53 691-746 105-158 (373)
223 3aji_B S6C, proteasome (prosom 96.5 0.0026 8.9E-08 57.1 5.0 52 830-883 3-55 (83)
224 1fnn_A CDC6P, cell division co 96.4 0.019 6.4E-07 64.1 12.9 53 689-746 112-168 (389)
225 3kb2_A SPBC2 prophage-derived 96.4 0.0018 6.3E-08 63.9 4.2 31 986-1016 3-33 (173)
226 3jvv_A Twitching mobility prot 96.4 0.011 3.7E-07 67.4 10.7 69 985-1053 124-206 (356)
227 3vlf_B 26S protease regulatory 96.4 0.0017 5.8E-08 59.4 3.2 68 830-907 3-71 (88)
228 4a74_A DNA repair and recombin 96.4 0.0084 2.9E-07 61.9 9.0 27 982-1008 23-49 (231)
229 3f9v_A Minichromosome maintena 96.4 0.0077 2.6E-07 73.0 9.9 55 461-521 300-354 (595)
230 3io5_A Recombination and repai 96.4 0.0097 3.3E-07 67.0 9.8 72 986-1057 30-125 (333)
231 2b8t_A Thymidine kinase; deoxy 96.3 0.017 5.7E-07 61.7 11.2 71 984-1055 12-101 (223)
232 3lda_A DNA repair protein RAD5 96.3 0.0074 2.5E-07 69.8 9.1 77 982-1058 176-288 (400)
233 1via_A Shikimate kinase; struc 96.3 0.002 6.8E-08 64.7 3.8 31 986-1016 6-36 (175)
234 3iij_A Coilin-interacting nucl 96.3 0.0022 7.5E-08 64.6 4.0 32 985-1016 12-43 (180)
235 3dm5_A SRP54, signal recogniti 96.3 0.028 9.5E-07 65.9 13.8 73 983-1055 99-194 (443)
236 1zuh_A Shikimate kinase; alpha 96.3 0.0023 7.7E-08 63.7 3.9 32 985-1016 8-39 (168)
237 2iyv_A Shikimate kinase, SK; t 96.2 0.0022 7.5E-08 64.7 3.6 31 986-1016 4-34 (184)
238 3bh0_A DNAB-like replicative h 96.2 0.058 2E-06 59.9 15.4 37 981-1017 65-104 (315)
239 2rhm_A Putative kinase; P-loop 96.2 0.0026 9.1E-08 64.1 4.0 33 984-1016 5-37 (193)
240 1a5t_A Delta prime, HOLB; zinc 96.2 0.026 9E-07 63.0 12.5 55 689-746 92-147 (334)
241 1sxj_E Activator 1 40 kDa subu 96.2 0.06 2.1E-06 59.6 15.3 74 703-823 133-206 (354)
242 1y63_A LMAJ004144AAA protein; 96.2 0.0026 8.9E-08 64.8 3.8 32 985-1016 11-43 (184)
243 2p5t_B PEZT; postsegregational 96.2 0.017 5.8E-07 62.0 10.4 38 983-1020 31-68 (253)
244 1gvn_B Zeta; postsegregational 96.2 0.015 5.3E-07 63.9 10.2 36 984-1019 33-68 (287)
245 2i1q_A DNA repair and recombin 96.2 0.0068 2.3E-07 67.2 7.3 76 982-1057 96-218 (322)
246 1aky_A Adenylate kinase; ATP:A 96.1 0.0032 1.1E-07 65.7 4.3 32 984-1015 4-35 (220)
247 1tev_A UMP-CMP kinase; ploop, 96.1 0.0033 1.1E-07 63.2 4.3 31 985-1015 4-34 (196)
248 3lw7_A Adenylate kinase relate 96.1 0.0028 9.5E-08 62.1 3.6 29 986-1015 3-31 (179)
249 2i3b_A HCR-ntpase, human cance 96.1 0.003 1E-07 65.6 4.0 23 986-1008 3-25 (189)
250 2cdn_A Adenylate kinase; phosp 96.1 0.0034 1.2E-07 64.4 4.4 31 985-1015 21-51 (201)
251 1pzn_A RAD51, DNA repair and r 96.1 0.017 5.7E-07 65.4 10.4 38 982-1019 129-175 (349)
252 1vma_A Cell division protein F 96.1 0.061 2.1E-06 60.0 14.5 72 983-1054 103-197 (306)
253 1e6c_A Shikimate kinase; phosp 96.1 0.0032 1.1E-07 62.5 3.8 31 986-1016 4-34 (173)
254 1nlf_A Regulatory protein REPA 96.1 0.022 7.4E-07 61.8 10.6 26 983-1008 29-54 (279)
255 2ze6_A Isopentenyl transferase 96.1 0.0036 1.2E-07 67.5 4.3 32 986-1017 3-34 (253)
256 2c95_A Adenylate kinase 1; tra 96.1 0.0036 1.2E-07 63.3 4.1 32 985-1016 10-41 (196)
257 2r8r_A Sensor protein; KDPD, P 96.0 0.0084 2.9E-07 64.4 7.0 33 985-1017 7-42 (228)
258 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.01 3.6E-07 63.9 7.9 36 985-1020 5-43 (260)
259 3e1s_A Exodeoxyribonuclease V, 96.0 0.0033 1.1E-07 75.9 4.3 31 985-1015 205-238 (574)
260 1kag_A SKI, shikimate kinase I 96.0 0.0044 1.5E-07 61.6 4.5 30 985-1014 5-34 (173)
261 2pt5_A Shikimate kinase, SK; a 96.0 0.004 1.4E-07 61.6 3.9 31 986-1016 2-32 (168)
262 3dl0_A Adenylate kinase; phosp 95.9 0.0039 1.3E-07 64.6 3.8 30 986-1015 2-31 (216)
263 3cm0_A Adenylate kinase; ATP-b 95.9 0.0054 1.8E-07 61.7 4.6 31 985-1015 5-35 (186)
264 2gno_A DNA polymerase III, gam 95.9 0.042 1.4E-06 61.1 12.1 86 689-823 66-152 (305)
265 2zts_A Putative uncharacterize 95.9 0.03 1E-06 58.4 10.4 76 982-1057 28-149 (251)
266 1ak2_A Adenylate kinase isoenz 95.9 0.005 1.7E-07 65.0 4.4 31 985-1015 17-47 (233)
267 2bwj_A Adenylate kinase 5; pho 95.9 0.0044 1.5E-07 62.8 3.8 31 985-1015 13-43 (199)
268 3fb4_A Adenylate kinase; psych 95.9 0.0044 1.5E-07 64.1 3.9 30 986-1015 2-31 (216)
269 1kht_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 62.5 3.4 31 985-1015 4-39 (192)
270 1z6t_A APAF-1, apoptotic prote 95.9 0.05 1.7E-06 64.8 13.4 47 948-1006 123-169 (591)
271 1g5t_A COB(I)alamin adenosyltr 95.9 0.05 1.7E-06 57.1 11.7 111 985-1111 29-172 (196)
272 1qf9_A UMP/CMP kinase, protein 95.9 0.0047 1.6E-07 61.9 3.9 31 985-1015 7-37 (194)
273 2r6a_A DNAB helicase, replicat 95.8 0.038 1.3E-06 64.5 11.9 36 982-1017 201-240 (454)
274 2dzn_B 26S protease regulatory 95.8 0.004 1.4E-07 56.0 2.9 49 832-882 2-51 (82)
275 2fz4_A DNA repair protein RAD2 95.8 0.013 4.5E-07 62.4 7.3 33 986-1018 110-142 (237)
276 2q6t_A DNAB replication FORK h 95.8 0.043 1.5E-06 63.8 12.3 37 981-1017 197-237 (444)
277 1ukz_A Uridylate kinase; trans 95.8 0.0059 2E-07 62.5 4.4 33 984-1016 15-47 (203)
278 2vli_A Antibiotic resistance p 95.8 0.0047 1.6E-07 61.9 3.5 29 985-1013 6-34 (183)
279 1ly1_A Polynucleotide kinase; 95.8 0.0052 1.8E-07 61.1 3.8 30 985-1014 3-33 (181)
280 3t61_A Gluconokinase; PSI-biol 95.8 0.0052 1.8E-07 63.1 3.9 32 985-1016 19-50 (202)
281 1zd8_A GTP:AMP phosphotransfer 95.8 0.0047 1.6E-07 64.8 3.6 31 985-1015 8-38 (227)
282 2iut_A DNA translocase FTSK; n 95.8 0.054 1.9E-06 65.3 13.2 61 1044-1115 344-406 (574)
283 3tlx_A Adenylate kinase 2; str 95.8 0.0061 2.1E-07 65.1 4.6 33 983-1015 28-60 (243)
284 3be4_A Adenylate kinase; malar 95.7 0.0047 1.6E-07 64.5 3.5 31 985-1015 6-36 (217)
285 1knq_A Gluconate kinase; ALFA/ 95.7 0.0081 2.8E-07 60.0 4.8 32 984-1015 8-39 (175)
286 1cr0_A DNA primase/helicase; R 95.6 0.044 1.5E-06 59.7 10.6 34 983-1016 34-71 (296)
287 3kl4_A SRP54, signal recogniti 95.6 0.067 2.3E-06 62.5 12.6 73 983-1055 96-191 (433)
288 1zp6_A Hypothetical protein AT 95.6 0.0065 2.2E-07 61.4 3.7 36 984-1019 9-44 (191)
289 1zak_A Adenylate kinase; ATP:A 95.5 0.0051 1.7E-07 64.2 2.8 31 985-1015 6-36 (222)
290 1e4v_A Adenylate kinase; trans 95.5 0.0067 2.3E-07 63.0 3.5 30 986-1015 2-31 (214)
291 3bgw_A DNAB-like replicative h 95.5 0.15 5.3E-06 59.5 15.2 38 981-1018 194-234 (444)
292 3sr0_A Adenylate kinase; phosp 95.4 0.01 3.6E-07 62.4 4.7 29 986-1014 2-30 (206)
293 2pbr_A DTMP kinase, thymidylat 95.4 0.012 4E-07 59.2 4.8 32 986-1017 2-36 (195)
294 4eun_A Thermoresistant glucoki 95.4 0.012 4.2E-07 60.4 5.1 31 984-1014 29-59 (200)
295 2pez_A Bifunctional 3'-phospho 95.4 0.015 5.1E-07 58.4 5.5 36 984-1019 5-43 (179)
296 3umf_A Adenylate kinase; rossm 95.3 0.013 4.5E-07 62.3 5.1 31 984-1014 29-59 (217)
297 2jaq_A Deoxyguanosine kinase; 95.3 0.012 4.1E-07 59.7 4.5 29 986-1014 2-30 (205)
298 2ga8_A Hypothetical 39.9 kDa p 95.3 0.01 3.6E-07 67.6 4.3 30 985-1014 25-54 (359)
299 3b6e_A Interferon-induced heli 95.1 0.041 1.4E-06 56.0 8.0 24 985-1008 49-72 (216)
300 1nks_A Adenylate kinase; therm 95.1 0.0093 3.2E-07 59.8 3.1 36 985-1020 2-40 (194)
301 3crm_A TRNA delta(2)-isopenten 95.1 0.014 4.7E-07 65.8 4.7 34 985-1018 6-39 (323)
302 3sfz_A APAF-1, apoptotic pepti 95.1 0.084 2.9E-06 67.7 12.5 48 948-1007 123-170 (1249)
303 2xb4_A Adenylate kinase; ATP-b 95.1 0.015 5.3E-07 61.0 4.8 30 986-1015 2-31 (223)
304 1cke_A CK, MSSA, protein (cyti 95.1 0.017 5.7E-07 60.0 4.9 30 985-1014 6-35 (227)
305 1q57_A DNA primase/helicase; d 95.1 0.076 2.6E-06 62.6 11.1 37 982-1018 240-280 (503)
306 2eyu_A Twitching motility prot 95.0 0.014 4.8E-07 63.4 4.4 71 983-1053 24-108 (261)
307 2if2_A Dephospho-COA kinase; a 95.0 0.012 4E-07 60.3 3.5 30 986-1016 3-32 (204)
308 2z0h_A DTMP kinase, thymidylat 95.0 0.018 6E-07 58.2 4.8 31 987-1017 3-36 (197)
309 2v54_A DTMP kinase, thymidylat 95.0 0.016 5.4E-07 59.0 4.4 33 985-1017 5-38 (204)
310 1sxj_C Activator 1 40 kDa subu 95.0 0.1 3.5E-06 58.0 11.2 40 704-746 110-149 (340)
311 2ius_A DNA translocase FTSK; n 94.9 0.13 4.3E-06 61.4 12.3 60 1045-1115 299-360 (512)
312 1uf9_A TT1252 protein; P-loop, 94.9 0.015 5E-07 59.1 3.7 32 984-1016 8-39 (203)
313 1w5s_A Origin recognition comp 94.8 0.24 8.4E-06 55.5 13.8 55 689-745 125-187 (412)
314 3ake_A Cytidylate kinase; CMP 94.7 0.02 6.9E-07 58.3 4.4 31 986-1016 4-34 (208)
315 2plr_A DTMP kinase, probable t 94.7 0.03 1E-06 57.1 5.6 31 985-1015 5-37 (213)
316 2ewv_A Twitching motility prot 94.7 0.036 1.2E-06 63.3 6.7 71 983-1053 135-219 (372)
317 3uie_A Adenylyl-sulfate kinase 94.7 0.031 1.1E-06 57.4 5.6 38 983-1020 24-64 (200)
318 1p9r_A General secretion pathw 94.6 0.12 4E-06 60.2 10.7 93 946-1053 144-246 (418)
319 2wwf_A Thymidilate kinase, put 94.6 0.012 4E-07 60.3 2.1 30 984-1013 10-39 (212)
320 1w36_D RECD, exodeoxyribonucle 94.6 0.091 3.1E-06 63.8 10.1 24 985-1008 165-188 (608)
321 2bbw_A Adenylate kinase 4, AK4 94.5 0.025 8.6E-07 60.0 4.6 31 984-1014 27-57 (246)
322 4gp7_A Metallophosphoesterase; 94.5 0.11 3.9E-06 52.1 9.2 19 985-1003 10-28 (171)
323 4a1f_A DNAB helicase, replicat 94.5 0.068 2.3E-06 60.5 8.2 36 982-1017 44-82 (338)
324 2grj_A Dephospho-COA kinase; T 94.4 0.021 7.3E-07 59.3 3.8 32 985-1016 13-44 (192)
325 1m7g_A Adenylylsulfate kinase; 94.4 0.05 1.7E-06 56.3 6.5 36 984-1019 25-64 (211)
326 1jjv_A Dephospho-COA kinase; P 94.4 0.017 5.9E-07 59.2 3.0 29 986-1015 4-32 (206)
327 1ex7_A Guanylate kinase; subst 94.4 0.035 1.2E-06 57.6 5.3 23 986-1008 3-25 (186)
328 3r20_A Cytidylate kinase; stru 94.4 0.03 1E-06 60.2 4.9 30 985-1014 10-39 (233)
329 1jr3_D DNA polymerase III, del 94.4 0.092 3.1E-06 58.4 8.9 102 985-1110 19-134 (343)
330 3a8t_A Adenylate isopentenyltr 94.3 0.021 7.2E-07 64.7 3.7 34 985-1018 41-74 (339)
331 4e22_A Cytidylate kinase; P-lo 94.3 0.034 1.2E-06 59.7 5.2 31 984-1014 27-57 (252)
332 1nn5_A Similar to deoxythymidy 94.3 0.015 5E-07 59.6 2.2 25 985-1009 10-34 (215)
333 1uj2_A Uridine-cytidine kinase 94.3 0.032 1.1E-06 59.6 4.8 37 985-1021 23-67 (252)
334 3nwj_A ATSK2; P loop, shikimat 94.3 0.028 9.7E-07 60.8 4.4 32 985-1016 49-80 (250)
335 2yvu_A Probable adenylyl-sulfa 94.2 0.048 1.6E-06 55.1 5.6 37 983-1019 12-51 (186)
336 1vht_A Dephospho-COA kinase; s 93.9 0.035 1.2E-06 57.5 4.1 30 985-1015 5-34 (218)
337 2h92_A Cytidylate kinase; ross 93.9 0.033 1.1E-06 57.6 3.8 32 985-1016 4-35 (219)
338 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.026 8.9E-07 63.4 3.1 69 985-1053 172-250 (330)
339 1ltq_A Polynucleotide kinase; 93.8 0.027 9.2E-07 61.3 3.1 32 985-1016 3-35 (301)
340 2px0_A Flagellar biosynthesis 93.8 0.18 6.1E-06 55.8 9.8 36 983-1018 104-143 (296)
341 1q3t_A Cytidylate kinase; nucl 93.8 0.051 1.7E-06 57.4 5.1 32 983-1014 15-46 (236)
342 3foz_A TRNA delta(2)-isopenten 93.8 0.041 1.4E-06 61.7 4.6 34 985-1018 11-44 (316)
343 2gxq_A Heat resistant RNA depe 93.7 0.12 4.1E-06 52.5 7.6 23 985-1007 39-62 (207)
344 3zvl_A Bifunctional polynucleo 93.6 0.062 2.1E-06 62.2 5.9 33 984-1016 258-290 (416)
345 3pie_A 5'->3' exoribonuclease 93.6 0.037 1.3E-06 70.8 4.3 76 584-669 1051-1126(1155)
346 2qt1_A Nicotinamide riboside k 93.6 0.032 1.1E-06 57.3 3.0 34 983-1016 20-54 (207)
347 2j37_W Signal recognition part 93.5 0.46 1.6E-05 56.5 13.1 35 983-1017 100-137 (504)
348 3ney_A 55 kDa erythrocyte memb 93.4 0.066 2.2E-06 56.1 5.1 25 985-1009 20-44 (197)
349 2f6r_A COA synthase, bifunctio 93.4 0.044 1.5E-06 59.9 4.0 32 984-1016 75-106 (281)
350 4b3f_X DNA-binding protein smu 93.4 0.29 1E-05 59.5 11.5 40 953-1008 190-229 (646)
351 2yhs_A FTSY, cell division pro 93.4 0.7 2.4E-05 54.9 14.2 26 983-1008 292-317 (503)
352 2a5y_B CED-4; apoptosis; HET: 93.3 0.21 7.1E-06 59.6 9.8 44 952-1006 131-174 (549)
353 3d3q_A TRNA delta(2)-isopenten 93.3 0.045 1.6E-06 62.0 3.8 33 985-1017 8-40 (340)
354 3llm_A ATP-dependent RNA helic 93.2 0.4 1.4E-05 50.4 10.9 21 985-1005 77-97 (235)
355 2qor_A Guanylate kinase; phosp 93.1 0.048 1.7E-06 56.1 3.6 26 984-1009 12-37 (204)
356 1j8m_F SRP54, signal recogniti 93.1 0.76 2.6E-05 50.8 13.3 72 984-1055 98-192 (297)
357 2bdt_A BH3686; alpha-beta prot 93.1 0.065 2.2E-06 54.1 4.3 25 986-1010 4-28 (189)
358 3exa_A TRNA delta(2)-isopenten 93.1 0.06 2E-06 60.5 4.4 34 985-1018 4-37 (322)
359 3fdi_A Uncharacterized protein 93.0 0.055 1.9E-06 56.3 3.8 29 986-1014 8-36 (201)
360 2qmh_A HPR kinase/phosphorylas 92.8 0.059 2E-06 56.9 3.5 33 984-1017 34-66 (205)
361 1qde_A EIF4A, translation init 92.6 0.34 1.2E-05 49.9 9.1 60 945-1007 13-75 (224)
362 1hv8_A Putative ATP-dependent 92.6 0.15 5.2E-06 55.8 6.8 24 985-1008 45-68 (367)
363 2axn_A 6-phosphofructo-2-kinas 92.6 0.17 5.7E-06 60.4 7.6 36 984-1019 35-73 (520)
364 2j41_A Guanylate kinase; GMP, 92.6 0.066 2.3E-06 54.4 3.5 24 985-1008 7-30 (207)
365 1sky_E F1-ATPase, F1-ATP synth 92.5 0.31 1.1E-05 57.5 9.4 24 985-1008 152-175 (473)
366 1vec_A ATP-dependent RNA helic 92.4 0.28 9.7E-06 49.7 8.1 18 985-1002 41-58 (206)
367 1w4r_A Thymidine kinase; type 92.4 0.17 5.7E-06 53.1 6.3 69 984-1055 20-103 (195)
368 3eph_A TRNA isopentenyltransfe 92.4 0.084 2.9E-06 61.2 4.4 33 985-1017 3-35 (409)
369 2oap_1 GSPE-2, type II secreti 92.3 0.081 2.8E-06 63.0 4.4 69 985-1053 261-343 (511)
370 3thx_B DNA mismatch repair pro 92.3 0.37 1.3E-05 61.3 10.5 24 984-1007 673-696 (918)
371 2w58_A DNAI, primosome compone 92.3 0.066 2.3E-06 54.6 3.1 82 436-528 7-91 (202)
372 3b9q_A Chloroplast SRP recepto 92.2 1 3.6E-05 49.8 13.0 26 983-1008 99-124 (302)
373 3tau_A Guanylate kinase, GMP k 92.2 0.078 2.7E-06 55.0 3.7 26 984-1009 8-33 (208)
374 3asz_A Uridine kinase; cytidin 92.2 0.087 3E-06 54.0 3.9 31 984-1014 6-38 (211)
375 1xx6_A Thymidine kinase; NESG, 92.2 0.42 1.4E-05 49.6 9.1 69 985-1055 9-93 (191)
376 1kgd_A CASK, peripheral plasma 92.1 0.091 3.1E-06 53.1 3.9 24 985-1008 6-29 (180)
377 3tr0_A Guanylate kinase, GMP k 92.0 0.1 3.4E-06 53.1 4.0 24 985-1008 8-31 (205)
378 1tf7_A KAIC; homohexamer, hexa 91.9 0.53 1.8E-05 55.8 10.8 74 983-1056 280-384 (525)
379 3n70_A Transport activator; si 91.7 0.11 3.8E-06 50.7 3.9 40 490-532 22-64 (145)
380 1rz3_A Hypothetical protein rb 91.7 0.18 6.1E-06 51.9 5.5 35 984-1018 22-59 (201)
381 2xau_A PRE-mRNA-splicing facto 91.6 0.49 1.7E-05 59.1 10.4 23 985-1007 110-132 (773)
382 1nrj_B SR-beta, signal recogni 91.6 0.91 3.1E-05 46.3 10.8 24 985-1008 13-36 (218)
383 2ffh_A Protein (FFH); SRP54, s 91.6 1.2 4.3E-05 51.7 13.1 73 983-1055 97-192 (425)
384 1zu4_A FTSY; GTPase, signal re 91.6 1.7 5.7E-05 48.6 13.7 35 983-1017 104-141 (320)
385 3thx_A DNA mismatch repair pro 91.6 0.56 1.9E-05 59.8 10.9 22 985-1006 663-684 (934)
386 3c8u_A Fructokinase; YP_612366 91.6 0.12 4E-06 53.5 4.1 27 983-1009 21-47 (208)
387 2v3c_C SRP54, signal recogniti 91.5 0.15 5E-06 59.6 5.2 35 984-1018 99-136 (432)
388 3e70_C DPA, signal recognition 91.4 0.4 1.4E-05 53.9 8.5 26 983-1008 128-153 (328)
389 2bjv_A PSP operon transcriptio 91.4 0.23 7.8E-06 52.9 6.3 63 451-530 3-68 (265)
390 1t6n_A Probable ATP-dependent 91.3 1 3.5E-05 46.2 10.9 24 985-1008 52-75 (220)
391 1tf7_A KAIC; homohexamer, hexa 91.3 0.74 2.5E-05 54.6 11.1 22 983-1004 38-59 (525)
392 2xxa_A Signal recognition part 91.3 0.42 1.4E-05 55.7 8.8 74 982-1055 98-195 (433)
393 3hdt_A Putative kinase; struct 91.1 0.13 4.5E-06 54.7 3.9 30 985-1014 15-44 (223)
394 1x6v_B Bifunctional 3'-phospho 91.0 0.16 5.4E-06 62.0 5.0 34 985-1018 53-89 (630)
395 3gmt_A Adenylate kinase; ssgci 90.9 0.16 5.5E-06 54.5 4.4 31 985-1015 9-39 (230)
396 2pl3_A Probable ATP-dependent 90.9 0.51 1.7E-05 49.1 8.2 17 985-1001 63-79 (236)
397 3lxx_A GTPase IMAP family memb 90.9 1 3.5E-05 47.1 10.6 25 984-1008 29-53 (239)
398 1vt4_I APAF-1 related killer D 90.8 0.44 1.5E-05 61.4 8.9 43 952-1007 131-173 (1221)
399 1ls1_A Signal recognition part 90.6 0.5 1.7E-05 52.1 8.3 73 983-1055 97-192 (295)
400 3a00_A Guanylate kinase, GMP k 90.5 0.14 4.8E-06 51.9 3.3 23 986-1008 3-25 (186)
401 1lvg_A Guanylate kinase, GMP k 90.4 0.14 4.9E-06 52.7 3.4 24 985-1008 5-28 (198)
402 1gtv_A TMK, thymidylate kinase 90.4 0.07 2.4E-06 54.6 1.0 24 986-1009 2-25 (214)
403 3tbk_A RIG-I helicase domain; 90.3 0.77 2.6E-05 53.3 9.8 24 985-1008 20-43 (555)
404 3lxw_A GTPase IMAP family memb 90.3 0.3 1E-05 52.0 5.9 26 983-1008 20-45 (247)
405 4eaq_A DTMP kinase, thymidylat 90.1 0.29 9.9E-06 51.8 5.6 32 984-1015 26-59 (229)
406 3pey_A ATP-dependent RNA helic 90.0 0.39 1.3E-05 53.1 6.7 20 985-1004 45-64 (395)
407 3iuy_A Probable ATP-dependent 89.9 0.62 2.1E-05 48.2 7.8 18 985-1002 58-75 (228)
408 2a9k_A RAS-related protein RAL 89.7 1.7 6E-05 42.3 10.5 24 985-1008 19-42 (187)
409 2gza_A Type IV secretion syste 89.6 0.3 1E-05 55.4 5.5 69 985-1053 176-262 (361)
410 2jeo_A Uridine-cytidine kinase 89.5 0.21 7.1E-06 53.0 3.8 27 985-1011 26-52 (245)
411 1a7j_A Phosphoribulokinase; tr 89.4 0.16 5.3E-06 56.0 2.9 35 985-1019 6-43 (290)
412 2zj8_A DNA helicase, putative 89.3 1 3.5E-05 55.3 10.3 17 985-1001 40-56 (720)
413 1htw_A HI0065; nucleotide-bind 89.3 0.26 9E-06 49.5 4.2 26 983-1008 32-57 (158)
414 1zd9_A ADP-ribosylation factor 89.3 1.6 5.3E-05 43.6 9.9 25 984-1008 22-46 (188)
415 1wb9_A DNA mismatch repair pro 89.1 1.5 5.2E-05 55.0 11.7 25 983-1007 606-630 (800)
416 1znw_A Guanylate kinase, GMP k 89.1 0.24 8.3E-06 51.0 3.9 24 985-1008 21-44 (207)
417 3ice_A Transcription terminati 89.0 0.72 2.5E-05 53.4 8.0 32 984-1015 174-210 (422)
418 3bor_A Human initiation factor 88.9 0.54 1.8E-05 49.3 6.5 18 985-1002 68-85 (237)
419 1c9k_A COBU, adenosylcobinamid 88.8 0.23 7.7E-06 51.4 3.3 32 987-1019 2-33 (180)
420 1p5z_B DCK, deoxycytidine kina 88.8 0.14 4.6E-06 55.0 1.8 31 983-1013 23-54 (263)
421 2oxc_A Probable ATP-dependent 88.8 1.4 4.9E-05 45.8 9.6 17 985-1001 62-78 (230)
422 2gj8_A MNME, tRNA modification 88.7 0.66 2.2E-05 46.0 6.7 23 985-1007 5-27 (172)
423 1u8z_A RAS-related protein RAL 88.6 1.9 6.6E-05 41.0 9.7 24 985-1008 5-28 (168)
424 1r8s_A ADP-ribosylation factor 88.6 2.2 7.4E-05 40.9 10.1 23 986-1008 2-24 (164)
425 2j9r_A Thymidine kinase; TK1, 88.5 1.6 5.3E-05 46.4 9.6 32 985-1016 29-63 (214)
426 1wp9_A ATP-dependent RNA helic 88.5 0.92 3.2E-05 50.9 8.5 32 986-1017 25-60 (494)
427 3fht_A ATP-dependent RNA helic 88.5 0.96 3.3E-05 50.4 8.5 55 946-1001 25-81 (412)
428 3p32_A Probable GTPase RV1496/ 88.4 0.98 3.4E-05 50.8 8.6 31 985-1015 80-113 (355)
429 1z6g_A Guanylate kinase; struc 88.4 0.25 8.7E-06 51.7 3.5 24 985-1008 24-47 (218)
430 2bov_A RAla, RAS-related prote 88.3 2.3 8E-05 42.4 10.5 25 984-1008 14-38 (206)
431 3tqf_A HPR(Ser) kinase; transf 88.2 0.35 1.2E-05 50.1 4.3 29 984-1013 16-44 (181)
432 3co5_A Putative two-component 88.1 0.087 3E-06 51.4 -0.2 35 491-528 26-60 (143)
433 3k53_A Ferrous iron transport 88.1 0.68 2.3E-05 49.8 6.8 23 985-1007 4-26 (271)
434 1ky3_A GTP-binding protein YPT 88.0 1.9 6.4E-05 41.9 9.4 25 984-1008 8-32 (182)
435 1odf_A YGR205W, hypothetical 3 88.0 0.25 8.6E-06 54.5 3.3 26 984-1009 31-56 (290)
436 3oiy_A Reverse gyrase helicase 88.0 0.84 2.9E-05 51.6 7.7 21 985-1005 37-57 (414)
437 3h1t_A Type I site-specific re 88.0 0.76 2.6E-05 54.9 7.7 24 985-1008 199-222 (590)
438 2ocp_A DGK, deoxyguanosine kin 87.9 0.35 1.2E-05 50.9 4.3 28 985-1012 3-31 (241)
439 1wms_A RAB-9, RAB9, RAS-relate 87.8 1.6 5.3E-05 42.5 8.6 23 985-1007 8-30 (177)
440 1ewq_A DNA mismatch repair pro 87.8 1.4 4.8E-05 54.9 10.2 23 985-1007 577-599 (765)
441 1m8p_A Sulfate adenylyltransfe 87.8 0.36 1.2E-05 58.2 4.8 36 985-1020 397-436 (573)
442 2fwr_A DNA repair protein RAD2 87.8 0.37 1.3E-05 55.6 4.7 33 986-1018 110-142 (472)
443 4edh_A DTMP kinase, thymidylat 87.7 0.46 1.6E-05 50.0 4.9 32 985-1016 7-41 (213)
444 3iby_A Ferrous iron transport 87.7 2.2 7.6E-05 45.8 10.4 22 986-1007 3-24 (256)
445 1s96_A Guanylate kinase, GMP k 87.6 0.34 1.2E-05 51.1 3.9 26 984-1009 16-41 (219)
446 2j0s_A ATP-dependent RNA helic 87.5 1 3.4E-05 50.5 7.9 58 945-1005 36-95 (410)
447 3pqc_A Probable GTP-binding pr 87.5 1.1 3.9E-05 44.1 7.5 23 985-1007 24-46 (195)
448 2wjg_A FEOB, ferrous iron tran 87.4 1.2 4.1E-05 44.0 7.6 23 985-1007 8-30 (188)
449 1xjc_A MOBB protein homolog; s 87.3 0.57 1.9E-05 47.9 5.2 24 985-1008 5-28 (169)
450 3fe2_A Probable ATP-dependent 87.2 1.2 4.2E-05 46.6 8.0 17 985-1001 67-83 (242)
451 2v9p_A Replication protein E1; 87.2 0.35 1.2E-05 53.9 3.9 30 983-1012 125-154 (305)
452 1bif_A 6-phosphofructo-2-kinas 87.1 0.24 8.2E-06 58.0 2.6 27 984-1010 39-65 (469)
453 2og2_A Putative signal recogni 87.1 0.7 2.4E-05 52.6 6.4 26 983-1008 156-181 (359)
454 1fzq_A ADP-ribosylation factor 87.0 1.3 4.5E-05 44.0 7.7 24 984-1007 16-39 (181)
455 2v6i_A RNA helicase; membrane, 87.0 0.59 2E-05 54.0 5.7 21 985-1005 3-24 (431)
456 3def_A T7I23.11 protein; chlor 86.9 1.9 6.4E-05 46.1 9.3 24 985-1008 37-60 (262)
457 3ly5_A ATP-dependent RNA helic 86.9 0.72 2.5E-05 49.4 6.1 18 985-1002 92-109 (262)
458 3lnc_A Guanylate kinase, GMP k 86.8 0.24 8.1E-06 51.9 2.1 24 985-1008 28-52 (231)
459 2qm8_A GTPase/ATPase; G protei 86.8 1.3 4.4E-05 49.7 8.3 25 984-1008 55-79 (337)
460 1sq5_A Pantothenate kinase; P- 86.7 0.39 1.4E-05 53.0 4.0 25 985-1009 81-105 (308)
461 3ber_A Probable ATP-dependent 86.6 1.2 4E-05 47.3 7.5 18 985-1002 81-98 (249)
462 3dkp_A Probable ATP-dependent 86.6 1.1 3.9E-05 46.7 7.3 17 985-1001 67-83 (245)
463 1z06_A RAS-related protein RAB 86.5 3.1 0.00011 41.2 10.2 24 984-1007 20-43 (189)
464 3kta_A Chromosome segregation 86.4 0.37 1.3E-05 48.1 3.3 24 986-1009 28-51 (182)
465 2va8_A SSO2462, SKI2-type heli 86.4 1.5 5.3E-05 53.5 9.4 18 985-1002 47-64 (715)
466 3dz8_A RAS-related protein RAB 86.3 3.6 0.00012 40.9 10.5 25 984-1008 23-47 (191)
467 2wji_A Ferrous iron transport 86.3 1.1 3.8E-05 43.8 6.5 23 985-1007 4-26 (165)
468 1xti_A Probable ATP-dependent 86.1 4.7 0.00016 44.4 12.4 22 985-1006 46-67 (391)
469 3vkw_A Replicase large subunit 86.0 0.65 2.2E-05 54.4 5.4 25 983-1007 160-184 (446)
470 1rj9_A FTSY, signal recognitio 85.9 0.48 1.6E-05 52.6 4.1 25 984-1008 102-126 (304)
471 3aez_A Pantothenate kinase; tr 85.8 0.51 1.7E-05 52.6 4.2 26 983-1008 89-114 (312)
472 3eiq_A Eukaryotic initiation f 85.7 1.1 3.7E-05 50.1 6.9 18 985-1002 78-95 (414)
473 2gk6_A Regulator of nonsense t 85.7 0.38 1.3E-05 58.4 3.5 23 986-1008 197-219 (624)
474 2qgz_A Helicase loader, putati 85.3 0.4 1.4E-05 53.1 3.1 35 492-528 152-190 (308)
475 2o8b_B DNA mismatch repair pro 85.3 3 0.0001 53.7 11.5 22 985-1006 790-811 (1022)
476 3tqc_A Pantothenate kinase; bi 85.3 0.7 2.4E-05 51.8 5.1 26 984-1009 92-117 (321)
477 4i1u_A Dephospho-COA kinase; s 85.3 0.5 1.7E-05 50.0 3.6 32 985-1017 10-41 (210)
478 3ec2_A DNA replication protein 85.2 0.83 2.8E-05 45.6 5.1 25 492-518 38-62 (180)
479 3v9p_A DTMP kinase, thymidylat 85.1 0.63 2.2E-05 49.6 4.4 32 985-1016 26-64 (227)
480 1g8f_A Sulfate adenylyltransfe 85.1 0.52 1.8E-05 56.1 4.1 26 985-1010 396-421 (511)
481 2dyk_A GTP-binding protein; GT 85.1 0.56 1.9E-05 44.8 3.7 23 985-1007 2-24 (161)
482 3crm_A TRNA delta(2)-isopenten 84.9 0.46 1.6E-05 53.4 3.4 41 491-533 4-44 (323)
483 1qhx_A CPT, protein (chloramph 84.8 0.58 2E-05 46.3 3.8 34 492-527 3-36 (178)
484 2qtf_A Protein HFLX, GTP-bindi 84.7 1.8 6.1E-05 49.2 8.1 23 985-1007 180-202 (364)
485 3trf_A Shikimate kinase, SK; a 84.4 0.43 1.5E-05 47.7 2.6 34 492-527 5-38 (185)
486 2e87_A Hypothetical protein PH 84.2 5.1 0.00017 44.9 11.5 25 984-1008 167-191 (357)
487 4a2p_A RIG-I, retinoic acid in 84.2 3.1 0.00011 48.3 10.2 24 985-1008 23-46 (556)
488 3b85_A Phosphate starvation-in 84.2 0.45 1.5E-05 49.9 2.7 22 986-1007 24-45 (208)
489 1np6_A Molybdopterin-guanine d 84.2 0.59 2E-05 47.8 3.5 24 985-1008 7-30 (174)
490 3fho_A ATP-dependent RNA helic 84.1 2.2 7.5E-05 50.1 8.9 23 985-1007 159-182 (508)
491 2f7s_A C25KG, RAS-related prot 84.1 4.6 0.00016 40.9 10.3 23 985-1007 26-48 (217)
492 2cbz_A Multidrug resistance-as 84.0 0.52 1.8E-05 50.2 3.2 26 983-1008 30-55 (237)
493 3a1s_A Iron(II) transport prot 84.0 1.6 5.4E-05 47.0 6.9 22 985-1006 6-27 (258)
494 3tif_A Uncharacterized ABC tra 84.0 0.52 1.8E-05 50.2 3.2 25 984-1008 31-55 (235)
495 1fuu_A Yeast initiation factor 83.9 1.1 3.8E-05 49.5 6.0 17 985-1001 59-75 (394)
496 1upt_A ARL1, ADP-ribosylation 83.9 0.81 2.8E-05 44.2 4.2 25 983-1007 6-30 (171)
497 2fh5_B SR-beta, signal recogni 83.8 5 0.00017 40.5 10.3 24 985-1008 8-31 (214)
498 1q0u_A Bstdead; DEAD protein, 83.8 2.7 9.3E-05 43.1 8.4 18 985-1002 42-59 (219)
499 2wsm_A Hydrogenase expression/ 83.6 0.78 2.7E-05 47.0 4.2 24 985-1008 31-54 (221)
500 2onk_A Molybdate/tungstate ABC 83.6 0.62 2.1E-05 49.9 3.5 24 985-1008 25-48 (240)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-52 Score=516.82 Aligned_cols=427 Identities=27% Similarity=0.419 Sum_probs=332.4
Q ss_pred ccccccccccccchhHHHHHHhhhhhhcccccccc-ccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 449 i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k-~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
-+|+|++...+ ++.|..|.+.....|+|+++.+ ++ ...++.|||+|||| +++++||||+|++++++++.++.
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~g---~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSCC---CCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHHHhhcC---CCCCCeEEEECCCC--CCHHHHHHHHHHHhCCeEEEEEh
Confidence 36899999999 9999999999988999988753 33 24568999999999 89999999999999999999987
Q ss_pred ccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceee
Q 001244 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1116)
Q Consensus 528 ~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 607 (1116)
.++.+ +|
T Consensus 272 ~~l~s-------------------------------------------------------------------------k~ 278 (806)
T 3cf2_A 272 PEIMS-------------------------------------------------------------------------KL 278 (806)
T ss_dssp HHHHS-------------------------------------------------------------------------SC
T ss_pred HHhhc-------------------------------------------------------------------------cc
Confidence 55443 12
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhH
Q 001244 608 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 687 (1116)
Q Consensus 608 vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~ 687 (1116)
+ ++.+
T Consensus 279 ~---------------------------------------------------------------------------gese 283 (806)
T 3cf2_A 279 A---------------------------------------------------------------------------GESE 283 (806)
T ss_dssp T---------------------------------------------------------------------------THHH
T ss_pred c---------------------------------------------------------------------------hHHH
Confidence 1 2233
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccCCCC
Q 001244 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPG 757 (1116)
Q Consensus 688 ~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~~~~~~ 757 (1116)
..+..+|+.+.. .+|+||||||||.+... ..++.+.|...|+.+.. +|+|||++|+++.
T Consensus 284 ~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~-------- 352 (806)
T 3cf2_A 284 SNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-------- 352 (806)
T ss_dssp HHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT--------
T ss_pred HHHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh--------
Confidence 467788887766 89999999999995431 13567778888888854 8999999998887
Q ss_pred CceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhhcccc
Q 001244 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1116)
Q Consensus 758 ~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~n 835 (1116)
||+| +.+ +|...|+|++|+.++|+..|+.
T Consensus 353 --------------LD~A---------------------LrR~GRFd~~I~i~~Pd~~~R~~IL~~-------------- 383 (806)
T 3cf2_A 353 --------------IDPA---------------------LRRFGRFDREVDIGIPDATGRLEILQI-------------- 383 (806)
T ss_dssp --------------SCTT---------------------TTSTTSSCEEEECCCCCHHHHHHHHHH--------------
T ss_pred --------------cCHH---------------------HhCCcccceEEecCCCCHHHHHHHHHH--------------
Confidence 7876 333 7888889999988888755543
Q ss_pred hhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcc-c-ccccchhhhhHHHHHhhhh
Q 001244 836 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAK-L-KISTESIMYGLNILQGIQS 912 (1116)
Q Consensus 836 Il~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~K-L-vIS~ESLkvglsdFq~aln 912 (1116)
|+. ...+ .++||+.|+..|.+|+++|+..||..|...++.|....+..... . ....+.+.+...+|..++.
T Consensus 384 ----~l~--~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~ 457 (806)
T 3cf2_A 384 ----HTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 457 (806)
T ss_dssp ----TCS--SSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHS
T ss_pred ----Hhc--CCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHH
Confidence 321 1112 67899999999999999999999999999999876543311111 1 0111233344455555544
Q ss_pred hhhhhhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECC
Q 001244 913 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 992 (1116)
Q Consensus 913 e~K~L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GP 992 (1116)
+.++... .. .....+.++|++|+|++++++.|.+.+.+|+++++.|.+.+ .++++++|||||
T Consensus 458 ~~~ps~~----------------r~-~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GP 519 (806)
T 3cf2_A 458 QSNPSAL----------------RE-TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGP 519 (806)
T ss_dssp SSSCCCC----------------CC-CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESS
T ss_pred hCCCccc----------------cc-ccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecC
Confidence 4332110 00 11223468999999999999999999999999999998877 456799999999
Q ss_pred CCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHH
Q 001244 993 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRK 1070 (1116)
Q Consensus 993 PGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~ 1070 (1116)
||||||++|+|||++++.+|+.++.++++++|+|+++++++++|..|++.+||||||||||.|++.|... ..+...++
T Consensus 520 PGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~r 599 (806)
T 3cf2_A 520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CH
T ss_pred CCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888642 34456789
Q ss_pred HHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEEC
Q 001244 1071 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1071 IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~V 1116 (1116)
++++||.+|||+.. ..+|+||||||+|+.||+|++| ||+++|+|
T Consensus 600 v~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 600 VINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC
T ss_pred HHHHHHHHHhCCCC--CCCEEEEEeCCCchhCCHhHcCCCcceEEEEE
Confidence 99999999999975 4679999999999999999999 99999986
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=8.3e-35 Score=362.26 Aligned_cols=423 Identities=28% Similarity=0.438 Sum_probs=311.0
Q ss_pred cccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEeccc
Q 001244 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1116)
Q Consensus 450 ~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1116)
.++|++.-.+ +..+..|.+.....|+|+++.+... -..+..|||+||+| +++++||||||+..+.+++.++...
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l~--i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~~ 273 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSSC--CCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHHH
T ss_pred CCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCeEEEECcCC--CCHHHHHHHHHHHcCCcEEEEEchH
Confidence 6899998887 8888888888888899987653211 24567899999999 8999999999999999988887644
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeeec
Q 001244 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1116)
Q Consensus 530 l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~vg 609 (1116)
+.+. |+|
T Consensus 274 l~~~-------------------------------------------------------------------------~~g 280 (806)
T 1ypw_A 274 IMSK-------------------------------------------------------------------------LAG 280 (806)
T ss_dssp HSSS-------------------------------------------------------------------------STT
T ss_pred hhhh-------------------------------------------------------------------------hhh
Confidence 4330 000
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHHH
Q 001244 610 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 689 (1116)
Q Consensus 610 ~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~~ 689 (1116)
.....
T Consensus 281 ---------------------------------------------------------------------------~~~~~ 285 (806)
T 1ypw_A 281 ---------------------------------------------------------------------------ESESN 285 (806)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------hHHHH
Confidence 01124
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhcC----C----hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCCCCc
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGL 759 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~~----~----~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~~~~~~~~ 759 (1116)
+..+|+.+.. ..|+||||||+|.++.. . .++.+.|...|+.+. .+|++|+++|.++.
T Consensus 286 l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~---------- 352 (806)
T 1ypw_A 286 LRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS---------- 352 (806)
T ss_dssp HHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT----------
T ss_pred HHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh----------
Confidence 5556666655 68999999999995542 1 345566677777664 48999999997655
Q ss_pred eeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhhcccchh
Q 001244 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 837 (1116)
Q Consensus 760 ~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl 837 (1116)
||++ +.. +|...|.+.+|..+.++..|..+.
T Consensus 353 ------------ld~a---------------------l~r~gRf~~~i~i~~p~~~~r~~il~~~~-------------- 385 (806)
T 1ypw_A 353 ------------IDPA---------------------LRRFGRFDREVDIGIPDATGRLEILQIHT-------------- 385 (806)
T ss_dssp ------------SCTT---------------------TTSTTSSCEEECCCCCCHHHHHHHHHHTT--------------
T ss_pred ------------cCHH---------------------HhcccccccccccCCCCHHHHHHHHHHHH--------------
Confidence 5554 222 688889999999999886554221
Q ss_pred hhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhh
Q 001244 838 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 916 (1116)
Q Consensus 838 ~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~ 916 (1116)
....+ ...++..++..+.+++++++..++..|...++.+....+.... ..+.. .....
T Consensus 386 ------~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~-~~~~~-------~~~~~------- 444 (806)
T 1ypw_A 386 ------KNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDA-------EVMNS------- 444 (806)
T ss_dssp ------TTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHCCH-------HHHTT-------
T ss_pred ------hcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh-hccch-------hhhhh-------
Confidence 11112 5568889999999999999999999988877765433211000 00000 00000
Q ss_pred hhhhhhhccChhHHHHHHhc------CCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEE
Q 001244 917 LKKSLKDVVTENEFEKKLLA------DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 990 (1116)
Q Consensus 917 L~~~lk~~v~~~e~e~~ll~------~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~ 990 (1116)
..+...++...+.. .........++|++++|++++++.|.+++.+++.+++.|...++ .+..++||+
T Consensus 445 ------~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~ 517 (806)
T 1ypw_A 445 ------LAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFY 517 (806)
T ss_dssp ------CCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCB
T ss_pred ------hhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC-CCCceeEEE
Confidence 00111222222110 00111223688999999999999999999999999998887664 455899999
Q ss_pred CCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHH
Q 001244 991 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAM 1068 (1116)
Q Consensus 991 GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~l 1068 (1116)
||||||||+||++||.+++.+|+.++++++.++|+|+.++.++.+|+.|+...|+||||||||.|+..+... ......
T Consensus 518 GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~ 597 (806)
T 1ypw_A 518 GPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAA 597 (806)
T ss_dssp CCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhH
Confidence 999999999999999999999999999999999999999999999999999999999999999998877543 234577
Q ss_pred HHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEEC
Q 001244 1069 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1069 r~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~V 1116 (1116)
.+++++|+..|+++.. ..+++||+|||+++.||++++| ||++.|++
T Consensus 598 ~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~ 645 (806)
T 1ypw_A 598 DRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCC
T ss_pred HHHHHHHHHHHhcccc--cCCeEEEEecCCcccCCHHHhCccccCceeec
Confidence 8999999999999854 4689999999999999999999 99988864
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.5e-32 Score=312.80 Aligned_cols=170 Identities=36% Similarity=0.642 Sum_probs=157.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
++++|+||||+++++++|++.|.+|+++|++|...++ +|++|+|||||||||||+||+|||++++.+|+.++++++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4799999999999999999999999999999998774 566999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|++++.++.+|..|+..+||||||||||.+++.|... +.....++++++||..|||+.. ..+|+||||||+|+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChhh
Confidence 999999999999999999999999999999999887543 2334567889999999999865 568999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||+||+| ||+++|+|
T Consensus 300 LDpAllRpGRfD~~I~i 316 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEF 316 (405)
T ss_dssp SCHHHHSTTSSCCEEEC
T ss_pred CCHhHcCCCcCceEEEc
Confidence 9999999 99999986
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-31 Score=305.22 Aligned_cols=170 Identities=38% Similarity=0.657 Sum_probs=155.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
+.++|+||||+++++++|++.+.+|+.+|++|...++ ++++|||||||||||||+||+|||++++.+|+.++++++.++
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 4789999999999999999999999999999998874 566999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCc--hhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~--~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|++++.++.+|..|+..+||||||||||.+++.|.... ......+++++||..||++.. ..+|+||||||+|+.
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKIET 333 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCSTT
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCChhh
Confidence 9999999999999999999999999999999998885432 223556788999999999864 467999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||+||+| ||+++|+|
T Consensus 334 LDpALlRpGRfD~~I~v 350 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILF 350 (437)
T ss_dssp CCTTSSCTTTEEEEECC
T ss_pred cCHHHhcCCceeEEEEc
Confidence 9999999 99999975
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=302.13 Aligned_cols=170 Identities=38% Similarity=0.667 Sum_probs=156.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
++++|+||||+++++++|++.|.+|+.+|++|...++ +|++|||||||||||||+||+|||++++.+|+.++++++.++
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 4799999999999999999999999999999998774 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|++++.++.+|..|+..+||||||||||.+++.|... +......+++++||..|+++.. ..+|+||||||+|+.
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPNT 360 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTTS
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCccc
Confidence 999999999999999999999999999999999887543 3344567888999999999864 568999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||+||+| ||+++|+|
T Consensus 361 LDpALlRpGRFD~~I~i 377 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEF 377 (467)
T ss_dssp BCHHHHSTTTCCEEECC
T ss_pred CChhhhccccccEEEEe
Confidence 9999999 99999976
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-31 Score=304.49 Aligned_cols=171 Identities=36% Similarity=0.643 Sum_probs=157.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
.+.++|+||||++++++.|.+.+.+|+.+|++|.+.++ ++++|||||||||||||+||+|||++++.+|+.++++++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45889999999999999999999999999999998874 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCch--hHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~--~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
+|+|++++.++.+|..|+..+||||||||||.+++.|..... .....+++++||..|+++.. ..+|+||||||+|+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--CCCEEEEEeCCCch
Confidence 999999999999999999999999999999999988865432 23566788999999999875 46799999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.||+||+| ||+++|+|
T Consensus 332 ~LD~AllRpGRfD~~I~i 349 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEF 349 (434)
T ss_dssp CCCTTTCSTTSEEEEEEC
T ss_pred hcCHhHhcCCceeEEEEe
Confidence 99999999 99999986
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=303.64 Aligned_cols=170 Identities=42% Similarity=0.724 Sum_probs=156.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
+.++|+||||++++++.|.+.+.+|+.+|++|...++ +|++|||||||||||||+||+|||++++++|+.++++++.++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 4789999999999999999999999999999998874 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCc--hhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~--~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|++++.++.+|..|+..+||||||||||.+++.|...+ ......+++++||..|||+.. ..+|+||||||+|+.
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTTS
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--CCCeEEEEecCCchh
Confidence 9999999999999999999999999999999998875432 234567889999999999865 467999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||+||+| ||+++|+|
T Consensus 333 LDpAllRpGRfD~~I~i 349 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEI 349 (437)
T ss_dssp SCTTTTSTTSEEEEECC
T ss_pred hCHHHhCCCccceeeec
Confidence 9999999 69999875
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-30 Score=300.46 Aligned_cols=170 Identities=41% Similarity=0.696 Sum_probs=156.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
++++|+||||++++++.|.+.+.+|+.+|++|...++ .+++|+|||||||||||+||+|||++++++|+.++++++.++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 4789999999999999999999999999999998775 566999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|++++.++.+|..|+..+||||||||||.+++.|... .......+++++||..|||+.. ..+|+||||||+|+.
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRADT 323 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCSSS
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChhh
Confidence 999999999999999999999999999999999887443 2233567899999999999865 467999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||+||+| ||+++|++
T Consensus 324 LD~AllRpGRfd~~I~~ 340 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEF 340 (428)
T ss_dssp CCHHHHSSSSEEEEEEC
T ss_pred cChhhhcCCcceEEEEc
Confidence 9999999 99999875
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=2.7e-27 Score=292.51 Aligned_cols=169 Identities=43% Similarity=0.698 Sum_probs=156.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
..++|+||+|+++++++|++.+.+|+++|++|...++ +|++|||||||||||||+||++||++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 3789999999999999999999999999999998874 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD 1103 (1116)
|.|++++.++.+|..|++++|+||||||||.|++.|... ..+..++++++|+.+|+++.. +.+|+||||||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC-CChHHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcC
Confidence 999999999999999999999999999999999887653 234557899999999999865 46799999999999999
Q ss_pred HHHHh--hcCCeEEC
Q 001244 1104 EAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1104 ~ALlR--RF~r~I~V 1116 (1116)
++|+| ||++.|+|
T Consensus 355 ~ALrR~GRFd~~I~i 369 (806)
T 3cf2_A 355 PALRRFGRFDREVDI 369 (806)
T ss_dssp TTTTSTTSSCEEEEC
T ss_pred HHHhCCcccceEEec
Confidence 99999 99999986
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.7e-25 Score=247.23 Aligned_cols=169 Identities=50% Similarity=0.847 Sum_probs=153.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-CCeeeEEecccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1022 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is~seL~s 1022 (1116)
+.++|+||+|++++++.|.+.+.+|++++++|... ..|++++||+||||||||+||+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 36899999999999999999999999999998743 5677899999999999999999999999 99999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~L 1102 (1116)
+|.|+.++.++.+|..|+...|+||||||||.+.+.+... ......+++++|+..|+++.. ...+++||+|||+++.|
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998877553 445678899999999999753 35789999999999999
Q ss_pred cHHHHhhcCCeEEC
Q 001244 1103 DEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1103 D~ALlRRF~r~I~V 1116 (1116)
|++++|||++.|+|
T Consensus 163 d~al~rRf~~~i~i 176 (322)
T 1xwi_A 163 DSAIRRRFEKRIYI 176 (322)
T ss_dssp CHHHHHTCCEEEEC
T ss_pred CHHHHhhcCeEEEe
Confidence 99999999998875
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.91 E-value=1.4e-24 Score=242.45 Aligned_cols=170 Identities=49% Similarity=0.848 Sum_probs=150.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
.+.++|++|+|++.+++.|.+.+.+++.+++.|... ..+++++||+||||||||+||++||++++.+|+.++++++.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 346899999999999999999999999999998764 456789999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~L 1102 (1116)
.|+|+.+..++.+|..|+...|+||||||||.|.+.+.. ......++++++|+..++++.. ...+++||+|||+++.|
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGS
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhC
Confidence 999999999999999999999999999999999876643 2334557888999999998754 35689999999999999
Q ss_pred cHHHHhhcCCeEEC
Q 001244 1103 DEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1103 D~ALlRRF~r~I~V 1116 (1116)
|++++|||++.|++
T Consensus 168 d~al~~Rf~~~i~~ 181 (322)
T 3eie_A 168 DSAIRRRFERRIYI 181 (322)
T ss_dssp CHHHHHHCCEEEEC
T ss_pred CHHHHcccCeEEEe
Confidence 99999999998875
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.90 E-value=4.6e-24 Score=242.23 Aligned_cols=172 Identities=48% Similarity=0.839 Sum_probs=145.0
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc
Q 001244 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1116)
Q Consensus 941 ~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL 1020 (1116)
.....++|++|+|++.+++.|.+.+.+++.++++|... ..++++|||+||||||||+||++||++++.+|+.++++++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34457899999999999999999999999999999764 4577899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1021 ~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
...|.|..++.++.+|..|+...|+||||||||.|.+.+.. ......+++.++|+..|+++.. ...+++||+|||+++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPW 198 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhcccc-cCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999877644 3445678889999999998754 246799999999999
Q ss_pred CCcHHHHhhcCCeEEC
Q 001244 1101 DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlRRF~r~I~V 1116 (1116)
.||++++|||++.|+|
T Consensus 199 ~ld~al~rRf~~~i~i 214 (355)
T 2qp9_X 199 QLDSAIRRRFERRIYI 214 (355)
T ss_dssp GSCHHHHHTCCEEEEC
T ss_pred cCCHHHHcccCEEEEe
Confidence 9999999999998875
No 13
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.8e-24 Score=247.30 Aligned_cols=230 Identities=19% Similarity=0.271 Sum_probs=177.7
Q ss_pred ccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 449 i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
-+|||++.-.+ |+.|..|.++.-..|+|+++. +++. +.++.|||+|||| +++++||||+|++++++++.++.
T Consensus 143 p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPG--TGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGL--TKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPG--TGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSS--SSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCC--CCHHHHHHHHHHhhCCCceEEEh
Confidence 47999999999 999999999999999999876 4442 4478999999999 99999999999999999999987
Q ss_pred ccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceee
Q 001244 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1116)
Q Consensus 528 ~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~ 607 (1116)
+.+.. +|
T Consensus 216 s~l~s-------------------------------------------------------------------------k~ 222 (405)
T 4b4t_J 216 AELVQ-------------------------------------------------------------------------KY 222 (405)
T ss_dssp GGGSC-------------------------------------------------------------------------SS
T ss_pred HHhhc-------------------------------------------------------------------------cc
Confidence 65544 23
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhH
Q 001244 608 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 687 (1116)
Q Consensus 608 vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~ 687 (1116)
+| +..
T Consensus 223 vG---------------------------------------------------------------------------ese 227 (405)
T 4b4t_J 223 IG---------------------------------------------------------------------------EGS 227 (405)
T ss_dssp TT---------------------------------------------------------------------------HHH
T ss_pred cc---------------------------------------------------------------------------hHH
Confidence 33 344
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC-----------hhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccC
Q 001244 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKS 754 (1116)
Q Consensus 688 ~~i~~L~evl~~esk~~P~ILfidDie~~l~~~-----------~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~~~ 754 (1116)
..|+.+|+.+.. .+|+||||||||.+...+ ....+.|...|+.+.+ +|+|||+||++|.
T Consensus 228 ~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~----- 299 (405)
T 4b4t_J 228 RMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI----- 299 (405)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-----
T ss_pred HHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-----
Confidence 578999999988 999999999999955411 2356778888888754 9999999998887
Q ss_pred CCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhhc
Q 001244 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKG 832 (1116)
Q Consensus 755 ~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~ 832 (1116)
||+| +.+ +|..+|+|++|+.++|.
T Consensus 300 -----------------LDpA---------------------llRpGRfD~~I~i~lPd~~~R~---------------- 325 (405)
T 4b4t_J 300 -----------------LDPA---------------------LLRPGRIDRKIEFPPPSVAARA---------------- 325 (405)
T ss_dssp -----------------SCHH---------------------HHSTTSSCCEEECCCCCHHHHH----------------
T ss_pred -----------------CCHh---------------------HcCCCcCceEEEcCCcCHHHHH----------------
Confidence 7775 222 55666666666665555
Q ss_pred ccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 833 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 833 R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
.|+++|+. ..++ .++||+.|+..+.+|+|+||+.||..|..+++.+ ++..|+.+++..++...
T Consensus 326 --~Il~~~~~--~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~--------~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 326 --EILRIHSR--KMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE--------RRIHVTQEDFELAVGKV 389 (405)
T ss_dssp --HHHHHHHT--TSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT--------TCSBCCHHHHHHHHHHH
T ss_pred --HHHHHHhc--CCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc--------CCCCcCHHHHHHHHHHH
Confidence 44444432 2223 6779999999999999999999999999998873 33456666666665544
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.89 E-value=1.4e-23 Score=245.19 Aligned_cols=172 Identities=49% Similarity=0.827 Sum_probs=144.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-CCeeeEEeccc
Q 001244 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSS 1019 (1116)
Q Consensus 941 ~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is~se 1019 (1116)
...+.++|++|+|++.+++.|.+.+.+|+.++++|... ..++++|||+||||||||+||++||+++ +.+|+.+++++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34457899999999999999999999999999988743 4567899999999999999999999999 99999999999
Q ss_pred cccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
+.+.|+|..+..++.+|..++...|+||||||||.|.+.+... .....++++++|+..|+++.. ...+++||+|||++
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~ 281 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIP 281 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCG
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCCc
Confidence 9999999999999999999999999999999999998776543 345567889999999998753 24689999999999
Q ss_pred CCCcHHHHhhcCCeEEC
Q 001244 1100 FDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1100 ~~LD~ALlRRF~r~I~V 1116 (1116)
+.||++++|||++.|+|
T Consensus 282 ~~ld~al~rRf~~~i~i 298 (444)
T 2zan_A 282 WVLDSAIRRRFEKRIYI 298 (444)
T ss_dssp GGSCHHHHTTCCEEEEC
T ss_pred cccCHHHHhhcceEEEe
Confidence 99999999999988875
No 15
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.8e-24 Score=245.17 Aligned_cols=232 Identities=20% Similarity=0.239 Sum_probs=179.8
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
+.-+|||++.-.+ |+.|..|.++.-..|+|+++. +++ -+.++.|||+|||| +++++||||||++++++++.+
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPG--TGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPG--TGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCC--chHHHHHHHHHHHhCCCEEEE
Confidence 4567999999999 999999999999999999875 344 34568999999999 999999999999999999999
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
+.+.|..
T Consensus 248 ~~s~l~s------------------------------------------------------------------------- 254 (437)
T 4b4t_I 248 VGSELIQ------------------------------------------------------------------------- 254 (437)
T ss_dssp ESGGGCC-------------------------------------------------------------------------
T ss_pred EHHHhhh-------------------------------------------------------------------------
Confidence 8765544
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
+|+| +
T Consensus 255 k~vG---------------------------------------------------------------------------e 259 (437)
T 4b4t_I 255 KYLG---------------------------------------------------------------------------D 259 (437)
T ss_dssp SSSS---------------------------------------------------------------------------H
T ss_pred ccCc---------------------------------------------------------------------------h
Confidence 2332 3
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------C---hhhHHHHHHHHhcCC--CCEEEEeeccCCCcccc
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKE 752 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~---~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~ 752 (1116)
....++.+|+.+.+ .+|+||||||+|.++.. . ....+.|...|+.+. ++|+|||+||++|.
T Consensus 260 sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~--- 333 (437)
T 4b4t_I 260 GPRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET--- 333 (437)
T ss_dssp HHHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT---
T ss_pred HHHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh---
Confidence 34578899999988 99999999999995541 1 234566777777774 48999999999887
Q ss_pred cCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhh
Q 001244 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETL 830 (1116)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdl 830 (1116)
||+|+ .+ +|..+|+|++|+.++|...|+
T Consensus 334 -------------------LDpAL---------------------lRpGRfD~~I~v~lPd~~~R~~Il~---------- 363 (437)
T 4b4t_I 334 -------------------LDPAL---------------------IRPGRIDRKILFENPDLSTKKKILG---------- 363 (437)
T ss_dssp -------------------CCTTS---------------------SCTTTEEEEECCCCCCHHHHHHHHH----------
T ss_pred -------------------cCHHH---------------------hcCCceeEEEEcCCcCHHHHHHHHH----------
Confidence 88873 22 667777777777777765554
Q ss_pred hcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 831 k~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
+|+. ...+ .++||+.|+..+.+|+|+||+.||..|...++.+. +..|+.+++..++...
T Consensus 364 --------~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--------~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 364 --------IHTS--KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--------RMQVTAEDFKQAKERV 423 (437)
T ss_dssp --------HHHT--TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--------CSCBCHHHHHHHHHHH
T ss_pred --------HHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHH
Confidence 3321 1223 56799999999999999999999999999988732 3446666666655443
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.89 E-value=9.8e-24 Score=233.73 Aligned_cols=170 Identities=43% Similarity=0.736 Sum_probs=148.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
+.++|++|+|++++++.|.+.+.+++.+++.|...++ .+++++||+||||||||+||++||++++.+|+.++++++.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 3689999999999999999999999999999987664 456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
|+|+.++.++.+|..|+...|+||||||||.|...+... .......+++++|+..|+++.. ..+++||+|||+++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 999999999999999999999999999999998654321 0111234677889999998754 467999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||++++| ||++.|+|
T Consensus 167 ld~al~r~gRf~~~i~i 183 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYI 183 (301)
T ss_dssp SCGGGGSTTSSCEEEEC
T ss_pred cChHHhcCCccceEEec
Confidence 9999999 99988875
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.88 E-value=9.3e-23 Score=223.96 Aligned_cols=168 Identities=42% Similarity=0.703 Sum_probs=140.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|+||+|++++++.|.+.+.+|+.+++.|...++. +++|+||+||||||||+||++||..++.+++.++..++...|
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 6899999999999999999999999999999887754 447899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcH
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ 1104 (1116)
.|+.++.++.+|+.++...|+++|+||||.++..+... ......+++++++..|++... ...++++|+||+|+.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCH
Confidence 99999999999999988899999999999987655331 222345678899999999854 467999999999999999
Q ss_pred HHHh--hcCCeEEC
Q 001244 1105 AVVR--RLPRRTCV 1116 (1116)
Q Consensus 1105 ALlR--RF~r~I~V 1116 (1116)
+++| ||++.|+|
T Consensus 162 al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 162 AILRPGRLDKTLFV 175 (274)
T ss_dssp HHHSTTSSCEEEEC
T ss_pred hhcCcccCCeEEEe
Confidence 9999 99999986
No 18
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.9e-23 Score=239.28 Aligned_cols=231 Identities=20% Similarity=0.201 Sum_probs=175.5
Q ss_pred cccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 448 ~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
.-+|||++.-.+ |+.|..|.++....|+|++.. +++- ..++.|||+|||| +++++||||||++++++++.++
T Consensus 203 ~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPG--TGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 203 KPDVTYSDVGGC--KDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPG--TGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCC--CcHHHHHHHHHhccCCCeEEEE
Confidence 447999999999 999999999999999998866 4543 4688999999999 9999999999999999999998
Q ss_pred cccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCcee
Q 001244 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1116)
Q Consensus 527 s~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 606 (1116)
.+.|.+ +
T Consensus 276 ~s~L~s-------------------------------------------------------------------------k 282 (467)
T 4b4t_H 276 GSELVQ-------------------------------------------------------------------------K 282 (467)
T ss_dssp GGGGCC-------------------------------------------------------------------------C
T ss_pred hHHhhc-------------------------------------------------------------------------c
Confidence 766654 2
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhh
Q 001244 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1116)
Q Consensus 607 ~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~ 686 (1116)
|+|. .
T Consensus 283 ~vGe---------------------------------------------------------------------------s 287 (467)
T 4b4t_H 283 YVGE---------------------------------------------------------------------------G 287 (467)
T ss_dssp SSSH---------------------------------------------------------------------------H
T ss_pred cCCH---------------------------------------------------------------------------H
Confidence 3332 3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC-----------hhhHHHHHHHHhcCC--CCEEEEeeccCCCccccc
Q 001244 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 753 (1116)
Q Consensus 687 ~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~-----------~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~~ 753 (1116)
...++.+|+.+.. .+|+||||||+|.+...+ ....+.|...|+.+. ++|+|||+||+++.
T Consensus 288 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~---- 360 (467)
T 4b4t_H 288 ARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT---- 360 (467)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS----
T ss_pred HHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc----
Confidence 3478889998888 999999999999955421 234556667777774 49999999998877
Q ss_pred CCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
||+| +.+ +|..+|+|++|+.++|.
T Consensus 361 ------------------LDpA---------------------LlRpGRFD~~I~i~lPd~~~R~--------------- 386 (467)
T 4b4t_H 361 ------------------LDPA---------------------LLRPGRIDRKVEFSLPDLEGRA--------------- 386 (467)
T ss_dssp ------------------BCHH---------------------HHSTTTCCEEECCCCCCHHHHH---------------
T ss_pred ------------------CChh---------------------hhccccccEEEEeCCcCHHHHH---------------
Confidence 7765 222 55556666666655555
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
.|+++|.. ...+ .++|++.|+..+.+|+|+||+.||..|...++.+. +..++.+++..++...
T Consensus 387 ---~Ilk~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~--------~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 387 ---NIFRIHSK--SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--------RKVATEKDFLKAVDKV 450 (467)
T ss_dssp ---HHHHHHHT--TSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT--------CSSBCHHHHHHHHHHH
T ss_pred ---HHHHHHhc--CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--------CCccCHHHHHHHHHHH
Confidence 44444432 2223 56799999999999999999999999999988743 2345666666665544
No 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=227.62 Aligned_cols=170 Identities=51% Similarity=0.887 Sum_probs=146.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
..++|++|+|++.+++.|.+.+.+++.+++.|... ..+++++||+||||||||+||++||++++.+|+.++++++...
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 36799999999999999999999999888887654 3566899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD 1103 (1116)
|.|..+..++.+|..++...|+||||||||.|.+.+.. +.+....+++++|+..+++.......+++||+|||+++.|+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999876643 33446678899999999987654567899999999999999
Q ss_pred HHHHhhcCCeEEC
Q 001244 1104 EAVVRRLPRRTCV 1116 (1116)
Q Consensus 1104 ~ALlRRF~r~I~V 1116 (1116)
++++|||...+++
T Consensus 236 ~~l~~Rf~~~i~i 248 (357)
T 3d8b_A 236 EAARRRLVKRLYI 248 (357)
T ss_dssp HHHHTTCCEEEEC
T ss_pred HHHHhhCceEEEe
Confidence 9999999987764
No 20
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.8e-23 Score=239.86 Aligned_cols=232 Identities=19% Similarity=0.236 Sum_probs=180.1
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
+.-+|||++.-.+ |+.|..|.++....|+|+++. +|+. +.++.|||+|||| +++++||||||++++++++.+
T Consensus 174 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPG--tGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 174 EQGEITFDGIGGL--TEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPG--TGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp ESCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEE
Confidence 3568999999999 999999999999999999865 4553 4678999999999 999999999999999999999
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
+.+.+.+
T Consensus 247 ~~s~l~s------------------------------------------------------------------------- 253 (437)
T 4b4t_L 247 PASGIVD------------------------------------------------------------------------- 253 (437)
T ss_dssp EGGGTCC-------------------------------------------------------------------------
T ss_pred ehhhhcc-------------------------------------------------------------------------
Confidence 8766554
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
+|+| .
T Consensus 254 k~~G---------------------------------------------------------------------------e 258 (437)
T 4b4t_L 254 KYIG---------------------------------------------------------------------------E 258 (437)
T ss_dssp SSSS---------------------------------------------------------------------------H
T ss_pred ccch---------------------------------------------------------------------------H
Confidence 2332 2
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-----------ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcccc
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENLPS--NVVVIGSHTQLDSRKE 752 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~-----------~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~ 752 (1116)
....+..+|+.+.. .+|+||||||+|.+... .....+.|...|+.+.+ +|+|||+||++|.
T Consensus 259 se~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~--- 332 (437)
T 4b4t_L 259 SARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT--- 332 (437)
T ss_dssp HHHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS---
T ss_pred HHHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh---
Confidence 34478888888888 99999999999995541 12346677888888754 8999999999887
Q ss_pred cCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
||+|+ ++ -+|..+|+|++|+.++|...|+.++.
T Consensus 333 -------------------LDpAl--------------------lRpGRfD~~I~i~lPd~~~R~~Il~~~~~------- 366 (437)
T 4b4t_L 333 -------------------LDPAL--------------------LRPGRLDRKVEIPLPNEAGRLEIFKIHTA------- 366 (437)
T ss_dssp -------------------SCTTT--------------------TSTTSEEEEECCCCCCHHHHHHHHHHHHH-------
T ss_pred -------------------hCHHH--------------------hCCCccceeeecCCcCHHHHHHHHHHHhc-------
Confidence 88873 22 25777888888888887756554331
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHH
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsd 906 (1116)
...+ .++||+.|+..+.+|+|+||..||..|...++.+. +..|+.+++..++..
T Consensus 367 -------------~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~--------~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 367 -------------KVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD--------RDHINPDDLMKAVRK 421 (437)
T ss_dssp -------------TSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT--------CSSBCHHHHHHHHHH
T ss_pred -------------CCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--------CCCCCHHHHHHHHHH
Confidence 1112 56799999999999999999999999999988732 234555555555443
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=229.46 Aligned_cols=170 Identities=54% Similarity=0.926 Sum_probs=137.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
..++|++|+|++.+++.|.+++.+++.++++|... ..+..+|||+||||||||+||++||++++.+|+.++++++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 46789999999999999999999998888888654 3456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCc
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD 1103 (1116)
|.|..+..++.+|..++...|+||||||||.|++.+.. ..+....+++++|+..+++.......+++||+|||+++.|+
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999876643 33445678888999999987655567899999999999999
Q ss_pred HHHHhhcCCeEEC
Q 001244 1104 EAVVRRLPRRTCV 1116 (1116)
Q Consensus 1104 ~ALlRRF~r~I~V 1116 (1116)
++++|||...|++
T Consensus 267 ~~l~~R~~~~i~i 279 (389)
T 3vfd_A 267 EAVLRRFIKRVYV 279 (389)
T ss_dssp HHHHTTCCEEEEC
T ss_pred HHHHcCcceEEEc
Confidence 9999999987764
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.87 E-value=6.7e-22 Score=216.52 Aligned_cols=171 Identities=53% Similarity=0.904 Sum_probs=144.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
...++|++|+|++.+++.|.+.+.+++.++++|... ..+..++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 346899999999999999999999998888888643 356689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC-CCCCEEEEEEeCCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k-~~~kVLVIaTTNrp~~ 1101 (1116)
.+.|..+..++.+|..+....|+||||||||.+...+... ......++.++|+..+++.... ...+++||+|||+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 9999999999999999999999999999999998766431 2223456778888888877542 1357999999999999
Q ss_pred CcHHHHhhcCCeEEC
Q 001244 1102 LDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlRRF~r~I~V 1116 (1116)
|+++++|||+..+++
T Consensus 172 l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 172 LDEAALRRFTKRVYV 186 (297)
T ss_dssp BCHHHHHHCCEEEEC
T ss_pred CCHHHHhhCCeEEEe
Confidence 999999999988764
No 23
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.3e-22 Score=233.69 Aligned_cols=215 Identities=21% Similarity=0.282 Sum_probs=169.7
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~l 525 (1116)
+.-+|||++.-.+ |..|..|.++....|+|+++. +++. +.++.|||+|||| +++++||||+|++++++++.+
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPG--tGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPG--TGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCC--CCHHHHHHHHHHHhCCCeEEE
Confidence 4567999999999 999999999999999998876 4553 4578899999999 999999999999999999999
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
+.+.+.+
T Consensus 238 ~~~~l~~------------------------------------------------------------------------- 244 (428)
T 4b4t_K 238 NGSEFVH------------------------------------------------------------------------- 244 (428)
T ss_dssp EGGGTCC-------------------------------------------------------------------------
T ss_pred ecchhhc-------------------------------------------------------------------------
Confidence 8766554
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
+|+| .
T Consensus 245 ~~~G---------------------------------------------------------------------------e 249 (428)
T 4b4t_K 245 KYLG---------------------------------------------------------------------------E 249 (428)
T ss_dssp SSCS---------------------------------------------------------------------------H
T ss_pred cccc---------------------------------------------------------------------------h
Confidence 2333 2
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-----------ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcccc
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENLPS--NVVVIGSHTQLDSRKE 752 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~-----------~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~ 752 (1116)
....|+.+|+.+.. .+|+||||||+|.+... ...+.+.|...|+.+.+ +|+|||+||++|.
T Consensus 250 ~e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~--- 323 (428)
T 4b4t_K 250 GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT--- 323 (428)
T ss_dssp HHHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS---
T ss_pred hHHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh---
Confidence 33478889998888 89999999999996542 13467888888998854 8999999998887
Q ss_pred cCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--ccccccccc-CCchHHHHHHHHHHHhhchhh
Q 001244 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQ-LPQDEALLSDWKQQLERDVET 829 (1116)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~-~P~DEa~LRRfe~qle~~Lpd 829 (1116)
||+| +.+ +|..+|+|+ +|+.+++...|.
T Consensus 324 -------------------LD~A---------------------llRpGRfd~~I~~p~lPd~~~R~~Il~--------- 354 (428)
T 4b4t_K 324 -------------------LDPA---------------------LLRPGRLDRKIEFPSLRDRRERRLIFG--------- 354 (428)
T ss_dssp -------------------CCHH---------------------HHSSSSEEEEEECCSSCCHHHHHHHHH---------
T ss_pred -------------------cChh---------------------hhcCCcceEEEEcCCCCCHHHHHHHHH---------
Confidence 7775 222 566666664 666666654444
Q ss_pred hhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccc
Q 001244 830 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1116)
Q Consensus 830 lk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r 882 (1116)
+|+. ...+ .++||+.|+..+.+|+|+||+.+|..|...++.+
T Consensus 355 ---------~~~~--~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 355 ---------TIAS--KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp ---------HHHH--SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------HHhc--CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4422 2223 5679999999999999999999999999998874
No 24
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.87 E-value=9.6e-21 Score=234.40 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=105.5
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccc
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF 1025 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~ 1025 (1116)
.++.|++.+++.+.+.+...... . ....+|..++||+||||||||++|++||+.+ +.+|+.++|+++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~---~--~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG---L--KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT---C--SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc---c--CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 46889999999998887642210 0 0113454579999999999999999999998 78999999999987765
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCc-------CCCCCEEEEEEeCC
Q 001244 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNR 1098 (1116)
Q Consensus 1026 GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~-------k~~~kVLVIaTTNr 1098 (1116)
.. ...++...++.+++||||||||.+- ..+++.|+..|+...- ....+++||+|||.
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAH------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSC------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccC------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 44 2233444555667899999999872 3455566666654221 12357899999997
Q ss_pred CCC------------CcHHHHhhcCCeEEC
Q 001244 1099 PFD------------LDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1099 p~~------------LD~ALlRRF~r~I~V 1116 (1116)
+.. +.++|++||+..|.+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~ 659 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVF 659 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence 654 889999999877653
No 25
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.9e-22 Score=229.99 Aligned_cols=216 Identities=18% Similarity=0.236 Sum_probs=173.4
Q ss_pred CCcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001244 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1116)
Q Consensus 446 ~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~ 524 (1116)
-+.-+|||++.-.+ |+.|..|.++....|+|++.. +++ -+.++.|||+|||| +++++||||+|++++++++.
T Consensus 173 ~~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPG--TGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 173 DEKPTETYSDVGGL--DKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPG--TGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp ESSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCC--CCHHHHHHHHHHHhCCCEEE
Confidence 35678999999999 999999999999999999865 444 34579999999999 99999999999999999999
Q ss_pred EecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCc
Q 001244 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1116)
Q Consensus 525 lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 604 (1116)
++.+.|..
T Consensus 246 v~~s~l~~------------------------------------------------------------------------ 253 (434)
T 4b4t_M 246 LAAPQLVQ------------------------------------------------------------------------ 253 (434)
T ss_dssp EEGGGGCS------------------------------------------------------------------------
T ss_pred Eehhhhhh------------------------------------------------------------------------
Confidence 98766554
Q ss_pred eeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcch
Q 001244 605 VKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDE 684 (1116)
Q Consensus 605 v~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~ 684 (1116)
+|+|
T Consensus 254 -~~vG--------------------------------------------------------------------------- 257 (434)
T 4b4t_M 254 -MYIG--------------------------------------------------------------------------- 257 (434)
T ss_dssp -SCSS---------------------------------------------------------------------------
T ss_pred -cccc---------------------------------------------------------------------------
Confidence 2333
Q ss_pred hhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC-----------hhhHHHHHHHHhcCCC--CEEEEeeccCCCccc
Q 001244 685 VDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLPS--NVVVIGSHTQLDSRK 751 (1116)
Q Consensus 685 ~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~-----------~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~ 751 (1116)
+....++.+|+.+.. .+|+||||||+|.++..+ ....+.|...|+.+.+ +|+|||+||++|.
T Consensus 258 ese~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-- 332 (434)
T 4b4t_M 258 EGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-- 332 (434)
T ss_dssp HHHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC--
T ss_pred hHHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh--
Confidence 233478899998888 899999999999965521 2245567777887754 8999999999888
Q ss_pred ccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhh
Q 001244 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVET 829 (1116)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpd 829 (1116)
||+|+ .+ +|..+|+|++|+.++|...|+.++.
T Consensus 333 --------------------LD~Al---------------------lRpGRfD~~I~i~lPd~~~R~~Il~~~~~----- 366 (434)
T 4b4t_M 333 --------------------LDPAL---------------------LRSGRLDRKIEFPLPSEDSRAQILQIHSR----- 366 (434)
T ss_dssp --------------------CCTTT---------------------CSTTSEEEEEECCCCCHHHHHHHHHHHHH-----
T ss_pred --------------------cCHhH---------------------hcCCceeEEEEeCCcCHHHHHHHHHHHhc-----
Confidence 88873 22 7888888888888888766654331
Q ss_pred hhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccc
Q 001244 830 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1116)
Q Consensus 830 lk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r 882 (1116)
...+ .++|++.|+..+.+|+|+||+.||..|+..++.+
T Consensus 367 ---------------~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 367 ---------------KMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp ---------------HSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1122 5678999999999999999999999999988864
No 26
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=2.3e-20 Score=230.76 Aligned_cols=328 Identities=18% Similarity=0.213 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhc------CChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceee
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFT 762 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~------~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~ 762 (1116)
.+..+++.+.. .++.||||||+|.++. +..++.+.|+..|+ .+.+++||+++.++..+-.
T Consensus 266 ~l~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~--------- 331 (758)
T 1r6b_X 266 RFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIF--------- 331 (758)
T ss_dssp HHHHHHHHHSS---SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCC---------
T ss_pred HHHHHHHHHHh---cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhh---------
Confidence 34555554433 6799999999999543 24555666665555 5789999999843210000
Q ss_pred ccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhh
Q 001244 763 KFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV 842 (1116)
Q Consensus 763 ~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~ 842 (1116)
-+|+ .+..+|. .|.|.+|..+++...|......- + ..|.+
T Consensus 332 --------~~d~---------------------aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~-~---------~~~~v 371 (758)
T 1r6b_X 332 --------EKDR---------------------ALARRFQ-KIDITEPSIEETVQIINGLKPKY-E---------AHHDV 371 (758)
T ss_dssp --------CCTT---------------------SSGGGEE-EEECCCCCHHHHHHHHHHHHHHH-H---------HHHTC
T ss_pred --------hcCH---------------------HHHhCce-EEEcCCCCHHHHHHHHHHHHHHH-H---------HhcCC
Confidence 0222 2556776 79999999999876555322210 0 00100
Q ss_pred hhcCCCCCCCchhhhcc------ccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHHhhhhhhhh
Q 001244 843 LSRNGLDCVDLESLCIK------DQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 916 (1116)
Q Consensus 843 l~~~~lecvDLeeLai~------dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq~alne~K~ 916 (1116)
.+....+..++.. +..++. .+..++..|....... +. ......++.+++...+..+...... .
T Consensus 372 ----~~~~~al~~~~~~s~~~i~~~~lp~-~~i~lld~a~~~~~~~--~~--~~~~~~v~~~di~~~~~~~~~ip~~--~ 440 (758)
T 1r6b_X 372 ----RYTAKAVRAAVELAVKYINDRHLPD-KAIDVIDEAGARARLM--PV--SKRKKTVNVADIESVVARIARIPEK--S 440 (758)
T ss_dssp ----CCCHHHHHHHHHHHHHHCTTSCTTH-HHHHHHHHHHHHHHHS--SS--CCCCCSCCHHHHHHHHHHHSCCCCC--C
T ss_pred ----CCCHHHHHHHHHHhhhhcccccCch-HHHHHHHHHHHHHhcc--cc--cccCCccCHHHHHHHHHHhcCCCcc--c
Confidence 0011112222222 222333 3334444443322111 00 0122345556666555544321100 0
Q ss_pred hhhhhhhccChhHHHHHH-hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCC
Q 001244 917 LKKSLKDVVTENEFEKKL-LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGT 995 (1116)
Q Consensus 917 L~~~lk~~v~~~e~e~~l-l~~iIp~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGT 995 (1116)
+..++..... +...+ ..++.|++++++.+...+..... .+. ...+|..++||+|||||
T Consensus 441 --------~~~~~~~~l~~l~~~l--------~~~v~g~~~~~~~l~~~i~~~~~---g~~--~~~~p~~~~ll~G~~Gt 499 (758)
T 1r6b_X 441 --------VSQSDRDTLKNLGDRL--------KMLVFGQDKAIEALTEAIKMARA---GLG--HEHKPVGSFLFAGPTGV 499 (758)
T ss_dssp --------SSSSHHHHHHHHHHHH--------TTTSCSCHHHHHHHHHHHHHHHT---TCS--CTTSCSEEEEEECSTTS
T ss_pred --------cchhHHHHHHHHHHHH--------HhhccCHHHHHHHHHHHHHHHhc---ccC--CCCCCceEEEEECCCCC
Confidence 0011111000 00000 13578999999888887753210 000 11345568999999999
Q ss_pred chHHHHHHHHHHhCCeeeEEeccccccc------------cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCc
Q 001244 996 GKTMLAKAVATEAGANFINISMSSITSK------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1063 (1116)
Q Consensus 996 GKT~LArAIA~elg~pfI~Is~seL~sk------------~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~ 1063 (1116)
|||++|+++|+.++.+|+.++++++... |+|..+. ..++...++.+.+||||||||.+-
T Consensus 500 GKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~------- 570 (758)
T 1r6b_X 500 GKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH------- 570 (758)
T ss_dssp SHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC-------
T ss_pred cHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC-------
Confidence 9999999999999999999999987543 3332221 223445555667999999999772
Q ss_pred hhHHHHHHHHHHHHHhcCCCcC-------CCCCEEEEEEeCCCC-------------------------CCcHHHHhhcC
Q 001244 1064 EHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRPF-------------------------DLDEAVVRRLP 1111 (1116)
Q Consensus 1064 ~~~~lr~IlneLL~~Ldgl~~k-------~~~kVLVIaTTNrp~-------------------------~LD~ALlRRF~ 1111 (1116)
..+++.|+..|+..... +-.+++||+|||... .++++|++||+
T Consensus 571 -----~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~ 645 (758)
T 1r6b_X 571 -----PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD 645 (758)
T ss_dssp -----HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS
T ss_pred -----HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC
Confidence 34666667666642211 124689999999754 57899999998
Q ss_pred CeEEC
Q 001244 1112 RRTCV 1116 (1116)
Q Consensus 1112 r~I~V 1116 (1116)
..|.+
T Consensus 646 ~~i~~ 650 (758)
T 1r6b_X 646 NIIWF 650 (758)
T ss_dssp EEEEC
T ss_pred cceee
Confidence 77653
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=2.9e-21 Score=209.94 Aligned_cols=169 Identities=44% Similarity=0.744 Sum_probs=147.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|++|+|++++++.|.+.+..++.+++.|...++ .+..++||+||||||||+||+++|++++.+|+.+++.++...+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 578999999999999999999999999999988764 4457999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCc--hhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~--~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~L 1102 (1116)
.|..+..++.+|..++...|+||||||||.+.+.+.... ........+..++..+++... ..+++||+|||.++.|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 999999999999999999999999999999987665421 122345666778888877653 4579999999999999
Q ss_pred cHHHHh--hcCCeEEC
Q 001244 1103 DEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1103 D~ALlR--RF~r~I~V 1116 (1116)
+++++| ||++.+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~ 185 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEV 185 (285)
T ss_dssp CHHHHSTTSEEEEEEC
T ss_pred CHHHcCCCcCCeEEEE
Confidence 999999 99887764
No 28
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.86 E-value=2.1e-21 Score=228.61 Aligned_cols=170 Identities=42% Similarity=0.659 Sum_probs=144.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
...++|+||+|++++++++.+.+.. +..+..|...+. +.++++||+||||||||+||++||.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 4578999999999999999998875 567777877664 45589999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
.|+|..+..++.+|..|+...|+||||||||.+...+... +......+++++|+..|+++.. ..+++||+|||+++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999999999999999999999999999999998766431 2223345788999999998754 45799999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.||++++| ||++.|.|
T Consensus 166 ~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp GSCGGGGSTTSSCEEEEC
T ss_pred hhchhhcccCcceeEeec
Confidence 99999998 99998875
No 29
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.86 E-value=2.9e-21 Score=207.71 Aligned_cols=170 Identities=41% Similarity=0.639 Sum_probs=141.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 943 e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
....+|++|+|++.+++.+.+.+.+ +.+++.|...+. ..++++||+||||||||++|++||+.++.+|+.++++++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 4467899999999999999988765 666776665553 34578999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
.+.|..++.++.+|+.|....|++|||||||.+...+... +......+++++++..++++.. ..+++||+|||+++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 9999999999999999999899999999999998665431 1223345678889999998753 46799999999999
Q ss_pred CCcHHHHh--hcCCeEEC
Q 001244 1101 DLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1101 ~LD~ALlR--RF~r~I~V 1116 (1116)
.||++++| ||++.+++
T Consensus 162 ~l~~~l~r~~rf~~~i~i 179 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVV 179 (257)
T ss_dssp TSCGGGGSTTSSCEEEEC
T ss_pred hCCHHHcCCCcCCeEEEe
Confidence 99999999 99988764
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=206.78 Aligned_cols=168 Identities=38% Similarity=0.583 Sum_probs=129.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|++|+|++++++.|.+.+.+ +.+++.|...+. .++.++||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 57899999999999999998875 666777766554 4458999999999999999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCc---hhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~---~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
.+..+..++.+|..+....|+||||||||.+.+.+.... ........++.++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888899999999999998999999999999976653311 112234567788888887643 468999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||++++| ||++.+++
T Consensus 158 ld~~l~~~~R~~~~i~i 174 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFI 174 (262)
T ss_dssp GGSGGGSTTSCCEEEEC
T ss_pred cCHHHhcCCcCCeEEEe
Confidence 9999999 99988874
No 31
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.85 E-value=2.1e-21 Score=229.59 Aligned_cols=168 Identities=43% Similarity=0.706 Sum_probs=151.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|++|+|++.+++.|.+.+.+++.++++|...+. .++.++||+||||||||++|++||++++.+|+.++++++.+.|
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 357999999999999999999999999999988764 4558999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcH
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ 1104 (1116)
+|+.+..++.+|..|....|+||||||||.|.+.+.. ...+...+++++|+..|++... ..+++||+|||+++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~-~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS-CCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc-ccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999887654 2335567888999999998753 568999999999999999
Q ss_pred HHHh--hcCCeEEC
Q 001244 1105 AVVR--RLPRRTCV 1116 (1116)
Q Consensus 1105 ALlR--RF~r~I~V 1116 (1116)
+++| ||++.|++
T Consensus 356 al~r~gRf~~~i~i 369 (489)
T 3hu3_A 356 ALRRFGRFDREVDI 369 (489)
T ss_dssp GGGSTTSSCEEEEC
T ss_pred HHhCCCcCceEEEe
Confidence 9999 99988875
No 32
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.81 E-value=1.4e-18 Score=217.86 Aligned_cols=149 Identities=19% Similarity=0.271 Sum_probs=100.8
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc--
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 1023 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk-- 1023 (1116)
.+++|.+.+++.+...+..... ... ...+|..++||+||||||||++|++||+.+ +.+|+.++|+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~---g~~--~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARA---GLK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGG---GCS--CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhc---ccC--CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 5678999999888887763210 000 113455689999999999999999999999 889999999877543
Q ss_pred ---cccchHHH-----HHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC-------CCC
Q 001244 1024 ---WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 1088 (1116)
Q Consensus 1024 ---~~GesEk~-----Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k-------~~~ 1088 (1116)
.+|....+ ...+....+..+.+||||||||.+- ..+++.|+..++...-. +-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH------------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGSC------------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC------------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 22211111 1234444455567999999999772 45677777777743211 124
Q ss_pred CEEEEEEeCCC--------------------------CCCcHHHHhhcCCeE
Q 001244 1089 RVLVLAATNRP--------------------------FDLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1089 kVLVIaTTNrp--------------------------~~LD~ALlRRF~r~I 1114 (1116)
+++||+|||.. ..+.++|+.||+..+
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i 752 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIV 752 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCC
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEE
Confidence 78999999972 346788888987654
No 33
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.80 E-value=1.7e-19 Score=213.55 Aligned_cols=169 Identities=39% Similarity=0.626 Sum_probs=144.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
..++|++++|+++++..+.+.+.. +..+..|...+. +.++++||+||||||||+||++||.+++.+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 478999999999999999998865 566677766654 445789999999999999999999999999999999999988
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
+.|.....++.+|+.++...|+||||||||.+...+... ..+.....++++++..|++... ...++||++||+|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 999988999999999998899999999999997665421 2234456778999999998753 467999999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||++++| ||++.|.|
T Consensus 182 LD~aLlr~gRfdr~i~i 198 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAI 198 (499)
T ss_dssp SCTTTSSTTSSCCEEEC
T ss_pred cCcccccccccceEEec
Confidence 9999999 99998875
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.79 E-value=5.3e-20 Score=203.55 Aligned_cols=135 Identities=21% Similarity=0.252 Sum_probs=101.3
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHH----hcCCCeEEEEccccccc
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A----~k~sPsIIfIDEID~Ll 1056 (1116)
.++++++||+||||||||+||++||++++.+|+.++++++.+.|.|..+..++++|..| ++..|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 34568999999999999999999999999999999999999999999999999999999 57789999999999998
Q ss_pred cCCCCCch-hHHHHHHHHHHHHHhcCCC---------cCCCCCEEEEEEeCCCCCCcHHHHh--hcCCeEE
Q 001244 1057 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRTC 1115 (1116)
Q Consensus 1057 g~R~~~~~-~~~lr~IlneLL~~Ldgl~---------~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r~I~ 1115 (1116)
+.+..... ....+.+.+.|+..|++.. .....+++||+|||+++.||++++| ||++.|+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~ 183 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW 183 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe
Confidence 75442211 1123467788888887543 1134679999999999999999998 9988775
No 35
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.79 E-value=3.3e-21 Score=207.97 Aligned_cols=173 Identities=39% Similarity=0.598 Sum_probs=137.7
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc
Q 001244 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1116)
Q Consensus 941 ~~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL 1020 (1116)
+..+..+|++|+|++.+++.+.+.+.. +.+++.|...+. .++.++||+||||||||+||++||++++.+|+.+++..+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 345578899999999999999998775 677887776553 345789999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchh---HHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC
Q 001244 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH---EAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1116)
Q Consensus 1021 ~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~---~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN 1097 (1116)
...+.|..+..++.+|..+....|+||||||||.|...+...+.. .....++++|+..+++... ...+++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn 159 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATN 159 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBS
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecC
Confidence 888888887788899999999899999999999997654321100 0112345677777777643 345699999999
Q ss_pred CCCCCcHHHHh--hcCCeEEC
Q 001244 1098 RPFDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1098 rp~~LD~ALlR--RF~r~I~V 1116 (1116)
.++.||++++| ||+..|++
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i 180 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLV 180 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBC
T ss_pred CchhcCHhHcCCCCCCeEEEe
Confidence 99999999999 99877653
No 36
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.78 E-value=9.2e-19 Score=187.95 Aligned_cols=171 Identities=39% Similarity=0.613 Sum_probs=138.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc
Q 001244 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1116)
Q Consensus 942 ~e~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~ 1021 (1116)
..+.++|++++|+++++.++.+.+.. +..+..+...++. .++|++|+||||||||+|+++||..++.+++.+++..+.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~-~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34578999999999999999987765 4556666665543 446899999999999999999999999999999998888
Q ss_pred cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1022 sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
..+.+...+.+..+|+.+....|+++||||||.+...+... .......+++++++..+++... ...++++++||+|
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 87888888889999999988889999999999987655321 1233446778889999988753 4568999999999
Q ss_pred CCCcHHHHh--hcCCeEEC
Q 001244 1100 FDLDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1100 ~~LD~ALlR--RF~r~I~V 1116 (1116)
+.||++++| ||++.|+|
T Consensus 165 ~~ld~~l~r~~rf~~~i~i 183 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAI 183 (254)
T ss_dssp GGSCGGGGSTTSSCEEEEC
T ss_pred hhCCHHHcCCCcCCeEEee
Confidence 999999999 89988875
No 37
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.75 E-value=1.6e-18 Score=216.15 Aligned_cols=168 Identities=42% Similarity=0.706 Sum_probs=150.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
.++|++|+|++.+++.|.+.+.+++.++++|...++ .+..++||+||||||||+||++||..++.+|+.+++.++.+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 689999999999999999999999999999988774 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcH
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ 1104 (1116)
.|+.+..++.+|+.+....|++|||||||.+++.+... ..+..++++++|+..+++... ...++||+|||+++.||+
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhcc--cccEEEecccCCchhcCH
Confidence 99999999999999999999999999999998776542 234557888899999998764 467999999999999999
Q ss_pred HHHh--hcCCeEEC
Q 001244 1105 AVVR--RLPRRTCV 1116 (1116)
Q Consensus 1105 ALlR--RF~r~I~V 1116 (1116)
++.+ ||++.|.+
T Consensus 356 al~r~gRf~~~i~i 369 (806)
T 1ypw_A 356 ALRRFGRFDREVDI 369 (806)
T ss_dssp TTTSTTSSCEEECC
T ss_pred HHhccccccccccc
Confidence 9999 99887653
No 38
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.75 E-value=1.3e-17 Score=181.88 Aligned_cols=169 Identities=39% Similarity=0.620 Sum_probs=137.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc
Q 001244 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1116)
Q Consensus 944 ~~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk 1023 (1116)
+.++|++++|++++++++...+.. +..+..+...++. .+++++|+||||||||+|+++||..++.+++.+++..+...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 478999999999999999987765 4455666655543 34679999999999999999999999999999999888777
Q ss_pred cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC--chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCC
Q 001244 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1116)
Q Consensus 1024 ~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~--~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~ 1101 (1116)
+.+.....+..+|+.+....|+++||||||.+...+... .........+++++..+++... ...++++++||+|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 778888889999999998889999999999887554321 1123446677888889988753 456899999999999
Q ss_pred CcHHHHh--hcCCeEEC
Q 001244 1102 LDEAVVR--RLPRRTCV 1116 (1116)
Q Consensus 1102 LD~ALlR--RF~r~I~V 1116 (1116)
||++++| ||++.|+|
T Consensus 191 ld~~l~r~~rf~~~i~i 207 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAI 207 (278)
T ss_dssp SCHHHHSTTSSCCEEEC
T ss_pred CCHhHcCCCcCCeEEEe
Confidence 9999999 99998875
No 39
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.73 E-value=1.8e-17 Score=167.04 Aligned_cols=108 Identities=25% Similarity=0.384 Sum_probs=98.0
Q ss_pred CCceeeecccCCCCceeEecceEEEeccCccceeecCCC---------CCccceEEEEeecC-CcceEEEEEecCcceEE
Q 001244 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENG-GPSGALLEITGGKGEVE 201 (1116)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~---------~s~~~C~l~~~~~~-g~~~a~Le~~~~~G~v~ 201 (1116)
.+||+|+++...++++.|....|+|||+..||+.|+|+. +|..||+|.....+ +....+|+|.|+||| |
T Consensus 28 ~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNGT-~ 106 (149)
T 1gxc_A 28 APWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT-F 106 (149)
T ss_dssp -CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCE-E
T ss_pred CeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCCe-E
Confidence 499999999999999999999999999999999999995 99999999987542 334689999999999 8
Q ss_pred ECCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001244 202 VNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1116)
Q Consensus 202 vNg~~~~k~~~~~L~~GdEi~f~~~~~~ayifq~l~~~~ 240 (1116)
|||+++.++..+.|+.||+|.|+.....+|+|+++..++
T Consensus 107 VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 107 VNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp ETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred ECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 999999999999999999999999988999999987665
No 40
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.69 E-value=2e-18 Score=202.13 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=120.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC--CeeeEEecccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS 1022 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~seL~s 1022 (1116)
...|++++|++++++.+..++... ..+ ..+++++||+||||||||++|+++|++++ ++|+.++++++.+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~-------~~~--~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI-------KSK--KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH-------HTT--CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhchhhccCHHHHHHHHHHHHHHH-------HhC--CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 557899999999999988877532 122 23557999999999999999999999998 9999999999999
Q ss_pred ccccchHHHHHHHHHHH---hcCCCeEEEEccccccccCCCCCchhH---HHH---------------HHHHHHHHHhcC
Q 001244 1023 KWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHE---AMR---------------KMKNEFMVNWDG 1081 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A---~k~sPsIIfIDEID~Llg~R~~~~~~~---~lr---------------~IlneLL~~Ldg 1081 (1116)
+|.|+.+. ++++|..| +...|+||||||||.+++.|....... ... ++.++++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999988 99999999 788899999999999998875432111 111 122335555542
Q ss_pred CCcCCCCCEEEEEEeCCCCCCcHHHHh--hcCC
Q 001244 1082 LRTKDKERVLVLAATNRPFDLDEAVVR--RLPR 1112 (1116)
Q Consensus 1082 l~~k~~~kVLVIaTTNrp~~LD~ALlR--RF~r 1112 (1116)
.....+..++|+||||+++.+|++++| ||++
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~ 215 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDL 215 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSC
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCc
Confidence 222224457777999999999999987 9987
No 41
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.68 E-value=7.1e-17 Score=155.66 Aligned_cols=105 Identities=27% Similarity=0.465 Sum_probs=92.8
Q ss_pred CCceeeecccC--CCCceeEecceEEEeccCccceeecCC-CCCccceEEEEeecCCcceEEEEEecCcceEEECCeecC
Q 001244 132 IPWARLISQCS--QNSHLSMTGAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 208 (1116)
Q Consensus 132 ~pW~rL~s~~~--~~p~~~i~~~~~t~G~~~~cd~~l~d~-~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~ 208 (1116)
.|||+|+++.. ..+.+.+....++|||+..||+.|.|. .+|..||+|....++|. .+|+|.|+||| ||||+++.
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~--~~l~D~S~NGt-~vng~~l~ 78 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQ--VTLEDTSTSGT-VINKLKVV 78 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCC--EEEEECSSSCC-CCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCe--EEEEECCcCCc-EECCEEcC
Confidence 49999999975 566899999999999999999999885 89999999998644554 78999899999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC-----CeeEEeeecCcc
Q 001244 209 KDSQVVLRGGDELVFSPSG-----KHSYIFQQLSDD 239 (1116)
Q Consensus 209 k~~~~~L~~GdEi~f~~~~-----~~ayifq~l~~~ 239 (1116)
++..+.|+.||+|.|+... +++|+|+++..+
T Consensus 79 ~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 79 KKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114 (116)
T ss_dssp CSSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC-
T ss_pred CCCcEECCCCCEEEEeccCCCCCceEEEEEEccccc
Confidence 9999999999999999875 789999998654
No 42
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=179.33 Aligned_cols=218 Identities=23% Similarity=0.321 Sum_probs=163.9
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhc-CCeEEEE
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-SARLLIV 525 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f-~a~LL~l 525 (1116)
+.-+++|+++..+ +..|..|.++...+++++++.+ .....++.|||+||+| +++++||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~iLL~GppG--tGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPG--TGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGGSC---TTCCCCSEEEEESSSS--SCHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHHHh---CCCCCCceEEEECCCC--ccHHHHHHHHHHHcCCCcEEEE
Confidence 3457899999888 9999999999988999988754 2234468999999999 99999999999999 8888777
Q ss_pred ecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCce
Q 001244 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1116)
Q Consensus 526 Ds~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1116)
+...+.+
T Consensus 78 ~~~~l~~------------------------------------------------------------------------- 84 (322)
T 1xwi_A 78 SSSDLVS------------------------------------------------------------------------- 84 (322)
T ss_dssp ECCSSCC-------------------------------------------------------------------------
T ss_pred EhHHHHh-------------------------------------------------------------------------
Confidence 7654433
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchh
Q 001244 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1116)
Q Consensus 606 ~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~ 685 (1116)
+|+|.
T Consensus 85 ~~~g~--------------------------------------------------------------------------- 89 (322)
T 1xwi_A 85 KWLGE--------------------------------------------------------------------------- 89 (322)
T ss_dssp SSCCS---------------------------------------------------------------------------
T ss_pred hhhhH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred hHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcC---CCCEEEEeeccCCCcccccC
Q 001244 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKS 754 (1116)
Q Consensus 686 ~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L---~g~VviIgS~~~~d~~~~~~ 754 (1116)
.+..++.+|+.+.. .+|+||||||+|.+... ..++.+.|...|+.+ .++|+|||++|+++.
T Consensus 90 ~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~----- 161 (322)
T 1xwi_A 90 SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV----- 161 (322)
T ss_dssp CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT-----
T ss_pred HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc-----
Confidence 12256777777766 88999999999995432 124556677777776 458999999996654
Q ss_pred CCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhccc
Q 001244 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 834 (1116)
Q Consensus 755 ~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~ 834 (1116)
||++ +.++|...|.|++|+.+++...|+.++..
T Consensus 162 -----------------ld~a---------------------l~rRf~~~i~i~~P~~~~r~~il~~~l~~--------- 194 (322)
T 1xwi_A 162 -----------------LDSA---------------------IRRRFEKRIYIPLPEPHARAAMFKLHLGT--------- 194 (322)
T ss_dssp -----------------SCHH---------------------HHHTCCEEEECCCCCHHHHHHHHHHHHTT---------
T ss_pred -----------------CCHH---------------------HHhhcCeEEEeCCcCHHHHHHHHHHHHhc---------
Confidence 5543 55588889999999988887666644321
Q ss_pred chhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 835 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 835 nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
....+...+++.|+..+.+|++++|..||+.|+..++.+.
T Consensus 195 ---------~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 195 ---------TQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp ---------CCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0112345678889999999999999999999998888654
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.62 E-value=1.4e-15 Score=172.66 Aligned_cols=229 Identities=22% Similarity=0.282 Sum_probs=160.6
Q ss_pred HHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHH
Q 001244 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1116)
Q Consensus 435 ~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKAL 514 (1116)
+++.+... +..+.-.++|+++..+ +..|..|..+...+++++++.+. ....++.|||+||+| +++++|||||
T Consensus 33 ~~~~~~~~-~~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppG--tGKT~la~al 104 (355)
T 2qp9_X 33 LRGALSSA-ILSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAV 104 (355)
T ss_dssp ---------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTT--SCHHHHHHHH
T ss_pred HHHHHhhh-hcccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCC--CcHHHHHHHH
Confidence 34444433 3345668999998777 89999999999889999877643 234567899999999 9999999999
Q ss_pred HhhcCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCccccccc
Q 001244 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1116)
Q Consensus 515 A~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1116)
|++++.+++.++...+.+
T Consensus 105 a~~~~~~~~~v~~~~l~~-------------------------------------------------------------- 122 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLVS-------------------------------------------------------------- 122 (355)
T ss_dssp HHHHTCEEEEEEHHHHHS--------------------------------------------------------------
T ss_pred HHHhCCCEEEeeHHHHhh--------------------------------------------------------------
Confidence 999999998887544322
Q ss_pred CcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCccccccc
Q 001244 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1116)
Q Consensus 595 ~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~ 674 (1116)
+|+|.
T Consensus 123 -----------~~~g~---------------------------------------------------------------- 127 (355)
T 2qp9_X 123 -----------KWMGE---------------------------------------------------------------- 127 (355)
T ss_dssp -----------CC-------------------------------------------------------------------
T ss_pred -----------hhcch----------------------------------------------------------------
Confidence 11111
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcC---CCCEEEEee
Q 001244 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGS 743 (1116)
Q Consensus 675 ~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~--------~e~~~~lk~~Le~L---~g~VviIgS 743 (1116)
....++.+|+.+.. .+|+||||||+|.+.... .++.+.|...|+.+ ..+|+|||+
T Consensus 128 -----------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 128 -----------SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp -----------CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred -----------HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 12256677777766 789999999999954321 34566677777766 358999999
Q ss_pred ccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHH
Q 001244 744 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1116)
Q Consensus 744 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~ql 823 (1116)
+|.++. ||++ +.++|...|.|++|..+++...|+.++
T Consensus 194 tn~~~~----------------------ld~a---------------------l~rRf~~~i~i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 194 TNIPWQ----------------------LDSA---------------------IRRRFERRIYIPLPDLAARTTMFEINV 230 (355)
T ss_dssp ESCGGG----------------------SCHH---------------------HHHTCCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCccc----------------------CCHH---------------------HHcccCEEEEeCCcCHHHHHHHHHHHH
Confidence 996544 4443 555888899999999988876666443
Q ss_pred hhchhhhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 824 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 824 e~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
..- ...+...+++.|+..+.+|++++|..+|..|+..++.+.
T Consensus 231 ~~~------------------~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 231 GDT------------------PSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp TTS------------------CBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhC------------------CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 210 011345678889999999999999999999999888753
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.61 E-value=6.1e-16 Score=172.69 Aligned_cols=219 Identities=22% Similarity=0.280 Sum_probs=164.6
Q ss_pred CcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 447 ~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
+.-+++|+++..+ +..|..|..+...+++++++.+.. ...++.|||+||+| +++++||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKGN---RKPTSGILLYGPPG--TGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCCTT---CCCCCEEEEECSSS--SCHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHhcC---CCCCCeEEEECCCC--CcHHHHHHHHHHHHCCCEEEEc
Confidence 4457899998887 999999999998899888776542 23467899999999 8999999999999999988886
Q ss_pred cccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCcee
Q 001244 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1116)
Q Consensus 527 s~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 606 (1116)
...+.+ +
T Consensus 84 ~~~l~~-------------------------------------------------------------------------~ 90 (322)
T 3eie_A 84 SSDLVS-------------------------------------------------------------------------K 90 (322)
T ss_dssp HHHHHT-------------------------------------------------------------------------T
T ss_pred hHHHhh-------------------------------------------------------------------------c
Confidence 543322 1
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhh
Q 001244 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1116)
Q Consensus 607 ~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~ 686 (1116)
|+| ..
T Consensus 91 ~~g---------------------------------------------------------------------------~~ 95 (322)
T 3eie_A 91 WMG---------------------------------------------------------------------------ES 95 (322)
T ss_dssp TGG---------------------------------------------------------------------------GH
T ss_pred ccc---------------------------------------------------------------------------hH
Confidence 111 12
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcC---CCCEEEEeeccCCCcccccCC
Q 001244 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKSH 755 (1116)
Q Consensus 687 ~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L---~g~VviIgS~~~~d~~~~~~~ 755 (1116)
...++.+|+.+.. .+|.||||||||.+... ..++.+.|...|+.+ ..+|+|||++|.++.
T Consensus 96 ~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~------ 166 (322)
T 3eie_A 96 EKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ------ 166 (322)
T ss_dssp HHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG------
T ss_pred HHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh------
Confidence 3367778887776 89999999999995442 234566677777765 458999999996544
Q ss_pred CCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccc
Q 001244 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1116)
Q Consensus 756 ~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~n 835 (1116)
||++ +.++|...|.|++|..+++...|+.++..
T Consensus 167 ----------------ld~a---------------------l~~Rf~~~i~~~~p~~~~r~~il~~~~~~---------- 199 (322)
T 3eie_A 167 ----------------LDSA---------------------IRRRFERRIYIPLPDLAARTTMFEINVGD---------- 199 (322)
T ss_dssp ----------------SCHH---------------------HHHHCCEEEECCCCCHHHHHHHHHHHHTT----------
T ss_pred ----------------CCHH---------------------HHcccCeEEEeCCCCHHHHHHHHHHHhcc----------
Confidence 5543 55588888999999988887666644321
Q ss_pred hhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccc
Q 001244 836 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 884 (1116)
Q Consensus 836 Il~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~ 884 (1116)
....+...+++.|+..+.+|++++|..+|..|...++.+..
T Consensus 200 --------~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 200 --------TPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp --------CCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11123455788899999999999999999999998887643
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.59 E-value=4.1e-15 Score=173.79 Aligned_cols=229 Identities=23% Similarity=0.318 Sum_probs=159.1
Q ss_pred HHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHH
Q 001244 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1116)
Q Consensus 435 ~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKAL 514 (1116)
+.+.+.+.|+ .+.-.++|+++..+ +..|..|..+.-.+++++++..- ....++.|||+||+| +++++|||||
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~~---~~~~~~~vLL~GppG--tGKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFTG---KRTPWRGILLFGPPG--TGKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTTTSG---GGCCCSEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHhhc---cCCCCceEEEECCCC--CCHHHHHHHH
Confidence 4444444444 45668999998777 89999999998888988877542 223458999999999 9999999999
Q ss_pred Hhhc-CCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccc
Q 001244 515 AKHF-SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 593 (1116)
Q Consensus 515 A~~f-~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 593 (1116)
|+++ +++++.++...+.+
T Consensus 188 a~~~~~~~~~~v~~~~l~~------------------------------------------------------------- 206 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVS------------------------------------------------------------- 206 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHHh-------------------------------------------------------------
Confidence 9999 88888777654433
Q ss_pred cCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccc
Q 001244 594 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 673 (1116)
Q Consensus 594 ~~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~ 673 (1116)
+|+|...
T Consensus 207 ------------~~~g~~~------------------------------------------------------------- 213 (444)
T 2zan_A 207 ------------KWLGESE------------------------------------------------------------- 213 (444)
T ss_dssp -----------------CC-------------------------------------------------------------
T ss_pred ------------hhcchHH-------------------------------------------------------------
Confidence 1222100
Q ss_pred cccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcC---CCCEEEEe
Q 001244 674 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL---PSNVVVIG 742 (1116)
Q Consensus 674 ~~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L---~g~VviIg 742 (1116)
..++.+|+.+.. .+|.||||||||.+... ..++.+.|...|+.+ ..+|+|||
T Consensus 214 --------------~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 214 --------------KLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp --------------CTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred --------------HHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 035566776665 78999999999995432 123445555555554 45899999
Q ss_pred eccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHH
Q 001244 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1116)
Q Consensus 743 S~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~q 822 (1116)
++|.++. ||++ +.++|...|.|++|..+++...|..+
T Consensus 277 atn~~~~----------------------ld~a---------------------l~rRf~~~i~i~~P~~~~r~~il~~~ 313 (444)
T 2zan_A 277 ATNIPWV----------------------LDSA---------------------IRRRFEKRIYIPLPEAHARAAMFRLH 313 (444)
T ss_dssp EESCGGG----------------------SCHH---------------------HHTTCCEEEECCCCCHHHHHHHHHHH
T ss_pred cCCCccc----------------------cCHH---------------------HHhhcceEEEeCCcCHHHHHHHHHHH
Confidence 9996544 5543 55689999999999999888666654
Q ss_pred HhhchhhhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 823 le~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
+..- ...+...+++.|+..+.+|+|++|+.+|..|+..++.+.
T Consensus 314 l~~~------------------~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 314 LGST------------------QNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp HTTS------------------CEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HhcC------------------CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4210 011245678889999999999999999999998888653
No 46
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.59 E-value=1.8e-15 Score=166.00 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=117.7
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCC--CCCCeEEEEECCCCCchHHHHHHHHHHh-------CCeeeEEecccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 1020 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l--~~p~~gILL~GPPGTGKT~LArAIA~el-------g~pfI~Is~seL 1020 (1116)
+|+|++.+++.|.+.+..+.. +..+...++ ..+..++||+||||||||++|+++|+.+ ..+|+.+++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999988876432 333332222 2344689999999999999999999998 348999999999
Q ss_pred ccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC
Q 001244 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1116)
Q Consensus 1021 ~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~ 1100 (1116)
...++|..+..+..+|..+. ++||||||+|.|+..+.... ....+++.|+..++.. ..+++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~~~---~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNERD---YGQEAIEILLQVMENN----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC---C---CTHHHHHHHHHHHHHC----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCccc---ccHHHHHHHHHHHhcC----CCCEEEEEeCChHH
Confidence 99999999988999998884 58999999999986543211 1245566677666653 35789999998653
Q ss_pred -----CCcHHHHhhcCCeEE
Q 001244 1101 -----DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1101 -----~LD~ALlRRF~r~I~ 1115 (1116)
.++++|++||+..|+
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~ 200 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIE 200 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEE
T ss_pred HHHHHhhCHHHHHhCCeEEE
Confidence 357999999977665
No 47
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.59 E-value=4.3e-16 Score=181.80 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=84.3
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc-ccccc-
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 1027 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s-k~~Ge- 1027 (1116)
+|+|++++++.|..++..+.+++.++.......+++++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5899999999999998777666665544332335679999999999999999999999999999999999888 59995
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEE-eCCCCCCcHHH
Q 001244 1028 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA-TNRPFDLDEAV 1106 (1116)
Q Consensus 1028 sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaT-TNrp~~LD~AL 1106 (1116)
.+..++.+|..|.+. +++||++.+... ......++++++|+..||++... ..+ +++ ||+++.||+||
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~----~~~~~e~rvl~~LL~~~dg~~~~--~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRAR----AEDVAEERILDALLPPAKNQWGE--VEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhcc----chhhHHHHHHHHHHHHhhccccc--ccc--ccccccCHHHHHHHH
Confidence 799999999999874 458998877432 22345579999999999998642 233 555 99999999999
Q ss_pred Hh--hcCCeEEC
Q 001244 1107 VR--RLPRRTCV 1116 (1116)
Q Consensus 1107 lR--RF~r~I~V 1116 (1116)
+| ||++.|+|
T Consensus 164 ~rggr~D~~i~i 175 (444)
T 1g41_A 164 REGQLDDKEIEI 175 (444)
T ss_dssp ------------
T ss_pred HcCCCcceEEEE
Confidence 99 99999876
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.58 E-value=2.9e-15 Score=162.45 Aligned_cols=132 Identities=24% Similarity=0.285 Sum_probs=100.4
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccc-cccchHHHHHHHHHHHhcCCCeEEEEccccccccCCC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk-~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~ 1060 (1116)
.+..++||+||||||||++|+++|+.++.+|+.+++++.... ..+.....++.+|..++...++||||||||.|++.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 455799999999999999999999999999999988763211 1122335788899999888899999999999986654
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcH-HHHhhcCCeEEC
Q 001244 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRTCV 1116 (1116)
Q Consensus 1061 ~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~-ALlRRF~r~I~V 1116 (1116)
... .....+++.|...+++... ...+++||+|||.++.|++ .+++||...|.+
T Consensus 142 ~~~--~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~ 195 (272)
T 1d2n_A 142 IGP--RFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV 195 (272)
T ss_dssp TTT--BCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC
T ss_pred CCh--hHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcC
Confidence 211 1124556666666666543 3567999999999998888 677899887764
No 49
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.57 E-value=4.1e-15 Score=162.22 Aligned_cols=167 Identities=24% Similarity=0.363 Sum_probs=115.4
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc-ccccch
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 1028 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s-k~~Ges 1028 (1116)
+++|++++++.+...+..+..+..+........++.++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4789999999998887643222211110000123468999999999999999999999999999999998865 566543
Q ss_pred -HHHHHHHHHHHh-----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCc------CCCCCEEEEEE-
Q 001244 1029 -EKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAA- 1095 (1116)
Q Consensus 1029 -Ek~Ir~lF~~A~-----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~------k~~~kVLVIaT- 1095 (1116)
...++.+|..+. ...++||||||||.+.......+.......+.+.|+..+++... ....+++||++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 455666665331 12368999999999976654333333334456777777776421 01346888888
Q ss_pred ---eCCCCCCcHHHHhhcCCeEEC
Q 001244 1096 ---TNRPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1096 ---TNrp~~LD~ALlRRF~r~I~V 1116 (1116)
++.+..++++|++||+..|.+
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~ 199 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVEL 199 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEEC
T ss_pred CcccCCcccCCHHHHhhCCceEEc
Confidence 457788999999999976654
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.55 E-value=1.5e-14 Score=171.13 Aligned_cols=269 Identities=19% Similarity=0.256 Sum_probs=170.8
Q ss_pred cccccccccccchhHHHHHHhhhhhhcccccccc-ccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001244 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAK-YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1116)
Q Consensus 450 ~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k-~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1116)
.++|+++... +..+..|.......+++++..+ ++ ...++.|||+||+| +++++||||+|++.+.+++.++..
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g---~~~~~~vLL~GppG--tGKT~lAraia~~~~~~fv~vn~~ 272 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCEEEEECSTT--SSHHHHHHHHHHHCSSEEEEEEHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCcEEEECcCC--CCHHHHHHHHHHHhCCCEEEEEch
Confidence 3678887766 7888888888877788877653 32 23467799999999 999999999999999999888854
Q ss_pred cCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeee
Q 001244 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1116)
Q Consensus 529 ~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~v 608 (1116)
.+.. +|+
T Consensus 273 ~l~~-------------------------------------------------------------------------~~~ 279 (489)
T 3hu3_A 273 EIMS-------------------------------------------------------------------------KLA 279 (489)
T ss_dssp HHHT-------------------------------------------------------------------------SCT
T ss_pred Hhhh-------------------------------------------------------------------------hhc
Confidence 3322 011
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHH
Q 001244 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1116)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~ 688 (1116)
| ....
T Consensus 280 g---------------------------------------------------------------------------~~~~ 284 (489)
T 3hu3_A 280 G---------------------------------------------------------------------------ESES 284 (489)
T ss_dssp T---------------------------------------------------------------------------HHHH
T ss_pred c---------------------------------------------------------------------------hhHH
Confidence 1 0112
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCCC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 758 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~~--------~e~~~~lk~~Le~L--~g~VviIgS~~~~d~~~~~~~~~~ 758 (1116)
.+..+|+.+.. ..|+||||||||.+.... .++.+.|...|+.+ ..+|+||+++|+++.
T Consensus 285 ~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~--------- 352 (489)
T 3hu3_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS--------- 352 (489)
T ss_dssp HHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG---------
T ss_pred HHHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc---------
Confidence 45566666655 789999999999955432 24566677777765 448999999996544
Q ss_pred ceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhhcccch
Q 001244 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 836 (1116)
Q Consensus 759 ~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nI 836 (1116)
||++ +.+ +|...|.|++|..+++...|..++.
T Consensus 353 -------------Ld~a---------------------l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~------------ 386 (489)
T 3hu3_A 353 -------------IDPA---------------------LRRFGRFDREVDIGIPDATGRLEILQIHTK------------ 386 (489)
T ss_dssp -------------BCGG---------------------GGSTTSSCEEEECCCCCHHHHHHHHHHHTT------------
T ss_pred -------------cCHH---------------------HhCCCcCceEEEeCCCCHHHHHHHHHHHHh------------
Confidence 5543 333 7888999999999998855543221
Q ss_pred hhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccc---cchhhhhHHHHHhhhh
Q 001244 837 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIS---TESIMYGLNILQGIQS 912 (1116)
Q Consensus 837 l~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS---~ESLkvglsdFq~aln 912 (1116)
...+ .+.+++.++..+.+|+++++..+|..|...++.+....+..... .+. .+.+.+..++|..++.
T Consensus 387 --------~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~-~~~~~~~~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 387 --------NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE-TIDAEVMNSLAVTMDDFRWALS 457 (489)
T ss_dssp --------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS-SCCHHHHHHCCBCHHHHHHHHT
T ss_pred --------cCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc-ccchhhcccCcCCHHHHHHHHH
Confidence 1122 55688999999999999999999999999998876554322111 111 1233455677766665
Q ss_pred hhhhhhhhhhhccChhHHHHHHhcCCCCCCCCCCCcccccCcHHH
Q 001244 913 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENV 957 (1116)
Q Consensus 913 e~K~L~~~lk~~v~~~e~e~~ll~~iIp~~e~~vtfddIgGldev 957 (1116)
+.++..- .+ + ...-+.++|+||||....
T Consensus 458 ~~~ps~~--re--------------~-~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 458 QSNPSAL--RE--------------T-VVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp SHHHHHH--HG--------------G-GC----------------
T ss_pred hCCchhh--hc--------------c-cccCCCCCHHHcCCCccc
Confidence 5443210 00 1 112237999999998754
No 51
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.54 E-value=1.2e-14 Score=145.62 Aligned_cols=145 Identities=21% Similarity=0.370 Sum_probs=105.0
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
+|+++.|.+...+.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 578899999988888776631 123589999999999999999999997 78899998
Q ss_pred cccccc--ccccchHHHHHHHHHHHhcC-CCeEEEEccccccccCCC-CCchhHHHHHHHHHHHHHhcCCCcCCCCCEEE
Q 001244 1017 MSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1116)
Q Consensus 1017 ~seL~s--k~~GesEk~Ir~lF~~A~k~-sPsIIfIDEID~Llg~R~-~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLV 1092 (1116)
+..+.. .+.+..+..+..+|..+... .+.||||||++.+.+.+. ...... +.+.|...++ ..+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~----~~~~l~~~~~------~~~~~i 155 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD----AGNILKPMLA------RGELRC 155 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC----THHHHHHHHH------TTCSCE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH----HHHHHHHHHh------cCCeeE
Confidence 877652 34556666788888877665 678999999999975543 111111 1222222222 246789
Q ss_pred EEEeCCCC-----CCcHHHHhhcCCeEEC
Q 001244 1093 LAATNRPF-----DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1093 IaTTNrp~-----~LD~ALlRRF~r~I~V 1116 (1116)
|++||.+. .+++++++||.. |.|
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~R~~~-i~i 183 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALERRFQQ-ILV 183 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHHHEEE-EEC
T ss_pred EEecCHHHHHHHHhccHHHHHhcCc-ccC
Confidence 99999765 689999999984 543
No 52
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=158.97 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=149.0
Q ss_pred ccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001244 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1116)
Q Consensus 449 i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1116)
-+|+|+++.-+ ++.|..|..+...++++++..+.. +|.. ++.|||+||+| .++++|+||||...+..++.++..
T Consensus 5 ~~~~~~di~g~--~~~~~~l~~~i~~~~~~~~~l~~~-~l~~-~~GvlL~Gp~G--tGKTtLakala~~~~~~~i~i~g~ 78 (274)
T 2x8a_A 5 PNVTWADIGAL--EDIREELTMAILAPVRNPDQFKAL-GLVT-PAGVLLAGPPG--CGKTLLAKAVANESGLNFISVKGP 78 (274)
T ss_dssp -------CCHH--HHHHHHHHHHHTHHHHSHHHHHHT-TCCC-CSEEEEESSTT--SCHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHc-CCCC-CCeEEEECCCC--CcHHHHHHHHHHHcCCCEEEEEcH
Confidence 36899998888 999999999888888887765322 2222 34499999999 999999999999998887777643
Q ss_pred cCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeee
Q 001244 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1116)
Q Consensus 529 ~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~v 608 (1116)
.+..
T Consensus 79 ~l~~---------------------------------------------------------------------------- 82 (274)
T 2x8a_A 79 ELLN---------------------------------------------------------------------------- 82 (274)
T ss_dssp TTCS----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 3322
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHH
Q 001244 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1116)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~ 688 (1116)
.|....+.
T Consensus 83 ------------------------------------------------------------------------~~~~~~~~ 90 (274)
T 2x8a_A 83 ------------------------------------------------------------------------MYVGESER 90 (274)
T ss_dssp ------------------------------------------------------------------------STTHHHHH
T ss_pred ------------------------------------------------------------------------hhhhHHHH
Confidence 01111223
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccCCCCC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHPGG 758 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~~~~~~~ 758 (1116)
.+..+|+.+.. ..|+|+||||+|.+... ..+..+.+...|+.... .+++++++|+++.
T Consensus 91 ~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~--------- 158 (274)
T 2x8a_A 91 AVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI--------- 158 (274)
T ss_dssp HHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG---------
T ss_pred HHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh---------
Confidence 45666666544 78999999999984431 13455666667765533 7888899997665
Q ss_pred ceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhhcccch
Q 001244 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 836 (1116)
Q Consensus 759 ~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nI 836 (1116)
||+| +.+ +|...|.|.+|+.+++...|+.++...
T Consensus 159 -------------LD~a---------------------l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~---------- 194 (274)
T 2x8a_A 159 -------------IDPA---------------------ILRPGRLDKTLFVGLPPPADRLAILKTITKNG---------- 194 (274)
T ss_dssp -------------SCHH---------------------HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT----------
T ss_pred -------------CCHh---------------------hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc----------
Confidence 6664 333 788888888888888876666443210
Q ss_pred hhhhhhhhcCCC-CCCCchhhhcccc--ccchhhHHHHHHHhhhccccccc
Q 001244 837 ISIRSVLSRNGL-DCVDLESLCIKDQ--TLTTEGVEKIVGWALSHHFMHCS 884 (1116)
Q Consensus 837 l~Iht~l~~~~l-ecvDLeeLai~dk--~LsgadIEkIV~sAaS~aL~r~~ 884 (1116)
....+ .++|++.|+..+. +|+|+||+.+|+.|...++.+..
T Consensus 195 -------~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 195 -------TKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp -------BTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred -------cCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 01112 5678999998765 99999999999999998887543
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.53 E-value=4e-14 Score=156.75 Aligned_cols=215 Identities=20% Similarity=0.314 Sum_probs=158.6
Q ss_pred cccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 448 ~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
.-.++|+++-.+ +..|..|.+..-..+++++.. +++. ..++.|||+||+| +++++||||||++.+.+++.++
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~---~~~~~vLL~Gp~G--tGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFGM---TPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCC---CCCSEEEEECSSS--SSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcCC---CCCceEEEECCCC--cCHHHHHHHHHHHhCCCEEEEE
Confidence 446899998776 999999999988788887654 3332 3467899999999 9999999999999999988876
Q ss_pred cccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCcee
Q 001244 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1116)
Q Consensus 527 s~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 606 (1116)
...+.. +
T Consensus 82 ~~~l~~-------------------------------------------------------------------------~ 88 (301)
T 3cf0_A 82 GPELLT-------------------------------------------------------------------------M 88 (301)
T ss_dssp HHHHHH-------------------------------------------------------------------------H
T ss_pred hHHHHh-------------------------------------------------------------------------h
Confidence 433211 1
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhh
Q 001244 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1116)
Q Consensus 607 ~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~ 686 (1116)
|+|..
T Consensus 89 ~~g~~--------------------------------------------------------------------------- 93 (301)
T 3cf0_A 89 WFGES--------------------------------------------------------------------------- 93 (301)
T ss_dssp HHTTC---------------------------------------------------------------------------
T ss_pred hcCch---------------------------------------------------------------------------
Confidence 12210
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-----------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCccccc
Q 001244 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEK 753 (1116)
Q Consensus 687 ~~~i~~L~evl~~esk~~P~ILfidDie~~l~~-----------~~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~~ 753 (1116)
...+..+|+.+.. ..|+||||||+|.+... ..+..+.|...|+.+. .+|+|||++|+++.
T Consensus 94 ~~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~---- 166 (301)
T 3cf0_A 94 EANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI---- 166 (301)
T ss_dssp TTHHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG----
T ss_pred HHHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc----
Confidence 0035566776665 78999999999995431 1345677888888764 48999999997654
Q ss_pred CCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
||++ +.+ +|...|.|++|..+++...|+..+..
T Consensus 167 ------------------ld~a---------------------l~r~gRf~~~i~i~~p~~~~r~~il~~~l~~------ 201 (301)
T 3cf0_A 167 ------------------IDPA---------------------ILRPGRLDQLIYIPLPDEKSRVAILKANLRK------ 201 (301)
T ss_dssp ------------------SCGG---------------------GGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------
T ss_pred ------------------cChH---------------------HhcCCccceEEecCCcCHHHHHHHHHHHHcc------
Confidence 5554 333 78889999999999987665543321
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
.++ ..++++.++..+.+++|+++..+|..|+..++.+.
T Consensus 202 --------------~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 202 --------------SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp --------------SCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112 45688899999999999999999999998887654
No 54
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.53 E-value=8.1e-15 Score=165.94 Aligned_cols=131 Identities=22% Similarity=0.361 Sum_probs=95.3
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhh-cCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc-ccccch
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFC-KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 1028 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~-~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s-k~~Ges 1028 (1116)
|+|++.+++.+...+.....+..... ......+..++||+||||||||++|++||+.++.+|+.++++++.. .|+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 68999999999888753322211110 1122335679999999999999999999999999999999998874 477875
Q ss_pred -HHHHHHHHHHH----hcCCCeEEEEccccccccCCCCCc--hhHHHHHHHHHHHHHhcC
Q 001244 1029 -EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDG 1081 (1116)
Q Consensus 1029 -Ek~Ir~lF~~A----~k~sPsIIfIDEID~Llg~R~~~~--~~~~lr~IlneLL~~Ldg 1081 (1116)
+..+..+|..+ ....++||||||||.+...+.... .......+++.|+..|++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 56778888776 344578999999999986654432 112224578888888884
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.51 E-value=4.6e-14 Score=141.12 Aligned_cols=145 Identities=21% Similarity=0.360 Sum_probs=103.1
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEE
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~I 1015 (1116)
..|+++.|.++..+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 3578899999988888876541 123589999999999999999999997 7899999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhc-CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEE
Q 001244 1016 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1116)
Q Consensus 1016 s~seL~--sk~~GesEk~Ir~lF~~A~k-~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLV 1092 (1116)
++..+. ..+.+.....+..+|..+.+ ..+.||||||+|.+...+....... ...++..++ + ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPAL---A------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHHH---H------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHhh---c------cCCeEE
Confidence 988775 34556667778888886643 4578999999999975432211111 122222222 1 246788
Q ss_pred EEEeCCCC-----CCcHHHHhhcCCeEE
Q 001244 1093 LAATNRPF-----DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1093 IaTTNrp~-----~LD~ALlRRF~r~I~ 1115 (1116)
|++||.+. .+++++++||. .|.
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~ 181 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVF 181 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEE
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eee
Confidence 99998876 78999999997 354
No 56
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.50 E-value=1e-13 Score=139.96 Aligned_cols=109 Identities=24% Similarity=0.396 Sum_probs=87.8
Q ss_pred CCCCCCCceeeecccC-CCCceeEe-cceEEEeccCccceeecCCCCCccceEEEEee---cC-CcceEEEEEecCcceE
Q 001244 127 KVGSRIPWARLISQCS-QNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE---NG-GPSGALLEITGGKGEV 200 (1116)
Q Consensus 127 ~~~~~~pW~rL~s~~~-~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~---~~-g~~~a~Le~~~~~G~v 200 (1116)
......||++|+.+.. ....+.+. +..|+|||+..||+.|.|+.+|..||+|.... .+ .....+|+|.|+|||
T Consensus 11 ~~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT- 89 (151)
T 2jqj_A 11 PSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGT- 89 (151)
T ss_dssp CSSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCE-
T ss_pred CCCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCe-
Confidence 3456679999999876 34477887 48999999999999999999999999999831 10 122488999999999
Q ss_pred EECCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcc
Q 001244 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDD 239 (1116)
Q Consensus 201 ~vNg~~~~k~~~~~L~~GdEi~f~~~~~~ayifq~l~~~ 239 (1116)
||||+++.++ .+.|+.||+|.|+.. ..|+|.-....
T Consensus 90 ~VNg~~i~~~-~~~L~~GD~I~lG~~--~~~~f~~~~~~ 125 (151)
T 2jqj_A 90 FINGNRLVKK-DYILKNGDRIVFGKS--CSFLFKYASSS 125 (151)
T ss_dssp EETTEECCSS-CEEECSSEEEEETTT--EEEEEEECSSC
T ss_pred EECCEEcCCC-ceECCCCCEEEECCC--cEEEEEEcCCC
Confidence 7999999999 999999999999873 35666644433
No 57
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.50 E-value=1e-13 Score=136.04 Aligned_cols=100 Identities=25% Similarity=0.286 Sum_probs=89.3
Q ss_pred CCceeeecccCCCCceeEecc-------------eEEEeccCccceeecCC-CCCccceEEEEeecCCcceEEEEEecCc
Q 001244 132 IPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGK 197 (1116)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~-------------~~t~G~~~~cd~~l~d~-~~s~~~C~l~~~~~~g~~~a~Le~~~~~ 197 (1116)
..||+|.++..++|++.+... .++|||+..||+.|+|+ .+|..||+|...+ +|. .+|+|.|+|
T Consensus 3 ~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~-~g~--~~l~DlS~N 79 (127)
T 1g6g_A 3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDISTN 79 (127)
T ss_dssp EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECT-TSC--EEEEECCSS
T ss_pred ceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECC-CCc--EEEEECCcC
Confidence 479999999999999999877 99999999999999998 5999999999752 343 889999999
Q ss_pred ceEEECCeecCCCceEEeeCCCEEEEccCC---CeeEEeee
Q 001244 198 GEVEVNGNVHPKDSQVVLRGGDELVFSPSG---KHSYIFQQ 235 (1116)
Q Consensus 198 G~v~vNg~~~~k~~~~~L~~GdEi~f~~~~---~~ayifq~ 235 (1116)
|| ||||+++.++..+.|+.||+|.|+... ...|+|+.
T Consensus 80 GT-~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 80 GT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 119 (127)
T ss_dssp CC-EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEE
T ss_pred Ce-EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEe
Confidence 99 799999999999999999999999863 45688874
No 58
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=2.6e-13 Score=147.36 Aligned_cols=232 Identities=20% Similarity=0.270 Sum_probs=166.0
Q ss_pred cccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 448 ~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
.-.++|+++..+ +..+..|.......+++++.. +++. ..++.|||+||+| +++++||||||++++.+++.++
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~ll~G~~G--tGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVGI---EPPKGILLYGPPG--TGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHCC---CCCSEEEEESSSS--SSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 346889998877 999999999888888887655 3331 3466799999999 9999999999999999988887
Q ss_pred cccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCcee
Q 001244 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1116)
Q Consensus 527 s~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~ 606 (1116)
...+.+.
T Consensus 84 ~~~~~~~------------------------------------------------------------------------- 90 (285)
T 3h4m_A 84 GSELVKK------------------------------------------------------------------------- 90 (285)
T ss_dssp GGGGCCC-------------------------------------------------------------------------
T ss_pred hHHHHHh-------------------------------------------------------------------------
Confidence 6544431
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhh
Q 001244 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1116)
Q Consensus 607 ~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~ 686 (1116)
|+| ..
T Consensus 91 ~~~---------------------------------------------------------------------------~~ 95 (285)
T 3h4m_A 91 FIG---------------------------------------------------------------------------EG 95 (285)
T ss_dssp STT---------------------------------------------------------------------------HH
T ss_pred ccc---------------------------------------------------------------------------hH
Confidence 000 11
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------Ch---hhHHHHHHHHhcC--CCCEEEEeeccCCCccccc
Q 001244 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 753 (1116)
Q Consensus 687 ~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~---e~~~~lk~~Le~L--~g~VviIgS~~~~d~~~~~ 753 (1116)
...+..+|+.+.. ..|.||||||+|.+... .. +....+...++.+ .++++||+++|.++.
T Consensus 96 ~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~---- 168 (285)
T 3h4m_A 96 ASLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI---- 168 (285)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG----
T ss_pred HHHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh----
Confidence 2255666676666 78999999999996531 22 3333344445443 348999999995443
Q ss_pred CCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhh
Q 001244 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1116)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk 831 (1116)
||++ +.. +|...+.|++|+.+++...|+..+.
T Consensus 169 ------------------l~~~---------------------l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~------- 202 (285)
T 3h4m_A 169 ------------------LDPA---------------------ILRPGRFDRIIEVPAPDEKGRLEILKIHTR------- 202 (285)
T ss_dssp ------------------BCHH---------------------HHSTTSEEEEEECCCCCHHHHHHHHHHHHT-------
T ss_pred ------------------cCHH---------------------HcCCCcCCeEEEECCCCHHHHHHHHHHHHh-------
Confidence 4432 334 7888999999999999866653321
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHH
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq 908 (1116)
..++ ...+++.++..+.++++++|+.+|..|...++.+. ...|+.+++..++..+.
T Consensus 203 -------------~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~--------~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 203 -------------KMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL--------RDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp -------------TSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--------CSSBCHHHHHHHHHHHH
T ss_pred -------------cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------cCcCCHHHHHHHHHHHH
Confidence 1112 45678899999999999999999999999888733 33467777777766654
No 59
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.49 E-value=4.5e-14 Score=166.46 Aligned_cols=237 Identities=20% Similarity=0.255 Sum_probs=162.2
Q ss_pred cccCCC-cccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 442 GILGPE-NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 442 ~vv~~~-~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
+++..+ ...++|+++-.+ +..|..|..... .+++++.. .++ ...++.|||+||+| +++++||||+|++.+
T Consensus 3 ~~~~~~~~~~~~f~di~G~--~~~~~~l~e~v~-~l~~~~~~~~~g---~~~p~gvLL~GppG--tGKT~Laraia~~~~ 74 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGA--EEAIEELKEVVE-FLKDPSKFNRIG---ARMPKGILLVGPPG--TGKTLLARAVAGEAN 74 (476)
T ss_dssp --CCCCCSCCCCGGGCCSC--HHHHHHHHHHHH-HHHCTHHHHTTT---CCCCSEEEEECCTT--SSHHHHHHHHHHHHT
T ss_pred ceeccCCCCCCCHHHhCCc--HHHHHHHHHHHH-HhhChHHHhhcC---CCCCCeEEEECCCC--CCHHHHHHHHHHHcC
Confidence 345555 789999998777 888888888765 35554322 222 23456799999999 899999999999999
Q ss_pred CeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccc
Q 001244 520 ARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTF 599 (1116)
Q Consensus 520 a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 599 (1116)
++++.++.+.+..
T Consensus 75 ~~f~~is~~~~~~------------------------------------------------------------------- 87 (476)
T 2ce7_A 75 VPFFHISGSDFVE------------------------------------------------------------------- 87 (476)
T ss_dssp CCEEEEEGGGTTT-------------------------------------------------------------------
T ss_pred CCeeeCCHHHHHH-------------------------------------------------------------------
Confidence 9988776433322
Q ss_pred cCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccC
Q 001244 600 KKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDS 679 (1116)
Q Consensus 600 ~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~ 679 (1116)
.|+|.
T Consensus 88 ------~~~g~--------------------------------------------------------------------- 92 (476)
T 2ce7_A 88 ------LFVGV--------------------------------------------------------------------- 92 (476)
T ss_dssp ------CCTTH---------------------------------------------------------------------
T ss_pred ------HHhcc---------------------------------------------------------------------
Confidence 01110
Q ss_pred CCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC-----------hhhHHHHHHHHhcCC--CCEEEEeeccC
Q 001244 680 SLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQ 746 (1116)
Q Consensus 680 s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~-----------~e~~~~lk~~Le~L~--g~VviIgS~~~ 746 (1116)
....+..+|+.+.. ..|+||||||||.+.... .+..+.|...|+.+. .+|+||+++|+
T Consensus 93 ------~~~~~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 93 ------GAARVRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp ------HHHHHHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred ------cHHHHHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 01134556666655 789999999999943211 245677777787664 48999999997
Q ss_pred CCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhh
Q 001244 747 LDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLER 825 (1116)
Q Consensus 747 ~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~ 825 (1116)
++. ||+++ ++ -+|...|.|++|+.+++...|+.++.
T Consensus 164 ~~~----------------------Ld~al--------------------lR~gRFd~~i~i~~Pd~~~R~~Il~~~~~- 200 (476)
T 2ce7_A 164 PDI----------------------LDPAL--------------------LRPGRFDKKIVVDPPDMLGRKKILEIHTR- 200 (476)
T ss_dssp GGG----------------------SCGGG--------------------GSTTSSCEEEECCCCCHHHHHHHHHHHHT-
T ss_pred hhh----------------------hchhh--------------------cccCcceeEeecCCCCHHHHHHHHHHHHH-
Confidence 654 55541 11 26777888999988887655443322
Q ss_pred chhhhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhH
Q 001244 826 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGL 904 (1116)
Q Consensus 826 ~Lpdlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvgl 904 (1116)
...+ ..+|++.++..+.++++++|+.+|..|+..+..+. ...|+.+++..++
T Consensus 201 -------------------~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--------~~~I~~~dl~~al 253 (476)
T 2ce7_A 201 -------------------NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--------RDKITMKDFEEAI 253 (476)
T ss_dssp -------------------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------CSSBCHHHHHHHH
T ss_pred -------------------hCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--------CCeecHHHHHHHH
Confidence 1122 45678899999999999999999999988776522 2346667777666
Q ss_pred HHH
Q 001244 905 NIL 907 (1116)
Q Consensus 905 sdF 907 (1116)
...
T Consensus 254 ~~v 256 (476)
T 2ce7_A 254 DRV 256 (476)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 60
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.48 E-value=4.3e-13 Score=146.65 Aligned_cols=228 Identities=21% Similarity=0.302 Sum_probs=162.7
Q ss_pred HHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHH
Q 001244 436 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 515 (1116)
Q Consensus 436 k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA 515 (1116)
.+.+.+.+++ +.-.++|+++-.+ +..+..|......++.+++... .+...++.|||+||+| +++++||||||
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~G--tGKT~la~~la 75 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPG--NGKTLLARAVA 75 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSS--SCHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCC--CCHHHHHHHHH
Confidence 3445555554 3467899998776 9999999999888888776543 2334578999999999 99999999999
Q ss_pred hhcCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccC
Q 001244 516 KHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSK 595 (1116)
Q Consensus 516 ~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 595 (1116)
++++.+++.++...+.+.
T Consensus 76 ~~~~~~~~~i~~~~l~~~-------------------------------------------------------------- 93 (297)
T 3b9p_A 76 TECSATFLNISAASLTSK-------------------------------------------------------------- 93 (297)
T ss_dssp HHTTCEEEEEESTTTSSS--------------------------------------------------------------
T ss_pred HHhCCCeEEeeHHHHhhc--------------------------------------------------------------
Confidence 999988887765444330
Q ss_pred cccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccc
Q 001244 596 NYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSL 675 (1116)
Q Consensus 596 ~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~ 675 (1116)
|+|.
T Consensus 94 -----------~~~~----------------------------------------------------------------- 97 (297)
T 3b9p_A 94 -----------YVGD----------------------------------------------------------------- 97 (297)
T ss_dssp -----------SCSC-----------------------------------------------------------------
T ss_pred -----------ccch-----------------------------------------------------------------
Confidence 1010
Q ss_pred cccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcCC-----CCEEEEe
Q 001244 676 RLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIG 742 (1116)
Q Consensus 676 ~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L~-----g~VviIg 742 (1116)
....++.+|+.+.. .+|.||||||+|.++.. .....+.|...++.++ .+|+||+
T Consensus 98 ----------~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~ 164 (297)
T 3b9p_A 98 ----------GEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164 (297)
T ss_dssp ----------HHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEE
T ss_pred ----------HHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEe
Confidence 11255666776665 78999999999996542 2345556777777775 3699999
Q ss_pred eccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHH
Q 001244 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1116)
Q Consensus 743 S~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~q 822 (1116)
++|+++. ||++ +.++|...+.+++|..+++...|...
T Consensus 165 ~tn~~~~----------------------l~~~---------------------l~~R~~~~i~~~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 165 ATNRPQE----------------------LDEA---------------------ALRRFTKRVYVSLPDEQTRELLLNRL 201 (297)
T ss_dssp EESCGGG----------------------BCHH---------------------HHHHCCEEEECCCCCHHHHHHHHHHH
T ss_pred ecCChhh----------------------CCHH---------------------HHhhCCeEEEeCCcCHHHHHHHHHHH
Confidence 9996543 4432 45578889999999988887655543
Q ss_pred HhhchhhhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 823 le~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
+..- ...+...+++.|+..+.+++++++..++..|...++.+.
T Consensus 202 ~~~~------------------~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 202 LQKQ------------------GSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp HGGG------------------SCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred HHhc------------------CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3210 012244467778889999999999999999988877643
No 61
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.46 E-value=1.4e-13 Score=158.45 Aligned_cols=109 Identities=25% Similarity=0.389 Sum_probs=99.3
Q ss_pred CCCceeeecccCCCCceeEecceEEEeccCccceeecCCCC---------CccceEEEEe-ecCCcceEEEEEecCcceE
Q 001244 131 RIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRI-ENGGPSGALLEITGGKGEV 200 (1116)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~---------s~~~C~l~~~-~~~g~~~a~Le~~~~~G~v 200 (1116)
..|||+|.+....++.+++....|+|||+..||+.|+|+.+ |..||+|.+. ..++..+++|+|.|+|||
T Consensus 7 ~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt- 85 (419)
T 3i6u_A 7 PAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT- 85 (419)
T ss_dssp CCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE-
T ss_pred CCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc-
Confidence 34999999999999999999999999999999999999986 9999999865 345566799999999999
Q ss_pred EECCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001244 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1116)
Q Consensus 201 ~vNg~~~~k~~~~~L~~GdEi~f~~~~~~ayifq~l~~~~ 240 (1116)
+|||..++|+.+.+|++||+|.|+...+..|+|+++..+.
T Consensus 86 ~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~~ 125 (419)
T 3i6u_A 86 FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 125 (419)
T ss_dssp EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSSC
T ss_pred eECcccccCCCcccCCCCCEeeeeccccceEEEecccccc
Confidence 7999999999999999999999999999999999886543
No 62
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.46 E-value=5.2e-13 Score=148.66 Aligned_cols=142 Identities=21% Similarity=0.299 Sum_probs=102.9
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~ 1025 (1116)
.+|++++|.+..++.+...+..... . ..+..++||+||||||||++|+++|+.++.+|+.++++.+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 4799999999999999988764321 1 123467999999999999999999999999999999876532
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC--------------cCCCCCEE
Q 001244 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--------------TKDKERVL 1091 (1116)
Q Consensus 1026 GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~--------------~k~~~kVL 1091 (1116)
...+..++.. ...+++||||||+.+. ..+.+.|+..++... ..+..+++
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLS------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcC------------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 2333444432 2356899999999883 122333444443321 00112589
Q ss_pred EEEEeCCCCCCcHHHHhhcCCeEEC
Q 001244 1092 VLAATNRPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1092 VIaTTNrp~~LD~ALlRRF~r~I~V 1116 (1116)
||++||+...++++|++||+..+.+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l 181 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRL 181 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred EEEeCCCccccCHHHHhhcCEEeeC
Confidence 9999999999999999999877754
No 63
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.46 E-value=6.6e-14 Score=167.61 Aligned_cols=150 Identities=25% Similarity=0.359 Sum_probs=102.1
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc-----
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----- 1022 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s----- 1022 (1116)
.++++|++++++.+.+.+...... . ..+...+||+||||||||+||++||..++.+|+.+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------K--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------S--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------c--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 456899999999998766532211 1 114468999999999999999999999999999999876543
Q ss_pred ----ccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC-----------CC
Q 001244 1023 ----KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DK 1087 (1116)
Q Consensus 1023 ----k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k-----------~~ 1087 (1116)
.|+|.....+.+.|..+....| ||||||||.+...+.. ...+.|+..|+..... +.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 5666667777888888876665 9999999999644321 2345566666543211 11
Q ss_pred CCEEEEEEeCCCCCCcHHHHhhcCCeEE
Q 001244 1088 ERVLVLAATNRPFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1088 ~kVLVIaTTNrp~~LD~ALlRRF~r~I~ 1115 (1116)
.+++||+|||+++.|+++|++||. .|.
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~~-vi~ 249 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRME-IIN 249 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHEE-EEE
T ss_pred cceEEEeccCccccCCHHHHhhcc-eee
Confidence 568999999999999999999994 454
No 64
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.46 E-value=9.1e-13 Score=149.44 Aligned_cols=225 Identities=16% Similarity=0.246 Sum_probs=159.0
Q ss_pred HHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhh
Q 001244 438 SLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKH 517 (1116)
Q Consensus 438 ~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~ 517 (1116)
.+.+.+++. .-.++|+++-.. +..+..|.......++++++.+. +....+.|||+||+| +++++||||||++
T Consensus 69 ~i~~~i~~~-~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppG--tGKT~la~aia~~ 140 (357)
T 3d8b_A 69 LIMNEIMDH-GPPVNWEDIAGV--EFAKATIKEIVVWPMLRPDIFTG---LRGPPKGILLFGPPG--TGKTLIGKCIASQ 140 (357)
T ss_dssp HHHHHTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSCG---GGSCCSEEEEESSTT--SSHHHHHHHHHHH
T ss_pred HHHhhcccC-CCCCCHHHhCCh--HHHHHHHHHHHHHHhhChHhHhh---ccCCCceEEEECCCC--CCHHHHHHHHHHH
Confidence 344444443 347899997554 88999999988877888776432 235678899999999 9999999999999
Q ss_pred cCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcc
Q 001244 518 FSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNY 597 (1116)
Q Consensus 518 f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 597 (1116)
++.+++.++...+.+.
T Consensus 141 ~~~~~~~i~~~~l~~~---------------------------------------------------------------- 156 (357)
T 3d8b_A 141 SGATFFSISASSLTSK---------------------------------------------------------------- 156 (357)
T ss_dssp TTCEEEEEEGGGGCCS----------------------------------------------------------------
T ss_pred cCCeEEEEehHHhhcc----------------------------------------------------------------
Confidence 9999888876544430
Q ss_pred cccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccc
Q 001244 598 TFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRL 677 (1116)
Q Consensus 598 ~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~ 677 (1116)
|+|
T Consensus 157 ---------~~g-------------------------------------------------------------------- 159 (357)
T 3d8b_A 157 ---------WVG-------------------------------------------------------------------- 159 (357)
T ss_dssp ---------STT--------------------------------------------------------------------
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 101
Q ss_pred cCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcC----CCCEEEEeecc
Q 001244 678 DSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIGSHT 745 (1116)
Q Consensus 678 d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L----~g~VviIgS~~ 745 (1116)
.....+..+|+.+.. .+|.||||||||.+... ..++.+.|...|+.+ ..+|+|||++|
T Consensus 160 -------~~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 160 -------EGEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp -------HHHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred -------hHHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 112255666766655 78999999999995442 124455666677755 35899999999
Q ss_pred CCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhh
Q 001244 746 QLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER 825 (1116)
Q Consensus 746 ~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~ 825 (1116)
.++. ||. .+.++|...+.|++|..+++...+...+..
T Consensus 230 ~~~~----------------------l~~---------------------~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 266 (357)
T 3d8b_A 230 RPQE----------------------IDE---------------------AARRRLVKRLYIPLPEASARKQIVINLMSK 266 (357)
T ss_dssp CGGG----------------------BCH---------------------HHHTTCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred Chhh----------------------CCH---------------------HHHhhCceEEEeCCcCHHHHHHHHHHHHhh
Confidence 5433 333 255688889999999999887655543321
Q ss_pred chhhhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccc
Q 001244 826 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1116)
Q Consensus 826 ~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r 882 (1116)
- ...+...+++.|+..+.+|+++++..||..|...++..
T Consensus 267 ~------------------~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~ 305 (357)
T 3d8b_A 267 E------------------QCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRS 305 (357)
T ss_dssp S------------------CBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred c------------------CCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 01124456778899999999999999999998877653
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.46 E-value=1.9e-12 Score=138.98 Aligned_cols=233 Identities=19% Similarity=0.252 Sum_probs=157.8
Q ss_pred CCCcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEE
Q 001244 445 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (1116)
Q Consensus 445 ~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL 523 (1116)
+.+...++|+++-.+ +..|..|....- .+++++.. +++. ..++.|||+||+| +++++||||||++.+++++
T Consensus 3 ~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 3 TEDQIKTTFADVAGC--DEAKEEVAELVE-YLREPSRFQKLGG---KIPKGVLMVGPPG--TGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp EECSSCCCGGGSCSC--HHHHHHTHHHHH-HHHCGGGC--------CCCCEEEEECCTT--SCHHHHHHHHHHHHTCCEE
T ss_pred CccCCCCCHHHhcCc--HHHHHHHHHHHH-HHhCHHHHHHcCC---CCCCeEEEECcCC--CCHHHHHHHHHHHcCCCEE
Confidence 345678899998877 888888877654 35554322 2222 3356799999999 9999999999999999887
Q ss_pred EEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCC
Q 001244 524 IVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGD 603 (1116)
Q Consensus 524 ~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gd 603 (1116)
.++...+..
T Consensus 75 ~i~~~~~~~----------------------------------------------------------------------- 83 (257)
T 1lv7_A 75 TISGSDFVE----------------------------------------------------------------------- 83 (257)
T ss_dssp EECSCSSTT-----------------------------------------------------------------------
T ss_pred EEeHHHHHH-----------------------------------------------------------------------
Confidence 776443322
Q ss_pred ceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcc
Q 001244 604 RVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGD 683 (1116)
Q Consensus 604 rv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~ 683 (1116)
.|+|.
T Consensus 84 --~~~~~------------------------------------------------------------------------- 88 (257)
T 1lv7_A 84 --MFVGV------------------------------------------------------------------------- 88 (257)
T ss_dssp --SCCCC-------------------------------------------------------------------------
T ss_pred --Hhhhh-------------------------------------------------------------------------
Confidence 00000
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC-----------hhhHHHHHHHHhcCC--CCEEEEeeccCCCcc
Q 001244 684 EVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENLP--SNVVVIGSHTQLDSR 750 (1116)
Q Consensus 684 ~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~~-----------~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~ 750 (1116)
....+..+|+.+.. ..|+||||||+|.+.... .+..+.+...|+.+. .+++||+++|+++.
T Consensus 89 --~~~~~~~~~~~a~~---~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~- 162 (257)
T 1lv7_A 89 --GASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV- 162 (257)
T ss_dssp --CHHHHHHHHHHHHT---TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTT-
T ss_pred --hHHHHHHHHHHHHH---cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchh-
Confidence 01134555665544 789999999999954321 245666777777764 48999999997654
Q ss_pred cccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchh
Q 001244 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVE 828 (1116)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lp 828 (1116)
+|++ +.+ +|...|.|++|..+++...|+..+..
T Consensus 163 ---------------------l~~~---------------------l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--- 197 (257)
T 1lv7_A 163 ---------------------LDPA---------------------LLRPGRFDRQVVVGLPDVRGREQILKVHMRR--- 197 (257)
T ss_dssp ---------------------SCGG---------------------GGSTTSSCEEEECCCCCHHHHHHHHHHHHTT---
T ss_pred ---------------------CCHH---------------------HcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc---
Confidence 5543 222 67889999999988886555433321
Q ss_pred hhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 829 dlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
.++ ...++..++..+.+|++++++.+|..|+..+..+. +..|+.+++..++.+.
T Consensus 198 -----------------~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--------~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 198 -----------------VPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------KRVVSMVEFEKAKDKI 252 (257)
T ss_dssp -----------------SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------CSSBCHHHHHHHHHHH
T ss_pred -----------------CCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------CCcccHHHHHHHHHHH
Confidence 112 34567778999999999999999999988877632 3346666666665554
No 66
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.45 E-value=6.1e-13 Score=152.23 Aligned_cols=229 Identities=21% Similarity=0.290 Sum_probs=162.0
Q ss_pred HHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHH
Q 001244 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1116)
Q Consensus 435 ~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKAL 514 (1116)
+.+.+.+.++.+ .-.++|+++-.. +..+..|.......+.++++.. .+....+.|||+||+| +++++||+|+
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~la~ai 168 (389)
T 3vfd_A 97 LANLIMNEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPG--NGKTMLAKAV 168 (389)
T ss_dssp CCTTGGGTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTT--SCHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 334455556654 357899998776 8899999998888888776643 2334578999999999 9999999999
Q ss_pred HhhcCCeEEEEecccCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCccccccc
Q 001244 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1116)
Q Consensus 515 A~~f~a~LL~lDs~~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1116)
|++++.+++.++...+.+
T Consensus 169 a~~~~~~~~~v~~~~l~~-------------------------------------------------------------- 186 (389)
T 3vfd_A 169 AAESNATFFNISAASLTS-------------------------------------------------------------- 186 (389)
T ss_dssp HHHTTCEEEEECSCCC----------------------------------------------------------------
T ss_pred HHhhcCcEEEeeHHHhhc--------------------------------------------------------------
Confidence 999999998888765554
Q ss_pred CcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCccccccc
Q 001244 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1116)
Q Consensus 595 ~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~ 674 (1116)
+|+|.
T Consensus 187 -----------~~~g~---------------------------------------------------------------- 191 (389)
T 3vfd_A 187 -----------KYVGE---------------------------------------------------------------- 191 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------cccch----------------------------------------------------------------
Confidence 11111
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcC----CCCEEEEe
Q 001244 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL----PSNVVVIG 742 (1116)
Q Consensus 675 ~~~d~s~~~~~~~~~i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e~~~~lk~~Le~L----~g~VviIg 742 (1116)
....++.+|+.+.. .+|.||||||||.++.. ..++.+.|...|+.+ ...|+|||
T Consensus 192 -----------~~~~~~~~~~~a~~---~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 192 -----------GEKLVRALFAVARE---LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp -----------CHHHHHHHHHHHHH---SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred -----------HHHHHHHHHHHHHh---cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 01256677777766 78999999999996442 234444555556544 34799999
Q ss_pred eccCCCcccccCCCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHH
Q 001244 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1116)
Q Consensus 743 S~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~q 822 (1116)
++|.++. ||. .+.++|...|.|++|..+++...|+..
T Consensus 258 atn~~~~----------------------l~~---------------------~l~~R~~~~i~i~~p~~~~r~~il~~~ 294 (389)
T 3vfd_A 258 ATNRPQE----------------------LDE---------------------AVLRRFIKRVYVSLPNEETRLLLLKNL 294 (389)
T ss_dssp EESCGGG----------------------CCH---------------------HHHTTCCEEEECCCCCHHHHHHHHHHH
T ss_pred ecCCchh----------------------cCH---------------------HHHcCcceEEEcCCcCHHHHHHHHHHH
Confidence 9995433 343 355689889999999999998766644
Q ss_pred HhhchhhhhcccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 823 le~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
+.. ....+...+++.|+..+.+++++++..|+..|...++.+.
T Consensus 295 ~~~------------------~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 295 LCK------------------QGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp HTT------------------SCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred HHh------------------cCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 332 0112244467788999999999999999999988877643
No 67
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.44 E-value=1.5e-12 Score=139.05 Aligned_cols=231 Identities=20% Similarity=0.252 Sum_probs=148.0
Q ss_pred cccccccccccchhHHHHHHhhhhhhccccc-cccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001244 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1116)
Q Consensus 450 ~vsf~~FPYylse~tk~~L~~~~~~hLk~~~-~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1116)
+++|+++-.+ ++.|..|...... +++++ +..++. ..++.|||+||+| +++++||||||++++.+++.++..
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g~---~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLGA---KVPKGALLLGPPG--CGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC------C---CCCCEEEEESCTT--SSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcCC---CCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEechH
Confidence 5789998777 8888888876653 44433 223332 4467899999999 999999999999999998888765
Q ss_pred cCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCcccccccCcccccCCCceeee
Q 001244 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1116)
Q Consensus 529 ~l~g~~~ke~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~v 608 (1116)
.+... |.
T Consensus 74 ~~~~~-------------------------------------------------------------------------~~ 80 (262)
T 2qz4_A 74 EFVEV-------------------------------------------------------------------------IG 80 (262)
T ss_dssp TTSSS-------------------------------------------------------------------------ST
T ss_pred HHHhh-------------------------------------------------------------------------cc
Confidence 44320 00
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcCCCCCcccccccccccCCCcchhhHH
Q 001244 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1116)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~~~~~~~~~~~d~s~~~~~~~~ 688 (1116)
| ....
T Consensus 81 ~---------------------------------------------------------------------------~~~~ 85 (262)
T 2qz4_A 81 G---------------------------------------------------------------------------LGAA 85 (262)
T ss_dssp T---------------------------------------------------------------------------HHHH
T ss_pred C---------------------------------------------------------------------------hhHH
Confidence 0 0111
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC------------ChhhHHHHHHHHhcCC--CCEEEEeeccCCCcccccC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG------------NNDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKS 754 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~------------~~e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~~~ 754 (1116)
.++.+|+.+.. ..|.||||||+|.+..+ .....+.|...++.+. .++++|+++|.++.
T Consensus 86 ~~~~~~~~a~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~----- 157 (262)
T 2qz4_A 86 RVRSLFKEARA---RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADI----- 157 (262)
T ss_dssp HHHHHHHHHHH---TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGG-----
T ss_pred HHHHHHHHHHh---cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhh-----
Confidence 45566666665 68999999999995332 2334455666666653 48999999995443
Q ss_pred CCCCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhh-chhhhh
Q 001244 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLER-DVETLK 831 (1116)
Q Consensus 755 ~~~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~-~Lpdlk 831 (1116)
||.+ +.+ +|...+.|++|..+++...|+..+.. ++..
T Consensus 158 -----------------ld~~---------------------l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-- 197 (262)
T 2qz4_A 158 -----------------LDGA---------------------LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-- 197 (262)
T ss_dssp -----------------GGSG---------------------GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB--
T ss_pred -----------------cCHH---------------------HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc--
Confidence 4443 344 78889999999999987766644431 1110
Q ss_pred cccchhhhhhhhhcCCCCCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHH
Q 001244 832 GQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~lecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq 908 (1116)
. ....+..++..+.++++++|..++..|+..++.+ +...|+.+++..++....
T Consensus 198 ---~-------------~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~--------~~~~i~~~d~~~a~~~~~ 250 (262)
T 2qz4_A 198 ---S-------------STFYSQRLAELTPGFSGADIANICNEAALHAARE--------GHTSVHTLNFEYAVERVL 250 (262)
T ss_dssp ---T-------------HHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------------CCBCCHHHHHHHHH
T ss_pred ---c-------------hhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc--------CCCCCCHHHHHHHHHHhc
Confidence 0 0112356788889999999999999998887762 234567777777766653
No 68
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.43 E-value=2.1e-13 Score=154.91 Aligned_cols=162 Identities=22% Similarity=0.303 Sum_probs=102.4
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhh----------------cCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeee
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~----------------~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI 1013 (1116)
.++|++.+++.|..++.....+..... ..+...+..++||+||||||||++|++||+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 468999999999887743322222100 0112334568999999999999999999999999999
Q ss_pred EEeccccc-cccccch-HHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhH--HHHHHHHHHHHHhcCCC--
Q 001244 1014 NISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHE--AMRKMKNEFMVNWDGLR-- 1083 (1116)
Q Consensus 1014 ~Is~seL~-sk~~Ges-Ek~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~--~lr~IlneLL~~Ldgl~-- 1083 (1116)
.+++..+. ..|+|.. +..+..+|..+. ...++||||||||.+...+....... ....+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 4566654 455666665432 23578999999999975533211100 11136677777777531
Q ss_pred --c-------------CCCCCEEEEEEeCCCCCCcHHHHhhcCC
Q 001244 1084 --T-------------KDKERVLVLAATNRPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1084 --~-------------k~~~kVLVIaTTNrp~~LD~ALlRRF~r 1112 (1116)
. -...++++|+||| .+.|++++.+||..
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~R~~~ 224 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKKRTTQ 224 (376)
T ss_dssp ---------------CEECTTCEEEEEEC-CTTHHHHTTTSCSS
T ss_pred cccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHHHhcc
Confidence 0 0124578889988 67899999999863
No 69
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.36 E-value=2.4e-12 Score=144.64 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=97.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC--CeeeEEecccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS 1022 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~seL~s 1022 (1116)
..+|++++|.+..++.+..++... ..+ ..+..++||+||||||||++|+++|+.++ .+|+.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~-------~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMI-------REG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH-------HTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHHH-------HcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 345999999999988876555421 122 22347899999999999999999999996 4888888776443
Q ss_pred ccccc-------------------------------------------------hHHHHHHHHHHHhc---------CCC
Q 001244 1023 KWFGE-------------------------------------------------GEKYVKAVFSLASK---------IAP 1044 (1116)
Q Consensus 1023 k~~Ge-------------------------------------------------sEk~Ir~lF~~A~k---------~sP 1044 (1116)
.+.+. ....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 23344555544432 126
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEe-----------CCCCCCcHHHHhhcCC
Q 001244 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-----------NRPFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1045 sIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTT-----------Nrp~~LD~ALlRRF~r 1112 (1116)
+||||||||.|. ...++.|+..++.. ..+++++++. |.++.|+++|++||..
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~ 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE
Confidence 899999999883 24455666666543 2356666654 3578899999999965
No 70
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=126.82 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.9
Q ss_pred ceeEe-cceEEEeccCccceeecCCCCCccceEEEEeec-------CCcceEEEEEe-cCcceEEECCeecCCCceEEee
Q 001244 146 HLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-------GGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLR 216 (1116)
Q Consensus 146 ~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~-------~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~ 216 (1116)
.+.|. ++.|+|||...||+.|+|+.+|..||.|..-.. ......+|+|. |+||| ||||+++.+++.+.|+
T Consensus 34 ~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT-~vNg~ri~~~~~~~L~ 112 (130)
T 4h87_A 34 TRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGT-FLNKTRIPPRTYCRVH 112 (130)
T ss_dssp EEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCE-EETTEECCTTCCEECC
T ss_pred eEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCce-EECCEECCCCceeECC
Confidence 44554 367999999999999999999999999964211 11123778886 78999 7999999999999999
Q ss_pred CCCEEEEccCCCeeEEee
Q 001244 217 GGDELVFSPSGKHSYIFQ 234 (1116)
Q Consensus 217 ~GdEi~f~~~~~~ayifq 234 (1116)
.||+|.|+.+.+ .||||
T Consensus 113 ~GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 113 VGHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp TTCEEEETTCSE-EEEEE
T ss_pred CCCEEEECCceE-EEEEc
Confidence 999999998877 59987
No 71
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.34 E-value=7.9e-13 Score=142.48 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=55.3
Q ss_pred cCCCcccccccccccccchhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeE
Q 001244 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1116)
Q Consensus 444 v~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~L 522 (1116)
++.+...++|+++-.+ +..+..|..... .+++++.. +++. ..++.|||+||+| +++++||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~G--tGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPERYANLGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHHHHHHSC---CCCSCCCCBCSSC--SSHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHHHHHCCC---CCCceEEEECCCC--CcHHHHHHHHHHHhCCCE
Confidence 3567778999998776 888888877654 35554432 3332 2345699999999 999999999999988776
Q ss_pred EEEec
Q 001244 523 LIVDS 527 (1116)
Q Consensus 523 L~lDs 527 (1116)
+.++.
T Consensus 73 ~~v~~ 77 (268)
T 2r62_A 73 FSMGG 77 (268)
T ss_dssp CCCCS
T ss_pred EEech
Confidence 55443
No 72
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.33 E-value=3e-12 Score=141.06 Aligned_cols=144 Identities=24% Similarity=0.364 Sum_probs=99.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
..+|++++|.+..++.+...+..... . ..+..++||+||||||||++|+++|+.++.+|+.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~------~---~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~-- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKA------R---KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHH------H---CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHc------c---CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--
Confidence 34789999999999999887763211 0 123357999999999999999999999999999999876532
Q ss_pred ccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------c-------CCCCCE
Q 001244 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------T-------KDKERV 1090 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~-------k~~~kV 1090 (1116)
...+...|..+ ...+++||||||+.+.. .....|+..++... . ....++
T Consensus 77 ----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 ----PGDLAAILANS-LEEGDILFIDEIHRLSR------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ----HHHHHHHHTTT-CCTTCEEEETTTTSCCH------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ----hHHHHHHHHHh-ccCCCEEEEECCccccc------------chHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 22233333321 13578999999998831 11122222222110 0 011358
Q ss_pred EEEEEeCCCCCCcHHHHhhcCCeEEC
Q 001244 1091 LVLAATNRPFDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1091 LVIaTTNrp~~LD~ALlRRF~r~I~V 1116 (1116)
++|++||++..+++++++||...+.+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHL 165 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEEC
T ss_pred EEEEeCCCcccCCHHHHhcccEEEec
Confidence 89999999999999999999766653
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.32 E-value=1.1e-11 Score=146.87 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=94.8
Q ss_pred CCCeEEEEcchhhhhcC--------Ch---hhHHHHHHHHhcCC--CCEEEEeeccCCCcccccCCCCCceeeccCCcch
Q 001244 703 SSPLIVFVKDIEKSLTG--------NN---DAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQT 769 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~--------~~---e~~~~lk~~Le~L~--g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~ 769 (1116)
..|+||||||||.+... +. +..+.|...|+... ..+++|+++++++.
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~-------------------- 181 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI-------------------- 181 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG--------------------
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh--------------------
Confidence 67999999999994321 22 34455666666553 36899999997654
Q ss_pred hhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhhhhcCCC
Q 001244 770 ALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL 848 (1116)
Q Consensus 770 ~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~l~~~~l 848 (1116)
||+++ ++ -+|...|.|.+|+.+++...|+.++. ...+
T Consensus 182 --LD~aL--------------------lr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--------------------~~~l 219 (499)
T 2dhr_A 182 --LDPAL--------------------LRPGRFDRQIAIDAPDVKGREQILRIHAR--------------------GKPL 219 (499)
T ss_dssp --SCTTT--------------------SSTTSSCCEEECCCCCHHHHHHHHHHTTS--------------------SSCC
T ss_pred --cCccc--------------------ccccccceEEecCCCCHHHHHHHHHHHHh--------------------cCCC
Confidence 66652 11 26777899999988888755543221 1123
Q ss_pred -CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHHH
Q 001244 849 -DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1116)
Q Consensus 849 -ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdFq 908 (1116)
.++++..++..+.+++|++++.+|..|+.++..+ ++..|+.+++..++....
T Consensus 220 ~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~--------~~~~It~~dl~~al~~v~ 272 (499)
T 2dhr_A 220 AEDVDLALLAKRTPGFVGADLENLLNEAALLAARE--------GRRKITMKDLEEAADRVM 272 (499)
T ss_dssp CCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT--------CCSSCCSHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHHHh
Confidence 5678999999999999999999999998877652 233567777777776653
No 74
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.32 E-value=4.9e-12 Score=140.17 Aligned_cols=135 Identities=21% Similarity=0.211 Sum_probs=97.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~ 1024 (1116)
..+|+++.|.+++++.+...+.. + +.+..+|++||||||||++|+++|++++.+|+.++++...
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~----------~---~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK----------G---KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT----------T---CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc----------C---CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 35799999999999999888761 1 2335688889999999999999999999999999987632
Q ss_pred ccchHHHHHHHHHH-HhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1025 FGEGEKYVKAVFSL-ASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1025 ~GesEk~Ir~lF~~-A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
...++..+.. +... .+.||||||+|.+.+ ....+.|+..++.. ..++.||+|||.+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~----~~~~~iI~~~n~~ 146 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAY----SSNCSIIITANNI 146 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHH----GGGCEEEEEESSG
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhC----CCCcEEEEEeCCc
Confidence 2344443333 3221 568999999998831 11223333333332 2457889999999
Q ss_pred CCCcHHHHhhcCCeEE
Q 001244 1100 FDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1100 ~~LD~ALlRRF~r~I~ 1115 (1116)
..+++++++||. .+.
T Consensus 147 ~~l~~~l~sR~~-~i~ 161 (324)
T 3u61_B 147 DGIIKPLQSRCR-VIT 161 (324)
T ss_dssp GGSCTTHHHHSE-EEE
T ss_pred cccCHHHHhhCc-EEE
Confidence 999999999994 443
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.30 E-value=3.3e-12 Score=157.96 Aligned_cols=145 Identities=23% Similarity=0.366 Sum_probs=108.1
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEe
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is 1016 (1116)
.|++++|.++.++.+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 678899999998888776641 133689999999999999999999987 67788888
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1017 ~seL~--sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
+..+. ..+.|..+..++.+|..+....++||||||++.|++.+....... .+.+.| ..+. ...++.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~---~~~~~L----~~~l--~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV---DAANLI----KPLL--SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH---HHHHHH----SSCS--SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH---HHHHHH----HHHH--hCCCeEEEE
Confidence 88776 457788899999999999988899999999999987654422121 122222 2221 235788999
Q ss_pred EeCCC-----CCCcHHHHhhcCCeEE
Q 001244 1095 ATNRP-----FDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1095 TTNrp-----~~LD~ALlRRF~r~I~ 1115 (1116)
+||.+ ..+|++|.|||. .|.
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~ 345 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KID 345 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEE
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEE
Confidence 99864 468899999997 454
No 76
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.30 E-value=7e-12 Score=124.68 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=86.9
Q ss_pred CCCceeeecccCCCCceeEe-cceEEEeccCccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCcceEEECC
Q 001244 131 RIPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1116)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~----~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg 204 (1116)
..+|+ |.........+.+. +..++|||+..||+.|.|+. +|..||+|...+ +|. .+|+|. |+||| ||||
T Consensus 7 ~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vNg 81 (138)
T 2pie_A 7 GRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLNR 81 (138)
T ss_dssp CEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECT-TSC--EEEEECSCSSCE-EETT
T ss_pred CccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcC-CCc--EEEEECCCCCCe-EECC
Confidence 34896 77777777788887 78899999999999999999 999999999743 343 789998 89999 7999
Q ss_pred eecCCCceEEeeCCCEEEEccC----CCeeEEeeecCc
Q 001244 205 NVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQLSD 238 (1116)
Q Consensus 205 ~~~~k~~~~~L~~GdEi~f~~~----~~~ayifq~l~~ 238 (1116)
+++.++..+.|+.||+|.|+.. ....|.|+.+..
T Consensus 82 ~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~~~ 119 (138)
T 2pie_A 82 ARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEE 119 (138)
T ss_dssp EECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEEEE
T ss_pred EEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEecch
Confidence 9999999999999999999985 345677776543
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.30 E-value=2.4e-12 Score=161.70 Aligned_cols=145 Identities=21% Similarity=0.363 Sum_probs=95.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEE
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~I 1015 (1116)
.+|++++|.++.++.+.+.+.. +...++||+||||||||++|+++|+.+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 3678899999888888776641 123579999999999999999999998 8899999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhcC-CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEE
Q 001244 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1116)
Q Consensus 1016 s~seL~--sk~~GesEk~Ir~lF~~A~k~-sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLV 1092 (1116)
+++.+. ..+.|+.+..++.+|..+... .|+||||||++.|.+.+...+... +.+.|...+. ..++.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~----~~~~L~~~l~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVD----AGNMLKPALA------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHH----HHHHHHHHHh------CCCeEE
Confidence 999886 567788899999999999875 689999999999986654322222 2222332222 246789
Q ss_pred EEEeCCCC----CCcHHHHhhcCCeEE
Q 001244 1093 LAATNRPF----DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1093 IaTTNrp~----~LD~ALlRRF~r~I~ 1115 (1116)
|++||.+. .++++|+|||.. |.
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~~-i~ 328 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQP-VY 328 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCCC-EE
T ss_pred EEecCchHHhhhccCHHHHhCCce-EE
Confidence 99998764 589999999985 44
No 78
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.30 E-value=1.6e-11 Score=134.61 Aligned_cols=149 Identities=18% Similarity=0.252 Sum_probs=98.0
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc---
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk--- 1023 (1116)
++.|++.+++.+...+...... .. ...+|...+||+||||||||++|++||+.+ +.+|+.++++.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~---~~--~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG---LK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT---CS--CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC---CC--CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4678999998888877642110 00 113455689999999999999999999998 677999999876432
Q ss_pred --cccchHH-----HHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC-------CCCC
Q 001244 1024 --WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKER 1089 (1116)
Q Consensus 1024 --~~GesEk-----~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k-------~~~k 1089 (1116)
++|.... ....+.........+||||||||.+- ..+.+.|+..++..... +-.+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 2221000 00123333344455899999999882 23445555555432211 1147
Q ss_pred EEEEEEeCC--------------------------CCCCcHHHHhhcCCeEE
Q 001244 1090 VLVLAATNR--------------------------PFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1090 VLVIaTTNr--------------------------p~~LD~ALlRRF~r~I~ 1115 (1116)
++||+|||. ...++++|++||+..+.
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~ 212 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVV 212 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEE
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEE
Confidence 889999998 44688999999987664
No 79
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.30 E-value=1.8e-11 Score=125.26 Aligned_cols=103 Identities=24% Similarity=0.282 Sum_probs=86.9
Q ss_pred CCCCceeeecccCCCCceeEecc-------------eEEEeccCccceeecCC-CCCccceEEEEeecCCcceEEEEEec
Q 001244 130 SRIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITG 195 (1116)
Q Consensus 130 ~~~pW~rL~s~~~~~p~~~i~~~-------------~~t~G~~~~cd~~l~d~-~~s~~~C~l~~~~~~g~~~a~Le~~~ 195 (1116)
....|++|.-..-..+...+.-. .|+|||+..||+.|+|+ .+|..||+|...+ +|. .+|+|.|
T Consensus 29 ~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~-~g~--~~l~DlS 105 (164)
T 1g3g_A 29 GENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDIS 105 (164)
T ss_dssp CSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECS-TTC--EEEEECC
T ss_pred CCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECC-CCC--EEEEECC
Confidence 34579999998877776665543 89999999999999998 5999999999753 344 8899999
Q ss_pred CcceEEECCeecCCCceEEeeCCCEEEEccC---CCeeEEeeec
Q 001244 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPS---GKHSYIFQQL 236 (1116)
Q Consensus 196 ~~G~v~vNg~~~~k~~~~~L~~GdEi~f~~~---~~~ayifq~l 236 (1116)
+||| ||||+++.++..+.|+.||+|.|+.. ....|+|..-
T Consensus 106 ~NGT-~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~ 148 (164)
T 1g3g_A 106 TNGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIN 148 (164)
T ss_dssp SSCE-EETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEEC
T ss_pred CCCe-EECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeC
Confidence 9999 79999999999999999999999987 4567888743
No 80
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.29 E-value=3.9e-11 Score=122.64 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=92.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~se 1019 (1116)
...|+++.|.+..++.+.+.+.. . ...++||+||+|||||++|+++++.+ ...++.+++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER----------K----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT----------T----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 35688999999999999887752 1 11359999999999999999999986 45677787765
Q ss_pred cccccccchHHHHHHHHHHH-h-----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEE
Q 001244 1020 ITSKWFGEGEKYVKAVFSLA-S-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A-~-----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVI 1093 (1116)
.... ..+...+... . ...+.||||||+|.+.. ...+.|+..++.. ..++.+|
T Consensus 79 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~----~~~~~~i 136 (226)
T 2chg_A 79 ERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMY----SKSCRFI 136 (226)
T ss_dssp TTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------HHHHHHHHHHHHT----TTTEEEE
T ss_pred ccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------HHHHHHHHHHHhc----CCCCeEE
Confidence 3221 1222222222 1 24678999999998831 1223344444332 3568899
Q ss_pred EEeCCCCCCcHHHHhhcCCeEE
Q 001244 1094 AATNRPFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1094 aTTNrp~~LD~ALlRRF~r~I~ 1115 (1116)
++||.+..+++++.+||. .+.
T Consensus 137 ~~~~~~~~~~~~l~~r~~-~i~ 157 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCA-VFR 157 (226)
T ss_dssp EEESCGGGSCHHHHTTSE-EEE
T ss_pred EEeCChhhcCHHHHHhCc-eee
Confidence 999999999999999986 443
No 81
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.28 E-value=7e-12 Score=124.13 Aligned_cols=123 Identities=9% Similarity=0.142 Sum_probs=84.9
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 1026 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~G 1026 (1116)
++.|.+...+.+.+.+.... ....+|||+||||||||++|++|++.+ +.+|+ ++++.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 46677777777777665321 122469999999999999999999987 78999 999887554
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC-------
Q 001244 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP------- 1099 (1116)
Q Consensus 1027 esEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp------- 1099 (1116)
......|..+.. ++|||||||.|- ......|+..+.. ...++.||+|||.+
T Consensus 66 ---~~~~~~~~~a~~---g~l~ldei~~l~------------~~~q~~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQG---GTLVLSHPEHLT------------REQQYHLVQLQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHTT---SCEEEECGGGSC------------HHHHHHHHHHHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcCC---cEEEEcChHHCC------------HHHHHHHHHHHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 234556776754 899999999882 1223334444422 23567899999975
Q ss_pred CCCcHHHHhhc
Q 001244 1100 FDLDEAVVRRL 1110 (1116)
Q Consensus 1100 ~~LD~ALlRRF 1110 (1116)
..+.+.+..||
T Consensus 124 ~~~~~~L~~rl 134 (145)
T 3n70_A 124 NHIIAELYYCF 134 (145)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCCHHHHHHh
Confidence 24566666665
No 82
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.27 E-value=4.4e-12 Score=149.10 Aligned_cols=131 Identities=21% Similarity=0.308 Sum_probs=93.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEE
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~I 1015 (1116)
..+++++|.+..++.+.+.+.. ....++||+||||||||++|++||+.+ +.+|+.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3678899999999988877652 123589999999999999999999997 7889999
Q ss_pred eccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEE
Q 001244 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1116)
Q Consensus 1016 s~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaT 1095 (1116)
+++ ..|.|+.+..++.+|..+....+.||||| + . ....+.|+..+ ....+.||++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---~-------~~a~~~L~~~L------~~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A-------IDASNILKPSL------ARGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCT------TSSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---c-------hhHHHHHHHhh------cCCCEEEEec
Confidence 887 66778888889999999998889999999 1 1 01222232222 2357999999
Q ss_pred eCCCC-----CCcHHHHhhcCCeEEC
Q 001244 1096 TNRPF-----DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1096 TNrp~-----~LD~ALlRRF~r~I~V 1116 (1116)
||... .++++++|||.. |.|
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~~-i~v 322 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQP-IQV 322 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEE-EEC
T ss_pred CCHHHHHHHhhcCHHHHHhCcc-cee
Confidence 99887 699999999963 543
No 83
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.27 E-value=1.6e-11 Score=136.44 Aligned_cols=142 Identities=21% Similarity=0.272 Sum_probs=91.8
Q ss_pred CCCccccc-C--cHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 945 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 945 ~vtfddIg-G--ldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
..+|+++. | .......+...+..+ .....++||+||||||||+||++|++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45788886 3 444555555554421 1123579999999999999999999999 8999999998
Q ss_pred ccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC
Q 001244 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1116)
Q Consensus 1019 eL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr 1098 (1116)
++...+.+.........|..... .+.|||||||+.+.+.+ ..+..+..+++.+. .....+||++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 87655444333222233433333 37899999999984321 11222222222221 1234677777777
Q ss_pred CC---CCcHHHHhhcC
Q 001244 1099 PF---DLDEAVVRRLP 1111 (1116)
Q Consensus 1099 p~---~LD~ALlRRF~ 1111 (1116)
+. .+++++++||.
T Consensus 142 ~~~l~~l~~~L~sR~~ 157 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFE 157 (324)
T ss_dssp GGGCTTSCHHHHHHHH
T ss_pred hHHHHHhhhHhhhccc
Confidence 66 68999999996
No 84
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.26 E-value=4.1e-12 Score=141.36 Aligned_cols=144 Identities=18% Similarity=0.272 Sum_probs=85.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC-------e------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------N------ 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~-------p------ 1011 (1116)
..+|+++.|.+.+++.+...+.. ....++||+||||||||++|+++|+.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 56899999999987765433321 01236999999999999999999999862 2
Q ss_pred --------------------eeEEeccccccccccchHHHHHHHHHHHh---------cCCCeEEEEccccccccCCCCC
Q 001244 1012 --------------------FINISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSMLGRRENP 1062 (1116)
Q Consensus 1012 --------------------fI~Is~seL~sk~~GesEk~Ir~lF~~A~---------k~sPsIIfIDEID~Llg~R~~~ 1062 (1116)
++.+........++|... +...|..+. ...++|||||||+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------ 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLE------ 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCC------
Confidence 221111111111122100 111222210 1125899999999883
Q ss_pred chhHHHHHHHHHHHHHhcC---------CCcCCCCCEEEEEEeCCCC-CCcHHHHhhcCCeEEC
Q 001244 1063 GEHEAMRKMKNEFMVNWDG---------LRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1063 ~~~~~lr~IlneLL~~Ldg---------l~~k~~~kVLVIaTTNrp~-~LD~ALlRRF~r~I~V 1116 (1116)
....+.|+..++. .......+++||+|||... .++++|++||..++.|
T Consensus 158 ------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 158 ------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp ------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEEC
T ss_pred ------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEc
Confidence 1222333333322 1111123799999999754 8999999999876654
No 85
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.25 E-value=1.6e-11 Score=143.75 Aligned_cols=127 Identities=27% Similarity=0.439 Sum_probs=91.2
Q ss_pred CCcccccCcHHHH---HHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccccc
Q 001244 946 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1116)
Q Consensus 946 vtfddIgGldevk---~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~s 1022 (1116)
.+|++++|++.++ ..|...+.. +. ..++||+||||||||++|++||+.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 5789999999998 677766652 22 1589999999999999999999999999999987542
Q ss_pred ccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEe--
Q 001244 1023 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTT-- 1096 (1116)
....++.+|..+.. ..+.|||||||+.|.. ...+.|+..++. ..++||++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------~~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------SQQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------HHHHHHHHHHhc------CceEEEecCCC
Confidence 23345566665542 3579999999998832 122334444443 346777766
Q ss_pred CCCCCCcHHHHhhcC
Q 001244 1097 NRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1097 Nrp~~LD~ALlRRF~ 1111 (1116)
|....++++|++||.
T Consensus 144 n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 144 NPSFELNSALLSRAR 158 (447)
T ss_dssp CGGGSSCHHHHTTEE
T ss_pred CcccccCHHHhCcee
Confidence 445689999999986
No 86
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.25 E-value=2.4e-11 Score=120.17 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=84.2
Q ss_pred CCCCCceeeecccCCC---CceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECC
Q 001244 129 GSRIPWARLISQCSQN---SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1116)
Q Consensus 129 ~~~~pW~rL~s~~~~~---p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg 204 (1116)
....|||+|.-+.... ..+.|....++|||...||+.|+|+.+|..||+|.....++. .+|+|. |+||| ||||
T Consensus 19 ~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT-~vNg 95 (132)
T 3va4_A 19 SHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGT-QIVK 95 (132)
T ss_dssp -CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCE-EETT
T ss_pred ccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCe-EECC
Confidence 4456999999887554 367888889999999999999999999999999997644554 678888 78999 7999
Q ss_pred ee--cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001244 205 NV--HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1116)
Q Consensus 205 ~~--~~k~~~~~L~~GdEi~f~~~~~~ayifq~l 236 (1116)
++ +.++..+.|+.||+|.|+. ..+.|..+
T Consensus 96 ~~i~l~~~~~~~L~~GD~I~lG~---~~l~f~~~ 126 (132)
T 3va4_A 96 PPRVLPPGVSHRLRDQELILFAD---FPCQYHRL 126 (132)
T ss_dssp TTEEECTTCCEECCTTCEEEETT---EEEEEEEC
T ss_pred EEcccCCCCEEECCCCCEEEECC---EEEEEEEC
Confidence 98 6888999999999999964 45566643
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.24 E-value=6.6e-12 Score=165.21 Aligned_cols=154 Identities=21% Similarity=0.252 Sum_probs=110.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHccccC----------hhhhhc------------------CCCCCCCeEEEEECCC
Q 001244 942 SDIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------------------GQLTKPCKGILLFGPP 993 (1116)
Q Consensus 942 ~e~~vtfddIgGldevk~~L~e~V~lpl~~----------pelf~~------------------~~l~~p~~gILL~GPP 993 (1116)
....++|++++|++++++.+.+.+.+++.+ ++.|.. ++ ....+.+||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG-~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGG-LPMGRIVEIYGPE 1091 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSS-EETTSEEEEECST
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCC-CCCCCEEEEEcCC
Confidence 345689999999999999999999998844 455554 22 1223449999999
Q ss_pred CCchHHHHHHHHHHh---CCeeeEEeccccc------------cccccc----hHHHHHHHHHHHhcCCCeEEEEccccc
Q 001244 994 GTGKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1116)
Q Consensus 994 GTGKT~LArAIA~el---g~pfI~Is~seL~------------sk~~Ge----sEk~Ir~lF~~A~k~sPsIIfIDEID~ 1054 (1116)
|||||+||+++|.+. |-+.+.|+..+.. ++|+++ +|+.++.+|..|+...|++||+|+|+.
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~a 1171 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1171 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHh
Confidence 999999999999887 6666777766543 677888 899999999999999999999999999
Q ss_pred cccCCC---CCc--hhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC
Q 001244 1055 MLGRRE---NPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1116)
Q Consensus 1055 Llg~R~---~~~--~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp 1099 (1116)
|.+.+. ..+ +.....+++++++..++++.. ..+|+|| +||+.
T Consensus 1172 l~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~--~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1172 LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLI-FINQI 1218 (1706)
T ss_dssp CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--HTTCEEE-EEECE
T ss_pred cCcccccccccccccccHHHHHHHHHHHHHHhhhc--cCCeEEE-Eeccc
Confidence 987732 111 225567889999999998654 3567777 66654
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.24 E-value=3.7e-12 Score=125.95 Aligned_cols=125 Identities=12% Similarity=0.120 Sum_probs=84.6
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchH
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 1029 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesE 1029 (1116)
+++|.+..++.+.+.+.... ....+|||+||||||||++|++|++.++ +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 46778888888887775321 1124699999999999999999999988 99999998865543
Q ss_pred HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCC-CC----CcH
Q 001244 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDE 1104 (1116)
Q Consensus 1030 k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp-~~----LD~ 1104 (1116)
...+|..+.. ++|||||||.+- .. ....++..++... ..++.||+|||++ .. +++
T Consensus 67 --~~~~~~~a~~---~~l~lDei~~l~-----~~-------~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAEG---GVLYVGDIAQYS-----RN-------IQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTTT---SEEEEEECTTCC-----HH-------HHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCCC---CeEEEeChHHCC-----HH-------HHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccH
Confidence 4667776654 899999999882 11 1222233332211 3567899999865 22 556
Q ss_pred HHHhhcCC
Q 001244 1105 AVVRRLPR 1112 (1116)
Q Consensus 1105 ALlRRF~r 1112 (1116)
.+..||..
T Consensus 127 ~L~~rl~~ 134 (143)
T 3co5_A 127 KLAGLFSE 134 (143)
T ss_dssp HHHHHSSS
T ss_pred HHHHHhcC
Confidence 67777643
No 89
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.22 E-value=1.1e-11 Score=153.66 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=93.7
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEE
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~I 1015 (1116)
..+++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 3578899999999998887652 123589999999999999999999997 7888888
Q ss_pred eccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEE
Q 001244 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1116)
Q Consensus 1016 s~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaT 1095 (1116)
++ ..+|.|+.+..++.+|..+....++||||| . . ....+.|+..+ ....+.+|+|
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~-------~~~~~~L~~~l------~~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A-------IDASNILKPSL------ARGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCT------TSSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c-------hhHHHHHHHHH------hcCCEEEEeC
Confidence 87 456778888899999999999899999999 1 1 11222332222 2457999999
Q ss_pred eCCCC-----CCcHHHHhhcCCeEEC
Q 001244 1096 TNRPF-----DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1096 TNrp~-----~LD~ALlRRF~r~I~V 1116 (1116)
||... .+|++++||| ..|.|
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v 322 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQV 322 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEEC
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEe
Confidence 99988 7999999999 44654
No 90
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.22 E-value=4.8e-11 Score=133.45 Aligned_cols=146 Identities=20% Similarity=0.189 Sum_probs=99.5
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEecc
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 1018 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~s 1018 (1116)
.+++.|.+..++.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+|+.+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 47899999999988876643211 1234689999999999999999999998 8899999987
Q ss_pred ccccc----------------cccc-hHHHHHHHHHHHhcC-CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhc
Q 001244 1019 SITSK----------------WFGE-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1116)
Q Consensus 1019 eL~sk----------------~~Ge-sEk~Ir~lF~~A~k~-sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld 1080 (1116)
..... ..|. ....+..++...... .|.||||||++.+...+. ...++..++..+.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~-------~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG-------GQDLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTT-------HHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCC-------CChHHHhHhhchh
Confidence 54321 1122 223345555555433 478999999998853320 1345555665554
Q ss_pred CCCcCCCCCEEEEEEeCCC---CCCcHHHHhhcCC
Q 001244 1081 GLRTKDKERVLVLAATNRP---FDLDEAVVRRLPR 1112 (1116)
Q Consensus 1081 gl~~k~~~kVLVIaTTNrp---~~LD~ALlRRF~r 1112 (1116)
.... ..++.||++||.+ +.+++.+.+||..
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~ 193 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGE 193 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCC
Confidence 4320 3578999999988 7799999999975
No 91
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=6.3e-11 Score=133.25 Aligned_cols=140 Identities=17% Similarity=0.252 Sum_probs=98.0
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----------CCeeeEEec
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 1017 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----------g~pfI~Is~ 1017 (1116)
+++.|.++.++.+...+..... ...+.++||+||||||||++|+++++++ +.+++.+++
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 6789999999999887753221 1234689999999999999999999998 899999997
Q ss_pred cccc-cc----------c-------ccc-hHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHH-HHHHHH
Q 001244 1018 SSIT-SK----------W-------FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKM-KNEFMV 1077 (1116)
Q Consensus 1018 seL~-sk----------~-------~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~I-lneLL~ 1077 (1116)
.... .. + .+. ....+..++..+....+ ||||||+|.+...... .+ +..|+.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~--------~~~l~~l~~ 160 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGG--------DIVLYQLLR 160 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTS--------HHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCC--------ceeHHHHhc
Confidence 6543 10 0 111 12345556655555444 9999999988533211 22 333332
Q ss_pred HhcCCCcCCCCCEEEEEEeCCC---CCCcHHHHhhcCCeEE
Q 001244 1078 NWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1078 ~Ldgl~~k~~~kVLVIaTTNrp---~~LD~ALlRRF~r~I~ 1115 (1116)
.. .++.||+|||.+ +.+++++++||...|.
T Consensus 161 ~~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~ 193 (384)
T 2qby_B 161 SD--------ANISVIMISNDINVRDYMEPRVLSSLGPSVI 193 (384)
T ss_dssp SS--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEE
T ss_pred CC--------cceEEEEEECCCchHhhhCHHHHhcCCCeEE
Confidence 21 578999999987 6799999999977664
No 92
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.21 E-value=2.4e-11 Score=126.41 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=78.9
Q ss_pred CceeeecccCC--CCceeEecce--EEEeccCccceeecCCCCCccceEEEEee-cCCc----------ceEEEEEecCc
Q 001244 133 PWARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALLEITGGK 197 (1116)
Q Consensus 133 pW~rL~s~~~~--~p~~~i~~~~--~t~G~~~~cd~~l~d~~~s~~~C~l~~~~-~~g~----------~~a~Le~~~~~ 197 (1116)
.|..|.+.... .+.+.|.... |+|||+..||+.|+|+.+|..||.|.... ..|. ...+|+|.|+|
T Consensus 28 ~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStN 107 (182)
T 1qu5_A 28 RFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTN 107 (182)
T ss_dssp CCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSS
T ss_pred cEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcC
Confidence 45555554432 3467777655 99999999999999999999999999764 1221 35799999999
Q ss_pred ceEEECCeecCCCceEEeeCCCEEEEccC--CCeeEEee
Q 001244 198 GEVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQ 234 (1116)
Q Consensus 198 G~v~vNg~~~~k~~~~~L~~GdEi~f~~~--~~~ayifq 234 (1116)
|| ||||+++.++..+.|+.||+|.|+.. |...++|.
T Consensus 108 GT-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 108 VS-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFK 145 (182)
T ss_dssp CC-EETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECC
T ss_pred Ce-EECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEE
Confidence 99 89999999999999999999999433 44455554
No 93
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.19 E-value=7.7e-11 Score=132.40 Aligned_cols=140 Identities=9% Similarity=0.058 Sum_probs=93.5
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh----------CCeeeEEecccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 1020 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el----------g~pfI~Is~seL 1020 (1116)
+.+.++..+.|...+...+. ...+.+++|+||||||||++++++++++ ++.+++++|..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 33445555666555542221 1234689999999999999999999998 467899998765
Q ss_pred ccc----------c------ccchHHHHHHHHHHH--hcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC
Q 001244 1021 TSK----------W------FGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1116)
Q Consensus 1021 ~sk----------~------~GesEk~Ir~lF~~A--~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl 1082 (1116)
.+. + .+.....+..+|... ....+.||||||||.|. .+ .++..|+.+..
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q----~~L~~l~~~~~-- 158 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SE----KILQYFEKWIS-- 158 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CT----HHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cc----hHHHHHHhccc--
Confidence 432 1 133456778888875 45567899999999995 12 34444443321
Q ss_pred CcCCCCCEEEEEEeCCCCCC----cHHHHhhcC-CeEE
Q 001244 1083 RTKDKERVLVLAATNRPFDL----DEAVVRRLP-RRTC 1115 (1116)
Q Consensus 1083 ~~k~~~kVLVIaTTNrp~~L----D~ALlRRF~-r~I~ 1115 (1116)
....++.||+++|..+.. ++++.+||. ++|.
T Consensus 159 --~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~ 194 (318)
T 3te6_A 159 --SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIK 194 (318)
T ss_dssp --CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEE
T ss_pred --ccCCcEEEEEEecCcccchhhcchhhhccCCceEEE
Confidence 135789999999998754 445567886 3443
No 94
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=2.8e-11 Score=143.82 Aligned_cols=113 Identities=25% Similarity=0.296 Sum_probs=78.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccc-cChhhhhcCCCC--CCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPL-QRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl-~~pelf~~~~l~--~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~ 1021 (1116)
..+|++++|.+..++.|.+.+.... ..+..|...+.. .+.+++||+||||||||++|+++|++++++++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3579999999999999998886422 112223322211 2457999999999999999999999999999999998875
Q ss_pred cccccchH-------HHHHHHHHHH-----hcCCCeEEEEcccccccc
Q 001244 1022 SKWFGEGE-------KYVKAVFSLA-----SKIAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1022 sk~~GesE-------k~Ir~lF~~A-----~k~sPsIIfIDEID~Llg 1057 (1116)
..+..... ..+..+|..+ ....+.||||||||.|..
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~ 162 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 162 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch
Confidence 54321110 0122334333 234679999999999964
No 95
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.18 E-value=6.9e-11 Score=114.20 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=78.0
Q ss_pred CCCCCceeeecccCCC--CceeEec-ceEEEecc-CccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEEC
Q 001244 129 GSRIPWARLISQCSQN--SHLSMTG-AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVN 203 (1116)
Q Consensus 129 ~~~~pW~rL~s~~~~~--p~~~i~~-~~~t~G~~-~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vN 203 (1116)
....||.+|.-..... -.+.+.. ..|+|||. ..||+.|+|+.+|..||+|.... +. .+|+|. |+||| |||
T Consensus 7 ~~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~--~~--~~l~Dl~S~nGT-~vn 81 (118)
T 1uht_A 7 GMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS--GN--WVIQDLGSSNGT-LLN 81 (118)
T ss_dssp CCCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS--SS--EEEECCCCSSCC-EES
T ss_pred CCCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC--CE--EEEEECCCCCCe-EEC
Confidence 3445888888765322 3566665 68999999 89999999999999999999753 33 889999 79999 799
Q ss_pred CeecCCCceEEeeCCCEEEEccCC
Q 001244 204 GNVHPKDSQVVLRGGDELVFSPSG 227 (1116)
Q Consensus 204 g~~~~k~~~~~L~~GdEi~f~~~~ 227 (1116)
|+++.++..+.|+.||+|.|+...
T Consensus 82 g~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 82 SNALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SSBCCTTCEEECCTTEEEEETTTE
T ss_pred CEECCCCCeEEcCCCCEEEECCeE
Confidence 999999999999999999997653
No 96
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.18 E-value=3.1e-11 Score=130.12 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=86.0
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEecccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 1022 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~seL~s 1022 (1116)
.+|++++|.+..++.+.+.+..... ...++||+||||||||++|++|++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP------------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC------------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 4788999999888888776653211 124799999999999999999999884 7899999987633
Q ss_pred c-----cccchHHH-------HHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC-------C
Q 001244 1023 K-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------R 1083 (1116)
Q Consensus 1023 k-----~~GesEk~-------Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl-------~ 1083 (1116)
. ++|..... ....|..+ ..++||||||+.+. ..+...|+..++.. .
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP------------MMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC------------HHHHHHHHHHHHHCEECCCCC-
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC------------HHHHHHHHHHHHhCCeecCCCc
Confidence 2 12211100 11234333 34899999999883 12223333333321 0
Q ss_pred cCCCCCEEEEEEeCCC-------CCCcHHHHhhcCC
Q 001244 1084 TKDKERVLVLAATNRP-------FDLDEAVVRRLPR 1112 (1116)
Q Consensus 1084 ~k~~~kVLVIaTTNrp-------~~LD~ALlRRF~r 1112 (1116)
.....++.||+|||.+ ..+++++.+||..
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~ 171 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF 171 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC
Confidence 1112468899999985 2478999999963
No 97
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.18 E-value=1.1e-11 Score=137.90 Aligned_cols=139 Identities=23% Similarity=0.216 Sum_probs=87.4
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccc--cccc
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWF 1025 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~--sk~~ 1025 (1116)
+.++.|.+++++.+...+.. + .++||+||||||||+||+++|+.++.+|+.+.+.... ..+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------~------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------G------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------T------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------C------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 35688999988888766541 1 3799999999999999999999999999998874211 1111
Q ss_pred cchHH-HHHHHHHHHhcCC---CeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhc-------CCCcCCCCCEEEEE
Q 001244 1026 GEGEK-YVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRTKDKERVLVLA 1094 (1116)
Q Consensus 1026 GesEk-~Ir~lF~~A~k~s---PsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld-------gl~~k~~~kVLVIa 1094 (1116)
|.... .....|. .... .+|||||||+.+- ....+.|+..++ +.....+.+++||+
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccCC------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 11000 0000000 0111 2799999999872 122233333332 21222245788999
Q ss_pred EeCCCC-----CCcHHHHhhcCCeEEC
Q 001244 1095 ATNRPF-----DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1095 TTNrp~-----~LD~ALlRRF~r~I~V 1116 (1116)
|+|..+ .|++++++||...+.|
T Consensus 156 t~np~~~~~~~~l~~~l~~Rf~~~i~i 182 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVDRFMMKIHL 182 (331)
T ss_dssp EECTTCCSCCCCCCHHHHTTSSEEEEC
T ss_pred ecCCCcccCcccCCHHHHhheeEEEEc
Confidence 999543 3999999999866654
No 98
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.16 E-value=4.4e-10 Score=120.43 Aligned_cols=127 Identities=21% Similarity=0.323 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------C---hhhHHHHHHHHhcCCC--CEEEEeeccCCCcccccCCC
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------N---NDAYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHP 756 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~~--------~---~e~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~~~~~ 756 (1116)
+..+|+.+.. ..|.|+||||+|.+... . .+..+.+...|+.... .+++++++++++.
T Consensus 97 i~~~~~~~~~---~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~------- 166 (254)
T 1ixz_A 97 VRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI------- 166 (254)
T ss_dssp HHHHHHHHTT---SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG-------
T ss_pred HHHHHHHHHh---cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh-------
Confidence 4445555433 67999999999984321 1 2234455555554432 5778888886544
Q ss_pred CCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhh-ccccccccccCCchHHHHHHHHHHHhhchhhhhcccc
Q 001244 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQIS-RLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1116)
Q Consensus 757 ~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~-klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~n 835 (1116)
||+++ ++ -+|...|.|++|+.+++...|+.+.. .
T Consensus 167 ---------------ld~~l--------------------~r~~rf~~~i~i~~p~~~~r~~il~~~~~-~--------- 201 (254)
T 1ixz_A 167 ---------------LDPAL--------------------LRPGRFDRQIAIDAPDVKGREQILRIHAR-G--------- 201 (254)
T ss_dssp ---------------SCGGG--------------------GSTTSSCEEEECCSCCHHHHHHHHHHHHT-T---------
T ss_pred ---------------CCHHH--------------------cCCCcCCeEEeeCCcCHHHHHHHHHHHHc-C---------
Confidence 66641 11 27889999999999999876653321 1
Q ss_pred hhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 836 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 836 Il~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
..+ ..+++..++..+.++++++++.+|..|+.++..
T Consensus 202 ----------~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 202 ----------KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 238 (254)
T ss_dssp ----------SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 112 456788899999999999999999999887765
No 99
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.16 E-value=3.9e-10 Score=116.17 Aligned_cols=130 Identities=25% Similarity=0.313 Sum_probs=90.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCee-------------
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 1012 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pf------------- 1012 (1116)
..|+++.|.+..++.|...+.. + +.+..+||+||+|+|||++|+++++.++...
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~----------~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL----------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH----------T---CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4688999999999999887752 1 1224799999999999999999999884321
Q ss_pred -----------eEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHH
Q 001244 1013 -----------INISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1116)
Q Consensus 1013 -----------I~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~ 1077 (1116)
+.++... ......++.++..+. ...+.+|||||+|.+. ...++.|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHHHHHHHH
Confidence 1111110 112334556665543 2347899999999872 233455555
Q ss_pred HhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1078 ~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
.++.. ..++.+|++||.+..+++++++|+
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~ 177 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC 177 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh
Confidence 55542 357899999999999999999986
No 100
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.15 E-value=1.2e-10 Score=118.50 Aligned_cols=100 Identities=20% Similarity=0.302 Sum_probs=77.9
Q ss_pred ceeeecccCC--CCceeEecce--EEEeccCccceeecCCCCCccceEEEEee-cCCc----------ceEEEEEecCcc
Q 001244 134 WARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALLEITGGKG 198 (1116)
Q Consensus 134 W~rL~s~~~~--~p~~~i~~~~--~t~G~~~~cd~~l~d~~~s~~~C~l~~~~-~~g~----------~~a~Le~~~~~G 198 (1116)
|-.|.+.... ...+.|.... |+|||+..||+.|+|+.+|..||+|.... ..|. ...+|+|.|+||
T Consensus 5 ~l~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNG 84 (158)
T 1dmz_A 5 FLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNV 84 (158)
T ss_dssp CEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTC
T ss_pred EEEEEeCCCCccceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCC
Confidence 4555555432 3467777655 99999999999999999999999999764 1121 357999999999
Q ss_pred eEEECCeecCCCceEEeeCCCEEEEccC--CCeeEEee
Q 001244 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQ 234 (1116)
Q Consensus 199 ~v~vNg~~~~k~~~~~L~~GdEi~f~~~--~~~ayifq 234 (1116)
| ||||+++.++..+.|+.||+|.|+.. |...+.|.
T Consensus 85 T-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 85 S-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFK 121 (158)
T ss_dssp C-EETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEE
T ss_pred e-EECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEE
Confidence 9 79999999999999999999999433 33344444
No 101
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.12 E-value=2.5e-10 Score=107.21 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=64.9
Q ss_pred CCceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEE
Q 001244 144 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1116)
Q Consensus 144 ~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdEi~ 222 (1116)
-..+.+....++|||+..||+.++|+.+|..||+|... ++. .+|+|. |+||| ||||+++. .+.|+.||+|.
T Consensus 15 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i~ 86 (100)
T 3po8_A 15 GRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIR 86 (100)
T ss_dssp CCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEE
T ss_pred CcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCE-EECCEECc---eEECCCCCEEE
Confidence 44677778889999999999999999999999999975 333 789999 68999 79999996 68999999999
Q ss_pred Ecc
Q 001244 223 FSP 225 (1116)
Q Consensus 223 f~~ 225 (1116)
|+.
T Consensus 87 iG~ 89 (100)
T 3po8_A 87 LGH 89 (100)
T ss_dssp ETT
T ss_pred ECC
Confidence 975
No 102
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.12 E-value=1.5e-10 Score=114.20 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=70.6
Q ss_pred CceeeecccCCC-CceeEecceEEEeccCccceeecCCCCCccceEEEEee-cCCcceEEEEEe------cCcceEEECC
Q 001244 133 PWARLISQCSQN-SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGPSGALLEIT------GGKGEVEVNG 204 (1116)
Q Consensus 133 pW~rL~s~~~~~-p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~-~~g~~~a~Le~~------~~~G~v~vNg 204 (1116)
+|.-|+-...+- ..+.+....|+|||+..||+.|+|+.+|..||+|.... ..|....+|+|. |+||| ||||
T Consensus 10 ~~~~lvv~~~~~~~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT-~vNg 88 (131)
T 3hx1_A 10 QEHILIILDDAGRREVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL-MING 88 (131)
T ss_dssp CEEEEEEEETTEEEEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCE-EETT
T ss_pred cceEEEEECCCCcEEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCce-EECC
Confidence 344444333322 26777889999999999999999999999999998763 234334889997 99999 7999
Q ss_pred eecCCCceEEeeCCCEEEEccCC
Q 001244 205 NVHPKDSQVVLRGGDELVFSPSG 227 (1116)
Q Consensus 205 ~~~~k~~~~~L~~GdEi~f~~~~ 227 (1116)
+++.+ +.|+.||+|.|+...
T Consensus 89 ~~i~~---~~L~~GD~I~iG~~~ 108 (131)
T 3hx1_A 89 KKVQE---HIIQTGDEIVMGPQV 108 (131)
T ss_dssp EEESE---EECCTTCEEECSTTC
T ss_pred EEeEe---EECCCCCEEEECCEE
Confidence 99986 999999999997664
No 103
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.12 E-value=1.6e-10 Score=134.93 Aligned_cols=142 Identities=15% Similarity=0.282 Sum_probs=88.7
Q ss_pred CCCccccc-Cc--HHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEe
Q 001244 945 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 1016 (1116)
Q Consensus 945 ~vtfddIg-Gl--devk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is 1016 (1116)
..+|+++. |. ......+...... .+ . ..++||+||||||||+||++||+++ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------PG--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------TT--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------CC--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45888876 43 3334444443331 11 1 3579999999999999999999998 88999999
Q ss_pred ccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEe
Q 001244 1017 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1116)
Q Consensus 1017 ~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTT 1096 (1116)
+..+...+.+.........|.......+.|||||||+.+.+.+ ..+..+..+++.+. .....+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8877554433222222224444444468999999999985321 11222222222221 12345666665
Q ss_pred CCCCC---CcHHHHhhcC
Q 001244 1097 NRPFD---LDEAVVRRLP 1111 (1116)
Q Consensus 1097 Nrp~~---LD~ALlRRF~ 1111 (1116)
+.+.. ++++|++||.
T Consensus 236 ~~~~~l~~l~~~L~sR~~ 253 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQ 253 (440)
T ss_dssp SCGGGCSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcc
Confidence 55554 8999999995
No 104
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.11 E-value=1.6e-10 Score=126.12 Aligned_cols=135 Identities=23% Similarity=0.273 Sum_probs=93.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~se 1019 (1116)
..+|+++.|.+.+++.+...+.. + +. .++||+||||||||++|+++|+.+ +.+|+.++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER----------K---NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT----------T---CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC----------C---CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 46799999999999888765531 1 11 249999999999999999999987 45688888876
Q ss_pred cccccccchHHHHHHHHHHH-h-cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC
Q 001244 1020 ITSKWFGEGEKYVKAVFSLA-S-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A-~-k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN 1097 (1116)
..+. ......+..+.... . ...+.||||||+|.+. ....+.|+..++.. ..++.+|++||
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~le~~----~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTMEMY----SKSCRFILSCN 140 (319)
T ss_dssp TTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------HHHHHTTGGGTSSS----SSSEEEEEEES
T ss_pred ccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------HHHHHHHHHHHHhc----CCCCeEEEEeC
Confidence 4321 11122222222111 1 1347899999999883 12344555555442 35788999999
Q ss_pred CCCCCcHHHHhhcC
Q 001244 1098 RPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1098 rp~~LD~ALlRRF~ 1111 (1116)
.+..+.+++.+|+.
T Consensus 141 ~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 141 YVSRIIEPIQSRCA 154 (319)
T ss_dssp CGGGSCHHHHTTCE
T ss_pred ChhhcchHHHhhCe
Confidence 99999999999985
No 105
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.11 E-value=1.5e-10 Score=113.51 Aligned_cols=96 Identities=24% Similarity=0.419 Sum_probs=79.4
Q ss_pred CCCceeeecccC---CCCceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCee
Q 001244 131 RIPWARLISQCS---QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNV 206 (1116)
Q Consensus 131 ~~pW~rL~s~~~---~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~ 206 (1116)
..||++|+-+.. .-..+.|....++|||+..||+.|.|+.+|..||+|...+ +. .+|+|. |+||| +|||++
T Consensus 9 ~~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~--~~--~~l~Dl~S~nGt-~vNg~~ 83 (128)
T 1r21_A 9 MWPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHE--QE--AILHNFSSTNPT-QVNGSV 83 (128)
T ss_dssp CCCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS--SC--EEECCCCSSSCC-EETTEE
T ss_pred CCCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEEC--CE--EEEEECCCCCCE-EECCEE
Confidence 357888887652 2236777789999999999999999999999999999853 33 889999 58999 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001244 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1116)
Q Consensus 207 ~~k~~~~~L~~GdEi~f~~~~~~ayifq~l 236 (1116)
+.+ .+.|+.||+|.|+ ...|.|...
T Consensus 84 i~~--~~~L~~Gd~i~iG---~~~~~~~~~ 108 (128)
T 1r21_A 84 IDE--PVRLKHGDVITII---DRSFRYENE 108 (128)
T ss_dssp CSS--CEECCTTEEEECS---SCEEEEEEC
T ss_pred CCC--cEEcCCCCEEEEC---CEEEEEEeC
Confidence 984 7899999999996 456777754
No 106
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=1.7e-10 Score=128.28 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC------CeeeEEecc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS 1018 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg------~pfI~Is~s 1018 (1116)
..+|+++.|.+++++.+...+.. + .+ .++||+||||||||++|+++|+.++ ..++.++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS----------A---NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC----------T---TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc----------C---CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 35789999999999888876641 1 11 3499999999999999999999863 467888876
Q ss_pred ccccccccchHHHHHHHHHHH-h---------------cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC
Q 001244 1019 SITSKWFGEGEKYVKAVFSLA-S---------------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1116)
Q Consensus 1019 eL~sk~~GesEk~Ir~lF~~A-~---------------k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl 1082 (1116)
+.... ..++..+... . ...+.||||||+|.+.. ...+.|+..++..
T Consensus 99 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 99 DERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------DAQSALRRTMETY 160 (353)
T ss_dssp SCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------HHHHHHHHHHHHT
T ss_pred cccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------HHHHHHHHHHHhc
Confidence 64211 1122111111 1 12456999999998831 2223444444432
Q ss_pred CcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1083 ~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++.+|.+||.+..+++++++|+.
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred ----CCCceEEEEeCchhhCcchhhccCc
Confidence 2356777889999999999999985
No 107
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.10 E-value=1.9e-10 Score=117.07 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=75.6
Q ss_pred ceeEe-cceEEEeccC---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecC
Q 001244 146 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (1116)
Q Consensus 146 ~~~i~-~~~~t~G~~~---------------~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~ 208 (1116)
.+.|. +..|+|||.. .||+.|+++.+|..||+|.....++....+|+|. |+||| ||||+++.
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT-~VNg~ri~ 127 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 127 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCcc-EECCEEcC
Confidence 56665 4789999994 5999999999999999999876666666889999 89999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC---CeeEEee
Q 001244 209 KDSQVVLRGGDELVFSPSG---KHSYIFQ 234 (1116)
Q Consensus 209 k~~~~~L~~GdEi~f~~~~---~~ayifq 234 (1116)
++..+.|+.||+|.|+.+. ..-++|.
T Consensus 128 ~~~~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 128 GARYIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp TTCCEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred CCceEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 9999999999999999874 4666665
No 108
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.10 E-value=6.6e-11 Score=131.60 Aligned_cols=135 Identities=19% Similarity=0.277 Sum_probs=89.7
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc---
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk--- 1023 (1116)
+++|.+..++.+.+.+.... ....+|||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA------------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC------------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh------------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 57788888888877765321 123579999999999999999999976 689999999876432
Q ss_pred --cccch-------HHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC-------cCCC
Q 001244 1024 --WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDK 1087 (1116)
Q Consensus 1024 --~~Ges-------Ek~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~-------~k~~ 1087 (1116)
++|.. .......|..|.. ++||||||+.|. ..+...|+..++... ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~---g~L~LDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADG---GTLFLDEIGDIS------------PLMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTT---SEEEEESCTTCC------------HHHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhcCC---CEEEEeccccCC------------HHHHHHHHHHHhcCEeeecCCccccc
Confidence 22211 0112345666654 899999999883 122333444443321 1113
Q ss_pred CCEEEEEEeCCC-------CCCcHHHHhhcC
Q 001244 1088 ERVLVLAATNRP-------FDLDEAVVRRLP 1111 (1116)
Q Consensus 1088 ~kVLVIaTTNrp-------~~LD~ALlRRF~ 1111 (1116)
.++.||+|||.. ..+++.|..||.
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~ 166 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN 166 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC
Confidence 468999999985 236677888874
No 109
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=4.1e-10 Score=125.67 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=98.4
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh------CCeeeEEecccc
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSI 1020 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el------g~pfI~Is~seL 1020 (1116)
..+++.|.+...+.|.+.+...+. ......++|+||+|||||+|++++++.+ +.+++.+++...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 447899999999888876542211 1233579999999999999999999998 889999997643
Q ss_pred cc------c----------cccc-hHHHHHHHHHHHhcCC-CeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCC
Q 001244 1021 TS------K----------WFGE-GEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1116)
Q Consensus 1021 ~s------k----------~~Ge-sEk~Ir~lF~~A~k~s-PsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl 1082 (1116)
.. . ..+. .......++....... |.||||||++.+...... .++..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhhc
Confidence 21 0 0111 2233455555555443 899999999998643211 2345555555543
Q ss_pred CcCCCCCEEEEEEeCCC---CCCcHHHHhhcCC
Q 001244 1083 RTKDKERVLVLAATNRP---FDLDEAVVRRLPR 1112 (1116)
Q Consensus 1083 ~~k~~~kVLVIaTTNrp---~~LD~ALlRRF~r 1112 (1116)
...++.+|++||.+ ..+++.+.+||..
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~ 189 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSE 189 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTT
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCC
Confidence 24578999999977 4688899999864
No 110
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.09 E-value=5.7e-10 Score=107.47 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCCceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCE
Q 001244 142 SQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDE 220 (1116)
Q Consensus 142 ~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdE 220 (1116)
..-..+.+....++|||...||+.|+|+.+|..||+|... ++. .+|+|. |+||| ||||+++. .+.|+.||+
T Consensus 21 ~~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~ 92 (115)
T 2xt9_B 21 NAGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GGE--FQVVDVGSLNGT-YVNREPVD---SAVLANGDE 92 (115)
T ss_dssp TTTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TTE--EEEEECSCSSCE-EETTEECS---EEEECTTCE
T ss_pred CCCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCE
Confidence 3445677888899999999999999999999999999986 333 889999 79999 79999997 689999999
Q ss_pred EEEccCCCeeEEeeecC
Q 001244 221 LVFSPSGKHSYIFQQLS 237 (1116)
Q Consensus 221 i~f~~~~~~ayifq~l~ 237 (1116)
|.|+. ..+.|+..+
T Consensus 93 i~iG~---~~l~~~~~~ 106 (115)
T 2xt9_B 93 VQIGK---FRLVFLTGP 106 (115)
T ss_dssp EEETT---EEEEEEC--
T ss_pred EEECC---EEEEEEeCC
Confidence 99964 567777544
No 111
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.08 E-value=1.8e-10 Score=127.33 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=33.1
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccC
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l 530 (1116)
.++.|||+|||| +++++||||||++++++++.++.+.+
T Consensus 35 ~p~~lLl~GppG--tGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 35 VPLILGIWGGKG--QGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp CCSEEEEEECTT--SCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred CCeEEEEECCCC--CCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 346789999999 99999999999999999998886443
No 112
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=5.5e-10 Score=122.41 Aligned_cols=135 Identities=24% Similarity=0.313 Sum_probs=90.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC-----CeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg-----~pfI~Is~se 1019 (1116)
..+|++++|.+++++.+...+.. + +. .++||+||||||||++|+++|+.+. ..++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 45789999999999999887752 1 11 3599999999999999999999862 4577777665
Q ss_pred cccccccchHHHHHHHHHHH--hcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC
Q 001244 1020 ITSKWFGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A--~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN 1097 (1116)
..+. ......+....... ....+.||||||+|.+. ....+.|+..++.. ...+.+|++||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~le~~----~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT------------QDAQQALRRTMEMF----SSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC------------HHHHHHHHHHHHHT----TTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC------------HHHHHHHHHHHHhc----CCCCeEEEEeC
Confidence 3221 11111122211100 11347899999999883 12233444444432 34678889999
Q ss_pred CCCCCcHHHHhhcC
Q 001244 1098 RPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1098 rp~~LD~ALlRRF~ 1111 (1116)
.+..+.+++.+|+.
T Consensus 149 ~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA 162 (327)
T ss_dssp CGGGSCHHHHHTEE
T ss_pred CccccCHHHHhhCc
Confidence 99999999999885
No 113
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=4.8e-10 Score=122.64 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=93.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~se 1019 (1116)
..+|+++.|.+..++.|...+.. + +. .++||+||+|+|||++|+++|+.+ +.+++.+++++
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD----------G---NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS----------C---CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 35689999999999999887752 1 12 239999999999999999999986 45678887765
Q ss_pred cccccccchHHHHHHHHHHHh-------cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEE
Q 001244 1020 ITSKWFGEGEKYVKAVFSLAS-------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~-------k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLV 1092 (1116)
..+ ...++.++.... ...+.||||||+|.+.. ...+.|+..++.. ..++.+
T Consensus 83 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~----~~~~~~ 140 (323)
T 1sxj_B 83 DRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMELY----SNSTRF 140 (323)
T ss_dssp CCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHHT----TTTEEE
T ss_pred ccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhcc----CCCceE
Confidence 321 233444444433 22378999999998831 1233444444432 356788
Q ss_pred EEEeCCCCCCcHHHHhhcC
Q 001244 1093 LAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1093 IaTTNrp~~LD~ALlRRF~ 1111 (1116)
|++||.+..+.+++.+|+.
T Consensus 141 il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp EEEESCGGGSCHHHHTTSE
T ss_pred EEEeCChhhchhHHHhhce
Confidence 8899999999999999875
No 114
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.07 E-value=1.5e-10 Score=116.11 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCceeeecccCCCCceeEe-cceEEEeccCccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCcceEEECCe
Q 001244 132 IPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGN 205 (1116)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~----~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~ 205 (1116)
..|+-+ ........+.+. +..|+|||...||+.|+|+. +|..||+|...+ +|. .+|+|. |+||| ||||+
T Consensus 16 ~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vNg~ 90 (145)
T 2csw_A 16 RSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLNRA 90 (145)
T ss_dssp EEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECT-TSC--EEEEBSSCSSCE-EESSC
T ss_pred ccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcC-CCe--EEEEECCCCCCe-EECCE
Confidence 378844 444555566664 57899999999999999999 999999999743 343 789995 88999 79999
Q ss_pred ecCCCceEEeeCCCEEEEccC----CCeeEEeeec
Q 001244 206 VHPKDSQVVLRGGDELVFSPS----GKHSYIFQQL 236 (1116)
Q Consensus 206 ~~~k~~~~~L~~GdEi~f~~~----~~~ayifq~l 236 (1116)
++.+++.+.|+.||+|.|+.. ....|.|+..
T Consensus 91 ~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~~ 125 (145)
T 2csw_A 91 RLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 125 (145)
T ss_dssp BCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCEE
T ss_pred ECCCCccEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 999999999999999999985 2345666544
No 115
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.05 E-value=2.4e-09 Score=116.55 Aligned_cols=126 Identities=22% Similarity=0.335 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhcC--------Chh---hHHHHHHHHhcCCC--CEEEEeeccCCCcccccCCC
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHP 756 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~~--------~~e---~~~~lk~~Le~L~g--~VviIgS~~~~d~~~~~~~~ 756 (1116)
+..+|+.+.. ..|.|+||||+|.+... ..+ ..+.+...|+.... .+++++++++++.
T Consensus 121 i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~------- 190 (278)
T 1iy2_A 121 VRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI------- 190 (278)
T ss_dssp HHHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS-------
T ss_pred HHHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh-------
Confidence 4455555543 68999999999984321 122 33333344443322 4778888886554
Q ss_pred CCceeeccCCcchhhccccCCCcccccccccCcchHHHhhhhc--cccccccccCCchHHHHHHHHHHHhhchhhhhccc
Q 001244 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 834 (1116)
Q Consensus 757 ~~~~~~~~~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~k--lFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~ 834 (1116)
||++ +.+ +|...|.|++|+.+++...|+.+..
T Consensus 191 ---------------ld~~---------------------l~r~~rf~~~i~i~~p~~~~r~~il~~~~~---------- 224 (278)
T 1iy2_A 191 ---------------LDPA---------------------LLRPGRFDRQIAIDAPDVKGREQILRIHAR---------- 224 (278)
T ss_dssp ---------------SCHH---------------------HHSTTSSCCEEECCCCCHHHHHHHHHHHHT----------
T ss_pred ---------------CCHh---------------------HcCCCcCCeEEEeCCcCHHHHHHHHHHHHc----------
Confidence 5653 332 7889999999999998876653321
Q ss_pred chhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhcccc
Q 001244 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1116)
Q Consensus 835 nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~ 881 (1116)
...+ ..+++..++..+.++++++|+.+|..|+..+..
T Consensus 225 ----------~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 225 ----------GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp ----------TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 0112 456788899999999999999999999887765
No 116
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.04 E-value=8.4e-10 Score=110.57 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=70.4
Q ss_pred CCceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEE
Q 001244 144 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1116)
Q Consensus 144 ~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdEi~ 222 (1116)
-..+.+....++|||+..||+.|+|+.+|..||+|... ++. .+|+|. |+||| ||||+++. .+.|+.||+|.
T Consensus 58 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~ 129 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EGE--FEVVDVGSLNGT-YVNREPRN---AQVMQTGDEIQ 129 (143)
T ss_dssp TCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TTE--EEEEESCCSSCC-EETTEECS---EEECCTTEEEE
T ss_pred CeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CCE--EEEEECCCcCCe-EECCEEcc---eEECCCCCEEE
Confidence 34567778899999999999999999999999999984 343 889998 78999 79999997 68999999999
Q ss_pred EccCCCeeEEeeecC
Q 001244 223 FSPSGKHSYIFQQLS 237 (1116)
Q Consensus 223 f~~~~~~ayifq~l~ 237 (1116)
|+ +..+.|+.-+
T Consensus 130 iG---~~~l~f~~~~ 141 (143)
T 2kb3_A 130 IG---KFRLVFLAGP 141 (143)
T ss_dssp ET---TEEEEEEECC
T ss_pred EC---CEEEEEEeCC
Confidence 96 4567776543
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.04 E-value=1.2e-10 Score=138.33 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=81.2
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh--CCeeeEEecc-----cccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMS-----SITS 1022 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el--g~pfI~Is~s-----eL~s 1022 (1116)
.|.|.+++++.+..++.. + .+|||+||||||||+||++||+.+ +.+|..+.+. ++++
T Consensus 23 ~ivGq~~~i~~l~~al~~----------~------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------G------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------T------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------C------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 467888888777655531 1 479999999999999999999998 3466665553 2222
Q ss_pred ccccchHHHHHHHHHHHhc-C--CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhc-------CCCcCCCCCEEE
Q 001244 1023 KWFGEGEKYVKAVFSLASK-I--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRTKDKERVLV 1092 (1116)
Q Consensus 1023 k~~GesEk~Ir~lF~~A~k-~--sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld-------gl~~k~~~kVLV 1092 (1116)
.+.+..... ...|..+.+ . .++|||||||+.+ + ..+.+.|+..|+ |.....+.+ ++
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-----~-------~~~q~~LL~~lee~~v~i~G~~~~~~~~-~i 152 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-----G-------PAILNTLLTAINERQFRNGAHVEKIPMR-LL 152 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-----C-------HHHHHHHHHHHHSSEEECSSSEEECCCC-EE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-----c-------HHHHHHHHHHHHHHhccCCCCcCCcchh-hh
Confidence 222211111 223332222 1 4679999999866 2 233444555543 222222334 46
Q ss_pred EEEeCCCC---CCcHHHHhhcCCeEEC
Q 001244 1093 LAATNRPF---DLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1093 IaTTNrp~---~LD~ALlRRF~r~I~V 1116 (1116)
|+|||... .+.+++++||..+|.|
T Consensus 153 I~ATN~lpe~~~~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYDRMLIRLWL 179 (500)
T ss_dssp EEEESSCCCTTCTTHHHHTTCCEEEEC
T ss_pred hhccccCCCccccHHHHHHHHHHHHHH
Confidence 77777532 2557999999877764
No 118
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.04 E-value=5.8e-11 Score=139.00 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=50.6
Q ss_pred ccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcC--CeEEEEe
Q 001244 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS--ARLLIVD 526 (1116)
Q Consensus 449 i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~--a~LL~lD 526 (1116)
....|+++... ++.|..|....- .++. .. ..++.|||+|||| +++++||||||++++ ++++.++
T Consensus 32 ~~~~~~~iiG~--~~~~~~l~~~~~-~~~~--------~~-~~~~~iLl~GppG--tGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 32 AKQAASGLVGQ--ENAREACGVIVE-LIKS--------KK-MAGRAVLLAGPPG--TGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp BCSEETTEESC--HHHHHHHHHHHH-HHHT--------TC-CTTCEEEEECCTT--SSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred hhhchhhccCH--HHHHHHHHHHHH-HHHh--------CC-CCCCeEEEECCCc--CCHHHHHHHHHHHhCCCceEEEEe
Confidence 45668887665 788776655332 1211 11 1346899999999 999999999999999 8888888
Q ss_pred cccCCC
Q 001244 527 SLLLPG 532 (1116)
Q Consensus 527 s~~l~g 532 (1116)
.+.+++
T Consensus 98 ~~~~~~ 103 (456)
T 2c9o_A 98 GSEVYS 103 (456)
T ss_dssp GGGGCC
T ss_pred HHHHHH
Confidence 766654
No 119
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.04 E-value=1.2e-10 Score=115.93 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=71.4
Q ss_pred ceeEec-ceEEEeccCc-cceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEE
Q 001244 146 HLSMTG-AVFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1116)
Q Consensus 146 ~~~i~~-~~~t~G~~~~-cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdEi~ 222 (1116)
.+.+.. ..|+|||+.. ||+.|.|+.+|..||+|.....++. .+|+|. |+||| ||||+++.++..+.|+.||+|.
T Consensus 48 ~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~Dl~S~NGT-~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 48 KLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKR--VFLIDLNSTHGT-FLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCC--EEEECCSCSSCE-ESSSCEECSSSCCEECTTCCBB
T ss_pred EEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCc--EEEEECCCCCCe-EECCEECCCCccEECCCCCEEE
Confidence 455565 3599999998 9999999999999999997643344 789996 89999 7999999999999999999999
Q ss_pred EccCCCeeEEee
Q 001244 223 FSPSGKHSYIFQ 234 (1116)
Q Consensus 223 f~~~~~~ayifq 234 (1116)
|+.... .|+|+
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987654 35554
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.03 E-value=1.4e-09 Score=113.39 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=82.4
Q ss_pred CCCcccccC---cHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 945 GVTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 945 ~vtfddIgG---ldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
..+|+++.+ ...+.+.+...+.. ....++||+||||||||++|+++++++ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 357888876 34556666655431 123689999999999999999999988 5888999988
Q ss_pred ccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCE-EEEEEeC
Q 001244 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV-LVLAATN 1097 (1116)
Q Consensus 1019 eL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kV-LVIaTTN 1097 (1116)
++...+... +... ..+.+|||||++.+.... ..+..+..+++.+. . ...+ +|++++.
T Consensus 90 ~~~~~~~~~--------~~~~--~~~~vliiDe~~~~~~~~---~~~~~l~~~l~~~~-------~--~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEGL--EQFDLICIDDVDAVAGHP---LWEEAIFDLYNRVA-------E--QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTTG--GGSSEEEEETGGGGTTCH---HHHHHHHHHHHHHH-------H--HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHhc--cCCCEEEEeccccccCCH---HHHHHHHHHHHHHH-------H--cCCCeEEEEcCC
Confidence 765543111 1111 346899999999884211 00222222222221 1 1234 4444444
Q ss_pred CCC---CCcHHHHhhcC--CeEE
Q 001244 1098 RPF---DLDEAVVRRLP--RRTC 1115 (1116)
Q Consensus 1098 rp~---~LD~ALlRRF~--r~I~ 1115 (1116)
.+. .+++++.+||. ..+.
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~ 170 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQ 170 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEE
T ss_pred CHHHHHHhhhhhhhHhhcCceEE
Confidence 443 46699999985 4443
No 121
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=2.4e-09 Score=120.15 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=97.6
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCe--EEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccc
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 1021 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~--gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~ 1021 (1116)
.+++.|.++..+.+...+...+. + .... .++|+||||||||+++++++..+ +..++.+++....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 36799999999998887753211 1 1123 79999999999999999999999 6789999976543
Q ss_pred cc--c--------------ccc-hHHHHHHHHHHHhc-CCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCC
Q 001244 1022 SK--W--------------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1116)
Q Consensus 1022 sk--~--------------~Ge-sEk~Ir~lF~~A~k-~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~ 1083 (1116)
.. . .+. .......+...... ..|.||||||++.+ + ...+..|+..+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~-------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A-------PDILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C-------HHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c-------hHHHHHHHHHHHhCC
Confidence 21 0 011 12222333333322 34789999999987 1 244555555554432
Q ss_pred cCCCCCEEEEEEeCCC---CCCcHHHHhhcCC-eEE
Q 001244 1084 TKDKERVLVLAATNRP---FDLDEAVVRRLPR-RTC 1115 (1116)
Q Consensus 1084 ~k~~~kVLVIaTTNrp---~~LD~ALlRRF~r-~I~ 1115 (1116)
.....++.||++||.+ ..+++.+.+||.. .|.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~ 189 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIR 189 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEE
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEE
Confidence 1111478999999988 6789999999875 443
No 122
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.03 E-value=4.5e-10 Score=111.79 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=68.1
Q ss_pred eEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCC--------CceEEeeCCCEEEE
Q 001244 153 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPK--------DSQVVLRGGDELVF 223 (1116)
Q Consensus 153 ~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k--------~~~~~L~~GdEi~f 223 (1116)
.|+|||+..||+.|+|+.+|..||+|.....++. .+|+|. |+||| ||||+++.+ +..+.|+.||+|.|
T Consensus 33 ~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~DlgS~NGT-~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 33 PVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFK--WELVDMGSLNGT-LVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SEEEESSSSCSEECCCTTSSSEEEEEEEETTTTE--EEEEETTCSSCC-EETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred eEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCE--EEEEECCCCCCE-EECCEECcCcccccccCCceEECCCCCEEEE
Confidence 7999999999999999999999999998754443 799999 79999 799999995 88999999999999
Q ss_pred ccCCCeeEEeeecC
Q 001244 224 SPSGKHSYIFQQLS 237 (1116)
Q Consensus 224 ~~~~~~ayifq~l~ 237 (1116)
+.. .++|..+.
T Consensus 110 G~~---~~~~~~~~ 120 (139)
T 1mzk_A 110 GTT---TKVYVRIS 120 (139)
T ss_dssp SSS---CEEEEEEE
T ss_pred CCE---EEEEEEcC
Confidence 654 55666554
No 123
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.02 E-value=2.2e-09 Score=125.56 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=54.5
Q ss_pred hhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCCC
Q 001244 462 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (1116)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~g 532 (1116)
++.|..|..+++-|+++..+....+ .....+.|||+||+| +++++||||||+.++++++.+|.+.+..
T Consensus 21 e~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppG--tGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 21 ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCC--CCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 8899999999998888766543221 122457899999999 8999999999999999999999866543
No 124
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.02 E-value=1.7e-09 Score=121.08 Aligned_cols=131 Identities=25% Similarity=0.301 Sum_probs=91.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p------------- 1011 (1116)
..+|+++.|.+..++.|...+.. + +.+..+||+||+|||||++|+++|+.++..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~----------~---~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL----------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH----------T---CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh----------C---CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 34688999999999999887752 2 123478999999999999999999988542
Q ss_pred -----------eeEEeccccccccccchHHHHHHHHHHHhc----CCCeEEEEccccccccCCCCCchhHHHHHHHHHHH
Q 001244 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1116)
Q Consensus 1012 -----------fI~Is~seL~sk~~GesEk~Ir~lF~~A~k----~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL 1076 (1116)
++.++...- .....++.++..+.. ..+.||||||+|.+. ....+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~Ll 140 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALL 140 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHHHHHHH
Confidence 233322210 111235566666543 246899999999882 12345556
Q ss_pred HHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1077 ~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
..++.. ..++++|++|+.+..+.+++++|+
T Consensus 141 ~~le~~----~~~~~~Il~~~~~~~l~~~l~sr~ 170 (373)
T 1jr3_A 141 KTLEEP----PEHVKFLLATTDPQKLPVTILSRC 170 (373)
T ss_dssp HHHHSC----CSSEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHhcC----CCceEEEEEeCChHhCcHHHHhhe
Confidence 665543 357888999998889999999987
No 125
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.00 E-value=1.8e-09 Score=110.31 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=70.2
Q ss_pred CCceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEE
Q 001244 144 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1116)
Q Consensus 144 ~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdEi~ 222 (1116)
-..+.|....++|||+..||+.|+|+.+|..||+|... ++. .+|+|. |+||| ||||+++. .+.|+.||+|.
T Consensus 67 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~ 138 (162)
T 2kfu_A 67 GSRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NNE--FNVVDVGSLNGT-YVNREPVD---SAVLANGDEVQ 138 (162)
T ss_dssp SCEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TTE--EEEECCCCSSCE-EETTBCCS---EEECCSSCEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCEEE
Confidence 34566777899999999999999999999999999985 333 889999 68999 79999997 58999999999
Q ss_pred EccCCCeeEEeeecC
Q 001244 223 FSPSGKHSYIFQQLS 237 (1116)
Q Consensus 223 f~~~~~~ayifq~l~ 237 (1116)
|+. ..++|..-.
T Consensus 139 iG~---~~l~f~~~~ 150 (162)
T 2kfu_A 139 IGK---FRLVFLTGP 150 (162)
T ss_dssp ETT---EEEEEECSC
T ss_pred ECC---EEEEEEeCC
Confidence 964 567777543
No 126
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.96 E-value=5e-11 Score=144.28 Aligned_cols=147 Identities=21% Similarity=0.270 Sum_probs=86.5
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEE----eccccccccc
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 1025 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~I----s~seL~sk~~ 1025 (1116)
.|.|++.+++.+...+. -..+..+.. ...+...+|||+||||||||+||++||+.++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~--~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALF--GGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTT--CCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHh--CCCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 47888888777643221 110000000 1112234899999999999999999999997665543 2233322211
Q ss_pred cch---H-HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhc---------CCCcCCCCCEEE
Q 001244 1026 GEG---E-KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD---------GLRTKDKERVLV 1092 (1116)
Q Consensus 1026 Ges---E-k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld---------gl~~k~~~kVLV 1092 (1116)
... + ......+..|.+ +||||||||.+- . ...+.|+..|+ |.....+.++.|
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~---gil~IDEid~l~-----~-------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADG---GIAVIDEIDKMR-----D-------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSS---SEECCTTTTCCC-----S-------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eccccccccccCCeeEecCC---CcEEeehhhhCC-----H-------hHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 110 0 001123444543 899999999882 1 22233333333 222223467899
Q ss_pred EEEeCCCC-------------CCcHHHHhhcCCeE
Q 001244 1093 LAATNRPF-------------DLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1093 IaTTNrp~-------------~LD~ALlRRF~r~I 1114 (1116)
|||||+.+ .|++++++||+..+
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~ 472 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILSRFDLIF 472 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHhhCeEEE
Confidence 99999986 89999999997543
No 127
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=98.96 E-value=1.5e-09 Score=114.43 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=71.0
Q ss_pred CceeEe-cceEEEeccC---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeec
Q 001244 145 SHLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVH 207 (1116)
Q Consensus 145 p~~~i~-~~~~t~G~~~---------------~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~ 207 (1116)
..+.|. ++.|+|||+. .||+.|+|+.+|..||.|.....++....+|+|. |+||| ||||++|
T Consensus 95 ~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGT-fVNG~rI 173 (205)
T 3elv_A 95 KRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVI 173 (205)
T ss_dssp EEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCC-EETTEEC
T ss_pred eEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCC-eECCEEC
Confidence 356774 5899999984 4999999999999999998765555555788997 88999 7999999
Q ss_pred CCCceEEeeCCCEEEEccCC
Q 001244 208 PKDSQVVLRGGDELVFSPSG 227 (1116)
Q Consensus 208 ~k~~~~~L~~GdEi~f~~~~ 227 (1116)
.++..+.|+.||+|.|+.+.
T Consensus 174 ~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 174 PGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp CBTSCEECCTTCEEESSSSG
T ss_pred CCCceeECCCCCEEEECCCC
Confidence 99999999999999999874
No 128
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=98.94 E-value=3.3e-09 Score=100.64 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=66.8
Q ss_pred ceeEec-ceEEEeccC-ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEE
Q 001244 146 HLSMTG-AVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1116)
Q Consensus 146 ~~~i~~-~~~t~G~~~-~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdEi~ 222 (1116)
.+.+.. ..|+|||.. .||+.|.|+.+|..||+|.... +|. .+|+|. |+||| ||||+++.+ .+.|+.||+|.
T Consensus 18 ~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~~~--~~l~Dl~S~nGt-~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 18 EFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN-DNS--VLIEDLGSKNGV-IVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp EEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT-TSC--EEEEECSCSSCC-EETTEECSS--EEECCTTCCEE
T ss_pred EEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC-CCc--EEEEECcCCCCe-EECCEECCC--CeECCCCCEEE
Confidence 456665 469999999 7999999999999999999752 233 789999 78999 799999987 67999999999
Q ss_pred EccCCCeeEEeee
Q 001244 223 FSPSGKHSYIFQQ 235 (1116)
Q Consensus 223 f~~~~~~ayifq~ 235 (1116)
|+. ..+.|..
T Consensus 92 ~G~---~~~~~~~ 101 (106)
T 3gqs_A 92 LGT---TLFLLVD 101 (106)
T ss_dssp ETT---EEEEEEE
T ss_pred ECC---EEEEEEc
Confidence 964 4566653
No 129
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=98.93 E-value=3.3e-09 Score=107.48 Aligned_cols=95 Identities=23% Similarity=0.390 Sum_probs=75.1
Q ss_pred eeeccc--CCCCceeEe---cceEEEeccC---ccceeecCCCCCccceEEEEeecCCc-ceEEEEEecCcceEEECCee
Q 001244 136 RLISQC--SQNSHLSMT---GAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNV 206 (1116)
Q Consensus 136 rL~s~~--~~~p~~~i~---~~~~t~G~~~---~cd~~l~d~~~s~~~C~l~~~~~~g~-~~a~Le~~~~~G~v~vNg~~ 206 (1116)
-|+.++ ++-..+.++ ....+|||.. .||+.|.++.||..||.|.....++. .+++++..++||| ||||++
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt-~VNG~~ 118 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKK 118 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCE-EETTEE
T ss_pred eEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCce-EECCEE
Confidence 466665 334454444 5789999975 79999999999999999998755443 4677888899999 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeee
Q 001244 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQ 235 (1116)
Q Consensus 207 ~~k~~~~~L~~GdEi~f~~~~~~ayifq~ 235 (1116)
|.+ .+.|++||+|.|+. .|.|.|.+
T Consensus 119 i~~--~~~L~~GD~I~~G~--~~~Frf~~ 143 (154)
T 4ejq_A 119 VTE--PSILRSGNRIIMGK--SHVFRFNH 143 (154)
T ss_dssp CCS--CEECCTTCEEEETT--TEEEEEEC
T ss_pred cCC--ceECCCCCEEEECC--cEEEEEcC
Confidence 954 68999999999973 46788875
No 130
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=98.92 E-value=3e-09 Score=108.13 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=64.1
Q ss_pred CceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecCCCceEEeeCCCEEEE
Q 001244 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1116)
Q Consensus 145 p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~L~~GdEi~f 223 (1116)
-.+.|....++|||...||+.|+|+.||..||+|.... +. .+|+|. |+||| ||||+++. .+.|+.||+|.|
T Consensus 78 ~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~--~~--~~l~DlgStNGT-~VNG~~i~---~~~L~~GD~I~l 149 (157)
T 3oun_A 78 RTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG--QV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIRL 149 (157)
T ss_dssp CEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS--SC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEEE
T ss_pred eEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC--CE--EEEEECCCCCCe-EECCEECc---eEECCCCCEEEE
Confidence 35677788999999999999999999999999999753 33 889999 78999 79999996 689999999999
Q ss_pred cc
Q 001244 224 SP 225 (1116)
Q Consensus 224 ~~ 225 (1116)
+.
T Consensus 150 G~ 151 (157)
T 3oun_A 150 GH 151 (157)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=6.6e-09 Score=115.97 Aligned_cols=133 Identities=14% Similarity=0.240 Sum_probs=83.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh-CC-------------
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA------------- 1010 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el-g~------------- 1010 (1116)
..+|+++.|++.+++.+...+. .. .+.+. +||+||+|+|||++++++|+++ +.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~---------~~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD---------QP---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT---------CT---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHh---------hC---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 4679999999999888876541 01 12223 9999999999999999999965 11
Q ss_pred ---------------eeeEEeccccccccccchHHHHHHHHHHHh--------------cCCCeEEEEccccccccCCCC
Q 001244 1011 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 1011 ---------------pfI~Is~seL~sk~~GesEk~Ir~lF~~A~--------------k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
+++.++..... ......++.++..+. ...|.||+|||++.|-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 12222221110 001112444444432 2256799999999862
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhc
Q 001244 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRL 1110 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF 1110 (1116)
....+.|+..+... ..++.+|.+|+.+..+.+++++|+
T Consensus 148 -------~~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 148 -------KDAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp -------HHHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS
T ss_pred -------HHHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc
Confidence 12233344444432 235788889999999999999998
No 132
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.90 E-value=5.2e-09 Score=101.55 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=67.6
Q ss_pred eeEecceEEEec--cCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CcceEEECCeecCCCceEEeeCCCEEEE
Q 001244 147 LSMTGAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1116)
Q Consensus 147 ~~i~~~~~t~G~--~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~-~~G~v~vNg~~~~k~~~~~L~~GdEi~f 223 (1116)
+.|....++||| ...||+.|.|+.+|..||.|... ++. .+|+|.+ +||| ||||+++. ..+.|+.||+|.|
T Consensus 31 ~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~dl~S~ngt-~vNg~~i~--~~~~L~~GD~I~i 103 (120)
T 1wln_A 31 YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGV--VTVTPRSMDAET-YVDGQRIS--ETTMLQSGMRLQF 103 (120)
T ss_dssp EECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSC--EEEEESCSSSCE-EETSCBCS--SCEEECTTCEEEE
T ss_pred EEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CCE--EEEEECCCCCCE-EECCEEcC--CCEECCCCCEEEE
Confidence 667778899996 47999999999999999999975 333 7899995 7999 89999998 3689999999999
Q ss_pred ccCCCeeEEeee
Q 001244 224 SPSGKHSYIFQQ 235 (1116)
Q Consensus 224 ~~~~~~ayifq~ 235 (1116)
+.. +.|.|..
T Consensus 104 G~~--~~~~f~~ 113 (120)
T 1wln_A 104 GTS--HVFKFVD 113 (120)
T ss_dssp TTT--EEEEEEC
T ss_pred CCc--eEEEEEC
Confidence 763 6777764
No 133
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=5.4e-09 Score=117.09 Aligned_cols=131 Identities=21% Similarity=0.288 Sum_probs=88.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC-----CeeeEEeccc
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg-----~pfI~Is~se 1019 (1116)
..+|+++.|++.+++.|...+. .+. . .++||+||||||||++|+++|+.+. ..++.++.++
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~----------~g~---~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVD----------EGK---L-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHH----------TTC---C-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHh----------cCC---C-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 3578999999999998887775 221 1 2499999999999999999999972 3466666654
Q ss_pred cccccccchHHHHHHHHHHHh------cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEE
Q 001244 1020 ITSKWFGEGEKYVKAVFSLAS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1116)
Q Consensus 1020 L~sk~~GesEk~Ir~lF~~A~------k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVI 1093 (1116)
..+ ...++..+.... ...+.|++|||+|.|.. ...+.|+..++.. ...+.+|
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~----~~~~~~i 144 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------AAQNALRRVIERY----TKNTRFC 144 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------HHHHHHHHHHHHT----TTTEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhcC----CCCeEEE
Confidence 211 122333222221 12368999999998831 1233444444432 2456778
Q ss_pred EEeCCCCCCcHHHHhhcC
Q 001244 1094 AATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1094 aTTNrp~~LD~ALlRRF~ 1111 (1116)
.+||.+..+.+++++|+.
T Consensus 145 l~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQCT 162 (340)
T ss_dssp EEESCGGGSCHHHHTTSE
T ss_pred EEecCccccchhHHhhce
Confidence 889999999999999875
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.88 E-value=2e-09 Score=109.35 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=47.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccccccccchHH-HHHHHHHHHhcCCCeEEEEcccccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~sk~~GesEk-~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
..+++|+||+|||||+|+++|++.+ |..++.+++.++...+...... ....++... ..|.+|+|||++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 3689999999999999999999887 7778888877765432211000 000122222 25789999999844
No 135
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.87 E-value=7.7e-09 Score=118.81 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=80.0
Q ss_pred CCCCceeeecccCCCCceeEecceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCcceEEECCeecC
Q 001244 130 SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (1116)
Q Consensus 130 ~~~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~-~~~G~v~vNg~~~~ 208 (1116)
...||..|+.... -..+.|....++|||+..||+.++|+.+|..||+|... ++. .+|+|. |+||| ||||+++.
T Consensus 285 ~~~~~~~l~~~~~-g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~ 358 (388)
T 2ff4_A 285 GQQAVAYLHDIAS-GRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGV-HVQHERIR 358 (388)
T ss_dssp SSBCCCEEEETTT-CCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS
T ss_pred CCCCeEEEEECCC-CcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCe-EECCEECC
Confidence 3469999988543 35788889999999999999999999999999999975 333 789996 79999 79999995
Q ss_pred CCceEEeeCCCEEEEccCCCeeEEeee
Q 001244 209 KDSQVVLRGGDELVFSPSGKHSYIFQQ 235 (1116)
Q Consensus 209 k~~~~~L~~GdEi~f~~~~~~ayifq~ 235 (1116)
..+.|++||+|.|+. ..++|..
T Consensus 359 --~~~~L~~gd~i~~G~---~~~~~~~ 380 (388)
T 2ff4_A 359 --SAVTLNDGDHIRICD---HEFTFQI 380 (388)
T ss_dssp --SEEEECTTCEEEETT---EEEEEEC
T ss_pred --CceECCCCCEEEECC---EEEEEEe
Confidence 589999999999964 5677763
No 136
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.86 E-value=1.8e-08 Score=113.18 Aligned_cols=143 Identities=23% Similarity=0.291 Sum_probs=90.3
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~ 1025 (1116)
.+|+++.|.+.+++.+...+..... . ..+...++|+||||+|||+||++||..++.++...+...+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4788999999888888766642110 1 123357999999999999999999999999887766544321
Q ss_pred cchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhc-------CCCc----CCCCCEEEEE
Q 001244 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRT----KDKERVLVLA 1094 (1116)
Q Consensus 1026 GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ld-------gl~~----k~~~kVLVIa 1094 (1116)
...+..++.. .....|+||||++.+.. . ....+...+.... +... ..-.++.+++
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~----~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----A----VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----H----HHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----H----HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1223333332 12457999999998842 1 1111111111110 0000 0012467888
Q ss_pred EeCCCCCCcHHHHhhcCCeE
Q 001244 1095 ATNRPFDLDEAVVRRLPRRT 1114 (1116)
Q Consensus 1095 TTNrp~~LD~ALlRRF~r~I 1114 (1116)
+|+++..|++.+++||...+
T Consensus 156 at~~~~~Ls~~l~sR~~l~~ 175 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIIL 175 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEE
T ss_pred ecCCcccCCHHHHHhcCcee
Confidence 99999999999999996443
No 137
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=98.80 E-value=2.6e-08 Score=97.56 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCCCCCceeeecccCCCCceeEe--cceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCe
Q 001244 128 VGSRIPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGN 205 (1116)
Q Consensus 128 ~~~~~pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~ 205 (1116)
.....|.=-.|.-.++...+.++ ++..+|||...||+.|.++.+|..||.|...+ +|. ++|++.++||| ||||+
T Consensus 22 ~~~~~PhLvnLn~Dp~~s~~l~y~L~~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~-~g~--~~l~dl~~ngt-~VNG~ 97 (124)
T 3fm8_A 22 VGDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITS-EGQ--VMLTPQKNTRT-FVNGS 97 (124)
T ss_dssp -----CEEEETTCCTTSSCCCEEECCSEEEEESSTTCSEECCSTTCCSSCEEEEECT-TSC--EEEEECTTCCE-EETTE
T ss_pred ecCCccEEEEeCCCCccCceEEEECCCCeEECCCCCCCEEECCCCeecceEEEEECC-CCe--EEEEECCCCCE-EECCE
Confidence 34445643333333444444444 45789999999999999999999999998642 343 78999999998 89999
Q ss_pred ecCCCceEEeeCCCEEEEccCCCeeEEee
Q 001244 206 VHPKDSQVVLRGGDELVFSPSGKHSYIFQ 234 (1116)
Q Consensus 206 ~~~k~~~~~L~~GdEi~f~~~~~~ayifq 234 (1116)
.|.+ .+.|+.||.|.|+.. +.|.|-
T Consensus 98 ~V~~--~~~L~~GD~I~lG~~--~~FrFn 122 (124)
T 3fm8_A 98 SVSS--PIQLHHGDRILWGNN--HFFRLN 122 (124)
T ss_dssp ECCS--CEEECTTCEEEETTT--EEEEEE
T ss_pred EcCC--cEECCCCCEEEECCC--eEEEEE
Confidence 9974 789999999999743 566664
No 138
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.80 E-value=5.6e-08 Score=109.09 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCe----------------------
Q 001244 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 1011 (1116)
Q Consensus 954 ldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~p---------------------- 1011 (1116)
+++..+.+...+. .+ +.+..+||+||+|+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~----------~~---~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 7 LRPDFEKLVASYQ----------AG---RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GHHHHHHHHHHHH----------TT---CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHH----------cC---CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4566666766654 22 234579999999999999999999998532
Q ss_pred --eeEEeccccccccccchHHHHHHHHHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcC
Q 001244 1012 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1116)
Q Consensus 1012 --fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k 1085 (1116)
++.++...- + .......++.+++.+... ...||||||+|.|- ....+.|+..++..
T Consensus 74 ~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEep--- 135 (334)
T 1a5t_A 74 PDYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEEP--- 135 (334)
T ss_dssp TTEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTSC---
T ss_pred CCEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcCC---
Confidence 333332100 0 011234567777776543 35799999999883 23356677777652
Q ss_pred CCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1086 DKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1086 ~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
..++++|.+||.++.|.++|++|+.
T Consensus 136 -~~~~~~Il~t~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 136 -PAETWFFLATREPERLLATLRSRCR 160 (334)
T ss_dssp -CTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred -CCCeEEEEEeCChHhCcHHHhhcce
Confidence 3578888899999999999999874
No 139
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.79 E-value=2.9e-08 Score=131.16 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=60.2
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccc----------------cccccccchHHHHHHHHHHHhcCCC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAP 1044 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~se----------------L~sk~~GesEk~Ir~lF~~A~k~sP 1044 (1116)
.+-|++|||+|+|||+||..++.+. |-....++... +.-.+....|+.+..+...++..++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~ 1510 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1510 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCC
Confidence 3569999999999999988777544 66777776542 2222445568888889999999999
Q ss_pred eEEEEccccccccCCC
Q 001244 1045 SVVFVDEVDSMLGRRE 1060 (1116)
Q Consensus 1045 sIIfIDEID~Llg~R~ 1060 (1116)
++|+||.|..|.+...
T Consensus 1511 ~~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1511 DVIVVDSVAALTPKAE 1526 (1706)
T ss_dssp SEEEESCSTTCCCTTT
T ss_pred CEEEEccHHhCCcccc
Confidence 9999999999987654
No 140
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=3.8e-08 Score=109.82 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=86.6
Q ss_pred CcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh------CCeeeEEecccccccccc
Q 001244 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 1026 (1116)
Q Consensus 953 Gldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el------g~pfI~Is~seL~sk~~G 1026 (1116)
|++++.+.|...+.. + + ...+||+||||+|||++|+++|+.+ ...|+.++...- .
T Consensus 1 g~~~~~~~L~~~i~~----------~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----N 61 (305)
T ss_dssp ---CHHHHHHHHHHT----------C---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----C
T ss_pred ChHHHHHHHHHHHHC----------C---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----C
Confidence 456677777777652 2 2 3589999999999999999999874 346677765420 1
Q ss_pred chHHHHHHHHHHHhcCC----CeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCC
Q 001244 1027 EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1116)
Q Consensus 1027 esEk~Ir~lF~~A~k~s----PsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~L 1102 (1116)
.....++.+++.+...+ ..||||||+|.|- ....|.|+..++.. +..+++|.+|+.+..|
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep----~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEP----PEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSC----CTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCC----CCCeEEEEEECChHhC
Confidence 22345778888886543 3699999999982 23356777777653 3567888888889999
Q ss_pred cHHHHhh
Q 001244 1103 DEAVVRR 1109 (1116)
Q Consensus 1103 D~ALlRR 1109 (1116)
.++|++|
T Consensus 126 ~~tI~SR 132 (305)
T 2gno_A 126 LPTIKSR 132 (305)
T ss_dssp CHHHHTT
T ss_pred hHHHHce
Confidence 9999999
No 141
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.73 E-value=2.1e-08 Score=103.35 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=64.2
Q ss_pred cCCCCCCCCCCCcccccCcHHH----HHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---
Q 001244 936 ADVIPPSDIGVTFDDIGALENV----KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA--- 1008 (1116)
Q Consensus 936 ~~iIp~~e~~vtfddIgGldev----k~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el--- 1008 (1116)
...+++.....+|+++.+.... .+.+..++.. . .. ...+.+++|+||+|||||+||++|++.+
T Consensus 12 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~----~~---~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 12 SMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAE---Y----EP---GKKMKGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp EESSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHH---C----CS---SCCCCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHH---h----hh---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3344543335688888765432 2333333321 0 00 1122689999999999999999999988
Q ss_pred CCeeeEEeccccccccccch-HHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1009 GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1009 g~pfI~Is~seL~sk~~Ges-Ek~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
+.+++.++++++...+.... ...+..++..... +.+|||||++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 82 NVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp TCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 78888888877654322110 0011223333333 369999999765
No 142
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.72 E-value=4.2e-08 Score=91.77 Aligned_cols=70 Identities=11% Similarity=0.219 Sum_probs=59.5
Q ss_pred CCCceeEe-cceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCCCceEEeeCCCE
Q 001244 143 QNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 220 (1116)
Q Consensus 143 ~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k~~~~~L~~GdE 220 (1116)
.-|.+.+. ...|++||+++|+|+++|+++|..|+.|.+.++| .|+ ..+.||+|||||.++ ..+.|..||-
T Consensus 11 ~~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~-l~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 11 GLPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVR-LAALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp TSCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEE-EEESSSCEEETTEEE---SEEEECGGGC
T ss_pred CcccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEE-EEeccCcEEECCEEe---eeEEccCCcc
Confidence 44555555 4789999999999999999999999999988666 444 249999999999999 5899999998
No 143
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.68 E-value=1.2e-09 Score=125.53 Aligned_cols=129 Identities=21% Similarity=0.267 Sum_probs=78.1
Q ss_pred cccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc----
Q 001244 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---- 1022 (1116)
Q Consensus 950 dIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s---- 1022 (1116)
.+.|.....+.+.+.+... ......|||+|++||||+++|++|+... +.+|+.++|+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKI------------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhccHHhhHHHHHHHHh------------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4555556666666655421 1122468999999999999999999987 47999999987632
Q ss_pred -ccccchH-------HHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEE
Q 001244 1023 -KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1116)
Q Consensus 1023 -k~~GesE-------k~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIa 1094 (1116)
..+|... ......|+.|.+ ++||||||+.|- ...+..+.+++++-....-|........+.||+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELS-----LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCC-----HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCC-----HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 2233210 112356777766 899999999882 222222222222110000111111234688999
Q ss_pred EeCC
Q 001244 1095 ATNR 1098 (1116)
Q Consensus 1095 TTNr 1098 (1116)
|||+
T Consensus 278 at~~ 281 (387)
T 1ny5_A 278 ATNR 281 (387)
T ss_dssp EESS
T ss_pred eCCC
Confidence 9997
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.66 E-value=1.3e-07 Score=94.65 Aligned_cols=101 Identities=24% Similarity=0.330 Sum_probs=66.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~ 1061 (1116)
..++|+||+|+|||+|+++++..+ |..++.++..++... +....|.+|+|||++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~---- 97 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN---- 97 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh----
Confidence 579999999999999999999988 777888888776543 1123578999999997631
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC-CCCCCc--HHHHhhcCCeE
Q 001244 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPFDLD--EAVVRRLPRRT 1114 (1116)
Q Consensus 1062 ~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN-rp~~LD--~ALlRRF~r~I 1114 (1116)
..+..+..+++.+... +..++|| ||| .|..+. +.+.+||..-+
T Consensus 98 -~~~~~l~~li~~~~~~--------g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~ 143 (149)
T 2kjq_A 98 -EEQALLFSIFNRFRNS--------GKGFLLL-GSEYTPQQLVIREDLRTRMAYCL 143 (149)
T ss_dssp -HHHHHHHHHHHHHHHH--------TCCEEEE-EESSCTTTSSCCHHHHHHGGGSE
T ss_pred -HHHHHHHHHHHHHHHc--------CCcEEEE-ECCCCHHHccccHHHHHHHhcCe
Confidence 1233333344333211 1222444 555 454332 89999986543
No 145
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.65 E-value=1.4e-08 Score=123.11 Aligned_cols=49 Identities=31% Similarity=0.441 Sum_probs=41.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
...|+++.|.+.+++.+...+.. + ..+||+||||||||+||++||..+.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~----------g------~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ----------K------RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT----------T------CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccC----------C------CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35789999999999888877641 1 3799999999999999999999884
No 146
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.61 E-value=1.4e-07 Score=90.31 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=80.1
Q ss_pred ceeeecccCCCCceeEe--cceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCCCc
Q 001244 134 WARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDS 211 (1116)
Q Consensus 134 W~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k~~ 211 (1116)
-|.|.|+....|.|.|. ....+|||+.- ..+.|..+|..||+|+-.-.+|. +.+-+.|.|++ +|||+++.|+.
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p~--t~I~DkrcSR~hv~L~ad~~~~~--v~vk~lG~Np~-~vng~~l~k~~ 83 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGPL--TQVTDRKCSRTQVELVADPETRT--VAVKQLGVNPS-TTGTQELKPGL 83 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBTT--TTBCCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EEC-CBCCTTC
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccceeeeEEEEEecCCCE--EEEEEcccCCc-EECCEEcCCCC
Confidence 47899999999999995 68999999994 45799999999999995544444 66789999999 69999999999
Q ss_pred eEEeeCCCEEEEccCCCeeEEee
Q 001244 212 QVVLRGGDELVFSPSGKHSYIFQ 234 (1116)
Q Consensus 212 ~~~L~~GdEi~f~~~~~~ayifq 234 (1116)
.+.|++||.+.+ ..++|.|-++
T Consensus 84 ~~~L~~GD~leL-l~g~y~~~v~ 105 (110)
T 2brf_A 84 EGSLGVGDTLYL-VNGLHPLTLR 105 (110)
T ss_dssp EEEEETTCEEEE-ETTEEEEEEE
T ss_pred EEEecCCCEEEE-ccCCeEEEEE
Confidence 999999999988 5677777655
No 147
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.61 E-value=1.9e-07 Score=88.36 Aligned_cols=95 Identities=20% Similarity=0.281 Sum_probs=79.8
Q ss_pred ceeeecccCCCCceeEec-ceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCCCce
Q 001244 134 WARLISQCSQNSHLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ 212 (1116)
Q Consensus 134 W~rL~s~~~~~p~~~i~~-~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k~~~ 212 (1116)
=|-|.|+....|.|.+.. ...+|||+..|.+ .|..+|..||+|+-...+|. +.+-+.|.|++ +|||+.+.|+..
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g~--v~vk~lg~Np~-~vng~~l~k~~~ 78 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKGY--VKVKQVGVNPT-SIDSVVIGKDQE 78 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECCBTCE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCCE--EEEEECcCCCC-eECCEEcCCCCe
Confidence 378999998889888864 6688999999866 79999999999997755553 67889999999 699999999999
Q ss_pred EEeeCCCEEEEccCCCeeEEee
Q 001244 213 VVLRGGDELVFSPSGKHSYIFQ 234 (1116)
Q Consensus 213 ~~L~~GdEi~f~~~~~~ayifq 234 (1116)
+.|+.||.|.+ ..++|.|-++
T Consensus 79 ~~L~~GD~l~L-l~~~~~~~v~ 99 (102)
T 3kt9_A 79 VKLQPGQVLHM-VNELYPYIVE 99 (102)
T ss_dssp EEECTTCCEEE-ETTEEEEEEE
T ss_pred EEeCCCCEEEE-ccCCceEEEE
Confidence 99999999987 4566666543
No 148
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.56 E-value=2.5e-07 Score=91.75 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=83.4
Q ss_pred CceeeecccCCCCceeEe--cceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCCC
Q 001244 133 PWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKD 210 (1116)
Q Consensus 133 pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k~ 210 (1116)
+-|.|.++...+|.|.|. ....+|||+.- ..+.|...|..||+|+-.-.+|. +.+=..|.|++ +|||+++.|+
T Consensus 8 ~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgPe--t~ItDkRcSR~qv~L~ad~~~g~--V~Vk~lG~NP~-~vng~~L~k~ 82 (143)
T 1yj5_C 8 GRLWLQSPTGGPPPIFLPSDGQALVLGRGPL--TQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVHELKPG 82 (143)
T ss_dssp EEEEEECCTTSCCCEECCTTTCEEEECSBTT--TTBCCSSSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECCTT
T ss_pred CeEEEEecCCCCCcEEeccCCCCEEEcCCCc--cccccccccceeEEEEEecCCCe--EEEEEcccCCc-EECCEEecCC
Confidence 679999999999999995 68999999994 56899999999999995533433 55779999999 5999999999
Q ss_pred ceEEeeCCCEEEEccCCCeeEEeee
Q 001244 211 SQVVLRGGDELVFSPSGKHSYIFQQ 235 (1116)
Q Consensus 211 ~~~~L~~GdEi~f~~~~~~ayifq~ 235 (1116)
..+.|++||.|.+ ..|+|.|-+.-
T Consensus 83 ~~~~L~~GD~LeL-l~g~y~f~V~f 106 (143)
T 1yj5_C 83 LSGSLSLGDVLYL-VNGLYPLTLRW 106 (143)
T ss_dssp CEEEECTTCEEES-SSSCSEEEEEE
T ss_pred CEEEecCCCEEEE-ecCCceEEEEe
Confidence 9999999999987 57888887765
No 149
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.52 E-value=2.4e-07 Score=127.28 Aligned_cols=121 Identities=24% Similarity=0.410 Sum_probs=76.6
Q ss_pred eEEEEECCCCCchHHHHHH-HHHHhCCeeeEEeccccccccccchHHHHHHHHHHH-h--------------cCCCeEEE
Q 001244 985 KGILLFGPPGTGKTMLAKA-VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA-S--------------KIAPSVVF 1048 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArA-IA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A-~--------------k~sPsIIf 1048 (1116)
+++||+||||||||++|+. ++...+..++.++++...+. ..+.+.+... . ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 5899999999999999955 44444888888887765432 2333333322 0 12347999
Q ss_pred EccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCC------CCCEEEEEEeCCC-----CCCcHHHHhhcCCeEEC
Q 001244 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD------KERVLVLAATNRP-----FDLDEAVVRRLPRRTCV 1116 (1116)
Q Consensus 1049 IDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~------~~kVLVIaTTNrp-----~~LD~ALlRRF~r~I~V 1116 (1116)
||||+.-. ....+.+. ..+++.+++. ..++.... -.++.+|||||++ ..|+++++||| ..|+|
T Consensus 1342 iDEinmp~--~d~yg~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i 1415 (2695)
T 4akg_A 1342 CDEINLPK--LDKYGSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYL 1415 (2695)
T ss_dssp EETTTCSC--CCSSSCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEEC
T ss_pred eccccccc--ccccCchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEe
Confidence 99998532 22222222 2345555553 22322111 1368999999999 48999999999 55553
No 150
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.52 E-value=5e-08 Score=109.72 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=69.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCe--eeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~p--fI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~ 1062 (1116)
..+||+||||||||+||.++|.+.|.+ |+.+...+..+.+....+..+..+++...+.. +||||+|+.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 568999999999999999999876554 55552244433333455666666777776654 99999999986433220
Q ss_pred ----chhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHH
Q 001244 1063 ----GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 1106 (1116)
Q Consensus 1063 ----~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~AL 1106 (1116)
.....+++++..|...+. ..++.+|+++| +...++++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k------~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAA------SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHH------HHTCEEEEECC-CSSCSSSH
T ss_pred cccchHHHHHHHHHHHHHHHHh------hCCCEEEEEeC-CcccchhH
Confidence 112234444444443332 23567888888 45555543
No 151
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.52 E-value=7.8e-09 Score=118.10 Aligned_cols=92 Identities=25% Similarity=0.385 Sum_probs=62.3
Q ss_pred ccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCC--eeeEEeccccccc---
Q 001244 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK--- 1023 (1116)
Q Consensus 949 ddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~--pfI~Is~seL~sk--- 1023 (1116)
..+.|.......+.+.+.... . ....+|++|++||||+++|++|+...+. .|+.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a-------~-----~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~ 196 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA-------K-----SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAE 196 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH-------T-----SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHH
T ss_pred ccccccchHHHHHHhhhhhhh-------c-----cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHH
Confidence 346677666666665554211 1 1235999999999999999999998843 3999999976322
Q ss_pred --cccch-------HHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 1024 --WFGEG-------EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1024 --~~Ges-------Ek~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
.+|.. .......|+.|.+ ++||||||+.|
T Consensus 197 ~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l 234 (368)
T 3dzd_A 197 SELFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL 234 (368)
T ss_dssp HHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS
T ss_pred HHhcCccccccCCcccccCChHhhcCC---CeEEecChhhC
Confidence 22211 1112346777765 89999999998
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.49 E-value=4.5e-07 Score=102.60 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=89.7
Q ss_pred cccccCcHHHHHHHHHHH-HccccChhhhhcCCCCCCCeEEEE--ECCCCCchHHHHHHHHHHh---------CCeeeEE
Q 001244 948 FDDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINI 1015 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V-~lpl~~pelf~~~~l~~p~~gILL--~GPPGTGKT~LArAIA~el---------g~pfI~I 1015 (1116)
.+++.|.+...+.|.+.+ ..... + .......++| +||+|+|||+|++++++.+ ++.++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~-------~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS-------G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT-------S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc-------C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 367889998888888776 42211 1 0123367999 9999999999999999887 5678888
Q ss_pred ecccccc------cc---c-------cch-HHHHHHHHHHHh-cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHH
Q 001244 1016 SMSSITS------KW---F-------GEG-EKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1116)
Q Consensus 1016 s~seL~s------k~---~-------Ges-Ek~Ir~lF~~A~-k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~ 1077 (1116)
++..... .. + +.. ......+..... ...|.||||||++.+...+. ... .++..++.
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~----~~l~~l~~ 166 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAA----EDLYTLLR 166 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCH----HHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cch----HHHHHHHH
Confidence 8643211 00 0 111 122233332222 23578999999998853211 011 23333333
Q ss_pred HhcCCCcCCC--CCEEEEEEeCCCC---CCc---HHHHhhcCCeEE
Q 001244 1078 NWDGLRTKDK--ERVLVLAATNRPF---DLD---EAVVRRLPRRTC 1115 (1116)
Q Consensus 1078 ~Ldgl~~k~~--~kVLVIaTTNrp~---~LD---~ALlRRF~r~I~ 1115 (1116)
.+..... ++ .++.||++||.+. .++ +.+.+||..+|.
T Consensus 167 ~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 211 (412)
T 1w5s_A 167 VHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH 211 (412)
T ss_dssp HHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE
T ss_pred HHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeee
Confidence 3332211 13 6799999998665 244 666677765543
No 153
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.44 E-value=9.2e-08 Score=106.67 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=46.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccccccccc-hHHHHHHHHHHHhcCCCeEEEEcccccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~sk~~Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID~L 1055 (1116)
..+++|+||||||||+||.+||+++ |.+++.+.++++...+... ....+..++.... ...+||||||+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3689999999999999999999866 4888888887765433221 1111122222222 2469999999755
No 154
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.42 E-value=6.6e-07 Score=97.87 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCeEEEEcchhhhhc------CChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCC
Q 001244 704 SPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 777 (1116)
Q Consensus 704 ~P~ILfidDie~~l~------~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p 777 (1116)
.+.||||||+|.+.. ...+..+.|...|+.-..++++|++++..+. ..++
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-------------------~~~~----- 185 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-------------------ENFF----- 185 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-------------------HHHH-----
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-------------------HHHH-----
Confidence 467999999999442 2567888888999988889999998873210 0000
Q ss_pred CcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHh
Q 001244 778 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE 824 (1116)
Q Consensus 778 ~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle 824 (1116)
.....+..+|+..|.|++|+++++...|+..+.
T Consensus 186 --------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 186 --------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp --------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred --------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 011247778999999999999999877765544
No 155
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.39 E-value=3.6e-07 Score=88.57 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=81.8
Q ss_pred CceeeecccCCCCceeEe--cceEEEeccCccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCCC
Q 001244 133 PWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKD 210 (1116)
Q Consensus 133 pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k~ 210 (1116)
.-|.|.++...+|.|.|. ....+|||+.- ..+.|...|..||+|+-.-.++. +.+=..|.|++ +|||+++.|+
T Consensus 15 ~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~--t~I~DkrcSR~qv~L~ad~~~~~--v~vk~lG~NP~-~vng~~l~k~ 89 (119)
T 1ujx_A 15 GRLWLQSPTGGPPPIFLPSDGQALVLGRGPL--TQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVQELKPG 89 (119)
T ss_dssp CCEEEECCSSSCCCCCCCTTSCCEEESBBTT--TTBCCTTSCTTSEEEEEETTTTE--EEEEECSSSCC-BSSSSBCCTT
T ss_pred ceEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccccceeEEEEEecCCCE--EEEEEcccCCc-EECCEEecCC
Confidence 568999999999999995 68999999994 45799999999999995533333 56679999999 6999999999
Q ss_pred ceEEeeCCCEEEEccCCCeeEEee
Q 001244 211 SQVVLRGGDELVFSPSGKHSYIFQ 234 (1116)
Q Consensus 211 ~~~~L~~GdEi~f~~~~~~ayifq 234 (1116)
..+.|++||.+.+ ..++|.|-++
T Consensus 90 ~~~~L~~GD~l~L-l~g~y~~~v~ 112 (119)
T 1ujx_A 90 LSGSLSLGDVLYL-VNGLYPLTLR 112 (119)
T ss_dssp CEEEEETTCCCBC-BTTBSCCEEE
T ss_pred CEEEecCCCEEEE-ecCCeEEEEE
Confidence 9999999999977 5678877665
No 156
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.29 E-value=5.7e-07 Score=94.55 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=73.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh--------C-CeeeEEeccccccccc----------c---c--hHHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA--------G-ANFINISMSSITSKWF----------G---E--GEKYVKAVFSLAS 1040 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el--------g-~pfI~Is~seL~sk~~----------G---e--sEk~Ir~lF~~A~ 1040 (1116)
.-+|++|+||+|||++|.+++... | .+++..++..+...++ . + ....+..++..+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 468999999999999998875442 4 5555555555432221 1 1 0112222221133
Q ss_pred cCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcCCeEE
Q 001244 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1041 k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~r~I~ 1115 (1116)
...+||||||++.+++.+....+. .+ ++..+... ....+-||.+|+.+..|+.+|++|+..+++
T Consensus 86 -~~~~vliIDEAq~l~~~~~~~~e~---~r----ll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~ 149 (199)
T 2r2a_A 86 -NIGSIVIVDEAQDVWPARSAGSKI---PE----NVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYH 149 (199)
T ss_dssp -GTTCEEEETTGGGTSBCCCTTCCC---CH----HHHGGGGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEE
T ss_pred -cCceEEEEEChhhhccCccccchh---HH----HHHHHHhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEE
Confidence 246899999999998665321111 12 33333322 234567788888899999999999987765
No 157
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.27 E-value=4.4e-07 Score=106.43 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=85.4
Q ss_pred ccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHH-HHHhCCeeeE-Eecc---ccccccc
Q 001244 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFIN-ISMS---SITSKWF 1025 (1116)
Q Consensus 951 IgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAI-A~elg~pfI~-Is~s---eL~sk~~ 1025 (1116)
|.|++.+|..|.-.+.- .+.. .+...+|||.|+||| ||+||+++ ++.+.-..+. ..++ .+.....
T Consensus 215 I~G~e~vK~aLll~L~G--G~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS--CVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTT--CCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcC--Cccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 67888888777654431 1100 111237999999999 99999999 6655322211 1111 1111100
Q ss_pred cc-hHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC----
Q 001244 1026 GE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---- 1100 (1116)
Q Consensus 1026 Ge-sEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~---- 1100 (1116)
+. .-..-...+..|.+ +|+|||||+.+ +...+.++.+.+++-...+.|. .-+.++.||||+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCC
Confidence 00 00001223445655 89999999987 3333444444444433334444 3467899999999864
Q ss_pred -------CCcHHHHhhcCCeEE
Q 001244 1101 -------DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1101 -------~LD~ALlRRF~r~I~ 1115 (1116)
.|.+++++||+..+.
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi~i 376 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLIAF 376 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEEEE
T ss_pred CCCccccCCChHHhhheeeEEE
Confidence 899999999986553
No 158
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.23 E-value=4.3e-06 Score=87.12 Aligned_cols=95 Identities=24% Similarity=0.403 Sum_probs=73.1
Q ss_pred eeeccc--CCCCceeEe---cceEEEecc---CccceeecCCCCCccceEEEEeecCC-cceEEEEEecCcceEEECCee
Q 001244 136 RLISQC--SQNSHLSMT---GAVFTVGHN---RQCDLYLKDPSISKNLCRLRRIENGG-PSGALLEITGGKGEVEVNGNV 206 (1116)
Q Consensus 136 rL~s~~--~~~p~~~i~---~~~~t~G~~---~~cd~~l~d~~~s~~~C~l~~~~~~g-~~~a~Le~~~~~G~v~vNg~~ 206 (1116)
-|+.++ ++-..+.+| ...-+|||. ..||+.|.++.|+..||.|.....++ ..++.|+...++.| ||||+.
T Consensus 70 hLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t-~VNG~~ 148 (184)
T 4egx_A 70 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKK 148 (184)
T ss_dssp EEEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCE-EETTEE
T ss_pred eEEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeE-EEcCEE
Confidence 466655 334444444 457899995 46999999999999999999775443 34678888876655 899999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeee
Q 001244 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQ 235 (1116)
Q Consensus 207 ~~k~~~~~L~~GdEi~f~~~~~~ayifq~ 235 (1116)
|.. .+.|++||.|+|+ .+|.|.|.+
T Consensus 149 I~~--~~~L~~GDrI~lG--~~h~Frfn~ 173 (184)
T 4egx_A 149 VTE--PSILRSGNRIIMG--KSHVFRFNH 173 (184)
T ss_dssp CCS--CEECCTTCEEEET--TTEEEEEEC
T ss_pred ccc--cEEcCCCCEEEEC--CCCEEEECC
Confidence 964 7899999999997 458898875
No 159
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.23 E-value=3e-06 Score=91.64 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=32.2
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001244 490 TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1116)
Q Consensus 490 ~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1116)
...+.|||+||+| +++++||+|+|++.+.+++.++..
T Consensus 62 ~~~~~vLl~G~~G--tGKT~la~~ia~~~~~~~~~i~~~ 98 (272)
T 1d2n_A 62 TPLVSVLLEGPPH--SGKTALAAKIAEESNFPFIKICSP 98 (272)
T ss_dssp CSEEEEEEECSTT--SSHHHHHHHHHHHHTCSEEEEECG
T ss_pred CCCeEEEEECCCC--CcHHHHHHHHHHHhCCCEEEEeCH
Confidence 3456899999999 999999999999999988877653
No 160
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.23 E-value=1.8e-05 Score=88.65 Aligned_cols=142 Identities=8% Similarity=0.054 Sum_probs=85.5
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCccccc
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 783 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~ 783 (1116)
.|.||||||+|. +. .+..+.|...|+....++++|++..... ++.-...|...-+
T Consensus 189 ~~~vl~IDEi~~-l~--~~~~~~L~~~le~~~~~~~ii~t~~~~~-----------~i~~t~~~~~~~l----------- 243 (368)
T 3uk6_A 189 IPGVLFIDEVHM-LD--IESFSFLNRALESDMAPVLIMATNRGIT-----------RIRGTSYQSPHGI----------- 243 (368)
T ss_dssp CBCEEEEESGGG-SB--HHHHHHHHHHTTCTTCCEEEEEESCSEE-----------ECBTSSCEEETTC-----------
T ss_pred cCceEEEhhccc-cC--hHHHHHHHHHhhCcCCCeeeeeccccee-----------eeeccCCCCcccC-----------
Confidence 489999999999 43 5677788888887777888887764100 0000000000001
Q ss_pred ccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHHhhchhhhhcccchhhhhhhhhcCCCCCCCchhhhcccccc
Q 001244 784 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTL 863 (1116)
Q Consensus 784 ~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~qle~~Lpdlk~R~nIl~Iht~l~~~~lecvDLeeLai~dk~L 863 (1116)
...+..+|.. |.|++|.++++...++..+... ...+....++.|+..+.+-
T Consensus 244 ----------~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~------------------~~~~~~~~l~~l~~~~~~G 294 (368)
T 3uk6_A 244 ----------PIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEE------------------DVEMSEDAYTVLTRIGLET 294 (368)
T ss_dssp ----------CHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHT------------------TCCBCHHHHHHHHHHHHHS
T ss_pred ----------CHHHHhhccE-EEecCCCHHHHHHHHHHHHHHc------------------CCCCCHHHHHHHHHHhcCC
Confidence 1246666755 7999999988876665443320 0112333445566555545
Q ss_pred chhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 864 TTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 864 sgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
+..++..++..|...+.. .+...|+.++++.++..+
T Consensus 295 ~~r~~~~ll~~a~~~A~~--------~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 295 SLRYAIQLITAASLVCRK--------RKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp CHHHHHHHHHHHHHHHHH--------TTCSSBCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHh
Confidence 667888888888877655 233456777777766654
No 161
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.21 E-value=4.3e-06 Score=94.46 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=54.8
Q ss_pred hhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCC
Q 001244 462 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (1116)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~ 531 (1116)
+..+..|..+...|.+...............+.|||+||+| +++++||||||++++.+++.++.+.+.
T Consensus 21 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 21 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 77788888888777766544444455556788999999999 899999999999999999999876543
No 162
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.16 E-value=2.3e-06 Score=93.05 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=50.6
Q ss_pred chhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCCC
Q 001244 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (1116)
Q Consensus 461 se~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~g 532 (1116)
.++.+..|..+..-|+++..+..-.+ -...++.|||+||+| +++++|||+||+.++.+++.++.+.+..
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~G--tGKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTT--SSHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred hHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 36777777777776665544432111 112457899999999 9999999999999999999988766543
No 163
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.15 E-value=3e-06 Score=101.54 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=31.4
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
..+.+||+||+| .++++|||+||+.++.++..++.
T Consensus 107 ~g~~vll~Gp~G--tGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPG--VGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSS--SSHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEe
Confidence 466899999999 99999999999999998887764
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.07 E-value=1.6e-05 Score=78.93 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC-----ChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~-----~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
.++.+++.+.. ...|.||||||+|.+... ..++.+.|+..++ .+++++|++++.
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~ 160 (195)
T 1jbk_A 102 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTL 160 (195)
T ss_dssp HHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECH
T ss_pred HHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCH
Confidence 45555554432 267999999999995432 4667788888887 467888888774
No 165
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.01 E-value=8.8e-06 Score=92.25 Aligned_cols=67 Identities=30% Similarity=0.424 Sum_probs=51.9
Q ss_pred hhHHHHHHhhhhhhcccccccc---------------ccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 462 DITKNVLIASTYVHLKCNNFAK---------------YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k---------------~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
++.|..|..+.+-|++...... -........+.|||+||+| +++++|||+||+.++.++..+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 8889999999888877643211 0012344567899999999 9999999999999999998888
Q ss_pred cccC
Q 001244 527 SLLL 530 (1116)
Q Consensus 527 s~~l 530 (1116)
...+
T Consensus 105 ~~~~ 108 (376)
T 1um8_A 105 ATSL 108 (376)
T ss_dssp GGGC
T ss_pred chhh
Confidence 6544
No 166
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.97 E-value=1.1e-05 Score=108.23 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=77.4
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc----cc------------ccchHHHHHHHHHHHhc
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----KW------------FGEGEKYVKAVFSLASK 1041 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s----k~------------~GesEk~Ir~lF~~A~k 1041 (1116)
..+..+++|+||||||||+||.+++.++ |.....++....+. .. ....|+.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 3456899999999999999999999886 66677777664321 11 22456778888889999
Q ss_pred CCCeEEEEccccccccCC---CCCch-hH-HHHHHHHHHHHHhcCCCcCCCCCEEEEEEe
Q 001244 1042 IAPSVVFVDEVDSMLGRR---ENPGE-HE-AMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1116)
Q Consensus 1042 ~sPsIIfIDEID~Llg~R---~~~~~-~~-~lr~IlneLL~~Ldgl~~k~~~kVLVIaTT 1096 (1116)
..|++||||+|+.+++.+ ...++ +. ...+++.++|..|.+... ..+++||+|-
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~--~~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--TTTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHH--hCCcEEEEEc
Confidence 999999999999887532 11111 11 124566666666666543 3456666553
No 167
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.96 E-value=2.4e-05 Score=108.01 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=79.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCch
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~ 1064 (1116)
.+++++||+|||||.+++++|+.+|.+++.++|.+-+. ...+.++|..+... .+.++||||+++ ....
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc-----ChHH
Confidence 47999999999999999999999999999999987544 24567777766653 389999999977 2222
Q ss_pred hHHHHHHHHHHHHHh---------cCCCcCCCCCEEEEEEeCC----CCCCcHHHHhhcCC
Q 001244 1065 HEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNR----PFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1065 ~~~lr~IlneLL~~L---------dgl~~k~~~kVLVIaTTNr----p~~LD~ALlRRF~r 1112 (1116)
..++...+..++..+ .|..-.-+....|++|.|. ...|++++.+||..
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~ 774 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFRE 774 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEE
Confidence 222222222222222 1111112345778899983 45799999999953
No 168
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.88 E-value=2.9e-05 Score=86.42 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=62.0
Q ss_pred ceeEecceEEEeccCccc---eeecCCCCCccceEEEEee-------cCCcceEEEEEe-cCcceEEECCeecCCCceEE
Q 001244 146 HLSMTGAVFTVGHNRQCD---LYLKDPSISKNLCRLRRIE-------NGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVV 214 (1116)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd---~~l~d~~~s~~~C~l~~~~-------~~g~~~a~Le~~-~~~G~v~vNg~~~~k~~~~~ 214 (1116)
.+.+....|+|||...++ +.++|+++|..|+.|+-.. ..+....+|+|. |+||| +|||+++. +++..
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGT-fVNGerI~-~~~~~ 92 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGT-KVNEKVVG-QNGDS 92 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCE-EETTEECC-TTCEE
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCE-EECCEECC-Cceee
Confidence 455666679999976633 5899999999999997542 122445789996 77899 79999995 56667
Q ss_pred ee-CCCEEEEccCCC
Q 001244 215 LR-GGDELVFSPSGK 228 (1116)
Q Consensus 215 L~-~GdEi~f~~~~~ 228 (1116)
|. .||+|.|+....
T Consensus 93 L~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 93 YKEKDLKIQLGKCPF 107 (325)
T ss_dssp ECSSEEEEEETTCSS
T ss_pred ecCCCCEEEecCCcc
Confidence 75 699999998755
No 169
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.87 E-value=1.4e-05 Score=84.82 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=26.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
+++||+||||||||++|.+||+.+...++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999998655443
No 170
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.87 E-value=2.7e-05 Score=91.49 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcch
Q 001244 690 INELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQT 769 (1116)
Q Consensus 690 i~~L~evl~~esk~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~ 769 (1116)
+..+++.+.. ..|.||||| +..+..+.|+..|+ .+.++|||++|..+.++..
T Consensus 256 ~~~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~---------------- 307 (468)
T 3pxg_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRKYI---------------- 307 (468)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHHHH----------------
T ss_pred HHHHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHh----------------
Confidence 4455555544 689999999 55677777777776 7799999999954321100
Q ss_pred hhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHH
Q 001244 770 ALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWK 820 (1116)
Q Consensus 770 ~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe 820 (1116)
-+|+ .+.++|. .|.|.+|..+++...++
T Consensus 308 -~~~~---------------------al~~Rf~-~i~v~~p~~e~~~~iL~ 335 (468)
T 3pxg_A 308 -EKDA---------------------ALERRFQ-PIQVDQPSVDESIQILQ 335 (468)
T ss_dssp -TTCS---------------------HHHHSEE-EEECCCCCHHHHHHHHH
T ss_pred -hcCH---------------------HHHHhCc-cceeCCCCHHHHHHHHH
Confidence 0222 3566775 69999999999876665
No 171
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.85 E-value=0.00023 Score=78.93 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.9
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
+.|||+||+| +++++||||||+.++.++..+..
T Consensus 47 ~~vll~G~pG--tGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPG--LAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCC--HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCeEEEec
Confidence 5899999999 89999999999999998877664
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=0.00016 Score=85.91 Aligned_cols=77 Identities=17% Similarity=0.091 Sum_probs=52.4
Q ss_pred cccccccccchhHHHHHHhhhhhh-ccc-cccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEeccc
Q 001244 452 SFESFPYYLSDITKNVLIASTYVH-LKC-NNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1116)
Q Consensus 452 sf~~FPYylse~tk~~L~~~~~~h-Lk~-~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~ 529 (1116)
+|+++-.. +..+..|....-.. ..+ ..+.+.+.+-.+..+.|||+||+| +++++||+|||++++.+++.++.++
T Consensus 37 ~~~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred CHHHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 46664433 55555555543321 111 233344444445678999999999 9999999999999999999998876
Q ss_pred CCC
Q 001244 530 LPG 532 (1116)
Q Consensus 530 l~g 532 (1116)
+.+
T Consensus 113 ~~~ 115 (516)
T 1sxj_A 113 VRS 115 (516)
T ss_dssp CCC
T ss_pred cch
Confidence 554
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.79 E-value=0.00082 Score=74.80 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC--ChhhHHHHHHHHhcC--CCCEEEEeeccCCCcccccCCCCCceeecc
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKF 764 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~--~~e~~~~lk~~Le~L--~g~VviIgS~~~~d~~~~~~~~~~~~~~~~ 764 (1116)
.++.+++.+.. ...|+||||||+|.+... ..+....+...++.+ ..++++|++++.++.
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~--------------- 179 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGF--------------- 179 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTT---------------
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCch---------------
Confidence 45555555543 246999999999995544 456665555556655 568899999885321
Q ss_pred CCcchhhccccCCCcccccccccCcchHHHhhhhccccc-cccccCCchHHHHHHHHHHHh
Q 001244 765 GSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPN-KVTIQLPQDEALLSDWKQQLE 824 (1116)
Q Consensus 765 ~~~~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn-~I~I~~P~DEa~LRRfe~qle 824 (1116)
. +.+ ...+...|.. .|.+++|..+++...+...+.
T Consensus 180 -------~-----~~l-------------~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 180 -------V-----ENL-------------EPRVKSSLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp -------S-----SSS-------------CHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred -------H-----hhh-------------CHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 0 001 1234555654 899999998888766665553
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.78 E-value=0.00031 Score=77.90 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=43.7
Q ss_pred cccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 452 sf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
+|++|-.. +..+..|..+.....+.. ...+.|||+||+| +++++||+++|+.++.++..++.
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~G--tGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAG--LGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTT--SSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCC--CCHHHHHHHHHHHhCCCeEEecc
Confidence 67776443 666666665554322111 2345699999999 89999999999999888766654
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.78 E-value=0.00018 Score=79.43 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=43.1
Q ss_pred cccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 452 sf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
+|++|-+. ++.+..|..+.- . ...+.-+|++||+| +++++||+|||++++.+++-++.
T Consensus 24 ~~~~ivg~--~~~~~~l~~~l~----~----------~~~~~~~L~~G~~G--~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 24 TIDECILP--AFDKETFKSITS----K----------GKIPHIILHSPSPG--TGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp STTTSCCC--HHHHHHHHHHHH----T----------TCCCSEEEECSSTT--SSHHHHHHHHHHHTTEEEEEEET
T ss_pred CHHHHhCc--HHHHHHHHHHHH----c----------CCCCeEEEeeCcCC--CCHHHHHHHHHHHhCCCEEEEcc
Confidence 67776655 677766665543 1 11234579999999 99999999999999988887774
No 176
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.74 E-value=6.1e-05 Score=74.83 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhh-----c-CChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSL-----T-GNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l-----~-~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
.+..+++.+... .+|.||||||+|.+. . ...++.+.|+..++ .+.+++|++++.
T Consensus 102 ~~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~ii~~~~~ 161 (187)
T 2p65_A 102 RLKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA--RGELRCIGATTV 161 (187)
T ss_dssp HHHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH--TTCSCEEEEECH
T ss_pred HHHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHh--cCCeeEEEecCH
Confidence 455555555441 479999999999954 2 23678888888887 478889998884
No 177
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.74 E-value=0.00015 Score=79.70 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=44.5
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se 1019 (1116)
...+.+.|.+...+.|.+ +. . ..++|+||+|+|||+|++.+++.++..++.+++..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~---------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR---------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC---------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCHHHhcChHHHHHHHHH-hc---------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 345678888888777776 42 1 37999999999999999999999877777777654
No 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.65 E-value=0.00051 Score=75.38 Aligned_cols=54 Identities=28% Similarity=0.166 Sum_probs=42.9
Q ss_pred CcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 947 tfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
....+.|.+...+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----------~------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----------Y------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----------C------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred ChHhcCChHHHHHHHHHHHhc----------C------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 456788999988888877641 1 3799999999999999999999986 5556553
No 179
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=97.65 E-value=9.5e-05 Score=72.09 Aligned_cols=76 Identities=21% Similarity=0.209 Sum_probs=63.8
Q ss_pred CCCceeEecceEEEeccC-ccceeecCCCCCccceEEEEeecCCcceEEEEEecCcceEEECCeecCCCceEEeeCCCEE
Q 001244 143 QNSHLSMTGAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (1116)
Q Consensus 143 ~~p~~~i~~~~~t~G~~~-~cd~~l~d~~~s~~~C~l~~~~~~g~~~a~Le~~~~~G~v~vNg~~~~k~~~~~L~~GdEi 221 (1116)
.--.+++....|+||... .|||.|.|+.++..||.|...+++ .+|. -+.||| ||||..+.-+. .|..|+-+
T Consensus 15 ~G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt-~vdG~~v~~~~--~L~~g~~l 86 (123)
T 4a0e_A 15 RGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPL-LQEGLPVPLGT--LLRAGSCL 86 (123)
T ss_dssp TTCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCC-EETTEECCTTC--BCCTTSCE
T ss_pred CCcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCE-EECCEEccccc--ccCCCCEE
Confidence 344788899999999999 999999999999999999987655 6665 677778 79999988765 89999988
Q ss_pred EEccC
Q 001244 222 VFSPS 226 (1116)
Q Consensus 222 ~f~~~ 226 (1116)
.++..
T Consensus 87 ~lG~~ 91 (123)
T 4a0e_A 87 EVGFL 91 (123)
T ss_dssp EETTE
T ss_pred EEccE
Confidence 77544
No 180
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.65 E-value=0.00046 Score=75.70 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=29.1
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
..+.|||+||+| +++++||+++|++++.++..++
T Consensus 37 ~~~~vll~G~~G--tGKT~la~~i~~~~~~~~~~~~ 70 (324)
T 1hqc_A 37 PLEHLLLFGPPG--LGKTTLAHVIAHELGVNLRVTS 70 (324)
T ss_dssp CCCCCEEECCTT--CCCHHHHHHHHHHHTCCEEEEC
T ss_pred CCCcEEEECCCC--CCHHHHHHHHHHHhCCCEEEEe
Confidence 347899999999 9999999999999887766554
No 181
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.60 E-value=0.0013 Score=66.47 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
..+.||||||+|. +. .+..+.|...|+....++++|++++.
T Consensus 101 ~~~~vliiDe~~~-l~--~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADA-LT--ADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGG-SC--HHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhh-cC--HHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 5789999999999 43 24456677788887788888887773
No 182
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.59 E-value=8.7e-05 Score=80.17 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=50.9
Q ss_pred EecceEEEeccCccceeecCCCCCccceEEEEeecC--CcceEEEEEec-CcceEEECCeecCCCceEEee-CCCEEEE
Q 001244 149 MTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG--GPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVF 223 (1116)
Q Consensus 149 i~~~~~t~G~~~~cd~~l~d~~~s~~~C~l~~~~~~--g~~~a~Le~~~-~~G~v~vNg~~~~k~~~~~L~-~GdEi~f 223 (1116)
+....+||||+..||+.++|+ ++ .+.++.. +. |. .+||+.+ +||+|||||+++... +.|+ .||+|.|
T Consensus 89 ~~~~~itIG~~~~~dI~l~~~--~~-~~~~~~~-~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~i 159 (238)
T 1wv3_A 89 SIQDTMTIGPNAYDDMVIQSL--MN-AIIIKDF-QSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYV 159 (238)
T ss_dssp SSCSEEEEESSTTSSEECTTC--SS-CEEEECG-GGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEE
T ss_pred cCCceEEEeCCCCCeEEeCCC--ee-EEEEecc-cCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEE
Confidence 334499999999999999999 33 3444432 11 23 5689987 899999999999654 4799 9999988
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=0.00041 Score=71.25 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.1
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeee
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI 1013 (1116)
.+.|.||+|+|||+|++.|+..+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999998865443
No 184
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.54 E-value=6e-05 Score=82.74 Aligned_cols=27 Identities=44% Similarity=0.592 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~ 1010 (1116)
..+|||+||||||||++|.+||+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999998654
No 185
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.48 E-value=0.0003 Score=76.68 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=31.6
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhc---CCeEEEEecccCC
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLP 531 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f---~a~LL~lDs~~l~ 531 (1116)
..|||+||+| +++++|||+||+.+ +.+++.+|...+.
T Consensus 48 ~~~ll~G~~G--tGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 48 GSFLFLGPTG--VGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEEEESCSS--SSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred eEEEEECCCC--cCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 3699999999 99999999999998 6678888876543
No 186
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.45 E-value=0.00024 Score=99.10 Aligned_cols=118 Identities=22% Similarity=0.372 Sum_probs=72.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-CCeeeEEeccccccccccchHHHHHHHHHHH----hc------------CCCeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA----SK------------IAPSVV 1047 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is~seL~sk~~GesEk~Ir~lF~~A----~k------------~sPsII 1047 (1116)
++|||+||||||||+++..+...+ +.+++.++++.-.. ...+...++.. .+ -...||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998776555444 77788888775432 22333333320 00 112599
Q ss_pred EEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCc------CCCCCEEEEEEeCCC-----CCCcHHHHhhcCC
Q 001244 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAATNRP-----FDLDEAVVRRLPR 1112 (1116)
Q Consensus 1048 fIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~------k~~~kVLVIaTTNrp-----~~LD~ALlRRF~r 1112 (1116)
|||||+. +..+..+.+. ...++.+++..- +... ..-.++.+|||+|.| ..|++.++|||..
T Consensus 1379 FiDDiNm--p~~D~yGtQ~-~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v 1450 (3245)
T 3vkg_A 1379 FCDEINL--PSTDKYGTQR-VITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI 1450 (3245)
T ss_dssp EETTTTC--CCCCTTSCCH-HHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE
T ss_pred EecccCC--CCcccccccc-HHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE
Confidence 9999983 2332223333 234555555442 1111 112468899999988 4699999999954
No 187
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.43 E-value=0.00028 Score=78.17 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=37.7
Q ss_pred cccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCC
Q 001244 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1116)
Q Consensus 450 ~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a 520 (1116)
..+|++|... ++.+..|..+.... ..+.|||+||+| +++++|||+||+.++-
T Consensus 20 ~~~f~~i~G~--~~~~~~l~~~~~~~---------------~~~~vLl~G~~G--tGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQ--EDMKLALLLTAVDP---------------GIGGVLVFGDRG--TGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSC--HHHHHHHHHHHHCG---------------GGCCEEEECCGG--GCTTHHHHHHHHHSCC
T ss_pred CCCchhccCh--HHHHHHHHHHhhCC---------------CCceEEEECCCC--ccHHHHHHHHHHhCcc
Confidence 3678886544 66666655444321 123499999999 9999999999999874
No 188
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.43 E-value=6.5e-05 Score=86.30 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=61.5
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEcccccccc-CCC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG-RRE 1060 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg-~R~ 1060 (1116)
.+...++|+||+|+|||+|+++|+...+..++.+..+.- . ....+. .-.+..++|+||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHHHHhh
Confidence 344689999999999999999999998776655433221 0 011122 222346789999998864 221
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHh
Q 001244 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108 (1116)
Q Consensus 1061 ~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlR 1108 (1116)
-....... ....+...++|. +.|+++||+++.+ +++++
T Consensus 235 l~~~~~~~--~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 235 LPSGQGIN--NLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp CCCCSHHH--HHHTTHHHHHCS-------SCEEECCSSSCCE-EECCC
T ss_pred ccccCcch--HHHHHHHHhcCC-------CeEeeccCchhhH-HHhhc
Confidence 11101110 122334445542 4567778888877 45544
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.40 E-value=0.00026 Score=82.63 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhc-----CCeEEEEec
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDS 527 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f-----~a~LL~lDs 527 (1116)
.+.+||+||+| +++++||+|+|+++ +.+++.++.
T Consensus 130 ~~~lll~Gp~G--~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVG--LGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSS--SSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 56799999999 99999999999988 666655554
No 190
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.31 E-value=0.0059 Score=67.68 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcCC-hhhHHHHHHHHhcC-CCCEEEEeeccC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSHTQ 746 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~~-~e~~~~lk~~Le~L-~g~VviIgS~~~ 746 (1116)
.++.+++.+.. ...|.||+|||++.+.... .+....|...++.+ ..++.+|++++.
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 45566666644 2349999999999965543 67777777777665 347888888774
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.31 E-value=0.0011 Score=68.14 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se 1019 (1116)
.+..-++|+||||+|||+|+..+|...+..++.++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34467899999999999999999986677888887654
No 192
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.30 E-value=9.7e-05 Score=65.87 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=52.8
Q ss_pred chhhhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhH
Q 001244 826 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGL 904 (1116)
Q Consensus 826 ~Lpdlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvgl 904 (1116)
|+|+...|..|+++|+. ...+ .++|++.|+..+.||+|+||+.+|..|...++.+. ...|+.+++..++
T Consensus 1 plPd~~~R~~Il~~~l~--~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--------~~~i~~~d~~~Al 70 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSR--KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------RVHVTQEDFEMAV 70 (78)
T ss_dssp CCCCHHHHHHHHHHHHT--TSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------CSEECHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------CCCCCHHHHHHHH
Confidence 35555566666666643 2223 57899999999999999999999999999998842 3456666666666
Q ss_pred HHHH
Q 001244 905 NILQ 908 (1116)
Q Consensus 905 sdFq 908 (1116)
..+.
T Consensus 71 ~~v~ 74 (78)
T 3kw6_A 71 AKVM 74 (78)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 193
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.25 E-value=0.00092 Score=76.48 Aligned_cols=76 Identities=26% Similarity=0.308 Sum_probs=52.0
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc----c------------cchHHHHHHHHHHHhcC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----F------------GEGEKYVKAVFSLASKI 1042 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~----~------------GesEk~Ir~lF~~A~k~ 1042 (1116)
.+..-++|+||||+|||+||..+|..+ +.+++.++...-...+ . ...+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 344678999999999999999998775 6778888765422111 0 11233333333344456
Q ss_pred CCeEEEEcccccccc
Q 001244 1043 APSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1043 sPsIIfIDEID~Llg 1057 (1116)
.+.+||||.+..|..
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999999974
No 194
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.22 E-value=0.0012 Score=68.19 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=27.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
+...++|+||+|+|||+|++.++..+ +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34578999999999999999999654 555555543
No 195
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.20 E-value=0.00096 Score=79.32 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHH
Q 001244 430 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 509 (1116)
Q Consensus 430 ~r~~~~k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~ 509 (1116)
.+.+..++.+...|+-- ++.+..+..++.. .+.|||+|||| +++++
T Consensus 11 ~~~~~l~~~l~~~ivGq---------------~~~i~~l~~al~~-----------------~~~VLL~GpPG--tGKT~ 56 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYER---------------SHAIRLCLLAALS-----------------GESVFLLGPPG--IAKSL 56 (500)
T ss_dssp HHHHHHHHHHHTTCSSC---------------HHHHHHHHHHHHH-----------------TCEEEEECCSS--SSHHH
T ss_pred HHHHHHHHHHHhhhHHH---------------HHHHHHHHHHHhc-----------------CCeeEeecCch--HHHHH
Confidence 45566777777776544 4555555554432 24899999999 99999
Q ss_pred HHHHHHhhcCC
Q 001244 510 LAKALAKHFSA 520 (1116)
Q Consensus 510 LaKALA~~f~a 520 (1116)
||||||+.++.
T Consensus 57 LAraLa~~l~~ 67 (500)
T 3nbx_X 57 IARRLKFAFQN 67 (500)
T ss_dssp HHHHGGGGBSS
T ss_pred HHHHHHHHHhh
Confidence 99999998854
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0031 Score=70.84 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcc
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQ 768 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~ 768 (1116)
.++.+|+-+. ..+..++||||||+|.+. ++.-+|+.+. ....-.+++++||-.|.+|.
T Consensus 118 ~L~~~f~~~~-~~~~~~~ii~lDE~d~l~-~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d~------------------- 175 (318)
T 3te6_A 118 ALNFYITNVP-KAKKRKTLILIQNPENLL-SEKILQYFEK-WISSKNSKLSIICVGGHNVT------------------- 175 (318)
T ss_dssp HHHHHHHHSC-GGGSCEEEEEEECCSSSC-CTHHHHHHHH-HHHCSSCCEEEEEECCSSCC-------------------
T ss_pred HHHHHHHHhh-hccCCceEEEEecHHHhh-cchHHHHHHh-cccccCCcEEEEEEecCccc-------------------
Confidence 5555555431 134689999999999955 6555555554 22323457888888875433
Q ss_pred hhhccccCCCcccccccccCcchHHHhhhhcccc-ccccccCCchHHHHHHHHHHH
Q 001244 769 TALLDLAFPDNFSRLHDRSKETPKALKQISRLFP-NKVTIQLPQDEALLSDWKQQL 823 (1116)
Q Consensus 769 ~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFp-n~I~I~~P~DEa~LRRfe~ql 823 (1116)
|+. .+...+.++|. ..|.|++.+.+++...++..+
T Consensus 176 --------~~~------------~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 --------IRE------------QINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp --------CHH------------HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred --------chh------------hcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 110 01123555664 689999999999976555443
No 197
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.16 E-value=0.0025 Score=65.07 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhc-CCCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 690 INELFEVALNES-KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 690 i~~L~evl~~es-k~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
+..+++.+.... ...|.||+|||+|. + ..+..+.|...|+..+.++++|.+++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~vlviDe~~~-l--~~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 111 TRDLLDNVQYAPARGRFKVYLIDEVHM-L--SRHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGG-S--CHHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHHHHHhhhchhcCCceEEEEECccc-c--cHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 344444433222 25789999999999 3 345667788888887788888888773
No 198
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.15 E-value=0.0012 Score=75.17 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=52.5
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccccccc----------------cccchHHHHHHHHHHHhc
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASK 1041 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk----------------~~GesEk~Ir~lF~~A~k 1041 (1116)
..+..-++|+||||+|||+|+..+|..+ +..+++++....... .....+..+..+....+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 3445678999999999999999999875 667777776542210 011223333333334445
Q ss_pred CCCeEEEEcccccccc
Q 001244 1042 IAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1042 ~sPsIIfIDEID~Llg 1057 (1116)
..+.+|+||.+..+++
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 6789999999998874
No 199
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.12 E-value=0.0022 Score=66.27 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=24.4
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcC
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~ 519 (1116)
..+.|||+||+| .++++||+++|+++.
T Consensus 51 ~~~~~ll~G~~G--~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVK--SGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 357899999999 999999999998876
No 200
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.11 E-value=0.0015 Score=68.24 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHH--h-------CCeeeEEeccccccc-----c---cc----------------chH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATE--A-------GANFINISMSSITSK-----W---FG----------------EGE 1029 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~e--l-------g~pfI~Is~seL~sk-----~---~G----------------esE 1029 (1116)
+..-++|+||||+|||+|++.+|.. . +...+.++....... + +| ..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 4467899999999999999999985 2 456777765541000 0 00 011
Q ss_pred ---HHHHHHHHHHhcCCCeEEEEccccccccC
Q 001244 1030 ---KYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 1030 ---k~Ir~lF~~A~k~sPsIIfIDEID~Llg~ 1058 (1116)
..+..+...+....|.+|+|||+..++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 12333445555568999999999988743
No 201
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.10 E-value=0.00025 Score=64.87 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=49.2
Q ss_pred hhhhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHH
Q 001244 828 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1116)
Q Consensus 828 pdlk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsd 906 (1116)
|+.+.|..|+++|+. ...+ .++||+.|+..|.+|+|+||+.||+.|+..++.+. ...|+.+++..++..
T Consensus 11 Pd~~~R~~IL~~~l~--~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 11 PNEEARLDILKIHSR--KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------RVHVTQEDFEMAVAK 80 (86)
T ss_dssp CCHHHHHHHHHHHTT--TSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT--------CSEECHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHH
Confidence 445555566667654 2222 67899999999999999999999999999998743 234555555554443
No 202
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.10 E-value=0.0019 Score=75.75 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.3
Q ss_pred CceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001244 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1116)
Q Consensus 493 ~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lD 526 (1116)
+.|||+||+| +++++||++||+.++.++..+.
T Consensus 51 ~~vLL~GppG--tGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPG--TGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTT--SSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCC--CcHHHHHHHHHHHhCCCeEEEE
Confidence 6799999999 8999999999999987766554
No 203
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.07 E-value=0.0018 Score=73.51 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=51.5
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc----cc------------chHHHHHHHHHHHhcC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG------------EGEKYVKAVFSLASKI 1042 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~----~G------------esEk~Ir~lF~~A~k~ 1042 (1116)
.+..-++|+||||+|||+||..++... +..++.++...-.... .| ..+..+..+...++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 344679999999999999999998765 6677777755322110 11 1233333344445566
Q ss_pred CCeEEEEcccccccc
Q 001244 1043 APSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1043 sPsIIfIDEID~Llg 1057 (1116)
.|.+||||++..++.
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999999873
No 204
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.02 E-value=0.002 Score=72.09 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhc-----------CCeEEEEecccC
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHF-----------SARLLIVDSLLL 530 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f-----------~a~LL~lDs~~l 530 (1116)
.++.|||+||+| +++++||+++|+++ +.+++.++....
T Consensus 44 ~~~~vll~G~~G--~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 44 VKFSNLFLGLTG--TGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp CCCEEEEEECTT--SSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCCcEEEECCCC--CCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 356899999999 99999999999987 888888886544
No 205
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.00 E-value=0.00091 Score=90.14 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=71.9
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc----cc--------chHHHHHHHHHHHhc----
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 1041 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~----~G--------esEk~Ir~lF~~A~k---- 1041 (1116)
..+..-++|+|+||+|||+||..+|..+ +.++++++..+....+ +| ..+..+..++..++.
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 4566789999999999999999999887 5678998887654433 22 122234455555543
Q ss_pred CCCeEEEEcccccccc-C----CCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeC
Q 001244 1042 IAPSVVFVDEVDSMLG-R----RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1116)
Q Consensus 1042 ~sPsIIfIDEID~Llg-~----R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTN 1097 (1116)
..|++||||.|..+.. . +.....+....+.+.+++..|..+.. ..++.||++..
T Consensus 809 ~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAk--e~~v~VI~l~Q 867 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK--QSNTLLIFINQ 867 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH--TTTCEEEEEEC
T ss_pred cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHH--HhCCEEEEecc
Confidence 6899999999999975 1 11111122222334555555555443 24566666543
No 206
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.00 E-value=0.00089 Score=74.03 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=30.5
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhc---CCeEEEEec
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDS 527 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f---~a~LL~lDs 527 (1116)
..+.|||+||+| +++++||+++|+++ +.+++.++.
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 456899999999 99999999999998 777777764
No 207
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.99 E-value=0.0017 Score=90.81 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=76.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccccccccccchHHHHHHHHHHHhcCCCeEEEEccccccccCCCCCch
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL~sk~~GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~R~~~~~ 1064 (1116)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-+. ...+.++|.-+-.. -+..+||||+++ .
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~--- 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----E--- 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----C---
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----C---
Confidence 36789999999999999999999999999999986433 24566677666543 478899999987 2
Q ss_pred hHHHHHHHHHH-------HHH-----hc-CCCcCCCCCEEEEEEeCC----CCCCcHHHHhhcCC
Q 001244 1065 HEAMRKMKNEF-------MVN-----WD-GLRTKDKERVLVLAATNR----PFDLDEAVVRRLPR 1112 (1116)
Q Consensus 1065 ~~~lr~IlneL-------L~~-----Ld-gl~~k~~~kVLVIaTTNr----p~~LD~ALlRRF~r 1112 (1116)
.+.+..+.+++ ... +. |-.-.-+....|++|.|. ...|++++..||.-
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~ 734 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS 734 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE
Confidence 22222222211 111 11 211112345788889883 35799999999964
No 208
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.96 E-value=0.0035 Score=68.05 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=50.3
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCcccc
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 782 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~ 782 (1116)
..+.||+|||+|. +. .+..+.|...|+..+.++++|++++.++. +
T Consensus 101 ~~~~vliiDe~~~-l~--~~~~~~L~~~le~~~~~~~~i~~~~~~~~----------------------l---------- 145 (319)
T 2chq_A 101 APFKIIFLDEADA-LT--ADAQAALRRTMEMYSKSCRFILSCNYVSR----------------------I---------- 145 (319)
T ss_dssp CCCEEEEEETGGG-SC--HHHHHTTGGGTSSSSSSEEEEEEESCGGG----------------------S----------
T ss_pred CCceEEEEeCCCc-CC--HHHHHHHHHHHHhcCCCCeEEEEeCChhh----------------------c----------
Confidence 4588999999999 43 34456677778877788888888873221 1
Q ss_pred cccccCcchHHHhhhhccccccccccCCchHHHHHHHHHH
Q 001244 783 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1116)
Q Consensus 783 ~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~q 822 (1116)
.+.+.+++. .+.+++|.++++...+...
T Consensus 146 -----------~~~l~sr~~-~i~~~~~~~~~~~~~l~~~ 173 (319)
T 2chq_A 146 -----------IEPIQSRCA-VFRFKPVPKEAMKKRLLEI 173 (319)
T ss_dssp -----------CHHHHTTCE-EEECCCCCHHHHHHHHHHH
T ss_pred -----------chHHHhhCe-EEEecCCCHHHHHHHHHHH
Confidence 123555664 7899999988876555433
No 209
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.89 E-value=0.0015 Score=65.23 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
.-|+|.|+||+|||++|++||..++.+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4689999999999999999999999988876653
No 210
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.85 E-value=0.0073 Score=65.61 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
.+.||+|||+|. +. .+..+.|...|+..++++++|.+++.
T Consensus 107 ~~~viiiDe~~~-l~--~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADS-MT--AGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGG-SC--HHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECccc-CC--HHHHHHHHHHHhccCCCceEEEEeCC
Confidence 488999999999 43 24456677888888888888887763
No 211
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.75 E-value=0.0013 Score=67.90 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=22.9
Q ss_pred EEEEECCCCCchHHHHHHHHHHh---CCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA---GANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el---g~pfI~I 1015 (1116)
-++++||+|+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999987777654 5554443
No 212
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.74 E-value=0.0023 Score=71.43 Aligned_cols=75 Identities=21% Similarity=0.296 Sum_probs=50.9
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEeccccc---------cc------------ccc---chH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT---------SK------------WFG---EGE 1029 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~seL~---------sk------------~~G---esE 1029 (1116)
+..-++|+||||+|||+||..+|... +..+++++...-+ .. ++. ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 44679999999999999999999875 5677777765421 00 000 011
Q ss_pred ---HHHHHHHHHHhc-CCCeEEEEcccccccc
Q 001244 1030 ---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1030 ---k~Ir~lF~~A~k-~sPsIIfIDEID~Llg 1057 (1116)
..+..+...++. ..+.+|+||.+..++.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999999873
No 213
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.74 E-value=0.0018 Score=73.73 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=50.0
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccccc----cc-----------chHHHHHHHH-HHHhcC
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG-----------EGEKYVKAVF-SLASKI 1042 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~sk~----~G-----------esEk~Ir~lF-~~A~k~ 1042 (1116)
.+..-++|+|+||+|||+||..+|..+ +.+++.++...-.... .| .....+..++ ..++..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 344679999999999999999999775 6778888874321110 01 0111222222 233456
Q ss_pred CCeEEEEcccccccc
Q 001244 1043 APSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1043 sPsIIfIDEID~Llg 1057 (1116)
.+.+||||.+..|..
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 789999999998874
No 214
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.73 E-value=0.00082 Score=67.81 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=29.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|+|.|++|+|||++|+.||+.+|++|+..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999988754
No 215
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.70 E-value=0.0039 Score=70.31 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=50.3
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEecccccc-c----c---cc----------------ch
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-K----W---FG----------------EG 1028 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~seL~s-k----~---~G----------------es 1028 (1116)
.+..-++|+||||+|||+||..+|... +..+++++....+. . + +| ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 344678999999999999999999873 55777777654211 0 0 00 01
Q ss_pred H---HHHHHHHHHHhc--CCCeEEEEcccccccc
Q 001244 1029 E---KYVKAVFSLASK--IAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1029 E---k~Ir~lF~~A~k--~sPsIIfIDEID~Llg 1057 (1116)
+ ..+..+...++. ..+.+|+||.+..++.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 1 122333444555 6789999999999874
No 216
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.65 E-value=0.013 Score=68.53 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.+||.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999887
No 217
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.008 Score=65.39 Aligned_cols=41 Identities=37% Similarity=0.424 Sum_probs=32.1
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
..+.||+|||+|. +. .+..+.|...|+..+.++++|.+++.
T Consensus 109 ~~~~vliiDe~~~-l~--~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADA-LT--QDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGG-SC--HHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCc-CC--HHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4578999999999 43 35567788888888888888887773
No 218
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.56 E-value=0.0048 Score=64.66 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVA 1005 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA 1005 (1116)
+..-++|.||+|+|||+|++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 44678999999999999999998
No 219
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0083 Score=62.67 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=27.1
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
+..-++|+||||+|||+|+..+|... +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 44578999999999999998887654 556666554
No 220
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.55 E-value=0.0013 Score=67.68 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=30.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+...|+|.|++|+|||+++++||..++++|+..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999988654
No 221
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.022 Score=62.89 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=48.2
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCccccc
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 783 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~~ 783 (1116)
.+.||||||+|. +. .+..+.|...|+..+..+++|.+++.++. +
T Consensus 133 ~~~vliiDE~~~-l~--~~~~~~Ll~~le~~~~~~~~il~~~~~~~----------------------l----------- 176 (353)
T 1sxj_D 133 PYKIIILDEADS-MT--ADAQSALRRTMETYSGVTRFCLICNYVTR----------------------I----------- 176 (353)
T ss_dssp SCEEEEETTGGG-SC--HHHHHHHHHHHHHTTTTEEEEEEESCGGG----------------------S-----------
T ss_pred CceEEEEECCCc-cC--HHHHHHHHHHHHhcCCCceEEEEeCchhh----------------------C-----------
Confidence 457999999999 43 23446777888888777766666663221 1
Q ss_pred ccccCcchHHHhhhhccccccccccCCchHHHHHHHHHH
Q 001244 784 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1116)
Q Consensus 784 ~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~q 822 (1116)
.+.+.++|. .+.+.+|.+++....+...
T Consensus 177 ----------~~~l~sR~~-~i~~~~~~~~~~~~~l~~~ 204 (353)
T 1sxj_D 177 ----------IDPLASQCS-KFRFKALDASNAIDRLRFI 204 (353)
T ss_dssp ----------CHHHHHHSE-EEECCCCCHHHHHHHHHHH
T ss_pred ----------cchhhccCc-eEEeCCCCHHHHHHHHHHH
Confidence 123555564 7889999988887655543
No 222
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.49 E-value=0.014 Score=64.82 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcC-CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 691 NELFEVALNESK-SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 691 ~~L~evl~~esk-~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
..+++.+..... ..+.||+|||+|. +. .+..+.|...|+..++++++|++++.
T Consensus 105 ~~l~~~~~~~~~~~~~~vliiDe~~~-l~--~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 105 RDLLDNVQYAPARGRFKVYLIDEVHM-LS--RHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHHHTTSCCSSSSSEEEEEECGGG-SC--HHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHHHHHhhccccCCeEEEEEECcch-hc--HHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 344444433222 4689999999998 43 45677888899988889999988873
No 223
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.46 E-value=0.0026 Score=57.12 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=42.2
Q ss_pred hhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhcccccc
Q 001244 830 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1116)
Q Consensus 830 lk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~ 883 (1116)
...|..|+++|+. ...+ .++|++.|+..+.||+|+||+.+|+.|+..++.+.
T Consensus 3 ~~~R~~Il~~~l~--~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 3 RRQKRLIFSTITS--KMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp HHHHHHHHHHHHT--TSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred HHHHHHHHHHHhC--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3566778888764 2233 67899999999999999999999999999998743
No 224
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.44 E-value=0.019 Score=64.07 Aligned_cols=53 Identities=8% Similarity=0.015 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcCChhhHHHHHHHHhcCC----CCEEEEeeccC
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLP----SNVVVIGSHTQ 746 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~----g~VviIgS~~~ 746 (1116)
.++.+.+.+.. ...|.||+|||+|.+ ..+..+.|...++.+. .++.+|++++.
T Consensus 112 ~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 112 FLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 44455555543 356999999999994 5667777777776654 37888877763
No 225
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.44 E-value=0.0018 Score=63.89 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=28.4
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
-|+|.|++|+|||++++.|+..++++|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999999888655
No 226
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.38 E-value=0.011 Score=67.38 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=45.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh----CCeeeEEecc-ccc---------cccccchHHHHHHHHHHHhcCCCeEEEEc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~s-eL~---------sk~~GesEk~Ir~lF~~A~k~sPsIIfID 1050 (1116)
..++|.||+|+|||++.++|+..+ +..++.+.-+ ++. ....+.....+...+..|-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 468999999999999999999876 3444443211 111 00111112234557777778899999999
Q ss_pred ccc
Q 001244 1051 EVD 1053 (1116)
Q Consensus 1051 EID 1053 (1116)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 994
No 227
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.37 E-value=0.0017 Score=59.44 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=51.0
Q ss_pred hhcccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccccccCCCCCcccccccchhhhhHHHH
Q 001244 830 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1116)
Q Consensus 830 lk~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r~~~~i~~d~KLvIS~ESLkvglsdF 907 (1116)
...|..|+++|+. ...+ .++||+.|+..|.||+|+||..||..|...++.+.. ..|+.+++..++...
T Consensus 3 ~~~R~~Il~~~~~--~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~--------~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 3 LEGRANIFRIHSK--SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR--------KVATEKDFLKAVDKV 71 (88)
T ss_dssp SSHHHHHHHHHHT--TSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC--------SSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc--------ccCCHHHHHHHHHHH
Confidence 4567888888865 2233 678999999999999999999999999999998543 235555555554443
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.37 E-value=0.0084 Score=61.94 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.+..-+.|.||+|+|||+|++.|+...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344678999999999999999999854
No 229
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0077 Score=73.02 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=35.0
Q ss_pred chhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcCCe
Q 001244 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1116)
Q Consensus 461 se~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~ 521 (1116)
.|..|..|..+.+-.-. +.... .-......|||.|||| +++++|||+||+.++..
T Consensus 300 ~e~vk~al~~~l~~g~~-~~~~~---~~~r~~~~vLL~GppG--tGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 300 HWELKEALALALFGGVP-KVLED---TRIRGDIHILIIGDPG--TAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CHHHHHHHTTTTTCCCC-EETTT---TEECCSCCEEEEESSC--CTHHHHHHSSSTTCSCE
T ss_pred hHHHHHHHHHHHhCCCc-ccccC---CCcCCCcceEEECCCc--hHHHHHHHHHHHhCCCc
Confidence 36677777655542211 11111 1111223799999999 99999999999998655
No 230
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.35 E-value=0.0097 Score=67.02 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEEECCCCCchHHHHHHHHHHh-----CCeeeEEecccccc----cccc------------chHHHHHHHHHH---Hhc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KWFG------------EGEKYVKAVFSL---ASK 1041 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el-----g~pfI~Is~seL~s----k~~G------------esEk~Ir~lF~~---A~k 1041 (1116)
-++|+||||+|||+|+-.++... +..+++++..+-+. ..+| ..+...-.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999987776554 66788888754211 0011 122220112222 355
Q ss_pred CCCeEEEEcccccccc
Q 001244 1042 IAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1042 ~sPsIIfIDEID~Llg 1057 (1116)
..|.+|+||-|..|+.
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6799999999999975
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.017 Score=61.74 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=43.9
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccc-------cccccccch-----HHHHHHHHHHHhc----CCC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAP 1044 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~se-------L~sk~~Ges-----Ek~Ir~lF~~A~k----~sP 1044 (1116)
..-+|++||+|+|||+++..++..+ |..++.+.... +.+. .|-. ......+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3467889999999999998888777 55555553211 1111 1110 0112345555554 357
Q ss_pred eEEEEcccccc
Q 001244 1045 SVVFVDEVDSM 1055 (1116)
Q Consensus 1045 sIIfIDEID~L 1055 (1116)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999865
No 232
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.33 E-value=0.0074 Score=69.82 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=48.4
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEeccccccc---------------------ccc-----
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITSK---------------------WFG----- 1026 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~seL~sk---------------------~~G----- 1026 (1116)
.+..-++|+||||+|||+|+..++... +...++++....... ++.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 344679999999999999999877443 244677765432100 000
Q ss_pred -chHHHHHHHHHHHhcCCCeEEEEccccccccC
Q 001244 1027 -EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1116)
Q Consensus 1027 -esEk~Ir~lF~~A~k~sPsIIfIDEID~Llg~ 1058 (1116)
.....+..+...+....|.+|+||++-.++..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00122333444455568999999999988743
No 233
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.33 E-value=0.002 Score=64.71 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=28.1
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|+|.|+||+|||++|++||..++++|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5899999999999999999999999887643
No 234
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.31 E-value=0.0022 Score=64.56 Aligned_cols=32 Identities=47% Similarity=0.838 Sum_probs=29.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|+|+|+||+|||++++++|+.++++++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 46999999999999999999999999888654
No 235
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.31 E-value=0.028 Score=65.86 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=51.1
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-------------------c-cccchHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------------------K-WFGEGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-------------------k-~~GesEk~Ir~lF~~A 1039 (1116)
++.-|++.|++|+|||+++..||..+ |..+.-+++..... . ........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999877 66666665443211 0 0112344456677777
Q ss_pred hcCCCeEEEEcccccc
Q 001244 1040 SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~L 1055 (1116)
......+|+||...++
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7767899999988654
No 236
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.29 E-value=0.0023 Score=63.74 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=29.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|+|.|++|+|||++++.||..+|++|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999988754
No 237
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.25 E-value=0.0022 Score=64.67 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.3
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|+|.|+||+|||++|+.||..+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999999987654
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.24 E-value=0.058 Score=59.93 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=29.5
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
..+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 3455679999999999999999999765 567777664
No 239
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.22 E-value=0.0026 Score=64.13 Aligned_cols=33 Identities=33% Similarity=0.415 Sum_probs=29.0
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+.-|+|.|+||+|||++++.++..++++++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 357899999999999999999999998887643
No 240
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.22 E-value=0.026 Score=63.00 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcC-CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 689 AINELFEVALNESK-SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 689 ~i~~L~evl~~esk-~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
.++.+.+.+..... ...-||+|||+|. +. .+..|.|.+.||.-++++++|..+++
T Consensus 92 ~ir~l~~~~~~~~~~~~~kvviIdead~-l~--~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 92 AVREVTEKLNEHARLGGAKVVWVTDAAL-LT--DAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp HHHHHHHHTTSCCTTSSCEEEEESCGGG-BC--HHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred HHHHHHHHHhhccccCCcEEEEECchhh-cC--HHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 35556655543322 4578999999999 54 45678899999988888888888774
No 241
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.20 E-value=0.06 Score=59.62 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=51.3
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCcchhhccccCCCcccc
Q 001244 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 782 (1116)
Q Consensus 703 ~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~~~~~lD~a~p~~~~~ 782 (1116)
..|-||+|||++. +. .+..+.|...|+..+.++.+|.+++.++. +
T Consensus 133 ~~~~vlilDE~~~-L~--~~~~~~L~~~le~~~~~~~~Il~t~~~~~----------------------l---------- 177 (354)
T 1sxj_E 133 HRYKCVIINEANS-LT--KDAQAALRRTMEKYSKNIRLIMVCDSMSP----------------------I---------- 177 (354)
T ss_dssp -CCEEEEEECTTS-SC--HHHHHHHHHHHHHSTTTEEEEEEESCSCS----------------------S----------
T ss_pred CCCeEEEEeCccc-cC--HHHHHHHHHHHHhhcCCCEEEEEeCCHHH----------------------H----------
Confidence 3678999999999 54 45667788888888777766666653221 1
Q ss_pred cccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHH
Q 001244 783 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1116)
Q Consensus 783 ~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~ql 823 (1116)
.+.+.+++ ..+.|++|.++++..++....
T Consensus 178 -----------~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 178 -----------IAPIKSQC-LLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp -----------CHHHHTTS-EEEECCCCCHHHHHHHHHHHH
T ss_pred -----------HHHHHhhc-eEEecCCcCHHHHHHHHHHHH
Confidence 12355566 678999999998876665443
No 242
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.19 E-value=0.0026 Score=64.75 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=28.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHH-hCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e-lg~pfI~Is 1016 (1116)
..|+|+|+||+|||++++.+|.. +|++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 57999999999999999999999 798888754
No 243
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.19 E-value=0.017 Score=61.95 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeeeEEecccc
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~seL 1020 (1116)
.+..|+|.|+||+|||++|+.|+..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34689999999999999999999999876777776554
No 244
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.18 E-value=0.015 Score=63.86 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=29.2
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se 1019 (1116)
+.-|+|.||||+|||++|+.++..++..++.|++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 467999999999999999999999854556666533
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.16 E-value=0.0068 Score=67.19 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---------------C----CeeeEEeccccc-cc----c---cc--------
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK----W---FG-------- 1026 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---------------g----~pfI~Is~seL~-sk----~---~G-------- 1026 (1116)
.+..-++|+||||+|||+||..+|... | ..+++++...-+ .. + +|
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 344678999999999999999999763 2 567777765421 00 0 00
Q ss_pred --------chH---HHHHHHHHHHhc-CCCeEEEEcccccccc
Q 001244 1027 --------EGE---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1027 --------esE---k~Ir~lF~~A~k-~sPsIIfIDEID~Llg 1057 (1116)
..+ ..+..+....+. ..+.+|+||.+..++.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 011 123334444555 5689999999998863
No 246
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.15 E-value=0.0032 Score=65.66 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
+..|+|.|+||+|||++|+.||..++++++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35799999999999999999999999887764
No 247
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0033 Score=63.20 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++|+.|+..++++++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5689999999999999999999999887654
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.14 E-value=0.0028 Score=62.12 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=26.4
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
-|+|.|+||+|||++|+.| ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889988765
No 249
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.13 E-value=0.003 Score=65.58 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.1
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.+.|.||+|+|||+|++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 250
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.12 E-value=0.0034 Score=64.36 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++|+.|+..++++++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5699999999999999999999999887765
No 251
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.12 E-value=0.017 Score=65.42 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=29.8
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---------CCeeeEEeccc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---------g~pfI~Is~se 1019 (1116)
.+..-++|+||+|+|||+|++.++... +...++++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 344678999999999999999999886 24557776543
No 252
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.08 E-value=0.061 Score=59.98 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=45.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-------cc-------------ccchHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW-------------FGEGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-------k~-------------~GesEk~Ir~lF~~A 1039 (1116)
++.-++|.||+|+|||+++..||..+ +..+.-+++..... .| .+.....+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44678999999999999999999876 44554444322110 01 011222223345555
Q ss_pred hcCCCeEEEEccccc
Q 001244 1040 SKIAPSVVFVDEVDS 1054 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~ 1054 (1116)
....+.+|+||+...
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 666789999998864
No 253
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.08 E-value=0.0032 Score=62.47 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=28.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|+|.|++|+|||++|+.||..+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5899999999999999999999999887644
No 254
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.07 E-value=0.022 Score=61.75 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+..-++|+||+|+|||+|+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999654
No 255
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.06 E-value=0.0036 Score=67.50 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.3
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
-++|.||+|+|||+||++||..++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999999887764
No 256
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.06 E-value=0.0036 Score=63.33 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|+|.|+||+|||++|+.||..++++++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 57999999999999999999999998877643
No 257
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.04 E-value=0.0084 Score=64.38 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=27.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
..|++.|+||+|||++|-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 579999999999999999999887 777665554
No 258
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.04 E-value=0.01 Score=63.91 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHH---hCCeeeEEecccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 1020 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e---lg~pfI~Is~seL 1020 (1116)
.-|+|.|+||+|||++|+.|+.. .|++++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 56999999999999999999998 6888886665443
No 259
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.03 E-value=0.0033 Score=75.87 Aligned_cols=31 Identities=42% Similarity=0.490 Sum_probs=25.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~I 1015 (1116)
..++|.|+||||||+++.+++..+ +..++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 468999999999999999999876 5555544
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.03 E-value=0.0044 Score=61.56 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=27.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
..|.|.||+|+|||++++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 359999999999999999999999987665
No 261
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.99 E-value=0.004 Score=61.63 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.9
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|+|.|++|+|||++|+.+++.++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999998887643
No 262
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.94 E-value=0.0039 Score=64.61 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.3
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.|+|.||||+|||++|+.||..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999999887765
No 263
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.91 E-value=0.0054 Score=61.70 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=27.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++++.||+.+|++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999999877654
No 264
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.042 Score=61.13 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhcC-CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccCCCcccccCCCCCceeeccCCc
Q 001244 689 AINELFEVALNESK-SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSN 767 (1116)
Q Consensus 689 ~i~~L~evl~~esk-~~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~~d~~~~~~~~~~~~~~~~~~~ 767 (1116)
.++++.+.+....- ...-|++|||+|. |. .+..|+|.+.||.-++.+++|..++++..
T Consensus 66 ~ir~li~~~~~~p~~~~~kvviIdead~-lt--~~a~naLLk~LEep~~~t~fIl~t~~~~k------------------ 124 (305)
T 2gno_A 66 DIRTIKDFLNYSPELYTRKYVIVHDCER-MT--QQAANAFLKALEEPPEYAVIVLNTRRWHY------------------ 124 (305)
T ss_dssp HHHHHHHHHTSCCSSSSSEEEEETTGGG-BC--HHHHHHTHHHHHSCCTTEEEEEEESCGGG------------------
T ss_pred HHHHHHHHHhhccccCCceEEEeccHHH-hC--HHHHHHHHHHHhCCCCCeEEEEEECChHh------------------
Confidence 34555555533211 2346999999999 53 45678899999998888888888774211
Q ss_pred chhhccccCCCcccccccccCcchHHHhhhhccccccccccCCchHHHHHHHHHHH
Q 001244 768 QTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1116)
Q Consensus 768 ~~~~lD~a~p~~~~~~~~~~~~~~k~~~~i~klFpn~I~I~~P~DEa~LRRfe~ql 823 (1116)
+...|.++ .+.+++|.+++....+...+
T Consensus 125 -------------------------l~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 125 -------------------------LLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -------------------------SCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred -------------------------ChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 12346677 89999999988876655544
No 265
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.03 Score=58.39 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=48.7
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccccc-------------------------cc-------
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK-------------------------WF------- 1025 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~sk-------------------------~~------- 1025 (1116)
.+..-++|+|+||+|||++|..+|.+. +.+++.++...-... +.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 107 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhcc
Confidence 344678999999999999998876542 666666654321000 00
Q ss_pred ----------cchHHHHHHHHHHHhcCCCeEEEEcccccccc
Q 001244 1026 ----------GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1116)
Q Consensus 1026 ----------GesEk~Ir~lF~~A~k~sPsIIfIDEID~Llg 1057 (1116)
...+..+..+...+....+.+++||.+..+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~ 149 (251)
T 2zts_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred cchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhh
Confidence 00122344555566777889999999988753
No 266
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.89 E-value=0.005 Score=65.02 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++|+.||+.++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999999887765
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.88 E-value=0.0044 Score=62.83 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.-|+|.|+||+|||++|+.|++.++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999877754
No 268
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.88 E-value=0.0044 Score=64.06 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.3
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999999887765
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.87 E-value=0.004 Score=62.48 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC-----CeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg-----~pfI~I 1015 (1116)
.-|+|.|+||+|||++++.|+..++ ++++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 4689999999999999999999987 777653
No 270
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.86 E-value=0.05 Score=64.84 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=36.6
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHH
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
...++|.+...+.|.+.+... ....+-|+|+|++|+|||+||+.+++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 456899999999998876421 11235789999999999999999975
No 271
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.86 E-value=0.05 Score=57.14 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=65.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec--c-------cccccc-----------c--c----chHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM--S-------SITSKW-----------F--G----EGEKYVKAV 1035 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~--s-------eL~sk~-----------~--G----esEk~Ir~l 1035 (1116)
..|++|+++|.|||++|-++|..+ |..+..+.. . .++..+ . . +.+......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 369999999999999999999877 666555521 1 122221 0 0 012345556
Q ss_pred HHHHhcC----CCeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCCCCcHHHHhhcC
Q 001244 1036 FSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1116)
Q Consensus 1036 F~~A~k~----sPsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~~LD~ALlRRF~ 1111 (1116)
+..+++. ...+|+|||+-..+.-+-- . ..+++..+.. .+.+.-||.|+|.+ +++|+..-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l-~--------~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL-P--------LEEVISALNA----RPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS-C--------HHHHHHHHHT----SCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC-C--------HHHHHHHHHh----CcCCCEEEEECCCC---cHHHHHhCc
Confidence 6666543 4689999999654321111 0 1123333332 24567889999874 566665443
No 272
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.85 E-value=0.0047 Score=61.95 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=28.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++|+.++..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999999999999999887765
No 273
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.84 E-value=0.038 Score=64.53 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEec
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~ 1017 (1116)
.+..-++|.|+||+|||+|+..+|... |.+++.++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 445679999999999999999998765 557777664
No 274
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=95.83 E-value=0.004 Score=56.04 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=32.6
Q ss_pred cccchhhhhhhhhcCCC-CCCCchhhhccccccchhhHHHHHHHhhhccccc
Q 001244 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1116)
Q Consensus 832 ~R~nIl~Iht~l~~~~l-ecvDLeeLai~dk~LsgadIEkIV~sAaS~aL~r 882 (1116)
.|..|+++|+. ...+ .++||+.|+..+.||+|+||+.||..|+..++.+
T Consensus 2 ~R~~Il~~~l~--~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 2 ERRLIFGTIAS--KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51 (82)
T ss_dssp --------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 46778888864 2223 5789999999999999999999999999999874
No 275
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.82 E-value=0.013 Score=62.38 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.6
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
.+||+||+|+|||.+|.+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 589999999999999999999887766665543
No 276
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.81 E-value=0.043 Score=63.82 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=29.3
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEec
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~ 1017 (1116)
..+..-++|.|+||+|||++|..+|... |.+++.++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3455678999999999999999988764 567777665
No 277
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.80 E-value=0.0059 Score=62.50 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=29.0
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+.-|+|.|++|+|||++++.|++.+|++++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 357899999999999999999999998777654
No 278
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.79 E-value=0.0047 Score=61.87 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeee
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI 1013 (1116)
.-|+|.|+||+|||++|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999887
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.79 E-value=0.0052 Score=61.07 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=25.2
Q ss_pred eEEEEECCCCCchHHHHHHHHH-HhCCeeeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT-EAGANFIN 1014 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~-elg~pfI~ 1014 (1116)
.-|+|.|+||+|||++|+.|+. .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999999 56665554
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.79 E-value=0.0052 Score=63.08 Aligned_cols=32 Identities=31% Similarity=0.573 Sum_probs=28.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.-|+|.|++|+|||++|+.|+..+|+.++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 46999999999999999999999998777643
No 281
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.78 E-value=0.0047 Score=64.81 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=28.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++|+.||+.++++++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999999887754
No 282
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.78 E-value=0.054 Score=65.26 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=40.8
Q ss_pred CeEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC--CCcHHHHhhcCCeEE
Q 001244 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1044 PsIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~--~LD~ALlRRF~r~I~ 1115 (1116)
+-+|+|||+..|+.... ......+..+...- ....|.+|.+|.+|. .|+..++..|..+|.
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~ 406 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIA 406 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEE
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEE
Confidence 36899999998863211 12223333443321 245799999999997 899999988887764
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.78 E-value=0.0061 Score=65.13 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
++..|+|.||||+|||++|+.|++.++++++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 446899999999999999999999999877764
No 284
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.75 E-value=0.0047 Score=64.49 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=28.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999888765
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.69 E-value=0.0081 Score=60.00 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=27.9
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
...++|.|++|+|||++++.|+..+|..++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 35789999999999999999999998776653
No 286
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.59 E-value=0.044 Score=59.65 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.5
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEe
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 1016 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is 1016 (1116)
+..-++|.||||+|||+|++.||..+ |.+++.++
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34578999999999999999999776 43555443
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.59 E-value=0.067 Score=62.53 Aligned_cols=73 Identities=19% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc----------c------cc----cchHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------K------WF----GEGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s----------k------~~----GesEk~Ir~lF~~A 1039 (1116)
++.-++|.||+|+|||+++..||..+ |..+.-+++..... . +. ..........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45788999999999999999999877 66665555432110 0 00 01223344556666
Q ss_pred hcCCCeEEEEcccccc
Q 001244 1040 SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~L 1055 (1116)
....+.+|+||...++
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6667899999998654
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.58 E-value=0.0065 Score=61.35 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=30.6
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEeccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~se 1019 (1116)
...++|.||+|+|||+|++.|+...+...+.++..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 357899999999999999999998877777777554
No 289
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.55 E-value=0.0051 Score=64.19 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..|+|.|+||+|||++++.||+.++..++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4699999999999999999999999876653
No 290
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.50 E-value=0.0067 Score=63.00 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.4
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887765
No 291
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.46 E-value=0.15 Score=59.50 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=30.6
Q ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 981 ~~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
..+..-++|.|+||+|||++|..+|... |.+++.++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3455679999999999999999998776 6777777653
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.44 E-value=0.01 Score=62.37 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
.|+|.||||+||++.|+.||+.+|++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999887654
No 293
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.40 E-value=0.012 Score=59.24 Aligned_cols=32 Identities=28% Similarity=0.132 Sum_probs=28.6
Q ss_pred EEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
-|.|.|++|+|||++++.+++.+ |++++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 48899999999999999999998 898887753
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.39 E-value=0.012 Score=60.42 Aligned_cols=31 Identities=35% Similarity=0.686 Sum_probs=27.0
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
..-+.|.||+|+|||+|++.|+..+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3578999999999999999999999876654
No 295
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.37 E-value=0.015 Score=58.44 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=31.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~se 1019 (1116)
...|.|.|++|+|||++++.++..+ |++++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3578899999999999999999998 99999887543
No 296
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.32 E-value=0.013 Score=62.26 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.1
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
++-|+|.||||+||++.|+.||+.+|++.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3678899999999999999999999876553
No 297
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.31 E-value=0.012 Score=59.65 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.4
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
.|.|.|++|+|||++++.||+.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987764
No 298
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.27 E-value=0.01 Score=67.62 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
.+|+|.|++|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 479999999999999999999999988855
No 299
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.13 E-value=0.041 Score=56.00 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.++++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999888777654
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.13 E-value=0.0093 Score=59.77 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=28.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC---CeeeEEecccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI 1020 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~seL 1020 (1116)
+-|+|.|+||+|||++|+.|++.++ +++..++..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 3589999999999999999999885 34555554443
No 301
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.11 E-value=0.014 Score=65.76 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
..|+|.||+|+|||+||+.||+.++..++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999999999999888653
No 302
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.10 E-value=0.084 Score=67.66 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=37.6
Q ss_pred cccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHH
Q 001244 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 948 fddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
...+.|.+...++|.+.+... ....+-|.|+|+.|+|||+||+.+++.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 356899999999998877421 112356889999999999999999876
No 303
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.10 E-value=0.015 Score=60.98 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.9
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999999876654
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.08 E-value=0.017 Score=59.96 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=27.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
..|.|.||+|+|||++++.|+..+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 368999999999999999999999987765
No 305
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.07 E-value=0.076 Score=62.63 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEecc
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~s 1018 (1116)
.+..-++|.|+||+|||+||..+|... |.+++.++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 344678999999999999999998776 4567776653
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.04 E-value=0.014 Score=63.44 Aligned_cols=71 Identities=25% Similarity=0.354 Sum_probs=42.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhC----CeeeEEec--cccc--------cccccchHHHHHHHHHHHhcCCCeEEE
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISM--SSIT--------SKWFGEGEKYVKAVFSLASKIAPSVVF 1048 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg----~pfI~Is~--seL~--------sk~~GesEk~Ir~lF~~A~k~sPsIIf 1048 (1116)
+..-++|.||+|+|||+|+++|+..+. ..++...- ..+. ...+|.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 335689999999999999999998652 22222211 0000 001111112234555566556899999
Q ss_pred Ecccc
Q 001244 1049 VDEVD 1053 (1116)
Q Consensus 1049 IDEID 1053 (1116)
+||.-
T Consensus 104 lDEp~ 108 (261)
T 2eyu_A 104 VGEMR 108 (261)
T ss_dssp ESCCC
T ss_pred eCCCC
Confidence 99983
No 307
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.03 E-value=0.012 Score=60.32 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.8
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|.|.|++|+|||++++.||. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 898887654
No 308
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.03 E-value=0.018 Score=58.23 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
|.|.|++|+|||++++.|++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999999 998886543
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.01 E-value=0.016 Score=59.04 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=28.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-CCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is~ 1017 (1116)
.-|.|.|++|+|||++++.|++.+ |++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 569999999999999999999998 687777653
No 310
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.97 E-value=0.1 Score=57.99 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=31.8
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEeeccC
Q 001244 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1116)
Q Consensus 704 ~P~ILfidDie~~l~~~~e~~~~lk~~Le~L~g~VviIgS~~~ 746 (1116)
.+-|++|||+|. +. .+..+.|...|+..+..+++|..+|.
T Consensus 110 ~~~viiiDe~~~-l~--~~~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 110 GFKLIILDEADA-MT--NAAQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp SCEEEEETTGGG-SC--HHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEeCCCC-CC--HHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 478999999998 54 35567788889988888888887773
No 311
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.89 E-value=0.13 Score=61.44 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=37.2
Q ss_pred eEEEEccccccccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCCCC--CCcHHHHhhcCCeEE
Q 001244 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRTC 1115 (1116)
Q Consensus 1045 sIIfIDEID~Llg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNrp~--~LD~ALlRRF~r~I~ 1115 (1116)
-+|+|||...++.. .......++..+...-. ...+.+|.+|.++. .|+..++..|..+|.
T Consensus 299 ivlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~ 360 (512)
T 2ius_A 299 IVVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIA 360 (512)
T ss_dssp EEEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEE
T ss_pred EEEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEE
Confidence 38999999877521 01122233333332211 23688888999887 689988888877664
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.87 E-value=0.015 Score=59.09 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=27.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+..|.|.|++|+|||++++.||.. |++++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 467899999999999999999998 88777644
No 313
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.76 E-value=0.24 Score=55.53 Aligned_cols=55 Identities=13% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEcchhhhhcC---ChhhHHHHHHHHhcCC-----CCEEEEeecc
Q 001244 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG---NNDAYGALKSKLENLP-----SNVVVIGSHT 745 (1116)
Q Consensus 689 ~i~~L~evl~~esk~~P~ILfidDie~~l~~---~~e~~~~lk~~Le~L~-----g~VviIgS~~ 745 (1116)
+++.|.+.+.. ...|+||+|||++.+... ..+....|...+..+. .++++|++++
T Consensus 125 ~~~~l~~~l~~--~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~ 187 (412)
T 1w5s_A 125 ILKALVDNLYV--ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVAS 187 (412)
T ss_dssp HHHHHHHHHHH--HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEE
T ss_pred HHHHHHHHHHh--cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEec
Confidence 45556665542 357999999999995432 4566666666676665 5788887765
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.74 E-value=0.02 Score=58.28 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.8
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
.|.|.|++|+|||++++.||..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998887643
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.73 E-value=0.03 Score=57.05 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=26.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCe--eeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGAN--FINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~p--fI~I 1015 (1116)
.-|+|.|+||+|||++|+.|++.++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 468999999999999999999998763 5443
No 316
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.70 E-value=0.036 Score=63.29 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhC----CeeeEEecc-cc--------c-cccccchHHHHHHHHHHHhcCCCeEEE
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SI--------T-SKWFGEGEKYVKAVFSLASKIAPSVVF 1048 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg----~pfI~Is~s-eL--------~-sk~~GesEk~Ir~lF~~A~k~sPsIIf 1048 (1116)
+...++|.||+|+|||+++++|+..+. ..++.+..+ ++ . ...+|.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 345789999999999999999998762 334333211 10 0 000111112234455666667899999
Q ss_pred Ecccc
Q 001244 1049 VDEVD 1053 (1116)
Q Consensus 1049 IDEID 1053 (1116)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99994
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.66 E-value=0.031 Score=57.40 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccc
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL 1020 (1116)
+..-|.|.||+|+|||+++++||..+ |...+.++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 34678899999999999999999988 555446665443
No 318
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.57 E-value=0.12 Score=60.17 Aligned_cols=93 Identities=20% Similarity=0.330 Sum_probs=52.7
Q ss_pred CCcccccCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEecc-ccc
Q 001244 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 1021 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~s-eL~ 1021 (1116)
.++++++-.......+..++. .+..-++|.||+|+|||++.++|+..+. ..++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~---------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK---------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT---------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 456777655555555544421 1224589999999999999999999873 233333211 110
Q ss_pred c-----ccccch-HHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 1022 S-----KWFGEG-EKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 1022 s-----k~~Ges-Ek~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
. ..+... .......+..+-...|.+|++.||.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 001111 1122333444455689999999864
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.56 E-value=0.012 Score=60.34 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=25.2
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeee
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI 1013 (1116)
+.-|+|.|++|+|||++++.|++.++.+++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999998854433
No 320
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.55 E-value=0.091 Score=63.78 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+.+++.|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 369999999999999888777554
No 321
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.52 E-value=0.025 Score=60.01 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=27.0
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
+..+.|.||+|+|||++++.|++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3579999999999999999999999876543
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.52 E-value=0.11 Score=52.12 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.2
Q ss_pred eEEEEECCCCCchHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKA 1003 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArA 1003 (1116)
.-+.|.||+|+|||+|+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5688999999999999994
No 323
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.47 E-value=0.068 Score=60.49 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
.+..-++|.|+||+|||++|..+|..+ +.++..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 444679999999999999999998875 677776654
No 324
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.44 E-value=0.021 Score=59.26 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=28.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|.|+|++|+|||++++.++..+|++++..|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 46889999999999999999999999887754
No 325
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.43 E-value=0.05 Score=56.30 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 1019 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~se 1019 (1116)
..-|+|.|++|+|||++++.|+..+ |.+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3578999999999999999999876 46677776443
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.42 E-value=0.017 Score=59.23 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.5
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.|.|.|++|+|||++++.||. +|++++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 578999999999999999998 88887653
No 327
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.41 E-value=0.035 Score=57.58 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=21.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.|+|.||+|+|||+|++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 49999999999999999998775
No 328
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.39 E-value=0.03 Score=60.15 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
..|.|.||+|+|||++++.||+.++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987754
No 329
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.35 E-value=0.092 Score=58.38 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=59.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CC-eeeEEeccccccccccchHHHHHHHHHHHh----cCCCeEEEEccccc-c
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDS-M 1055 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~-pfI~Is~seL~sk~~GesEk~Ir~lF~~A~----k~sPsIIfIDEID~-L 1055 (1116)
..+||+||+|.||+..+++|++.+ ++ ++..+... + +..++++++.+. -....||+|||++. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 479999999999999999999876 43 22222111 1 122344444443 23457999999997 6
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhcCCCcCCCCCEEEEEEeCC-----CCCCcHHHHhhc
Q 001244 1056 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRL 1110 (1116)
Q Consensus 1056 lg~R~~~~~~~~lr~IlneLL~~Ldgl~~k~~~kVLVIaTTNr-----p~~LD~ALlRRF 1110 (1116)
- ....+.|+..+...+ ...++|+++++. ...+-++|.+|.
T Consensus 90 ~------------~~~~~aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~ 134 (343)
T 1jr3_D 90 N------------AAINEQLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRS 134 (343)
T ss_dssp C------------TTHHHHHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTC
T ss_pred C------------hHHHHHHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCc
Confidence 2 123345666665432 234455555431 234666776654
No 330
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.35 E-value=0.021 Score=64.66 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
.-|+|.||+|+|||+|+..||+.++..||..|.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4689999999999999999999999888887654
No 331
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.35 E-value=0.034 Score=59.69 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=27.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
...|.|.||+|+|||++++.||+.+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3568899999999999999999999987664
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.32 E-value=0.015 Score=59.64 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
.-|+|.|++|+|||++++.|++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999999999999874
No 333
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.28 E-value=0.032 Score=59.63 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=30.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCee--------eEEeccccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANF--------INISMSSIT 1021 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pf--------I~Is~seL~ 1021 (1116)
.-|.|.|++|+|||++|+.|+..+++++ +.+++..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 5689999999999999999999999874 356666554
No 334
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.26 E-value=0.028 Score=60.83 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=29.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|.|.|++|+|||++++.||..+|.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999999888754
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.18 E-value=0.048 Score=55.07 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=29.1
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEeccc
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~se 1019 (1116)
+...|+|.|++|+|||++++.+|..+ +..++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 34678999999999999999999987 55565565433
No 336
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.93 E-value=0.035 Score=57.53 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=27.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
.-|.|.|++|+|||++++.|+. +|++++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 89888765
No 337
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.87 E-value=0.033 Score=57.55 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=28.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
..|.|.|++|+|||++++.|+..+|++++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 35899999999999999999999998887643
No 338
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.81 E-value=0.026 Score=63.42 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=45.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEeccc-cc-----c--ccccchHHHHHHHHHHHhcCCCeEEEEcccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-IT-----S--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~se-L~-----s--k~~GesEk~Ir~lF~~A~k~sPsIIfIDEID 1053 (1116)
..++|.||+|+|||+|+++|+.... .-.+.+.... +. . .++.......+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998873 2344443321 10 0 0220012234555666777889999999985
No 339
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.81 E-value=0.027 Score=61.27 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=26.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-CCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is 1016 (1116)
.-|+|.|+||+|||++|+.|+..+ ++.++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 468999999999999999999974 76666443
No 340
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.81 E-value=0.18 Score=55.77 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEecc
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~s 1018 (1116)
+...++|.||+|+|||+++..||..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44678999999999999999999765 5555555543
No 341
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.79 E-value=0.051 Score=57.35 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=28.3
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
+...|.|.|++|+|||++++.||..+|++++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 33578999999999999999999999988775
No 342
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.79 E-value=0.041 Score=61.70 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=30.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
.-|+|.||+|+|||+||..+|+.++..++..|.-
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 5688999999999999999999999888877654
No 343
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.72 E-value=0.12 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.2
Q ss_pred eEEEEECCCCCchHHHH-HHHHHH
Q 001244 985 KGILLFGPPGTGKTMLA-KAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA-rAIA~e 1007 (1116)
+.+++.+|+|+|||..+ ..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 46999999999999863 334443
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.65 E-value=0.062 Score=62.15 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+.-|+|.|+||+|||++|+.++..+++.++..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 467889999999999999999999987766543
No 345
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=93.64 E-value=0.037 Score=70.76 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=59.6
Q ss_pred CCCCcccccccCcccccCCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCcC
Q 001244 584 LPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCE 663 (1116)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~gdrv~~vg~~~~~~~~~~~~~~p~~g~~g~v~l~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~ 663 (1116)
+.++..+..-+..+.|.-||||.||.++.+ -+.|.||.|+-.--.+..--+-|.||.+.-.|++|++.|+
T Consensus 1051 llkP~~a~~~L~~Q~F~LGDRVv~VqdsG~----------VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrcs 1120 (1155)
T 3pie_A 1051 ILNAESSYVLLRSQRFHLGDRVMYIQDSGK----------VPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQ 1120 (1155)
T ss_pred eeCHHHhhccccCCcccCCCeEEEecCCCC----------CccccceEEEEEecCCCceEEEEEeccCccCCCccccccc
Confidence 334444444467899999999999997553 4689999998775545455689999999999999999999
Q ss_pred CCCCcc
Q 001244 664 DDHGFF 669 (1116)
Q Consensus 664 ~~~~~~ 669 (1116)
+..|.-
T Consensus 1121 ~~RG~~ 1126 (1155)
T 3pie_A 1121 TRRGLG 1126 (1155)
T ss_pred cccccc
Confidence 988743
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.57 E-value=0.032 Score=57.34 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=28.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh-CCeeeEEe
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el-g~pfI~Is 1016 (1116)
+..-|.|.|++|+|||++++.|+..+ ++.++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 34568899999999999999999988 67666544
No 347
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.48 E-value=0.46 Score=56.52 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=27.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
++..|+|.|++|+|||+++..||..+ |..+.-+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45789999999999999999999776 666665555
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.44 E-value=0.066 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998763
No 349
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.42 E-value=0.044 Score=59.93 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=27.5
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEe
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is 1016 (1116)
+.-|.|.|++|+|||++|+.|+ .+|++++..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 3578999999999999999999 6898877653
No 350
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.37 E-value=0.29 Score=59.55 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 953 Gldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
-.+.+++++..++.. ++ -.||.||||||||+++..+..++
T Consensus 190 LN~~Q~~AV~~al~~--------------~~--~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ--------------KE--LAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CCHHHHHHHHHHHHC--------------SS--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC--------------CC--ceEEECCCCCCHHHHHHHHHHHH
Confidence 356777777766531 11 47999999999998555554444
No 351
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.35 E-value=0.7 Score=54.93 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+..-++|.|++|+|||+|++.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34678899999999999999999876
No 352
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.31 E-value=0.21 Score=59.57 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=34.0
Q ss_pred cCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHH
Q 001244 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 952 gGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
.|.+..++.|.+.+.. .. ....+.|.|+|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~---------~~--~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE---------MC--DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHH---------HT--TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc---------cc--CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3889888888887742 10 11236788999999999999999997
No 353
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.27 E-value=0.045 Score=62.00 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
.-|+|.||+|+|||+||+.||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368899999999999999999999977776654
No 354
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.25 E-value=0.4 Score=50.36 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.0
Q ss_pred eEEEEECCCCCchHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVA 1005 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA 1005 (1116)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998665554
No 355
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.15 E-value=0.048 Score=56.13 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
..-|+|.||+|+|||++++.|+..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35699999999999999999999874
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.10 E-value=0.76 Score=50.79 Aligned_cols=72 Identities=19% Similarity=0.074 Sum_probs=46.0
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-------cc---------cc----chHHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW---------FG----EGEKYVKAVFSLAS 1040 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-------k~---------~G----esEk~Ir~lF~~A~ 1040 (1116)
+.-+++.|++|+|||+++..+|..+ +..+.-+++..... .| .+ .....+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999877 55666555432110 00 01 12223345666665
Q ss_pred cCCCeEEEEcccccc
Q 001244 1041 KIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1041 k~sPsIIfIDEID~L 1055 (1116)
.....+|+||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455689999986544
No 357
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.09 E-value=0.065 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCC
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGA 1010 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~ 1010 (1116)
-++|.||+|+|||+|++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 358
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.08 E-value=0.06 Score=60.53 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
.-|+|.||+|+|||+||..||+.++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3578999999999999999999998877776644
No 359
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.04 E-value=0.055 Score=56.34 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.3
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
-|.|.|++|+|||++++.||+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
No 360
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.76 E-value=0.059 Score=56.92 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=27.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
.++|+|.||+|+|||+||.++++... .++..|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 46899999999999999999998876 6665543
No 361
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.63 E-value=0.34 Score=49.90 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=31.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHccccChhhhhcCCC--CCCCeEEEEECCCCCchHHH-HHHHHHH
Q 001244 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTML-AKAVATE 1007 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~lpl~~pelf~~~~l--~~p~~gILL~GPPGTGKT~L-ArAIA~e 1007 (1116)
..+|++++-.+...+.+.+.- . ..+..++...+ ....+.+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g-~--~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG-F--EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT-C--CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC-C--CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 346777776666666665431 1 11110100000 00114699999999999986 3344443
No 362
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.62 E-value=0.15 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=18.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..+++.+|+|+|||..+...+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 479999999999999766554443
No 363
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.56 E-value=0.17 Score=60.39 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC---CeeeEEeccc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 1019 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~se 1019 (1116)
+.-|+|.|.||+|||++|+.||..++ .....++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 35789999999999999999999984 4444455443
No 364
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.55 E-value=0.066 Score=54.39 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.||+|+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999877
No 365
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.46 E-value=0.31 Score=57.51 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 469999999999999999988765
No 366
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.44 E-value=0.28 Score=49.70 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.1
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
+++++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 469999999999997444
No 367
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.36 E-value=0.17 Score=53.14 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=42.3
Q ss_pred CeEEEEECCCCCchH-HHHHHHHHHh--CCeeeEEeccccccccccchH------------HHHHHHHHHHhcCCCeEEE
Q 001244 984 CKGILLFGPPGTGKT-MLAKAVATEA--GANFINISMSSITSKWFGEGE------------KYVKAVFSLASKIAPSVVF 1048 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT-~LArAIA~el--g~pfI~Is~seL~sk~~GesE------------k~Ir~lF~~A~k~sPsIIf 1048 (1116)
.+=.++|||.|+||| +|.+++.+.. +..++.+... +...+...-. .....++...+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 356789999999999 7999988766 6677766633 2111110000 11122333332 247999
Q ss_pred Ecccccc
Q 001244 1049 VDEVDSM 1055 (1116)
Q Consensus 1049 IDEID~L 1055 (1116)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999866
No 368
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.36 E-value=0.084 Score=61.19 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
.-|+|.||+|+|||+||..||..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458899999999999999999999887777654
No 369
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.30 E-value=0.081 Score=63.00 Aligned_cols=69 Identities=26% Similarity=0.406 Sum_probs=44.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEeccc-ccc---ccc--------cchHHHHHHHHHHHhcCCCeEEEEc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KWF--------GEGEKYVKAVFSLASKIAPSVVFVD 1050 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~se-L~s---k~~--------GesEk~Ir~lF~~A~k~sPsIIfID 1050 (1116)
.+++|.||+|+|||+++++|+.... ...+.+.... +.. .++ +.....+......+-+..|.+|+++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998873 3445544322 210 000 1111234455556667889999999
Q ss_pred ccc
Q 001244 1051 EVD 1053 (1116)
Q Consensus 1051 EID 1053 (1116)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 370
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.26 E-value=0.37 Score=61.26 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCchHHHHHHHHHH
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..-++|.||.|+|||++.+.|+..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 356899999999999999998743
No 371
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.25 E-value=0.066 Score=54.56 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=49.4
Q ss_pred HHHHHhcccCCCcccccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHH
Q 001244 436 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 515 (1116)
Q Consensus 436 k~~l~~~vv~~~~i~vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA 515 (1116)
+..++..-++.+--..+|++|-+. +.+.+.++-. +--.+... ... ..++.|||+||+| .++++||+|||
T Consensus 7 ~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~-~~~~~~~~-----~~~--~~~~~~~l~G~~G--tGKT~la~~i~ 75 (202)
T 2w58_A 7 ESLIQSMFMPREILRASLSDVDLN-DDGRIKAIRF-AERFVAEY-----EPG--KKMKGLYLHGSFG--VGKTYLLAAIA 75 (202)
T ss_dssp HHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHHH-HHHHHHHC-----CSS--CCCCEEEEECSTT--SSHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHHH-HHHHHHHh-----hhc--cCCCeEEEECCCC--CCHHHHHHHHH
Confidence 344555556655567799998654 2233323222 11111111 000 0137899999999 99999999999
Q ss_pred hhc---CCeEEEEecc
Q 001244 516 KHF---SARLLIVDSL 528 (1116)
Q Consensus 516 ~~f---~a~LL~lDs~ 528 (1116)
+++ +.+++.++..
T Consensus 76 ~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 76 NELAKRNVSSLIVYVP 91 (202)
T ss_dssp HHHHTTTCCEEEEEHH
T ss_pred HHHHHcCCeEEEEEhH
Confidence 988 5666666543
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.23 E-value=1 Score=49.80 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+..-+.|.||+|+|||++++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678899999999999999999876
No 373
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.23 E-value=0.078 Score=54.97 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
..-+.|.||+|+|||+|++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998873
No 374
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.17 E-value=0.087 Score=54.04 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=26.2
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC--CeeeE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG--ANFIN 1014 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg--~pfI~ 1014 (1116)
..-+.|.||+|+|||+|++.|+..++ +.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 35688999999999999999999987 55554
No 375
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.17 E-value=0.42 Score=49.65 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc--------ccccccccch-----HHHHHHHHHHHhcCCCeEEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVVF 1048 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s--------eL~sk~~Ges-----Ek~Ir~lF~~A~k~sPsIIf 1048 (1116)
+-.+++||.|+|||+.+..+|+.+ |..++-+... .+.+. .|.. .....++++.+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 457899999999999888888776 5555544311 11111 1100 0011245555432 357999
Q ss_pred Ecccccc
Q 001244 1049 VDEVDSM 1055 (1116)
Q Consensus 1049 IDEID~L 1055 (1116)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999865
No 376
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.13 E-value=0.091 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=21.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.||+|+|||+|++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999875
No 377
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.97 E-value=0.1 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.||+|+|||+|++.|+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999999875
No 378
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.90 E-value=0.53 Score=55.84 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=48.4
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccc----cc-------------c--ccc---------chHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TS-------------K--WFG---------EGEKY 1031 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL----~s-------------k--~~G---------esEk~ 1031 (1116)
+..-++|.||+|+|||+|++.++... |-..+.+...+- .. . ... .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 33578999999999999999999765 444555443221 00 0 000 12345
Q ss_pred HHHHHHHHhcCCCeEEEEccccccc
Q 001244 1032 VKAVFSLASKIAPSVVFVDEVDSML 1056 (1116)
Q Consensus 1032 Ir~lF~~A~k~sPsIIfIDEID~Ll 1056 (1116)
.+.++..+....|.+|+||-+..|.
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHH
Confidence 5667777777889999999666553
No 379
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.72 E-value=0.11 Score=50.68 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=34.2
Q ss_pred CCCCceeeeCCCCchHHHHHHHHHHHhhc---CCeEEEEecccCCC
Q 001244 490 TMCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 532 (1116)
Q Consensus 490 ~~~~~ILLsGp~gsE~Yqe~LaKALA~~f---~a~LL~lDs~~l~g 532 (1116)
.....|||+||+| +++++|||||+++. +.+++ +|...+..
T Consensus 22 ~~~~~vll~G~~G--tGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 22 ETDIAVWLYGAPG--TGRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp TCCSCEEEESSTT--SSHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCCEEEECCCC--CCHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 4556799999999 89999999999987 78888 88876655
No 380
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.65 E-value=0.18 Score=51.90 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
..-+.|.|++|+|||++++.|+..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3568899999999999999999876 6666665443
No 381
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.61 E-value=0.49 Score=59.08 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977776554
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.60 E-value=0.91 Score=46.26 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..|+|.|++|+|||+|+.++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999999765
No 383
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.59 E-value=1.2 Score=51.73 Aligned_cols=73 Identities=21% Similarity=0.150 Sum_probs=45.3
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-------c---------cc-c---chHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K---------WF-G---EGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-------k---------~~-G---esEk~Ir~lF~~A 1039 (1116)
++..+++.|++|+|||+++..||..+ +..+.-+++..... . +. + .........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999877 55555555432110 0 00 0 1122235566666
Q ss_pred hcCCCeEEEEcccccc
Q 001244 1040 SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~L 1055 (1116)
+.....+|+||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5445579999966543
No 384
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.57 E-value=1.7 Score=48.60 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEec
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~ 1017 (1116)
++.-++|.|++|+|||+++..||..+ +..+.-+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45678999999999999999999876 555555543
No 385
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.56 E-value=0.56 Score=59.78 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.6
Q ss_pred eEEEEECCCCCchHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
.-++|.||.|+|||++.+.||.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999954
No 386
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.56 E-value=0.12 Score=53.47 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
+..-+.|.||+|+|||+|++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 335788999999999999999999884
No 387
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.46 E-value=0.15 Score=59.59 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
+..|+|+|++|+|||+++..||..+ |..+.-+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4679999999999999999999877 5556655543
No 388
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.41 E-value=0.4 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
++.-+.|.||+|+|||++++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999877
No 389
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.40 E-value=0.23 Score=52.94 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=39.5
Q ss_pred ccccccccccchhHHHHHHhhhhhhccccccccccCCCCCCCCceeeeCCCCchHHHHHHHHHHHhhcC---CeEEEEec
Q 001244 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS---ARLLIVDS 527 (1116)
Q Consensus 451 vsf~~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~L~~~~~~ILLsGp~gsE~Yqe~LaKALA~~f~---a~LL~lDs 527 (1116)
.||++|-. -|+..+.++-.+..+ ......|||+||+| +++++|||||+++.. .+++.++.
T Consensus 3 ~~f~~~ig-~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~G--tGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 3 EYKDNLLG-EANSFLEVLEQVSHL--------------APLDKPVLIIGERG--TGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp -------C-CCHHHHHHHHHHHHH--------------TTSCSCEEEECCTT--SCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred ccccccee-CCHHHHHHHHHHHHH--------------hCCCCCEEEECCCC--CcHHHHHHHHHHhcCccCCCeEEEec
Confidence 57888743 355544444332221 11246899999999 999999999999985 78999987
Q ss_pred ccC
Q 001244 528 LLL 530 (1116)
Q Consensus 528 ~~l 530 (1116)
+.+
T Consensus 66 ~~~ 68 (265)
T 2bjv_A 66 AAL 68 (265)
T ss_dssp GGS
T ss_pred CCC
Confidence 765
No 390
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.31 E-value=1 Score=46.24 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+.+++.+|+|+|||..+-..+...
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 469999999999998665555443
No 391
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.28 E-value=0.74 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.4
Q ss_pred CCeEEEEECCCCCchHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAV 1004 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAI 1004 (1116)
+...++|.||+|+|||+|++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4467999999999999999994
No 392
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.26 E-value=0.42 Score=55.72 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=47.9
Q ss_pred CCCeEEEEECCCCCchHHHHHHHHHHh----CCeeeEEeccccccc----------------ccc----chHHHHHHHHH
Q 001244 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------WFG----EGEKYVKAVFS 1037 (1116)
Q Consensus 982 ~p~~gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~seL~sk----------------~~G----esEk~Ir~lF~ 1037 (1116)
.+++.|++.|++|+|||+++..||..+ |..+.-+++...... +.. .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999998766 666776666532110 000 11233355666
Q ss_pred HHhcCCCeEEEEcccccc
Q 001244 1038 LASKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1038 ~A~k~sPsIIfIDEID~L 1055 (1116)
.+......+||||=...+
T Consensus 178 ~~~~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHTTCSEEEEECCCCC
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 665445689999986543
No 393
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.07 E-value=0.13 Score=54.70 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~ 1014 (1116)
.-|.|.|++|||||++|+.||+.+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999865
No 394
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.98 E-value=0.16 Score=62.00 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~s 1018 (1116)
.-|+|.|.+|+|||++|++|+..+ |.+++.++..
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 579999999999999999999999 9999988744
No 395
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.93 E-value=0.16 Score=54.54 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~I 1015 (1116)
..+-|.|+||+|||++|+.|++.++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4678999999999999999999999887754
No 396
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=90.87 E-value=0.51 Score=49.13 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.8
Q ss_pred eEEEEECCCCCchHHHH
Q 001244 985 KGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA 1001 (1116)
+.+++.+|+|+|||..+
T Consensus 63 ~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEEeCCCCcHHHHH
Confidence 46999999999999853
No 397
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.86 E-value=1 Score=47.14 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
...|+|.|++|+|||+|..+|....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3579999999999999999998643
No 398
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=90.84 E-value=0.44 Score=61.36 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=33.2
Q ss_pred cCcHHHHHHHHHHHHccccChhhhhcCCCCCCCeEEEEECCCCCchHHHHHHHHHH
Q 001244 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 952 gGldevk~~L~e~V~lpl~~pelf~~~~l~~p~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
+|.+...+.|.+.+.. . ...+-|.|+|+.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~----------~---d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE----------L---RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH----------C---CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc----------c---CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 7788888888877641 0 11356889999999999999999864
No 399
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.65 E-value=0.5 Score=52.07 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=45.5
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh---CCeeeEEecccccc-------c--------cc----c-chHHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K--------WF----G-EGEKYVKAVFSLA 1039 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is~seL~s-------k--------~~----G-esEk~Ir~lF~~A 1039 (1116)
+...+.+.|++|+|||++++.+|..+ +..+.-+++..... . .+ + ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678889999999999999999876 55555444321100 0 00 0 1112234556666
Q ss_pred hcCCCeEEEEcccccc
Q 001244 1040 SKIAPSVVFVDEVDSM 1055 (1116)
Q Consensus 1040 ~k~sPsIIfIDEID~L 1055 (1116)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5456789999997543
No 400
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.46 E-value=0.14 Score=51.93 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
-+.|.||+|+|||+|++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999765
No 401
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.42 E-value=0.14 Score=52.72 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=21.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+.+.|.||+|+|||+|++.|+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999764
No 402
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.38 E-value=0.07 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHhC
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
-|.|.|++|+|||++++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 403
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=90.30 E-value=0.77 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=18.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+++|+.+|+|+|||..+-..+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 469999999999998766555443
No 404
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.26 E-value=0.3 Score=52.04 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+...|+|.|.+|+|||+|+.+|...-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987543
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.10 E-value=0.29 Score=51.84 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=26.5
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC--CeeeEE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINI 1015 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg--~pfI~I 1015 (1116)
..-|.|.|++|+|||++++.|+..++ ..++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 35788999999999999999999986 455543
No 406
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=89.98 E-value=0.39 Score=53.08 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.5
Q ss_pred eEEEEECCCCCchHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAV 1004 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAI 1004 (1116)
+++|+.+|+|+|||..+-..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 57999999999999865433
No 407
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.85 E-value=0.62 Score=48.19 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.0
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
+.+++.+|+|+|||..+.
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999997543
No 408
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.72 E-value=1.7 Score=42.33 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..|+|.|++|+|||+|+.++...-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 579999999999999999998643
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.61 E-value=0.3 Score=55.39 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=44.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC--CeeeEEec-ccccc----c---ccc-c-------hHHHHHHHHHHHhcCCCeE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISM-SSITS----K---WFG-E-------GEKYVKAVFSLASKIAPSV 1046 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg--~pfI~Is~-seL~s----k---~~G-e-------sEk~Ir~lF~~A~k~sPsI 1046 (1116)
..++|.||+|+|||+|+++|+.... .-.+.+.. .++.. . ++- . ....++..+..+....|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998773 23344432 11110 0 111 0 1113456666777778999
Q ss_pred EEEcccc
Q 001244 1047 VFVDEVD 1053 (1116)
Q Consensus 1047 IfIDEID 1053 (1116)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999985
No 410
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.48 E-value=0.21 Score=53.02 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~p 1011 (1116)
.-+-|.||+|+|||+|++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 457899999999999999999988754
No 411
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.43 E-value=0.16 Score=56.03 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=24.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC---CeeeEEeccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 1019 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg---~pfI~Is~se 1019 (1116)
.-|.|.||+|+|||++|+.++..++ ..+..+++..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 3588999999999999999999875 4444455443
No 412
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=89.30 E-value=1 Score=55.29 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=15.7
Q ss_pred eEEEEECCCCCchHHHH
Q 001244 985 KGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA 1001 (1116)
.++|+.||+|+|||..+
T Consensus 40 ~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 40 KNALISIPTASGKTLIA 56 (720)
T ss_dssp CEEEEECCGGGCHHHHH
T ss_pred CcEEEEcCCccHHHHHH
Confidence 68999999999999877
No 413
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.28 E-value=0.26 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+..-+.|.||.|+|||+|+++|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33568899999999999999999987
No 414
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.26 E-value=1.6 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
...|+|.|++|+|||+|..++...-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998643
No 415
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.10 E-value=1.5 Score=54.97 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
+..-++|.||.|+|||++.+.|+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3357899999999999999999865
No 416
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.05 E-value=0.24 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=21.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.||+|+|||+|+++|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999876
No 417
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.03 E-value=0.72 Score=53.38 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=25.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh-----CCeeeEE
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINI 1015 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el-----g~pfI~I 1015 (1116)
...++|+||+|+|||+|++.||+.. ++.++.+
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 3579999999999999999998865 4555544
No 418
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=88.91 E-value=0.54 Score=49.30 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.1
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
+.+|+.+|+|+|||..+.
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 469999999999997643
No 419
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.77 E-value=0.23 Score=51.45 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCeeeEEeccc
Q 001244 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1116)
Q Consensus 987 ILL~GPPGTGKT~LArAIA~elg~pfI~Is~se 1019 (1116)
+|++|++|+|||++|..+|.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888888754
No 420
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.76 E-value=0.14 Score=54.98 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=26.1
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh-CCeee
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA-GANFI 1013 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el-g~pfI 1013 (1116)
.+.-|.|.|++|+|||++++.|++.+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34678999999999999999999998 55444
No 421
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.75 E-value=1.4 Score=45.75 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.8
Q ss_pred eEEEEECCCCCchHHHH
Q 001244 985 KGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA 1001 (1116)
+.+++.+|+|+|||..+
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 47999999999999863
No 422
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.73 E-value=0.66 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|+|.|++|+|||+|..+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 423
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.60 E-value=1.9 Score=41.02 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..|++.|++|+|||+|..++...-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999998653
No 424
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.59 E-value=2.2 Score=40.87 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.|++.|++|+|||+|..++...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 425
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.49 E-value=1.6 Score=46.44 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=24.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is 1016 (1116)
.-.+++|+.|+|||+.+..+|..+ |..++-+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 345689999999999888887766 66555554
No 426
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.46 E-value=0.92 Score=50.93 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.0
Q ss_pred EEEEECCCCCchHHHHHHHHHHh----CCeeeEEec
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el----g~pfI~Is~ 1017 (1116)
++||.+|+|+|||..+-+++... +..++.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 69999999999999887776654 555555443
No 427
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=88.45 E-value=0.96 Score=50.38 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCcccccCcHHHHHHHHHHHH-ccccCh-hhhhcCCCCCCCeEEEEECCCCCchHHHH
Q 001244 946 VTFDDIGALENVKDTLKELVM-LPLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 946 vtfddIgGldevk~~L~e~V~-lpl~~p-elf~~~~l~~p~~gILL~GPPGTGKT~LA 1001 (1116)
.+|++++-.....+.|.+.-. .|..+. +.+... .....+.+|+.+|+|+|||..+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~-~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLM-LAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH-HSSSCCCEEEECCTTSCHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hcCCCCeEEEECCCCchHHHHH
Confidence 467777766666666654210 000000 001000 0112257999999999999865
No 428
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.45 E-value=0.98 Score=50.83 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=25.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEE
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINI 1015 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~I 1015 (1116)
..|.|.|+||+|||+|+.+++..+ |..+..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 579999999999999999999876 4444433
No 429
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.42 E-value=0.25 Score=51.66 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.||+|+|||+|++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999876
No 430
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.35 E-value=2.3 Score=42.39 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
...|+|.|++|+|||+|..++....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3579999999999999999998653
No 431
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.22 E-value=0.35 Score=50.08 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCCeee
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~pfI 1013 (1116)
..++||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 469999999999999999999884 44444
No 432
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.14 E-value=0.087 Score=51.39 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecc
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~ 528 (1116)
....|||+||+| +++++||||++++.+ +++.+|..
T Consensus 26 ~~~~vll~G~~G--tGKt~lA~~i~~~~~-~~~~~~~~ 60 (143)
T 3co5_A 26 RTSPVFLTGEAG--SPFETVARYFHKNGT-PWVSPARV 60 (143)
T ss_dssp CSSCEEEEEETT--CCHHHHHGGGCCTTS-CEECCSST
T ss_pred CCCcEEEECCCC--ccHHHHHHHHHHhCC-CeEEechh
Confidence 356799999999 999999999999988 77776654
No 433
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.14 E-value=0.68 Score=49.77 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 434
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.03 E-value=1.9 Score=41.89 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
...|++.|++|+|||+|+.++....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999998653
No 435
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.01 E-value=0.25 Score=54.49 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
+.-|.|.|++|+|||+||+.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35688999999999999999999884
No 436
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.96 E-value=0.84 Score=51.58 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=16.4
Q ss_pred eEEEEECCCCCchHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVA 1005 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA 1005 (1116)
+.+|+.+|+|+|||..+-..+
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHH
Confidence 369999999999998444443
No 437
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=87.95 E-value=0.76 Score=54.88 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.++||.+|+|+|||.++-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 468999999999999887777654
No 438
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.92 E-value=0.35 Score=50.95 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-CCee
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-GANF 1012 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-g~pf 1012 (1116)
.-|.|.|++|+|||++++.|++.+ +..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 568999999999999999999998 5433
No 439
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.84 E-value=1.6 Score=42.48 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|++.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 440
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=87.78 E-value=1.4 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
.-++|.||.|+|||++.+.|+..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46889999999999999999864
No 441
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.78 E-value=0.36 Score=58.25 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=30.8
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC----CeeeEEecccc
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSSI 1020 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg----~pfI~Is~seL 1020 (1116)
..|+|.|++|+|||++|++|+..++ .+++.++...+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 5789999999999999999999985 77888875543
No 442
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.77 E-value=0.37 Score=55.61 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.1
Q ss_pred EEEEECCCCCchHHHHHHHHHHhCCeeeEEecc
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg~pfI~Is~s 1018 (1116)
.+||.+|+|+|||.++-+++...+..++.+-..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888887766665544
No 443
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.67 E-value=0.46 Score=50.00 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh---CCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el---g~pfI~Is 1016 (1116)
.-|.|.|++|+|||++++.|++.+ |++++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 467899999999999999999988 56665543
No 444
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=87.66 E-value=2.2 Score=45.77 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEECCCCCchHHHHHHHHHH
Q 001244 986 GILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~e 1007 (1116)
.|+|.|.||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999765
No 445
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.58 E-value=0.34 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
..-+.|.||+|+|||+|.++|+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35688999999999999999998764
No 446
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=87.47 E-value=1 Score=50.53 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHc-cccCh-hhhhcCCCCCCCeEEEEECCCCCchHHHHHHHH
Q 001244 945 GVTFDDIGALENVKDTLKELVML-PLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005 (1116)
Q Consensus 945 ~vtfddIgGldevk~~L~e~V~l-pl~~p-elf~~~~l~~p~~gILL~GPPGTGKT~LArAIA 1005 (1116)
..+|++++-.+...+.|...-.. +..+. +.+... . ..+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i--~-~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQI--I-KGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHH--H-TTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH--h-CCCCEEEECCCCCCchHHHHHHH
Confidence 34677777666666666542110 00000 001000 0 11469999999999997554433
No 447
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.46 E-value=1.1 Score=44.12 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|+|.|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999865
No 448
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.44 E-value=1.2 Score=43.96 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.0
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|+|.|++|+|||+|..+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 449
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.26 E-value=0.57 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.|++|+|||+|+..|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999876
No 450
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.24 E-value=1.2 Score=46.62 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.8
Q ss_pred eEEEEECCCCCchHHHH
Q 001244 985 KGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA 1001 (1116)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCEEEEECTTSCHHHHH
T ss_pred CCEEEECCCcCHHHHHH
Confidence 46999999999999854
No 451
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.21 E-value=0.35 Score=53.88 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHhCCee
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~elg~pf 1012 (1116)
+...+.|+||+|+|||+|++.|+..+...+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 446789999999999999999999874333
No 452
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.12 E-value=0.24 Score=57.99 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhCC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg~ 1010 (1116)
...|+|.|.||+|||++++.++..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 357999999999999999999998743
No 453
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.08 E-value=0.7 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
++.-++|.||+|+|||++++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44678999999999999999999876
No 454
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.02 E-value=1.3 Score=43.96 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHH
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
...|+|.|++|+|||+|..++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999998864
No 455
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=86.96 E-value=0.59 Score=54.03 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.9
Q ss_pred eEEEEECCCCCchHHHH-HHHH
Q 001244 985 KGILLFGPPGTGKTMLA-KAVA 1005 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA-rAIA 1005 (1116)
+.+|+.||+|+|||..+ .++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999865 4444
No 456
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=86.94 E-value=1.9 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..|+|.|.+|+|||+|..++...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998654
No 457
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.89 E-value=0.72 Score=49.36 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.1
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
+.+|+.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 468999999999998543
No 458
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.84 E-value=0.24 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.5
Q ss_pred eEEEEECCCCCchHHHHHHHH-HHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVA-TEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA-~el 1008 (1116)
.-+.|.||+|+|||+|++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468899999999999999999 654
No 459
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.80 E-value=1.3 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..-+.|.||||+|||+|.++|+..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999999999999999765
No 460
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.74 E-value=0.39 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.6
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
.-+.|.||+|+|||+|++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999999875
No 461
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.63 E-value=1.2 Score=47.35 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.2
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 479999999999998543
No 462
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=86.60 E-value=1.1 Score=46.71 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.7
Q ss_pred eEEEEECCCCCchHHHH
Q 001244 985 KGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA 1001 (1116)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999853
No 463
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=86.54 E-value=3.1 Score=41.19 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCchHHHHHHHHHH
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
...|+|.|++|+|||+|..++...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999854
No 464
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.45 E-value=0.37 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.6
Q ss_pred EEEEECCCCCchHHHHHHHHHHhC
Q 001244 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
-.+|+||.|+|||+|+.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998774
No 465
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=86.42 E-value=1.5 Score=53.55 Aligned_cols=18 Identities=44% Similarity=0.853 Sum_probs=16.2
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
.++|+.||+|+|||+.+.
T Consensus 47 ~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHH
Confidence 689999999999999774
No 466
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=86.31 E-value=3.6 Score=40.91 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-.|+|.|++|+|||+|+.++....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3579999999999999999998765
No 467
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.25 E-value=1.1 Score=43.78 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..++|.|++|+|||+|..+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 468
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.08 E-value=4.7 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.3
Q ss_pred eEEEEECCCCCchHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
+.+|+.+|+|+|||..+-..+.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999986644443
No 469
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=85.97 E-value=0.65 Score=54.41 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..+-.++.|+||||||++...++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3456789999999999999887753
No 470
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.91 E-value=0.48 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..-+.|.||+|+|||++++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4578899999999999999999876
No 471
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.80 E-value=0.51 Score=52.58 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+..-+.|.||+|+|||+|++.|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34567899999999999999999877
No 472
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.74 E-value=1.1 Score=50.10 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
+.+++.+|+|+|||..+-
T Consensus 78 ~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCEEECCCSCSSSHHHHH
T ss_pred CCEEEECCCCCcccHHHH
Confidence 469999999999998643
No 473
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=85.73 E-value=0.38 Score=58.38 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.9
Q ss_pred EEEEECCCCCchHHHHHHHHHHh
Q 001244 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.+|+.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999877766554
No 474
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.34 E-value=0.4 Score=53.09 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhcC----CeEEEEecc
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHFS----ARLLIVDSL 528 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f~----a~LL~lDs~ 528 (1116)
.+.|||+||+| .+++.||+|||+++. .+.+.+...
T Consensus 152 ~~~lll~G~~G--tGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMG--IGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCC--CCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 57899999999 999999999999765 666666554
No 475
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=85.32 E-value=3 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.7
Q ss_pred eEEEEECCCCCchHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
.-++|.||.|+|||++.+.|+-
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5789999999999999999853
No 476
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.30 E-value=0.7 Score=51.83 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHhC
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~elg 1009 (1116)
+.-+.|.||+|+|||++++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35678999999999999999999875
No 477
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.26 E-value=0.5 Score=49.99 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=28.2
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCCeeeEEec
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~pfI~Is~ 1017 (1116)
-.|-|+|..|||||++++.++. +|++++..|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 3688999999999999999998 9999887653
No 478
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=85.21 E-value=0.83 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhc
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f 518 (1116)
.+.|+|+||+| .++++|+|++|+.+
T Consensus 38 g~~~~l~G~~G--~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPG--VGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSS--SSHHHHHHHHHHHH
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHH
Confidence 57899999999 89999999999987
No 479
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.13 E-value=0.63 Score=49.60 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh-------CCeeeEEe
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA-------GANFINIS 1016 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el-------g~pfI~Is 1016 (1116)
.-|.|.|++|+|||++++.|++.+ |++++.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 468899999999999999999887 55555443
No 480
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.12 E-value=0.52 Score=56.15 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHHhCC
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~elg~ 1010 (1116)
..|+|.|.+|+|||++|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999975
No 481
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.06 E-value=0.56 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|++.|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999865
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.91 E-value=0.46 Score=53.44 Aligned_cols=41 Identities=39% Similarity=0.549 Sum_probs=36.7
Q ss_pred CCCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEecccCCCC
Q 001244 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPGG 533 (1116)
Q Consensus 491 ~~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs~~l~g~ 533 (1116)
..+.|+|+||+| .++.+|+++||+++++.++-+|+..+|-+
T Consensus 4 m~~~i~i~GptG--sGKTtla~~La~~l~~~iis~Ds~qvy~~ 44 (323)
T 3crm_A 4 LPPAIFLMGPTA--AGKTDLAMALADALPCELISVDSALIYRG 44 (323)
T ss_dssp CCEEEEEECCTT--SCHHHHHHHHHHHSCEEEEEECTTTTBTT
T ss_pred CCcEEEEECCCC--CCHHHHHHHHHHHcCCcEEeccchhhhcC
Confidence 345799999999 89999999999999999999999887753
No 483
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.83 E-value=0.58 Score=46.30 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
+.-|+|+||+| .++.+++|+||+.++.+.+.+|.
T Consensus 3 ~~~i~l~G~~G--sGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSS--AGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTT--SSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCC--CCHHHHHHHHHHhcCCCeEEecc
Confidence 35699999999 89999999999999998887665
No 484
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=84.72 E-value=1.8 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.3
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|.|.|++|+|||+|..+++..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 35889999999999999999854
No 485
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.42 E-value=0.43 Score=47.66 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCceeeeCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001244 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1116)
Q Consensus 492 ~~~ILLsGp~gsE~Yqe~LaKALA~~f~a~LL~lDs 527 (1116)
.+.|+|.||+| .++.+++|+||+.++.+++-.|.
T Consensus 5 ~~~i~l~G~~G--sGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMG--AGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTT--SSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHhCCCEEEChH
Confidence 56899999999 89999999999999998876554
No 486
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=84.19 E-value=5.1 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
...++|.|++|+|||+|..+++...
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998643
No 487
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=84.18 E-value=3.1 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=18.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+.+|+.+|+|+|||..+-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 369999999999998766555443
No 488
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.18 E-value=0.45 Score=49.88 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.1
Q ss_pred EEEEECCCCCchHHHHHHHHHH
Q 001244 986 GILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 986 gILL~GPPGTGKT~LArAIA~e 1007 (1116)
-+.|.||+|+|||+|++.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999975
No 489
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.17 E-value=0.59 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.|++|+|||+|+..|+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999875
No 490
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=84.12 E-value=2.2 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.7
Q ss_pred eEEEEECCCCCchHHHHH-HHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK-AVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr-AIA~e 1007 (1116)
+.+|+.+|+|+|||..+. ++...
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHHHH
Confidence 579999999999998643 34444
No 491
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=84.11 E-value=4.6 Score=40.87 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
..|+|.|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999854
No 492
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.98 E-value=0.52 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHHh
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
+..-+.|.||+|+|||+|++.|+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33568899999999999999999765
No 493
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=83.97 E-value=1.6 Score=46.96 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEEECCCCCchHHHHHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~ 1006 (1116)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4699999999999999999976
No 494
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.96 E-value=0.52 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCchHHHHHHHHHHh
Q 001244 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 984 ~~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..-+.|.||+|+|||+|.+.|+...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3568899999999999999999655
No 495
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=83.94 E-value=1.1 Score=49.52 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.8
Q ss_pred eEEEEECCCCCchHHHH
Q 001244 985 KGILLFGPPGTGKTMLA 1001 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LA 1001 (1116)
+.+|+.+|+|+|||..+
T Consensus 59 ~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCEEECCCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 46999999999999864
No 496
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=83.85 E-value=0.81 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Q 001244 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1116)
Q Consensus 983 p~~gILL~GPPGTGKT~LArAIA~e 1007 (1116)
....|++.|++|+|||+|..++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999764
No 497
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=83.77 E-value=5 Score=40.53 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..|+|.|++|+|||+|..++....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998754
No 498
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=83.75 E-value=2.7 Score=43.11 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.1
Q ss_pred eEEEEECCCCCchHHHHH
Q 001244 985 KGILLFGPPGTGKTMLAK 1002 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LAr 1002 (1116)
+.+++.+|+|+|||..+.
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998643
No 499
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=83.61 E-value=0.78 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=22.1
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
..++|.|++|+|||+|+..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999886
No 500
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.60 E-value=0.62 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.7
Q ss_pred eEEEEECCCCCchHHHHHHHHHHh
Q 001244 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1116)
Q Consensus 985 ~gILL~GPPGTGKT~LArAIA~el 1008 (1116)
.-+.|.||+|+|||+|.+.|+...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999765
Done!