BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001245
(1115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 176/359 (49%), Gaps = 53/359 (14%)
Query: 545 LYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAA 604
+YT ++N + AGT+NV G++ ++ L WL + + VG QE+++ +
Sbjct: 1 MYTYIQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------S 50
Query: 605 KETVGLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVA 664
KE + W + + L + + +V +L G+++ ++V++ Y+ +V+
Sbjct: 51 KEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAE 110
Query: 665 AVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRP 724
V G +GNKG V +R + ++ +C VN H AAH+E RRN D+ + M FC+P
Sbjct: 111 TVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQP 170
Query: 725 SNLCXXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEAR 784
S PL+ +S D++++LGD NYR++ + ++ +
Sbjct: 171 DP-----------------SLPPLT---------ISNHDVILWLGDLNYRIEELDVEKVK 204
Query: 785 DFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKR 844
I ++ F L DQL+ ++ A VF+G E ++ F PTYK++ G +D+ EK R
Sbjct: 205 KLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD---TGSDDWDTSEKCR 261
Query: 845 VPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARV 903
PAWCDRIL++ + L Y++ M + SDHKPV +F + + V
Sbjct: 262 APAWCDRILWKGKN--------------ITQLSYQSHMALKTSDHKPVSSVFDIGVRVV 306
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 176 bits (445), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 175/357 (49%), Gaps = 53/357 (14%)
Query: 549 MENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETV 608
++N + AGT+NV G++ ++ L WL + + VG QE+++ +KE
Sbjct: 2 IQNFRFFAGTYNVN-GQSPKECLRLWLSNGIQAPDVYCVGFQELDL---------SKEAF 51
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
+ W + + L + + +V +L G+++ ++V++ Y+ +V+ V
Sbjct: 52 FFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGT 111
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G +GNKG V +R + ++ +C VN H AAH+E RRN D+ + M FC+P
Sbjct: 112 GIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDP-- 169
Query: 729 XXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
S PL+ +S D++++LGD NYR++ + ++ + I
Sbjct: 170 ---------------SLPPLT---------ISNHDVILWLGDLNYRIEELDVEKVKKLIE 205
Query: 789 QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAW 848
++ F L DQL+ ++ A VF+G E ++ F PTYK++ G +D+ EK R PAW
Sbjct: 206 EKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYD---TGSDDWDTSEKCRAPAW 262
Query: 849 CDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVDE 905
CDRIL++ + L Y++ M + SDHKPV +F + + V++
Sbjct: 263 CDRILWKGKN--------------ITQLSYQSHMALKTSDHKPVSSVFDIGVRVVND 305
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 173/405 (42%), Gaps = 80/405 (19%)
Query: 530 PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVG-IVVVG 588
P+ + EL +E ++ +N+KI ++N+ G ++ L +WL + + I VVG
Sbjct: 3 PIHEYVNHELRKRENEFSEHKNVKIFVASYNLN-GCSATTKLENWLFPENTPLADIYVVG 61
Query: 589 LQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGL 644
QE+ + + V A W + ++L+ G + ++ S QL G
Sbjct: 62 FQEI--------VQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Query: 645 LIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704
+ ++ +++ + +V+ G G GNKGAV +R D +CF+ H AA
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 705 VNRRNADFDHVYRTMTFCRPSNLCXXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADM 764
+ R DH YRT+ SGL + D
Sbjct: 174 YDER----DHDYRTIA----------------------------SGLRFRRGRSIFNHDY 201
Query: 765 VIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPT 824
V++ GDFNYR+ +TY+E I+Q +L E DQL +M G VF E I FPPT
Sbjct: 202 VVWFGDFNYRI-SLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPT 260
Query: 825 YKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDV 884
YKF+ G YD+ +K RVPAW DRILY R +L P+
Sbjct: 261 YKFD---IGTDIYDTSDKHRVPAWTDRILY---RGELVPHSYQSVPLYY----------- 303
Query: 885 TDSDHKPVRCIFSVDIARVDESVRRQEFGDIMTSNEKVKIILEDL 929
SDH+P+ + +I +VD EK KI+ E+L
Sbjct: 304 --SDHRPIYATYEANIVKVDR--------------EKKKILFEEL 332
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 151/363 (41%), Gaps = 69/363 (19%)
Query: 552 LKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLE 611
+ + GTWN+G ++ + SW S + L EV + + G +
Sbjct: 8 ISVFIGTWNMGSVPPPKN-VTSWFTSKG-----LGKTLDEVT-----VTIPHDIYVFGTQ 56
Query: 612 GSAVG-HWWLDMIGKILDDGST--FERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
++VG WLD++ L + + + + + L + +AV V+ ++ + V ++V
Sbjct: 57 ENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKT 116
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
G +GNKGAVG+ FVNCH + E RRN ++ + R ++
Sbjct: 117 GIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSL------- 169
Query: 729 XXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADM------VIFLGDFNYRLDGITYDE 782
G +L+ D+ + + GD NYRLD + E
Sbjct: 170 --------------------------GDRQLNAFDISLRFTHLFWFGDLNYRLD-MDIQE 202
Query: 783 ARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEK----HLAGLAGYD 838
++IS++ F+ L DQL E E VF E +I FPPTY++E+ A
Sbjct: 203 ILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKP 262
Query: 839 SGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSV 898
+G + VP+WCDRIL++ E + C Y D+ SDH PV F V
Sbjct: 263 TGVRTNVPSWCDRILWKS-----YPETHIICN------SYGCTDDIVTSDHSPVFGTFEV 311
Query: 899 DIA 901
+
Sbjct: 312 GVT 314
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 147/355 (41%), Gaps = 62/355 (17%)
Query: 551 NLKILAGTWNVGQGRASQDALISWLGSAASDVG--IVVVGLQEVEMGAGFLAMSAAKETV 608
N+ + TWN+ + +L +L A +D + V+G+QE
Sbjct: 25 NVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQE----------------- 67
Query: 609 GLEGSAVGHWWLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPC 668
G + W + + L G + + S L +++++R++L + +V+ + V
Sbjct: 68 ---GCSDRREWETRLQETL--GPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTT 122
Query: 669 GFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLC 728
I KGA+G+ + F+ HF + V R D+ + + P N+
Sbjct: 123 RIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVL--PRNVP 180
Query: 729 XXXXXXXXXVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFIS 788
TNP + E V + GDFN+RL G
Sbjct: 181 ---------------DTNPYRSSAADVTTRFDE---VFWFGDFNFRLSGGRTVVDALLCQ 222
Query: 789 QRCFD--WLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVP 846
D L + DQL EM G++F+G +E DI F P+YKF+ G YDS K+R P
Sbjct: 223 GLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFD---IGKDTYDSTSKQRTP 279
Query: 847 AWCDRILYRD-SRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDI 900
++ DR+LYR + D+ CPV+ Y +C + SDH+PV +F V +
Sbjct: 280 SYTDRVLYRSRHKGDI-------CPVS-----YSSCPGIKTSDHRPVYGLFRVKV 322
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 19/139 (13%)
Query: 762 ADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKF 821
+D + ++GD N R++ A+ + Q D L DQL+ E +F G E + F
Sbjct: 163 SDFLFWIGDLNVRVE-TNATHAKSLVDQNNIDGLMAFDQLKKAKEQ-KLFDGWTEPQVTF 220
Query: 822 PPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEAC 881
PTYKF+ + D + P+W DR LY+ L Y +
Sbjct: 221 KPTYKFKPNT------DEYDLSATPSWTDRALYKSGTGKTIQP-----------LSYNSL 263
Query: 882 MDVTDSDHKPVRCIFSVDI 900
+ ++H+PV F V +
Sbjct: 264 TNYKQTEHRPVLAKFRVTL 282
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI- 362
Query: 460 FAVQCLCTFG 469
FA L G
Sbjct: 363 FAHPTLSVKG 372
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQ 363
Query: 460 FA 461
A
Sbjct: 364 AA 365
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYLP 459
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI- 362
Query: 460 FAVQCLCTFG 469
FA L G
Sbjct: 363 FAHPTLSVKG 372
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG--GANGLLLQWDPN-GNRLQDFQYL 458
ADAV + A GGF +N R L S+ G I T GA G L N G L+D QY+
Sbjct: 306 ADAV--ILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYI 362
>pdb|3L92|A Chain A, Phosphopantetheine Adenylyltransferase From Yersinia
Pestis Complexed With Coenzyme A.
pdb|3L93|A Chain A, Phosphopantetheine Adenylyltransferase From Yersinia
Pestis
Length = 162
Score = 30.4 bits (67), Expect = 5.4, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 59 RLDYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKP-PVRAAL 111
+L M L KL S +EK F SSS + E GGDI F P PV AL
Sbjct: 104 QLANMNRHLMPKLESVFLIPSEKWSFISSSLVKEVARHGGDITPFLPKPVTKAL 157
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|2O6I|B Chain B, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|3IRH|A Chain A, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|B Chain B, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|C Chain C, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|D Chain D, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
Length = 480
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 61 DYMMEFLERKLSSSATTTNEKKRFASSSSLPEYIGKGGDIPMFKPPVRAA 110
D FL RK SAT TNEK+ A+ + L E I K G P + + ++
Sbjct: 342 DLAKRFLMRKPLKSATFTNEKESAATIAYLRELIEKVGFNPKYYTAINSS 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,745,947
Number of Sequences: 62578
Number of extensions: 1368618
Number of successful extensions: 2801
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2755
Number of HSP's gapped (non-prelim): 42
length of query: 1115
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1006
effective length of database: 8,152,335
effective search space: 8201249010
effective search space used: 8201249010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)