Query 001245
Match_columns 1115
No_of_seqs 537 out of 2604
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 19:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0566 Inositol-1,4,5-triphos 100.0 1.2E-87 2.6E-92 790.6 25.6 339 516-919 506-852 (1080)
2 PLN03191 Type I inositol-1,4,5 100.0 4.8E-78 1E-82 699.3 28.9 249 619-912 350-605 (621)
3 smart00128 IPPc Inositol polyp 100.0 2.3E-74 4.9E-79 651.2 27.3 300 551-904 2-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 1.9E-66 4.2E-71 576.7 18.7 331 528-917 6-345 (460)
5 KOG0271 Notchless-like WD40 re 100.0 2.2E-41 4.7E-46 367.0 27.5 336 131-524 114-479 (480)
6 KOG0271 Notchless-like WD40 re 100.0 2.9E-37 6.3E-42 335.0 27.6 296 188-565 113-465 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-35 8.3E-40 322.8 21.1 266 191-524 175-458 (459)
8 KOG0281 Beta-TrCP (transducin 100.0 3.2E-33 6.9E-38 299.9 16.3 254 149-530 215-481 (499)
9 KOG0263 Transcription initiati 100.0 4.7E-32 1E-36 318.3 23.6 242 191-528 378-651 (707)
10 KOG0295 WD40 repeat-containing 100.0 3.4E-31 7.5E-36 287.2 25.8 269 148-524 127-404 (406)
11 KOG0319 WD40-repeat-containing 100.0 8.9E-31 1.9E-35 304.2 29.5 364 137-527 110-620 (775)
12 KOG0281 Beta-TrCP (transducin 100.0 2.8E-32 6E-37 292.6 11.8 230 191-527 197-429 (499)
13 KOG0286 G-protein beta subunit 100.0 8.7E-30 1.9E-34 269.8 29.0 259 148-524 74-343 (343)
14 KOG0319 WD40-repeat-containing 100.0 6.6E-30 1.4E-34 296.9 30.6 109 137-272 69-181 (775)
15 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-30 4.7E-35 285.4 20.5 256 142-485 186-458 (459)
16 KOG0306 WD40-repeat-containing 100.0 1.5E-28 3.3E-33 285.2 30.9 361 138-526 71-664 (888)
17 KOG0315 G-protein beta subunit 100.0 2.1E-28 4.5E-33 254.3 26.2 257 148-527 17-289 (311)
18 PTZ00312 inositol-1,4,5-tripho 100.0 2.4E-30 5.2E-35 274.4 11.6 187 673-896 64-356 (356)
19 KOG0279 G protein beta subunit 100.0 1.1E-27 2.3E-32 252.9 30.3 275 188-526 13-313 (315)
20 KOG0285 Pleiotropic regulator 100.0 1.4E-28 3.1E-33 265.6 22.3 235 187-527 148-390 (460)
21 KOG0263 Transcription initiati 100.0 2.9E-28 6.4E-33 286.5 24.9 241 142-487 389-649 (707)
22 KOG0274 Cdc4 and related F-box 100.0 5.6E-28 1.2E-32 289.8 26.6 268 141-534 217-490 (537)
23 KOG0266 WD40 repeat-containing 100.0 3.4E-27 7.4E-32 282.1 32.2 263 142-525 170-453 (456)
24 KOG0295 WD40 repeat-containing 100.0 1.8E-28 4E-33 266.1 19.2 233 191-527 108-365 (406)
25 KOG0318 WD40 repeat stress pro 100.0 2.8E-26 6.2E-31 258.2 35.8 352 129-526 187-602 (603)
26 KOG0273 Beta-transducin family 100.0 4.8E-27 1E-31 261.8 26.4 292 145-565 193-507 (524)
27 KOG0285 Pleiotropic regulator 100.0 1.7E-26 3.7E-31 249.7 25.4 272 130-526 149-439 (460)
28 KOG0279 G protein beta subunit 99.9 2.2E-26 4.7E-31 243.0 25.1 233 129-487 60-313 (315)
29 KOG0266 WD40 repeat-containing 99.9 2.3E-26 4.9E-31 275.0 28.1 236 191-528 159-411 (456)
30 KOG0313 Microtubule binding pr 99.9 1.8E-26 3.9E-31 251.8 24.3 297 125-525 98-417 (423)
31 KOG0265 U5 snRNP-specific prot 99.9 3.7E-26 8.1E-31 243.3 24.3 266 188-522 45-334 (338)
32 KOG0291 WD40-repeat-containing 99.9 1.7E-25 3.7E-30 260.1 30.5 239 184-527 344-613 (893)
33 KOG0313 Microtubule binding pr 99.9 1.9E-26 4.1E-31 251.6 20.9 283 188-563 103-401 (423)
34 KOG0318 WD40 repeat stress pro 99.9 3.7E-24 8E-29 241.3 38.6 332 191-530 190-564 (603)
35 cd00200 WD40 WD40 domain, foun 99.9 1.3E-24 2.9E-29 234.8 33.5 268 188-524 7-289 (289)
36 KOG0274 Cdc4 and related F-box 99.9 5.3E-26 1.2E-30 272.8 24.4 231 191-530 208-445 (537)
37 KOG0291 WD40-repeat-containing 99.9 1.1E-23 2.4E-28 245.1 38.7 359 138-527 102-509 (893)
38 PLN00181 protein SPA1-RELATED; 99.9 2.8E-24 6.2E-29 274.0 37.4 273 191-525 483-792 (793)
39 KOG0645 WD40 repeat protein [G 99.9 2.7E-24 5.8E-29 226.4 30.1 274 137-526 19-311 (312)
40 KOG0308 Conserved WD40 repeat- 99.9 5.7E-26 1.2E-30 261.0 16.9 247 196-530 29-289 (735)
41 KOG0286 G-protein beta subunit 99.9 1.9E-24 4.2E-29 229.4 27.0 241 188-527 53-304 (343)
42 KOG0284 Polyadenylation factor 99.9 7.4E-26 1.6E-30 248.7 16.2 264 142-530 108-384 (464)
43 KOG0293 WD40 repeat-containing 99.9 9.9E-25 2.1E-29 239.6 22.6 272 191-527 224-514 (519)
44 KOG0315 G-protein beta subunit 99.9 1.2E-23 2.6E-28 219.0 27.9 265 126-506 24-308 (311)
45 KOG0301 Phospholipase A2-activ 99.9 6.1E-24 1.3E-28 246.1 25.3 273 131-531 13-293 (745)
46 KOG0296 Angio-associated migra 99.9 3.6E-23 7.9E-28 225.3 29.5 315 134-526 66-398 (399)
47 KOG0276 Vesicle coat complex C 99.9 5.3E-24 1.1E-28 243.3 23.2 250 149-522 33-295 (794)
48 KOG0282 mRNA splicing factor [ 99.9 3.9E-25 8.4E-30 247.8 13.5 269 187-524 211-503 (503)
49 KOG0565 Inositol polyphosphate 99.9 1.1E-24 2.3E-29 220.8 12.0 141 632-799 2-145 (145)
50 KOG0292 Vesicle coat complex C 99.9 2.3E-23 5.1E-28 244.9 24.4 299 191-530 9-325 (1202)
51 KOG0284 Polyadenylation factor 99.9 3.4E-24 7.3E-29 235.7 15.5 235 192-530 97-341 (464)
52 KOG0300 WD40 repeat-containing 99.9 2E-23 4.4E-28 222.4 20.1 283 131-529 137-479 (481)
53 KOG0645 WD40 repeat protein [G 99.9 6.3E-22 1.4E-26 208.7 29.6 264 188-561 12-290 (312)
54 KOG0276 Vesicle coat complex C 99.9 8.4E-23 1.8E-27 233.5 24.6 234 191-527 13-258 (794)
55 PLN00181 protein SPA1-RELATED; 99.9 2.7E-21 5.8E-26 246.8 35.4 272 132-486 483-792 (793)
56 KOG0275 Conserved WD40 repeat- 99.9 5E-23 1.1E-27 219.7 15.7 269 142-524 224-507 (508)
57 KOG0316 Conserved WD40 repeat- 99.9 3.4E-22 7.4E-27 206.7 21.3 233 232-527 8-258 (307)
58 KOG0316 Conserved WD40 repeat- 99.9 7E-22 1.5E-26 204.4 23.0 263 191-524 17-297 (307)
59 PTZ00421 coronin; Provisional 99.9 6E-21 1.3E-25 228.7 34.7 225 188-509 73-314 (493)
60 cd00200 WD40 WD40 domain, foun 99.9 1.2E-20 2.5E-25 204.0 33.8 264 134-485 11-289 (289)
61 KOG0273 Beta-transducin family 99.9 2.2E-21 4.8E-26 216.9 27.4 268 142-526 246-523 (524)
62 KOG0265 U5 snRNP-specific prot 99.9 3E-21 6.4E-26 206.1 26.5 272 132-483 47-334 (338)
63 PTZ00421 coronin; Provisional 99.9 3.3E-21 7.2E-26 231.0 29.8 247 193-528 22-292 (493)
64 KOG0306 WD40-repeat-containing 99.9 3E-21 6.5E-26 225.0 28.2 280 130-487 371-664 (888)
65 KOG0292 Vesicle coat complex C 99.9 3E-21 6.4E-26 227.4 27.4 306 149-527 29-349 (1202)
66 PTZ00420 coronin; Provisional 99.9 6.3E-21 1.4E-25 230.0 30.9 228 188-509 72-317 (568)
67 KOG0308 Conserved WD40 repeat- 99.9 5.4E-22 1.2E-26 228.5 18.3 279 142-527 36-328 (735)
68 KOG0301 Phospholipase A2-activ 99.9 9.1E-22 2E-26 228.2 20.0 231 188-526 12-249 (745)
69 KOG0288 WD40 repeat protein Ti 99.9 3.6E-22 7.8E-27 220.2 15.3 249 148-523 194-458 (459)
70 KOG0275 Conserved WD40 repeat- 99.9 7.4E-22 1.6E-26 210.9 15.8 242 191-527 213-468 (508)
71 PTZ00420 coronin; Provisional 99.9 2.3E-20 4.9E-25 225.2 30.5 223 208-527 49-294 (568)
72 KOG0294 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 202.6 24.7 232 184-487 37-281 (362)
73 KOG0296 Angio-associated migra 99.9 1.2E-20 2.6E-25 205.8 24.6 272 188-528 62-358 (399)
74 KOG0278 Serine/threonine kinas 99.9 6.4E-21 1.4E-25 198.6 18.0 279 123-527 5-298 (334)
75 KOG0278 Serine/threonine kinas 99.9 3.1E-21 6.8E-26 200.9 15.2 241 124-490 41-301 (334)
76 KOG0640 mRNA cleavage stimulat 99.9 9.3E-21 2E-25 202.1 18.9 213 187-491 109-340 (430)
77 KOG0268 Sof1-like rRNA process 99.9 8.8E-21 1.9E-25 206.3 16.7 271 182-526 56-345 (433)
78 KOG0282 mRNA splicing factor [ 99.8 1.7E-20 3.7E-25 210.7 18.8 300 101-485 175-503 (503)
79 KOG0277 Peroxisomal targeting 99.8 5.5E-20 1.2E-24 192.4 20.8 265 138-524 24-307 (311)
80 KOG0283 WD40 repeat-containing 99.8 5.4E-20 1.2E-24 219.0 22.8 244 188-530 265-580 (712)
81 KOG0293 WD40 repeat-containing 99.8 1.5E-19 3.2E-24 199.2 20.5 260 142-487 235-513 (519)
82 KOG0299 U3 snoRNP-associated p 99.8 4.3E-19 9.3E-24 198.6 22.4 271 191-524 142-454 (479)
83 KOG0643 Translation initiation 99.8 1.9E-18 4.1E-23 182.1 25.7 279 184-526 4-317 (327)
84 KOG1446 Histone H3 (Lys4) meth 99.8 7.7E-18 1.7E-22 181.9 30.2 265 191-525 14-302 (311)
85 KOG0641 WD40 repeat protein [G 99.8 4.9E-18 1.1E-22 174.5 26.7 245 191-526 32-303 (350)
86 KOG0305 Anaphase promoting com 99.8 2.1E-18 4.7E-23 201.1 26.5 259 145-528 191-463 (484)
87 KOG0288 WD40 repeat protein Ti 99.8 6.4E-20 1.4E-24 202.6 12.3 259 188-563 173-443 (459)
88 KOG0310 Conserved WD40 repeat- 99.8 8.1E-19 1.8E-23 197.7 21.2 249 148-523 45-306 (487)
89 KOG1408 WD40 repeat protein [F 99.8 1.2E-17 2.7E-22 193.2 31.0 375 142-527 269-714 (1080)
90 KOG0641 WD40 repeat protein [G 99.8 3.4E-17 7.4E-22 168.4 30.2 289 133-525 33-348 (350)
91 KOG0310 Conserved WD40 repeat- 99.8 1.7E-18 3.8E-23 195.1 21.9 222 141-487 78-309 (487)
92 KOG0647 mRNA export protein (c 99.8 6.8E-18 1.5E-22 180.6 24.9 270 117-517 18-315 (347)
93 KOG0973 Histone transcription 99.8 3.6E-18 7.7E-23 207.9 24.7 304 191-595 13-360 (942)
94 KOG1407 WD40 repeat protein [F 99.8 1.7E-17 3.6E-22 174.6 24.3 251 191-510 20-284 (313)
95 KOG0277 Peroxisomal targeting 99.8 6E-18 1.3E-22 177.3 20.8 241 212-559 37-293 (311)
96 KOG0300 WD40 repeat-containing 99.8 9.4E-19 2E-23 187.0 14.0 234 188-527 146-387 (481)
97 KOG2445 Nuclear pore complex c 99.8 3.1E-17 6.7E-22 176.0 25.5 264 181-525 5-317 (361)
98 KOG1539 WD repeat protein [Gen 99.8 1.3E-16 2.8E-21 188.8 31.5 335 145-535 176-615 (910)
99 KOG1976 Inositol polyphosphate 99.8 1.2E-19 2.7E-24 193.0 5.6 183 673-899 153-389 (391)
100 KOG0289 mRNA splicing factor [ 99.8 7.2E-17 1.6E-21 179.4 26.0 269 191-525 219-505 (506)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2E-16 4.3E-21 176.1 30.1 251 148-527 8-280 (300)
102 KOG0647 mRNA export protein (c 99.8 6.3E-17 1.4E-21 173.3 23.2 257 191-565 27-307 (347)
103 KOG0973 Histone transcription 99.8 9.6E-17 2.1E-21 195.6 27.8 293 135-487 16-355 (942)
104 KOG2096 WD40 repeat protein [G 99.8 4.8E-17 1E-21 174.7 22.1 270 188-524 84-400 (420)
105 KOG0646 WD40 repeat protein [G 99.8 2.1E-17 4.6E-22 185.5 20.3 238 191-506 81-327 (476)
106 KOG0299 U3 snoRNP-associated p 99.8 5.1E-17 1.1E-21 182.1 22.1 250 235-527 136-411 (479)
107 KOG0267 Microtubule severing p 99.7 2.7E-18 5.8E-23 200.1 10.3 221 191-515 28-257 (825)
108 KOG0321 WD40 repeat-containing 99.7 5.5E-17 1.2E-21 187.2 20.7 301 148-527 71-392 (720)
109 KOG0305 Anaphase promoting com 99.7 8.3E-17 1.8E-21 187.9 22.5 214 149-487 237-461 (484)
110 KOG0640 mRNA cleavage stimulat 99.7 2.7E-17 5.9E-22 175.9 16.9 248 233-562 104-383 (430)
111 KOG0639 Transducin-like enhanc 99.7 6E-17 1.3E-21 181.9 20.4 278 129-525 416-703 (705)
112 KOG1407 WD40 repeat protein [F 99.7 9.1E-17 2E-21 169.1 20.3 238 235-531 14-266 (313)
113 KOG1036 Mitotic spindle checkp 99.7 4.5E-16 9.8E-21 167.6 25.1 99 142-271 26-125 (323)
114 KOG1446 Histone H3 (Lys4) meth 99.7 1.6E-15 3.5E-20 164.1 28.6 269 132-487 14-303 (311)
115 KOG2048 WD40 repeat protein [G 99.7 2.2E-15 4.8E-20 175.5 30.0 280 133-527 26-320 (691)
116 KOG1063 RNA polymerase II elon 99.7 3.4E-16 7.4E-21 182.2 23.2 113 415-527 521-649 (764)
117 KOG2106 Uncharacterized conser 99.7 6.3E-15 1.4E-19 166.4 31.7 350 147-525 218-625 (626)
118 KOG1332 Vesicle coat complex C 99.7 1.3E-16 2.7E-21 166.7 16.8 251 193-527 13-287 (299)
119 KOG0264 Nucleosome remodeling 99.7 2.6E-16 5.6E-21 176.8 20.4 249 191-526 124-404 (422)
120 KOG0646 WD40 repeat protein [G 99.7 9.2E-16 2E-20 172.5 24.4 263 149-527 15-308 (476)
121 KOG0283 WD40 repeat-containing 99.7 1.5E-16 3.3E-21 189.9 19.0 214 235-527 260-533 (712)
122 KOG0267 Microtubule severing p 99.7 1.1E-17 2.3E-22 195.1 8.5 239 204-565 5-252 (825)
123 KOG2096 WD40 repeat protein [G 99.7 2.6E-16 5.7E-21 169.1 17.8 102 425-526 193-308 (420)
124 KOG0294 WD40 repeat-containing 99.7 1.8E-15 4E-20 163.0 24.2 258 206-526 4-281 (362)
125 KOG0639 Transducin-like enhanc 99.7 1.6E-16 3.4E-21 178.5 16.1 237 191-526 419-663 (705)
126 KOG1036 Mitotic spindle checkp 99.7 4.3E-15 9.4E-20 160.1 26.3 251 192-515 14-293 (323)
127 KOG4283 Transcription-coupled 99.7 1.5E-15 3.2E-20 161.9 21.3 206 187-487 40-276 (397)
128 KOG0772 Uncharacterized conser 99.7 1.4E-15 3.1E-20 171.9 21.8 289 190-524 166-485 (641)
129 KOG2048 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 169.9 28.2 236 191-527 25-276 (691)
130 KOG0643 Translation initiation 99.7 3.7E-15 8.1E-20 157.4 21.9 244 142-446 22-315 (327)
131 KOG0772 Uncharacterized conser 99.7 6.7E-16 1.5E-20 174.5 16.7 216 234-528 160-396 (641)
132 KOG1408 WD40 repeat protein [F 99.7 2.2E-15 4.8E-20 174.8 21.3 224 191-487 459-713 (1080)
133 KOG0642 Cell-cycle nuclear pro 99.7 7.3E-16 1.6E-20 176.6 16.4 271 191-499 294-574 (577)
134 KOG0270 WD40 repeat-containing 99.6 4.5E-15 9.7E-20 166.1 19.5 229 202-531 191-454 (463)
135 KOG0650 WD40 repeat nucleolar 99.6 9.9E-15 2.1E-19 167.6 22.5 291 187-523 397-732 (733)
136 KOG1332 Vesicle coat complex C 99.6 6.9E-15 1.5E-19 153.8 19.3 240 142-489 23-290 (299)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.1E-13 2.4E-18 154.1 29.6 242 143-506 43-298 (300)
138 KOG0269 WD40 repeat-containing 99.6 2.2E-15 4.9E-20 177.3 14.2 221 202-523 99-337 (839)
139 KOG0302 Ribosome Assembly prot 99.6 1.1E-14 2.4E-19 159.9 18.0 113 414-527 252-379 (440)
140 KOG0264 Nucleosome remodeling 99.6 7.2E-14 1.6E-18 157.3 24.7 235 148-488 144-405 (422)
141 KOG0268 Sof1-like rRNA process 99.6 1.3E-14 2.7E-19 158.8 16.9 252 235-564 60-328 (433)
142 KOG1539 WD repeat protein [Gen 99.6 1.4E-13 3.1E-18 163.4 26.9 328 142-524 256-646 (910)
143 KOG0321 WD40 repeat-containing 99.6 2E-14 4.4E-19 166.3 18.7 243 144-487 114-391 (720)
144 KOG0649 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 144.6 22.0 245 193-526 12-274 (325)
145 KOG1274 WD40 repeat protein [G 99.6 3.7E-13 8E-18 161.6 26.4 235 188-527 11-263 (933)
146 KOG0270 WD40 repeat-containing 99.5 2.9E-13 6.4E-18 151.7 20.7 283 87-487 149-449 (463)
147 KOG0289 mRNA splicing factor [ 99.5 1E-12 2.2E-17 146.8 24.3 253 148-486 238-505 (506)
148 KOG0269 WD40 repeat-containing 99.5 5.5E-14 1.2E-18 165.8 15.1 220 143-483 100-336 (839)
149 KOG0644 Uncharacterized conser 99.5 2.4E-14 5.3E-19 169.0 11.8 272 188-527 188-469 (1113)
150 COG2319 FOG: WD40 repeat [Gene 99.5 2.2E-11 4.7E-16 137.8 34.2 273 133-528 66-361 (466)
151 KOG1273 WD40 repeat protein [G 99.5 7.7E-13 1.7E-17 142.6 20.8 270 193-528 25-324 (405)
152 KOG4283 Transcription-coupled 99.5 2.5E-12 5.4E-17 137.6 24.4 300 130-527 41-366 (397)
153 COG2319 FOG: WD40 repeat [Gene 99.5 7E-12 1.5E-16 141.8 29.6 235 191-528 65-316 (466)
154 KOG2445 Nuclear pore complex c 99.5 1.7E-12 3.6E-17 140.0 22.7 257 142-487 25-318 (361)
155 KOG0307 Vesicle coat complex C 99.5 5.1E-14 1.1E-18 172.7 12.7 241 195-529 68-330 (1049)
156 KOG1063 RNA polymerase II elon 99.5 6.2E-12 1.3E-16 147.2 27.7 306 144-524 26-389 (764)
157 KOG0642 Cell-cycle nuclear pro 99.5 2E-13 4.4E-18 156.8 14.9 128 133-274 295-430 (577)
158 KOG4328 WD40 protein [Function 99.5 3.1E-12 6.8E-17 143.9 22.4 275 188-524 184-493 (498)
159 KOG2919 Guanine nucleotide-bin 99.5 3.5E-12 7.6E-17 138.1 21.2 251 196-530 54-331 (406)
160 KOG1274 WD40 repeat protein [G 99.5 1.1E-11 2.3E-16 149.3 27.3 223 148-488 32-263 (933)
161 KOG0303 Actin-binding protein 99.5 2.2E-12 4.8E-17 142.7 19.8 137 179-348 71-211 (472)
162 KOG1538 Uncharacterized conser 99.5 1.4E-12 3E-17 150.8 18.9 262 193-527 14-294 (1081)
163 KOG4378 Nuclear protein COP1 [ 99.5 4.3E-12 9.4E-17 143.2 21.3 284 144-512 5-308 (673)
164 KOG0302 Ribosome Assembly prot 99.4 2.4E-12 5.2E-17 141.8 18.3 203 191-487 151-378 (440)
165 KOG2106 Uncharacterized conser 99.4 1.3E-10 2.9E-15 132.0 32.5 319 148-523 177-518 (626)
166 KOG0650 WD40 repeat nucleolar 99.4 3.1E-12 6.8E-17 147.3 17.9 258 234-525 393-679 (733)
167 KOG1445 Tumor-specific antigen 99.4 1.4E-11 2.9E-16 142.1 22.4 107 421-527 629-751 (1012)
168 PRK11028 6-phosphogluconolacto 99.4 1.5E-10 3.3E-15 133.0 29.9 267 148-527 9-305 (330)
169 KOG2055 WD40 repeat protein [G 99.4 3.8E-11 8.3E-16 135.3 23.9 269 133-486 214-511 (514)
170 KOG0303 Actin-binding protein 99.4 1.6E-11 3.4E-16 136.1 20.0 205 236-530 76-298 (472)
171 KOG2055 WD40 repeat protein [G 99.4 2.9E-11 6.3E-16 136.3 22.3 272 191-526 213-512 (514)
172 KOG0649 WD40 repeat protein [G 99.4 7.6E-11 1.7E-15 123.6 23.2 184 129-350 59-245 (325)
173 KOG0322 G-protein beta subunit 99.4 4.1E-12 8.9E-17 134.5 13.7 72 191-271 14-86 (323)
174 KOG1517 Guanine nucleotide bin 99.4 5.6E-11 1.2E-15 144.1 24.3 280 193-528 1066-1383(1387)
175 KOG1034 Transcriptional repres 99.4 1.9E-11 4.1E-16 133.0 18.3 250 203-526 105-383 (385)
176 KOG1188 WD40 repeat protein [G 99.3 2.9E-11 6.3E-16 132.2 18.4 257 204-525 41-345 (376)
177 KOG1009 Chromatin assembly com 99.3 1.2E-10 2.6E-15 129.8 23.0 157 191-362 13-175 (434)
178 KOG1007 WD repeat protein TSSC 99.3 5.5E-11 1.2E-15 127.3 19.4 246 191-525 63-360 (370)
179 KOG0644 Uncharacterized conser 99.3 1.5E-12 3.3E-17 154.1 8.5 238 235-531 184-431 (1113)
180 KOG0322 G-protein beta subunit 99.3 2.4E-11 5.1E-16 128.8 16.3 261 233-525 6-322 (323)
181 KOG2919 Guanine nucleotide-bin 99.3 1E-10 2.2E-15 127.0 21.2 223 200-517 120-361 (406)
182 KOG0771 Prolactin regulatory e 99.3 9.3E-11 2E-15 131.6 17.3 200 195-487 148-354 (398)
183 KOG1334 WD40 repeat protein [G 99.3 8.4E-11 1.8E-15 133.3 17.0 275 188-525 140-465 (559)
184 KOG1538 Uncharacterized conser 99.3 2.4E-10 5.2E-15 132.6 20.8 265 134-486 14-292 (1081)
185 KOG4227 WD40 repeat protein [G 99.2 4.3E-10 9.4E-15 124.0 20.5 278 188-525 54-386 (609)
186 KOG1034 Transcriptional repres 99.2 9.7E-11 2.1E-15 127.5 14.3 96 148-271 112-212 (385)
187 PRK01742 tolB translocation pr 99.2 3.2E-10 7E-15 135.3 20.2 229 150-508 183-425 (429)
188 KOG4328 WD40 protein [Function 99.2 6.4E-10 1.4E-14 125.6 20.5 166 134-340 188-399 (498)
189 KOG1587 Cytoplasmic dynein int 99.2 3.1E-09 6.8E-14 128.1 26.0 280 149-526 220-516 (555)
190 KOG0307 Vesicle coat complex C 99.2 1.6E-10 3.4E-15 142.6 14.3 231 144-488 81-328 (1049)
191 KOG4378 Nuclear protein COP1 [ 99.1 5.7E-10 1.2E-14 126.5 15.8 197 148-468 98-302 (673)
192 PRK01742 tolB translocation pr 99.1 1.3E-09 2.8E-14 130.2 19.9 209 210-527 181-402 (429)
193 KOG1963 WD40 repeat protein [G 99.1 1.1E-08 2.4E-13 123.7 27.0 308 148-487 178-538 (792)
194 KOG1517 Guanine nucleotide bin 99.1 6.2E-09 1.3E-13 126.9 22.9 270 142-487 1076-1381(1387)
195 KOG0771 Prolactin regulatory e 99.1 8.9E-10 1.9E-14 123.9 13.8 199 245-527 148-355 (398)
196 KOG1007 WD repeat protein TSSC 99.1 3.5E-09 7.6E-14 113.7 17.4 231 211-527 38-290 (370)
197 KOG1445 Tumor-specific antigen 99.1 2.8E-09 6.1E-14 123.4 17.2 150 148-343 600-753 (1012)
198 KOG1009 Chromatin assembly com 99.1 1E-08 2.2E-13 114.8 20.7 115 148-275 33-158 (434)
199 KOG0974 WD-repeat protein WDR6 99.1 1.8E-08 4E-13 123.6 24.5 113 415-527 171-289 (967)
200 PRK11028 6-phosphogluconolacto 99.1 4.1E-08 9E-13 112.9 26.4 205 193-487 81-304 (330)
201 KOG1240 Protein kinase contain 99.0 1.4E-08 3.1E-13 125.7 22.6 249 191-528 1048-1336(1431)
202 PRK03629 tolB translocation pr 99.0 3.4E-08 7.3E-13 118.1 25.3 209 191-507 198-426 (429)
203 KOG1273 WD40 repeat protein [G 99.0 7.1E-08 1.5E-12 104.9 24.6 260 142-487 34-322 (405)
204 KOG0974 WD-repeat protein WDR6 98.9 9.1E-09 2E-13 126.2 15.9 188 142-490 99-291 (967)
205 PRK04922 tolB translocation pr 98.9 7E-08 1.5E-12 115.5 23.4 74 191-273 203-283 (433)
206 KOG0290 Conserved WD40 repeat- 98.9 3.3E-08 7.1E-13 106.6 18.1 114 415-528 192-320 (364)
207 KOG4227 WD40 repeat protein [G 98.9 8.9E-08 1.9E-12 106.1 21.7 285 132-486 56-386 (609)
208 KOG1240 Protein kinase contain 98.9 1.1E-07 2.4E-12 118.1 24.3 165 144-349 1062-1234(1431)
209 KOG1310 WD40 repeat protein [G 98.9 1.3E-08 2.8E-13 116.8 14.3 124 188-341 48-179 (758)
210 KOG1310 WD40 repeat protein [G 98.9 3.7E-09 8E-14 121.2 8.3 130 399-528 30-180 (758)
211 KOG1524 WD40 repeat-containing 98.9 1.3E-07 2.9E-12 108.5 20.2 202 202-521 74-281 (737)
212 KOG2110 Uncharacterized conser 98.8 5.4E-07 1.2E-11 100.3 22.7 228 193-527 7-249 (391)
213 KOG1188 WD40 repeat protein [G 98.8 4.1E-08 8.8E-13 108.0 13.3 102 433-535 87-204 (376)
214 KOG1963 WD40 repeat protein [G 98.8 6.2E-07 1.3E-11 109.0 24.5 278 197-525 22-321 (792)
215 PRK05137 tolB translocation pr 98.8 7.4E-07 1.6E-11 106.8 25.3 74 191-273 201-281 (435)
216 PF03372 Exo_endo_phos: Endonu 98.8 6.1E-09 1.3E-13 112.1 6.0 61 642-704 72-135 (249)
217 TIGR03395 sphingomy sphingomye 98.8 1.9E-07 4.1E-12 105.3 17.7 47 673-719 117-169 (283)
218 KOG0290 Conserved WD40 repeat- 98.7 2.1E-07 4.5E-12 100.5 15.0 113 144-272 114-229 (364)
219 PRK05421 hypothetical protein; 98.7 3.4E-07 7.5E-12 102.3 17.4 44 676-719 134-178 (263)
220 PRK03629 tolB translocation pr 98.7 2.5E-06 5.4E-11 102.1 25.7 206 213-525 179-405 (429)
221 PRK05137 tolB translocation pr 98.7 4.1E-06 8.9E-11 100.4 26.1 197 213-516 182-396 (435)
222 KOG3881 Uncharacterized conser 98.7 2.2E-06 4.7E-11 96.2 21.5 100 432-531 218-325 (412)
223 TIGR03300 assembly_YfgL outer 98.7 1.4E-05 3E-10 93.8 29.9 305 139-523 62-376 (377)
224 PRK02889 tolB translocation pr 98.7 2.3E-06 4.9E-11 102.4 23.3 71 191-270 195-270 (427)
225 KOG1272 WD40-repeat-containing 98.7 5.3E-08 1.2E-12 110.5 8.7 216 245-524 133-360 (545)
226 TIGR02800 propeller_TolB tol-p 98.7 3.3E-06 7.1E-11 100.2 24.6 74 191-273 189-269 (417)
227 KOG1334 WD40 repeat protein [G 98.6 2.2E-07 4.7E-12 106.2 12.9 277 148-486 161-465 (559)
228 PRK11756 exonuclease III; Prov 98.6 1.6E-07 3.4E-12 105.2 11.9 127 555-718 2-135 (268)
229 KOG2394 WD40 protein DMR-N9 [G 98.6 4.9E-08 1.1E-12 112.3 7.7 87 421-507 292-383 (636)
230 KOG2111 Uncharacterized conser 98.6 6.9E-06 1.5E-10 90.2 23.4 90 438-527 157-257 (346)
231 KOG4190 Uncharacterized conser 98.6 9.1E-08 2E-12 109.5 9.3 248 188-524 733-986 (1034)
232 PF02239 Cytochrom_D1: Cytochr 98.6 3.6E-05 7.8E-10 90.2 30.2 283 206-527 9-348 (369)
233 KOG4547 WD40 repeat-containing 98.6 1.2E-06 2.7E-11 102.6 17.7 106 420-527 103-221 (541)
234 TIGR00633 xth exodeoxyribonucl 98.6 4.6E-07 9.9E-12 100.2 13.1 37 554-594 1-38 (255)
235 PRK04922 tolB translocation pr 98.6 4.2E-06 9.2E-11 100.3 22.3 54 212-274 183-240 (433)
236 KOG1409 Uncharacterized conser 98.5 9.8E-06 2.1E-10 89.7 22.1 70 191-264 68-138 (404)
237 KOG1523 Actin-related protein 98.5 6.2E-06 1.3E-10 90.5 20.3 237 191-524 10-276 (361)
238 KOG1587 Cytoplasmic dynein int 98.5 6.9E-06 1.5E-10 99.6 22.0 236 142-487 254-516 (555)
239 PRK00178 tolB translocation pr 98.5 2.7E-05 5.8E-10 93.2 25.2 74 191-273 198-278 (430)
240 TIGR02800 propeller_TolB tol-p 98.5 2.7E-05 5.9E-10 92.3 25.0 98 426-523 284-391 (417)
241 KOG2110 Uncharacterized conser 98.5 6.1E-06 1.3E-10 92.1 17.7 154 137-342 92-250 (391)
242 TIGR03300 assembly_YfgL outer 98.4 5.4E-05 1.2E-09 88.8 26.2 264 203-527 65-339 (377)
243 PF08662 eIF2A: Eukaryotic tra 98.4 5E-06 1.1E-10 88.7 15.6 114 191-347 59-185 (194)
244 PF08662 eIF2A: Eukaryotic tra 98.4 1.9E-06 4.1E-11 91.9 12.2 103 420-526 60-179 (194)
245 PRK04792 tolB translocation pr 98.4 3.5E-05 7.5E-10 92.8 23.9 74 191-273 217-297 (448)
246 PRK02889 tolB translocation pr 98.4 2.7E-05 5.8E-10 93.3 22.8 95 425-519 289-393 (427)
247 COG3568 ElsH Metal-dependent h 98.4 6.9E-06 1.5E-10 89.9 15.8 55 657-718 101-158 (259)
248 KOG1354 Serine/threonine prote 98.4 3.2E-05 6.8E-10 85.7 20.5 300 191-522 25-397 (433)
249 KOG1272 WD40-repeat-containing 98.4 8.8E-07 1.9E-11 100.8 8.6 109 419-527 209-324 (545)
250 KOG4190 Uncharacterized conser 98.3 5.3E-07 1.1E-11 103.4 5.9 205 235-525 729-947 (1034)
251 KOG2394 WD40 protein DMR-N9 [G 98.3 1.1E-06 2.5E-11 101.4 8.2 81 142-251 301-384 (636)
252 PF02239 Cytochrom_D1: Cytochr 98.3 0.00016 3.6E-09 84.7 24.8 293 148-495 13-356 (369)
253 KOG1064 RAVE (regulator of V-A 98.3 5.3E-06 1.1E-10 106.5 12.8 99 437-547 2312-2417(2439)
254 PF00400 WD40: WD domain, G-be 98.2 2.3E-06 5E-11 66.2 6.1 37 232-268 2-39 (39)
255 PLN02919 haloacid dehalogenase 98.2 0.00054 1.2E-08 90.4 31.3 274 137-487 572-888 (1057)
256 KOG2139 WD40 repeat protein [G 98.2 0.00031 6.8E-09 78.5 24.3 160 129-339 94-267 (445)
257 KOG1064 RAVE (regulator of V-A 98.2 6.5E-06 1.4E-10 105.8 12.4 213 193-519 2210-2439(2439)
258 KOG1524 WD40 repeat-containing 98.2 3.8E-05 8.1E-10 88.9 17.4 146 394-565 115-270 (737)
259 PLN02919 haloacid dehalogenase 98.2 0.0004 8.6E-09 91.6 29.1 256 196-527 572-889 (1057)
260 KOG3914 WD repeat protein WDR4 98.2 5.1E-06 1.1E-10 93.7 9.5 99 148-275 129-228 (390)
261 KOG2321 WD40 repeat protein [G 98.2 0.00011 2.5E-09 85.9 20.3 274 239-534 49-351 (703)
262 TIGR00195 exoDNase_III exodeox 98.2 1.7E-05 3.7E-10 88.1 13.1 37 554-594 1-37 (254)
263 KOG2111 Uncharacterized conser 98.1 9.5E-05 2E-09 81.5 17.0 170 121-341 83-257 (346)
264 PRK13911 exodeoxyribonuclease 98.1 7.4E-05 1.6E-09 82.9 15.9 36 555-594 2-38 (250)
265 PRK11138 outer membrane biogen 98.1 0.0021 4.5E-08 76.2 29.3 314 139-524 66-392 (394)
266 KOG0309 Conserved WD40 repeat- 98.1 1.5E-05 3.3E-10 94.8 10.8 222 204-526 83-339 (1081)
267 PRK00178 tolB translocation pr 98.1 0.00096 2.1E-08 79.8 26.3 52 214-274 180-235 (430)
268 KOG2315 Predicted translation 98.0 0.0014 3E-08 77.2 25.8 106 419-526 270-390 (566)
269 PF00400 WD40: WD domain, G-be 98.0 1E-05 2.3E-10 62.5 5.0 37 449-485 1-39 (39)
270 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.011 2.4E-07 68.6 31.6 104 213-349 27-145 (352)
271 KOG4547 WD40 repeat-containing 98.0 0.00013 2.8E-09 86.0 15.8 123 202-362 69-194 (541)
272 PF10282 Lactonase: Lactonase, 97.9 0.022 4.9E-07 66.3 33.2 245 192-487 37-322 (345)
273 PF13360 PQQ_2: PQQ-like domai 97.9 0.0032 6.9E-08 68.4 24.4 96 430-528 122-232 (238)
274 KOG1409 Uncharacterized conser 97.9 0.00015 3.3E-09 80.5 13.0 91 435-525 170-269 (404)
275 COG5170 CDC55 Serine/threonine 97.9 0.0003 6.6E-09 77.0 15.0 78 191-271 26-118 (460)
276 KOG4497 Uncharacterized conser 97.8 0.00081 1.8E-08 74.4 18.1 99 421-519 320-425 (447)
277 KOG3881 Uncharacterized conser 97.8 0.00081 1.8E-08 76.1 18.4 150 142-346 115-283 (412)
278 PRK04792 tolB translocation pr 97.8 0.0018 3.8E-08 78.2 23.0 52 214-274 199-254 (448)
279 KOG1523 Actin-related protein 97.8 0.00088 1.9E-08 74.1 17.9 199 241-530 10-240 (361)
280 PF13360 PQQ_2: PQQ-like domai 97.8 0.0023 5.1E-08 69.4 21.2 228 150-490 2-234 (238)
281 KOG3914 WD repeat protein WDR4 97.8 6.2E-05 1.4E-09 85.2 8.8 96 435-531 127-228 (390)
282 COG2706 3-carboxymuconate cycl 97.8 0.034 7.4E-07 63.0 30.1 268 149-487 14-321 (346)
283 PLN03144 Carbon catabolite rep 97.8 0.00037 8E-09 85.5 15.8 64 690-792 418-481 (606)
284 PRK01029 tolB translocation pr 97.7 0.0062 1.3E-07 73.1 24.8 66 423-489 330-405 (428)
285 PF14874 PapD-like: Flagellar- 97.7 0.00058 1.3E-08 64.9 12.9 95 932-1068 1-100 (102)
286 KOG2321 WD40 repeat protein [G 97.7 0.00044 9.6E-09 81.1 13.6 154 146-349 150-311 (703)
287 KOG2139 WD40 repeat protein [G 97.6 0.0012 2.7E-08 73.9 15.4 96 420-515 196-300 (445)
288 COG5354 Uncharacterized protei 97.6 0.01 2.2E-07 69.4 22.9 109 419-527 274-396 (561)
289 PRK01029 tolB translocation pr 97.6 0.0077 1.7E-07 72.3 23.0 104 424-527 285-404 (428)
290 KOG2695 WD40 repeat protein [G 97.6 0.00013 2.8E-09 81.1 6.9 109 418-527 251-377 (425)
291 KOG0280 Uncharacterized conser 97.6 0.00042 9.1E-09 75.8 10.5 102 426-527 128-242 (339)
292 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.043 9.3E-07 63.8 27.7 69 425-494 253-338 (352)
293 COG0708 XthA Exonuclease III [ 97.5 0.00032 6.9E-09 77.3 9.1 110 555-703 2-113 (261)
294 KOG2041 WD40 repeat protein [G 97.4 0.013 2.8E-07 70.5 20.9 80 193-272 16-103 (1189)
295 PF08450 SGL: SMP-30/Gluconola 97.4 0.12 2.6E-06 56.9 27.9 87 421-507 135-233 (246)
296 PF10282 Lactonase: Lactonase, 97.4 0.24 5.3E-06 57.6 31.7 269 206-526 2-322 (345)
297 KOG2314 Translation initiation 97.3 0.039 8.5E-07 65.2 23.4 105 421-526 447-573 (698)
298 KOG2695 WD40 repeat protein [G 97.3 0.00076 1.6E-08 75.1 8.7 130 191-348 252-384 (425)
299 KOG4497 Uncharacterized conser 97.3 0.0021 4.5E-08 71.3 11.8 207 197-485 14-238 (447)
300 PRK11138 outer membrane biogen 97.3 0.054 1.2E-06 64.2 25.0 96 430-527 256-354 (394)
301 PTZ00297 pantothenate kinase; 97.3 0.0065 1.4E-07 82.1 18.9 43 674-717 130-177 (1452)
302 KOG1354 Serine/threonine prote 97.2 0.0041 9E-08 69.4 12.8 142 191-352 164-314 (433)
303 KOG0280 Uncharacterized conser 97.1 0.024 5.1E-07 62.5 17.8 91 414-505 160-260 (339)
304 smart00476 DNaseIc deoxyribonu 97.1 0.0037 8E-08 70.2 12.0 70 631-701 78-154 (276)
305 PRK04043 tolB translocation pr 97.1 0.098 2.1E-06 62.7 24.4 72 193-273 189-268 (419)
306 KOG2315 Predicted translation 97.0 0.087 1.9E-06 62.6 21.5 73 420-492 312-395 (566)
307 COG4946 Uncharacterized protei 96.8 0.66 1.4E-05 54.3 26.6 76 191-275 359-436 (668)
308 KOG2114 Vacuolar assembly/sort 96.7 0.078 1.7E-06 65.7 19.5 81 420-501 172-259 (933)
309 PRK15251 cytolethal distending 96.7 0.047 1E-06 60.8 16.1 38 675-718 140-177 (271)
310 smart00320 WD40 WD40 repeats. 96.7 0.0037 8.1E-08 45.3 5.1 36 233-268 4-40 (40)
311 COG4946 Uncharacterized protei 96.7 0.2 4.2E-06 58.5 20.8 112 416-527 356-478 (668)
312 KOG0309 Conserved WD40 repeat- 96.6 0.0088 1.9E-07 72.2 9.8 111 415-526 110-232 (1081)
313 COG2706 3-carboxymuconate cycl 96.5 2.1 4.6E-05 48.9 28.3 260 212-526 15-321 (346)
314 KOG2756 Predicted Mg2+-depende 96.1 0.022 4.8E-07 61.9 8.9 38 682-719 197-234 (349)
315 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.14 3.1E-06 49.3 13.3 95 422-520 2-108 (111)
316 PRK04043 tolB translocation pr 96.1 1.4 3E-05 53.0 24.9 100 426-526 283-398 (419)
317 smart00320 WD40 WD40 repeats. 96.1 0.013 2.7E-07 42.4 4.9 37 449-485 2-40 (40)
318 COG5354 Uncharacterized protei 96.0 1.8 4E-05 51.3 24.4 106 387-492 278-400 (561)
319 PF08450 SGL: SMP-30/Gluconola 95.9 3.7 8E-05 45.1 27.7 55 422-476 186-244 (246)
320 PF11768 DUF3312: Protein of u 95.8 0.033 7.1E-07 66.8 9.6 71 191-271 259-330 (545)
321 KOG4532 WD40-like repeat conta 95.8 0.34 7.3E-06 53.2 16.1 100 144-271 131-234 (344)
322 PF15492 Nbas_N: Neuroblastoma 95.8 0.84 1.8E-05 50.8 19.4 55 195-252 47-102 (282)
323 PF00635 Motile_Sperm: MSP (Ma 95.8 0.041 8.9E-07 52.6 8.6 62 936-1019 3-69 (109)
324 KOG0882 Cyclophilin-related pe 95.8 0.027 5.9E-07 65.0 8.3 66 202-272 19-86 (558)
325 KOG3873 Sphingomyelinase famil 95.7 0.023 5E-07 64.3 7.1 206 636-900 73-294 (422)
326 KOG4714 Nucleoporin [Nuclear s 95.7 0.012 2.6E-07 63.8 4.6 67 461-527 181-255 (319)
327 KOG2444 WD40 repeat protein [G 95.7 0.02 4.4E-07 61.3 6.3 97 431-527 71-178 (238)
328 PF15492 Nbas_N: Neuroblastoma 95.6 4.1 9E-05 45.5 23.8 68 197-271 3-74 (282)
329 PF07433 DUF1513: Protein of u 95.5 3.3 7.1E-05 47.2 23.4 98 418-518 161-278 (305)
330 KOG0882 Cyclophilin-related pe 95.5 0.098 2.1E-06 60.6 11.3 93 436-528 118-233 (558)
331 PF07433 DUF1513: Protein of u 95.4 2.7 5.8E-05 47.9 22.3 53 197-256 56-114 (305)
332 KOG1645 RING-finger-containing 95.2 0.3 6.6E-06 56.1 13.9 73 191-272 193-268 (463)
333 COG5170 CDC55 Serine/threonine 95.2 0.063 1.4E-06 59.4 8.1 144 191-353 172-323 (460)
334 KOG4714 Nucleoporin [Nuclear s 95.2 0.016 3.4E-07 62.9 3.4 72 193-271 181-255 (319)
335 PF04762 IKI3: IKI3 family; I 95.1 9.9 0.00022 50.2 29.3 67 191-267 75-147 (928)
336 KOG2041 WD40 repeat protein [G 95.1 1.4 2.9E-05 54.0 19.2 112 143-269 26-144 (1189)
337 KOG2338 Transcriptional effect 95.0 0.053 1.1E-06 64.1 7.4 54 666-719 226-282 (495)
338 KOG1275 PAB-dependent poly(A) 95.0 0.067 1.4E-06 66.6 8.4 95 433-527 150-255 (1118)
339 KOG2066 Vacuolar assembly/sort 94.9 0.16 3.5E-06 62.7 11.5 96 429-527 81-188 (846)
340 PF11768 DUF3312: Protein of u 94.7 0.087 1.9E-06 63.3 8.4 68 419-487 259-329 (545)
341 cd00216 PQQ_DH Dehydrogenases 94.6 15 0.00032 45.1 28.1 58 439-496 365-434 (488)
342 COG3386 Gluconolactonase [Carb 94.6 4.9 0.00011 46.2 21.9 59 420-478 213-276 (307)
343 cd00216 PQQ_DH Dehydrogenases 94.3 14 0.00029 45.5 26.3 93 433-528 304-426 (488)
344 KOG2066 Vacuolar assembly/sort 93.5 2.5 5.4E-05 52.8 17.2 109 200-349 80-196 (846)
345 PF08553 VID27: VID27 cytoplas 93.4 1.3 2.7E-05 56.7 15.3 66 420-486 578-646 (794)
346 KOG1832 HIV-1 Vpr-binding prot 93.1 0.11 2.3E-06 64.4 5.0 73 191-271 1101-1176(1516)
347 KOG1275 PAB-dependent poly(A) 92.7 1.8 3.9E-05 54.6 14.6 71 191-272 177-256 (1118)
348 KOG2079 Vacuolar assembly/sort 92.3 0.25 5.4E-06 62.9 6.8 91 433-525 102-202 (1206)
349 KOG4640 Anaphase-promoting com 92.2 0.55 1.2E-05 56.9 9.3 86 422-507 23-114 (665)
350 PF04762 IKI3: IKI3 family; I 92.2 28 0.0006 46.2 25.7 105 421-526 211-333 (928)
351 KOG1645 RING-finger-containing 92.2 0.43 9.3E-06 54.9 7.9 89 416-505 190-288 (463)
352 KOG1912 WD40 repeat protein [G 91.6 0.53 1.1E-05 58.0 8.2 107 422-529 18-146 (1062)
353 KOG2444 WD40 repeat protein [G 91.4 0.61 1.3E-05 50.4 7.7 105 139-271 67-178 (238)
354 KOG2395 Protein involved in va 91.4 2.1 4.5E-05 51.2 12.5 65 421-486 432-499 (644)
355 PF14783 BBS2_Mid: Ciliary BBS 89.9 2.6 5.7E-05 40.8 9.7 55 204-269 16-70 (111)
356 KOG1832 HIV-1 Vpr-binding prot 89.8 0.25 5.5E-06 61.3 3.5 116 415-536 1097-1224(1516)
357 KOG4532 WD40-like repeat conta 89.6 2.9 6.2E-05 46.2 10.8 80 192-274 204-286 (344)
358 KOG2114 Vacuolar assembly/sort 89.4 14 0.00031 46.8 17.8 125 191-349 125-252 (933)
359 PF00780 CNH: CNH domain; Int 89.2 41 0.00089 37.4 24.7 74 421-497 191-266 (275)
360 PF04841 Vps16_N: Vps16, N-ter 89.0 59 0.0013 39.0 27.1 49 214-271 62-110 (410)
361 KOG2079 Vacuolar assembly/sort 89.0 0.76 1.6E-05 58.8 6.8 66 419-486 130-202 (1206)
362 KOG1912 WD40 repeat protein [G 88.7 4.9 0.00011 50.1 13.0 91 432-522 81-182 (1062)
363 COG3292 Predicted periplasmic 88.3 25 0.00055 42.9 18.2 99 142-268 216-316 (671)
364 PF08553 VID27: VID27 cytoplas 88.2 3.9 8.4E-05 52.4 12.4 93 432-525 544-646 (794)
365 KOG1920 IkappaB kinase complex 87.6 36 0.00079 44.9 20.2 87 440-526 222-322 (1265)
366 KOG3621 WD40 repeat-containing 87.0 28 0.00061 43.4 18.0 115 197-341 39-155 (726)
367 COG3386 Gluconolactonase [Carb 86.7 66 0.0014 37.1 20.3 98 418-515 161-274 (307)
368 KOG4649 PQQ (pyrrolo-quinoline 86.4 60 0.0013 36.2 23.6 59 198-265 100-160 (354)
369 KOG3617 WD40 and TPR repeat-co 86.0 4.9 0.00011 50.4 10.9 68 194-270 62-131 (1416)
370 COG3292 Predicted periplasmic 85.6 38 0.00083 41.5 17.7 111 126-266 158-271 (671)
371 PF14529 Exo_endo_phos_2: Endo 84.6 1.6 3.5E-05 41.9 5.2 13 764-776 32-44 (119)
372 PF04053 Coatomer_WDAD: Coatom 83.6 90 0.0019 37.9 20.4 61 193-267 34-94 (443)
373 PRK13616 lipoprotein LpqB; Pro 81.3 67 0.0014 40.5 18.7 61 423-483 500-564 (591)
374 TIGR03118 PEPCTERM_chp_1 conse 80.3 1.2E+02 0.0025 34.9 20.9 66 434-499 216-292 (336)
375 KOG3621 WD40 repeat-containing 79.8 7.3 0.00016 48.3 9.2 102 148-271 52-155 (726)
376 PRK02888 nitrous-oxide reducta 79.5 48 0.001 41.6 16.1 68 420-487 321-404 (635)
377 KOG4640 Anaphase-promoting com 79.2 7.1 0.00015 47.8 8.8 75 192-275 21-97 (665)
378 PF12894 Apc4_WD40: Anaphase-p 78.3 5.9 0.00013 32.4 5.4 32 191-222 11-42 (47)
379 KOG2395 Protein involved in va 77.7 9.1 0.0002 46.1 8.8 103 422-525 378-499 (644)
380 KOG2314 Translation initiation 76.3 10 0.00022 45.8 8.7 106 424-532 215-340 (698)
381 PF14870 PSII_BNR: Photosynthe 73.8 41 0.00088 38.7 12.7 66 191-268 144-213 (302)
382 KOG1916 Nuclear protein, conta 72.9 2.7 5.8E-05 53.0 3.1 94 433-526 198-323 (1283)
383 KOG4649 PQQ (pyrrolo-quinoline 72.8 1.7E+02 0.0036 32.9 24.2 110 203-352 23-135 (354)
384 PRK02888 nitrous-oxide reducta 71.7 1.3E+02 0.0029 37.8 17.1 33 243-275 322-356 (635)
385 KOG1920 IkappaB kinase complex 71.1 48 0.001 43.9 13.5 71 196-271 246-323 (1265)
386 KOG0439 VAMP-associated protei 70.1 11 0.00024 40.9 6.9 49 947-1017 26-74 (218)
387 PF04053 Coatomer_WDAD: Coatom 69.3 42 0.0009 40.7 12.1 133 387-525 36-172 (443)
388 KOG1900 Nuclear pore complex, 69.2 36 0.00079 45.4 12.0 66 420-487 179-272 (1311)
389 PF06433 Me-amine-dh_H: Methyl 69.0 2.4E+02 0.0051 33.1 21.4 48 480-528 270-322 (342)
390 TIGR03075 PQQ_enz_alc_DH PQQ-d 67.2 3.2E+02 0.007 34.0 25.6 54 478-531 440-495 (527)
391 PF14655 RAB3GAP2_N: Rab3 GTPa 65.3 27 0.00058 41.9 9.2 39 468-506 78-116 (415)
392 PF12894 Apc4_WD40: Anaphase-p 64.8 14 0.00031 30.2 4.8 33 420-452 12-45 (47)
393 COG5167 VID27 Protein involved 63.1 84 0.0018 38.1 12.3 65 422-487 565-632 (776)
394 KOG1008 Uncharacterized conser 61.8 3.9 8.5E-05 50.0 1.4 125 418-545 101-242 (783)
395 KOG4499 Ca2+-binding protein R 59.8 44 0.00095 36.7 8.6 95 423-517 161-276 (310)
396 PF07569 Hira: TUP1-like enhan 58.1 43 0.00092 36.6 8.6 75 134-221 14-95 (219)
397 KOG1916 Nuclear protein, conta 57.9 12 0.00026 47.6 4.6 65 467-531 193-270 (1283)
398 PRK13616 lipoprotein LpqB; Pro 57.7 4.7E+02 0.01 33.1 18.7 97 421-518 449-560 (591)
399 PF07610 DUF1573: Protein of u 57.6 39 0.00085 27.2 6.1 21 996-1016 24-44 (45)
400 PF04841 Vps16_N: Vps16, N-ter 57.3 91 0.002 37.4 12.0 50 441-490 62-112 (410)
401 PF00345 PapD_N: Pili and flag 55.6 65 0.0014 31.4 8.7 67 936-1015 3-70 (122)
402 PF06280 DUF1034: Fn3-like dom 55.6 10 0.00022 36.7 2.9 71 945-1019 7-80 (112)
403 PF14655 RAB3GAP2_N: Rab3 GTPa 55.2 99 0.0021 37.2 11.6 39 236-274 302-341 (415)
404 PLN00033 photosystem II stabil 53.4 3.9E+02 0.0085 32.1 16.2 130 393-523 248-396 (398)
405 KOG4499 Ca2+-binding protein R 51.1 2.9E+02 0.0062 30.7 12.9 96 245-360 161-261 (310)
406 KOG1900 Nuclear pore complex, 50.9 75 0.0016 42.6 10.2 77 192-271 179-273 (1311)
407 PF03178 CPSF_A: CPSF A subuni 50.8 2.1E+02 0.0045 32.8 13.3 105 420-526 89-202 (321)
408 COG0823 TolB Periplasmic compo 49.7 39 0.00084 40.8 7.1 100 424-526 242-353 (425)
409 PF08596 Lgl_C: Lethal giant l 46.5 5.9E+02 0.013 30.5 24.7 83 193-275 3-120 (395)
410 PF14583 Pectate_lyase22: Olig 46.5 5.8E+02 0.013 30.5 24.4 69 199-274 43-114 (386)
411 PF07569 Hira: TUP1-like enhan 44.4 84 0.0018 34.4 8.2 69 199-270 18-95 (219)
412 PF06433 Me-amine-dh_H: Methyl 43.5 6.1E+02 0.013 29.8 21.7 54 441-495 270-329 (342)
413 PF00780 CNH: CNH domain; Int 43.2 4.9E+02 0.011 28.7 24.5 158 142-348 7-173 (275)
414 KOG4659 Uncharacterized conser 43.0 9.8E+02 0.021 32.9 17.8 23 196-221 479-502 (1899)
415 COG3490 Uncharacterized protei 41.9 2.2E+02 0.0048 32.4 10.7 62 198-267 120-186 (366)
416 PF14761 HPS3_N: Hermansky-Pud 40.9 3.4E+02 0.0073 29.7 11.7 117 204-341 29-164 (215)
417 KOG1008 Uncharacterized conser 40.8 12 0.00027 45.9 1.1 97 149-269 127-224 (783)
418 PF10313 DUF2415: Uncharacteri 40.6 68 0.0015 25.9 4.8 31 192-222 1-34 (43)
419 PF10313 DUF2415: Uncharacteri 38.1 75 0.0016 25.7 4.7 30 242-271 1-34 (43)
420 PF11715 Nup160: Nucleoporin N 37.7 43 0.00094 41.6 5.3 32 193-224 216-251 (547)
421 PF11715 Nup160: Nucleoporin N 36.5 41 0.00089 41.8 4.8 30 429-458 229-259 (547)
422 COG3391 Uncharacterized conser 36.0 4E+02 0.0087 31.5 12.8 103 423-526 119-239 (381)
423 PF08596 Lgl_C: Lethal giant l 36.0 1.5E+02 0.0032 35.6 9.0 68 419-486 86-172 (395)
424 PF02897 Peptidase_S9_N: Proly 35.7 3E+02 0.0065 32.6 11.8 108 137-271 128-261 (414)
425 PF05694 SBP56: 56kDa selenium 35.0 3.2E+02 0.007 33.0 11.3 27 422-448 314-342 (461)
426 PF03178 CPSF_A: CPSF A subuni 34.9 2.4E+02 0.0053 32.2 10.6 115 128-270 84-202 (321)
427 PF14646 MYCBPAP: MYCBP-associ 33.2 1.1E+02 0.0024 37.0 7.5 93 945-1053 247-342 (426)
428 TIGR03074 PQQ_membr_DH membran 32.5 1.3E+03 0.028 30.3 17.6 68 202-278 259-352 (764)
429 KOG3870 Uncharacterized conser 31.4 18 0.0004 42.2 0.5 18 758-775 348-365 (434)
430 PF07995 GSDH: Glucose / Sorbo 30.2 3.6E+02 0.0078 31.3 10.9 57 421-477 3-71 (331)
431 TIGR03075 PQQ_enz_alc_DH PQQ-d 30.1 2.7E+02 0.0059 34.6 10.4 65 430-494 69-146 (527)
432 KOG3616 Selective LIM binding 29.4 92 0.002 39.2 5.8 68 194-271 17-84 (1636)
433 PF14870 PSII_BNR: Photosynthe 29.4 9.3E+02 0.02 27.8 15.1 134 390-523 151-301 (302)
434 PHA02713 hypothetical protein; 28.0 3.1E+02 0.0067 34.4 10.5 78 441-518 433-523 (557)
435 COG5066 SCS2 VAMP-associated p 27.9 1.4E+02 0.0031 32.2 6.2 51 946-1018 17-67 (242)
436 PF12234 Rav1p_C: RAVE protein 27.4 6.5E+02 0.014 32.1 12.8 128 440-588 1-145 (631)
437 KOG2377 Uncharacterized conser 27.2 5.2E+02 0.011 31.4 11.1 108 141-270 33-140 (657)
438 PRK13684 Ycf48-like protein; P 27.0 1.9E+02 0.004 33.7 7.8 64 191-266 172-239 (334)
439 COG3021 Uncharacterized protei 26.1 45 0.00098 38.2 2.4 44 675-719 173-218 (309)
440 TIGR03074 PQQ_membr_DH membran 25.7 3.3E+02 0.0072 35.5 10.3 27 468-494 259-286 (764)
441 PF12341 DUF3639: Protein of u 25.0 1.3E+02 0.0028 21.9 3.7 24 461-484 3-26 (27)
442 PF03088 Str_synth: Strictosid 24.2 2.1E+02 0.0046 26.8 6.1 36 210-254 34-69 (89)
443 PRK13202 ureB urease subunit b 24.0 1.6E+02 0.0034 28.4 5.1 71 935-1016 6-83 (104)
444 PF04744 Monooxygenase_B: Mono 23.9 2E+02 0.0043 33.8 7.0 24 995-1019 312-335 (381)
445 PF05096 Glu_cyclase_2: Glutam 23.7 1.1E+03 0.024 26.7 17.0 113 131-274 43-161 (264)
446 TIGR02604 Piru_Ver_Nterm putat 22.6 1.1E+03 0.024 27.5 13.4 30 419-449 71-100 (367)
447 PF05694 SBP56: 56kDa selenium 22.5 4.7E+02 0.01 31.7 9.8 90 439-528 221-344 (461)
448 KOG1983 Tomosyn and related SN 22.2 1.1E+03 0.023 32.1 14.2 30 192-221 36-65 (993)
449 PF10168 Nup88: Nuclear pore c 22.0 1.3E+03 0.028 30.0 14.5 78 193-271 86-180 (717)
450 COG3823 Glutamine cyclotransfe 21.5 1.1E+03 0.024 25.9 12.2 33 133-165 46-82 (262)
451 KOG3617 WD40 and TPR repeat-co 21.4 1.4E+02 0.0029 38.5 5.3 86 440-526 41-131 (1416)
452 smart00564 PQQ beta-propeller 21.1 1.6E+02 0.0035 21.2 3.8 23 430-452 6-29 (33)
453 TIGR02604 Piru_Ver_Nterm putat 21.1 4.3E+02 0.0094 31.0 9.5 73 193-270 15-99 (367)
454 PF12768 Rax2: Cortical protei 20.6 6.4E+02 0.014 28.8 10.2 87 152-268 17-121 (281)
455 COG3391 Uncharacterized conser 20.3 1.4E+03 0.031 26.8 22.2 71 195-275 77-153 (381)
456 PLN00033 photosystem II stabil 20.2 9.1E+02 0.02 29.0 11.9 97 388-484 285-396 (398)
457 PF07676 PD40: WD40-like Beta 20.2 3.2E+02 0.0069 20.6 5.5 28 240-267 7-38 (39)
458 COG0832 UreB Urea amidohydrola 20.0 2.6E+02 0.0056 26.8 5.6 83 935-1027 6-94 (106)
No 1
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-87 Score=790.56 Aligned_cols=339 Identities=35% Similarity=0.626 Sum_probs=308.9
Q ss_pred CCCceEEeeecCCCCCchhhHHHhhccccccceecccceEEEEEEeCCCCCC-chhhhccccCC--C---CCceeEEEEE
Q 001245 516 NHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRAS-QDALISWLGSA--A---SDVGIVVVGL 589 (1115)
Q Consensus 516 ~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~~~-~~~L~~wl~~~--~---~~~Di~viGl 589 (1115)
.|..+.+.| |+...+.++|++|+.+|+..++|+||||||||||+.+. .++|.+||.+. . ..+|||||||
T Consensus 506 ~q~~v~L~d-----pv~~yv~~~L~er~~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~ 580 (1080)
T KOG0566|consen 506 AQSAVILYD-----PVHEYVLKELRERRSEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGF 580 (1080)
T ss_pred ccchhhhcC-----chhHHHHHHHHHhhhhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEee
Confidence 466666665 46788999999999999999999999999999985443 36899999854 2 2589999999
Q ss_pred ecc-cCccchhhhhhhhhhhcCCCCcchhhHHHHHhcccCC-CCceEEEeeeccccEEEEEEEeccccCccCceeeeeee
Q 001245 590 QEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDD-GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVP 667 (1115)
Q Consensus 590 QEi-~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L~~-~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~ 667 (1115)
||| +++++++... +..+.+.|++.|++.|+. +.+|+++.|.||+|++|++|+|+++.++|++|..++++
T Consensus 581 eEvVeLnag~iv~A---------s~tk~~~Wee~i~~~Ln~~~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~~~tkK 651 (1080)
T KOG0566|consen 581 EEVVELNAGNIVSA---------STTKRRFWEEKILKTLNRYKNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVAGDTKK 651 (1080)
T ss_pred hhhhhcCccceecc---------ChHHHHHHHHHHHHHhcCCCCceEEEehhhhheeeEEEEEcccccchhhhcccceee
Confidence 997 7998876321 234568899999999987 88999999999999999999999999999999999999
Q ss_pred eeccccccCcceEEEEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCC
Q 001245 668 CGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNP 747 (1115)
Q Consensus 668 tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1115)
|||||+.||||||||||.+++|+|||||+|||||++|+++||.||.+|.++|+|+++.
T Consensus 652 TGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr---------------------- 709 (1080)
T KOG0566|consen 652 TGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGR---------------------- 709 (1080)
T ss_pred cccccccCCCceEEEEEEeccccEEEEecccccccchHhhhhhhHHHHHHhccccCCc----------------------
Confidence 9999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCcccCCCCcCCcceEEEecccccccCCCChHHHHHHHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccc
Q 001245 748 LSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKF 827 (1115)
Q Consensus 748 ~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKy 827 (1115)
+|.+||+|||||||||||++ ++|||+++|.+++|+.|+++|||++||.+|++|.||.|++|+|+|||||
T Consensus 710 ----------~I~~HD~ifW~GDFNYRI~l-~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKy 778 (1080)
T KOG0566|consen 710 ----------MIFSHDYIFWLGDFNYRIDL-SNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKY 778 (1080)
T ss_pred ----------cccCCceEEEecccceeecC-CHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccc
Confidence 37899999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccccCCccccccccceeeeecCCCcccccccCCCccccceeeeeeccccccCCCCceeeEEEEEeeccCHHH
Q 001245 828 EKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVDESV 907 (1115)
Q Consensus 828 d~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~v~~~~ 907 (1115)
|. ||+.||||||+|+||||||||||+... .++.|.+++ +++||||||+|+|+++|..||+++
T Consensus 779 D~---gTd~YDTSeK~R~PAWTDRIL~r~e~~--------------~~l~Y~~~e-l~~SDHRPV~A~~~a~i~~Vd~~k 840 (1080)
T KOG0566|consen 779 DP---GTDDYDTSEKCRTPAWTDRILWRGEKL--------------ELLSYKRAE-LKTSDHRPVYAIFRAEIFEVDEQK 840 (1080)
T ss_pred cC---CCCccccchhccCccchhhheeccccc--------------ccccccccc-ccccCCCceEEEEEEEEEEEcHHH
Confidence 96 568999999999999999999998753 247898865 999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 001245 908 RRQEFGDIMTSN 919 (1115)
Q Consensus 908 ~~~~~~ei~~~~ 919 (1115)
|.++|+|+++.+
T Consensus 841 k~~l~eev~~~~ 852 (1080)
T KOG0566|consen 841 KLRLFEEVKERL 852 (1080)
T ss_pred HHHHHHHHHHHc
Confidence 999999999864
No 2
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=4.8e-78 Score=699.31 Aligned_cols=249 Identities=35% Similarity=0.632 Sum_probs=220.9
Q ss_pred HHHHHhcccCCCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecc
Q 001245 619 WLDMIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHF 698 (1115)
Q Consensus 619 W~~~l~~~L~~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HL 698 (1115)
|...+........+|++|.++||+||+|+||||+++.++|++|++++|+||+||++||||||+|||.|++++||||||||
T Consensus 350 ~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HL 429 (621)
T PLN03191 350 PEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHL 429 (621)
T ss_pred hhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEecc
Confidence 44444444455678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccch--hHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEecccccccC
Q 001245 699 AAHLE--AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLD 776 (1115)
Q Consensus 699 aA~~~--~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~ 776 (1115)
|||++ ++++||+||.+|++++.|...... .....|.+||+|||||||||||+
T Consensus 430 AAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~--------------------------~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 430 TSGHKDGAEQRRNADVYEIIRRTRFSSVLDT--------------------------DQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred ccccccchHHHHHHHHHHHHhccccCccccc--------------------------CCCccccccceEEEecCcccccc
Confidence 99875 478999999999999999742110 01124778999999999999999
Q ss_pred CCChHHHHHHHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccc-----cCCccccccccce
Q 001245 777 GITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYD-----SGEKKRVPAWCDR 851 (1115)
Q Consensus 777 ~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yD-----ts~k~R~PsWcDR 851 (1115)
+ ++++++++|.+++|+.||++|||+++|++|++|.||+|++|+|||||||++++ +.|| ||+|+|+||||||
T Consensus 484 l-~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gS---d~Ydg~~~~Ts~KkR~PSWCDR 559 (621)
T PLN03191 484 M-LDTEVRKLVAQKRWDELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINS---DRYVGENPKEGEKKRSPAWCDR 559 (621)
T ss_pred C-CHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCC---ccccccccccccCccccchhhe
Confidence 6 89999999999999999999999999999999999999999999999999865 5786 8999999999999
Q ss_pred eeeecCCCcccccccCCCccccceeeeeeccccccCCCCceeeEEEEEeeccCHHHHHHHH
Q 001245 852 ILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVDESVRRQEF 912 (1115)
Q Consensus 852 IL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~v~~~~~~~~~ 912 (1115)
|||++... +++.|.+ .++++||||||+|.|.++|+++|+.|.++++
T Consensus 560 ILykg~~i--------------~~l~Y~s-~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~ 605 (621)
T PLN03191 560 ILWLGKGI--------------KQLCYKR-SEIRLSDHRPVSSMFLVEVEVFDHRKLQRAL 605 (621)
T ss_pred EeecCCCc--------------eEeEecc-CCcccCCchhcceEEEEEEEecCHHHHHhhh
Confidence 99997532 4578987 6899999999999999999999998776654
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=2.3e-74 Score=651.22 Aligned_cols=300 Identities=41% Similarity=0.735 Sum_probs=263.3
Q ss_pred ccceEEEEEEeCCCC-CCchhhhccccCC-----CCCceeEEEEEecc-cCccchhhhhhhhhhhcCCCCcchhhHHHHH
Q 001245 551 NLKILAGTWNVGQGR-ASQDALISWLGSA-----ASDVGIVVVGLQEV-EMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (1115)
Q Consensus 551 ~irI~v~TWNv~~~~-~~~~~L~~wl~~~-----~~~~Di~viGlQEi-~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l 623 (1115)
+++|+|+|||||+.. ++.++|.+||... ..+||||||||||+ ++.+..+.+ ..+.....|.+.+
T Consensus 2 ~~~v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~---------~~~~~~~~W~~~i 72 (310)
T smart00128 2 DIKVLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE---------TIAGKERLWSKLI 72 (310)
T ss_pred ceEEEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh---------ccchhHHHHHHHH
Confidence 689999999999875 5678999999753 25799999999999 565543322 1233457799999
Q ss_pred hcccCCCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccch
Q 001245 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (1115)
Q Consensus 624 ~~~L~~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~ 703 (1115)
...|..+..|.++++.+|+||+|+||+|+++.++|++|.+++++||++|.+||||||+++|.+++++||||||||+||++
T Consensus 73 ~~~l~~~~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~ 152 (310)
T smart00128 73 ESSLNGDGQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGAS 152 (310)
T ss_pred HHhcCCCCceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccc
Confidence 99997668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEecccccccCCCChHHH
Q 001245 704 AVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEA 783 (1115)
Q Consensus 704 ~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v 783 (1115)
++++||+||.+|++++.|+.... ..+.+||++||||||||||++...+++
T Consensus 153 ~~~~R~~~~~~I~~~~~f~~~~~------------------------------~~~~~~d~~f~~GDlNyRi~~~~~~~v 202 (310)
T smart00128 153 NVEQRNQDYKTILRALSFPERAE------------------------------LSQFDHDVVFWFGDLNFRLDSPSYEEV 202 (310)
T ss_pred hhhhhHHHHHHHHHhcCCCCCcc------------------------------ccccccceEEEecCcceeecCCCHHHH
Confidence 99999999999999999875321 114589999999999999997333899
Q ss_pred HHHHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCcccc-ccccCCcccccCCccccccccceeeeecCCCccc
Q 001245 784 RDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFE-KHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLA 862 (1115)
Q Consensus 784 ~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd-~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~ 862 (1115)
+++|++++|+.|+++|||+.+++++++|.||.|++|+|||||||+ . |++.||+++|+|+|||||||||+......
T Consensus 203 ~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~I~F~PTYK~~~~---~t~~Yd~~~k~R~PsWcDRIL~~~~~~~~- 278 (310)
T smart00128 203 RRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGPITFPPTYKYDSV---GTETYDTSEKKRVPAWCDRILYRSNGPNL- 278 (310)
T ss_pred HHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCCcCCCCCeeecCC---CCccccCcccccCcchhheehhhccCCCc-
Confidence 999999999999999999999999999999999999999999999 5 45789999999999999999999732211
Q ss_pred ccccCCCcccccee-eeeeccccccCCCCceeeEEEEEeeccC
Q 001245 863 SECSLECPVASSIL-RYEACMDVTDSDHKPVRCIFSVDIARVD 904 (1115)
Q Consensus 863 ~~~~~~~p~~~~~~-~Y~s~~~~~~SDHkPV~a~f~v~v~~v~ 904 (1115)
... .|.+++++.+||||||+|.|.|+++.++
T Consensus 279 -----------~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 279 -----------IQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred -----------eecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 123 3999999999999999999999998775
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-66 Score=576.71 Aligned_cols=331 Identities=32% Similarity=0.508 Sum_probs=296.1
Q ss_pred CCCCchhhHHHhhccccccceecccceEEEEEEeCCCCCCchhhhccccC---CCCCceeEEEEEecc-cCccchhhhhh
Q 001245 528 PGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGS---AASDVGIVVVGLQEV-EMGAGFLAMSA 603 (1115)
Q Consensus 528 p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~~~~~~L~~wl~~---~~~~~Di~viGlQEi-~~~~~~~~~~~ 603 (1115)
++|+...+..++.+++.+|+..+++.+|++|+|.++..+ ..+++.||.+ ...-+|+||+||||+ .++++.+. +
T Consensus 6 ~~p~~~y~~~~l~~~~sk~~~~~~~~~f~~~~n~~~~~~-k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sil-s- 82 (460)
T COG5411 6 YDPRHPYIVAVLRQRRSKYVIEKDVSIFVSTFNPPGKPP-KASTKRWLFPEIEATELADLYVVGLQEVVELTPGSIL-S- 82 (460)
T ss_pred cCCCchhHHHHHHHHhhhheeecceeeEeccccCCCCCc-hhhhhhhcccccccccccceEEeccceeeeccchhhc-c-
Confidence 467778889999999999999999999999999997655 7889999986 224589999999997 56665542 1
Q ss_pred hhhhhcCCCCcchhhHHHHHhcccC---CCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceE
Q 001245 604 AKETVGLEGSAVGHWWLDMIGKILD---DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAV 680 (1115)
Q Consensus 604 ~ke~~~~~~s~~~~~W~~~l~~~L~---~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV 680 (1115)
.....+-..|+..+...|+ ...+|.++.+.||+|+++.||.+.+..+.+.+|..+.-+||++|..+|||+|
T Consensus 83 ------~~p~~rl~~wes~~~~~Ln~~~~~eky~~l~s~q~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav 156 (460)
T COG5411 83 ------ADPYDRLRIWESKVLDCLNGAQSDEKYSLLRSPQLGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAV 156 (460)
T ss_pred ------CCcccccchhHHHHHHHhcccccCCceEEecchhccCcceEEeeeccccceeccccccccccccceeccccccc
Confidence 1223445779999999887 3578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcC
Q 001245 681 GLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELS 760 (1115)
Q Consensus 681 ~ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 760 (1115)
+++|.+..+.+||||||||||.+|+++|+.||..|.+.++|+++. .|.
T Consensus 157 ~i~~~~~~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~--------------------------------~I~ 204 (460)
T COG5411 157 AIRFNYERTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGL--------------------------------RIY 204 (460)
T ss_pred ceeEEeecCCcEEEecchhcccccHHHHHHHHHHHHHheecCCCc--------------------------------eec
Confidence 999999999999999999999999999999999999999997642 378
Q ss_pred CcceEEEecccccccCCCChHHHHHHHhhcC--hhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccc
Q 001245 761 EADMVIFLGDFNYRLDGITYDEARDFISQRC--FDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYD 838 (1115)
Q Consensus 761 ~~D~vfw~GDlNyRi~~~~~~~v~~~i~~~~--~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yD 838 (1115)
+||.+||+|||||||++ ++++++..+...+ +++|+++|||..||..|.+|.+|.|..|+|||||||+. ||+.||
T Consensus 205 ~hdti~w~GDlNyRVts-~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~---gt~~yd 280 (460)
T COG5411 205 DHDTIFWLGDLNYRVTS-TNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDY---GTDEYD 280 (460)
T ss_pred ccceEEEecccCceeec-CchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeec---CCcccc
Confidence 99999999999999997 8999998888777 89999999999999999999999999999999999995 668999
Q ss_pred cCCccccccccceeeeecCCCcccccccCCCccccceeeeeeccccccCCCCceeeEEEEEeeccCHHHHHHHHHHHhh
Q 001245 839 SGEKKRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVDESVRRQEFGDIMT 917 (1115)
Q Consensus 839 ts~k~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~v~~~~~~~~~~ei~~ 917 (1115)
+++|.|+|||||||||++..- ....|.+++.+++||||||+|+|++++..+|+.++....+++.-
T Consensus 281 tsdk~RiPsWtDRIl~~s~~~--------------~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~k~~~~~~l~~ 345 (460)
T COG5411 281 TSDKGRIPSWTDRILYKSEQL--------------TPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSKKEGLIEKLYA 345 (460)
T ss_pred ccccccCCchhhhhhhhcccc--------------ccccccccCceeecCCCeEEEEEecceEEeCcchhhhhhhhhhh
Confidence 999999999999999998642 35789999999999999999999999999999988887777663
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-41 Score=366.96 Aligned_cols=336 Identities=17% Similarity=0.200 Sum_probs=260.8
Q ss_pred cceeeEEEEEe--CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
++..+-.+++. ..+|.. ++|.|+|+||+.|.....+ -.+| ..+|+|++++|||+.||
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH-~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-------------------CKGH-KNWVLCVAWSPDGKKIA 173 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee-------------------ecCC-ccEEEEEEECCCcchhh
Confidence 33344344444 334554 5899999999998765542 2356 88999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC-----Cc-EEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-----GD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-----G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
||+.||+|++||..+|.+ ....|.||+.+|++++|-|- .+ |+|+|.||+|||||+..+.+.
T Consensus 174 SG~~dg~I~lwdpktg~~-------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~------ 240 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQ-------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV------ 240 (480)
T ss_pred ccccCCeEEEecCCCCCc-------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE------
Confidence 999999999999987543 34578999999999999763 33 899999999999999876655
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEec
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDM 360 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~ 360 (1115)
..+.||+ ..|.|+..+.. ..++|++ |+|||+|++..|.+.++|++|++.+|.++.
T Consensus 241 -------------~~lsgHT----------~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 241 -------------RTLSGHT----------ASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred -------------EEeccCc----------cceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 2345676 67889888754 5677776 899999999999999999999999998887
Q ss_pred cCCCCc---cccccce-EEEEecCCCCccc-ee-eeeeccccceEEeccC-cEEEEecc------cccccCCCceEEEEE
Q 001245 361 SLLPDF---AMEDEFK-TKIVTSSKKDKAQ-SS-FGFFQRSRNAIMGAAD-AVRRVAAK------GGFGDDNRRTEALTT 427 (1115)
Q Consensus 361 s~~~~~---~~~~~~~-~~~~~~~~~~~~~-~~-v~f~~~~~~~~~Gs~d-~v~~~~~~------g~l~~h~~~V~aVa~ 427 (1115)
+..-.. ..+.... .+-.+..++ ++. +. ...-+.+..+++|++| .+.+|... ....+|..-|+.|.|
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~-~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f 375 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQK-KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF 375 (480)
T ss_pred cchhhhhccccccccccCCChHHHHH-HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence 753211 1111000 000000000 000 00 0111224578889887 57788763 246789999999999
Q ss_pred cCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEE
Q 001245 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI 502 (1115)
Q Consensus 428 S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~ 502 (1115)
|||++ |||||-|+.|||||. +|+.+.+|.||-.+|+.|+ .|.++|+|||.|.|+++||+. .++...|.||.+.|.
T Consensus 376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF 455 (480)
T ss_pred CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE
Confidence 99998 899999999999999 9999999999999999999 688999999999999999997 678899999999999
Q ss_pred EEE--ecCCEEEeecCCCceEEee
Q 001245 503 KMA--VGAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 503 sva--~dg~~laSgS~DgtIRlWd 524 (1115)
++. +||+.++||+.|+.+|+|.
T Consensus 456 ~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCceeecCCCceEEEeec
Confidence 997 6999999999999999995
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-37 Score=334.99 Aligned_cols=296 Identities=18% Similarity=0.258 Sum_probs=233.9
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| ..+|+|++|+|+|+.|||||.|.|+|+||+++.. +..+.+||...|.||+++|||+ |+||+.||+|++
T Consensus 113 GH-~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--------p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 113 GH-GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--------PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred CC-CCcEEEEEecCCCceEEecCCCceEEeeccCCCC--------cceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 55 7899999999999999999999999999999743 4678899999999999999998 899999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE-----eCCCCEEEeec-CCeEEEEEcC
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-----DHSRAKVWSAG-FLSFALWDAR 340 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las-----~~~~~~v~S~s-d~tI~lWD~~ 340 (1115)
||..++++.- -.|++|. ..+.+|+. .+..++++|++ |++|+|||+.
T Consensus 184 wdpktg~~~g------------------~~l~gH~----------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 184 WDPKTGQQIG------------------RALRGHK----------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred ecCCCCCccc------------------ccccCcc----------cceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 9999876541 2245554 23334443 34556777776 8999999999
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-----cc
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GG 414 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~ 414 (1115)
.|+++.++.+|...++++..-.. ..+.+|+.|. |+.|... ..
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~--------------------------------gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGE--------------------------------GLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred CceEEEEeccCccceEEEEEcCC--------------------------------ceEEecCCCceEEEEEccchhHHHh
Confidence 99999999999888766554321 1234555553 4445442 24
Q ss_pred cccCCCceEEEEEcCC-------------------------------------CcEEEEeCCCeEEEEcC--CCCeeEEe
Q 001245 415 FGDDNRRTEALTTSID-------------------------------------GMIWTGGANGLLLQWDP--NGNRLQDF 455 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~D-------------------------------------g~laSGS~DgtIklWD~--tG~~l~tl 455 (1115)
|.+|..+|+.++.|.| .+++|||.|.++-+|+. +-+++..+
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm 363 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM 363 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhh
Confidence 5667777777776611 14899999999999998 56799999
Q ss_pred ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCCC
Q 001245 456 QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 456 ~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
.||..-|+.+. |||++|||||.|..|||||-. |+.+.+|+||-+.|+.++. |.++|+|||.|.|+|+|++.+..
T Consensus 364 tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK- 442 (480)
T KOG0271|consen 364 TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK- 442 (480)
T ss_pred hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee-
Confidence 99999999988 899999999999999999975 9999999999999999995 78899999999999999998621
Q ss_pred CchhhHHHhhccccccceecccceEEEEEEeCCCC
Q 001245 531 LDSILCKELAGKEFLYTRMENLKILAGTWNVGQGR 565 (1115)
Q Consensus 531 ld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~ 565 (1115)
+...|-...+ -||+.-|-..|++
T Consensus 443 ----l~~DLpGh~D--------EVf~vDwspDG~r 465 (480)
T KOG0271|consen 443 ----LKQDLPGHAD--------EVFAVDWSPDGQR 465 (480)
T ss_pred ----ecccCCCCCc--------eEEEEEecCCCce
Confidence 2222333333 5788888776544
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=322.81 Aligned_cols=266 Identities=18% Similarity=0.213 Sum_probs=228.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--C-cEEEEeCCCcEEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--G-DLWSGSEGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G-~L~SgS~DgtIrvW 267 (1115)
+.||..+.|+.++..|||||-+|.+++|+.... ..+++|.||.+.|.++.|.|. + .|+|||.||+||+|
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeee
Confidence 889999999999999999999999999998862 457899999999999999997 3 38999999999999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
++++-..+ .++.+|. ..|..+++.|+|..|.+++ |.|-+|||++|+..+.
T Consensus 247 ~~~~e~~l-------------------~~l~gH~----------~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 247 KLSQETPL-------------------QDLEGHL----------ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ccCCCcch-------------------hhhhcch----------hhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 99764332 3345665 5677888999999999887 7899999999998775
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEE-ecc-c----ccccCCC
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV-AAK-G----GFGDDNR 420 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~-~~~-g----~l~~h~~ 420 (1115)
-..+|+.- +-.+.|.+++..+++|+-|.+-++ +.. | .|.+|..
T Consensus 298 ~QEGHs~~-------------------------------v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 298 LQEGHSKG-------------------------------VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred hhcccccc-------------------------------cceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 55555443 234577778888888888876554 442 3 3678999
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
.|.+|+|||+|+ |||||.|+++||||+ .-.++.++.+|++-|+.|. | .|.+|++++.|++++||... ++++++|
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL 426 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL 426 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence 999999999998 899999999999999 5578999999999999998 4 48999999999999999986 8999999
Q ss_pred ccccCCEEEEE--ecCCEEEeecCCCceEEee
Q 001245 495 VAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 495 ~gH~~~V~sva--~dg~~laSgS~DgtIRlWd 524 (1115)
.||.+.|.++. .|+++++|+|.|.|||+|.
T Consensus 427 aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999987 5899999999999999995
No 8
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.2e-33 Score=299.86 Aligned_cols=254 Identities=22% Similarity=0.318 Sum_probs=205.9
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~ 228 (1115)
.|+||++||..+..+.+. ..+| +++|+|+.++. ++|+|||.|.|||+||+++|
T Consensus 215 rDnTikiWD~n~~~c~~~-------------------L~GH-tGSVLCLqyd~--rviisGSSDsTvrvWDv~tg----- 267 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKI-------------------LTGH-TGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTG----- 267 (499)
T ss_pred ccCceEEeccccHHHHHh-------------------hhcC-CCcEEeeeccc--eEEEecCCCceEEEEeccCC-----
Confidence 799999999998888764 2367 99999999964 69999999999999999985
Q ss_pred CCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceee
Q 001245 229 DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (1115)
Q Consensus 229 ~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~ 308 (1115)
+++.++.+|..+|..+.|+. |.++|+|.|.+|+|||+...... + ..-.|+||.
T Consensus 268 ---e~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~i-t---------------~rrVLvGHr------- 320 (499)
T KOG0281|consen 268 ---EPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDI-T---------------LRRVLVGHR------- 320 (499)
T ss_pred ---chhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHH-H---------------HHHHHhhhh-------
Confidence 45678899999999999986 57899999999999999764311 0 011235665
Q ss_pred eecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccce
Q 001245 309 ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQS 387 (1115)
Q Consensus 309 ~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1115)
..|..+-++ ...+++++ |.|||+|+..|+++++++.+|..-
T Consensus 321 ---AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG--------------------------------- 362 (499)
T KOG0281|consen 321 ---AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG--------------------------------- 362 (499)
T ss_pred ---hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc---------------------------------
Confidence 334444443 34666664 789999999999999988654322
Q ss_pred eeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEE
Q 001245 388 SFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCL 465 (1115)
Q Consensus 388 ~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sl 465 (1115)
|.|+. ..|+ ++|||.|.||+|||+ .|.|++.++||..-|.||
T Consensus 363 ----------------------------------IAClQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 363 ----------------------------------IACLQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 406 (499)
T ss_pred ----------------------------------ceehh--ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhe
Confidence 11111 2234 689999999999999 899999999999999999
Q ss_pred EecCCEEEeeecccEEEEEeCC-C---------ccccccccccCCEEEEEecCCEEEeecCCCceEEeeecCCCC
Q 001245 466 CTFGSQIWVGYMNGIVQVLDLE-G---------NLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 466 a~dG~~LaSGs~DGtIrlWD~~-G---------~ll~~l~gH~~~V~sva~dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
.+|.++|+||..||+|+|||+. + -|+.++..|++.|..+.||...++|.++|.+|-+||+....|
T Consensus 407 RFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 407 RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred eecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 9999999999999999999964 2 167889999999999999999999999999999999975333
No 9
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.7e-32 Score=318.32 Aligned_cols=242 Identities=20% Similarity=0.360 Sum_probs=207.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC------------C-----------CCCCCcceEEeecCCCCEEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL------------D-----------SDDGFGEVLSWQAHRGPVLSL 247 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~------------~-----------~~~~~~~~~~l~GH~~~V~sV 247 (1115)
...|.|..|++|+++||-|-.|..|++|.+...++ + +........++.||.+||.+.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 45799999999999999999999999999874221 0 112223345689999999999
Q ss_pred EEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEE
Q 001245 248 CISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV 326 (1115)
Q Consensus 248 afSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v 326 (1115)
.|+|+.+ |+|+|+|+|||+|.+.|..+. +..+||. .+|.++.++|-|...
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~-------------------V~y~GH~----------~PVwdV~F~P~GyYF 508 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCL-------------------VIYKGHL----------APVWDVQFAPRGYYF 508 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeE-------------------EEecCCC----------cceeeEEecCCceEE
Confidence 9999988 899999999999999987655 2345676 678888899999999
Q ss_pred Eeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc
Q 001245 327 WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA 405 (1115)
Q Consensus 327 ~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~ 405 (1115)
+|++ |+|-+||.......+++
T Consensus 509 atas~D~tArLWs~d~~~PlRi---------------------------------------------------------- 530 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRI---------------------------------------------------------- 530 (707)
T ss_pred EecCCCceeeeeecccCCchhh----------------------------------------------------------
Confidence 9886 68999999654333332
Q ss_pred EEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEE
Q 001245 406 VRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (1115)
Q Consensus 406 v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtI 481 (1115)
|.+|...|.|+.|.|+.. +++||.|.|||+||+ +|..++.|.||.++|.+|+ |+|++||||+.||.|
T Consensus 531 ---------faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 531 ---------FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred ---------hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 556777888999999875 899999999999999 9999999999999999999 899999999999999
Q ss_pred EEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 482 rlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
++||+. |+++..+.+|++.|.+|.| ||..||+||.|++|++||+..+
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999997 7999999999999999985 8999999999999999998753
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.4e-31 Score=287.25 Aligned_cols=269 Identities=16% Similarity=0.174 Sum_probs=221.8
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
+.|.+|++||..||.+.+. -.+| +.+|..++|+..|++|||.|.|-.|++||.++-
T Consensus 127 s~d~tikv~D~~tg~~e~~-------------------LrGH-t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---- 182 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERS-------------------LRGH-TDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---- 182 (406)
T ss_pred cCCceEEEEEccchhhhhh-------------------hhcc-ccceeEEEEecCccEEEecCCccchhheeHHHH----
Confidence 4699999999999988653 1245 888999999999999999999999999999851
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecce
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~ 306 (1115)
+.++..+.||...|.+++|-|.|. ++|+|.|.|||.|+.+++.+..++ .+|.
T Consensus 183 ---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~-------------------~~h~----- 235 (406)
T KOG0295|consen 183 ---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF-------------------PGHS----- 235 (406)
T ss_pred ---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec-------------------cCch-----
Confidence 355677899999999999999997 899999999999999998876443 2333
Q ss_pred eeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCcc
Q 001245 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (1115)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1115)
.-|+.+....++..++|++ |+++++|-+.+++|...|..|.+++-++++.|....
T Consensus 236 -----ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~------------------- 291 (406)
T KOG0295|consen 236 -----EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSY------------------- 291 (406)
T ss_pred -----HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccC-------------------
Confidence 3566677777888888877 689999999999999999988888766665552111
Q ss_pred ceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEE
Q 001245 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ 463 (1115)
Q Consensus 386 ~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~ 463 (1115)
+.. .-+.|+. ..+ .+.+||.|++||+||+ +|.||-|+.||.++|.
T Consensus 292 -------~~i-~~at~~~-------------------------~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 292 -------PSI-SEATGST-------------------------NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred -------cch-hhccCCC-------------------------CCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 000 0000100 012 3789999999999999 9999999999999999
Q ss_pred EEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEec--CCEEEeecCCCceEEee
Q 001245 464 CLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 464 sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~d--g~~laSgS~DgtIRlWd 524 (1115)
.++ |-|+||+|...|+++++||++ ++|..+|.+|..-|+++.++ --+++|||-|.++++|.
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999 569999999999999999997 89999999999999999974 34899999999999996
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=8.9e-31 Score=304.16 Aligned_cols=364 Identities=18% Similarity=0.179 Sum_probs=263.9
Q ss_pred EEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC--CCEEEEEeC
Q 001245 137 TIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHR 211 (1115)
Q Consensus 137 ~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d--g~~LaSGS~ 211 (1115)
.++++ .+.|.| |.|+.++|||++.+++... | .+| .+.|.++.|.|+ -.+|++|..
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~-----------------f--kG~-gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS-----------------F--KGH-GGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCCEEEEE-----------------e--cCC-CceEEEEEeCCccchhheeecCC
Confidence 44555 445666 6899999999999988763 2 245 688999999987 346999999
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCc--------
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE-------- 282 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~-------- 282 (1115)
|+++|+||+.... .+..++++|...|++++|++|+. ++|+|.|+.|-|||+...++..++...+
T Consensus 170 D~~v~vwnl~~~~-------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l 242 (775)
T KOG0319|consen 170 DGTVRVWNLNDKR-------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRL 242 (775)
T ss_pred CceEEEEEcccCc-------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEe
Confidence 9999999998521 24678899999999999999997 8999999999999986543221110000
Q ss_pred ---------------------------------------------------ceeEEEEeeeeeeee------------cc
Q 001245 283 ---------------------------------------------------RHTAALIVERSYIDL------------RS 299 (1115)
Q Consensus 283 ---------------------------------------------------~~~~a~~~~~~~~~l------------~~ 299 (1115)
..+..+..|..++-+ ..
T Consensus 243 ~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ 322 (775)
T KOG0319|consen 243 REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY 322 (775)
T ss_pred chhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC
Confidence 000111111111100 00
Q ss_pred cceecce----------------------------ee---eecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc----
Q 001245 300 HLSVNGF----------------------------SS---ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE---- 343 (1115)
Q Consensus 300 h~~~~~~----------------------------~~---~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~---- 343 (1115)
|.-+..+ |+ ..+.-|.+|.....+..+++++ |+++++|-+..+.
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~ 402 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL 402 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh
Confidence 0000000 10 0112233444334556788877 7999999664333
Q ss_pred EEEEEecCCceeeEEeccCCCC---ccccccceEEEEecCC------------------CCccceeeeeeccccceEEec
Q 001245 344 LLKVFNIDGQIENRVDMSLLPD---FAMEDEFKTKIVTSSK------------------KDKAQSSFGFFQRSRNAIMGA 402 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~---~~~~~~~~~~~~~~~~------------------~~~~~~~v~f~~~~~~~~~Gs 402 (1115)
++....+|...+.+|+++.... ..+..+-.+++|.-.+ +++..++++..++.+.+++|+
T Consensus 403 ~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 403 CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc
Confidence 3444567777777888765332 2334445566765433 244557888899999999999
Q ss_pred cCc-EEEEecc-----cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEE
Q 001245 403 ADA-VRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI 472 (1115)
Q Consensus 403 ~d~-v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~L 472 (1115)
.|. .+.|+.. |.|.+|.+.|.+|.|++..+ +||+|.|+|||||.+ +..|++||.||+.+|.-.. .+|+.|
T Consensus 483 qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEE
Confidence 985 5666553 78899999999999999877 799999999999999 8999999999999999877 479999
Q ss_pred EeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 473 aSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+|+++||-|+||+++ +.|++++.+|.+.||+++. .+.+++||+.||.|-+|.=.+
T Consensus 563 iS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999999999997 8999999999999999984 567899999999999997433
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.8e-32 Score=292.62 Aligned_cols=230 Identities=19% Similarity=0.276 Sum_probs=188.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~ 270 (1115)
..+|.|+.+|. +.++||++|.||++||...- .+...|.||+|+|.|+.|..- -|+|||.|.||||||++
T Consensus 197 skgVYClQYDD--~kiVSGlrDnTikiWD~n~~--------~c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSL--------ECLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CCceEEEEecc--hhhhcccccCceEEeccccH--------HHHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEecc
Confidence 45799999965 57999999999999998863 346678999999999999752 26899999999999999
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
+++++.++ -+|. ..|..+.++. ..+++++ |.+|++||+..-.-+
T Consensus 266 tge~l~tl-------------------ihHc----------eaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i---- 310 (499)
T KOG0281|consen 266 TGEPLNTL-------------------IHHC----------EAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI---- 310 (499)
T ss_pred CCchhhHH-------------------hhhc----------ceeEEEEEeC--CEEEEecCCceeEEEeccCchHH----
Confidence 99876322 2232 3445555543 4455555 789999997421100
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
++ ...+.||...|+.|.|+.
T Consensus 311 -------------------------------------------------------t~-----rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 311 -------------------------------------------------------TL-----RRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred -------------------------------------------------------HH-----HHHHhhhhhheeeecccc
Confidence 00 122567777788887765
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEec
Q 001245 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG 507 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~d 507 (1115)
. .|+|+|.|.|||+|+. ++++++++.||...|-|+...|++++|||+|.|||+||++ |.|++.+.||.+-|.+|.||
T Consensus 331 k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred c-eEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 4 7899999999999999 8999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCEEEeecCCCceEEeeecC
Q 001245 508 AGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 508 g~~laSgS~DgtIRlWdl~~ 527 (1115)
.+.++||++||+||+||+..
T Consensus 410 ~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred CceeeeccccceEEEEeccc
Confidence 99999999999999999864
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=8.7e-30 Score=269.81 Aligned_cols=259 Identities=17% Similarity=0.224 Sum_probs=216.7
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
+.|+-+.|||.-|..-.. +.| +. +.||+++||+|.|+.||.|+-|...-++++.+...++
T Consensus 74 SqDGklIvWDs~TtnK~h---------------aip----l~-s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g 133 (343)
T KOG0286|consen 74 SQDGKLIVWDSFTTNKVH---------------AIP----LP-SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG 133 (343)
T ss_pred ccCCeEEEEEccccccee---------------EEe----cC-ceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence 789999999988765332 222 33 7799999999999999999999999999998632111
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceeccee
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~ 307 (1115)
..+..+.+.||++.+.+..|.+|++|++||-|.|.-+||+++++.... +.||.
T Consensus 134 --~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~-------------------f~GH~------ 186 (343)
T KOG0286|consen 134 --NVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQV-------------------FHGHT------ 186 (343)
T ss_pred --cceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEE-------------------ecCCc------
Confidence 123346789999999999999999999999999999999999876532 34566
Q ss_pred eeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCcc
Q 001245 308 SILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (1115)
Q Consensus 308 ~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1115)
++|.+|..+| +....+|++ |++.+|||++.+.+.++|.
T Consensus 187 ----gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~------------------------------------ 226 (343)
T KOG0286|consen 187 ----GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE------------------------------------ 226 (343)
T ss_pred ----ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec------------------------------------
Confidence 7888999888 777788876 8999999999998887763
Q ss_pred ceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC--CCc
Q 001245 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFA 461 (1115)
Q Consensus 386 ~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH--~~~ 461 (1115)
+|...|++|.|-|+|. ++|||.|+++|++|+ ..+.+..+... ..+
T Consensus 227 -------------------------------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 227 -------------------------------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred -------------------------------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 3445577788888888 899999999999999 77888877643 247
Q ss_pred EEEEEe--cCCEEEeeecccEEEEEeC-CCccccccccccCCEEEEE--ecCCEEEeecCCCceEEee
Q 001245 462 VQCLCT--FGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 462 V~sla~--dG~~LaSGs~DGtIrlWD~-~G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWd 524 (1115)
|++|++ .|++|.+|+.|.++.+||. .|+.+..|.||...|.+|. +||.-++|||+|.++|||.
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 899994 6999999999999999995 6999999999999999987 6999999999999999994
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.6e-30 Score=296.92 Aligned_cols=109 Identities=26% Similarity=0.409 Sum_probs=91.1
Q ss_pred EEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeE
Q 001245 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1115)
Q Consensus 137 ~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtI 215 (1115)
.|.+++..|+. +...-+|+|++.+|...+. .+ ..| .+||..++|+|.|.+||||+.||++
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irs-----------------wK-a~H-e~Pvi~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRS-----------------WK-AIH-EAPVITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHh-----------------Hh-hcc-CCCeEEEEEcCCCceEEeccccceE
Confidence 34455555665 5666899999999987763 12 246 8999999999999999999999999
Q ss_pred EEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc---EEEEeCCCcEEEEeCCCc
Q 001245 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 216 rlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~---L~SgS~DgtIrvWdl~t~ 272 (1115)
++||+..+. +...|+||.+.|.++.|.|+-. |+||+.|++||+||+.+.
T Consensus 130 ~VWdi~~~~--------~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~ 181 (775)
T KOG0319|consen 130 KVWDIKNGY--------CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK 181 (775)
T ss_pred EEEEeeCCE--------EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence 999998754 4789999999999999999863 689999999999999853
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.2e-30 Score=285.45 Aligned_cols=256 Identities=14% Similarity=0.133 Sum_probs=213.6
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC--CCEEEEEeCCCeEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMC 217 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d--g~~LaSGS~DgtIrl 217 (1115)
++.+++ +-+|.+|||+..++....+ ..+| ++.|.++.|.|. +..||||+.||+||+
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQT-------------------LRGH-TSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEE-------------------Eecc-ccceeeEEEccCCCccceeeeccCCceee
Confidence 555565 5799999999998865543 2367 889999999997 679999999999999
Q ss_pred EECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
|++++. .++..|+||...|..|+|.|+|+ |.|+|.|.|-|+||++|+...+.
T Consensus 246 w~~~~e--------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------- 298 (459)
T KOG0272|consen 246 WKLSQE--------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------- 298 (459)
T ss_pred eccCCC--------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh-------------------
Confidence 999863 34678999999999999999999 78999999999999999765432
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEE
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
.+||. ..|.++++.++|..+++++ |..-+|||++||.++-.|.+|...+-.
T Consensus 299 QEGHs----------~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~------------------ 350 (459)
T KOG0272|consen 299 QEGHS----------KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS------------------ 350 (459)
T ss_pred hcccc----------cccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceee------------------
Confidence 25565 5677889999999999988 567899999999999999877665443
Q ss_pred EEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-----cccccCCCceEEEEEcC-CCc-EEEEeCCCeEEEEcC
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP 447 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l~~h~~~V~aVa~S~-Dg~-laSGS~DgtIklWD~ 447 (1115)
+.|+|++..+++|+.|. ++.|+.. -+...|+.-|..|.|+| .|+ |+|+|.|++++||..
T Consensus 351 -------------V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 351 -------------VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -------------EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 35556666778887775 4555543 24567899999999998 465 899999999999999
Q ss_pred -CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 448 -NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 448 -tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
++.+++++.||.+.|.|+. +||+.|++++.|.|||+|.
T Consensus 418 ~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 8899999999999999998 8999999999999999995
No 16
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=285.15 Aligned_cols=361 Identities=16% Similarity=0.159 Sum_probs=256.5
Q ss_pred EEEeCC-eEEE-e-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCe
Q 001245 138 IVCTEE-QLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (1115)
Q Consensus 138 l~~~~~-~l~a-g-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dgt 214 (1115)
+..+++ -++| | +||.||+||+.++... +...+| ...|+|+.||..|.+|||||.|+.
T Consensus 71 l~~~~d~l~lAVGYaDGsVqif~~~s~~~~-------------------~tfngH-K~AVt~l~fd~~G~rlaSGskDt~ 130 (888)
T KOG0306|consen 71 LRSSDDILLLAVGYADGSVQIFSLESEEIL-------------------ITFNGH-KAAVTTLKFDKIGTRLASGSKDTD 130 (888)
T ss_pred eeccCCcceEEEEecCceEEeeccCCCcee-------------------eeeccc-ccceEEEEEcccCceEeecCCCcc
Confidence 333344 4444 6 8999999999866322 344577 899999999999999999999999
Q ss_pred EEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcc----------
Q 001245 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER---------- 283 (1115)
Q Consensus 215 IrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~---------- 283 (1115)
|.+||+-+.. ....++||.+.|+..-|..+.. |+|.|.|++||+||+++..|.-+.-.+..
T Consensus 131 IIvwDlV~E~--------Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~ 202 (888)
T KOG0306|consen 131 IIVWDLVGEE--------GLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEK 202 (888)
T ss_pred EEEEEeccce--------eeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecc
Confidence 9999987532 2567899999999999998545 78999999999999998543111000000
Q ss_pred -----------eeEEE--------------------------------Ee---ee-------------------------
Q 001245 284 -----------HTAAL--------------------------------IV---ER------------------------- 292 (1115)
Q Consensus 284 -----------~~~a~--------------------------------~~---~~------------------------- 292 (1115)
..+.+ .. +|
T Consensus 203 ~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~ 282 (888)
T KOG0306|consen 203 LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKI 282 (888)
T ss_pred eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHH
Confidence 00000 00 00
Q ss_pred -----------ee------------------------------eee--cccce-----ec--ce---e------------
Q 001245 293 -----------SY------------------------------IDL--RSHLS-----VN--GF---S------------ 307 (1115)
Q Consensus 293 -----------~~------------------------------~~l--~~h~~-----~~--~~---~------------ 307 (1115)
.. ++. .++.- .. .+ +
T Consensus 283 l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~ 362 (888)
T KOG0306|consen 283 LSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEAD 362 (888)
T ss_pred HHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccc
Confidence 00 000 00000 00 00 0
Q ss_pred -------eeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecC-----------Cce---------------
Q 001245 308 -------SILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID-----------GQI--------------- 354 (1115)
Q Consensus 308 -------~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~-----------~~~--------------- 354 (1115)
...-++|+.++++.+...++|++.+.|++|+..|.+|++++... ..+
T Consensus 363 ~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 363 RTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred ccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 01226788999998888889998899999999999999986321 111
Q ss_pred --------------eeEEeccCCCCc--cccccceEEEEe--------cCC-C------------Cccceeeeeeccccc
Q 001245 355 --------------ENRVDMSLLPDF--AMEDEFKTKIVT--------SSK-K------------DKAQSSFGFFQRSRN 397 (1115)
Q Consensus 355 --------------~~~v~~s~~~~~--~~~~~~~~~~~~--------~~~-~------------~~~~~~v~f~~~~~~ 397 (1115)
++.+..+|+... ....+..+++|+ +.+ + ....-++.++|+++.
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 111222222111 122334456653 111 1 111236778888888
Q ss_pred eEEeccCcEEEEecc------cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e
Q 001245 398 AIMGAADAVRRVAAK------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T 467 (1115)
Q Consensus 398 ~~~Gs~d~v~~~~~~------g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~ 467 (1115)
++++--|....+..- -.+-||.-+|.|+-+|||+. ++|||+|++||+|-+ =|.|-+.|.+|.++|.+|. |
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 888877654444321 35678999999999999998 689999999999999 5999999999999999998 7
Q ss_pred cCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE--ecCCEEEeecCCCceEEeeec
Q 001245 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~ 526 (1115)
....+++++.|+.|+-||.+ -++++.+.||...|++++ ++|++++|+|+|.+||+|.-+
T Consensus 603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 78899999999999999976 688999999999999988 589999999999999999854
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=254.28 Aligned_cols=257 Identities=17% Similarity=0.246 Sum_probs=204.1
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
|.|.|||+|-+.+|.|.++ .. |..+.|+.+.+.|+++.||.|+.- .||++|+.+++.
T Consensus 17 ~YDhTIRfWqa~tG~C~rT------------------iq--h~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np-- 73 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRT------------------IQ--HPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNP-- 73 (311)
T ss_pred cCcceeeeeehhcCeEEEE------------------Ee--cCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCC--
Confidence 7899999999999998874 11 214679999999999999988764 799999997542
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecce
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~ 306 (1115)
.++.++.||+..|++|.|--||+ ++|||+|||+||||+....+. |.| .|
T Consensus 74 ----~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----------------R~~----~~------ 123 (311)
T KOG0315|consen 74 ----NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----------------RNY----QH------ 123 (311)
T ss_pred ----CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----------------hhc----cC------
Confidence 36789999999999999999999 799999999999999774332 111 11
Q ss_pred eeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCcc
Q 001245 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (1115)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1115)
.++|.+++..+...-|+++. ++.|++||+.+..+.+.+-++
T Consensus 124 ----~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe---------------------------------- 165 (311)
T KOG0315|consen 124 ----NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE---------------------------------- 165 (311)
T ss_pred ----CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC----------------------------------
Confidence 25677888877777777765 578999998766554332110
Q ss_pred ceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CC------CeeEEeec
Q 001245 386 QSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG------NRLQDFQY 457 (1115)
Q Consensus 386 ~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG------~~l~tl~g 457 (1115)
....|.++++.+||. ++.+-.-|+..+|++ ++ +++..|+.
T Consensus 166 --------------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 166 --------------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred --------------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 112356677888987 566777899999998 43 45677889
Q ss_pred CCCcEEEEE--ecCCEEEeeecccEEEEEeCCC--ccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 458 LPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 458 H~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G--~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
|.+-++... ||+++||++|+|.+++||++++ ++-..+.||+.+|+.-+| ||+||+|||.|+++|+|++..
T Consensus 214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 998876544 8999999999999999999985 456788999999999775 899999999999999999875
No 18
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=2.4e-30 Score=274.39 Aligned_cols=187 Identities=26% Similarity=0.359 Sum_probs=133.6
Q ss_pred cccCcceEEEEEEEecEEEEEEeecccccchhH-----------HHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhh
Q 001245 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (1115)
Q Consensus 673 ~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~-----------~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~ 741 (1115)
.++.||.+.+|++++++.|||||+||.++..|+ ..|.++|..|+.+..
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--------------------- 122 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--------------------- 122 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh---------------------
Confidence 479999999999999999999999999998765 446777777776531
Q ss_pred cccCCCCCCCcccCCCCcCCcceEEEecccccccCCCChHHHHH-------HH------hhcChhHHhcchHHHHHHhc-
Q 001245 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD-------FI------SQRCFDWLRERDQLRAEMEA- 807 (1115)
Q Consensus 742 ~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~-------~i------~~~~~~~Ll~~DQL~~~~~~- 807 (1115)
..+..+|++|||||||||++...+.+-.+ .+ ....|.+|+++|||.+|++.
T Consensus 123 ---------------~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~f 187 (356)
T PTZ00312 123 ---------------AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRF 187 (356)
T ss_pred ---------------hccCCCCcEEEeccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhh
Confidence 12346899999999999999755533221 01 13569999999999999985
Q ss_pred ------------CCcccCccccCcccCCCcccccccc----------------------------------------CCc
Q 001245 808 ------------GNVFQGMREADIKFPPTYKFEKHLA----------------------------------------GLA 835 (1115)
Q Consensus 808 ------------~~~f~gf~E~~I~F~PTYKyd~~~~----------------------------------------g~~ 835 (1115)
.+.|.++.|+||+||||||-..... |+.
T Consensus 188 d~e~q~l~~~va~~s~~eLaE~pI~FpPTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~ 267 (356)
T PTZ00312 188 DLELQRLMDVVAQQSGVELAEFAIRFPPTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTA 267 (356)
T ss_pred hhhhhhhhhhhhhhcccchhcccccCCCcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCcc
Confidence 6778899999999999999332100 000
Q ss_pred c---------------cccCCccccccccceeeeecCCCcccccc--------------cCCCccccceeeeeecccccc
Q 001245 836 G---------------YDSGEKKRVPAWCDRILYRDSRSDLASEC--------------SLECPVASSILRYEACMDVTD 886 (1115)
Q Consensus 836 ~---------------yDts~k~R~PsWcDRIL~~~~~~~~~~~~--------------~~~~p~~~~~~~Y~s~~~~~~ 886 (1115)
. +-...+.|+|||||||||.....+.+... .-.+......+.|.| -++..
T Consensus 268 d~i~~~~~l~~~ta~P~r~~~~~r~pawcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s-~~L~h 346 (356)
T PTZ00312 268 DAILASVVLTRVTAIPHRNYCRDRLPAWCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRS-IDLIH 346 (356)
T ss_pred ceeeeeeeeecccccCCcchhcccchhhhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeee-eeeee
Confidence 0 00126899999999999987533221110 001111234567887 57999
Q ss_pred CCCCceeeEE
Q 001245 887 SDHKPVRCIF 896 (1115)
Q Consensus 887 SDHkPV~a~f 896 (1115)
+||.||...|
T Consensus 347 tDH~~V~~lF 356 (356)
T PTZ00312 347 TDHDGVFLLF 356 (356)
T ss_pred ccCccceecC
Confidence 9999999876
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=252.91 Aligned_cols=275 Identities=20% Similarity=0.230 Sum_probs=213.1
Q ss_pred eccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
+| .++|..++..+. -.+|.|+|+|.+|.+|++... +...+...+.|+||...|..++.++||+ .+|+|+|+++|
T Consensus 13 gh-~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d---d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 13 GH-TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD---DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred CC-CceEEEEEeecCCCceEEEcccceEEEEEEeccC---ccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 45 889999999876 789999999999999999763 2233455778999999999999999998 57999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
+||+++++.. ..+.+|. .+|.++++++++..++|++ |+||+|||+..+ |
T Consensus 89 lWDl~~g~~t-------------------~~f~GH~----------~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-c 138 (315)
T KOG0279|consen 89 LWDLATGEST-------------------RRFVGHT----------KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-C 138 (315)
T ss_pred EEEecCCcEE-------------------EEEEecC----------CceEEEEecCCCceeecCCCcceeeeeeeccc-E
Confidence 9999998655 2346676 7899999999999999998 799999998654 4
Q ss_pred EEEEecC--CceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccc
Q 001245 345 LKVFNID--GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFG 416 (1115)
Q Consensus 345 l~tl~~~--~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~ 416 (1115)
.-+...+ ..++++|.|+|..+ .-.+++++.| .++.|+.. ..+.
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~-----------------------------~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNES-----------------------------NPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCC-----------------------------CcEEEEccCCceEEEEccCCcchhhccc
Confidence 4444333 45666666666421 1123445555 46666553 4678
Q ss_pred cCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEec-CCEEEeeecccEEEEEeCC-Ccccc
Q 001245 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLE-GNLLG 492 (1115)
Q Consensus 417 ~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~d-G~~LaSGs~DGtIrlWD~~-G~ll~ 492 (1115)
+|++.++++++||||. +++|+.||.+-|||+ .|++++++. |...|.++++. .++...+..+..|+|||++ +.++.
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhh
Confidence 9999999999999998 589999999999999 899999985 67899999965 3444455555569999997 56655
Q ss_pred ccc----cc---cCCEEE--EEe--cCCEEEeecCCCceEEeeec
Q 001245 493 GWV----AH---SSPVIK--MAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 493 ~l~----gH---~~~V~s--va~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
+++ |- .+.+.| +++ ||+.|++|-.|+.||+|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 554 22 124444 453 79999999999999999875
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=265.64 Aligned_cols=235 Identities=20% Similarity=0.304 Sum_probs=199.5
Q ss_pred eeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 187 SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 187 s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
++| .+||.|++++|.+++++|||.|+||++||+++| +...++.||-..|..|+||+--- |+|++.|+.||
T Consensus 148 ~gH-lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGH-LGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhc-cceEEEEeeCCCceeEEecCCCceeEEEEcccC--------eEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 366 899999999999999999999999999999985 34678999999999999998643 89999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
.||++..+.+ |. ..||- +.|.||..-|.-+.|++++ |.++||||++|...
T Consensus 219 CwDLe~nkvI----------------R~---YhGHl----------S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 219 CWDLEYNKVI----------------RH---YHGHL----------SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred EEechhhhhH----------------HH---hcccc----------ceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence 9999876543 11 23444 5577888887778888876 78999999999888
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEE
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~a 424 (1115)
+.+|.+|... |..
T Consensus 270 V~~l~GH~~~-------------------------------------------------------------------V~~ 282 (460)
T KOG0285|consen 270 VHVLSGHTNP-------------------------------------------------------------------VAS 282 (460)
T ss_pred EEEecCCCCc-------------------------------------------------------------------cee
Confidence 8777655433 333
Q ss_pred EE-EcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccC
Q 001245 425 LT-TSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (1115)
Q Consensus 425 Va-~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~ 499 (1115)
|. -+.|++++|||.|++|++||+ .|+-.-++..|...|.+++ |.-..+||++.|. |+-|++- |..++.+.+|.+
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccc
Confidence 33 245778999999999999999 8999999999999999999 7788999999884 9999985 999999999999
Q ss_pred CEEEEEe-cCCEEEeecCCCceEEeeecC
Q 001245 500 PVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 500 ~V~sva~-dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.|++++. +..++++|+..|+|-.||..+
T Consensus 362 iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 362 IINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred eeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 9999996 567999999999999999875
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.9e-28 Score=286.51 Aligned_cols=241 Identities=20% Similarity=0.310 Sum_probs=193.3
Q ss_pred CCeEEE-e-CCCCEEEEeCCCCcccc--------ccc--ccccccCCCCCCCCCcee--eeccCCceEEEEEcCCCCEEE
Q 001245 142 EEQLWA-G-GENGLRVWNLKELYDES--------ESD--SVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 142 ~~~l~a-g-~D~tvrvWdl~tg~~~~--------~~~--~~~~~~~~~d~~~~~~~~--s~~G~~~V~~la~s~dg~~La 207 (1115)
++.++| | .|..|++|.+....... .++ +.....+..|+....... .+| .+||..+.|+|+.+.|+
T Consensus 389 dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH-~GPVyg~sFsPd~rfLl 467 (707)
T KOG0263|consen 389 DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH-SGPVYGCSFSPDRRFLL 467 (707)
T ss_pred CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC-CCceeeeeeccccccee
Confidence 455666 4 79999999998532111 110 001111333444433332 356 89999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
|+|.|++||+|++.+- ..+...+||..||+.|.|+|.|. +||||.|+|.|+|..+.....
T Consensus 468 ScSED~svRLWsl~t~--------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl----------- 528 (707)
T KOG0263|consen 468 SCSEDSSVRLWSLDTW--------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL----------- 528 (707)
T ss_pred eccCCcceeeeecccc--------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch-----------
Confidence 9999999999999973 33566799999999999999997 799999999999998764332
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
|.+ -+|- ++|.|+.+.|+...+++++ |+|+|+||+.+|..++.|
T Consensus 529 -----Rif---aghl----------sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF----------------- 573 (707)
T KOG0263|consen 529 -----RIF---AGHL----------SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF----------------- 573 (707)
T ss_pred -----hhh---cccc----------cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-----------------
Confidence 211 2344 7899999999999999986 689999999998877665
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIkl 444 (1115)
.||.+.|.+|++||+|+ |+||++||.|++
T Consensus 574 --------------------------------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 574 --------------------------------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred --------------------------------------------------cCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 34666788999999998 899999999999
Q ss_pred EcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 445 WDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 445 WD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
||+ +|+++.++.+|++.|++|. .||..||||+.|.+|++||+.
T Consensus 604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 999 8999999999999999998 689999999999999999964
No 22
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.6e-28 Score=289.80 Aligned_cols=268 Identities=20% Similarity=0.275 Sum_probs=221.8
Q ss_pred eCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 141 ~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
+.+.+.+ +.|++|++||..+++...+ ...+| .+.|.++++...+.+|+|||.|.|+|+||
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH-~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYLILT------------------RLVGH-FGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred ecCeEEecCCCceeEEeecccceEEEe------------------eccCC-CCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 3555555 4678999999999987763 12256 88999999998889999999999999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~ 299 (1115)
..+|. +..++.||.+.|.+|.+-+. .++|||.|.|||||+++++.+... +++
T Consensus 278 ~~sg~--------C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l-------------------~~~ 329 (537)
T KOG0274|consen 278 CSTGE--------CTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNL-------------------LRG 329 (537)
T ss_pred cCCCc--------EEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEE-------------------ecc
Confidence 98864 47899999999999988763 378999999999999998766521 244
Q ss_pred cceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEe
Q 001245 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1115)
Q Consensus 300 h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~ 378 (1115)
|. ..|+++..+ +..+++++ |++|++||++++++++++++|
T Consensus 330 h~----------~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--------------------------- 370 (537)
T KOG0274|consen 330 HT----------GPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH--------------------------- 370 (537)
T ss_pred cc----------ccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC---------------------------
Confidence 55 678888776 55666665 789999999999999887543
Q ss_pred cCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CC-CeeEEee
Q 001245 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG-NRLQDFQ 456 (1115)
Q Consensus 379 ~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG-~~l~tl~ 456 (1115)
+.+|.++++.....+++|+.|++||+||+ ++ +|++++.
T Consensus 371 ----------------------------------------~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 371 ----------------------------------------TGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred ----------------------------------------cceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhc
Confidence 34455555555456899999999999999 67 7999999
Q ss_pred cCCCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccccccc-ccCCEEEEEecCCEEEeecCCCceEEeeecCCCCCchh
Q 001245 457 YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSI 534 (1115)
Q Consensus 457 gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g-H~~~V~sva~dg~~laSgS~DgtIRlWdl~~p~pld~~ 534 (1115)
+|..-|.++...+++|.+++.||+|++||.+ ++++.++.+ |.+.|.+++.....+++++.|+++++||+.+..+...+
T Consensus 411 ~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 411 GHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred CCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999999999999999999999986 999999999 78999999887678999999999999999875554433
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.4e-27 Score=282.07 Aligned_cols=263 Identities=23% Similarity=0.336 Sum_probs=215.6
Q ss_pred CCeEEE--eCCCCEEEEeCCCCc--ccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELY--DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~--~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrl 217 (1115)
+++.++ +.|+.+++|++.++. ..+. ...| ...|.+++|+|+|++|+||+.|++||+
T Consensus 170 ~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h-~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 170 DGRALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGH-TRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred CCCeEEEccCCCcEEEeecccccchhhcc-------------------cccc-ccceeeeEECCCCcEEEEecCCceEEE
Confidence 444444 589999999997666 3332 1246 788999999999999999999999999
Q ss_pred EECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
||+... .....+++||...|++++|+|+|+ ++|||.|++|||||+.++++.. .
T Consensus 230 wd~~~~-------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-------------------~ 283 (456)
T KOG0266|consen 230 WDLKDD-------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-------------------K 283 (456)
T ss_pred eeccCC-------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-------------------e
Confidence 999431 245788999999999999999997 6899999999999999876652 2
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE--EEEEecCCceeeEEeccCCCCccccccce
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l--l~tl~~~~~~~~~v~~s~~~~~~~~~~~~ 373 (1115)
+.+|. +.+..+++++++..+++++ |+.|+|||+.++.. ++++..+.
T Consensus 284 l~~hs----------~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--------------------- 332 (456)
T KOG0266|consen 284 LKGHS----------DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE--------------------- 332 (456)
T ss_pred eeccC----------CceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC---------------------
Confidence 34565 6788899999999999887 78999999999884 33331110
Q ss_pred EEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCe
Q 001245 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR 451 (1115)
Q Consensus 374 ~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~ 451 (1115)
... .+..+.|+|++. +++++.|+++++||+ .+.+
T Consensus 333 -------------------------------------------~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 333 -------------------------------------------NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred -------------------------------------------CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 011 467788999998 899999999999999 7999
Q ss_pred eEEeecCCCcEEEEE-----ecCCEEEeeecccEEEEEeCC-Cccccccccc-cCCEEEEEe--cCCEEEeec--CCCce
Q 001245 452 LQDFQYLPFAVQCLC-----TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAV--GAGYIFTLA--NHGGI 520 (1115)
Q Consensus 452 l~tl~gH~~~V~sla-----~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH-~~~V~sva~--dg~~laSgS--~DgtI 520 (1115)
++++.+|...++|+. +.|+++++|+.|+.|++||.. +..+..+.+| ...|..++. ...++++++ .|+.|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceE
Confidence 999999998776664 479999999999999999997 8889999999 788888774 678899888 79999
Q ss_pred EEeee
Q 001245 521 RGWNV 525 (1115)
Q Consensus 521 RlWdl 525 (1115)
++|..
T Consensus 449 ~~w~~ 453 (456)
T KOG0266|consen 449 RLWKY 453 (456)
T ss_pred EEecC
Confidence 99974
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.8e-28 Score=266.14 Aligned_cols=233 Identities=20% Similarity=0.290 Sum_probs=198.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
..+|..+-|-|+--++|+++.|++|++||..++.+ ...|+||+++|.+|+|+..|+ |+|+|.|=.|++||.
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhh--------hhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 77899999999999999999999999999998543 567899999999999999998 789999999999999
Q ss_pred CC-cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEE
Q 001245 270 EA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1115)
Q Consensus 270 ~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~t 347 (1115)
++ ..|+.. +.+|. --|.++++-|.+..|.|++ |.+|+.||..||.++++
T Consensus 180 ~~~~~c~ks-------------------~~gh~----------h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 180 DTFFRCIKS-------------------LIGHE----------HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred HHHHHHHHH-------------------hcCcc----------cceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence 87 333211 12333 2355666777778888887 78999999999999998
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~ 427 (1115)
|.+|.+ .|..+..
T Consensus 231 ~~~h~e-------------------------------------------------------------------wvr~v~v 243 (406)
T KOG0295|consen 231 FPGHSE-------------------------------------------------------------------WVRMVRV 243 (406)
T ss_pred ccCchH-------------------------------------------------------------------hEEEEEe
Confidence 865443 3445667
Q ss_pred cCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e----------c-----CCEEEeeecccEEEEEeCC-
Q 001245 428 SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T----------F-----GSQIWVGYMNGIVQVLDLE- 487 (1115)
Q Consensus 428 S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~----------d-----G~~LaSGs~DGtIrlWD~~- 487 (1115)
+.||+ +||+|.|.+|++|-+ +++|...+..|..+|-|++ | . |.++.+|+.|++||+||+.
T Consensus 244 ~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 244 NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 78888 589999999999999 8999999999999999987 1 1 3699999999999999997
Q ss_pred CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 488 GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 488 G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
|.|+-++.||..+|..+++ .|+||+|++.|+|+|+||+..
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 9999999999999999996 599999999999999999875
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.8e-26 Score=258.24 Aligned_cols=352 Identities=14% Similarity=0.177 Sum_probs=259.4
Q ss_pred cccceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 129 TQIGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 129 ~~~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
..+..|++.+..+ ++.++| |+|+.|-++|=.+|..+..+ +| ...| .+.|.+|+++||++.
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l---------~~-------~~aH-kGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL---------ED-------SDAH-KGSIFALSWSPDSTQ 249 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe---------cC-------CCCc-cccEEEEEECCCCce
Confidence 4467799888887 667776 79999999998888766531 11 1145 789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCC-----C------------------------------CCCCcceEEeecCCCCEEEEEEe
Q 001245 206 VWSGHRDGRIMCWKMNARLLD-----S------------------------------DDGFGEVLSWQAHRGPVLSLCIS 250 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~-----~------------------------------~~~~~~~~~l~GH~~~V~sVafS 250 (1115)
++|.|.|.++|+||+.++.+- + ........++.||..+|++++.+
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~ 329 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS 329 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc
Confidence 999999999999999876641 0 01112234678999999999999
Q ss_pred CCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee
Q 001245 251 SYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA 329 (1115)
Q Consensus 251 pdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~ 329 (1115)
|||+ |+|||.||.|.-|+..++..-. +.-++|. ..++.++....+..+.++
T Consensus 330 ~d~~~i~SgsyDG~I~~W~~~~g~~~~------------------~~g~~h~----------nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 330 PDGKTIYSGSYDGHINSWDSGSGTSDR------------------LAGKGHT----------NQIKGMAASESGELFTIG 381 (603)
T ss_pred CCCCEEEeeccCceEEEEecCCccccc------------------ccccccc----------ceEEEEeecCCCcEEEEe
Confidence 9998 8999999999999998865420 0113344 667788777656655555
Q ss_pred cCCeEEEEEcCCccEEEE--EecCCceeeEEeccCCCCc-cccccceEEEEecCCC------CccceeeeeeccccceEE
Q 001245 330 GFLSFALWDARTRELLKV--FNIDGQIENRVDMSLLPDF-AMEDEFKTKIVTSSKK------DKAQSSFGFFQRSRNAIM 400 (1115)
Q Consensus 330 sd~tI~lWD~~tg~ll~t--l~~~~~~~~~v~~s~~~~~-~~~~~~~~~~~~~~~~------~~~~~~v~f~~~~~~~~~ 400 (1115)
-|.++++-++..+..-+. +....|+. .++....... .+.....+.++...++ ......+++++++..+++
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 588999998865543322 23333432 2222222111 1111112233332222 222357888999999999
Q ss_pred eccCcEEEEec-c-------cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCe-eEEeecCCCcEEEEE--e
Q 001245 401 GAADAVRRVAA-K-------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQCLC--T 467 (1115)
Q Consensus 401 Gs~d~v~~~~~-~-------g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~-l~tl~gH~~~V~sla--~ 467 (1115)
|.+|+-..+.. . ..+..|...+.+|++|||+. ||+|...+.|.+||+ +.+. ...+.-|+..|+||+ |
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 99987665544 1 35567899999999999998 789999999999999 4443 334556999999999 8
Q ss_pred cCCEEEeeecccEEEEEeCC--CccccccccccCCEEEEEe-cCCEEEeecCCCceEEeeec
Q 001245 468 FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~sva~-dg~~laSgS~DgtIRlWdl~ 526 (1115)
+.+++|+||.|-+|.||+++ .+.+....+|...|+.|++ |...++|.+.|..||+|++.
T Consensus 541 ~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 541 NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence 99999999999999999987 5667888899999999985 89999999999999999974
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=4.8e-27 Score=261.82 Aligned_cols=292 Identities=18% Similarity=0.257 Sum_probs=210.6
Q ss_pred EEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc---CCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 145 LWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG---VSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 145 l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G---~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
++| +.|.+.|+|++........ ... +=..++.+.++. ..-|+||+++.+|..||+|+.||.+|+|+
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~----~q~-----~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~ 263 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGS----TQL-----VLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWN 263 (524)
T ss_pred hhhccCCccceeeeeehhhccccc----hhh-----hhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEe
Confidence 555 4678999999985221110 000 000112221221 35699999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeec
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~ 298 (1115)
..+ ..+.+|--|++||.+|.++..|. |+|++.|||+-+||..+++....+..
T Consensus 264 ~~G---------~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~------------------ 316 (524)
T KOG0273|consen 264 KDG---------NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF------------------ 316 (524)
T ss_pred cCc---------hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee------------------
Confidence 987 34667888999999999999997 89999999999999987765432211
Q ss_pred ccceecceeeeecCCeEEEEEeCCCCEEEe-ecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEE
Q 001245 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (1115)
Q Consensus 299 ~h~~~~~~~~~~s~~v~~las~~~~~~v~S-~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~ 377 (1115)
|. .+.-+|-.. . ...+++ ..++.|+|+-+.-...
T Consensus 317 -~s-------~~~lDVdW~---~-~~~F~ts~td~~i~V~kv~~~~P--------------------------------- 351 (524)
T KOG0273|consen 317 -HS-------APALDVDWQ---S-NDEFATSSTDGCIHVCKVGEDRP--------------------------------- 351 (524)
T ss_pred -cc-------CCccceEEe---c-CceEeecCCCceEEEEEecCCCc---------------------------------
Confidence 11 000111111 1 112222 2234444444321111
Q ss_pred ecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEe
Q 001245 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF 455 (1115)
Q Consensus 378 ~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl 455 (1115)
..+|.+|.++|.++.+.|.|. |+|+|.|+|+|||.. .+.+...|
T Consensus 352 ----------------------------------~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l 397 (524)
T KOG0273|consen 352 ----------------------------------VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL 397 (524)
T ss_pred ----------------------------------ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence 134677889999999999998 689999999999998 89999999
Q ss_pred ecCCCcEEEEE--e---------cCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceE
Q 001245 456 QYLPFAVQCLC--T---------FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIR 521 (1115)
Q Consensus 456 ~gH~~~V~sla--~---------dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIR 521 (1115)
.+|+..|+.+. | .|.+|++++.|++|++||+. |.++.+|..|+.+|++|++ +|+|+|||+.||.|.
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 99999998887 3 36799999999999999987 9999999999999999996 699999999999999
Q ss_pred EeeecCCCCCchhhHHHhhccccccceecccceEEEEEEeCCCC
Q 001245 522 GWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGR 565 (1115)
Q Consensus 522 lWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~ 565 (1115)
+|+..+..- + ..|. .+=-||-.-||.++.+
T Consensus 478 iws~~~~~l----~--------~s~~--~~~~Ifel~Wn~~G~k 507 (524)
T KOG0273|consen 478 IWSTKTGKL----V--------KSYQ--GTGGIFELCWNAAGDK 507 (524)
T ss_pred eccccchhe----e--------Eeec--CCCeEEEEEEcCCCCE
Confidence 999765211 1 1111 1223899999998744
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=249.70 Aligned_cols=272 Identities=15% Similarity=0.259 Sum_probs=215.7
Q ss_pred ccceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE
Q 001245 130 QIGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 130 ~~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L 206 (1115)
.+--++|.++.+ .++.++ +.|+|+++||+++|....+ -.+| ...|..|++|+---+|
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt-------------------ltGh-i~~vr~vavS~rHpYl 208 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT-------------------LTGH-IETVRGVAVSKRHPYL 208 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe-------------------ecch-hheeeeeeecccCceE
Confidence 355678888887 567777 5899999999999987753 2245 7788999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+|++.|+.||.||++.. +.++...||-..|.|+++.|.-+ |+|||.|.++||||+.|....
T Consensus 209 Fs~gedk~VKCwDLe~n--------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V---------- 270 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYN--------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV---------- 270 (460)
T ss_pred EEecCCCeeEEEechhh--------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE----------
Confidence 99999999999999963 34667899999999999999766 799999999999999885433
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
..+.||. .+|..+.+.+.+..|++++ |.||++||++.|+-..++.
T Consensus 271 ---------~~l~GH~----------~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt--------------- 316 (460)
T KOG0285|consen 271 ---------HVLSGHT----------NPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT--------------- 316 (460)
T ss_pred ---------EEecCCC----------CcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee---------------
Confidence 2356676 5677777777667788876 7899999999887665542
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEE
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIk 443 (1115)
.|...|.+++..|.-. +||+|.| .|+
T Consensus 317 ----------------------------------------------------~hkksvral~lhP~e~~fASas~d-nik 343 (460)
T KOG0285|consen 317 ----------------------------------------------------HHKKSVRALCLHPKENLFASASPD-NIK 343 (460)
T ss_pred ----------------------------------------------------cccceeeEEecCCchhhhhccCCc-cce
Confidence 2334566777777765 6888888 599
Q ss_pred EEcC-CCCeeEEeecCCCcEEEEE-ecCCEEEeeecccEEEEEeCC-Ccccccc---c--c---ccCCEEEEEec--CCE
Q 001245 444 QWDP-NGNRLQDFQYLPFAVQCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGW---V--A---HSSPVIKMAVG--AGY 510 (1115)
Q Consensus 444 lWD~-tG~~l~tl~gH~~~V~sla-~dG~~LaSGs~DGtIrlWD~~-G~ll~~l---~--g---H~~~V~sva~d--g~~ 510 (1115)
.|++ .|..++.+.+|..-|++++ .+..++++|+..|.|..||-+ |-..+.. . | -...|.+-.+| |..
T Consensus 344 ~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~r 423 (460)
T KOG0285|consen 344 QWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSR 423 (460)
T ss_pred eccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCce
Confidence 9999 9999999999999999999 467899999999999999976 5322222 1 1 12356666664 789
Q ss_pred EEeecCCCceEEeeec
Q 001245 511 IFTLANHGGIRGWNVT 526 (1115)
Q Consensus 511 laSgS~DgtIRlWdl~ 526 (1115)
|+||..|++|++|.-.
T Consensus 424 lit~eadKtIk~~keD 439 (460)
T KOG0285|consen 424 LITGEADKTIKMYKED 439 (460)
T ss_pred EEeccCCcceEEEecc
Confidence 9999999999999753
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-26 Score=243.04 Aligned_cols=233 Identities=16% Similarity=0.227 Sum_probs=178.6
Q ss_pred cccceeeEEEEEe-CCeEE-E-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 129 TQIGCFLRTIVCT-EEQLW-A-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 129 ~~~~~~l~~l~~~-~~~l~-a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
+.+..++..+++. ++++. + +.|+++|+||+++|...+. ..+| +.-|+|++|++|++.
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~-------------------f~GH-~~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR-------------------FVGH-TKDVLSVAFSTDNRQ 119 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE-------------------EEec-CCceEEEEecCCCce
Confidence 3456666666666 44333 2 6899999999999866552 2367 889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC--CCCEEEEEEeCCC-c--EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYG-D--LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH--~~~V~sVafSpdG-~--L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
|+|||.|.||++|+.-+ .+..+...+ ++.|+||.|+|+. . |+|+|+|+|||+||+++.+....
T Consensus 120 ivSGSrDkTiklwnt~g---------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~--- 187 (315)
T KOG0279|consen 120 IVSGSRDKTIKLWNTLG---------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT--- 187 (315)
T ss_pred eecCCCcceeeeeeecc---------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc---
Confidence 99999999999999876 344555443 8999999999985 2 78999999999999988654311
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEe
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~ 359 (1115)
+-||. +.+..++++++|.+.++++ |+.+.|||++.++.+.+|.
T Consensus 188 ----------------~~gh~----------~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---------- 231 (315)
T KOG0279|consen 188 ----------------FIGHS----------GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---------- 231 (315)
T ss_pred ----------------ccccc----------ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----------
Confidence 22344 6678889999999999987 7889999999998876652
Q ss_pred ccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCC
Q 001245 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (1115)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~D 439 (1115)
+...|.+++|+|+...+.+..+
T Consensus 232 ----------------------------------------------------------a~~~v~sl~fspnrywL~~at~ 253 (315)
T KOG0279|consen 232 ----------------------------------------------------------AFDIVNSLCFSPNRYWLCAATA 253 (315)
T ss_pred ----------------------------------------------------------CCCeEeeEEecCCceeEeeccC
Confidence 2235678889998885555566
Q ss_pred CeEEEEcC-CCCeeEEeec----C---CCcEEEE--E--ecCCEEEeeecccEEEEEeCC
Q 001245 440 GLLLQWDP-NGNRLQDFQY----L---PFAVQCL--C--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 440 gtIklWD~-tG~~l~tl~g----H---~~~V~sl--a--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
..|||||+ ++.++.++.- - ...+.|+ | .||+.|++|+.|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 67999999 6777766542 1 1234444 4 589999999999999999863
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=274.97 Aligned_cols=236 Identities=21% Similarity=0.326 Sum_probs=201.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
...|.|+.|+++|+.+++++.|++|++|++.+... ...+.+.||...|++++|+|+|+ |+||+.|++|||||+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 56899999999999999999999999999965220 24556789999999999999997 799999999999999
Q ss_pred CC-cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEE
Q 001245 270 EA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1115)
Q Consensus 270 ~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~t 347 (1115)
.. +.+. ..+++|. ..+.++++.+.+..++|++ |++|+|||+++|+++++
T Consensus 233 ~~~~~~~-------------------~~l~gH~----------~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 233 KDDGRNL-------------------KTLKGHS----------TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred cCCCeEE-------------------EEecCCC----------CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 43 3322 2346776 7789999999999999987 68999999999998877
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~ 427 (1115)
|.+ |...|.+++|
T Consensus 284 l~~-------------------------------------------------------------------hs~~is~~~f 296 (456)
T KOG0266|consen 284 LKG-------------------------------------------------------------------HSDGISGLAF 296 (456)
T ss_pred eec-------------------------------------------------------------------cCCceEEEEE
Confidence 643 3445667888
Q ss_pred cCCCc-EEEEeCCCeEEEEcC-CCC--eeEEeecCCCc--EEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccccc
Q 001245 428 SIDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFA--VQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (1115)
Q Consensus 428 S~Dg~-laSGS~DgtIklWD~-tG~--~l~tl~gH~~~--V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~ 498 (1115)
++||. +++++.|++|++||+ +|. |+.++.++... |++++ ++|++|++++.|+++++||+. +.+...+.+|.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 88887 789999999999999 788 67888888776 88888 789999999999999999998 89999999999
Q ss_pred CCEEEEE-----ecCCEEEeecCCCceEEeeecCC
Q 001245 499 SPVIKMA-----VGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 499 ~~V~sva-----~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
..+.++. .+|.+++||+.|+.|++|++.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 9766653 37899999999999999998863
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=1.8e-26 Score=251.81 Aligned_cols=297 Identities=18% Similarity=0.234 Sum_probs=207.7
Q ss_pred CccccccceeeEEEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEE---c
Q 001245 125 PLRETQIGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG---D 200 (1115)
Q Consensus 125 ~l~~~~~~~~l~~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~---s 200 (1115)
|+....+.-++..+.....-++. +.||++|+||.+ |.+.. ...+| ++++.+++. +
T Consensus 98 pl~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Gh-t~~ik~v~~v~~n 156 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIK-------------------TIVGH-TGPIKSVAWVIKN 156 (423)
T ss_pred ccccccchhhhhhhcccCceEEEeecCCeeEEEecC-CceEE-------------------EEecC-CcceeeeEEEecC
Confidence 33334444455555555444555 589999999987 43332 23466 788875554 2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCccee-ec-
Q 001245 201 EASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA-LS- 277 (1115)
Q Consensus 201 ~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~-l~- 277 (1115)
+....++|||.|.|+++|..+.+. +..+..+.-+||.++|-+|...++|. ++|||.|.+|++|+.++-... +.
T Consensus 157 ~~~~~fvsas~Dqtl~Lw~~~~~~----~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~ 232 (423)
T KOG0313|consen 157 SSSCLFVSASMDQTLRLWKWNVGE----NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELES 232 (423)
T ss_pred CccceEEEecCCceEEEEEecCch----hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccc
Confidence 334579999999999999988633 22334445569999999999999997 789999999999994331110 00
Q ss_pred cCCCcc----eeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCC
Q 001245 278 LKPEER----HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (1115)
Q Consensus 278 ~~~~~~----~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~ 352 (1115)
.+...+ .......-...+.+.||. ..|..+..++ ...+.|++ |.||+.||+.+|.+..++...
T Consensus 233 ~s~~rrk~~~~~~~~~~r~P~vtl~GHt----------~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~- 300 (423)
T KOG0313|consen 233 SSNRRRKKQKREKEGGTRTPLVTLEGHT----------EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN- 300 (423)
T ss_pred cchhhhhhhhhhhcccccCceEEecccc----------cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-
Confidence 000000 000000001223455665 6777777776 55667776 789999999998876554211
Q ss_pred ceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc
Q 001245 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM 432 (1115)
Q Consensus 353 ~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~ 432 (1115)
....++..++...
T Consensus 301 -------------------------------------------------------------------ksl~~i~~~~~~~ 313 (423)
T KOG0313|consen 301 -------------------------------------------------------------------KSLNCISYSPLSK 313 (423)
T ss_pred -------------------------------------------------------------------cceeEeecccccc
Confidence 1223445555544
Q ss_pred -EEEEeCCCeEEEEcC-C--CC-eeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC-C-ccccccccccCCEE
Q 001245 433 -IWTGGANGLLLQWDP-N--GN-RLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVI 502 (1115)
Q Consensus 433 -laSGS~DgtIklWD~-t--G~-~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~-G-~ll~~l~gH~~~V~ 502 (1115)
||+||.|..|+|||. + |. ..++|.||.++|.++. | +-.+|+||+.|+++++||+. . ..+..+.+|.+.|.
T Consensus 314 Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL 393 (423)
T ss_pred eeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence 789999999999998 4 33 5688999999999998 4 46799999999999999986 3 48999999999999
Q ss_pred EEEe-cCCEEEeecCCCceEEeee
Q 001245 503 KMAV-GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 503 sva~-dg~~laSgS~DgtIRlWdl 525 (1115)
++.. .|.+|+|||.|++||+..-
T Consensus 394 ~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 394 SVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEeccCCceEEeccCcceEEEecc
Confidence 9996 6779999999999999763
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=3.7e-26 Score=243.29 Aligned_cols=266 Identities=19% Similarity=0.233 Sum_probs=209.8
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| .+.|+++.|+|+|.++|||+.|..|-+|++.+.. +-..+++||+++|..|.|++|+. |+|+|.|++|+.
T Consensus 45 gh-~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 45 GH-KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred CC-cceEEEEEECCCCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 55 8899999999999999999999999999987521 23456789999999999999998 899999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEeec-CCeEEEEEcCCccE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
||++++++... +++|... +..+.-..-+ ..|.|++ |+|+||||+++.++
T Consensus 117 wD~~tG~~~rk-------------------~k~h~~~----------vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~ 167 (338)
T KOG0265|consen 117 WDAETGKRIRK-------------------HKGHTSF----------VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA 167 (338)
T ss_pred Eecccceeeeh-------------------hccccce----------eeecCccccCCeEEEecCCCceEEEEeecccch
Confidence 99999987632 3445421 1222211112 3344555 58999999999999
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEec---c--cccccC
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA---K--GGFGDD 418 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~---~--g~l~~h 418 (1115)
++++...-+ ..+++|.+.+.++++|.-| .++.|+. + -.+.||
T Consensus 168 ~~t~~~kyq--------------------------------ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh 215 (338)
T KOG0265|consen 168 IKTFENKYQ--------------------------------LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH 215 (338)
T ss_pred hhcccccee--------------------------------EEEEEecccccceeeccccCceeeeccccCcceEEeecc
Confidence 988743222 2356777777777777655 5677766 2 356789
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcCC----C-CeeEEeecCCC--cEEEEE----ecCCEEEeeecccEEEEEeC
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPN----G-NRLQDFQYLPF--AVQCLC----TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~t----G-~~l~tl~gH~~--~V~sla----~dG~~LaSGs~DGtIrlWD~ 486 (1115)
...|..+..+++|. +.+-+.|.++++||+. + +|++.+.+|.. .++.|. |+++.+.+|+.|..+.+||.
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT 295 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence 99999999999997 7899999999999982 3 57999998754 344333 78999999999999999999
Q ss_pred CC-ccccccccccCCEEEEEecC--CEEEeecCCCceEE
Q 001245 487 EG-NLLGGWVAHSSPVIKMAVGA--GYIFTLANHGGIRG 522 (1115)
Q Consensus 487 ~G-~ll~~l~gH~~~V~sva~dg--~~laSgS~DgtIRl 522 (1115)
.+ +++..|.||.+.|++++|.+ ..|.|+|.|++|.+
T Consensus 296 ~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 296 TSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 85 78899999999999999754 58999999999976
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.7e-25 Score=260.13 Aligned_cols=239 Identities=16% Similarity=0.315 Sum_probs=186.2
Q ss_pred ceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC
Q 001245 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (1115)
Q Consensus 184 ~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg 262 (1115)
+...+| ...+.|++++|||++||||+.||+||+||...+. +..+|..|+..|+.+.|+..|+ |+|+|-||
T Consensus 344 lKQQgH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--------C~vTFteHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 344 LKQQGH-SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF--------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred eecccc-ccceeeEEECCCCcEEEeccCCCcEEEEeccCce--------EEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence 455577 8899999999999999999999999999998754 4789999999999999999998 79999999
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC--CeEEEEEcC
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDAR 340 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd--~tI~lWD~~ 340 (1115)
|||.||+....+-.+++..+ | ....|++.++.|..|..++- -.|.||++.
T Consensus 415 tVRAwDlkRYrNfRTft~P~---------------------------p-~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPE---------------------------P-IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred eEEeeeecccceeeeecCCC---------------------------c-eeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 99999997654432222111 0 23457888888887776653 359999999
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCC
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~ 420 (1115)
||+++.+|++ |.+
T Consensus 467 TGqllDiLsG-------------------------------------------------------------------HEg 479 (893)
T KOG0291|consen 467 TGQLLDILSG-------------------------------------------------------------------HEG 479 (893)
T ss_pred cCeeeehhcC-------------------------------------------------------------------CCC
Confidence 9999877654 444
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CC-CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG-~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
.|.+++|+|+|. |||||.|+|||+||+ .. ....++. +...|++++ |||+.||++..||.|.+||.+ +..+.+.
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 566678888887 799999999999999 43 2344443 567788888 899999999999999999964 3222111
Q ss_pred ----------------c----cccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 495 ----------------V----AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 495 ----------------~----gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
. +-....++|. +||..|++||..+.|.++++.+
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 1 1122444544 6999999999999999999865
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.9e-26 Score=251.63 Aligned_cols=283 Identities=17% Similarity=0.283 Sum_probs=210.7
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEE-eCCCc---EEEEeCCCc
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD---LWSGSEGGG 263 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVaf-SpdG~---L~SgS~Dgt 263 (1115)
.| -.+|.++... ++.|.||++||++|+||..+ +...+..||.++|.++++ .++.. ++|+|.|.|
T Consensus 103 ~h-dDWVSsv~~~--~~~IltgsYDg~~riWd~~G---------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt 170 (423)
T KOG0313|consen 103 LH-DDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT 170 (423)
T ss_pred cc-hhhhhhhccc--CceEEEeecCCeeEEEecCC---------ceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence 45 6788888776 78999999999999999996 567888999999997775 45443 799999999
Q ss_pred EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc
Q 001245 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg 342 (1115)
+++|.++.++..+.. ...-+||. ..|.++...+++.++.|++ |.+++||+..+
T Consensus 171 l~Lw~~~~~~~~~~~---------------~~~~~GHk----------~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~- 224 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKA---------------LKVCRGHK----------RSVDSVSVDSSGTRFCSGSWDTMLKIWSVET- 224 (423)
T ss_pred EEEEEecCchhhhhH---------------HhHhcccc----------cceeEEEecCCCCeEEeecccceeeecccCC-
Confidence 999999876543211 01113665 6788888889999999988 67899999322
Q ss_pred cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCce
Q 001245 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1115)
Q Consensus 343 ~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V 422 (1115)
+...++... ...++.+.. +-+ ..+.. .+.-.+.+|+..|
T Consensus 225 ~~~~~~E~~--------------------------s~~rrk~~~----~~~-----~~~~r------~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 225 DEEDELESS--------------------------SNRRRKKQK----REK-----EGGTR------TPLVTLEGHTEPV 263 (423)
T ss_pred Ccccccccc--------------------------chhhhhhhh----hhh-----ccccc------CceEEecccccce
Confidence 111111000 000000000 000 00000 0112478999999
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC---Cc-cccccc
Q 001245 423 EALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE---GN-LLGGWV 495 (1115)
Q Consensus 423 ~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~---G~-ll~~l~ 495 (1115)
.+|.+++.+.++|+|.|.|||.||+ +|.+..++.+ ..+.+|+. +...+||+|+.|..|||||.. |. ..++|.
T Consensus 264 s~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 264 SSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred eeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 9999999888999999999999999 8999888876 46788998 778999999999999999964 33 457899
Q ss_pred cccCCEEEEEe---cCCEEEeecCCCceEEeeecCCC-CCchhhHHHhhccccccceecccceEEEEEEeCC
Q 001245 496 AHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPG-PLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (1115)
Q Consensus 496 gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~~p~-pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~ 563 (1115)
||+++|.++.. +...++|||+|+++|+||++++. |+-.+... +=||+..+||=++
T Consensus 343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-------------~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-------------NDKVLSVDWNEGG 401 (423)
T ss_pred cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-------------CceEEEEeccCCc
Confidence 99999999985 45689999999999999999876 77555433 4499999999653
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=3.7e-24 Score=241.33 Aligned_cols=332 Identities=15% Similarity=0.135 Sum_probs=224.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee---cCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~---GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+.-|.|+.|+|||.++||.+.||+|.++|-.++ +.+..|. +|++.|.+|+++||++ ++|+|.|+|+||
T Consensus 190 skFV~~VRysPDG~~Fat~gsDgki~iyDGktg--------e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--------EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ccceeeEEECCCCCeEEEecCCccEEEEcCCCc--------cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 678999999999999999999999999997653 3355665 9999999999999997 999999999999
Q ss_pred EeCCCcceeeccCCCc-------------ceeEEEEeeeeeeee-cccceecceeeeecCCeEEEEEeCCCCEEEeec-C
Q 001245 267 WPWEAIEKALSLKPEE-------------RHTAALIVERSYIDL-RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F 331 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~-------------~~~~a~~~~~~~~~l-~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d 331 (1115)
||+.+.++..++.... .++..++.....--+ .++..+.-+-....-.+.+|..++++..+.|++ |
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 9999876544442221 122222211110000 011111111122335688999999999999998 6
Q ss_pred CeEEEEEcCCccEEEEE-ecCCceeeEEeccCCCCc-cccccceEEEEecCCCCccc-eeeeeeccccceEEeccCcEEE
Q 001245 332 LSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDF-AMEDEFKTKIVTSSKKDKAQ-SSFGFFQRSRNAIMGAADAVRR 408 (1115)
Q Consensus 332 ~tI~lWD~~tg~ll~tl-~~~~~~~~~v~~s~~~~~-~~~~~~~~~~~~~~~~~~~~-~~v~f~~~~~~~~~Gs~d~v~~ 408 (1115)
+.|.-||..+|..-+.+ .+|...+.+.+.+...+. ....+...+..+........ ..+.+-....-++...++.+..
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 89999999999876655 456666666666653332 22222233333221111110 0011111111223333333333
Q ss_pred Eecc---------c-ccc-cCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCCC-Ce--eEEeecCCCcEEEEE--ecCCE
Q 001245 409 VAAK---------G-GFG-DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNG-NR--LQDFQYLPFAVQCLC--TFGSQ 471 (1115)
Q Consensus 409 ~~~~---------g-~l~-~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~tG-~~--l~tl~gH~~~V~sla--~dG~~ 471 (1115)
+.+. + .+. .-.-.+.++|++||+. ++.|+.|+.|+++.++| ++ ...+..|.++|++|+ |||.+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 3221 1 111 1123567899999998 78999999999999966 32 234667999999999 89999
Q ss_pred EEeeecccEEEEEeCC-Cc-cccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCCC
Q 001245 472 IWVGYMNGIVQVLDLE-GN-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 472 LaSGs~DGtIrlWD~~-G~-ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
||+|...+.|-+||++ .+ ....|.=|++.|.+|++ +.+++||||-|.+|.||++..|..
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 9999999999999987 33 34567679999999995 778999999999999999987644
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=1.3e-24 Score=234.82 Aligned_cols=268 Identities=21% Similarity=0.322 Sum_probs=213.5
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.| .++|.|++++|++++|++|+.||.|++|++.++ +....+.+|...|.++.|+|+++ |++++.||+|++
T Consensus 7 ~h-~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 7 GH-TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred cc-CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 45 789999999999999999999999999999863 23567789999999999999996 889999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
|++.+++.... +..|. ..+.++.+.+++..+++++ ++.+++||+.+++.+
T Consensus 78 ~~~~~~~~~~~-------------------~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 128 (289)
T cd00200 78 WDLETGECVRT-------------------LTGHT----------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128 (289)
T ss_pred EEcCcccceEE-------------------EeccC----------CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE
Confidence 99987533211 11222 4567777877777888877 889999999998888
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEEEecc-----cccccCC
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAK-----GGFGDDN 419 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~-----g~l~~h~ 419 (1115)
..+..+...+..+.++ +.+..++.+. .+.+..|+.. ..+..|.
T Consensus 129 ~~~~~~~~~i~~~~~~-------------------------------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~ 177 (289)
T cd00200 129 TTLRGHTDWVNSVAFS-------------------------------PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177 (289)
T ss_pred EEeccCCCcEEEEEEc-------------------------------CcCCEEEEEcCCCcEEEEEccccccceeEecCc
Confidence 8776554433333333 3333444454 3445555542 2344566
Q ss_pred CceEEEEEcCCC-cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 420 RRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 420 ~~V~aVa~S~Dg-~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
..+.++++++++ .+++++.|+.|++||+ +++.+..+..|...|.+++ +++.++++++.||.|++||+. ++.+..+
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 789999999999 4888889999999999 6899999989999999998 567888888889999999987 7888889
Q ss_pred ccccCCEEEEEe--cCCEEEeecCCCceEEee
Q 001245 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 495 ~gH~~~V~sva~--dg~~laSgS~DgtIRlWd 524 (1115)
.+|...|.++++ +++++++++.|+.|++|+
T Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999986 558999999999999996
No 36
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=5.3e-26 Score=272.77 Aligned_cols=231 Identities=22% Similarity=0.349 Sum_probs=192.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEE-eecCCCCEEEEEEeCCC-cEEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~-l~GH~~~V~sVafSpdG-~L~SgS~DgtIrvWd 268 (1115)
...++|..+. .+.+++|+.|++|++||...+ ..+.+ +.||.+.|++++|..-+ .|+|||.|+|+||||
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 4578888887 568999999999999998863 34555 99999999999999733 489999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~t 347 (1115)
..+++|.-+ +.+|. +.+.++... ...+.+++ |.+|++|++.+|+++++
T Consensus 278 ~~sg~C~~~-------------------l~gh~----------stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 278 CSTGECTHS-------------------LQGHT----------SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred cCCCcEEEE-------------------ecCCC----------ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEE
Confidence 999988732 34554 344454433 34555544 78999999999999988
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~ 427 (1115)
+.+| ...|.+|..
T Consensus 327 ~~~h-------------------------------------------------------------------~~~V~~v~~ 339 (537)
T KOG0274|consen 327 LRGH-------------------------------------------------------------------TGPVNCVQL 339 (537)
T ss_pred eccc-------------------------------------------------------------------cccEEEEEe
Confidence 7543 234455555
Q ss_pred cCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecC-CEEEeeecccEEEEEeCC-C-ccccccccccCCEEE
Q 001245 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIK 503 (1115)
Q Consensus 428 S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG-~~LaSGs~DGtIrlWD~~-G-~ll~~l~gH~~~V~s 503 (1115)
. ++.+++|+.|++|++||+ +++|+.++.+|..+|+++..++ .++++|+.|++|++||++ . +|+.++.+|.+.|.+
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 5 456899999999999999 8999999999999999999999 999999999999999998 5 699999999999999
Q ss_pred EEecCCEEEeecCCCceEEeeecCCCC
Q 001245 504 MAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 504 va~dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
+.+.+++|+|++.|++||+||....+.
T Consensus 419 l~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 419 LLLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred cccccceeEeccccccEEEeecccCce
Confidence 999999999999999999999876443
No 37
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.1e-23 Score=245.14 Aligned_cols=359 Identities=16% Similarity=0.217 Sum_probs=258.1
Q ss_pred EEEe-CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCcee----eeccCCceEEEEEcCCCCEEEEEeC
Q 001245 138 IVCT-EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE----SVKGVSSVMCMVGDEASGVVWSGHR 211 (1115)
Q Consensus 138 l~~~-~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~----s~~G~~~V~~la~s~dg~~LaSGS~ 211 (1115)
+..+ ++.++| +-.+-+++|-...... ++-.||.. .+| ...|.++.|+.|+++|++||+
T Consensus 102 i~fSPng~~fav~~gn~lqiw~~P~~~~---------------~~~~pFvl~r~~~g~-fddi~si~Ws~DSr~l~~gsr 165 (893)
T KOG0291|consen 102 IKFSPNGKFFAVGCGNLLQIWHAPGEIK---------------NEFNPFVLHRTYLGH-FDDITSIDWSDDSRLLVTGSR 165 (893)
T ss_pred EEECCCCcEEEEEecceeEEEecCcchh---------------cccCcceEeeeecCC-ccceeEEEeccCCceEEeccc
Confidence 3444 667777 7788999997542211 13445543 234 778999999999999999999
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceee-------ccCC---
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL-------SLKP--- 280 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l-------~~~~--- 280 (1115)
|-++|+|+++.-. + -....+.||+++|-+.-|..+.. |++-|.||.|.+|.....-... ..+.
T Consensus 166 D~s~rl~~v~~~k----~--~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~ 239 (893)
T KOG0291|consen 166 DLSARLFGVDGNK----N--LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEE 239 (893)
T ss_pred cceEEEEEecccc----c--cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccc
Confidence 9999999998521 1 12456889999999999999886 9999999999999876310000 0000
Q ss_pred ----CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCcee
Q 001245 281 ----EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIE 355 (1115)
Q Consensus 281 ----~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~ 355 (1115)
.|..+... .+..++-|- +.-.+.++++.++.+....|+.+- .+.+.|+.+-.-.+++.++...+.+
T Consensus 240 ~~~~~Eek~~~~----~~~k~~k~~-----ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I 310 (893)
T KOG0291|consen 240 MDEDGEEKTHKI----FWYKTKKHY-----LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKI 310 (893)
T ss_pred ccccchhhhcce----EEEEEEeee-----ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccccee
Confidence 00000000 000000010 111125677777766666666653 5778899999999999998887777
Q ss_pred eEEeccCCCCcccccc-----ceEEEEecC-------CCCccceeeeeeccccceEEeccCc-EEEEecc-----ccccc
Q 001245 356 NRVDMSLLPDFAMEDE-----FKTKIVTSS-------KKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGFGD 417 (1115)
Q Consensus 356 ~~v~~s~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l~~ 417 (1115)
..+.+...++...-.. ..++-|.+- .+-....+++++++++.+++|++|+ |+.|+.. -+|..
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte 390 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE 390 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc
Confidence 7777776555422111 113334322 1122236889999999999998875 7778764 36789
Q ss_pred CCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCC-cEEEEEec--CCEEEeeeccc-EEEEEeCC-Ccc
Q 001245 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTF--GSQIWVGYMNG-IVQVLDLE-GNL 490 (1115)
Q Consensus 418 h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~-~V~sla~d--G~~LaSGs~DG-tIrlWD~~-G~l 490 (1115)
|+..|.++.|+..|. +++.|-|||||.||+ .+++-+||+.-.. .-.||+.| |..+..|+.|. .|.||+++ |++
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 999999999999998 789999999999999 8999999987422 34577744 99999998775 69999997 999
Q ss_pred ccccccccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 491 LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 491 l~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+..+.||.++|.++. ++|+.|+|||+|+|||+||+-.
T Consensus 471 lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 471 LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 999999999999876 5899999999999999999864
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2.8e-24 Score=274.04 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=202.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC-Cc-EEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~-L~SgS~DgtIrvWd 268 (1115)
.+.|.+++|+++|.+||||+.|++|++|++................+. |...|.+++|++. +. |+||+.||+|+|||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 678999999999999999999999999998642110000011223343 4568999999885 34 89999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
+.++.... .+.+|. ..|.++++.+ ++..+++++ |++|++||+++++++.
T Consensus 562 ~~~~~~~~-------------------~~~~H~----------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 562 VARSQLVT-------------------EMKEHE----------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCCCeEEE-------------------EecCCC----------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 98764431 123454 6788888875 567788776 6899999999999888
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeee-ccccceEEeccCc-EEEEecc------cccccC
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF-QRSRNAIMGAADA-VRRVAAK------GGFGDD 418 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~-~~~~~~~~Gs~d~-v~~~~~~------g~l~~h 418 (1115)
++..+..+ ..+ .|. +++..+++|+.|+ ++.|+.. ..+.+|
T Consensus 613 ~~~~~~~v-~~v-------------------------------~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h 660 (793)
T PLN00181 613 TIKTKANI-CCV-------------------------------QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH 660 (793)
T ss_pred EEecCCCe-EEE-------------------------------EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC
Confidence 87644322 222 222 2344566666654 5566542 134578
Q ss_pred CCceEEEEEcCCCcEEEEeCCCeEEEEcC-C------CCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-C
Q 001245 419 NRRTEALTTSIDGMIWTGGANGLLLQWDP-N------GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-G 488 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~laSGS~DgtIklWD~-t------G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G 488 (1115)
...|.++.|.++..+++|+.|++|++||+ . +.+++++.+|...+++++ ++|.+||+|+.||+|++|+.. +
T Consensus 661 ~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 661 SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 88999999986667999999999999998 3 367899999999998887 679999999999999999965 3
Q ss_pred cccc-------------ccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 489 NLLG-------------GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 489 ~ll~-------------~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
..+. ....|...|.++++ ++.++++|+.||+|++|++
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 2221 12346677999985 6789999999999999986
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-24 Score=226.44 Aligned_cols=274 Identities=16% Similarity=0.199 Sum_probs=208.6
Q ss_pred EEEEeCC--eEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC
Q 001245 137 TIVCTEE--QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1115)
Q Consensus 137 ~l~~~~~--~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D 212 (1115)
.++-+.+ .++| |.|++||+|+...+....| ......+| ...|..+|++|.|++||+||.|
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~h-krsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGH-KRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCcEEE---------------EEeccccc-hheeeeeeecCCCcEEEEeecc
Confidence 4555544 3666 6899999999875433222 00011245 7899999999999999999999
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEee
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~ 291 (1115)
.|+-+|.-.. ..|+++.+++||...|.||+||++|. ||++|.|+.|-+|..+... |-.+.++
T Consensus 83 ~t~~Iw~k~~------~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd--------Efec~aV--- 145 (312)
T KOG0645|consen 83 ATVVIWKKED------GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD--------EFECIAV--- 145 (312)
T ss_pred ceEEEeecCC------CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC--------cEEEEee---
Confidence 9999998765 34788889999999999999999998 8999999999999986422 1122222
Q ss_pred eeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccc
Q 001245 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1115)
Q Consensus 292 ~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~ 370 (1115)
|..|. .+|+.+...|...+|+|++ |.|||+|+-..+. .
T Consensus 146 -----L~~Ht----------qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd---------d----------------- 184 (312)
T KOG0645|consen 146 -----LQEHT----------QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD---------D----------------- 184 (312)
T ss_pred -----ecccc----------ccccEEEEcCCcceeEEeccCCeEEEEeecCCC---------C-----------------
Confidence 34565 7899999999999999998 7899999843110 0
Q ss_pred cceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcCCC
Q 001245 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG 449 (1115)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~tG 449 (1115)
|..-.++.+|...|.+++|.+.| ++++++.|++|+||-.-
T Consensus 185 --------------------------------------W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~- 225 (312)
T KOG0645|consen 185 --------------------------------------WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY- 225 (312)
T ss_pred --------------------------------------eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-
Confidence 11112355677788999999988 59999999999999642
Q ss_pred CeeEEe-ecCCCcEEEEEecCCEEEeeecccEEEEEeCC-C------ccc-cccccccCCEEEEEec---CCEEEeecCC
Q 001245 450 NRLQDF-QYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-G------NLL-GGWVAHSSPVIKMAVG---AGYIFTLANH 517 (1115)
Q Consensus 450 ~~l~tl-~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G------~ll-~~l~gH~~~V~sva~d---g~~laSgS~D 517 (1115)
..+ .-|+..++.|+.+...||||+.|+.|+|+-.. + +++ ..-.+|...|++|+.+ +.+|+|||.|
T Consensus 226 ---~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 226 ---TDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred ---cCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence 112 23778899998778899999999999999743 1 222 3456899999999964 4689999999
Q ss_pred CceEEeeec
Q 001245 518 GGIRGWNVT 526 (1115)
Q Consensus 518 gtIRlWdl~ 526 (1115)
|+|++|.+.
T Consensus 303 G~v~~W~l~ 311 (312)
T KOG0645|consen 303 GIVNFWELE 311 (312)
T ss_pred ceEEEEEec
Confidence 999999874
No 40
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.7e-26 Score=260.95 Aligned_cols=247 Identities=21% Similarity=0.337 Sum_probs=196.0
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcc
Q 001245 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (1115)
Q Consensus 196 ~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~ 273 (1115)
++..|. .+++|+||++||.||+|+...... ...-....+++.|.++|+.+++.-+|+ |+|+|.|-|||+|+...+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~--~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSN--EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccC--CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 455554 466699999999999999875221 000112557899999999999999997 9999999999999987642
Q ss_pred eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE-eCCCCEEEeec-CCeEEEEEcCCcc--EEEEEe
Q 001245 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRE--LLKVFN 349 (1115)
Q Consensus 274 ~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las-~~~~~~v~S~s-d~tI~lWD~~tg~--ll~tl~ 349 (1115)
..+ ...++.|. +.|+|++. ..+..+++|+| |+.|.|||+.+|. ++.++.
T Consensus 107 -~~c----------------~stir~H~----------DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 107 -TFC----------------MSTIRTHK----------DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred -chh----------------Hhhhhccc----------chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc
Confidence 100 12345666 78999998 77788888887 7899999999873 333221
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccc-cCCCceEEEEEc
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG-DDNRRTEALTTS 428 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~-~h~~~V~aVa~S 428 (1115)
. + . ...+. ++...|.++|.+
T Consensus 160 ~---~------------------------------t--------------------------~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 160 N---V------------------------------T--------------------------VNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred c---c------------------------------c--------------------------cccCCCCCccceeeeecC
Confidence 0 0 0 00011 556678899999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s 503 (1115)
+.|. +++|+..+-+++||. +++.+..+.||+.-|.+|. .||++++|||+||||+|||+. .+|+.++..|.+.||+
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 9988 689999999999999 8999999999999999988 689999999999999999997 7899999999999999
Q ss_pred EEecC--CEEEeecCCCceEEeeecCCCC
Q 001245 504 MAVGA--GYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 504 va~dg--~~laSgS~DgtIRlWdl~~p~p 530 (1115)
+..+. +.+++|+.|+.|..=|+..|..
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchh
Confidence 98654 5799999999999999988743
No 41
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=229.40 Aligned_cols=241 Identities=17% Similarity=0.247 Sum_probs=193.6
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| .+.|+|+-+++|++.|+|+|.||.+.+||.-+.+ .++-+.--...|-..||+|.|+ ++.|+.|+..-|
T Consensus 53 GH-~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--------K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 53 GH-LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--------KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred cc-ccceeeeEecCCcCeEEeeccCCeEEEEEccccc--------ceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 56 8899999999999999999999999999987622 1333444577899999999998 688999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLK 346 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~ 346 (1115)
+++.+.... ..+.+ -..+.+|. +.+.|.-+-+++..|-+.+|.|..+||+++|+.+.
T Consensus 124 y~ls~~d~~--------g~~~v-----~r~l~gHt----------gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 124 YPLSTRDAE--------GNVRV-----SRELAGHT----------GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQ 180 (343)
T ss_pred Eeccccccc--------cccee-----eeeecCcc----------ceeEEEEEcCCCceEecCCCceEEEEEcccceEEE
Confidence 999753211 11111 12245666 45556666667777777789999999999999877
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
.|. +|++.|.++.
T Consensus 181 ~f~-------------------------------------------------------------------GH~gDV~sls 193 (343)
T KOG0286|consen 181 VFH-------------------------------------------------------------------GHTGDVMSLS 193 (343)
T ss_pred Eec-------------------------------------------------------------------CCcccEEEEe
Confidence 664 4455566777
Q ss_pred EcC-CCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccc--cc
Q 001245 427 TSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA--HS 498 (1115)
Q Consensus 427 ~S~-Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g--H~ 498 (1115)
++| ++. ++||+.|++.+|||+ .|.|.|+|.+|...|++|+ |+|.-+++||.|++.|++|+. .+.+..+.. -.
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 777 665 799999999999999 8999999999999999999 899999999999999999987 666666652 23
Q ss_pred CCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 499 ~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.+|++++| .|++|+.|..|.++.+||...
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccc
Confidence 48899986 799999999999999999754
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=7.4e-26 Score=248.68 Aligned_cols=264 Identities=22% Similarity=0.237 Sum_probs=212.6
Q ss_pred CCeEEEe-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 142 ~~~l~ag-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
+.+|+.| +-|.+-+|+..+..... ...-| -++|.++.++++|.+++||+.||.||.|+.
T Consensus 108 GRRLltgs~SGEFtLWNg~~fnFEt-------------------ilQaH-Ds~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGTSFNFET-------------------ILQAH-DSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred CceeEeecccccEEEecCceeeHHH-------------------Hhhhh-cccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 4567764 56789999974332211 11246 789999999999999999999999999998
Q ss_pred CCCCCCCCCCCcceEEeecCC-CCEEEEEEeCCC-cEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeec
Q 001245 221 NARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYG-DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~GH~-~~V~sVafSpdG-~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~ 298 (1115)
+- ..++.+++|. ..|++|+|||+. +++|+|+||+|||||..-.+.. ..|+
T Consensus 168 nm---------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee-------------------~vL~ 219 (464)
T KOG0284|consen 168 NM---------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE-------------------RVLR 219 (464)
T ss_pred ch---------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh-------------------heec
Confidence 75 2355667765 999999999965 4899999999999998543221 1247
Q ss_pred ccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEE
Q 001245 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (1115)
Q Consensus 299 ~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~ 377 (1115)
||. .+|+++..-+....|+|++ |..|++||.++|.|+.++.+
T Consensus 220 GHg----------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~--------------------------- 262 (464)
T KOG0284|consen 220 GHG----------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG--------------------------- 262 (464)
T ss_pred cCC----------CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh---------------------------
Confidence 787 7899999999999999988 57899999999999876533
Q ss_pred ecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEe
Q 001245 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF 455 (1115)
Q Consensus 378 ~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl 455 (1115)
|...|.++.|++++- |+|+|.|..++++|+ +-+.++++
T Consensus 263 ----------------------------------------HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 263 ----------------------------------------HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ----------------------------------------ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 334456677777776 899999999999999 68899999
Q ss_pred ecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC-Ccc-ccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 456 QYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-GNL-LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 456 ~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~-G~l-l~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
++|...|++++ | .-.++.+|+.||.|..|.+. .+. ...=.+|...|++++. =|..|+|||.|.++|.|.-.-|
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 99999999998 4 47899999999999999986 333 3445699999999995 5889999999999999987655
Q ss_pred CC
Q 001245 529 GP 530 (1115)
Q Consensus 529 ~p 530 (1115)
+.
T Consensus 383 ~d 384 (464)
T KOG0284|consen 383 GD 384 (464)
T ss_pred CC
Confidence 43
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.9e-25 Score=239.59 Aligned_cols=272 Identities=13% Similarity=0.124 Sum_probs=201.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
+..|.-+.||++|++|||||+|.|..+|.+... ..++...++.||..+|.-|.||||.+ |++|+.|..+++||+
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d-----~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYD-----VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecC-----cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 789999999999999999999999999998641 22566789999999999999999987 899999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
.|+.+..... .++. ..+.+.+..|++..+++++ |.+|..||+. |..+...
T Consensus 299 ~tgd~~~~y~------------------~~~~----------~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 299 DTGDLRHLYP------------------SGLG----------FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred Ccchhhhhcc------------------cCcC----------CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 9987652211 0111 2344566778888888776 7899999975 3333322
Q ss_pred ecCC-ceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceE-EeccCcEEEEecc----cccccCCCce
Q 001245 349 NIDG-QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAI-MGAADAVRRVAAK----GGFGDDNRRT 422 (1115)
Q Consensus 349 ~~~~-~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~-~Gs~d~v~~~~~~----g~l~~h~~~V 422 (1115)
.+-. +.+. .++...++..++ ++.+..++...-. ..+......+
T Consensus 350 ~gvr~~~v~-------------------------------dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 350 EGVRDPKVH-------------------------------DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred cccccceeE-------------------------------EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 1100 0111 122233333332 2222223332221 2244455688
Q ss_pred EEEEEcCCCcE-EEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE-----ecCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 423 EALTTSIDGMI-WTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-----TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 423 ~aVa~S~Dg~l-aSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla-----~dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
.+..+|.||++ ++-=.+..|.+||+ +...++.+.||...-.-|. .+.+++||||+|+.|+||+.. |+++..+
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee
Confidence 99999999995 56777999999999 7788899999987643333 245899999999999999986 9999999
Q ss_pred ccccCCEEEEEe---cCCEEEeecCCCceEEeeecC
Q 001245 495 VAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 495 ~gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.||+..|++|+. ++.++||||.|||||||-...
T Consensus 479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999995 667999999999999997653
No 44
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=218.96 Aligned_cols=265 Identities=16% Similarity=0.201 Sum_probs=199.9
Q ss_pred ccccccceeeEEEEEeCCe-----------EE-EeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCc
Q 001245 126 LRETQIGCFLRTIVCTEEQ-----------LW-AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS 193 (1115)
Q Consensus 126 l~~~~~~~~l~~l~~~~~~-----------l~-ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~ 193 (1115)
+++...|.|.+++--.++| ++ |+..-.||++|+.++..--. ...-+| +..
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv-----------------~t~e~h-~kN 85 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPV-----------------ATFEGH-TKN 85 (311)
T ss_pred eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCce-----------------eEEecc-CCc
Confidence 3456667777776443333 23 35667999999998765211 112245 789
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCc
Q 001245 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 194 V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~ 272 (1115)
|+++.|-.+|++.+|||.||++|+||+..- .+...-.|..+|++|.+.|+.. |+||-.+|.||+||+...
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~---------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSL---------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCc---------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 999999999999999999999999999852 2334456889999999999864 999999999999999775
Q ss_pred ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEEecC
Q 001245 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID 351 (1115)
Q Consensus 273 ~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl~~~ 351 (1115)
.+.-.+.+|. ...+..+...+++..++.+.+ ++..+|++-++.-..-|.
T Consensus 157 ~c~~~liPe~----------------------------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~-- 206 (311)
T KOG0315|consen 157 SCTHELIPED----------------------------DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE-- 206 (311)
T ss_pred ccccccCCCC----------------------------CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce--
Confidence 5543333321 134667778888888888775 679999976522111000
Q ss_pred CceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC
Q 001245 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG 431 (1115)
Q Consensus 352 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg 431 (1115)
+..+|..|.+-+....+|||+
T Consensus 207 -----------------------------------------------------------P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 207 -----------------------------------------------------------PVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred -----------------------------------------------------------EhhheecccceEEEEEECCCC
Confidence 011244566667777899999
Q ss_pred c-EEEEeCCCeEEEEcCCC--CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE
Q 001245 432 M-IWTGGANGLLLQWDPNG--NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA 505 (1115)
Q Consensus 432 ~-laSGS~DgtIklWD~tG--~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva 505 (1115)
+ ||++|.|++++||+.++ +.-..+++|..+|+..+ .||+||++|++|+++++||++ |+.++.+.||-....|++
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 8 89999999999999965 45567899999999887 589999999999999999997 899999999998888877
Q ss_pred e
Q 001245 506 V 506 (1115)
Q Consensus 506 ~ 506 (1115)
.
T Consensus 308 l 308 (311)
T KOG0315|consen 308 L 308 (311)
T ss_pred e
Confidence 5
No 45
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=6.1e-24 Score=246.11 Aligned_cols=273 Identities=17% Similarity=0.225 Sum_probs=205.6
Q ss_pred cceeeEEEEEeCCe-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEE-EEEc-CCCCEE
Q 001245 131 IGCFLRTIVCTEEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC-MVGD-EASGVV 206 (1115)
Q Consensus 131 ~~~~l~~l~~~~~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~-la~s-~dg~~L 206 (1115)
+.+-+|+++....- +.+ |.|+++|||+-....-+.. .++. .+ .+.+.+ +.+. .++.+|
T Consensus 13 H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~---------------~~~~--~~-~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 13 HKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET---------------HAFE--GP-KGFIANSICYAESDKGRL 74 (745)
T ss_pred CccchheeEecCCeEEeecCCCCceeeeeccCcccccc---------------eecc--cC-cceeeccceeccccCcce
Confidence 33445565555444 333 4699999999754443321 1221 12 344444 5555 367789
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
++|+.|++|.+|.+.+. .+..+|+||...|.|++.-.++.|+|||+|.|+|+|-......
T Consensus 75 ~~g~~D~~i~v~~~~~~--------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~------------ 134 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQA--------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY------------ 134 (745)
T ss_pred EeecccceEEEEecCCC--------CchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc------------
Confidence 99999999999999863 4577899999999999988888899999999999998743211
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
.+.+|. ..|..+++-+.+ +++++ .|++||+|.. |+++++|+
T Consensus 135 ---------~l~gH~----------asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~---------------- 176 (745)
T KOG0301|consen 135 ---------SLQGHT----------ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS---------------- 176 (745)
T ss_pred ---------ccCCcc----------hheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc----------------
Confidence 134565 566777777776 55555 5899999995 56666554
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQW 445 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklW 445 (1115)
+|+..|+.+++-+++.++|++.||.||+|
T Consensus 177 ---------------------------------------------------gHtD~VRgL~vl~~~~flScsNDg~Ir~w 205 (745)
T KOG0301|consen 177 ---------------------------------------------------GHTDCVRGLAVLDDSHFLSCSNDGSIRLW 205 (745)
T ss_pred ---------------------------------------------------cchhheeeeEEecCCCeEeecCCceEEEE
Confidence 45555667777788889999999999999
Q ss_pred cCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEEe-cCCEEEeecCCCceEE
Q 001245 446 DPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRG 522 (1115)
Q Consensus 446 D~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~-dg~~laSgS~DgtIRl 522 (1115)
|++|+++.++.||++-|+++. .+++.++|+++|+++|+|+.. .|.+.+.--+-.||++.. ...-|++|+.||.|||
T Consensus 206 ~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrV 284 (745)
T KOG0301|consen 206 DLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRV 284 (745)
T ss_pred eccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEeeCCCEEEeccCceEEE
Confidence 999999999999999999998 678999999999999999976 666666555558999874 5556889999999999
Q ss_pred eeecCCCCC
Q 001245 523 WNVTSPGPL 531 (1115)
Q Consensus 523 Wdl~~p~pl 531 (1115)
|....-.-.
T Consensus 285 fT~~k~R~A 293 (745)
T KOG0301|consen 285 FTVDKDRKA 293 (745)
T ss_pred EEecccccC
Confidence 998753333
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=3.6e-23 Score=225.32 Aligned_cols=315 Identities=14% Similarity=0.153 Sum_probs=217.5
Q ss_pred eeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe
Q 001245 134 FLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS 210 (1115)
.+-+++.+ +..|.+ |.|.-..||++.+|..+. .-.+| ..+|.|+.|+.+|.+||||.
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-------------------eltgH-KDSVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-------------------ELTGH-KDSVTCCSFSHDGTLLATGD 125 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCccee-------------------EecCC-CCceEEEEEccCceEEEecC
Confidence 34455666 555665 688899999999886433 23356 78999999999999999999
Q ss_pred CCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 211 ~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
.+|.|++|.+.++ .....+-+--+-+-=|.+.|-+. |+.|+.||.|..|.+..+....
T Consensus 126 msG~v~v~~~stg--------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k------------- 184 (399)
T KOG0296|consen 126 MSGKVLVFKVSTG--------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK------------- 184 (399)
T ss_pred CCccEEEEEcccC--------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceee-------------
Confidence 9999999999874 23344433344555678889887 7899999999999997642221
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCce-eeEEeccCCCCcc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQI-ENRVDMSLLPDFA 367 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~-~~~v~~s~~~~~~ 367 (1115)
.+.||. .++.+=.+.++|.++.++. |++|++||..||..++.++...+. ...+.+.......
T Consensus 185 ------v~~Gh~----------~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 185 ------VMSGHN----------SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL 248 (399)
T ss_pred ------EecCCC----------CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence 123444 3444444567788888775 689999999999999988644332 1111111111100
Q ss_pred ccccceEEEEecCCCCccceeeeeecccc-ceEEeccCcEEEEecc---cccccCCCceEEEEEcC---CCc-EEEEeCC
Q 001245 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAK---GGFGDDNRRTEALTTSI---DGM-IWTGGAN 439 (1115)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~Gs~d~v~~~~~~---g~l~~h~~~V~aVa~S~---Dg~-laSGS~D 439 (1115)
.+.. .++. ....+..+.+...... ....++...+++|.+.| .=. .|.|+-|
T Consensus 249 ---------~~g~------------~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 249 ---------TKGN------------SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ---------Eecc------------CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 0100 0000 0111112222222210 01123334445555433 322 4799999
Q ss_pred CeEEEEcCCCCeeEEeecCCCcEEEEEecC-CEEEeeecccEEEEEeCC-CccccccccccCCEEEEE--ecCCEEEeec
Q 001245 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFG-SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLA 515 (1115)
Q Consensus 440 gtIklWD~tG~~l~tl~gH~~~V~sla~dG-~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS 515 (1115)
|+|-|||.....++..-.|..+|+.+...+ .+|++++.+|+|+.||.. |+++.++.||+..|.+++ ++.++++|+|
T Consensus 308 G~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred ceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 999999997666777778999999999776 899999999999999976 999999999999999987 5889999999
Q ss_pred CCCceEEeeec
Q 001245 516 NHGGIRGWNVT 526 (1115)
Q Consensus 516 ~DgtIRlWdl~ 526 (1115)
.|++.+|+++.
T Consensus 388 ~D~~a~VF~v~ 398 (399)
T KOG0296|consen 388 DDNTALVFEVP 398 (399)
T ss_pred CCCeEEEEecC
Confidence 99999999863
No 47
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.3e-24 Score=243.30 Aligned_cols=250 Identities=16% Similarity=0.187 Sum_probs=194.9
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~ 228 (1115)
..|.|.+||-+|...++. | + +. .-||.+..|=+--.+|++||.|+.||+++..++
T Consensus 33 ynG~V~IWnyetqtmVks-----------------f-e-V~-~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~----- 87 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKS-----------------F-E-VS-EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG----- 87 (794)
T ss_pred ecCeeEEEecccceeeee-----------------e-e-ec-ccchhhheeeeccceEEEecCCceEEEEecccc-----
Confidence 578999999998887763 1 1 33 457888888777889999999999999999873
Q ss_pred CCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCc-ceeeccCCCcceeEEEEeeeeeeeecccceecce
Q 001245 229 DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1115)
Q Consensus 229 ~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~-~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~ 306 (1115)
+.+.+|++|.+-|++|+..|.-- ++|+|+|-+||+||++.. .+.. ...||.
T Consensus 88 ---ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q-------------------tfeGH~----- 140 (794)
T KOG0276|consen 88 ---EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ-------------------TFEGHE----- 140 (794)
T ss_pred ---eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-------------------EEcCcc-----
Confidence 55889999999999999999754 789999999999999862 2221 235565
Q ss_pred eeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCc
Q 001245 307 SSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1115)
Q Consensus 307 ~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (1115)
..|.++++.| +..+.+|++ |.|||||.+.+..+..||
T Consensus 141 -----HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl------------------------------------ 179 (794)
T KOG0276|consen 141 -----HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL------------------------------------ 179 (794)
T ss_pred -----eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee------------------------------------
Confidence 4567778766 456677776 899999998655544444
Q ss_pred cceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC---cEEEEeCCCeEEEEcC-CCCeeEEeecCCC
Q 001245 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (1115)
Q Consensus 385 ~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg---~laSGS~DgtIklWD~-tG~~l~tl~gH~~ 460 (1115)
.+|...|++|.+-+.| .|+||+.|.+||+||. +-.|++||.||..
T Consensus 180 -------------------------------~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~ 228 (794)
T KOG0276|consen 180 -------------------------------EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN 228 (794)
T ss_pred -------------------------------eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence 3455556666654444 6999999999999999 8899999999999
Q ss_pred cEEEEEe--cCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE--ecCCEEEeecCCCceEE
Q 001245 461 AVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRG 522 (1115)
Q Consensus 461 ~V~sla~--dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRl 522 (1115)
.|.++++ .=..++|||+|||||||+.. =++..++.---+.||+|+ .++..++.|...|.|-+
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999994 45799999999999999975 456667776778899998 35566777766665543
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=3.9e-25 Score=247.76 Aligned_cols=269 Identities=17% Similarity=0.193 Sum_probs=208.4
Q ss_pred eeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 187 SVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 187 s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
++| +..|.|+.|.| .+.+|+||+.|+.|+||++-.. .++++++.||+.+|.+++|+.+|. ++|+|.|++|
T Consensus 211 ~gH-~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 211 SGH-TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cCC-ccccchhhhccceeeEEEecCCCceEEEEEEecC-------cceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 455 88999999999 8999999999999999998641 256889999999999999999997 8999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCE-E-EeecCCeEEEEEcCCc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-V-WSAGFLSFALWDARTR 342 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~-v-~S~sd~tI~lWD~~tg 342 (1115)
|+||++||.++..+... --..|+-+.+++.. + +.++++.|+.||+++|
T Consensus 283 KlwDtETG~~~~~f~~~------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred eeeccccceEEEEEecC------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 99999999887544221 11234445555533 2 3345789999999999
Q ss_pred cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc----ccc--
Q 001245 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK----GGF-- 415 (1115)
Q Consensus 343 ~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~----g~l-- 415 (1115)
+.++.+..|-+. ...+.|.+.+++.++.+++. ++.|... -.+
T Consensus 333 kvvqeYd~hLg~-------------------------------i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~ 381 (503)
T KOG0282|consen 333 KVVQEYDRHLGA-------------------------------ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIA 381 (503)
T ss_pred HHHHHHHhhhhh-------------------------------eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhc
Confidence 988776444333 23456777777777777764 5555432 111
Q ss_pred ccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCC----CCeeEEeecCCCcEEEEE----ecCCEEEeeecccEEEEEeC
Q 001245 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN----GNRLQDFQYLPFAVQCLC----TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~t----G~~l~tl~gH~~~V~sla----~dG~~LaSGs~DGtIrlWD~ 486 (1115)
.-+.....++...|.+. ++.=|.|+.|-++.+. -+.-..|+||..+=+++. |||++|+||+.||.+.+||-
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdw 461 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDW 461 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeec
Confidence 11234567888888877 6788889999999872 345567899987654443 89999999999999999998
Q ss_pred C-CccccccccccCCEEEEEec---CCEEEeecCCCceEEee
Q 001245 487 E-GNLLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 487 ~-G~ll~~l~gH~~~V~sva~d---g~~laSgS~DgtIRlWd 524 (1115)
+ -+++..|++|.++++.+.+. .+.+||+|.||.|++|+
T Consensus 462 kt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 462 KTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 7 68999999999999999864 46899999999999996
No 49
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-24 Score=220.76 Aligned_cols=141 Identities=35% Similarity=0.537 Sum_probs=125.9
Q ss_pred ceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccchhHHH-HHH
Q 001245 632 TFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR-RNA 710 (1115)
Q Consensus 632 ~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~-Rn~ 710 (1115)
.|..+.+.+|+|+.+.+|++.++.+++.++++.++++|+++.+||||||+++++++++.+|||||||+||.++..+ ||+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~~~r~~ 81 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVYERRNE 81 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhHHHhhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999888 999
Q ss_pred HHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCC-cC-CcceEEEecccccccCCCChHHHHHHHh
Q 001245 711 DFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPE-LS-EADMVIFLGDFNYRLDGITYDEARDFIS 788 (1115)
Q Consensus 711 d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~-~~D~vfw~GDlNyRi~~~~~~~v~~~i~ 788 (1115)
||.+|++++.|....... .+. +. .||.|||+||||||+.+.++.+++.++.
T Consensus 82 d~~~i~~~~~~~~~~~~~---------------------------~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~ 134 (145)
T KOG0565|consen 82 DYQEILNGLRFPSVSPAS---------------------------EPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLIS 134 (145)
T ss_pred cHHHHHhhccccccCccc---------------------------ccccccccccEEEEecceeeeecCcccccchhhhh
Confidence 999999999997543210 011 11 2899999999999999855888999999
Q ss_pred hcChhHHhcch
Q 001245 789 QRCFDWLRERD 799 (1115)
Q Consensus 789 ~~~~~~Ll~~D 799 (1115)
.+.++.|+++|
T Consensus 135 ~~~~~~l~~~d 145 (145)
T KOG0565|consen 135 VKSRDGLLEKD 145 (145)
T ss_pred hcchhhhhccC
Confidence 99999998876
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.3e-23 Score=244.91 Aligned_cols=299 Identities=14% Similarity=0.205 Sum_probs=231.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
++.|..++|-|.--+|.++...|.|++||-.-+. .+..|.+|.|||..|+|.|.+- ++||++|.+||||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhh--------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 4567779999999999999999999999976532 3567899999999999999987 479999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl 348 (1115)
.+..|+++ |.||. +.|+.+.+.+.---|.|++| +||+||+-.+++|+.++
T Consensus 81 k~rrclft-------------------L~GHl----------DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 81 KTRRCLFT-------------------LLGHL----------DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred ccceehhh-------------------hcccc----------ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 88776643 45665 56777777777677778874 89999999999999999
Q ss_pred ecCCceeeEEeccCCCCccc--cccceEEEEecCCCCccceee-eeecc--ccce---EEeccCcEEEEecccccccCCC
Q 001245 349 NIDGQIENRVDMSLLPDFAM--EDEFKTKIVTSSKKDKAQSSF-GFFQR--SRNA---IMGAADAVRRVAAKGGFGDDNR 420 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~v-~f~~~--~~~~---~~Gs~d~v~~~~~~g~l~~h~~ 420 (1115)
.+|.+.+.+..|+|..+..+ .-+-.+++|+-++-.+...+- ++-.. +... .-|..|.|.. ..+.||.+
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK----~VLEGHDR 207 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK----HVLEGHDR 207 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee----eeeccccc
Confidence 99999999999999766533 334457777544322211111 11111 1111 2244454433 34789999
Q ss_pred ceEEEEEcCC-CcEEEEeCCCeEEEEcCC---CCeeEEeecCCCcEEEEEecC--CEEEeeecccEEEEEeCC-Cccccc
Q 001245 421 RTEALTTSID-GMIWTGGANGLLLQWDPN---GNRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLDLE-GNLLGG 493 (1115)
Q Consensus 421 ~V~aVa~S~D-g~laSGS~DgtIklWD~t---G~~l~tl~gH~~~V~sla~dG--~~LaSGs~DGtIrlWD~~-G~ll~~ 493 (1115)
.|+.++|.|- ..++||+.|+.||+|..+ --.+-+..||.+.|.|+-+++ .+|.|.|+|++|||||++ -+.+++
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 9999999886 457999999999999983 346788999999999999665 899999999999999997 567899
Q ss_pred cccccCCEEEEEecCC-EEEeecCCCceEEeeecCCCC
Q 001245 494 WVAHSSPVIKMAVGAG-YIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 494 l~gH~~~V~sva~dg~-~laSgS~DgtIRlWdl~~p~p 530 (1115)
|+--.+.-|.++..+. .|+.+++|+.+-++-+.--.|
T Consensus 288 frrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 288 FRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 9877788888887654 377788999999998874333
No 51
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=3.4e-24 Score=235.70 Aligned_cols=235 Identities=21% Similarity=0.319 Sum_probs=191.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCC
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~ 270 (1115)
.+|..|.+.|+|+.|.||++-|..-+|+..+ +.....+++|..+|++|.+|++|. ++||+.||.||.|+..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCce--------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 4788899999999999999999999999753 233345789999999999999998 8999999999999975
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
-.-.. ...+|. ...|+++++++.+.+.++++ |++|+|||....+..+++.
T Consensus 169 mnnVk--------------------~~~ahh---------~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 169 MNNVK--------------------IIQAHH---------AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred hhhhH--------------------HhhHhh---------hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 31100 011121 14688999999999999988 5899999987665554444
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
+|+. .|.++.+.|
T Consensus 220 GHgw-------------------------------------------------------------------dVksvdWHP 232 (464)
T KOG0284|consen 220 GHGW-------------------------------------------------------------------DVKSVDWHP 232 (464)
T ss_pred cCCC-------------------------------------------------------------------CcceeccCC
Confidence 4443 344455444
Q ss_pred C-CcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEE
Q 001245 430 D-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (1115)
Q Consensus 430 D-g~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sv 504 (1115)
. |.|+|||.|+.||+||. +|+|+-++.+|...|+.+. ++|.+|+++|.|..++++|+. -+-+.+++||...|+++
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence 4 45899999999999999 9999999999999999998 679999999999999999987 56789999999999999
Q ss_pred Ee---cCCEEEeecCCCceEEeeecCCCC
Q 001245 505 AV---GAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 505 a~---dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
+. ..+++.||+.||.|..|.+..--|
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred ccccccccceeeccCCCceEEEecccccc
Confidence 84 567899999999999999874333
No 52
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2e-23 Score=222.40 Aligned_cols=283 Identities=19% Similarity=0.240 Sum_probs=212.5
Q ss_pred cceeeEEEEEeCCeEE-------------EeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEE
Q 001245 131 IGCFLRTIVCTEEQLW-------------AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCM 197 (1115)
Q Consensus 131 ~~~~l~~l~~~~~~l~-------------ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~l 197 (1115)
....++.+.+|.+.+| |++|.|.++|.+++|.|+.. +.+| .++|+|+
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH-~GSVNsi 196 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT-------------------YTGH-TGSVNSI 196 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee-------------------eccc-ccceeeE
Confidence 4456666777766565 25899999999999998863 4467 8999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECC----CCC--C--------------------------CCCCCCcceEEeecCCCCEE
Q 001245 198 VGDEASGVVWSGHRDGRIMCWKMN----ARL--L--------------------------DSDDGFGEVLSWQAHRGPVL 245 (1115)
Q Consensus 198 a~s~dg~~LaSGS~DgtIrlWdl~----~~~--~--------------------------~~~~~~~~~~~l~GH~~~V~ 245 (1115)
.|.+.+.+++|||.|++..+|... ... . ++.....++..|+||.+.|.
T Consensus 197 kfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~ 276 (481)
T KOG0300|consen 197 KFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS 276 (481)
T ss_pred EeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE
Confidence 999999999999999999999821 100 0 00111223446899999999
Q ss_pred EEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC
Q 001245 246 SLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA 324 (1115)
Q Consensus 246 sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~ 324 (1115)
+..+-..|+ ++++|+|.|..+||+++++.... |.||. .+....+..+...
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~-------------------LtGHd----------~ELtHcstHptQr 327 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNI-------------------LTGHD----------SELTHCSTHPTQR 327 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCceecc-------------------ccCcc----------hhccccccCCcce
Confidence 999888886 89999999999999999876532 34454 2333333333444
Q ss_pred EEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc
Q 001245 325 KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1115)
Q Consensus 325 ~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~ 403 (1115)
+|++++ |.|++|||.+ +.++..
T Consensus 328 LVvTsSrDtTFRLWDFR--eaI~sV------------------------------------------------------- 350 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFR--EAIQSV------------------------------------------------------- 350 (481)
T ss_pred EEEEeccCceeEeccch--hhccee-------------------------------------------------------
Confidence 455555 6789999965 111110
Q ss_pred CcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-C-CCeeEEeecCCCcEEEEE--ecCCEEEeeeccc
Q 001245 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG 479 (1115)
Q Consensus 404 d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-t-G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DG 479 (1115)
..|.||+..|.++.|..|..+++||.|.|||+||+ + -..+.++.. ..+++-|+ ..+..||.--.+.
T Consensus 351 ---------~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 351 ---------AVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred ---------eeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCc
Confidence 12678889999999999999999999999999999 4 457777765 46777777 3455888888889
Q ss_pred EEEEEeCCCcccccc-----ccccCCEEEEEecC----CEEEeecCCCceEEeeecCCC
Q 001245 480 IVQVLDLEGNLLGGW-----VAHSSPVIKMAVGA----GYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 480 tIrlWD~~G~ll~~l-----~gH~~~V~sva~dg----~~laSgS~DgtIRlWdl~~p~ 529 (1115)
.|||+|++|+.+..+ +||.-.|.|.++-. ..|+|++.|..+-.|.+..|.
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 999999998766544 59999999998522 358999999999999998764
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.3e-22 Score=208.67 Aligned_cols=264 Identities=16% Similarity=0.183 Sum_probs=199.1
Q ss_pred eccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
+| .+.+..+++.|. |.+|||+|.|.+||+|+...+ ....+...+ .+|+..|++||++|.|+ |++||.|.|+
T Consensus 12 gh-~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-----~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 12 GH-KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-----DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred CC-CCcEEEEEeccCCceEEEeecCCceEEEEecCCC-----CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45 778999999998 889999999999999998831 112333344 58999999999999999 7999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
-||.-..++-. + .-.|+||. ++|++++.+.++..|++++ |+.|=||.+..+.
T Consensus 86 ~Iw~k~~~efe---------c--------v~~lEGHE----------nEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 86 VIWKKEDGEFE---------C--------VATLEGHE----------NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred EEeecCCCcee---------E--------Eeeeeccc----------cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 99986543211 0 12356777 8999999999999999998 7899999875332
Q ss_pred ---EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCC
Q 001245 344 ---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1115)
Q Consensus 344 ---ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~ 420 (1115)
++.+ +.+|+.
T Consensus 139 Efec~aV-------------------------------------------------------------------L~~Htq 151 (312)
T KOG0645|consen 139 EFECIAV-------------------------------------------------------------------LQEHTQ 151 (312)
T ss_pred cEEEEee-------------------------------------------------------------------eccccc
Confidence 2222 445666
Q ss_pred ceEEEEEcCC-CcEEEEeCCCeEEEEcCC-C---CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccc
Q 001245 421 RTEALTTSID-GMIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGG 493 (1115)
Q Consensus 421 ~V~aVa~S~D-g~laSGS~DgtIklWD~t-G---~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~ 493 (1115)
.|..|.+.|- +.|+|+|.|+|||+|+-. + +|+++|.+|.+.|++++ +.|.+|++++.|++|+||-.- ..
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----~~ 227 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----TD 227 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----cC
Confidence 6666676664 358999999999999873 4 69999999999999999 459999999999999999842 22
Q ss_pred cc-cccCCEEEEEecCCEEEeecCCCceEEeeecCCCCCchhhHHHhhccccccceecccceEEEEEEe
Q 001245 494 WV-AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNV 561 (1115)
Q Consensus 494 l~-gH~~~V~sva~dg~~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv 561 (1115)
+. -|+..++.++.+...|+|++.|+.||++.-.. +|-+..+...+ +++. .....|=..-||=
T Consensus 228 ~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~-~~d~p~~~l~~-~~~~----aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESD-SPDEPSWNLLA-KKEG----AHEVDVNSVQWNP 290 (312)
T ss_pred cchhcccceEeeeecccceEeccCCCEEEEEEecC-CCCCchHHHHH-hhhc----ccccccceEEEcC
Confidence 22 37788999998877999999999999998652 33333332222 2222 1233566677885
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.4e-23 Score=233.53 Aligned_cols=234 Identities=14% Similarity=0.202 Sum_probs=196.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
+..|.|+.+.|.--++..+-+.|.+.+||-++. .++..++-..-||++..|-.--. +++||+|..|||++.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccc--------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 668999999999999999999999999999873 24667777788999999988655 789999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl 348 (1115)
.|+++... ..+|. +.+++++..|..-.+.+++| .+||+||-..+
T Consensus 85 nt~ekV~~-------------------FeAH~----------DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------ 129 (794)
T KOG0276|consen 85 NTGEKVKT-------------------FEAHS----------DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------ 129 (794)
T ss_pred ccceeeEE-------------------eeccc----------cceeeeeecCCCCeEEecCCccEEEEeeccCc------
Confidence 99877633 24454 67899999888888888775 79999996432
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
|....+|.||..-|.+|+|.
T Consensus 130 ------------------------------------------------------------wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 130 ------------------------------------------------------------WACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred ------------------------------------------------------------eeeeeEEcCcceEEEEEEec
Confidence 22223456666667777877
Q ss_pred CCC--cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE-e---cCCEEEeeecccEEEEEeCC-CccccccccccCC
Q 001245 429 IDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-T---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (1115)
Q Consensus 429 ~Dg--~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla-~---dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~ 500 (1115)
|.. ++||+|-|+|||+|.+ ...+..||+||...|+||. . |-.+|+||+.|.+|+|||.. ..|+++|.||+..
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N 229 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN 229 (794)
T ss_pred CCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc
Confidence 753 5899999999999999 7889999999999999999 2 34599999999999999987 6799999999999
Q ss_pred EEEEEecCC--EEEeecCCCceEEeeecC
Q 001245 501 VIKMAVGAG--YIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 501 V~sva~dg~--~laSgS~DgtIRlWdl~~ 527 (1115)
|..+.+.+. .++|||.|||+|||...+
T Consensus 230 vs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 999998876 689999999999999765
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=2.7e-21 Score=246.81 Aligned_cols=272 Identities=15% Similarity=0.193 Sum_probs=187.5
Q ss_pred ceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEE
Q 001245 132 GCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVW 207 (1115)
Q Consensus 132 ~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~La 207 (1115)
...+..++.+ ++++++ |.|++|+|||+.+...... ....|.....+ ...|.++++++ ++.+||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~------------~~~~~~~~~~~-~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR------------DIHYPVVELAS-RSKLSGICWNSYIKSQVA 549 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc------------ccccceEEecc-cCceeeEEeccCCCCEEE
Confidence 3445566666 455554 6899999999864321110 11122222122 56788999987 478999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC-CCc-EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp-dG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
||+.||+|++||+.++ +.+..+++|.+.|++|+|+| ++. |+|||.|++|++||+.++.+...
T Consensus 550 s~~~Dg~v~lWd~~~~--------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-------- 613 (793)
T PLN00181 550 SSNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-------- 613 (793)
T ss_pred EEeCCCeEEEEECCCC--------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--------
Confidence 9999999999999863 34667899999999999997 666 78999999999999987644311
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEE-eCCCCEEEeec-CCeEEEEEcCCcc-EEEEEecCCceeeEEeccC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS-DHSRAKVWSAG-FLSFALWDARTRE-LLKVFNIDGQIENRVDMSL 362 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las-~~~~~~v~S~s-d~tI~lWD~~tg~-ll~tl~~~~~~~~~v~~s~ 362 (1115)
+..+ ..+.++.+ .+++..+++++ |++|++||++++. .+.++.+|...+..+.|.
T Consensus 614 -----------~~~~-----------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 614 -----------IKTK-----------ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred -----------EecC-----------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 1111 23445555 34566777765 7899999998875 456666565544444332
Q ss_pred CCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----------cccccCCCceEEEEEcCC
Q 001245 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----------GGFGDDNRRTEALTTSID 430 (1115)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----------g~l~~h~~~V~aVa~S~D 430 (1115)
++..+++++.| .++.|+.. ..+.+|...+.+++++++
T Consensus 671 -------------------------------~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 671 -------------------------------DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred -------------------------------CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 12233444443 35555432 235678888999999998
Q ss_pred Cc-EEEEeCCCeEEEEcC-CCCeeEE-------------eecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 431 GM-IWTGGANGLLLQWDP-NGNRLQD-------------FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 431 g~-laSGS~DgtIklWD~-tG~~l~t-------------l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
+. |++|+.|++|++|+. .+..+.. ...|...|.+++ ++|.+|++|+.||+|+|||+
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 76 799999999999998 4433322 123556799998 68999999999999999985
No 56
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=5e-23 Score=219.74 Aligned_cols=269 Identities=17% Similarity=0.232 Sum_probs=208.6
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
++|.++ +-||-|-|||..+|....-+. -.....| -++ ..+|+|+.||.|..+||||+.||.||+|.
T Consensus 224 DgqyLvsgSvDGFiEVWny~~GKlrKDLk---------YQAqd~f--MMm-d~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 224 DGQYLVSGSVDGFIEVWNYTTGKLRKDLK---------YQAQDNF--MMM-DDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred CCceEeeccccceeeeehhccchhhhhhh---------hhhhcce--eec-ccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 667666 479999999999987543110 0000011 144 67999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeee
Q 001245 220 MNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l 297 (1115)
+.+|.| ++.| ++|+..|+|+.||.|+. ++|+|.|-|||+-.+.+|+++. ..
T Consensus 292 i~tG~C--------lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK-------------------Ef 344 (508)
T KOG0275|consen 292 IETGQC--------LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK-------------------EF 344 (508)
T ss_pred EecchH--------HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH-------------------Hh
Confidence 998654 5566 59999999999999986 8999999999999999887652 24
Q ss_pred cccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEE
Q 001245 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1115)
Q Consensus 298 ~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~ 376 (1115)
+||. +.|....+.++|..+.+++ |++|++|+..|++|+.+|++.+.-
T Consensus 345 rGHs----------Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d---------------------- 392 (508)
T KOG0275|consen 345 RGHS----------SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD---------------------- 392 (508)
T ss_pred cCcc----------ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc----------------------
Confidence 6776 4555566777888888875 799999999999999998643311
Q ss_pred EecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC-CC-cEEEEeCCCeEEEEcCCCCeeEE
Q 001245 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DG-MIWTGGANGLLLQWDPNGNRLQD 454 (1115)
Q Consensus 377 ~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~-Dg-~laSGS~DgtIklWD~tG~~l~t 454 (1115)
..|+.|..-| +. .++.+-..++|.+-++.|+.+++
T Consensus 393 -------------------------------------------~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 393 -------------------------------------------YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred -------------------------------------------ccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 0111111111 11 25666677889999999999999
Q ss_pred eecC----CCcEEEEE-ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEee
Q 001245 455 FQYL----PFAVQCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 455 l~gH----~~~V~sla-~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWd 524 (1115)
|... .+-|.|+. |-|.++++.+.|+.+..+.+. |++-+++.-|..-|..++. .-+.+||=|.||..|+|.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 8753 23476665 899999999999999999975 9999999999999999984 567899999999999995
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.4e-22 Score=206.66 Aligned_cols=233 Identities=16% Similarity=0.239 Sum_probs=184.1
Q ss_pred cceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeee
Q 001245 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSIL 310 (1115)
Q Consensus 232 ~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~ 310 (1115)
+....+..|.++|.++.|+-||. .++++.|+|||+|+...+.++.+ ..+|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt-------------------YsghG--------- 59 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHG--------- 59 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee-------------------ecCCC---------
Confidence 34567889999999999999998 67999999999999977765422 24455
Q ss_pred cCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceee
Q 001245 311 TSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (1115)
Q Consensus 311 s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v 389 (1115)
.+|..++.+.++.++++++ |+.+.+||+.||+.++.|.+|...+|.|.|.
T Consensus 60 -~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN---------------------------- 110 (307)
T KOG0316|consen 60 -HEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN---------------------------- 110 (307)
T ss_pred -ceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec----------------------------
Confidence 5677788888888998875 7899999999999999999887766655543
Q ss_pred eeeccccceEEeccC-cEEEEecc-------cccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCC
Q 001245 390 GFFQRSRNAIMGAAD-AVRRVAAK-------GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (1115)
Q Consensus 390 ~f~~~~~~~~~Gs~d-~v~~~~~~-------g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~ 460 (1115)
..+..+++|+-| .++.|+.. +.+......|.+|.++.- .|++||.||++|.||+ .|+.....-+|
T Consensus 111 ---eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-eIvaGS~DGtvRtydiR~G~l~sDy~g~-- 184 (307)
T KOG0316|consen 111 ---EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-EIVAGSVDGTVRTYDIRKGTLSSDYFGH-- 184 (307)
T ss_pred ---CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-EEEeeccCCcEEEEEeecceeehhhcCC--
Confidence 334445566655 35666653 223333455666655432 4899999999999999 89988887776
Q ss_pred cEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE----ecCCEEEeecCCCceEEeeecC
Q 001245 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA----VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 461 ~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva----~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+|+|++ +||+.+..++.|++++|.|-+ |++++..+||...=..+. -....++|||.||.|.+||+..
T Consensus 185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 788888 799999999999999999987 999999999998777665 2567899999999999999864
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7e-22 Score=204.36 Aligned_cols=263 Identities=18% Similarity=0.232 Sum_probs=203.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
.++|.++.|.-+|++..|.+.|.|||+|+.-.+. .+++..||...|..++.+.|.. ++||+.|+.|.+||+
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccccc--------eeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 6799999999999999999999999999987643 4788999999999999999875 999999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc--cEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR--ELLK 346 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg--~ll~ 346 (1115)
+|++.. -.+++|. +.|..+.+......|+|++ |.++++||-++. +.++
T Consensus 89 ~TGkv~-------------------Rr~rgH~----------aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 89 NTGKVD-------------------RRFRGHL----------AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccCeee-------------------eeccccc----------ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence 998654 2347777 7788888988888899988 689999998765 3444
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEec--ccccccC--CCce
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA--KGGFGDD--NRRT 422 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~--~g~l~~h--~~~V 422 (1115)
+|.....-+ .++.. ..-.++.|+.|+..|... .|++..+ ..+|
T Consensus 140 ildea~D~V-------------------------------~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pi 186 (307)
T KOG0316|consen 140 ILDEAKDGV-------------------------------SSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPI 186 (307)
T ss_pred hhhhhcCce-------------------------------eEEEe--cccEEEeeccCCcEEEEEeecceeehhhcCCcc
Confidence 442111110 01111 122456777776555443 3555433 3579
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE----ecCCEEEeeecccEEEEEeCC-Cccccccc
Q 001245 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC----TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla----~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~ 495 (1115)
+++.||+||. ++.|+-|++++|-|- +|++|+..+||.+.=+.+. ....++++||+||.|.+||+. +.++..+.
T Consensus 187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec
Confidence 9999999998 688999999999999 8999999999988655443 356899999999999999985 88889999
Q ss_pred cccCC-EEEEEecCCE--EEeecCCCceEEee
Q 001245 496 AHSSP-VIKMAVGAGY--IFTLANHGGIRGWN 524 (1115)
Q Consensus 496 gH~~~-V~sva~dg~~--laSgS~DgtIRlWd 524 (1115)
.|... |.+++..+++ ++++. ++.+..|-
T Consensus 267 ~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 267 VVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred cCCceeEEeeecccCccceeEec-CCceecee
Confidence 99887 7888876653 34442 45566675
No 59
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=6e-21 Score=228.74 Aligned_cols=225 Identities=12% Similarity=0.152 Sum_probs=158.7
Q ss_pred eccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC-c-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG-~-L~SgS~DgtI 264 (1115)
+| .++|++++|+| ++.+|||||.||+|++||+.++.. .......+.++.||...|.+|+|+|++ . |+|||.|++|
T Consensus 73 GH-~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 73 GQ-EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL-TQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred CC-CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc-ccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 66 88999999999 889999999999999999975321 011123466789999999999999986 3 7899999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
+|||++++.... .+.+|. ..+.++++++++..+++++ |++|+|||+++++
T Consensus 151 rIWDl~tg~~~~-------------------~l~~h~----------~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 151 NVWDVERGKAVE-------------------VIKCHS----------DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred EEEECCCCeEEE-------------------EEcCCC----------CceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 999998765431 123343 5688889999999888876 7899999999999
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
.+.++.+|.... +.
T Consensus 202 ~v~tl~~H~~~~------------------------------------------------------------------~~ 215 (493)
T PTZ00421 202 IVSSVEAHASAK------------------------------------------------------------------SQ 215 (493)
T ss_pred EEEEEecCCCCc------------------------------------------------------------------ce
Confidence 887765443210 00
Q ss_pred EEEEcCC-CcEEEE----eCCCeEEEEcC-C-CCeeEEeecCCCc-EEEEE--ecCCEEEeee-cccEEEEEeCC-Cccc
Q 001245 424 ALTTSID-GMIWTG----GANGLLLQWDP-N-GNRLQDFQYLPFA-VQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNLL 491 (1115)
Q Consensus 424 aVa~S~D-g~laSG----S~DgtIklWD~-t-G~~l~tl~gH~~~-V~sla--~dG~~LaSGs-~DGtIrlWD~~-G~ll 491 (1115)
.+.+.++ +.++++ +.|++|++||+ + ..++.+...|... +.... ++|.+|++|+ .||+|++||+. ++++
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 1112222 234332 45899999999 4 3566665544433 33333 6899999888 59999999987 6665
Q ss_pred ccccc-ccCCEEEEEecCC
Q 001245 492 GGWVA-HSSPVIKMAVGAG 509 (1115)
Q Consensus 492 ~~l~g-H~~~V~sva~dg~ 509 (1115)
..+.. +..++..+++-++
T Consensus 296 ~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 296 FCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEeeccCCCCCcceEeccc
Confidence 54433 3445555655443
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1.2e-20 Score=204.03 Aligned_cols=264 Identities=20% Similarity=0.273 Sum_probs=196.2
Q ss_pred eeEEEEEeC--CeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe
Q 001245 134 FLRTIVCTE--EQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1115)
Q Consensus 134 ~l~~l~~~~--~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS 210 (1115)
.+..++.+. ..+++ +.|+.|++||+.++..... ...| ...+.++.+.++++.|++|+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~-~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-------------------LKGH-TGPVRDVAASADGTYLASGS 70 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-------------------EecC-CcceeEEEECCCCCEEEEEc
Confidence 344555542 34444 4599999999987653331 1234 56788999999999999999
Q ss_pred CCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 211 ~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
.||.|++|++.++ +....+.+|...|.+++|+++++ +++++.|+.|++||+.+++....
T Consensus 71 ~~~~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------ 130 (289)
T cd00200 71 SDKTIRLWDLETG--------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT------------ 130 (289)
T ss_pred CCCeEEEEEcCcc--------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE------------
Confidence 9999999999863 34567889999999999999987 46677799999999976543311
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~ 368 (1115)
+..|. ..+.++++.+++..+++++ ++.|++||+++++.+..+..+...+..+
T Consensus 131 -------~~~~~----------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~---------- 183 (289)
T cd00200 131 -------LRGHT----------DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV---------- 183 (289)
T ss_pred -------eccCC----------CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE----------
Confidence 11222 4577888888888888877 8899999999988888776544333333
Q ss_pred cccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEEEecc-----cccccCCCceEEEEEcCCCcE-EEEeCCCe
Q 001245 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAK-----GGFGDDNRRTEALTTSIDGMI-WTGGANGL 441 (1115)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~l-aSGS~Dgt 441 (1115)
.+.+++..+++++ .+.+..|+.. ..+..|...+.++++++++.+ ++++.|+.
T Consensus 184 ---------------------~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 242 (289)
T cd00200 184 ---------------------AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242 (289)
T ss_pred ---------------------EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc
Confidence 3344443444444 3345666542 233466778999999999875 56666999
Q ss_pred EEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 442 LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 442 IklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
|++||+ +++++..+.+|...|.+++ ++|.+|++++.||.|++||
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999 6899999999999999998 6789999999999999996
No 61
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.89 E-value=2.2e-21 Score=216.87 Aligned_cols=268 Identities=14% Similarity=0.219 Sum_probs=208.2
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
++.++| +.||-+|+|+.. |....+ + ..| .+||.+|.++..|.+|+||+.|+|+.+||
T Consensus 246 ~G~~LatG~~~G~~riw~~~-G~l~~t-----------------l--~~H-kgPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKD-GNLIST-----------------L--GQH-KGPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred CCCeEEEeecCcEEEEEecC-chhhhh-----------------h--hcc-CCceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 455555 479999999976 433332 1 246 78999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~ 299 (1115)
.-++. ..+.+.-|..+-..|.+-.+.++++++.|+.|+|..+....+. ..+.+
T Consensus 305 ~~~g~--------~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~-------------------~t~~G 357 (524)
T KOG0273|consen 305 AHTGT--------VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV-------------------KTFIG 357 (524)
T ss_pred ccCce--------EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcc-------------------eeeec
Confidence 87643 3456777888867788888778999999999999988653332 22344
Q ss_pred cceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEe
Q 001245 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1115)
Q Consensus 300 h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~ 378 (1115)
|. ++|.++-..+.+.+|+|++ |+|++||....+.+.+.|..|.+-+.....+|.
T Consensus 358 H~----------g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~--------------- 412 (524)
T KOG0273|consen 358 HH----------GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT--------------- 412 (524)
T ss_pred cc----------CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC---------------
Confidence 55 7889999999999999988 589999998887777777666654221111111
Q ss_pred cCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcC-CCCeeEEee
Q 001245 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQ 456 (1115)
Q Consensus 379 ~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~-tG~~l~tl~ 456 (1115)
|....+ +.++ .+++++.|++|++||+ .|.++.+|.
T Consensus 413 ----------------------------------g~v~~n---------~~~~~~l~sas~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 413 ----------------------------------GPVTSN---------PNMNLMLASASFDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred ----------------------------------CCccCC---------CcCCceEEEeecCCeEEEEEccCCceeEeec
Confidence 000000 1122 3789999999999999 899999999
Q ss_pred cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 457 YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 457 gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
.|+.+|++|+ |+|++||+|+.||.|.+|+.. |++.++..+- +.|..|.+ +|.+|..+-.|+.+.+-|++
T Consensus 450 kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999 689999999999999999987 8888888764 55888874 78899888899999998874
No 62
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=3e-21 Score=206.11 Aligned_cols=272 Identities=17% Similarity=0.196 Sum_probs=200.6
Q ss_pred ceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 132 GCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 132 ~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
...+.+..++ ++.++| |.|..|-+|++-. . .+.+ ....+| .++|+-+.+..|+..|+|
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-d----------------ceN~-~~lkgH-sgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-D----------------CENF-WVLKGH-SGAVMELHGMRDGSHILS 107 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccc-c----------------ccce-eeeccc-cceeEeeeeccCCCEEEE
Confidence 3455566666 667777 6899999999642 1 1111 122367 899999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 209 GS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
.|.|.+++.||+++|+ .+..+++|.+-|+++.-+.-|. | .|||.|||+||||+.+.+++.++.
T Consensus 108 ~gtDk~v~~wD~~tG~--------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------- 172 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETGK--------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------- 172 (338)
T ss_pred ecCCceEEEEecccce--------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------
Confidence 9999999999999854 4678899999999999665564 4 699999999999998755442210
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
...++.++++...+..+.+++ |+.|++||++.++.+.++++|...++.+..++.+.
T Consensus 173 -----------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 173 -----------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred -----------------------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC
Confidence 013456677777788888887 78899999999999999999999888888877655
Q ss_pred cccc--ccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC--Cce--EEEEEcCCCc-EEEEeC
Q 001245 366 FAME--DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN--RRT--EALTTSIDGM-IWTGGA 438 (1115)
Q Consensus 366 ~~~~--~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~--~~V--~aVa~S~Dg~-laSGS~ 438 (1115)
.... .+..+++|.-......+..+.. |.+|. -.. ...++||+++ +.+|+.
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~i-----------------------f~g~~hnfeknlL~cswsp~~~~i~ags~ 286 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKI-----------------------FQGHIHNFEKNLLKCSWSPNGTKITAGSA 286 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEE-----------------------eecchhhhhhhcceeeccCCCCccccccc
Confidence 5432 2223344432211111111111 22221 112 2356889987 778999
Q ss_pred CCeEEEEcCCC-CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEE
Q 001245 439 NGLLLQWDPNG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 439 DgtIklWD~tG-~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrl 483 (1115)
|+.+.+||.++ .++..+.||.+.|+++. |.-..|.++++|.+|.+
T Consensus 287 dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 287 DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999965 78999999999999999 67899999999999986
No 63
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=3.3e-21 Score=230.96 Aligned_cols=247 Identities=14% Similarity=0.132 Sum_probs=175.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC-----CCCCCcceEEeecCCCCEEEEEEeC-CCc-EEEEeCCCcEE
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD-----SDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIK 265 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~-----~~~~~~~~~~l~GH~~~V~sVafSp-dG~-L~SgS~DgtIr 265 (1115)
.|.+.+.++++..+++++.+..+..|+..++.+- .+........+.||.++|++|+|+| ++. |+|||.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 4566777788888999999999999987653210 0000011235789999999999999 776 89999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEeec-CCeEEEEEcCCcc
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
+||+.+........ .....+.+|. ..|.++++.+.+ ..|++++ |++|+|||+.+++
T Consensus 102 IWdi~~~~~~~~~~------------~~l~~L~gH~----------~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 102 GWGIPEEGLTQNIS------------DPIVHLQGHT----------KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EEecCCCccccccC------------cceEEecCCC----------CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 99997642110000 0112245565 678888888864 5777766 7899999998877
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
.+..+. +|...|.
T Consensus 160 ~~~~l~-------------------------------------------------------------------~h~~~V~ 172 (493)
T PTZ00421 160 AVEVIK-------------------------------------------------------------------CHSDQIT 172 (493)
T ss_pred EEEEEc-------------------------------------------------------------------CCCCceE
Confidence 654432 2344577
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEE-EEE--ecCCEEEeee----cccEEEEEeCC--Ccccc
Q 001245 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-CLC--TFGSQIWVGY----MNGIVQVLDLE--GNLLG 492 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~-sla--~dG~~LaSGs----~DGtIrlWD~~--G~ll~ 492 (1115)
++++++||. |++|+.|++|++||+ +|+++.++.+|.+.+. .+. +++.+|++++ .|++|++||+. .+.+.
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 888999987 789999999999999 8999999999987543 222 5666666543 58999999986 34455
Q ss_pred ccccccC-CEEEEE--ecCCEEEeec-CCCceEEeeecCC
Q 001245 493 GWVAHSS-PVIKMA--VGAGYIFTLA-NHGGIRGWNVTSP 528 (1115)
Q Consensus 493 ~l~gH~~-~V~sva--~dg~~laSgS-~DgtIRlWdl~~p 528 (1115)
....|.. .+.... .+++++++++ .|++||+||+...
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 4444443 333333 4788898887 5999999999763
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=3e-21 Score=224.99 Aligned_cols=280 Identities=15% Similarity=0.207 Sum_probs=215.3
Q ss_pred ccceeeEEEEEeCC-eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 130 QIGCFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 130 ~~~~~l~~l~~~~~-~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
.+...+|+|..+++ .+.+ |+.+++++||..+.+|.++ +. .+-++|..|=|.+++|+
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT---------------------i~-~~y~l~~~Fvpgd~~Iv 428 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT---------------------IT-CGYILASKFVPGDRYIV 428 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEE---------------------ec-cccEEEEEecCCCceEE
Confidence 46678888887744 4444 5778999999999999885 22 45788999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
+|.+.|.+-++|+.... .+-+.++|.++|++|+.+||++ +++||.|+|||.||.... .. ++....
T Consensus 429 ~G~k~Gel~vfdlaS~~--------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~-----~~-~~gt~~ 494 (888)
T KOG0306|consen 429 LGTKNGELQVFDLASAS--------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV-----VS-VPGTQK 494 (888)
T ss_pred EeccCCceEEEEeehhh--------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE-----ec-cCcccc
Confidence 99999999999998632 2335679999999999999998 999999999999997421 01 000000
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
..+.+. |... .-...++.|+..+|++..++.+ -|.|++|+-+.|-+.--+|-+|.-++.+
T Consensus 495 ------k~lsl~-~~rt----Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s-------- 555 (888)
T KOG0306|consen 495 ------KVLSLK-HTRT----LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS-------- 555 (888)
T ss_pred ------eeeeec-cceE----EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE--------
Confidence 001111 1111 1123688999999998887654 4899999999887766666666555443
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCCCceEEEEEcCCCc-EEEEeC
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTGGA 438 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-laSGS~ 438 (1115)
+..++++..+++|++| .|+.|-.+ ..|..|...|.+|.|-|+.. ++|+|.
T Consensus 556 -----------------------mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK 612 (888)
T KOG0306|consen 556 -----------------------MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK 612 (888)
T ss_pred -----------------------EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecC
Confidence 3455566677888877 47777443 35678999999999999877 689999
Q ss_pred CCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
|+.||.||. .=++++++.+|...|+|++ |+|.+++|+|.|.+||+|..+
T Consensus 613 D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 613 DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 999999999 6799999999999999999 899999999999999999854
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3e-21 Score=227.40 Aligned_cols=306 Identities=17% Similarity=0.170 Sum_probs=215.2
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~ 228 (1115)
..|.|++||--=+.++.. |- -| .+||..+.|-|++-+++||+.|-+||+|+..+.
T Consensus 29 HsG~IQlWDYRM~tli~r-----------------Fd--eH-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----- 83 (1202)
T KOG0292|consen 29 HSGVIQLWDYRMGTLIDR-----------------FD--EH-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----- 83 (1202)
T ss_pred cCceeeeehhhhhhHHhh-----------------hh--cc-CCccceeeecCCCCeEEecCCccEEEEEecccc-----
Confidence 568999999766655543 22 36 789999999999999999999999999999874
Q ss_pred CCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceeccee
Q 001245 229 DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (1115)
Q Consensus 229 ~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~ 307 (1115)
+++.+|.||-+.|..+.|.+.-- ++|+|+|-|||||+|.+..|+- .+.||.
T Consensus 84 ---rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia-------------------vltGHn------ 135 (1202)
T KOG0292|consen 84 ---RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA-------------------VLTGHN------ 135 (1202)
T ss_pred ---eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE-------------------EEecCc------
Confidence 44678999999999999998643 8899999999999999877652 245665
Q ss_pred eeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccC-CCCccccccceEEEEecCCCCcc
Q 001245 308 SILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKA 385 (1115)
Q Consensus 308 ~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~ 385 (1115)
..|.|-.+-|....|+|++ |+||||||+.. -.-+...+. .....+.... ..+.....+.-++.+ -.+++++
T Consensus 136 ----HYVMcAqFhptEDlIVSaSLDQTVRVWDisG-LRkk~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~V-LEGHDRG 208 (1202)
T KOG0292|consen 136 ----HYVMCAQFHPTEDLIVSASLDQTVRVWDISG-LRKKNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKHV-LEGHDRG 208 (1202)
T ss_pred ----eEEEeeccCCccceEEEecccceEEEEeecc-hhccCCCCC-CchhhhhccccchhhcCCcCeeeeee-ecccccc
Confidence 4566777777788899988 89999999742 222222111 1100000000 011111111112221 2345566
Q ss_pred ceeeeeeccccceEEeccCc-EEEEec-------ccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEe
Q 001245 386 QSSFGFFQRSRNAIMGAADA-VRRVAA-------KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF 455 (1115)
Q Consensus 386 ~~~v~f~~~~~~~~~Gs~d~-v~~~~~-------~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl 455 (1115)
++-.+|.+.--.+++|++|. |++|.- ..++.+|.+.|.++.|.|... |+|.|+|++|++||+ .-+.+++|
T Consensus 209 VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 209 VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 77778888877889999885 555532 257889999999999998755 789999999999999 57899999
Q ss_pred ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEEecCCEEEeecCCCceEEeeecC
Q 001245 456 QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 456 ~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
....+.-+.|+ |.+.++|.|-.+| +.|+-++-+. +. .+.+++.|+=.- |..||-.|+.+
T Consensus 289 rrendRFW~laahP~lNLfAAgHDsG-m~VFkleREr---------pa--~~v~~n~LfYvk-d~~i~~~d~~t 349 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELNLFAAGHDSG-MIVFKLERER---------PA--YAVNGNGLFYVK-DRFIRSYDLRT 349 (1202)
T ss_pred eccCCeEEEEEecCCcceeeeecCCc-eEEEEEcccC---------ce--EEEcCCEEEEEc-cceEEeeeccc
Confidence 87777788888 7788888877666 5566654211 12 233444444332 77888888765
No 66
>PTZ00420 coronin; Provisional
Probab=99.88 E-value=6.3e-21 Score=229.99 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=158.9
Q ss_pred eccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtI 264 (1115)
+| .++|++++|+|+ +.+|||||.||+||+||+.++.............+.+|.+.|++|+|+|++. |+|||.|++|
T Consensus 72 gH-~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 72 GH-TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred CC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 46 789999999997 7899999999999999997521100000123456899999999999999986 4799999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
+|||+.++.....+ . |. ..+.++++++++..+++++ |++|+|||+++++
T Consensus 151 rIWDl~tg~~~~~i-------------------~-~~----------~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 151 NIWDIENEKRAFQI-------------------N-MP----------KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred EEEECCCCcEEEEE-------------------e-cC----------CcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 99999876543111 0 11 3567888888888888765 7899999999999
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
++.++.+|..... .+ .+.
T Consensus 201 ~i~tl~gH~g~~~-------------------------------------------------s~-------------~v~ 218 (568)
T PTZ00420 201 IASSFHIHDGGKN-------------------------------------------------TK-------------NIW 218 (568)
T ss_pred EEEEEecccCCce-------------------------------------------------eE-------------EEE
Confidence 8887755432200 00 011
Q ss_pred EEEEcCCC-cEEEEeCCC----eEEEEcC-C-CCeeEEeecCC--CcEEEEE--ecCCEEEeeecccEEEEEeCC-Cc--
Q 001245 424 ALTTSIDG-MIWTGGANG----LLLQWDP-N-GNRLQDFQYLP--FAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN-- 489 (1115)
Q Consensus 424 aVa~S~Dg-~laSGS~Dg----tIklWD~-t-G~~l~tl~gH~--~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~-- 489 (1115)
...+++++ .|+|++.|+ +|+|||+ + +++++++..+. +.+.... .+|.++++|+.|++|++|++. +.
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~ 298 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIR 298 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEE
Confidence 12345554 477777664 7999999 3 67777665433 3333333 358999999999999999986 42
Q ss_pred cccccccccCCEEEEEecCC
Q 001245 490 LLGGWVAHSSPVIKMAVGAG 509 (1115)
Q Consensus 490 ll~~l~gH~~~V~sva~dg~ 509 (1115)
.+..+. |..++.++++-++
T Consensus 299 ~l~~~~-s~~p~~g~~f~Pk 317 (568)
T PTZ00420 299 KVNEYK-SCSPFRSFGFLPK 317 (568)
T ss_pred eecccc-cCCCccceEEccc
Confidence 233343 5566666765444
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.4e-22 Score=228.46 Aligned_cols=279 Identities=17% Similarity=0.274 Sum_probs=206.1
Q ss_pred CCe-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCcee--eeccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001245 142 EEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (1115)
Q Consensus 142 ~~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~--s~~G~~~V~~la~s~dg~~LaSGS~DgtIrl 217 (1115)
+++ |+. |.|+.||+|++..-.... ..|+.. ..| +.||+.++.-.+|+.|+|+|.|.||++
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~---------------s~~~~asme~H-sDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEP---------------STPYIASMEHH-SDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCc---------------ccchhhhhhhh-HhHHhhHHhhcCCCceEEecCCceEEE
Confidence 445 776 689999999976443211 112221 146 889999999999999999999999999
Q ss_pred EECCCCCCCCCCCCcceEEeecCCCCEEEEEE-eCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeee
Q 001245 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l~GH~~~V~sVaf-SpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~ 295 (1115)
|+...+. .-+..+++.|++.|.||++ -++.. ++|||.|+.|.|||++++...+..+.+
T Consensus 100 W~~~~~~------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-------------- 159 (735)
T KOG0308|consen 100 WNAHKDN------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-------------- 159 (735)
T ss_pred eecccCc------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc--------------
Confidence 9987531 1235578899999999999 66666 589999999999999986432111110
Q ss_pred eecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceE
Q 001245 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1115)
Q Consensus 296 ~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~ 374 (1115)
..+++.....+...+-.+|..+.+..+++++ .+.+++||.+|++.+-.
T Consensus 160 ----~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk--------------------------- 208 (735)
T KOG0308|consen 160 ----NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK--------------------------- 208 (735)
T ss_pred ----ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---------------------------
Confidence 1111222223446677888877776777766 47799999887664321
Q ss_pred EEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCee
Q 001245 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (1115)
Q Consensus 375 ~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l 452 (1115)
+.+|+..|.++..++||+ ++|||.||||||||+ ..+|+
T Consensus 209 ----------------------------------------LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 209 ----------------------------------------LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred ----------------------------------------eeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 346777888899999997 999999999999999 67899
Q ss_pred EEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC-ccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 453 QDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 453 ~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G-~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.++..|...|+++. ++=+.+++|+.||.|..=|+.. +...-+..-..+|..+.. +.+-+..+..|+.|+-|....
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 99999999999999 5678999999999999999864 222222334456777664 344558888999999998654
No 68
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=9.1e-22 Score=228.22 Aligned_cols=231 Identities=20% Similarity=0.309 Sum_probs=185.5
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEE-EEEeC-C-CcEEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS-LCISS-Y-GDLWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~s-VafSp-d-G~L~SgS~DgtI 264 (1115)
+| .+-|..+++-+ +.+++|||+|||+|+|+-.++.. -+...+++|.+.|.. +++-+ + |+|++|+.|++|
T Consensus 12 gH-~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 12 GH-KSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQY------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred cC-ccchheeEecC-CeEEeecCCCCceeeeeccCccc------ccceecccCcceeeccceeccccCcceEeecccceE
Confidence 44 56676666544 56899999999999999764321 234568899998887 88875 2 358999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
.+|.+.+.... ..|++|. +.|-++.+..++. ++|++ |.|+++|-.. +
T Consensus 84 ~v~~~~~~~P~-------------------~~LkgH~----------snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~ 131 (745)
T KOG0301|consen 84 IVFKLSQAEPL-------------------YTLKGHK----------SNVCSLSIGEDGT-LISGSWDSTAKVWRIG--E 131 (745)
T ss_pred EEEecCCCCch-------------------hhhhccc----------cceeeeecCCcCc-eEecccccceEEecch--h
Confidence 99999876554 2356776 4555665555554 66766 6788888741 1
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
+.- .+.+|...|.
T Consensus 132 l~~-------------------------------------------------------------------~l~gH~asVW 144 (745)
T KOG0301|consen 132 LVY-------------------------------------------------------------------SLQGHTASVW 144 (745)
T ss_pred hhc-------------------------------------------------------------------ccCCcchhee
Confidence 111 1457778888
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE-ecCCEEEeeecccEEEEEeCCCccccccccccCCEE
Q 001245 424 ALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC-TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVI 502 (1115)
Q Consensus 424 aVa~S~Dg~laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla-~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~ 502 (1115)
+|+.-|+++++|||+|++||+|.. |+++++|.||++-|..|+ -++..++|++.||.|++||++|.++..+.||+.-|+
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY 223 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY 223 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEE
Confidence 888888889999999999999987 899999999999999999 578889999999999999999999999999999999
Q ss_pred EEE--ecCCEEEeecCCCceEEeeec
Q 001245 503 KMA--VGAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 503 sva--~dg~~laSgS~DgtIRlWdl~ 526 (1115)
+++ .+++.++|+|.|+|+|+|+..
T Consensus 224 sis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 224 SISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEecCCCCeEEEecCCceEEEeecC
Confidence 987 478899999999999999954
No 69
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.88 E-value=3.6e-22 Score=220.21 Aligned_cols=249 Identities=17% Similarity=0.266 Sum_probs=182.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
|.|.-|++|++....+- +..+..| .++++.+.|+++++.+.+++.|+.+|+|+++..
T Consensus 194 g~Dr~Ik~W~v~~~k~~-------------------~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--- 251 (459)
T KOG0288|consen 194 GSDRIIKLWNVLGEKSE-------------------LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL--- 251 (459)
T ss_pred chhhhhhhhhcccchhh-------------------hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---
Confidence 78999999998755421 1222334 678999999999999999999999999999863
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecc
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~ 305 (1115)
....+|.||++.|+++.|.-... ++|||.|.|||+||+....|+.+.-+ .
T Consensus 252 -----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----------------~-------- 302 (459)
T KOG0288|consen 252 -----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----------------G-------- 302 (459)
T ss_pred -----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc----------------c--------
Confidence 45678999999999999987654 89999999999999988766532210 0
Q ss_pred eeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCc
Q 001245 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1115)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (1115)
+.+..++.+ ...+.|+. |++|+.||++++.+..+...+|
T Consensus 303 ------S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-------------------------------- 342 (459)
T KOG0288|consen 303 ------SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-------------------------------- 342 (459)
T ss_pred ------ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--------------------------------
Confidence 111122222 22344443 6889999999888776543322
Q ss_pred cceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCC---
Q 001245 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP--- 459 (1115)
Q Consensus 385 ~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~--- 459 (1115)
.|.+|..+.+|. |.+.+.|.++++.|+ +-+..+++.+-.
T Consensus 343 ------------------------------------~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 343 ------------------------------------RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred ------------------------------------ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 345566677776 777888999999999 555566655311
Q ss_pred -CcEEE--EEecCCEEEeeecccEEEEEeCC-CccccccccccC--CEEEEEe--cCCEEEeecCCCceEEe
Q 001245 460 -FAVQC--LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 460 -~~V~s--la~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~--~V~sva~--dg~~laSgS~DgtIRlW 523 (1115)
..++. +.|+|.|+|+||.||.|+||++. |++-..+...+. .|+++++ .|+++++++.++.+++|
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 11333 33889999999999999999986 777776665444 4899886 57889999999999999
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=7.4e-22 Score=210.88 Aligned_cols=242 Identities=20% Similarity=0.303 Sum_probs=191.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
.+-|-|..|||||++|+|||.||-|.+||..+|+....-.....-.|.-|.++|.||.||.|.+ |+|||.||.||||.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 5678899999999999999999999999998765310000000113445789999999999998 799999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
+||.|+..+. ++|. .-|.|+.++.++..+.|++ |.+++|--+.+|++++.|
T Consensus 293 ~tG~ClRrFd------------------rAHt----------kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 293 ETGQCLRRFD------------------RAHT----------KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred ecchHHHHhh------------------hhhc----------cCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence 9998873321 3454 4577888998988888887 689999999999998877
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
.+|+.. |+...|+
T Consensus 345 rGHsSy-------------------------------------------------------------------vn~a~ft 357 (508)
T KOG0275|consen 345 RGHSSY-------------------------------------------------------------------VNEATFT 357 (508)
T ss_pred cCcccc-------------------------------------------------------------------ccceEEc
Confidence 665544 3334566
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC--CCcEEEEE--e-cCCEEEeeecccEEEEEeCCCccccccccc----
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFAVQCLC--T-FGSQIWVGYMNGIVQVLDLEGNLLGGWVAH---- 497 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH--~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH---- 497 (1115)
+||. ++|+|.||+||+|+. +++|++||+.. ..+|++|- | ....++++....+|.|-++.|+.+++|..-
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREG 437 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccC
Confidence 7776 899999999999999 89999999853 34788887 3 457899999999999999999999988632
Q ss_pred cCCEEE-EEecCCEEEeecCCCceEEeeecC
Q 001245 498 SSPVIK-MAVGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 498 ~~~V~s-va~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.+.|.+ +.+-|.+++..+.|+...-+.+.+
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 235665 457899999999999988888766
No 71
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=2.3e-20 Score=225.19 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=162.0
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC-Cc-EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+|+.++.|++|++... ..+..+.||.++|.+|+|+|+ +. |+|||.|++|||||+.+.........
T Consensus 49 gGG~~gvI~L~~~~r~--------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~----- 115 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK--------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK----- 115 (568)
T ss_pred CCCceeEEEeeecCCC--------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-----
Confidence 4778999999998652 346688999999999999997 55 79999999999999976321100000
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEE-Eeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v-~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~ 363 (1115)
.....+.+|. ..|.++++.+.+..+ ++++ |++|+|||+++++.+..+.
T Consensus 116 ------~p~~~L~gH~----------~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-------------- 165 (568)
T PTZ00420 116 ------DPQCILKGHK----------KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-------------- 165 (568)
T ss_pred ------cceEEeecCC----------CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--------------
Confidence 0001234454 678889998877654 5654 7999999998877543321
Q ss_pred CCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeE
Q 001245 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLL 442 (1115)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtI 442 (1115)
+...|.+++|+++|. |++++.|++|
T Consensus 166 ------------------------------------------------------~~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 166 ------------------------------------------------------MPKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred ------------------------------------------------------cCCcEEEEEECCCCCEEEEEecCCEE
Confidence 112366788999998 6788899999
Q ss_pred EEEcC-CCCeeEEeecCCCcEEEEE-------ecCCEEEeeeccc----EEEEEeCC--Ccccccccc--ccCCEEEEE-
Q 001245 443 LQWDP-NGNRLQDFQYLPFAVQCLC-------TFGSQIWVGYMNG----IVQVLDLE--GNLLGGWVA--HSSPVIKMA- 505 (1115)
Q Consensus 443 klWD~-tG~~l~tl~gH~~~V~sla-------~dG~~LaSGs~DG----tIrlWD~~--G~ll~~l~g--H~~~V~sva- 505 (1115)
+|||+ +|++++++.+|.+.+.+.+ +++.+|++++.|+ +|+|||+. ++.+..+.. +.+.+....
T Consensus 192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 99999 8999999999988654322 4778999988764 89999986 556655433 333333332
Q ss_pred e-cCCEEEeecCCCceEEeeecC
Q 001245 506 V-GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 506 ~-dg~~laSgS~DgtIRlWdl~~ 527 (1115)
. +|.++++|+.|++||+|++..
T Consensus 272 ~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 272 ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCCEEEEEECCCeEEEEEccC
Confidence 2 478899999999999999864
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=202.58 Aligned_cols=232 Identities=19% Similarity=0.229 Sum_probs=177.9
Q ss_pred ceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC---cEEEEeC
Q 001245 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSE 260 (1115)
Q Consensus 184 ~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG---~L~SgS~ 260 (1115)
|..+-| .+++.|||+ +|.++||||.|-||+++|+... .+...+-.|.+.|+++.|.++- .|+||++
T Consensus 37 F~~~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 37 FAFSAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccc-ccceeEEEe--cceeEeccCCCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeeecC
Confidence 444567 889999999 5789999999999999999863 3455677899999999999886 4999999
Q ss_pred CCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEc
Q 001245 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (1115)
Q Consensus 261 DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~ 339 (1115)
||.|.+|+....++.- .+++|. +.|..++.-|.+....+.+ |+.+++||+
T Consensus 106 DG~i~iw~~~~W~~~~-------------------slK~H~----------~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLK-------------------SLKAHK----------GQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred CCcEEEEEcCCeEEee-------------------eecccc----------cccceeEecCCCceEEEEcCCceeeeehh
Confidence 9999999997765442 235565 5677888888877766754 789999999
Q ss_pred CCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccc--c--c
Q 001245 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--G--F 415 (1115)
Q Consensus 340 ~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g--~--l 415 (1115)
.+|+.-.+++..... ..+.|++.+...+++..+.+-.+.... . .
T Consensus 157 V~Gr~a~v~~L~~~a--------------------------------t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 157 VRGRVAFVLNLKNKA--------------------------------TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE 204 (362)
T ss_pred hcCccceeeccCCcc--------------------------------eeeEEcCCCCEEEEEeccEEEEEecccHhHhhh
Confidence 998865554321111 123455555555555566666555421 1 1
Q ss_pred ccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE----ecCCEEEeeecccEEEEEeCC
Q 001245 416 GDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC----TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla----~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.....++.++.+-..+.+++|..|+.|++||. ++.++..|.+|...|.+++ +++.+|+++|+||.|+|||++
T Consensus 205 i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 205 IENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred hhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 12234567777878888999999999999999 5999999999999999998 467899999999999999986
No 73
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=205.77 Aligned_cols=272 Identities=16% Similarity=0.201 Sum_probs=209.6
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.| +.+|.|++.+|++.++|||+.|...-+|+..++ .....+.||+++|+++.||.||. |+||..+|.|+|
T Consensus 62 ~H-~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 62 KH-TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred hc-CCceEEEEeCCCCceEEecCCCceEEEEEccCC--------cceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 47 889999999999999999999999999999874 34667899999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
|...++.....+.. .-.++..|...+-...++.++ |+.+-.|.+.++...
T Consensus 133 ~~~stg~~~~~~~~-----------------------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQ-----------------------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred EEcccCceEEEeec-----------------------------ccCceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence 99988654322110 014455555555444444443 688999999998889
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEeccccccc------C
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGGFGD------D 418 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g~l~~------h 418 (1115)
++|.+|+...++- .|.++++++++|..|+ ++.|+.+..-.. .
T Consensus 184 kv~~Gh~~~ct~G-------------------------------~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 184 KVMSGHNSPCTCG-------------------------------EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred eEecCCCCCcccc-------------------------------cccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 9998877663322 4556677788887765 566665421111 1
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEee--------cCCCcEEEEE--e---cCCEEEeeecccEEEE
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ--------YLPFAVQCLC--T---FGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~--------gH~~~V~sla--~---dG~~LaSGs~DGtIrl 483 (1115)
.....++.++.++. +.+|+.++.+++=.. +|+.+.-+. .|...+.||. + .=.+.|+|+.||+|-|
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence 23456778888877 678999999999988 888877666 3555566666 2 2468899999999999
Q ss_pred EeCCCccccccccccCCEEEEEecC-CEEEeecCCCceEEeeecCC
Q 001245 484 LDLEGNLLGGWVAHSSPVIKMAVGA-GYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 484 WD~~G~ll~~l~gH~~~V~sva~dg-~~laSgS~DgtIRlWdl~~p 528 (1115)
||+....++...-|...|+.+.+.+ .+|++++.||.||.||.+++
T Consensus 313 yD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 313 YDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred EecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc
Confidence 9998666677778999999999876 79999999999999999874
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=6.4e-21 Score=198.61 Aligned_cols=279 Identities=18% Similarity=0.200 Sum_probs=205.3
Q ss_pred CCCccccccceeeEEEEEe----CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEE
Q 001245 123 PHPLRETQIGCFLRTIVCT----EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMC 196 (1115)
Q Consensus 123 ~~~l~~~~~~~~l~~l~~~----~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~ 196 (1115)
..||....+.+.+-.|+.+ .+-++. +-|+..-+-+=+||.-+++ .+ +| .+.|..
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt------------------fe-gh-kgavw~ 64 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT------------------FE-GH-KGAVWS 64 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe------------------ee-cc-Ccceee
Confidence 3455555566666666665 333332 4566555544344333322 22 56 789999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCccee
Q 001245 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 197 la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~ 275 (1115)
..++.+..+-|||+.|-|.|+||.-+| .++.+| .|+..|.+++|+.|.. |++|+.++.+||+|++..+.-
T Consensus 65 ~~l~~na~~aasaaadftakvw~a~tg--------delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 65 ATLNKNATRAASAAADFTAKVWDAVTG--------DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred eecCchhhhhhhhcccchhhhhhhhhh--------hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 999999999999999999999998763 345555 5999999999999986 999999999999999764321
Q ss_pred eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe-ecCCeEEEEEcCCccEEEEEecCCce
Q 001245 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQI 354 (1115)
Q Consensus 276 l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S-~sd~tI~lWD~~tg~ll~tl~~~~~~ 354 (1115)
...+.+|. +.++.+.+......+.| +.+++||+||.+||+.++++.-..
T Consensus 136 ------------------p~E~~ght----------g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s-- 185 (334)
T KOG0278|consen 136 ------------------PKEISGHT----------GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS-- 185 (334)
T ss_pred ------------------chhhcCCC----------CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCC--
Confidence 12234554 55666777666666666 457999999999999888773211
Q ss_pred eeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEE
Q 001245 355 ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW 434 (1115)
Q Consensus 355 ~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~la 434 (1115)
.|.++-+++||.++
T Consensus 186 ------------------------------------------------------------------~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 186 ------------------------------------------------------------------PVTSLEVSQDGRIL 199 (334)
T ss_pred ------------------------------------------------------------------CCcceeeccCCCEE
Confidence 34456678888888
Q ss_pred EEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccc-ccccCCEEEEE--ec
Q 001245 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMA--VG 507 (1115)
Q Consensus 435 SGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l-~gH~~~V~sva--~d 507 (1115)
+-..-+.|++||. +=.++..++. ...|.+-. |+-..+++|++|..++.+|.. |+-+..+ +||-++|.||. +|
T Consensus 200 Tia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 200 TIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred EEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC
Confidence 7777789999999 5566666553 33455433 788899999999999999975 8777776 89999999997 48
Q ss_pred CCEEEeecCCCceEEeeecC
Q 001245 508 AGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 508 g~~laSgS~DgtIRlWdl~~ 527 (1115)
|..-+|||.|||||||...+
T Consensus 279 GE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CceeeccCCCceEEEEEecC
Confidence 89999999999999998754
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.86 E-value=3.1e-21 Score=200.90 Aligned_cols=241 Identities=17% Similarity=0.274 Sum_probs=191.8
Q ss_pred CCccccccceeeEEEEEeCCeEEE-------------eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc
Q 001245 124 HPLRETQIGCFLRTIVCTEEQLWA-------------GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG 190 (1115)
Q Consensus 124 ~~l~~~~~~~~l~~l~~~~~~l~a-------------g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G 190 (1115)
|-||.-+.|-++-++.+|.+.+|. ++|=|.||||.-+|..+.. | + |
T Consensus 41 pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-----------------f-~--h- 99 (334)
T KOG0278|consen 41 PMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-----------------F-E--H- 99 (334)
T ss_pred chhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh-----------------h-h--h-
Confidence 456778899999999999888884 4788999999999887764 2 2 2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
..-|.+++|+.|...|.||+.+..+|++|++... .+...+.||.+.|..+.|....+ ++|++.|+|||+||.
T Consensus 100 khivk~~af~~ds~~lltgg~ekllrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 100 KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred hheeeeEEecccchhhhccchHHHhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 3378999999999999999999999999998522 23446789999999999987665 889999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEe
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~ 349 (1115)
.|+....++. ....|+.+-.++++..|..+...+|+.||+.+-.+|+.+.
T Consensus 173 rTgt~v~sL~------------------------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 173 RTGTEVQSLE------------------------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred ccCcEEEEEe------------------------------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc
Confidence 9876542210 1245667777888888877777899999999888777663
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
....+ ++-..+|
T Consensus 223 ~P~nV--------------------------------------------------------------------~SASL~P 234 (334)
T KOG0278|consen 223 MPCNV--------------------------------------------------------------------ESASLHP 234 (334)
T ss_pred Ccccc--------------------------------------------------------------------ccccccC
Confidence 22221 1122334
Q ss_pred CC-cEEEEeCCCeEEEEcC-CCCeeEEe-ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccc
Q 001245 430 DG-MIWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNL 490 (1115)
Q Consensus 430 Dg-~laSGS~DgtIklWD~-tG~~l~tl-~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~l 490 (1115)
+. .++.|++|..+..+|. +|+.+..+ ++|.++|.||. |||..-|+||.|||||||.+. ++.
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 43 4688999999999999 89999886 89999999998 899999999999999999976 543
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.86 E-value=9.3e-21 Score=202.14 Aligned_cols=213 Identities=15% Similarity=0.161 Sum_probs=153.1
Q ss_pred eeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC------CC-C-CCC-CCC-cceEEeecCCCCEEEEEEeCCCc-E
Q 001245 187 SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA------RL-L-DSD-DGF-GEVLSWQAHRGPVLSLCISSYGD-L 255 (1115)
Q Consensus 187 s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~------~~-~-~~~-~~~-~~~~~l~GH~~~V~sVafSpdG~-L 255 (1115)
+.| .+++.|.+|++||.++||||.|-.||+.|++. -. . ++. ... -.+++|-.|.+.|++|.|.|... |
T Consensus 109 t~H-K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 109 TSH-KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred eec-ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheE
Confidence 457 78999999999999999999999999999861 00 0 011 111 23568889999999999999877 7
Q ss_pred EEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeE
Q 001245 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSF 334 (1115)
Q Consensus 256 ~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI 334 (1115)
+|||.|+|||++|....... +++.... -...|+++.+.|.|..|..+.+ .++
T Consensus 188 iS~srD~tvKlFDfsK~saK----------------------rA~K~~q-----d~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAK----------------------RAFKVFQ-----DTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred EeccCCCeEEEEecccHHHH----------------------HHHHHhh-----ccceeeeEeecCCCceEEEecCCCce
Confidence 89999999999998652111 1111000 1146888889999998888876 589
Q ss_pred EEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccc
Q 001245 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (1115)
Q Consensus 335 ~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~ 414 (1115)
+|||+.|-+|.-.-++
T Consensus 241 rlYdv~T~QcfvsanP---------------------------------------------------------------- 256 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANP---------------------------------------------------------------- 256 (430)
T ss_pred eEEeccceeEeeecCc----------------------------------------------------------------
Confidence 9999987665321111
Q ss_pred cccCCCceEEEEEcCCCcE-EEEeCCCeEEEEcC-CCCeeEEee-cCCCc-EEEEE--ecCCEEEeeecccEEEEEeCC-
Q 001245 415 FGDDNRRTEALTTSIDGMI-WTGGANGLLLQWDP-NGNRLQDFQ-YLPFA-VQCLC--TFGSQIWVGYMNGIVQVLDLE- 487 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~Dg~l-aSGS~DgtIklWD~-tG~~l~tl~-gH~~~-V~sla--~dG~~LaSGs~DGtIrlWD~~- 487 (1115)
-.+|+..|.+|.+|+.|.+ ++||.||.|||||. .++|+.++. +|.++ |.+.. -+|++|.|.+.|.+|+||.+.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 1135566777888888876 68888888888887 888888874 46554 55544 368888888888888888864
Q ss_pred Cccc
Q 001245 488 GNLL 491 (1115)
Q Consensus 488 G~ll 491 (1115)
|+++
T Consensus 337 ~R~l 340 (430)
T KOG0640|consen 337 GRML 340 (430)
T ss_pred CceE
Confidence 5433
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=8.8e-21 Score=206.30 Aligned_cols=271 Identities=16% Similarity=0.289 Sum_probs=187.4
Q ss_pred CCceeeecc-CCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEe
Q 001245 182 APFKESVKG-VSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (1115)
Q Consensus 182 ~~~~~s~~G-~~~V~~la~s~dg-~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS 259 (1115)
.||...+.| ..+|.|+|-.|.- ..+||||.||.||+||++.. .+..++++|.|.|..|+++- +.++|++
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--------~~~~~f~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--------ECIRTFKAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--------hhhheeecccCceeeEEecc-cceEEec
Confidence 355443333 7889999999975 78999999999999999974 34678999999999999998 4589999
Q ss_pred CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEc
Q 001245 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (1115)
Q Consensus 260 ~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~ 339 (1115)
.|+|||.|.++.. ...+ .+.+..+.++..| -.+...+++ ...|.|||.
T Consensus 127 dDKtvK~wk~~~~-p~~t----------ilg~s~~~gIdh~--------------------~~~~~FaTc-Ge~i~IWD~ 174 (433)
T KOG0268|consen 127 DDKTVKQWKIDGP-PLHT----------ILGKSVYLGIDHH--------------------RKNSVFATC-GEQIDIWDE 174 (433)
T ss_pred CCcceeeeeccCC-ccee----------eeccccccccccc--------------------ccccccccc-Cceeeeccc
Confidence 9999999997652 1100 0000111111000 011222232 246899999
Q ss_pred CCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccc-cceEEe-ccCcEEEEecccc---
Q 001245 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS-RNAIMG-AADAVRRVAAKGG--- 414 (1115)
Q Consensus 340 ~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~-~~~~~G-s~d~v~~~~~~g~--- 414 (1115)
..-..++.++-....+.++.|.| .. ..++++ ++.++.+.+....
T Consensus 175 ~R~~Pv~smswG~Dti~svkfNp-------------------------------vETsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 175 QRDNPVSSMSWGADSISSVKFNP-------------------------------VETSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred ccCCccceeecCCCceeEEecCC-------------------------------CcchheeeeccCCceEEEecccCCcc
Confidence 88777777754333323333332 21 123333 3334555443211
Q ss_pred -cccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-C-CCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-
Q 001245 415 -FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE- 487 (1115)
Q Consensus 415 -l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-t-G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~- 487 (1115)
.+--..+.+.|+++|.+. +.+|++|..+..+|+ . -..++...+|.++|.+|. |.|+-++|||.|.+|||+.+.
T Consensus 224 ~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 224 KKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred ceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 111234567899999877 689999999999999 3 578999999999999999 789999999999999999987
Q ss_pred Ccccccccccc---CCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 488 GNLLGGWVAHS---SPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 488 G~ll~~l~gH~---~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
|...... |+ ..|.+|.+ |.++++|||.|+.||+|...
T Consensus 304 ~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 304 GHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred Ccchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 4322111 22 24788874 89999999999999999864
No 78
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.85 E-value=1.7e-20 Score=210.75 Aligned_cols=300 Identities=13% Similarity=0.127 Sum_probs=195.8
Q ss_pred cccccccccccCCCCCCcccccCCCccccccceeeEEEEEe------------CCeEEE--eCCCCEEEEeCCC-Ccccc
Q 001245 101 PMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCT------------EEQLWA--GGENGLRVWNLKE-LYDES 165 (1115)
Q Consensus 101 ~~~~~~~r~~~~~~~p~~~~~~~~~l~~~~~~~~l~~l~~~------------~~~l~a--g~D~tvrvWdl~t-g~~~~ 165 (1115)
-.|.-+-|..+++..+..+.+| |.|.--=.+.+.++.+| ..-|++ |-|+.|+|||+-. +.+++
T Consensus 175 ~~~dyq~r~~l~~P~dv~vnlR--~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr 252 (503)
T KOG0282|consen 175 SLFDYQGRSYLQKPKDVGVNLR--EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR 252 (503)
T ss_pred chhhccccccccCCcccCCccc--cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh
Confidence 3444555666665544544544 33331112233344444 233444 6899999999877 66666
Q ss_pred cccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC-CCE
Q 001245 166 ESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPV 244 (1115)
Q Consensus 166 ~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~-~~V 244 (1115)
+ ..+| ..+|..+.|+++|..+.|+|+|++||+||.++|.+ .. +.|. ..+
T Consensus 253 t-------------------f~gH-~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~--------~~--~f~~~~~~ 302 (503)
T KOG0282|consen 253 T-------------------FKGH-RKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV--------LS--RFHLDKVP 302 (503)
T ss_pred h-------------------hhcc-hhhhhhhhccccCCeeeeeecceeeeeeccccceE--------EE--EEecCCCc
Confidence 4 2357 88999999999999999999999999999998643 33 3453 467
Q ss_pred EEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC
Q 001245 245 LSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS 322 (1115)
Q Consensus 245 ~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~ 322 (1115)
+||.|.||+. +++|..|+.|+.||+.+++...+.. . |- +.+..+.+-+.
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---~----------------hL----------g~i~~i~F~~~ 353 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---R----------------HL----------GAILDITFVDE 353 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---h----------------hh----------hheeeeEEccC
Confidence 9999999994 6899999999999999876442211 1 11 33445556667
Q ss_pred CCEEEeec-CCeEEEEEcCCccEEEEEecCCce-eeEEeccCCCCccccc--cceEEEEecCCCCccceeeeeeccccce
Q 001245 323 RAKVWSAG-FLSFALWDARTRELLKVFNIDGQI-ENRVDMSLLPDFAMED--EFKTKIVTSSKKDKAQSSFGFFQRSRNA 398 (1115)
Q Consensus 323 ~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~-~~~v~~s~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~f~~~~~~~ 398 (1115)
+.+.++++ +++++||+.+.+..++-.....+. .-++..+|........ +..+-+++
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs-------------------- 413 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS-------------------- 413 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe--------------------
Confidence 77777766 589999999888766543221111 0122223322211110 00000010
Q ss_pred EEeccCcEEEEecccccccCCC--ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e-cCCE
Q 001245 399 IMGAADAVRRVAAKGGFGDDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T-FGSQ 471 (1115)
Q Consensus 399 ~~Gs~d~v~~~~~~g~l~~h~~--~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~-dG~~ 471 (1115)
...-.+...+-.|.+|.. --..|.|||||. |+||+.||.+.+||- +.+++..+.+|..++..+. | --+.
T Consensus 414 ----~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 414 ----TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSK 489 (503)
T ss_pred ----cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcce
Confidence 000011111234566643 233477999997 899999999999999 7899999999999998888 3 3579
Q ss_pred EEeeecccEEEEEe
Q 001245 472 IWVGYMNGIVQVLD 485 (1115)
Q Consensus 472 LaSGs~DGtIrlWD 485 (1115)
+|+++-||.|++||
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999997
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.5e-20 Score=192.43 Aligned_cols=265 Identities=18% Similarity=0.221 Sum_probs=186.9
Q ss_pred EEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeE
Q 001245 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRI 215 (1115)
Q Consensus 138 l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtI 215 (1115)
|++...|.+. ++.|++-+=++..+..++. + .+..-...+..|++++. ...+++++.||++
T Consensus 24 LavAt~q~yGl~G~G~L~ile~~~~~gi~e-----------------~-~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 24 LAVATAQHYGLAGNGRLFILEVTDPKGIQE-----------------C-QSYDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred hheeehhhcccccCceEEEEecCCCCCeEE-----------------E-EeeecccceeEeeecCCCcceEEEEecCceE
Confidence 4455555554 5677888888764433321 0 01100456788999986 5678999999999
Q ss_pred EEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeee
Q 001245 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (1115)
Q Consensus 216 rlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~ 293 (1115)
|+||+... -++++.|+.|...|.++-+++-.. ++++|+|+|||+|+.....-..+
T Consensus 86 rl~d~~~~-------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T---------------- 142 (311)
T KOG0277|consen 86 RLFDLTMP-------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT---------------- 142 (311)
T ss_pred EEeccCCC-------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe----------------
Confidence 99996531 246788999999999999988643 67889999999999866433322
Q ss_pred eeeecccceecceeeeecCCeEEEEEeC-CCCEEEee-cCCeEEEEEcCC-ccEEEEEecCCceeeEEeccCCCCccccc
Q 001245 294 YIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSA-GFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1115)
Q Consensus 294 ~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~-sd~tI~lWD~~t-g~ll~tl~~~~~~~~~v~~s~~~~~~~~~ 370 (1115)
.+||. +-|-..++++ ....++++ +|++.+|||++. |+.+. +..
T Consensus 143 ---f~gh~----------~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~a-------------------- 188 (311)
T KOG0277|consen 143 ---FNGHN----------SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEA-------------------- 188 (311)
T ss_pred ---ecCCc----------cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEe--------------------
Confidence 23343 2233333433 34455665 478999999764 22221 111
Q ss_pred cceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc--CCCcEEEEeCCCeEEEEcC-
Q 001245 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS--IDGMIWTGGANGLLLQWDP- 447 (1115)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S--~Dg~laSGS~DgtIklWD~- 447 (1115)
|..++.+.-++ .+..++||+.|+.||.||+
T Consensus 189 -----------------------------------------------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 189 -----------------------------------------------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred -----------------------------------------------ccceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 11112222221 2234899999999999999
Q ss_pred C-CCeeEEeecCCCcEEEEEe---cCCEEEeeecccEEEEEeCC-C-ccccccccccCCEEEEE---ecCCEEEeecCCC
Q 001245 448 N-GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSPVIKMA---VGAGYIFTLANHG 518 (1115)
Q Consensus 448 t-G~~l~tl~gH~~~V~sla~---dG~~LaSGs~DGtIrlWD~~-G-~ll~~l~gH~~~V~sva---~dg~~laSgS~Dg 518 (1115)
+ -.++..+.+|.-+|..|+. .-..|||++.|-|+||||.+ + .++.+..-|++-|..+. +++.++|+.+.|.
T Consensus 222 ~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 222 NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccc
Confidence 3 4688999999999999993 36899999999999999976 3 46777888999999887 4789999999999
Q ss_pred ceEEee
Q 001245 519 GIRGWN 524 (1115)
Q Consensus 519 tIRlWd 524 (1115)
.+.||+
T Consensus 302 ~l~Vw~ 307 (311)
T KOG0277|consen 302 LLYVWN 307 (311)
T ss_pred ceeeec
Confidence 999998
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.4e-20 Score=218.99 Aligned_cols=244 Identities=16% Similarity=0.157 Sum_probs=181.3
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------------------------------------CC-----
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL------------------------------------LD----- 226 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~------------------------------------~~----- 226 (1115)
.| .++|.|+.||+||++||||+.||.||||.+-... .+
T Consensus 265 ah-~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AH-KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cc-CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 45 7899999999999999999999999999875400 00
Q ss_pred -CCC--------C--CcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeee
Q 001245 227 -SDD--------G--FGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1115)
Q Consensus 227 -~~~--------~--~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~ 295 (1115)
... . -++.+.|+||.+-|..|.+|.++-|+|+|.|+|||||.+...+|+-+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-----------------
Confidence 000 0 012346789999999999999988999999999999999887665221
Q ss_pred eecccceecceeeeecCCeEEEEEeCCCCE-EEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccce
Q 001245 296 DLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (1115)
Q Consensus 296 ~l~~h~~~~~~~~~~s~~v~~las~~~~~~-v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~ 373 (1115)
.|. +.|+|+++.|.+++ ++||+ |+.+|||++-..+.+
T Consensus 407 ---~Hn----------dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---------------------------- 445 (712)
T KOG0283|consen 407 ---SHN----------DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---------------------------- 445 (712)
T ss_pred ---ecC----------CeeEEEEecccCCCcEeecccccceEEeecCcCeeE----------------------------
Confidence 233 77999999886554 45555 789999997533221
Q ss_pred EEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCCCCee
Q 001245 374 TKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRL 452 (1115)
Q Consensus 374 ~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l 452 (1115)
-|.. -..-|++++++|||+ .+.|+-+|.+++|+..|..+
T Consensus 446 ----------------------------------~W~D------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 446 ----------------------------------DWND------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred ----------------------------------eehh------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 1111 013478899999999 67999999999999977554
Q ss_pred EE-ee--cC------CCcEEEEEe---cCCEEEeeecccEEEEEeCC-CccccccccccCC---EEE-EEecCCEEEeec
Q 001245 453 QD-FQ--YL------PFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP---VIK-MAVGAGYIFTLA 515 (1115)
Q Consensus 453 ~t-l~--gH------~~~V~sla~---dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~---V~s-va~dg~~laSgS 515 (1115)
++ +. -| ...|+.+.+ +-..|++.+.|..|||+|.. -+++..|+|+... +.+ +..||++|++||
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 33 22 11 127998883 33579999999999999985 5788889987542 222 335999999999
Q ss_pred CCCceEEeeecCCCC
Q 001245 516 NHGGIRGWNVTSPGP 530 (1115)
Q Consensus 516 ~DgtIRlWdl~~p~p 530 (1115)
.|.-|.+|+...+..
T Consensus 566 eDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 566 EDSWVYIWKNDSFNS 580 (712)
T ss_pred cCceEEEEeCCCCcc
Confidence 999999999876543
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.5e-19 Score=199.23 Aligned_cols=260 Identities=11% Similarity=0.083 Sum_probs=182.6
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
++..+| +.|.|..+|.+.......- -++--+| ..+|.-+.||||.++|++.+.|..+++||
T Consensus 235 nGkyLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 235 NGKYLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred CCeeEeeccCCceEEEEEEecCcceee----------------eeeeecc-cCceEEEEECCCCCeEEecCchHheeecc
Confidence 555556 5799999999765433210 0111245 88999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeee
Q 001245 220 MNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l 297 (1115)
+.+|.+ .+.+ .+|..+|.|.++.|||. +++||.|++|..||++....- .-
T Consensus 298 v~tgd~--------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~--------------------~W 349 (519)
T KOG0293|consen 298 VDTGDL--------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG--------------------NW 349 (519)
T ss_pred CCcchh--------hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh--------------------cc
Confidence 998532 2222 45668999999999997 999999999999999764211 00
Q ss_pred cccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEE
Q 001245 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1115)
Q Consensus 298 ~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~ 376 (1115)
++.. ...|.+++..++|..+.+. .|+.|++++..+.......+.+ +.+++
T Consensus 350 ~gvr---------~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its------------------- 400 (519)
T KOG0293|consen 350 EGVR---------DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITS------------------- 400 (519)
T ss_pred cccc---------cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-CceeE-------------------
Confidence 0111 1467888888888887765 5888999998877665433222 22222
Q ss_pred EecCCCCccceeeeeeccccceEEec-cCcEEEEecc-----cccccCCCceEE--EEEc--CCCcEEEEeCCCeEEEEc
Q 001245 377 VTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAK-----GGFGDDNRRTEA--LTTS--IDGMIWTGGANGLLLQWD 446 (1115)
Q Consensus 377 ~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~-----g~l~~h~~~V~a--Va~S--~Dg~laSGS~DgtIklWD 446 (1115)
+..+.+++.+++.- ..++.+|+.. ..+.||...-.. -+|. .+..++|||+|+.|.||+
T Consensus 401 ------------~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 401 ------------FSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred ------------EEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 23333333333332 2356677653 234455433221 1232 233489999999999999
Q ss_pred C-CCCeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC
Q 001245 447 P-NGNRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 447 ~-tG~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~ 487 (1115)
. +|+++.++.||...|+||+ | +-.++||||.|||||||-..
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9 9999999999999999999 3 67899999999999999864
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.3e-19 Score=198.58 Aligned_cols=271 Identities=21% Similarity=0.283 Sum_probs=195.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC------------CCCCcceEEeecCCCCEEEEEEeCCCc-EEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS------------DDGFGEVLSWQAHRGPVLSLCISSYGD-LWS 257 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~------------~~~~~~~~~l~GH~~~V~sVafSpdG~-L~S 257 (1115)
.-+++||++++++++++|+|.||+|-=|++.++.-+. ..++++ ..++|..-|.++|+|+||+ |++
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~--~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE--SRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc--ccccccceeEEEEEcCCCcEEEe
Confidence 6689999999999999999999999999998766320 111111 1258999999999999998 899
Q ss_pred EeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEE
Q 001245 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFAL 336 (1115)
Q Consensus 258 gS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~l 336 (1115)
|+.|..|.||+.++.+.... +.+|. +.|.+|++-.....+++++ |.+|++
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~-------------------~~ghr----------~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKV-------------------FKGHR----------GAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cCCCceEEEecCcccchhhc-------------------ccccc----------cceeeeeeecCccceeeeecCCceEE
Confidence 99999999999998765422 23454 6788888877777777765 899999
Q ss_pred EEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc---
Q 001245 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK--- 412 (1115)
Q Consensus 337 WD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~--- 412 (1115)
|++..-..+.+|-+|...+..++. +...+.+.+|..| ++++|...
T Consensus 271 w~~~~~s~vetlyGHqd~v~~Ida-------------------------------L~reR~vtVGgrDrT~rlwKi~ees 319 (479)
T KOG0299|consen 271 WSIDQLSYVETLYGHQDGVLGIDA-------------------------------LSRERCVTVGGRDRTVRLWKIPEES 319 (479)
T ss_pred EehhHhHHHHHHhCCccceeeech-------------------------------hcccceEEeccccceeEEEeccccc
Confidence 999888877777555444322211 1122233344333 34455331
Q ss_pred -cccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEee-c-----------CCCcEEEEE--ecCCEEEeee
Q 001245 413 -GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQ-Y-----------LPFAVQCLC--TFGSQIWVGY 476 (1115)
Q Consensus 413 -g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~-g-----------H~~~V~sla--~dG~~LaSGs 476 (1115)
-.|.++.+.+.|++|=.+..++|||.||.|-||++ .-+++.+.. + |..+|++|+ +...++||||
T Consensus 320 qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 320 QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 23556777899999988889999999999999999 666665432 1 223899999 5678999999
Q ss_pred cccEEEEEeCC-C----ccccccccccCCEEEEEe--cCCEEEee-cCCCceEEee
Q 001245 477 MNGIVQVLDLE-G----NLLGGWVAHSSPVIKMAV--GAGYIFTL-ANHGGIRGWN 524 (1115)
Q Consensus 477 ~DGtIrlWD~~-G----~ll~~l~gH~~~V~sva~--dg~~laSg-S~DgtIRlWd 524 (1115)
.+|.||||-++ | +++..+. -.+.|++|++ +|++++.| +.....=-|-
T Consensus 400 ~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceee
Confidence 99999999986 5 3455554 5678999985 78866554 4443333343
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.82 E-value=1.9e-18 Score=182.11 Aligned_cols=279 Identities=17% Similarity=0.166 Sum_probs=192.3
Q ss_pred ceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC
Q 001245 184 FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (1115)
Q Consensus 184 ~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg 262 (1115)
+.-.+| ..|++-+.++.+|.+|+|.++|.++-+|-...| +.+-++.||+++|+|+.++-+.+ |++||.|.
T Consensus 4 i~l~GH-ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--------erlGty~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 4 ILLQGH-ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred cccccC-ccccceEEecCCCcEEEEecCCCCceEEEecCC--------ceeeeecCCCceEEEEEecCCcceeeeccccc
Confidence 333466 889999999999999999999999999976432 44668999999999999998887 89999999
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC------CeEEE
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF------LSFAL 336 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd------~tI~l 336 (1115)
++||||+++|+++.++. ....|+.+-++.++..+..+.| ..|.+
T Consensus 75 t~kLWDv~tGk~la~~k------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWK------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeEEEEcCCCcEEEEee------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 99999999987652211 1145666666666666555443 35778
Q ss_pred EEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-c-
Q 001245 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-G- 413 (1115)
Q Consensus 337 WD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g- 413 (1115)
+|++.-.. +. ..+++-.++....++ . +.....+.+..++.|+.++ +..|+.. |
T Consensus 125 fdi~~~~~--------~~-------------~s~ep~~kI~t~~sk--i-t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 125 FDIRDDSS--------DI-------------DSEEPYLKIPTPDSK--I-TSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred EEccCChh--------hh-------------cccCceEEecCCccc--e-eeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 88763221 00 000000111111000 0 1112334456677887765 6667664 2
Q ss_pred cc----ccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeee-ccc-EEEE
Q 001245 414 GF----GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNG-IVQV 483 (1115)
Q Consensus 414 ~l----~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs-~DG-tIrl 483 (1115)
.+ ..|...|+.+.+++|.+ ++|||.|.+-|+||. +-+++.++.. ..+|++.+ |.-..++.|+ .+- .|.-
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTT 259 (327)
T ss_pred eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeee
Confidence 22 35778999999999988 799999999999999 7788998876 56899888 5444444443 321 1111
Q ss_pred EeCC-Cc------------cccccccccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 484 LDLE-GN------------LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 484 WD~~-G~------------ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
=+.. |+ .+...+||-++|++|++ +|+.-+||+.||.||+--+.
T Consensus 260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 1111 32 46678999999999994 89999999999999997654
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.7e-18 Score=181.92 Aligned_cols=265 Identities=15% Similarity=0.200 Sum_probs=201.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe--CCCcEEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS--~DgtIrvW 267 (1115)
.+.|+++.|+++|..|++.+.|.+++++|...+ +...+..-++-.|..++|..... ++.+| .|.|||.-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 458999999999999999999999999999864 34566666777899999987665 55454 49999999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
++.+.+.+.- ..||. ..|..+..+|.++.+.|++ |++|++||+++.+|..
T Consensus 86 sl~dNkylRY-------------------F~GH~----------~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg 136 (311)
T KOG1446|consen 86 SLHDNKYLRY-------------------FPGHK----------KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG 136 (311)
T ss_pred EeecCceEEE-------------------cCCCC----------ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce
Confidence 9987655411 24676 6788888999888888877 7899999999888876
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEec----cccc------
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA----KGGF------ 415 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~----~g~l------ 415 (1115)
.+...+..+. +|.|.+-..+++... .|++.+. +|.|
T Consensus 137 ~l~~~~~pi~---------------------------------AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 137 LLNLSGRPIA---------------------------------AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred EEecCCCcce---------------------------------eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 6644333321 233333333333332 2333222 1211
Q ss_pred ccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcE----EEE-EecCCEEEeeecccEEEEEeCC-
Q 001245 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAV----QCL-CTFGSQIWVGYMNGIVQVLDLE- 487 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V----~sl-a~dG~~LaSGs~DGtIrlWD~~- 487 (1115)
.....+.+.+.|||||+ |+.+...+.+.+-|. +|..++++.+|...- .+. .|||+++.+|+.||+|.+|+++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 13345677899999998 677788889999999 999999999987642 222 2899999999999999999997
Q ss_pred Ccccccccc-ccCCEEEEEecCCEEEeecCCCceEEeee
Q 001245 488 GNLLGGWVA-HSSPVIKMAVGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 488 G~ll~~l~g-H~~~V~sva~dg~~laSgS~DgtIRlWdl 525 (1115)
|..+..|+| |.+++.++.+++++..-++.+..+-+|-.
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLP 302 (311)
T ss_pred CcEeeEecCCCCCCccccccCCceeeeeecCceEEEEec
Confidence 999999999 89999999999998887888889999964
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.9e-18 Score=174.53 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=173.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECC------CCCC-CCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMN------ARLL-DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~------~~~~-~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg 262 (1115)
+..|.+++|-|.|++-|.||...|.|+---- .+-. .--.+......-+-|+++|.|+++||+|+ |++||.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 6789999999999999999999999986421 1000 00011111223357899999999999999 58999999
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC----CCCEEEeec--CCeEEE
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAG--FLSFAL 336 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~----~~~~v~S~s--d~tI~l 336 (1115)
+||+-..+.-.+-.+... +.+.-| ++.++.+++-. .+..++|++ |..|.+
T Consensus 112 ~ik~l~fn~dt~~~~g~d--------------le~nmh----------dgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHD--------------LEFNMH----------DGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred eEEEEecccccccccCcc--------------eeeeec----------CCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 999987765333221111 001112 25667777632 355667765 445666
Q ss_pred EEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccc
Q 001245 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1115)
Q Consensus 337 WD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~ 416 (1115)
-|-.+|+-++.+++|.
T Consensus 168 tdc~~g~~~~a~sght---------------------------------------------------------------- 183 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHT---------------------------------------------------------------- 183 (350)
T ss_pred eecCCCCcceeecCCc----------------------------------------------------------------
Confidence 6777777666654432
Q ss_pred cCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeec--C-----CCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY--L-----PFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 417 ~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~g--H-----~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
+.|.++-.=.+-++++||.|.|||+||+ -..|+.++.. | +..|.+|+ |.|++|++|-.|..-.++|+
T Consensus 184 ---ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 184 ---GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred ---ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 2222221111225899999999999999 5677777642 2 35788888 77999999999999999999
Q ss_pred C-CccccccccccCCEEEEEec--CCEEEeecCCCceEEeeec
Q 001245 487 E-GNLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 487 ~-G~ll~~l~gH~~~V~sva~d--g~~laSgS~DgtIRlWdl~ 526 (1115)
. |+.++.+..|+..|.+|.|. ..|+.++|+|..||+=|+.
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 8 78999999999999999874 4589999999999999975
No 86
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.1e-18 Score=201.09 Aligned_cols=259 Identities=20% Similarity=0.242 Sum_probs=198.7
Q ss_pred EEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 001245 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (1115)
Q Consensus 145 l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~ 224 (1115)
|..|-...|-+|+..++.... .. ..+ ...|+++.++++|+.||.|-.+|+|.+||....
T Consensus 191 laValg~~vylW~~~s~~v~~------------------l~-~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~- 249 (484)
T KOG0305|consen 191 LAVALGQSVYLWSASSGSVTE------------------LC-SFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ- 249 (484)
T ss_pred EEEEecceEEEEecCCCceEE------------------eE-ecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-
Confidence 333677799999998887433 11 132 568999999999999999999999999998752
Q ss_pred CCCCCCCcceEEeec-CCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeeccccee
Q 001245 225 LDSDDGFGEVLSWQA-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1115)
Q Consensus 225 ~~~~~~~~~~~~l~G-H~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~ 303 (1115)
+.+..+.+ |...|-++++... .+.+|+.|+.|..+|+...+.... .+.+|.
T Consensus 250 -------k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~~------------------~~~~H~-- 301 (484)
T KOG0305|consen 250 -------KKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVVS------------------TLQGHR-- 301 (484)
T ss_pred -------cccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhhh------------------hhhccc--
Confidence 34667778 9999999999942 378999999999999977543311 134454
Q ss_pred cceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCC
Q 001245 304 NGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1115)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~ 382 (1115)
.+|--+..++++..++|++ |..+.|||..+-+.+..+
T Consensus 302 --------qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~---------------------------------- 339 (484)
T KOG0305|consen 302 --------QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF---------------------------------- 339 (484)
T ss_pred --------ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE----------------------------------
Confidence 4566677888899999987 688999997443333332
Q ss_pred CccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC--CcEEEE--eCCCeEEEEcC-CCCeeEEeec
Q 001245 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GMIWTG--GANGLLLQWDP-NGNRLQDFQY 457 (1115)
Q Consensus 383 ~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D--g~laSG--S~DgtIklWD~-tG~~l~tl~g 457 (1115)
..|...|.++++.|= |.||+| +.|++|++||. +|.+++.+..
T Consensus 340 ---------------------------------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 340 ---------------------------------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred ---------------------------------eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 345555666676653 457765 45999999999 8999998876
Q ss_pred CCCcEEEEE--ecCCEEEe--eecccEEEEEeCC-CccccccccccCCEEEEE--ecCCEEEeecCCCceEEeeecCC
Q 001245 458 LPFAVQCLC--TFGSQIWV--GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 458 H~~~V~sla--~dG~~LaS--Gs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
+ ..|.+|. +..+-|++ |..+..|.||+.. -+.+..+.||+..|..++ +||..++||+.|.|+|+|++-..
T Consensus 387 g-sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 387 G-SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C-CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3 6799998 34443443 5578899999975 578899999999999988 69999999999999999998764
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.81 E-value=6.4e-20 Score=202.60 Aligned_cols=259 Identities=17% Similarity=0.225 Sum_probs=191.2
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.| .+.|..+.|-++...|+||+.|..|++|+..++++ ....+|.|-.++|+++.|.++++ ++++|.|+.+++
T Consensus 173 ~h-~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 173 AH-EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred cc-ccccceeEEccCcchhhhcchhhhhhhhhcccchh------hhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 44 56788999999989999999999999999987543 34567889999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
|+++..... -.|.||. ++|.++-+.-....+++++ |.+||+||+..+.|.
T Consensus 246 Wnvd~~r~~-------------------~TLsGHt----------dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 246 WNVDSLRLR-------------------HTLSGHT----------DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred eeccchhhh-------------------hhhcccc----------cceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 999875433 1235565 5555555544444577776 689999999998888
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEE
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aV 425 (1115)
+++-+.++. ..|
T Consensus 297 kt~l~~S~c--------------------------------------------------------------------nDI 308 (459)
T KOG0288|consen 297 KTVLPGSQC--------------------------------------------------------------------NDI 308 (459)
T ss_pred ccccccccc--------------------------------------------------------------------cce
Confidence 775322221 111
Q ss_pred EEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC-ccccccc------
Q 001245 426 TTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG-NLLGGWV------ 495 (1115)
Q Consensus 426 a~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G-~ll~~l~------ 495 (1115)
+.+ .-.++||..|++||+||. .+.++++...|. .|++|. ++|..|.+.+.|.++.+.|+.+ +..+.+.
T Consensus 309 ~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 309 VCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred Eec-ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 111 113789999999999998 889999998875 899988 7899999999999999999874 3444443
Q ss_pred cccCCEEEEEecCCEEEeecCCCceEEeeecCCCCCchhhHHHhhccccccceecccceEEEEEEeCC
Q 001245 496 AHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQ 563 (1115)
Q Consensus 496 gH~~~V~sva~dg~~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~ 563 (1115)
+|.-.-..+.+|+.|+++||.||.|+||++.+ +-++.. ++.. ..+--|+...||=.|
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t-gKlE~~----l~~s------~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT-GKLEKV----LSLS------TSNAAITSLSWNPSG 443 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccC-ceEEEE----eccC------CCCcceEEEEEcCCC
Confidence 44422222346999999999999999999876 233222 2211 122268999999754
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=8.1e-19 Score=197.75 Aligned_cols=249 Identities=18% Similarity=0.236 Sum_probs=187.0
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
.+-..+++++..+....++ -+-| ..-|.++.|-.||++||.|..-|.|+++|+.+.
T Consensus 45 t~S~rvqly~~~~~~~~k~--------------~srF------k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---- 100 (487)
T KOG0310|consen 45 TSSVRVQLYSSVTRSVRKT--------------FSRF------KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---- 100 (487)
T ss_pred ecccEEEEEecchhhhhhh--------------HHhh------ccceeEEEeecCCeEEEccCCcCcEEEeccccH----
Confidence 4456788888766544432 0112 346888999999999999999999999996541
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecc
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~ 305 (1115)
..++.+++|+.||..+.|+|.+. |+|||+|+++|+||+.+.... ..+.+|.
T Consensus 101 ----~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~-------------------~~l~~ht---- 153 (487)
T KOG0310|consen 101 ----VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ-------------------AELSGHT---- 153 (487)
T ss_pred ----HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE-------------------EEecCCc----
Confidence 23457899999999999999875 679999999999999875421 2345676
Q ss_pred eeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCc-cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCC
Q 001245 306 FSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1115)
Q Consensus 306 ~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg-~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~ 382 (1115)
+.|+|.++.+.+. .++|++ |++||+||+++- ..+..|
T Consensus 154 ------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el---------------------------------- 193 (487)
T KOG0310|consen 154 ------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL---------------------------------- 193 (487)
T ss_pred ------ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----------------------------------
Confidence 7789988887655 677777 799999998764 222222
Q ss_pred CccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CC-CeeEEeecCC
Q 001245 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLP 459 (1115)
Q Consensus 383 ~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG-~~l~tl~gH~ 459 (1115)
.|..+|+.|.+-|.|. |||++. ..||+||+ +| +.+..+..|.
T Consensus 194 ----------------------------------nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~ 238 (487)
T KOG0310|consen 194 ----------------------------------NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHN 238 (487)
T ss_pred ----------------------------------cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhccc
Confidence 1333556666556644 677665 47999999 45 4555566699
Q ss_pred CcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE--ecCCEEEeecCCCceEEe
Q 001245 460 FAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 460 ~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlW 523 (1115)
..|+|++ .++++|+||+-||.|+++|++ -+.+.+|. -.++|.+++ +|++.++.|-.||.+-+-
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 9999999 578999999999999999976 56777774 467899987 477899999999987554
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.2e-17 Score=193.16 Aligned_cols=375 Identities=14% Similarity=0.129 Sum_probs=237.2
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCC----CCC----CCCc-eeeecc-CCceEEEEEcCCCCEEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKG----EDG----TAPF-KESVKG-VSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~----d~~----~~~~-~~s~~G-~~~V~~la~s~dg~~LaSG 209 (1115)
..++++ .++++||+++.+|..-+.+ ..|.- |.+ ..|. .+.-.+ ..-..++.||+....|.--
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~T------lpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscV 342 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGT------LPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCV 342 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccc------cccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEE
Confidence 344444 4899999999887654432 22311 111 1110 010011 2234688999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC------------CCcEEEEeCCCcEEEEeCCCcceeec
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS------------YGDLWSGSEGGGIKIWPWEAIEKALS 277 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp------------dG~L~SgS~DgtIrvWdl~t~~~~l~ 277 (1115)
-.|..|.+||+.. .+....+..+--|..-|++|.--| .+-+.++|.|+||||||++.+..-..
T Consensus 343 YndhSlYvWDvrD-----~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v 417 (1080)
T KOG1408|consen 343 YNDHSLYVWDVRD-----VNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV 417 (1080)
T ss_pred EcCceEEEEeccc-----cccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce
Confidence 9999999999974 222334566777999999887654 23378999999999999987322111
Q ss_pred c--CCCcceeEEEEeeee-eeeec--cc--ceecce-eeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEE
Q 001245 278 L--KPEERHTAALIVERS-YIDLR--SH--LSVNGF-SSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVF 348 (1115)
Q Consensus 278 ~--~~~~~~~~a~~~~~~-~~~l~--~h--~~~~~~-~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl 348 (1115)
+ ..-+..+.....+.. ...+. +. ..-..+ ...+-.-+++++.++++..|+++.- ++++|+|+..-+.+-.+
T Consensus 418 yrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~ 497 (1080)
T KOG1408|consen 418 YRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM 497 (1080)
T ss_pred eecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe
Confidence 0 000000000000000 00000 00 000011 1112345899999999999998864 78999999887777666
Q ss_pred ecCCceeeEEeccCCCC-----ccccccceEEEEecCCC----------Cccceeeeeeccc--cceEEeccCcE--EEE
Q 001245 349 NIDGQIENRVDMSLLPD-----FAMEDEFKTKIVTSSKK----------DKAQSSFGFFQRS--RNAIMGAADAV--RRV 409 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~-----~~~~~~~~~~~~~~~~~----------~~~~~~v~f~~~~--~~~~~Gs~d~v--~~~ 409 (1115)
..|...+-++.++--.. .....+..+.+++..+. ....+++.|.-.+ ...++..+|.. .+.
T Consensus 498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence 66666556666653110 11122223333332221 2233566776555 44454444432 222
Q ss_pred ecc---c-ccccCC-----CceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeec---CCCcEEEEE--ecCCEEE
Q 001245 410 AAK---G-GFGDDN-----RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY---LPFAVQCLC--TFGSQIW 473 (1115)
Q Consensus 410 ~~~---g-~l~~h~-----~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~g---H~~~V~sla--~dG~~La 473 (1115)
..+ | .|..|+ ..+..+++.|..+ +++++.|+.|+|+|+ +|+..++|++ |.+....|. |.|-|||
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~a 657 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLA 657 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEE
Confidence 221 2 233333 2456688888766 799999999999999 8999999987 444444444 8899999
Q ss_pred eeecccEEEEEeC-CCccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 474 VGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 474 SGs~DGtIrlWD~-~G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+.+.|.++.++|. .|+|++.+.||++.|+.|.| |-+.|+|.|.||.|-+|.+..
T Consensus 658 tScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 658 TSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999996 59999999999999999986 778999999999999999743
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.4e-17 Score=168.39 Aligned_cols=289 Identities=18% Similarity=0.260 Sum_probs=203.3
Q ss_pred eeeEEEEEe-CCeEEE-e-CCCCEEEEeCCCCcccccccccccccCCCCCCCC-C----ce-eeeccCCceEEEEEcCCC
Q 001245 133 CFLRTIVCT-EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTA-P----FK-ESVKGVSSVMCMVGDEAS 203 (1115)
Q Consensus 133 ~~l~~l~~~-~~~l~a-g-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~-~----~~-~s~~G~~~V~~la~s~dg 203 (1115)
+.+|+++++ ++.|+| | ..+|.|+---... ...|.+.+.+. | ++ ..-| .++|.|.+++|.|
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l----------~~~r~~hea~~~pp~v~~kr~khh-kgsiyc~~ws~~g 101 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPAL----------IDLRHAHEAAKQPPSVLCKRNKHH-KGSIYCTAWSPCG 101 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccc----------cCcccccccccCCCeEEeeecccc-CccEEEEEecCcc
Confidence 467888888 778988 4 4569998542211 12244433221 1 11 1234 6799999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC----Cc-EEEEe-CCCcEEEEeCCCcceeec
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----GD-LWSGS-EGGGIKIWPWEAIEKALS 277 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd----G~-L~SgS-~DgtIrvWdl~t~~~~l~ 277 (1115)
++|||||.|.+||+--.+...| +.......|.-|.+.|..++|-.+ |. |+|++ .|..|.+=|-.++....
T Consensus 102 eliatgsndk~ik~l~fn~dt~---~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~- 177 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTC---NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH- 177 (350)
T ss_pred CeEEecCCCceEEEEecccccc---cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce-
Confidence 9999999999999987765433 233344567789999999999754 23 56654 57777777776654331
Q ss_pred cCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceee
Q 001245 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (1115)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~ 356 (1115)
.+.+|. +.+..|-+- .+..++|++ |+||+.||++-..+++++..+-
T Consensus 178 ------------------a~sght----------ghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~---- 224 (350)
T KOG0641|consen 178 ------------------ALSGHT----------GHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF---- 224 (350)
T ss_pred ------------------eecCCc----------ccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcc----
Confidence 233444 333343333 345566665 7999999998777776652110
Q ss_pred EEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEE
Q 001245 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT 435 (1115)
Q Consensus 357 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laS 435 (1115)
++.+ + .+..|.+|++.|.|+ |++
T Consensus 225 -------------------------~~~g-----------------------------l--essavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 225 -------------------------HDGG-----------------------------L--ESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred -------------------------cCCC-----------------------------c--ccceeEEEEECCCcceeee
Confidence 0000 0 223577889999998 689
Q ss_pred EeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCcccccc-----ccccCCEEEEEec
Q 001245 436 GGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGW-----VAHSSPVIKMAVG 507 (1115)
Q Consensus 436 GS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l-----~gH~~~V~sva~d 507 (1115)
|.+|...-+||+ .|+.+|.+..|+..|.||. |..-+|.+++.|..|++=|+.|.+...+ -.|.+.+....+.
T Consensus 249 g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 249 GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 999999999999 6789999999999999999 4567999999999999999998764443 3577777777665
Q ss_pred CC--EEEeecCCCceEEeee
Q 001245 508 AG--YIFTLANHGGIRGWNV 525 (1115)
Q Consensus 508 g~--~laSgS~DgtIRlWdl 525 (1115)
.+ ..+|.|.|.|+.+|-+
T Consensus 329 ~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CccceeeeccCcceEEEecc
Confidence 44 4678899999999975
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.7e-18 Score=195.11 Aligned_cols=222 Identities=20% Similarity=0.295 Sum_probs=172.7
Q ss_pred eCCeEEE-e-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEE
Q 001245 141 TEEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMC 217 (1115)
Q Consensus 141 ~~~~l~a-g-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrl 217 (1115)
++++|+| | ..|-|+|+|..+-..++. +. .| ..||..+-|.|+ +.+++|||.|+.+++
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~-----------------~~--ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQ-----------------LY--AH-QAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHH-----------------Hh--hc-cCceeEEEecccCCeEEEecCCCceEEE
Confidence 3778887 3 456999999766444442 11 35 779999999985 889999999999999
Q ss_pred EECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCc-ceeeccCCCcceeEEEEeeeee
Q 001245 218 WKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSY 294 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~-~~~l~~~~~~~~~~a~~~~~~~ 294 (1115)
||++++ .....+.||++.|.|.+++|-.. ++|||-||+||+||+.+. ....+
T Consensus 138 ~d~s~a--------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e----------------- 192 (487)
T KOG0310|consen 138 WDLSTA--------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE----------------- 192 (487)
T ss_pred EEcCCc--------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-----------------
Confidence 999973 22457899999999999999765 689999999999999763 22211
Q ss_pred eeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceE
Q 001245 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1115)
Q Consensus 295 ~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~ 374 (1115)
-+|. -+|..+++-+.+..+++++...|||||+.+|..+-+
T Consensus 193 ---lnhg----------~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~--------------------------- 232 (487)
T KOG0310|consen 193 ---LNHG----------CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT--------------------------- 232 (487)
T ss_pred ---ecCC----------CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh---------------------------
Confidence 1233 456777888888999999999999999875543211
Q ss_pred EEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCee
Q 001245 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (1115)
Q Consensus 375 ~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l 452 (1115)
.+..|...|+|+.+..+++ |+|||-|+.||++|. +-+.+
T Consensus 233 ---------------------------------------~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 233 ---------------------------------------SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred ---------------------------------------hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 0223667888999877776 999999999999998 56788
Q ss_pred EEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 453 QDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 453 ~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
..+.. .++|.+++ +|++.++.|-.||.+-+-+..
T Consensus 274 ~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 274 HSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred Eeeec-ccceeeEEecCCCceEEEecccceeeeehhh
Confidence 88764 68999988 789999999999998876543
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=6.8e-18 Score=180.64 Aligned_cols=270 Identities=16% Similarity=0.164 Sum_probs=179.9
Q ss_pred CcccccCCCccccccceeeEEEEEe---CCeEEE-eCCCCEEEEeCCCC-cccccccccccccCCCCCCCCCceeeeccC
Q 001245 117 PSLEVKPHPLRETQIGCFLRTIVCT---EEQLWA-GGENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGV 191 (1115)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~l~~l~~~---~~~l~a-g~D~tvrvWdl~tg-~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~ 191 (1115)
.-+|+.++| |.. +..|+++ ...+.| +-|++||+|++... ....+ ...-| .
T Consensus 18 kd~ev~~pP--~Ds----IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~-~ 72 (347)
T KOG0647|consen 18 KDYEVPNPP--EDS----ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSH-D 72 (347)
T ss_pred cceecCCCc--ccc----hheeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhcc-C
Confidence 456776666 422 3355665 233435 57999999999873 32211 11134 7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc---EEEEeCCCcEEEEe
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWP 268 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~---L~SgS~DgtIrvWd 268 (1115)
+||+|++++.||..+++|+.|+.+++||+.++ ...+...|.++|.++.|-+... |++||+|+|||.||
T Consensus 73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred CCeEEEEEccCCceEEeeccCCceEEEEccCC---------CeeeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 89999999999999999999999999999973 3667889999999999987542 78999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeecCCeEEEEEcCCccEEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKV 347 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~sd~tI~lWD~~tg~ll~t 347 (1115)
+.......++...+ ++.+.+-... .+++..+..|.+++++.+.-...
T Consensus 144 ~R~~~pv~t~~LPe--------------------------------RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k 191 (347)
T KOG0647|consen 144 TRSSNPVATLQLPE--------------------------------RVYAADVLYPMAVVATAERHIAVYNLENPPTEFK 191 (347)
T ss_pred cCCCCeeeeeeccc--------------------------------eeeehhccCceeEEEecCCcEEEEEcCCCcchhh
Confidence 97654443222211 1111111111 22334456788888765432100
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~ 427 (1115)
.. .|| .+ -.++||+.
T Consensus 192 --~~--------~Sp--------------------Lk-----------------------------------~Q~R~va~ 206 (347)
T KOG0647|consen 192 --RI--------ESP--------------------LK-----------------------------------WQTRCVAC 206 (347)
T ss_pred --hh--------cCc--------------------cc-----------------------------------ceeeEEEE
Confidence 00 000 00 12455554
Q ss_pred cCCCc-EEEEeCCCeEEEEcC-CC--CeeEEeecCCC---------cEEEEE--ecCCEEEeeecccEEEEEeCC-Cccc
Q 001245 428 SIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPF---------AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLL 491 (1115)
Q Consensus 428 S~Dg~-laSGS~DgtIklWD~-tG--~~l~tl~gH~~---------~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll 491 (1115)
-.|.. .|.||..|.+-+-.+ .+ +.--+|+.|.. +|++|+ |.-..|+++++||++..||-+ -..|
T Consensus 207 f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 207 FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 44443 478888998888887 45 34456777763 466666 567789999999999999976 4457
Q ss_pred cccccccCCEEEEEe--cCCEEE-eecCC
Q 001245 492 GGWVAHSSPVIKMAV--GAGYIF-TLANH 517 (1115)
Q Consensus 492 ~~l~gH~~~V~sva~--dg~~la-SgS~D 517 (1115)
.+..-|..+|++-.+ +|++.| ..|+|
T Consensus 287 k~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 287 KTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred hccCcCCCccceeEecCCCCEEEEEeecc
Confidence 778889999998776 677544 56676
No 93
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=3.6e-18 Score=207.89 Aligned_cols=304 Identities=19% Similarity=0.231 Sum_probs=213.9
Q ss_pred CCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCC-C---CCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCc
Q 001245 191 VSSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARL-L---DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS--~DgtIrlWdl~~~~-~---~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dgt 263 (1115)
...+.++.++|+|..+|||+ .||.|++|+.+.=. . ...+.-+++.++..|.++|+||.||+||+ |||||+|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 45689999999999999999 99999999975311 0 01112234556788999999999999998 899999999
Q ss_pred EEEEeCCCcceeecc-C-CCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcC
Q 001245 264 IKIWPWEAIEKALSL-K-PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~-~-~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~ 340 (1115)
|-||........-.+ + ..+.+...- +....+++|. ++|..++.++++..++|++ |.+|.|||.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~w---k~~~~l~~H~----------~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESW---KVVSILRGHD----------SDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred EEEeeecccCCccccccccccccccee---eEEEEEecCC----------CccceeccCCCccEEEEecccceEEEEccc
Confidence 999998741000001 0 011111000 2233456776 8899999999999999988 7899999999
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCC
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~ 420 (1115)
+.++++++.+|...
T Consensus 160 tF~~~~vl~~H~s~------------------------------------------------------------------ 173 (942)
T KOG0973|consen 160 TFELLKVLRGHQSL------------------------------------------------------------------ 173 (942)
T ss_pred cceeeeeeeccccc------------------------------------------------------------------
Confidence 99888887654332
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCC------cEEEEE--ecCCEEEeeec----ccEEEEEeC
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF------AVQCLC--TFGSQIWVGYM----NGIVQVLDL 486 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~------~V~sla--~dG~~LaSGs~----DGtIrlWD~ 486 (1115)
|-.|.|.|-|+ +||=+.|++|++|+. +=.+.++++++-. -.+-+. |||++|+++-. -.+|.|.+.
T Consensus 174 -VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 174 -VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred -ccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 23345556666 899999999999997 4445555555433 122333 89999999852 457999998
Q ss_pred C-CccccccccccCCEEEEEecC-------C------------EEEeecCCCceEEeeecCCCCCchhhHHHhhcccccc
Q 001245 487 E-GNLLGGWVAHSSPVIKMAVGA-------G------------YIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLY 546 (1115)
Q Consensus 487 ~-G~ll~~l~gH~~~V~sva~dg-------~------------~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re~~y 546 (1115)
. .+.-..|.||.+++.++.|.+ + .+|+||.|++|-||....|.|+--+. ++
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--~l------- 323 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--NL------- 323 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--hh-------
Confidence 6 466788999999999998521 1 47899999999999999888873221 11
Q ss_pred ceecccceEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccCc
Q 001245 547 TRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (1115)
Q Consensus 547 t~~~~irI~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~~ 595 (1115)
-+-.|.=.+|+-.|- ..|.+. -|--|++|+|||=+++
T Consensus 324 ---f~~SI~DmsWspdG~--------~LfacS-~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 324 ---FNKSIVDMSWSPDGF--------SLFACS-LDGTVALIHFEEKELG 360 (942)
T ss_pred ---hcCceeeeeEcCCCC--------eEEEEe-cCCeEEEEEcchHHhC
Confidence 122566667875542 123322 2446999999997654
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=1.7e-17 Score=174.60 Aligned_cols=251 Identities=16% Similarity=0.185 Sum_probs=177.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC--cEEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG--~L~SgS~DgtIrvWd 268 (1115)
.+.|-+|++.-+|..||+||.|+++++|+++... +......+||.+.|-.++++|.. .++++|.|++||+||
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchh------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 6788899999999999999999999999998631 12234568999999999999865 378999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~t 347 (1115)
...+++..... .+ ..-..+..+|++..++.++ +..|..-|+++.+.+..
T Consensus 94 ~r~~k~~~~i~-----------------~~-------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 94 IRSGKCTARIE-----------------TK-------------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred eccCcEEEEee-----------------cc-------------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 99887762210 00 1112233455555554443 56788889888777655
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEE--Eec---ccccccCCCc
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRR--VAA---KGGFGDDNRR 421 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~--~~~---~g~l~~h~~~ 421 (1115)
.+-.-.+ + .+.++......+... .+.|-. +.. -..+..|...
T Consensus 144 ~~~~~e~-n-------------------------------e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 144 EQFKFEV-N-------------------------------EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN 191 (313)
T ss_pred hccccee-e-------------------------------eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc
Confidence 4221111 0 001110001111111 122211 111 1345678878
Q ss_pred eEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccc
Q 001245 422 TEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1115)
Q Consensus 422 V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g 496 (1115)
..||.|+|+|+ +|+||+|..+-|||+ +--|++.+..|..+|..|. .||++|||||+|-.|-|=+++ |..+... .
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-~ 270 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-P 270 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-e
Confidence 88899999998 899999999999999 7899999999999999998 589999999999999999987 7766554 4
Q ss_pred ccCCEEEEEecCCE
Q 001245 497 HSSPVIKMAVGAGY 510 (1115)
Q Consensus 497 H~~~V~sva~dg~~ 510 (1115)
|.++-.+|+.++++
T Consensus 271 ~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKR 284 (313)
T ss_pred ccCCceeEEecCCC
Confidence 67888999988763
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6e-18 Score=177.25 Aligned_cols=241 Identities=13% Similarity=0.201 Sum_probs=165.3
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
.|++-+-+++.+ ....+...+ .-.+.+..|+++++-+ +++++-||++||||+.-...
T Consensus 37 ~G~L~ile~~~~-----~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--------------- 95 (311)
T KOG0277|consen 37 NGRLFILEVTDP-----KGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--------------- 95 (311)
T ss_pred CceEEEEecCCC-----CCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------
Confidence 567777777532 112333333 2367899999999764 78999999999999532111
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCcc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~ 367 (1115)
....++.|. .+|..+-.+.. +..+.+++ |+||||||...++.+.||.+|...+
T Consensus 96 ---Pi~~~kEH~----------~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I------------ 150 (311)
T KOG0277|consen 96 ---PIHKFKEHK----------REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI------------ 150 (311)
T ss_pred ---chhHHHhhh----------hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEE------------
Confidence 111223343 23333332222 22333334 7999999988888777776555443
Q ss_pred ccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC--CcEEEEeCCCeEEEE
Q 001245 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GMIWTGGANGLLLQW 445 (1115)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D--g~laSGS~DgtIklW 445 (1115)
...+++|- +.++++|.|++++||
T Consensus 151 -------------------------------------------------------y~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 151 -------------------------------------------------------YQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred -------------------------------------------------------EEEecCCCCCCeEEEccCCceEEEE
Confidence 33334433 247899999999999
Q ss_pred cC--CCCeeEEeecCCCcEEEEE---ecCCEEEeeecccEEEEEeCC--CccccccccccCCEEEEEecC---CEEEeec
Q 001245 446 DP--NGNRLQDFQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGA---GYIFTLA 515 (1115)
Q Consensus 446 D~--tG~~l~tl~gH~~~V~sla---~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~sva~dg---~~laSgS 515 (1115)
|+ .|+.+. +..|...|+|.. .+-..|++|+.|+.||.||+. ...+..+.||.-.|..|++.+ ..|+|+|
T Consensus 176 dvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 176 DVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS 254 (311)
T ss_pred EecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc
Confidence 99 577766 899998898887 578899999999999999986 567889999999999999754 5799999
Q ss_pred CCCceEEeeecCCCCCchhhHHHhhccccccceecccceEEEEE
Q 001245 516 NHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTW 559 (1115)
Q Consensus 516 ~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TW 559 (1115)
+|-|+||||...+.. .++ ..++..||.---++..+..+|
T Consensus 255 YDmT~riw~~~~~ds---~~e--~~~~HtEFv~g~Dws~~~~~~ 293 (311)
T KOG0277|consen 255 YDMTVRIWDPERQDS---AIE--TVDHHTEFVCGLDWSLFDPGQ 293 (311)
T ss_pred ccceEEecccccchh---hhh--hhhccceEEeccccccccCce
Confidence 999999999875432 222 223566666555555544433
No 96
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9.4e-19 Score=187.02 Aligned_cols=234 Identities=14% Similarity=0.153 Sum_probs=163.4
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcE-EEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L-~SgS~DgtIrv 266 (1115)
+| ...|.-++.+..-.++.|+|.|.|.++|.+++|.| +.++.||.+.|++|+|++.+.| +++|.|+|..|
T Consensus 146 GH-kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C--------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 146 GH-KDGIWHVAADSTQPICGTASADHTARIWSLESGAC--------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred cc-ccceeeehhhcCCcceeecccccceeEEeeccccc--------eeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45 77888888887777999999999999999998654 7789999999999999999984 79999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLK 346 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~ 346 (1115)
|...-.-..-.-..+ .+|... .++.+ ++
T Consensus 217 W~~av~~~vP~~~a~----------------~~hSsE--------eE~e~--sD-------------------------- 244 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAP----------------SDHSSE--------EEEEH--SD-------------------------- 244 (481)
T ss_pred HHHhhcCcCCCCCCC----------------CCCCch--------hhhhc--cc--------------------------
Confidence 974321000000000 001000 00000 00
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
.+. +.. ++..+ +++..+++ +.-.|.+|...|.+.-
T Consensus 245 -----e~~-------~d~-------------d~~~~-------------------sD~~tiRv-Pl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 245 -----EHN-------RDT-------------DSSEK-------------------SDGHTIRV-PLMRLTGHRAVVSACD 279 (481)
T ss_pred -----ccc-------ccc-------------ccccc-------------------cCCceeee-eeeeeeccccceEehh
Confidence 000 000 00000 00000000 0112455666665555
Q ss_pred EcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC--CccccccccccCC
Q 001245 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSP 500 (1115)
Q Consensus 427 ~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~ 500 (1115)
+-..|+ +++||.|.|..+||+ +|++++.|.||....+-++ |.-++++++|.|.|.||||.. -+.+..|+||++.
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 444444 899999999999999 8999999999999887666 677888899999999999975 3567899999999
Q ss_pred EEEEEe-cCCEEEeecCCCceEEeeecC
Q 001245 501 VIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 501 V~sva~-dg~~laSgS~DgtIRlWdl~~ 527 (1115)
|+++.| -+..++|||.|.|||+||+..
T Consensus 360 VTS~vF~~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 360 VTSVVFNTDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred eeEEEEecCCceeecCCCceEEEeeecc
Confidence 999887 467899999999999999975
No 97
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.1e-17 Score=175.96 Aligned_cols=264 Identities=15% Similarity=0.224 Sum_probs=171.3
Q ss_pred CCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC--CCc-EEE
Q 001245 181 TAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWS 257 (1115)
Q Consensus 181 ~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp--dG~-L~S 257 (1115)
+.||. ++| ..-|.|+.||+-|+.+||+|.|++|++||.+.+ .........|++|.++|..|.+-+ .|+ +|+
T Consensus 5 ~~pi~-s~h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 5 MAPID-SGH-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred ccccc-cCC-cceeeeeeecccCceeeeccCCCcEEEEeccCC----CCceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence 34443 355 677899999999999999999999999998642 233556678999999999999964 478 689
Q ss_pred EeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC--CCCEEEeec-CCeE
Q 001245 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSF 334 (1115)
Q Consensus 258 gS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~--~~~~v~S~s-d~tI 334 (1115)
+|.|+||+||.-.. .. +...+. .+.. +. .+.. ..+.|..+.|++ -|-++++++ |+++
T Consensus 79 cS~Drtv~iWEE~~--~~--~~~~~~--~Wv~--~t--tl~D----------srssV~DV~FaP~hlGLklA~~~aDG~l 138 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQE--KS--EEAHGR--RWVR--RT--TLVD----------SRSSVTDVKFAPKHLGLKLAAASADGIL 138 (361)
T ss_pred EecCCceeeeeecc--cc--cccccc--eeEE--EE--Eeec----------CCcceeEEEecchhcceEEEEeccCcEE
Confidence 99999999997531 11 000000 0110 00 0100 114455555544 466777776 7899
Q ss_pred EEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccc
Q 001245 335 ALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG 414 (1115)
Q Consensus 335 ~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~ 414 (1115)
|||++-.---+........+ ... ...
T Consensus 139 RIYEA~dp~nLs~W~Lq~Ei------~~~-------------~~p----------------------------------- 164 (361)
T KOG2445|consen 139 RIYEAPDPMNLSQWTLQHEI------QNV-------------IDP----------------------------------- 164 (361)
T ss_pred EEEecCCccccccchhhhhh------hhc-------------cCC-----------------------------------
Confidence 99997432211111000000 000 000
Q ss_pred cccCCCceEEEEEcCC----CcEEEEeCC-----CeEEEEcC--CCC---eeEEeecCCCcEEEEE--ec-C---CEEEe
Q 001245 415 FGDDNRRTEALTTSID----GMIWTGGAN-----GLLLQWDP--NGN---RLQDFQYLPFAVQCLC--TF-G---SQIWV 474 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~D----g~laSGS~D-----gtIklWD~--tG~---~l~tl~gH~~~V~sla--~d-G---~~LaS 474 (1115)
...+.....||.+++. ..||.|+.+ +.++||.. +|+ .+.++.+|+++|++|+ |. | .+||+
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 0011112223333322 236666655 47999987 452 3456889999999998 43 4 59999
Q ss_pred eecccEEEEEeCCC---------------------ccccccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 475 GYMNGIVQVLDLEG---------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 475 Gs~DGtIrlWD~~G---------------------~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
|+.|| |+||.+++ +.+..+.+|.+.|+.+.+ -|..|+|.|.||+||+|..
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99999 99998652 145678899999999986 5899999999999999974
No 98
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=1.3e-16 Score=188.79 Aligned_cols=335 Identities=18% Similarity=0.264 Sum_probs=219.5
Q ss_pred EEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Q 001245 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL 224 (1115)
Q Consensus 145 l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~ 224 (1115)
+..+++|.+++||+.++..+.+ | ..+ .+.|+|+.=+|.=..+|-|..||+|.+.++..+
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~-----------------f--~~~-~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d- 234 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYT-----------------F--QEF-FSRITAIEQSPALDVVAIGLENGTVIIFNLKFD- 234 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEE-----------------e--ccc-ccceeEeccCCcceEEEEeccCceEEEEEcccC-
Confidence 3346899999999999987753 2 223 578999999998899999999999999999863
Q ss_pred CCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccce
Q 001245 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (1115)
Q Consensus 225 ~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~ 302 (1115)
+.+.+|+--.+.|++++|.-||. |+||...|++-+||++....... ....|.
T Consensus 235 -------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v------------------~~nah~- 288 (910)
T KOG1539|consen 235 -------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV------------------TRNAHY- 288 (910)
T ss_pred -------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee------------------eecccc-
Confidence 34556653369999999999997 68999999999999987433210 011231
Q ss_pred ecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEE--EcCCc--cEEEEEecCCceeeEEeccC---------CCCccc
Q 001245 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALW--DARTR--ELLKVFNIDGQIENRVDMSL---------LPDFAM 368 (1115)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lW--D~~tg--~ll~tl~~~~~~~~~v~~s~---------~~~~~~ 368 (1115)
+.+....+-+....+++++ |+..++| |.-.| .+|+.=.+|.++...+.|-. ..|...
T Consensus 289 ---------~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 289 ---------GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred ---------CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcch
Confidence 1122222333444455544 5666766 54444 34555456665533333321 111100
Q ss_pred c----------ccceE--EEEecCCC---------Cccceeeeeecc---cc-ceEEeccCc--EEEEecc----ccc--
Q 001245 369 E----------DEFKT--KIVTSSKK---------DKAQSSFGFFQR---SR-NAIMGAADA--VRRVAAK----GGF-- 415 (1115)
Q Consensus 369 ~----------~~~~~--~~~~~~~~---------~~~~~~v~f~~~---~~-~~~~Gs~d~--v~~~~~~----g~l-- 415 (1115)
. .+... ......+. ......++|... .| ++++.+.+. ++-|+.. |.+
T Consensus 360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L 439 (910)
T KOG1539|consen 360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL 439 (910)
T ss_pred hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence 0 00000 00000000 111112222211 12 344444442 4445442 222
Q ss_pred -----ccCCCceEEEEEcCCCcE-EEEeCCCeEEEEcC-CCCeeEEe---ecCCCcEEEEEecC--CEEEeeecccEEEE
Q 001245 416 -----GDDNRRTEALTTSIDGMI-WTGGANGLLLQWDP-NGNRLQDF---QYLPFAVQCLCTFG--SQIWVGYMNGIVQV 483 (1115)
Q Consensus 416 -----~~h~~~V~aVa~S~Dg~l-aSGS~DgtIklWD~-tG~~l~tl---~gH~~~V~sla~dG--~~LaSGs~DGtIrl 483 (1115)
......+.+|+.++-|.+ +.|+..|+|-++++ .|-...++ ..|..+|+.|+.|| +.++|++.+|.++.
T Consensus 440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKF 519 (910)
T ss_pred cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEE
Confidence 122356888999999884 68999999999999 88888888 48999999999774 67999999999999
Q ss_pred EeCCCc------------------------------------------cccccccccCCEEEEEe--cCCEEEeecCCCc
Q 001245 484 LDLEGN------------------------------------------LLGGWVAHSSPVIKMAV--GAGYIFTLANHGG 519 (1115)
Q Consensus 484 WD~~G~------------------------------------------ll~~l~gH~~~V~sva~--dg~~laSgS~Dgt 519 (1115)
||..++ ..+.|.||++.|+++++ ||++|+|++.|++
T Consensus 520 w~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred EecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 995421 24467899999999985 8999999999999
Q ss_pred eEEeeecCCCCCchhh
Q 001245 520 IRGWNVTSPGPLDSIL 535 (1115)
Q Consensus 520 IRlWdl~~p~pld~~i 535 (1115)
||+||+.+...+|.++
T Consensus 600 Ir~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLL 615 (910)
T ss_pred EEEEeccCcceeeeEe
Confidence 9999999877766554
No 99
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.78 E-value=1.2e-19 Score=192.98 Aligned_cols=183 Identities=28% Similarity=0.434 Sum_probs=118.1
Q ss_pred cccCcceEEEEEEEecEEEEEEeecccccchhH-----------HHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhh
Q 001245 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV-----------NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQM 741 (1115)
Q Consensus 673 ~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~-----------~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~ 741 (1115)
.++.||-.-.|++|++..|.|||.||--...|+ ..|.+.+.-+++.|.
T Consensus 153 ~~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~--------------------- 211 (391)
T KOG1976|consen 153 ANQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELD--------------------- 211 (391)
T ss_pred hhhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHH---------------------
Confidence 478999999999999999999999994333332 334444444444431
Q ss_pred cccCCCCCCCcccCCCCcCCcceEEEecccccccCCCChHH------------------HHHH---------------Hh
Q 001245 742 LRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDE------------------ARDF---------------IS 788 (1115)
Q Consensus 742 ~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~------------------v~~~---------------i~ 788 (1115)
..=...|.+|.||||||||+..+.-+ +.++ |+
T Consensus 212 ---------------~~~~~~~~~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vE 276 (391)
T KOG1976|consen 212 ---------------EEGLRNDAIFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVE 276 (391)
T ss_pred ---------------hhccCceEEEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEee
Confidence 00124579999999999999522111 1011 12
Q ss_pred hcChhHHhcchHHHHH--------HhcCCcccC-ccccCcccCCCccccccccCCcccccCCccccccccceeeeecCCC
Q 001245 789 QRCFDWLRERDQLRAE--------MEAGNVFQG-MREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRS 859 (1115)
Q Consensus 789 ~~~~~~Ll~~DQL~~~--------~~~~~~f~g-f~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~ 859 (1115)
++.|+ -..+|-+... -++-..|+. +.|..|.|||||.|..+..|..+| .+.|+||||||||+..+..
T Consensus 277 kk~FD-yfnh~~f~d~~r~~~~~~dkEl~nf~~kl~E~~i~FpPsypysed~~~~E~~---m~TrcPAWcDRILmn~~a~ 352 (391)
T KOG1976|consen 277 KKRFD-YFNHDWFFDLGRGMVKRYDKELANFAFKLKEETIFFPPSYPYSEDDSGKEEF---MRTRCPAWCDRILMNDRAN 352 (391)
T ss_pred hhhcc-hhhhHHHHHcCchhhhhcchHHHHHHHHHhheeecCCCCCCCCcCccchHHH---HhccChHhhhhhhcCccHH
Confidence 33444 2222322111 011124544 789999999999999865444445 6899999999999998765
Q ss_pred cccccccCCCccccceeeeeec-cccccCCCCceeeEEEEE
Q 001245 860 DLASECSLECPVASSILRYEAC-MDVTDSDHKPVRCIFSVD 899 (1115)
Q Consensus 860 ~~~~~~~~~~p~~~~~~~Y~s~-~~~~~SDHkPV~a~f~v~ 899 (1115)
..+...+ .|| +.+.|.+. ++..+-|||||...|++-
T Consensus 353 eLv~~~e-~e~---~~~~Y~~vg~e~c~GdHKpVfl~~~i~ 389 (391)
T KOG1976|consen 353 ELVKHDE-FEA---SGLYYGLVGEEKCVGDHKPVFLHASIC 389 (391)
T ss_pred HHhhccc-cCc---ccceecccccccccCCCcceEEEEeec
Confidence 5443222 122 34567765 578889999999999863
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.77 E-value=7.2e-17 Score=179.40 Aligned_cols=269 Identities=16% Similarity=0.155 Sum_probs=209.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
...++++...+....+.||+.|.++.++|...+ ..+.+|+||.-.|+++.|+|+.. ++++|.|..||||..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh--------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc
Confidence 456788888887789999999999999998763 23568999999999999999987 689999999999998
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
....+.. .++.|. .+|..+...+.+..+.+++ ++++...|.++|.++...
T Consensus 291 ~~~s~~~-------------------~~~~h~----------~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 291 PLSSEPT-------------------SSRPHE----------EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred ccccCcc-------------------cccccc----------ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 5532211 112333 5666777777777777666 688999999999988765
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEE-Eecc-----cccccCCCce
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR-VAAK-----GGFGDDNRRT 422 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~-~~~~-----g~l~~h~~~V 422 (1115)
+..+. +...++..|.+++-...+|..|++.+ |+.+ ..|.+|++.|
T Consensus 342 s~~~s-----------------------------~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 342 SDETS-----------------------------DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV 392 (506)
T ss_pred eeccc-----------------------------cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence 44211 11223457888888888888887554 5443 5688999999
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCC-CcEEEEEe--cCCEEEeeecccEEEEEeCC---Ccccccc
Q 001245 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQCLCT--FGSQIWVGYMNGIVQVLDLE---GNLLGGW 494 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~-~~V~sla~--dG~~LaSGs~DGtIrlWD~~---G~ll~~l 494 (1115)
.+|+|+.+|+ +++++.|+.|++||+ .-+..+++.-.. ..|.++.+ .|++|+.++.|=+|.+.+-. .+++..+
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL 472 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh
Confidence 9999999999 899999999999999 666677765433 36888885 49999999988888888832 5788889
Q ss_pred ccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 495 VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 495 ~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
.-|++..+.+.| +.++++++|-|...|+..+
T Consensus 473 ~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 473 ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhcccccceeeecccceEEeeccchhheEEeec
Confidence 999999999998 4689999999999888654
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=2e-16 Score=176.13 Aligned_cols=251 Identities=13% Similarity=0.126 Sum_probs=168.3
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L-aSGS~DgtIrlWdl~~~~~~ 226 (1115)
+.|++|++||++++..... + . . ...+.+++++|+|+.+ ++++.|++|++||+.++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~-----------------~-~-~--~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--- 63 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRT-----------------F-P-V--GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--- 63 (300)
T ss_pred cCCCEEEEEECCCCceEEE-----------------E-E-C--CCCCCceEECCCCCEEEEEECCCCeEEEEECCCC---
Confidence 5799999999998875542 1 1 1 2235679999999876 67889999999999863
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCc-EE-EEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceec
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~-SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~ 304 (1115)
+....+..|.. +..++|+|+|+ |+ +++.|++|++||+.+......+ ..+
T Consensus 64 -----~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~-------------------~~~---- 114 (300)
T TIGR03866 64 -----EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI-------------------PVG---- 114 (300)
T ss_pred -----cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe-------------------eCC----
Confidence 22344555544 46789999997 54 5667999999999775432110 000
Q ss_pred ceeeeecCCeEEEEEeCCCCEEEeecC--CeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCC
Q 001245 305 GFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1115)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~S~sd--~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~ 382 (1115)
.....+++++++..++.+.. ..+.+||..+++++..+...
T Consensus 115 -------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------------------- 156 (300)
T TIGR03866 115 -------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD------------------------------- 156 (300)
T ss_pred -------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-------------------------------
Confidence 12234666777777766553 34677888776654322100
Q ss_pred CccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EE-EEeCCCeEEEEcC-CCCeeEEeecCC
Q 001245 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQYLP 459 (1115)
Q Consensus 383 ~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-la-SGS~DgtIklWD~-tG~~l~tl~gH~ 459 (1115)
..+..+++++||. ++ ++..|+.|++||+ ++++++.+..+.
T Consensus 157 -------------------------------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 157 -------------------------------------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred -------------------------------------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 0123467788887 54 4456999999999 788877765332
Q ss_pred -----Cc--EEEEE--ecCCEEEee-ecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEee-cCCCceEEeee
Q 001245 460 -----FA--VQCLC--TFGSQIWVG-YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTL-ANHGGIRGWNV 525 (1115)
Q Consensus 460 -----~~--V~sla--~dG~~LaSG-s~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSg-S~DgtIRlWdl 525 (1115)
.. ...++ ++|++++++ ..+++|.+||++ ++++..+ .|...+.++++ +|++|+++ +.+++|++||+
T Consensus 200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 11 22343 789986654 456789999987 6655444 34456778774 88898876 57999999998
Q ss_pred cC
Q 001245 526 TS 527 (1115)
Q Consensus 526 ~~ 527 (1115)
.+
T Consensus 279 ~~ 280 (300)
T TIGR03866 279 AA 280 (300)
T ss_pred CC
Confidence 76
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=6.3e-17 Score=173.34 Aligned_cols=257 Identities=17% Similarity=0.262 Sum_probs=176.7
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
...|.+|+||| +..+++.||-||+||+|++... +.. . -.....|.+||.+++|+.||. +++|+.|+.+|+||
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~----g~~-~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS----GQL-V-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecC----Ccc-c-chhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 45788999999 5777889999999999999751 111 1 134567999999999999997 78999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEeec-CCeEEEEEcCCccEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
+.+++... +..|. ..++.+..-+. ...|++++ |+|||.||.+.-..+
T Consensus 101 L~S~Q~~~--------------------v~~Hd----------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 101 LASGQVSQ--------------------VAAHD----------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred ccCCCeee--------------------eeecc----------cceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 99875431 11233 45555555333 34778877 699999999987777
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEE
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aV 425 (1115)
.++...+++ .+.
T Consensus 151 ~t~~LPeRv--------------------------------------------------------------------Ya~ 162 (347)
T KOG0647|consen 151 ATLQLPERV--------------------------------------------------------------------YAA 162 (347)
T ss_pred eeeecccee--------------------------------------------------------------------eeh
Confidence 666432222 000
Q ss_pred EEcCCCcEEEEeCCCeEEEEcC-CCCee-EEeec-CCCcEEEEE--ecCCEEEeeecccEEEEEeCC-C--ccccccccc
Q 001245 426 TTSIDGMIWTGGANGLLLQWDP-NGNRL-QDFQY-LPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-G--NLLGGWVAH 497 (1115)
Q Consensus 426 a~S~Dg~laSGS~DgtIklWD~-tG~~l-~tl~g-H~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G--~ll~~l~gH 497 (1115)
-. --..++.+..++.|.++++ ++.-. +.+.. -...+.||+ .|..-.|.|+-.|.+-+-.++ + +.--+|+.|
T Consensus 163 Dv-~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 163 DV-LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred hc-cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 00 0013567788999999999 54211 11111 122477887 566666999999999999886 4 344567888
Q ss_pred cC---------CEEEEEecC--CEEEeecCCCceEEeeecCCCCCchhhHHHhhccccccceecccceEEEEEEeCCCC
Q 001245 498 SS---------PVIKMAVGA--GYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGR 565 (1115)
Q Consensus 498 ~~---------~V~sva~dg--~~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~ 565 (1115)
.. .|++|+|.+ ..++|+|.||+.-.||-.. +.+|+.. +..+-.|-+++||-+|..
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda--------r~kLk~s-----~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA--------RTKLKTS-----ETHPQPITCCSFNRNGSI 307 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh--------hhhhhcc-----CcCCCccceeEecCCCCE
Confidence 73 344566755 4699999999999999643 2333321 345567899999988653
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.76 E-value=9.6e-17 Score=195.56 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=192.5
Q ss_pred eEEEEEe-CCeEEE--e--CCCCEEEEeCCCCcccccccccccccCCCCCC--CCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 135 LRTIVCT-EEQLWA--G--GENGLRVWNLKELYDESESDSVSVSKSKGEDG--TAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 135 l~~l~~~-~~~l~a--g--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~--~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+-++.++ ++..+| | .|+++++|+.+.-.... ...++. -..+...-| .+.|+|+.|++||++||
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~---------~~~~~~l~k~l~~m~~h-~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK---------EEKNENLPKHLCTMDDH-DGSVNCVRFSPDGSYLA 85 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchh---------hhhhcccchhheeeccc-cCceeEEEECCCCCeEe
Confidence 4466666 555666 3 79999999976432111 011111 011222345 78999999999999999
Q ss_pred EEeCCCeEEEEECCCC----CCCC-C-----CCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceee
Q 001245 208 SGHRDGRIMCWKMNAR----LLDS-D-----DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL 276 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~----~~~~-~-----~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l 276 (1115)
|||.|+.|.+|..+.. .+.+ + ...+.+..|+||.+-|..|+++|++. |+|+|.|++|-||+..+.+++
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~- 164 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL- 164 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee-
Confidence 9999999999998731 0000 0 01124567899999999999999998 789999999999999887443
Q ss_pred ccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCC---
Q 001245 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG--- 352 (1115)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~--- 352 (1115)
..+++|. +.|+-+.++|-|..+++-+ |++|++|.+.+-.+.++....-
T Consensus 165 ------------------~vl~~H~----------s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 165 ------------------KVLRGHQ----------SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred ------------------eeeeccc----------ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence 2346676 6788899999999999865 6899999976655666553211
Q ss_pred ---ceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 353 ---QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 353 ---~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
....+...||++....... .-.....++...+++ -|...-.|+||...+++++|+|
T Consensus 217 ~~~T~f~RlSWSPDG~~las~n---------A~n~~~~~~~IieR~------------tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPN---------AVNGGKSTIAIIERG------------TWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred CCcceeeecccCCCcCeecchh---------hccCCcceeEEEecC------------CceeeeeeecCCCceEEEEeCh
Confidence 1123444444433221110 000000011111110 1333456889999999999886
Q ss_pred C------C------------cEEEEeCCCeEEEEcC-CCCeeEEee-cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 430 D------G------------MIWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 430 D------g------------~laSGS~DgtIklWD~-tG~~l~tl~-gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
- . .+|+||.|++|-||.. .-+++-... --..+|..++ +||-.|..+|.||+|.+...+
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 2 1 3578999999999987 334432211 1234788888 789999999999999999864
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.8e-17 Score=174.73 Aligned_cols=270 Identities=17% Similarity=0.151 Sum_probs=177.4
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC--------CCCEEEEEEeCCCc--EEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH--------RGPVLSLCISSYGD--LWS 257 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH--------~~~V~sVafSpdG~--L~S 257 (1115)
+| ...|+||+|+.||+.|||.+.|++||+|++.. | +.++| -+--+.|+|+||-+ +++
T Consensus 84 gH-~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D--------F----~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 84 GH-KKEVTDVAFSSDGKKLATISGDRSIRLWDVRD--------F----ENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred cc-CCceeeeEEcCCCceeEEEeCCceEEEEecch--------h----hhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 46 78999999999999999999999999999873 1 12233 12457899999987 568
Q ss_pred EeCCCcEEEEeCCCcc---eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCe
Q 001245 258 GSEGGGIKIWPWEAIE---KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLS 333 (1115)
Q Consensus 258 gS~DgtIrvWdl~t~~---~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~t 333 (1115)
.-...+++++.+...+ ..+.+.....+ --.+-|. -++..+.....+..|.|++ |.+
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~----------~f~~kh~----------v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNL----------EFERKHQ----------VDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred EccCCEEEEEEeeecccCCCCccccccccc----------ccchhcc----------cceEEEeecCCceEEEEecCCCc
Confidence 8888999999875421 11111110000 0001122 3455556666666777776 567
Q ss_pred EEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEE-eccCcEEEEec-
Q 001245 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAADAVRRVAA- 411 (1115)
Q Consensus 334 I~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-Gs~d~v~~~~~- 411 (1115)
|-|||++ |++|.+.....--....+.|| +++.+++ |-.--|+.|..
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP-------------------------------~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSP-------------------------------DGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCC-------------------------------CCcEEEEecCCCCceEEEEE
Confidence 9999999 888877632111001112222 2322221 11112333432
Q ss_pred ---cc---------ccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCC-----CC---eeEEee-----cCCCcE-EE
Q 001245 412 ---KG---------GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-----GN---RLQDFQ-----YLPFAV-QC 464 (1115)
Q Consensus 412 ---~g---------~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~t-----G~---~l~tl~-----gH~~~V-~s 464 (1115)
+| .|.||...|.+.+||++.+ ++|.|.||++||||.+ |+ .|++.. ....++ .+
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 12 3678999999999999987 8999999999999973 32 333331 123344 35
Q ss_pred EEecCCEEEeeecccEEEEEeCC-Cccccccc-cccCCEEEEEe--cCCEEEeecCCCceEEee
Q 001245 465 LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWV-AHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 465 la~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~-gH~~~V~sva~--dg~~laSgS~DgtIRlWd 524 (1115)
++|.|+.||.+... +++++..+ |+..-++. .|.+.|.+|++ +|++++|++ |.-+|+..
T Consensus 339 lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 339 LSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 66999998877544 69999987 87666654 79999999985 899999997 66788764
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.1e-17 Score=185.47 Aligned_cols=238 Identities=17% Similarity=0.255 Sum_probs=157.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
.++|.|++-+|.|.+|+-|.--|.|.+|.+.+|. .+..|.+|-.+|+++.|+.||. |+|||.||.|.+|++
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc--------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 4579999999999999999899999999999853 3557899999999999999998 789999999999998
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC--CCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~--~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
... +.....+..+- +-.+.+|. -.|..+.++. .+.+|++++ |.|+|+||+..|.+|.
T Consensus 153 ~~l-----v~a~~~~~~~p-----~~~f~~Ht----------lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 153 TDL-----VSADNDHSVKP-----LHIFSDHT----------LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred Eee-----cccccCCCccc-----eeeeccCc----------ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 431 11111111000 00112233 2344455443 457788876 8999999999999887
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
++.-...+ .+ ++..+-...+.+|..++.+-...--.
T Consensus 213 ti~fp~si-~a-------------------------------v~lDpae~~~yiGt~~G~I~~~~~~~------------ 248 (476)
T KOG0646|consen 213 TITFPSSI-KA-------------------------------VALDPAERVVYIGTEEGKIFQNLLFK------------ 248 (476)
T ss_pred EEecCCcc-ee-------------------------------EEEcccccEEEecCCcceEEeeehhc------------
Confidence 75311111 11 11111122233333332211100000
Q ss_pred EcCCCcEEEEeCCCeEEEEcCCCCeeEEeecCCC--cEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCE
Q 001245 427 TSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLPF--AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (1115)
Q Consensus 427 ~S~Dg~laSGS~DgtIklWD~tG~~l~tl~gH~~--~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V 501 (1115)
+..-+.+=..|-.+..+..++.+.||.+ .|+|++ .||..|+||+.||+|.|||+. -++++++.--.++|
T Consensus 249 ------~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 249 ------LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV 322 (476)
T ss_pred ------CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence 0000111123444445566788999999 999999 799999999999999999987 57888887667888
Q ss_pred EEEEe
Q 001245 502 IKMAV 506 (1115)
Q Consensus 502 ~sva~ 506 (1115)
+-+.+
T Consensus 323 tnL~i 327 (476)
T KOG0646|consen 323 TNLQI 327 (476)
T ss_pred ceeEe
Confidence 88775
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=5.1e-17 Score=182.14 Aligned_cols=250 Identities=18% Similarity=0.178 Sum_probs=181.0
Q ss_pred EEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCC-CcceeEEEEeeeeeeeecccceecceeeeecC
Q 001245 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP-EERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1115)
Q Consensus 235 ~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~-~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~ 312 (1115)
.....|.-+|++|+++||++ .+|+|.|++|-=|++.++....-+-+ ++. + ...+..++-+. ..+..
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-~-----k~~~~~~k~~r------~~h~k 203 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-L-----KSHGNPLKESR------KGHVK 203 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-h-----hhccCCCCccc------ccccc
Confidence 34567999999999999987 79999999999999998764311100 000 0 00111111000 02336
Q ss_pred CeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeee
Q 001245 313 DIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1115)
Q Consensus 313 ~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 391 (1115)
.+.++|.++++..+++++ |.-|.|||.+|++.+++|.+|...+.. ++|
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~-------------------------------L~f 252 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSS-------------------------------LAF 252 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceee-------------------------------eee
Confidence 788999999999999987 677999999999999999877655322 233
Q ss_pred eccccceEEeccC-cEEEEecc-----cccccCCCceEEEEEcCCCcEEE-EeCCCeEEEEcCCCCeeEEeecCCCcEEE
Q 001245 392 FQRSRNAIMGAAD-AVRRVAAK-----GGFGDDNRRTEALTTSIDGMIWT-GGANGLLLQWDPNGNRLQDFQYLPFAVQC 464 (1115)
Q Consensus 392 ~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~laS-GS~DgtIklWD~tG~~l~tl~gH~~~V~s 464 (1115)
-....++++++.| +++.|... -+|.+|...|..|-...-++++| |+.|+|+++|++.-+-.-.+.+|.+.+-|
T Consensus 253 r~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidc 332 (479)
T KOG0299|consen 253 RKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDC 332 (479)
T ss_pred ecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeee
Confidence 3334455666665 56667653 36778999999888777778765 55899999999944444467899999999
Q ss_pred EE-ecCCEEEeeecccEEEEEeCC-Ccccccc------------ccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 465 LC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGW------------VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 465 la-~dG~~LaSGs~DGtIrlWD~~-G~ll~~l------------~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
++ .+...+++||.+|.|.||++. -+.+.+. ..|..||++|+. ...+++|||.+|.||+|-+..
T Consensus 333 v~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 333 VAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 99 588999999999999999964 3322211 122348999984 567999999999999999865
No 107
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.7e-18 Score=200.13 Aligned_cols=221 Identities=22% Similarity=0.331 Sum_probs=174.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
...|.|+.+-..++.+++|+.|-.+-+|.+..- ..+..|.||..+|.||.|+++-. |++|+.|||||+||+
T Consensus 28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhceeeeeccceeeccCCCceeeccccccCC--------chhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 567778887777899999999999999998642 23456899999999999998765 679999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
+.++... .|.+|. .++..+.+.|.+...++++ |..+++||.+-.-|.+++
T Consensus 100 eeAk~vr-------------------tLtgh~----------~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 100 EEAKIVR-------------------TLTGHL----------LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhhhhhh-------------------hhhccc----------cCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 8754321 223343 3445566777776665554 567999998755555554
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
+ +|...|..+.|+
T Consensus 151 ~-------------------------------------------------------------------s~~~vv~~l~ls 163 (825)
T KOG0267|consen 151 K-------------------------------------------------------------------SHTRVVDVLRLS 163 (825)
T ss_pred c-------------------------------------------------------------------CCcceeEEEeec
Confidence 3 244456778899
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s 503 (1115)
|||. +++|++|.+++|||+ .|+.+.+|.+|.+.|.++. +..-.|++|+.|++|++||++ -+.+.....-...|.+
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 9997 789999999999999 8999999999999999998 456789999999999999998 5777777777889999
Q ss_pred EEe--cCCEEEeec
Q 001245 504 MAV--GAGYIFTLA 515 (1115)
Q Consensus 504 va~--dg~~laSgS 515 (1115)
+++ +|..+++|-
T Consensus 244 ~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 244 LAFNPDGKIVLSGE 257 (825)
T ss_pred eeecCCceeeecCc
Confidence 986 566666663
No 108
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.74 E-value=5.5e-17 Score=187.25 Aligned_cols=301 Identities=15% Similarity=0.160 Sum_probs=185.2
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
-.||.|.+.|...-.... |+......-.| -+.|..+++-|.-.+|+|++.|.|||+||+.++.+.
T Consensus 71 dE~G~i~l~dt~~~~fr~-------------ee~~lk~~~aH-~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~- 135 (720)
T KOG0321|consen 71 DEDGGIILFDTKSIVFRL-------------EERQLKKPLAH-KNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV- 135 (720)
T ss_pred cCCCceeeecchhhhcch-------------hhhhhcccccc-cceeEeeccCCCceeEEEccCCceeeeeeeccceee-
Confidence 378899999876432210 11100111245 778999999998889999999999999999975442
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcce-eecc---CCCcceeEEEEeeeeeeeecccc
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK-ALSL---KPEERHTAALIVERSYIDLRSHL 301 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~-~l~~---~~~~~~~~a~~~~~~~~~l~~h~ 301 (1115)
....+.||.+.|.++||.|+.. +++|+.||.|.|||+.-... .+.. .....|-.+- ..-....-+.+.
T Consensus 136 -----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~kr~~k 209 (720)
T KOG0321|consen 136 -----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLKKRIRK 209 (720)
T ss_pred -----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhhccccc
Confidence 1235789999999999999886 57999999999999853210 0000 0000000000 000000001111
Q ss_pred eecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEec
Q 001245 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (1115)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~ 379 (1115)
....- ....+.|..+++- +...|++++ |++|||||+++.........-+ .+. +-..
T Consensus 210 ~kA~s-~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~---------------~~~-----~~t~ 267 (720)
T KOG0321|consen 210 WKAAS-NTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRG---------------SDK-----YPTH 267 (720)
T ss_pred ccccc-CceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCc---------------ccC-----ccCc
Confidence 11110 0111235555554 456777765 7899999998655431110000 000 0000
Q ss_pred CCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcCCC---CeeEEe
Q 001245 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG---NRLQDF 455 (1115)
Q Consensus 380 ~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~tG---~~l~tl 455 (1115)
.+ ....+.++....-| +|.+.+.|++|.+|++.+ ..+..+
T Consensus 268 sk------------------------------------rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 268 SK------------------------------------RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred cc------------------------------------ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence 00 00112233332323 476667799999999943 466667
Q ss_pred ecCCCc---EEEEE-ecCCEEEeeecccEEEEEeCC--CccccccccccCCEEEEEecC---CEEEeecCCCceEEeeec
Q 001245 456 QYLPFA---VQCLC-TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGA---GYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 456 ~gH~~~---V~sla-~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~sva~dg---~~laSgS~DgtIRlWdl~ 526 (1115)
.+|... |.++. +||.+|+||+.|+.+.+|.+. ......+.||+-.|++|.+.. .-++|+|.|.++++|++.
T Consensus 312 sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 312 SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 766543 33333 899999999999999999987 466788999999999998633 458899999999999994
Q ss_pred C
Q 001245 527 S 527 (1115)
Q Consensus 527 ~ 527 (1115)
.
T Consensus 392 ~ 392 (720)
T KOG0321|consen 392 N 392 (720)
T ss_pred C
Confidence 3
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.3e-17 Score=187.92 Aligned_cols=214 Identities=21% Similarity=0.257 Sum_probs=166.7
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~ 228 (1115)
.+++|.+||+++....+. ....| ..-|.|+++. +..+.+|+.||.|..+|+.....
T Consensus 237 ~~g~v~iwD~~~~k~~~~------------------~~~~h-~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--- 292 (484)
T KOG0305|consen 237 SDGTVQIWDVKEQKKTRT------------------LRGSH-ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--- 292 (484)
T ss_pred cCCeEEEEehhhcccccc------------------ccCCc-CceeEEEecc--CceEEEecCCCcEEEEEEecchh---
Confidence 789999999998776653 11115 6789999997 67899999999999999986321
Q ss_pred CCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceeccee
Q 001245 229 DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS 307 (1115)
Q Consensus 229 ~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~ 307 (1115)
...++++|+..|..+++++|+. ||||+.|+.+.|||....+..+ .+..|.
T Consensus 293 ----~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~-------------------~~~~H~------ 343 (484)
T KOG0305|consen 293 ----VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF-------------------TFTEHT------ 343 (484)
T ss_pred ----hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-------------------EEeccc------
Confidence 1225899999999999999997 8999999999999985433322 123344
Q ss_pred eeecCCeEEEEEeC-CCCEEEeec---CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCC
Q 001245 308 SILTSDIKNLLSDH-SRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (1115)
Q Consensus 308 ~~~s~~v~~las~~-~~~~v~S~s---d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (1115)
+.|+.++.+| ....|++++ |++|++||..+|++++.....+|
T Consensus 344 ----aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ------------------------------ 389 (484)
T KOG0305|consen 344 ----AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ------------------------------ 389 (484)
T ss_pred ----eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc------------------------------
Confidence 6788888876 456777765 68899999999998876533333
Q ss_pred ccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EE--EEeCCCeEEEEcC-CCCeeEEeecCC
Q 001245 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW--TGGANGLLLQWDP-NGNRLQDFQYLP 459 (1115)
Q Consensus 384 ~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-la--SGS~DgtIklWD~-tG~~l~tl~gH~ 459 (1115)
|..|.+++... |+ -|..++.|.||+. +-+.+..+.+|.
T Consensus 390 --------------------------------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~ 431 (484)
T KOG0305|consen 390 --------------------------------------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT 431 (484)
T ss_pred --------------------------------------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence 33344555442 43 3556778999999 788999999999
Q ss_pred CcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 460 FAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 460 ~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
..|..++ |||..+++|+.|.|+++|++=
T Consensus 432 ~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 432 SRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred ceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 9999998 899999999999999999974
No 110
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.74 E-value=2.7e-17 Score=175.89 Aligned_cols=248 Identities=17% Similarity=0.209 Sum_probs=173.6
Q ss_pred ceEEeecCCCCEEEEEEeCCCcE-EEEeCCCcEEEEeCCCcce------eeccCCCcceeEEEEeeeeeeeecccceecc
Q 001245 233 EVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEK------ALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1115)
Q Consensus 233 ~~~~l~GH~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~t~~~------~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~ 305 (1115)
+...+..|++++.+-+||+||.| ++||.|..|||.|++.... ......+.+|- ....+..|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hP-------vIRTlYDH~---- 172 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHP-------VIRTLYDHV---- 172 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCc-------eEeehhhcc----
Confidence 35567899999999999999995 7999999999999974211 00000011110 011223344
Q ss_pred eeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCc
Q 001245 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1115)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (1115)
.+|.+|.+.|-...|+|++ |++||++|...-..-+
T Consensus 173 ------devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr-------------------------------------- 208 (430)
T KOG0640|consen 173 ------DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR-------------------------------------- 208 (430)
T ss_pred ------CcccceeecchhheEEeccCCCeEEEEecccHHHHH--------------------------------------
Confidence 7888999998888888877 7899999953100000
Q ss_pred cceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEe---ecCC
Q 001245 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF---QYLP 459 (1115)
Q Consensus 385 ~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl---~gH~ 459 (1115)
+ +. ...+...|.++.|.|.|. |+.|..--+++|||+ +-+|.-.- ..|+
T Consensus 209 A---~K------------------------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 209 A---FK------------------------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred H---HH------------------------HhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 0 00 112344678899999998 677777789999999 66765432 4699
Q ss_pred CcEEEEE--ecCCEEEeeecccEEEEEe-CCCccccccc-cccC-CEEEEEe--cCCEEEeecCCCceEEeeecCCCCCc
Q 001245 460 FAVQCLC--TFGSQIWVGYMNGIVQVLD-LEGNLLGGWV-AHSS-PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLD 532 (1115)
Q Consensus 460 ~~V~sla--~dG~~LaSGs~DGtIrlWD-~~G~ll~~l~-gH~~-~V~sva~--dg~~laSgS~DgtIRlWdl~~p~pld 532 (1115)
+.|++|. +.|++-++||.||.|+||| +.++|+.++. +|.+ .|.+..| +|+|+.|.+.|.+|++|.+.+..++.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 9999998 6799999999999999999 5689998875 7876 4555554 89999999999999999998866541
Q ss_pred h-----------hhHHHhhccccccc-eecccceEEEEEEeC
Q 001245 533 S-----------ILCKELAGKEFLYT-RMENLKILAGTWNVG 562 (1115)
Q Consensus 533 ~-----------~i~~~l~~re~~yt-~~~~irI~v~TWNv~ 562 (1115)
. .-.+.......+|. .+.+-...+++||--
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence 1 11122222333333 455667889999864
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=6e-17 Score=181.88 Aligned_cols=278 Identities=14% Similarity=0.195 Sum_probs=196.2
Q ss_pred cccceeeEEEEEe--CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE
Q 001245 129 TQIGCFLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 129 ~~~~~~l~~l~~~--~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L 206 (1115)
-.+|..+.+.+.+ ...+|.|+.+.|||||+....... -+...++.. . .+-+.++.+.|||+.|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~------------PvsqLdcl~--r-dnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKS------------PVSQLDCLN--R-DNYIRSCKLLPDGRTL 480 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCC------------ccccccccC--c-ccceeeeEecCCCceE
Confidence 4466666555554 667888999999999986432111 122222222 1 3467788999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcE-EEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
++|+.-.++-+||+...+. ..+ ..+.--.-.-.++++|||.++ +|+-.||.|+|||+......
T Consensus 481 ivGGeastlsiWDLAapTp----rik--aeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V---------- 544 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP----RIK--AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV---------- 544 (705)
T ss_pred EeccccceeeeeeccCCCc----chh--hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee----------
Confidence 9999999999999986321 111 122222234578999999995 79999999999999775332
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
-.+.||. +-+.|+..+++|.+||+++ |.++|-||+++|..++-.. |+
T Consensus 545 ---------rqfqGht----------DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----------F~--- 592 (705)
T KOG0639|consen 545 ---------RQFQGHT----------DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----------FS--- 592 (705)
T ss_pred ---------ecccCCC----------CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----------hh---
Confidence 1245665 5578899999999999988 8999999999887553210 00
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEE
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIk 443 (1115)
..|.++...|.+. |+.|-+++.+.
T Consensus 593 -------------------------------------------------------SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 593 -------------------------------------------------------SQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred -------------------------------------------------------hhheecccCCCccceeeecccCcEE
Confidence 1122233345554 77888888888
Q ss_pred EEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE--EEecCCEEEeecCCC
Q 001245 444 QWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK--MAVGAGYIFTLANHG 518 (1115)
Q Consensus 444 lWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s--va~dg~~laSgS~Dg 518 (1115)
+-..++.....+.-|..-|.+|. +.|++++|.+.|.-+-.|-.- |..+-..+. ++.|++ |.+|.++|+|||.|+
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCc
Confidence 88888877777778888888887 579999999999988899875 655544443 345655 567899999999998
Q ss_pred ceEEeee
Q 001245 519 GIRGWNV 525 (1115)
Q Consensus 519 tIRlWdl 525 (1115)
...++.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 8877765
No 112
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.74 E-value=9.1e-17 Score=169.12 Aligned_cols=238 Identities=15% Similarity=0.130 Sum_probs=169.2
Q ss_pred EEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCC
Q 001245 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (1115)
Q Consensus 235 ~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~ 313 (1115)
+.+++|...|.+|+++.+|. |+|||.|+++++|+++...... ....++|. +.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-----------------~~~~~gh~----------~s 66 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-----------------ELVYRGHT----------DS 66 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-----------------hhcccCCC----------cc
Confidence 45789999999999999996 9999999999999998753221 12235565 44
Q ss_pred eEEEEEeCC-CCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeee
Q 001245 314 IKNLLSDHS-RAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1115)
Q Consensus 314 v~~las~~~-~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 391 (1115)
|-.++.++. ...++++ +|++|++||++++++.......+.- ..+.+
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en--------------------------------i~i~w 114 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN--------------------------------INITW 114 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc--------------------------------eEEEE
Confidence 455555543 3445554 5789999999999998766432221 12244
Q ss_pred eccccceEEeccC-cEEEEecccccc----cCCCceEEEEEcCCCcE-EEEeCCCeEEEEcC-CCCeeEEeecCCCcEEE
Q 001245 392 FQRSRNAIMGAAD-AVRRVAAKGGFG----DDNRRTEALTTSIDGMI-WTGGANGLLLQWDP-NGNRLQDFQYLPFAVQC 464 (1115)
Q Consensus 392 ~~~~~~~~~Gs~d-~v~~~~~~g~l~----~h~~~V~aVa~S~Dg~l-aSGS~DgtIklWD~-tG~~l~tl~gH~~~V~s 464 (1115)
++++..++.|..| .+.-++....-. ...-.++-++++.++.+ .--...|+|.|-.. .-++++++++|+..-.|
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 4555555544433 333333211000 11224555666666553 44455799999998 88999999999876667
Q ss_pred EE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCCCC
Q 001245 465 LC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 465 la--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
|. |+|+++|+|+.|-.+-|||++ --|++.+.-|.-+|..|.| ||++|||||.|..|-|=++.++..+
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 66 789999999999999999997 5678899999999999986 8999999999999977776665443
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.5e-16 Score=167.57 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001245 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 142 ~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~ 221 (1115)
+..|.++.|+++|++|+........ | .| ..|+++++|-++ ..++||+-||.||..|+.
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~-----------------~---~~-~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLK-----------------F---KH-GAPLLDCAFADE-STIVTGGLDGQVRRYDLN 83 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhh-----------------e---ec-CCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence 3344457999999999987754442 2 34 679999999874 578999999999999999
Q ss_pred CCCCCCCCCCcceEEeecCCCCEEEEEEeCC-CcEEEEeCCCcEEEEeCCC
Q 001245 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 222 ~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~L~SgS~DgtIrvWdl~t 271 (1115)
+++ ...+..|.++|+||.+++. |.++|||+|++||+||...
T Consensus 84 ~~~---------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 84 TGN---------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CCc---------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 743 3456789999999999974 4589999999999999865
No 114
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-15 Score=164.10 Aligned_cols=269 Identities=15% Similarity=0.147 Sum_probs=179.4
Q ss_pred ceeeEEEEEe-CC-eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 132 GCFLRTIVCT-EE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 132 ~~~l~~l~~~-~~-~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
+..+..|..+ ++ .|++ +.|.+++++|..+|...++ ..+- .-.|-.+.|-.....+..
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t------------------i~sk--kyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT------------------INSK--KYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE------------------eecc--cccccEEEEecCCceEEE
Confidence 3455567776 33 3444 5777999999999987763 1111 113556666666666777
Q ss_pred EeC--CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 209 GHR--DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 209 GS~--DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+|. |.+||.-++.+. +-++-|.||...|++|+.+|-++ ++|+|.|+|||+||+.+.+|...+
T Consensus 74 sStk~d~tIryLsl~dN--------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------- 138 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDN--------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------- 138 (311)
T ss_pred ccCCCCCceEEEEeecC--------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE-------
Confidence 776 999999999874 34788999999999999999877 789999999999999875543111
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCc--cEEEEEecCCceeeEEeccC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR--ELLKVFNIDGQIENRVDMSL 362 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg--~ll~tl~~~~~~~~~v~~s~ 362 (1115)
.+ ..--..|+++.|-.++.+.. ..|+|+|++.= ..-.+|....
T Consensus 139 ----------~~--------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------- 184 (311)
T KOG1446|consen 139 ----------NL--------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---------- 184 (311)
T ss_pred ----------ec--------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC----------
Confidence 11 01113456776666655544 48999998642 1222221110
Q ss_pred CCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEec-ccc----cccCCC--ce-EEEEEcCCCc-
Q 001245 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAA-KGG----FGDDNR--RT-EALTTSIDGM- 432 (1115)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~-~g~----l~~h~~--~V-~aVa~S~Dg~- 432 (1115)
......+.+.|+++|+.++.....+ +..++. .|+ +.++.. .+ -.-.|+||++
T Consensus 185 ------------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 185 ------------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred ------------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 0011123457888887666555444 344433 333 333322 12 3455899999
Q ss_pred EEEEeCCCeEEEEcC-CCCeeEEeec-CCCcEEEEEecCCEEEeeecccEEEEEeCC
Q 001245 433 IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 433 laSGS~DgtIklWD~-tG~~l~tl~g-H~~~V~sla~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+++|+.||+|.+|++ +|..+..+.+ +..++.|+.+.-++..-++.+..+-.|=.+
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 689999999999999 8999999988 788999998776766666667788888654
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.2e-15 Score=175.54 Aligned_cols=280 Identities=16% Similarity=0.226 Sum_probs=208.7
Q ss_pred eeeEEEEEe--CCeEEEe-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc--CCceEEEEEcCCCCEEE
Q 001245 133 CFLRTIVCT--EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 133 ~~l~~l~~~--~~~l~ag-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G--~~~V~~la~s~dg~~La 207 (1115)
+.+..||.. .++|-+| .|+.|-+||+..+-.... . +|| .+.|-.++|+ +|+.|+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~-----------------v---i~g~~drsIE~L~W~-e~~RLF 84 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP-----------------V---IHGPEDRSIESLAWA-EGGRLF 84 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE-----------------E---EecCCCCceeeEEEc-cCCeEE
Confidence 456677776 5576666 799999999987654432 1 344 6678899998 577899
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
|.+-+|+|.-||+.+. +.......-.++|++||.+|.+. ++-|++||.+...+...+....
T Consensus 85 S~g~sg~i~EwDl~~l--------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~---------- 146 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTL--------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY---------- 146 (691)
T ss_pred eecCCceEEEEecccC--------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE----------
Confidence 9999999999999863 44555666688999999999987 6778899977777765543221
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
++. +. ...+.+.++.+.+++.+|++++ |+.|++||+.++.-++.... ++
T Consensus 147 ----~r~---l~----------rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~--~~----------- 196 (691)
T KOG2048|consen 147 ----KRS---LM----------RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM--QL----------- 196 (691)
T ss_pred ----Eee---cc----------cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee--cc-----------
Confidence 011 11 1126788899999998888876 66799999999887663210 00
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQW 445 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklW 445 (1115)
...++ .+.+. |.+|.+-.|++|++|..-|+|++|
T Consensus 197 ------------d~l~k--------------------~~~~i--------------VWSv~~Lrd~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 197 ------------DRLSK--------------------REPTI--------------VWSVLFLRDSTIASGDSAGTVTFW 230 (691)
T ss_pred ------------ccccc--------------------CCceE--------------EEEEEEeecCcEEEecCCceEEEE
Confidence 00000 01122 345666688899999999999999
Q ss_pred cC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCc-----cccccccccCCEEEEEecCCEEEeecCC
Q 001245 446 DP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-----LLGGWVAHSSPVIKMAVGAGYIFTLANH 517 (1115)
Q Consensus 446 D~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~-----ll~~l~gH~~~V~sva~dg~~laSgS~D 517 (1115)
|. .|.+++.+..|...|.|++ .++.++.+|+.|+.|..+-.++. ......+|...|.+++.-+..++||+.|
T Consensus 231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d 310 (691)
T KOG2048|consen 231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRD 310 (691)
T ss_pred cccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEeccee
Confidence 99 8999999999999999999 45799999999999998887633 3344568888999999877799999999
Q ss_pred CceEEeeecC
Q 001245 518 GGIRGWNVTS 527 (1115)
Q Consensus 518 gtIRlWdl~~ 527 (1115)
.++-+=.+..
T Consensus 311 ~~l~i~~s~~ 320 (691)
T KOG2048|consen 311 FTLAICSSRE 320 (691)
T ss_pred eEEEEccccc
Confidence 9987765543
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=3.4e-16 Score=182.20 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=94.5
Q ss_pred cccCCCceEEEEEcCCCc-EEEEeCCC-----eEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 415 FGDDNRRTEALTTSIDGM-IWTGGANG-----LLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~Dg~-laSGS~Dg-----tIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
+.||...|.+++.+|+|. +||++... .|+||+. +=...+.+.+|+-.|+-|+ |||++|++.|.|.++.||.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 456788999999999998 57777643 5999999 4456678999999999999 7999999999999999998
Q ss_pred CC-C----ccccccccccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 486 LE-G----NLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 486 ~~-G----~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.. + ......+.|+-.|++-. +++.+++|+|.|++|++|....
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 63 1 22445789999999875 5888999999999999998653
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.72 E-value=6.3e-15 Score=166.36 Aligned_cols=350 Identities=19% Similarity=0.240 Sum_probs=220.7
Q ss_pred EeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001245 147 AGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 147 ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
.-+.+.+-+|+++++...++ -| -| +.-. ..-|+||+|.++|. ++||.++|.|-+|+..+.
T Consensus 218 t~Gk~H~~Fw~~~~~~l~k~---------~~-----~f-ek~e-kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~--- 277 (626)
T KOG2106|consen 218 TCGKGHLYFWTLRGGSLVKR---------QG-----IF-EKRE-KKFVLCVTFLENGD-VITGDSGGNILIWSKGTN--- 277 (626)
T ss_pred EeCCceEEEEEccCCceEEE---------ee-----cc-cccc-ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---
Confidence 35778999999987765543 11 11 1011 34699999999876 679999999999999752
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCccee--eccCCCcceeEEEEeeeeee--------e
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA--LSLKPEERHTAALIVERSYI--------D 296 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~--l~~~~~~~~~~a~~~~~~~~--------~ 296 (1115)
+..++-.+|.+.|.+++.-.+|.|+||+.|+.|-+||-.- .+. .++..+-.....++..+..+ .
T Consensus 278 -----~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 278 -----RISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred -----eEEeEeeecCCceEEEEEecCccEeecCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 2233444999999999999999999999999999999322 111 11111112222221111110 0
Q ss_pred eccc--ceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccce
Q 001245 297 LRSH--LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFK 373 (1115)
Q Consensus 297 l~~h--~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~ 373 (1115)
|+|. ....-+.+.......-+|..++...+++++ |+.++||+ ..+++.+-.-. ....+++|.|.+..++.-...
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~-d~~~~~~fhpsg~va~Gt~~G 428 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE-DPAECADFHPSGVVAVGTATG 428 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec-CceeEeeccCcceEEEeeccc
Confidence 1100 001111222335566777777777777765 79999999 44444332211 122356777755332211111
Q ss_pred EE---------EEecCCCCccceeeeeeccccceEEeccCc---EEEEecccccc-----cCCCceEEEEEcCCCc-EEE
Q 001245 374 TK---------IVTSSKKDKAQSSFGFFQRSRNAIMGAADA---VRRVAAKGGFG-----DDNRRTEALTTSIDGM-IWT 435 (1115)
Q Consensus 374 ~~---------~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~---v~~~~~~g~l~-----~h~~~V~aVa~S~Dg~-laS 435 (1115)
.+ ++........-+.+.|++++..+++|+.|. +.++...|... -+...+..+-+|+|++ +.+
T Consensus 429 ~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred eEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 11 122222233336789999999999999986 44555443221 1226788899999998 789
Q ss_pred EeCCCeEEEEcCCCCe----eEE--------------ee-cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC----Ccc
Q 001245 436 GGANGLLLQWDPNGNR----LQD--------------FQ-YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE----GNL 490 (1115)
Q Consensus 436 GS~DgtIklWD~tG~~----l~t--------------l~-gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~----G~l 490 (1115)
-|.|-.|-.|....-+ .+. +- .|...|+.++ ...++||+|..-|+|+|+.-- ...
T Consensus 509 ~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~ 588 (626)
T KOG2106|consen 509 NSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP 588 (626)
T ss_pred ccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence 9999999999553211 111 11 1333444444 568899999999999999842 234
Q ss_pred ccccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 491 LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
-..+.||++.|.+|+| +.+.++|.+.|.+|-.|++
T Consensus 589 ~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 589 SHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 4577899999999997 5677777779999999986
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.3e-16 Score=166.66 Aligned_cols=251 Identities=13% Similarity=0.090 Sum_probs=160.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC--CCc-EEEEeCCCcEEEEeC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp--dG~-L~SgS~DgtIrvWdl 269 (1115)
.|-.+..|--|++|||+|.|++||++.+..+. ..+.+.+|.||++||+.++|.. .|. |+|+|.||.|-||.-
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCC-----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 33345566679999999999999999998521 2256778999999999999986 677 789999999999998
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEee-cCCeEEEEEcCCc-c--
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSA-GFLSFALWDARTR-E-- 343 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~-sd~tI~lWD~~tg-~-- 343 (1115)
+++.-. .. .....|. ..|.+++..+. +-.|+++ +|++|.|.+.++. .
T Consensus 88 ~~g~w~-k~----------------~e~~~h~----------~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~ 140 (299)
T KOG1332|consen 88 ENGRWT-KA----------------YEHAAHS----------ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT 140 (299)
T ss_pred CCCchh-hh----------------hhhhhhc----------ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc
Confidence 775211 00 0011232 33444444433 2334443 4678887775432 1
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
.-+....|..-+++|...|... .|.+.++...
T Consensus 141 t~ki~~aH~~GvnsVswapa~~----------------------------------------------~g~~~~~~~~-- 172 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASA----------------------------------------------PGSLVDQGPA-- 172 (299)
T ss_pred chhhhhccccccceeeecCcCC----------------------------------------------CccccccCcc--
Confidence 0011111111111111111000 0111111100
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEcC-CC--CeeEEeecCCCcEEEEE--ec----CCEEEeeecccEEEEEeCC--Cc--c
Q 001245 424 ALTTSIDGMIWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLC--TF----GSQIWVGYMNGIVQVLDLE--GN--L 490 (1115)
Q Consensus 424 aVa~S~Dg~laSGS~DgtIklWD~-tG--~~l~tl~gH~~~V~sla--~d----G~~LaSGs~DGtIrlWD~~--G~--l 490 (1115)
.+--+++||+.|++||||+. ++ ..-++|.+|.+.|..+| |. -.+|||+|.||+|.||-.+ ++ .
T Consensus 173 ----~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 173 ----AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred ----cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 01124899999999999999 45 45567999999999999 43 3699999999999999854 11 1
Q ss_pred ccccccccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 491 LGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 491 l~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
..-+.--...++.+. +.|..|+-++.|+.|.+|.-..
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 122222456788887 5799999999999999997543
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=2.6e-16 Score=176.77 Aligned_cols=249 Identities=16% Similarity=0.159 Sum_probs=176.3
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCC--CCCCcceEEeecCCCCEEEEEEeCCC--cEEEEeCCCcEE
Q 001245 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIK 265 (1115)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~--~~~~~~~~~l~GH~~~V~sVafSpdG--~L~SgS~DgtIr 265 (1115)
-+.|+.+..=|+ ..+|||++..+.|-|||...-.... .....+-.+|+||++.=++|++++.. .|+|||.|++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 445666665554 6688999999999999986421100 00234456899998877889999864 489999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeec-CCeEEEEEcCCcc
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
+||+...... .+.+ .....+.+|. +.|..+++.+. ...+.+++ |+.+.|||+++++
T Consensus 204 lwdi~~~~~~------~~~~------~p~~~~~~h~----------~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 204 LWDINAESKE------DKVV------DPKTIFSGHE----------DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred EEeccccccC------Cccc------cceEEeecCC----------cceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 9999763221 0000 1112234554 33444444433 33445665 4679999998531
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
.+. . ..-..|...|+
T Consensus 262 -~~~---~-------------------------------------------------------------~~~~ah~~~vn 276 (422)
T KOG0264|consen 262 -SKP---S-------------------------------------------------------------HSVKAHSAEVN 276 (422)
T ss_pred -CCC---c-------------------------------------------------------------ccccccCCcee
Confidence 000 0 00124677888
Q ss_pred EEEEcCCCc--EEEEeCCCeEEEEcC-C-CCeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC--Cc-----
Q 001245 424 ALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE--GN----- 489 (1115)
Q Consensus 424 aVa~S~Dg~--laSGS~DgtIklWD~-t-G~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~--G~----- 489 (1115)
|++|+|=+- |||||.|++|+|||+ + ..++.++.+|...|.+|. | .-..|||++.|+.+.|||+. |+
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 999887543 799999999999999 4 579999999999999998 4 36899999999999999975 32
Q ss_pred --------cccccccccCCEEEEEec---CCEEEeecCCCceEEeeec
Q 001245 490 --------LLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 490 --------ll~~l~gH~~~V~sva~d---g~~laSgS~DgtIRlWdl~ 526 (1115)
++-.--||++.|..+.++ +-.|+|++.|+.+.||...
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 344556999999999864 4579999999999999965
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.2e-16 Score=172.48 Aligned_cols=263 Identities=16% Similarity=0.267 Sum_probs=183.6
Q ss_pred CCC-CEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCC
Q 001245 149 GEN-GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLD 226 (1115)
Q Consensus 149 ~D~-tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS-~DgtIrlWdl~~~~~~ 226 (1115)
.|. ++.+||+.||..... |+.+.. ..+-.+-++ .+.+|+++. .-..|-+|.+....
T Consensus 15 ~d~~~~~~~dl~TGt~~~~-----------------ykg~~~-a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~-- 72 (476)
T KOG0646|consen 15 FDPINCIVWDLRTGTSLLQ-----------------YKGSYL-AQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKD-- 72 (476)
T ss_pred CCCcceeEEecCCCceeEE-----------------ecCccc-ccchhhhhh--chhheeeecccCccccccccCchh--
Confidence 444 699999999986643 111100 011111111 224455554 45578899986411
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCcE-EEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecc
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~ 305 (1115)
.....---.++|.+|+-+|+|.+ +.|..-|.|.+|.+.+|..+.. +.+|-
T Consensus 73 ------~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-------------------~~aHY---- 123 (476)
T KOG0646|consen 73 ------QVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-------------------LSAHY---- 123 (476)
T ss_pred ------hhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH-------------------HHhhc----
Confidence 11111112568999999999984 5555899999999999865421 23443
Q ss_pred eeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCc
Q 001245 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1115)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (1115)
..+.|+.++.++..+++++ |+.|.+|++.+ .+ ++..+.
T Consensus 124 ------Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----lv------------~a~~~~------------------ 162 (476)
T KOG0646|consen 124 ------QSITCLKFSDDGSHIITGSKDGAVLVWLLTD-----LV------------SADNDH------------------ 162 (476)
T ss_pred ------cceeEEEEeCCCcEEEecCCCccEEEEEEEe-----ec------------ccccCC------------------
Confidence 5788999999999999988 78899999631 11 110000
Q ss_pred cceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC---CcEEEEeCCCeEEEEcC-CCCeeEEeecCCC
Q 001245 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID---GMIWTGGANGLLLQWDP-NGNRLQDFQYLPF 460 (1115)
Q Consensus 385 ~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D---g~laSGS~DgtIklWD~-tG~~l~tl~gH~~ 460 (1115)
. .... ..|.+|+..|..+.+.+. ++|+|+|.|.+||+||+ .|.+|-++.- ..
T Consensus 163 ~-----------------~~p~------~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~ 218 (476)
T KOG0646|consen 163 S-----------------VKPL------HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PS 218 (476)
T ss_pred C-----------------ccce------eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CC
Confidence 0 0001 124567778888776655 46999999999999999 7998888764 56
Q ss_pred cEEEEE--ecCCEEEeeecccEEEEEeCC---C--------------ccccccccccC--CEEEEE--ecCCEEEeecCC
Q 001245 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE---G--------------NLLGGWVAHSS--PVIKMA--VGAGYIFTLANH 517 (1115)
Q Consensus 461 ~V~sla--~dG~~LaSGs~DGtIrlWD~~---G--------------~ll~~l~gH~~--~V~sva--~dg~~laSgS~D 517 (1115)
++.|++ |-+++++.|+++|.|.+-++. | ..+..+.||.+ .|+|++ .||..|+||+.|
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 788888 668999999999999988742 2 24667899999 999988 599999999999
Q ss_pred CceEEeeecC
Q 001245 518 GGIRGWNVTS 527 (1115)
Q Consensus 518 gtIRlWdl~~ 527 (1115)
|.|.|||+.+
T Consensus 299 g~VcvWdi~S 308 (476)
T KOG0646|consen 299 GKVCVWDIYS 308 (476)
T ss_pred CCEEEEecch
Confidence 9999999876
No 121
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.5e-16 Score=189.85 Aligned_cols=214 Identities=21% Similarity=0.364 Sum_probs=148.0
Q ss_pred EEee-cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcce-----------------------ee----------ccC
Q 001245 235 LSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK-----------------------AL----------SLK 279 (1115)
Q Consensus 235 ~~l~-GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~-----------------------~l----------~~~ 279 (1115)
+.++ +|.++|++|.||+||+ ||||+.|+.||||.+-..+. .. ...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3456 8999999999999998 89999999999998744110 00 000
Q ss_pred CCcceeEE-E-------EeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecC
Q 001245 280 PEERHTAA-L-------IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (1115)
Q Consensus 280 ~~~~~~~a-~-------~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~ 351 (1115)
........ . ..+..+-.+.||. ++|..+..+..+-+|-+.-|+|||||++.+.+||++|.+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt----------~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H- 408 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHT----------ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH- 408 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccc----------hhheecccccCCeeEeccccccEEeecCCCcceeeEEec-
Confidence 00000000 0 0011111223444 788888888766555555699999999999999999953
Q ss_pred CceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC--
Q 001245 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-- 429 (1115)
Q Consensus 352 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~-- 429 (1115)
... |+||+|.|
T Consensus 409 ndf-------------------------------------------------------------------VTcVaFnPvD 421 (712)
T KOG0283|consen 409 NDF-------------------------------------------------------------------VTCVAFNPVD 421 (712)
T ss_pred CCe-------------------------------------------------------------------eEEEEecccC
Confidence 223 34455444
Q ss_pred CCcEEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCc-cccccc---------cc
Q 001245 430 DGMIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN-LLGGWV---------AH 497 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~-ll~~l~---------gH 497 (1115)
|..++|||-|+.||||++....+-....-..-|++++ |||+..+.|+.+|..+++++.|. +...+. .|
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 3469999999999999995544444433347899999 89999999999999999998753 322221 23
Q ss_pred cCCEEEEEe---cCCEEEeecCCCceEEeeecC
Q 001245 498 SSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 498 ~~~V~sva~---dg~~laSgS~DgtIRlWdl~~ 527 (1115)
. .|+.+.+ +...|+..|.|..|||.|...
T Consensus 502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred c-eeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 3 7999985 345577778999999999853
No 122
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-17 Score=195.14 Aligned_cols=239 Identities=17% Similarity=0.223 Sum_probs=183.2
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCc
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~ 282 (1115)
..+.++..+-.+|+|+.. .+.+|...|.++.+-..++ +++|++|..+-||.....-++.
T Consensus 5 ~~~m~~~~~t~Lr~~~~~--------------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------ 64 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR--------------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT------ 64 (825)
T ss_pred cccceeeeeeccccccch--------------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh------
Confidence 345566667778888754 3567999999999866666 7899999999999875432221
Q ss_pred ceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEecc
Q 001245 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1115)
Q Consensus 283 ~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s 361 (1115)
.+.+|. +.+.++-++....+|+.+. +++||+||+..++.+++|.
T Consensus 65 -------------S~~~he----------spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt------------ 109 (825)
T KOG0267|consen 65 -------------SLTGHE----------SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT------------ 109 (825)
T ss_pred -------------eeeccC----------CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh------------
Confidence 124455 6788888888777777665 6899999998777666553
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCC
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG 440 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~Dg 440 (1115)
+|...+..|.|+|=+. .|+||.|.
T Consensus 110 -------------------------------------------------------gh~~~~~sv~f~P~~~~~a~gStdt 134 (825)
T KOG0267|consen 110 -------------------------------------------------------GHLLNITSVDFHPYGEFFASGSTDT 134 (825)
T ss_pred -------------------------------------------------------ccccCcceeeeccceEEeccccccc
Confidence 3333444555666665 58899999
Q ss_pred eEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEecCC--EEEee
Q 001245 441 LLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTL 514 (1115)
Q Consensus 441 tIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~dg~--~laSg 514 (1115)
.+++||. .-.|..++.+|...|.+++ |+|+++++|++|.+|+|||+. |+++..|.+|.+.|.++.+++. .+++|
T Consensus 135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 9999999 5789999999999988887 899999999999999999986 9999999999999999997654 67899
Q ss_pred cCCCceEEeeecCCCCCchhhHHHhhccccccceecccceEEEEEEeCCCC
Q 001245 515 ANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGR 565 (1115)
Q Consensus 515 S~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~ 565 (1115)
|.|++||+||+.+... ...... ....|.+++||-.++.
T Consensus 215 s~d~tv~f~dletfe~---------I~s~~~----~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEV---------ISSGKP----ETDGVRSLAFNPDGKI 252 (825)
T ss_pred CCCceeeeeccceeEE---------eeccCC----ccCCceeeeecCCcee
Confidence 9999999999975322 112221 1447788888876543
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.6e-16 Score=169.12 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=83.4
Q ss_pred EEEcCCCc-EEEEeCCCeEEEEcCCCCeeEEeecCCCcE--EEEEecCCEEEeeecccEEEEEeC----CCc-----ccc
Q 001245 425 LTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAV--QCLCTFGSQIWVGYMNGIVQVLDL----EGN-----LLG 492 (1115)
Q Consensus 425 Va~S~Dg~-laSGS~DgtIklWD~tG~~l~tl~gH~~~V--~sla~dG~~LaSGs~DGtIrlWD~----~G~-----ll~ 492 (1115)
+-+...+. |+|+|.|.+|-|||+.|+.|+++......- .+|.|+|++||+++.--.|+||.. +|. .+.
T Consensus 193 iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf 272 (420)
T KOG2096|consen 193 IGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF 272 (420)
T ss_pred EeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh
Confidence 44445555 789999999999999999999987643332 244599999999999888999995 242 456
Q ss_pred ccccccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 493 GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 493 ~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
.|+||++.|.+++| +...++|.|.||++|+||..
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 78999999999997 56789999999999999975
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.8e-15 Score=162.98 Aligned_cols=258 Identities=20% Similarity=0.277 Sum_probs=174.0
Q ss_pred EEEEeCCCeEEEEECCCCC--CCCC--CCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 206 VWSGHRDGRIMCWKMNARL--LDSD--DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~--~~~~--~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
|+.|++..-|--+++.... +... ..+.+...+.+|.++|++||.+.- .++|||.|-||+|+|+.+......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~-~~aSGssDetI~IYDm~k~~qlg~---- 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGP-YVASGSSDETIHIYDMRKRKQLGI---- 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecce-eEeccCCCCcEEEEeccchhhhcc----
Confidence 4556666666555554211 0000 112234456899999999999741 389999999999999976433211
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC--EEEeec-CCeEEEEEcCCccEEEEEecCCceeeEE
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRV 358 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~--~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v 358 (1115)
+..|. +.+.++.+.+... .|.|++ |+.|.+|++..-++++++++|...++.+
T Consensus 79 ---------------ll~Ha----------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 79 ---------------LLSHA----------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred ---------------eeccc----------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence 11232 5566676665542 455554 6889999999999999998877666666
Q ss_pred eccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEec---ccccccCCC-ceEEEEEcCCCc-
Q 001245 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA---KGGFGDDNR-RTEALTTSIDGM- 432 (1115)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~---~g~l~~h~~-~V~aVa~S~Dg~- 432 (1115)
+++|. ++.+++-..| .++.|+. ++.++-... .-..|.|+|.|.
T Consensus 134 siHPS-------------------------------~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~ 182 (362)
T KOG0294|consen 134 SIHPS-------------------------------GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDH 182 (362)
T ss_pred EecCC-------------------------------CceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCE
Confidence 55553 3333333333 3444543 122222221 223377889887
Q ss_pred EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEe-cCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe---
Q 001245 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--- 506 (1115)
Q Consensus 433 laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--- 506 (1115)
++.++.+ .|-+|.+ +.....++.. ...+.|+.+ ++..|++|..|+.|++||.+ +.++..+.||...|-++++
T Consensus 183 F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 183 FVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred EEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec
Confidence 6665555 5999998 5555555443 244666664 68999999999999999987 8889999999999999983
Q ss_pred -cCCEEEeecCCCceEEeeec
Q 001245 507 -GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 507 -dg~~laSgS~DgtIRlWdl~ 526 (1115)
++.+|+|+|.||.|++||+.
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CCceEEEEeccCceEEEEEcc
Confidence 56799999999999999985
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.70 E-value=1.6e-16 Score=178.53 Aligned_cols=237 Identities=19% Similarity=0.316 Sum_probs=176.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
..-|+++++|...+.++||++ |.|||||+.... ...+...+-. .--.+.|.++.+.|||+ |+.|+.-.|+-|||+
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLdc-l~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLDC-LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCccccccc-cCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 346888999999999999987 569999997521 1111111111 22356899999999998 999999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe-ecCCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S-~sd~tI~lWD~~tg~ll~tl 348 (1115)
.+....+.. ..+..+ .....|+.+++....++ ++|+.|.|||+++..+++.
T Consensus 495 AapTprika---------------------eltssa------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq- 546 (705)
T KOG0639|consen 495 AAPTPRIKA---------------------ELTSSA------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ- 546 (705)
T ss_pred cCCCcchhh---------------------hcCCcc------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec-
Confidence 874332110 000000 11234556666555554 5789999999876554443
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
|.+|+..+.||.++
T Consensus 547 ------------------------------------------------------------------fqGhtDGascIdis 560 (705)
T KOG0639|consen 547 ------------------------------------------------------------------FQGHTDGASCIDIS 560 (705)
T ss_pred ------------------------------------------------------------------ccCCCCCceeEEec
Confidence 45666677888999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEE
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKM 504 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sv 504 (1115)
+||+ ||||+-|++||.||+ +|+.++...- ...|.+|. |.|.+||+|-.++.|.|.-+.+..-..+.-|.+-|.+|
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSl 639 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSL 639 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEE
Confidence 9998 999999999999999 8887765332 35677776 89999999999999999998876666777899999999
Q ss_pred Ee--cCCEEEeecCCCceEEeeec
Q 001245 505 AV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 505 a~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
.| .|++.+|.+.|+-+-.|...
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred EecccCceeeecCchhhhhhccCc
Confidence 76 79999999999999999853
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=4.3e-15 Score=160.07 Aligned_cols=251 Identities=12% Similarity=0.173 Sum_probs=178.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCC
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t 271 (1115)
..|..|.|+|.++.|+.+|-||++|++|+... ..+..--|..|+.+.+|.++.++++|+.||.||+.|+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccch---------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence 45789999999888888999999999999862 122223589999999999988899999999999999988
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEec
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~ 350 (1115)
+...+ +..|. ..++|+........+++++ |++|++||.+......++..
T Consensus 85 ~~~~~--------------------igth~----------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~ 134 (323)
T KOG1036|consen 85 GNEDQ--------------------IGTHD----------EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ 134 (323)
T ss_pred Cccee--------------------eccCC----------CceEEEEeeccCCeEEEcccCccEEEEecccccccccccc
Confidence 65431 22243 5678888887777888887 68999999987444433321
Q ss_pred CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccccccc--------CCCce
Q 001245 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD--------DNRRT 422 (1115)
Q Consensus 351 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~--------h~~~V 422 (1115)
...+ . +....+..++.|..+.-..|+....+.. -.-.+
T Consensus 135 ~kkV-y---------------------------------~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 135 GKKV-Y---------------------------------CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred CceE-E---------------------------------EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 1111 0 1112234556655555444443222211 11357
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEcCC-C----CeeEEeecCCC---------cEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 423 EALTTSIDGM-IWTGGANGLLLQWDPN-G----NRLQDFQYLPF---------AVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~DgtIklWD~t-G----~~l~tl~gH~~---------~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
++|+.-|++. .+.+|.||.|-+=.++ . ..-..|+.|.. +|++|+ |--+.+|+|+.||.|-+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 7888777655 7888999988776662 3 34556788753 688888 4467899999999999999
Q ss_pred CC-CccccccccccCCEEEEEe--cCCEEEeec
Q 001245 486 LE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLA 515 (1115)
Q Consensus 486 ~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS 515 (1115)
+. -+.+..+..-...|.++++ ||..||.|+
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 86 4566777666677888986 789999875
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=1.5e-15 Score=161.90 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=139.8
Q ss_pred eeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCC--CCCCCCcceE-----EeecCCCCEEEEEEeCC--CcEE
Q 001245 187 SVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLL--DSDDGFGEVL-----SWQAHRGPVLSLCISSY--GDLW 256 (1115)
Q Consensus 187 s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~--~~~~~~~~~~-----~l~GH~~~V~sVafSpd--G~L~ 256 (1115)
+.| .+.|+++.+++. |+++.||+.||.|-+||+....- .+.-..+... .=.+|+-+|.++.+=|- |-+.
T Consensus 40 r~H-gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPH-GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccC-CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 467 689999999985 99999999999999999964220 0000011111 12378889999998774 3367
Q ss_pred EEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEE
Q 001245 257 SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFA 335 (1115)
Q Consensus 257 SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~ 335 (1115)
|+|.|.|+||||..|.+....+..++.- ..|. - ++ ++.+ ..+|+.+.+ -.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~me~~V-------------Ysha------m---Sp---~a~s--HcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFKMEGKV-------------YSHA------M---SP---MAMS--HCLIAAGTRDVQVR 171 (397)
T ss_pred cccccceEEEeecccceeeEEeecCcee-------------ehhh------c---Ch---hhhc--ceEEEEecCCCcEE
Confidence 9999999999999986655444333210 0111 0 11 1111 234444443 4689
Q ss_pred EEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccccc
Q 001245 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF 415 (1115)
Q Consensus 336 lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l 415 (1115)
|=|+.+|.+-++|++|
T Consensus 172 LCDi~SGs~sH~LsGH---------------------------------------------------------------- 187 (397)
T KOG4283|consen 172 LCDIASGSFSHTLSGH---------------------------------------------------------------- 187 (397)
T ss_pred EEeccCCcceeeeccc----------------------------------------------------------------
Confidence 9999888887776544
Q ss_pred ccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcC--CCCeeEEe--------------ecCCCcEEEEE--ecCCEEEee
Q 001245 416 GDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDF--------------QYLPFAVQCLC--TFGSQIWVG 475 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~--tG~~l~tl--------------~gH~~~V~sla--~dG~~LaSG 475 (1115)
...|.+|.++|... |||||.||+||+||+ ..-|...+ ..|.+.|+.+| .||.++++.
T Consensus 188 ---r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 188 ---RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ---cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 34455555666543 789999999999998 33344433 34667888888 689999999
Q ss_pred ecccEEEEEeCC
Q 001245 476 YMNGIVQVLDLE 487 (1115)
Q Consensus 476 s~DGtIrlWD~~ 487 (1115)
+.|..+++|+.+
T Consensus 265 gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 265 GTDDRIRVWNME 276 (397)
T ss_pred cCccceEEeecc
Confidence 999999999964
No 128
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.69 E-value=1.4e-15 Score=171.90 Aligned_cols=289 Identities=16% Similarity=0.173 Sum_probs=184.7
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 190 GVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 190 G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
|+..|.+++++|.|.+++|||.|-+|++||+.+=.. +...|+.+.-... ..|+++.||+.|. |+..|....+||.|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda-s~~~fr~l~P~E~--h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA-SMRSFRQLQPCET--HQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccc-cchhhhccCcccc--cccceeeecCCCCeEEEEecCcceeEEc
Confidence 378899999999999999999999999999975111 2233443332334 4799999999996 55555556899999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEee-cCCeEEEEEcCCc-cEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSA-GFLSFALWDARTR-ELL 345 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~-sd~tI~lWD~~tg-~ll 345 (1115)
-+..+..-....+ ..+ +.....+||. ..+.|-+..|.. ..+.++ .|+++||||+..- +.+
T Consensus 243 RdG~~~~e~~KGD-QYI------~Dm~nTKGHi----------a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 243 RDGFEIVEFSKGD-QYI------RDMYNTKGHI----------AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred cCCceeeeeeccc-hhh------hhhhccCCce----------eeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 8764332111111 000 0011124554 334454554432 233444 4799999998653 445
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEeccccc--------c
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGGF--------G 416 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g~l--------~ 416 (1115)
++|..-..- .+....++-+|.+++..++.|-.|+ |..|...+.+ .
T Consensus 306 qVik~k~~~--------------------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 306 QVIKTKPAG--------------------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred eEEeeccCC--------------------------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee
Confidence 555432110 1111223345666777777776665 5556542211 1
Q ss_pred cCCC--ceEEEEEcCCCc-EEEEeCCCeEEEEcC-C-CCeeEEeecCCC--cE--EEEEecCCEEEeeec------ccEE
Q 001245 417 DDNR--RTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPF--AV--QCLCTFGSQIWVGYM------NGIV 481 (1115)
Q Consensus 417 ~h~~--~V~aVa~S~Dg~-laSGS~DgtIklWD~-t-G~~l~tl~gH~~--~V--~sla~dG~~LaSGs~------DGtI 481 (1115)
.|.. .|.+|+||+||. |+|-+.|+++|+||+ + .++|.+..+-.. +- .|+.|+.++|++|.+ .|++
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L 439 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTL 439 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceE
Confidence 3554 799999999998 899999999999999 3 577777665322 12 234488999999874 5789
Q ss_pred EEEeCC-CccccccccccCCEEEEEecCC--EEEeecCCCceEEee
Q 001245 482 QVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWN 524 (1115)
Q Consensus 482 rlWD~~-G~ll~~l~gH~~~V~sva~dg~--~laSgS~DgtIRlWd 524 (1115)
.++|.. -+.++.+.--+..|..+.++++ .|+.|+.||+++++-
T Consensus 440 ~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 440 FFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999965 3445554444666777777765 588888899999975
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.1e-14 Score=169.88 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=172.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC-CCCEEEEEEeCCCcEEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH-~~~V~sVafSpdG~L~SgS~DgtIrvWdl 269 (1115)
.++|.|||++.+++.||-|=.||.|-+|++..+- -+...+.|| ...|-+|||++.|+|+|.+.+|+|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc-------eeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence 4679999999999999999999999999998632 234567788 56899999999889999999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl 348 (1115)
.+++.... +.. ..+.+..++..+.+..+.-+ .++.+...+...+++..
T Consensus 98 ~~lk~~~~----------------------~d~-------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-- 146 (691)
T KOG2048|consen 98 HTLKQKYN----------------------IDS-------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-- 146 (691)
T ss_pred ccCceeEE----------------------ecC-------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE--
Confidence 88755411 111 11344555555554444332 23322222322222110
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
+..|-...++|-+|.+.
T Consensus 147 ---------------------------------------------------------------~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 147 ---------------------------------------------------------------KRSLMRQKSRVLSLSWN 163 (691)
T ss_pred ---------------------------------------------------------------EeecccccceEEEEEec
Confidence 01122334678899999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeEEee-----c---CCCcEEEEEe-cCCEEEeeecccEEEEEeCC-Ccccccccc
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----Y---LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l~tl~-----g---H~~~V~sla~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g 496 (1115)
+++. |++||.||.|++||+ .|..+...+ . -..-|++|.+ ....||||.+-|+|+.||.. |.+++++..
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh
Confidence 9998 999999999999999 776655211 1 1223788873 56789999999999999987 999999999
Q ss_pred ccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 497 H~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
|.+-|.+|+. ++.++++++.|+.|-.....+
T Consensus 244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred hhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence 9999999986 557999999999988877654
No 130
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.68 E-value=3.7e-15 Score=157.44 Aligned_cols=244 Identities=19% Similarity=0.188 Sum_probs=161.5
Q ss_pred CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 142 ~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
++.|+. +-|.++-||=..+|..+++ ..+| ++.|.|+.+|-+.+.|+|||.|.++|+||+
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGt-------------------y~GH-tGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGT-------------------YDGH-TGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeee-------------------ecCC-CceEEEEEecCCcceeeeccccceeEEEEc
Confidence 445555 7899999999888887764 2367 999999999999999999999999999999
Q ss_pred CCCCCC-----------------------------CC----------------CCCcceEEeecCCCCEEEEEEeCCCc-
Q 001245 221 NARLLD-----------------------------SD----------------DGFGEVLSWQAHRGPVLSLCISSYGD- 254 (1115)
Q Consensus 221 ~~~~~~-----------------------------~~----------------~~~~~~~~l~GH~~~V~sVafSpdG~- 254 (1115)
.+|++. +. ..-++.+.+.-|...++++.++|-++
T Consensus 82 ~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 82 ETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 988741 00 00111233445667888999999888
Q ss_pred EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCe
Q 001245 255 LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLS 333 (1115)
Q Consensus 255 L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~t 333 (1115)
|++|-+||.|.+||+.+++....- .+.|. ..+..+..+++....++++ |.+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s------------------~~~h~----------~~Ind~q~s~d~T~FiT~s~Dtt 213 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDS------------------DEEHS----------SKINDLQFSRDRTYFITGSKDTT 213 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeec------------------hhhhc----------cccccccccCCcceEEecccCcc
Confidence 899999999999999987554210 01233 3566677777777777766 788
Q ss_pred EEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccc-eEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc
Q 001245 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF-KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK 412 (1115)
Q Consensus 334 I~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~ 412 (1115)
-+|||..+-++++++.... ++|+.+++|..+..+-... ..+-+........ .|-.+--.++. =..-
T Consensus 214 akl~D~~tl~v~Kty~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~G----KFEArFyh~i~--------eEEi 280 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAG----KFEARFYHLIF--------EEEI 280 (327)
T ss_pred ceeeeccceeeEEEeeecc-cccceecccccceEEecCCceeeeeeeeccccc----chhhhHHHHHH--------HHHh
Confidence 9999999999999996443 4577777775543211100 0000110000000 00000000000 0001
Q ss_pred cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEc
Q 001245 413 GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWD 446 (1115)
Q Consensus 413 g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD 446 (1115)
|...+|.+.+++|||+|||+ -+||++||.||+--
T Consensus 281 grvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 45667888889999999988 47888898888763
No 131
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.67 E-value=6.7e-16 Score=174.46 Aligned_cols=216 Identities=17% Similarity=0.233 Sum_probs=146.9
Q ss_pred eEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecC
Q 001245 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1115)
Q Consensus 234 ~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~ 312 (1115)
..++++|+..|.++++.|.|- ++|||.|-+||.||+......+. +| +.+..... .
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~---------~f---r~l~P~E~------------h 215 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR---------SF---RQLQPCET------------H 215 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccch---------hh---hccCcccc------------c
Confidence 457899999999999999995 99999999999999976432210 00 11111122 2
Q ss_pred CeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeee
Q 001245 313 DIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1115)
Q Consensus 313 ~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 391 (1115)
.++.+..++.+..+..+ +.-..+|.|-..-+.+...+++..+ .+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI-------------~D---------------------- 260 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI-------------RD---------------------- 260 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh-------------hh----------------------
Confidence 35566666655544433 3345677773322222222221111 00
Q ss_pred eccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcCC--CCeeEEeec-----CCCcE
Q 001245 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQY-----LPFAV 462 (1115)
Q Consensus 392 ~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~t--G~~l~tl~g-----H~~~V 462 (1115)
-..-.||...+++.++.|+.+ ++|+|.||++||||++ -..++.|+. ..-+|
T Consensus 261 --------------------m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 261 --------------------MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred --------------------hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 011246777888899999865 8999999999999993 234444432 22356
Q ss_pred EEEE--ecCCEEEeeecccEEEEEeCCCc----cccccccccC--CEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 463 QCLC--TFGSQIWVGYMNGIVQVLDLEGN----LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 463 ~sla--~dG~~LaSGs~DGtIrlWD~~G~----ll~~l~gH~~--~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
++.+ +||++||.|+.||.|++||..+. ....-.+|.. .|+||+| ||++|+|-|.|+++|+||++.+
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 6655 79999999999999999997432 2344568988 9999986 8999999999999999999764
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.67 E-value=2.2e-15 Score=174.76 Aligned_cols=224 Identities=14% Similarity=0.105 Sum_probs=153.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC---c-EEEEeCCCcEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKI 266 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG---~-L~SgS~DgtIrv 266 (1115)
...+.|++++|+|+.||||..-|++|++++.. .+......+|...|.|+.||..- + |+|||.|+.|.|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 45789999999999999999999999999874 24455679999999999998542 3 689999999999
Q ss_pred EeCCCcceeeccCCCc--ceeEEEEeeeee-----e--------eec-ccceecc------eeeeecCCeEEEEEeCCCC
Q 001245 267 WPWEAIEKALSLKPEE--RHTAALIVERSY-----I--------DLR-SHLSVNG------FSSILTSDIKNLLSDHSRA 324 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~--~~~~a~~~~~~~-----~--------~l~-~h~~~~~------~~~~~s~~v~~las~~~~~ 324 (1115)
+|+...- .+..+.++ ..+.++-..... + -.+ .+..-.+ +.....+.+-.++.++...
T Consensus 531 ~Dv~rny-~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 531 YDVKRNY-DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred Eeccccc-chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence 9986521 12222222 111111000000 0 000 0000000 0011223455666777666
Q ss_pred EEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc
Q 001245 325 KVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1115)
Q Consensus 325 ~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~ 403 (1115)
.++++ .|..|+|+|+.+|+..++|++.-.
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~-------------------------------------------------- 639 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRD-------------------------------------------------- 639 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeeccccc--------------------------------------------------
Confidence 66654 477888888888888887753211
Q ss_pred CcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeeccc
Q 001245 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG 479 (1115)
Q Consensus 404 d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DG 479 (1115)
|.+..-.|...|.|. ||+.+.|+++-++|. +|+|+.++.||+..|+.+. +|-++|+|.+.||
T Consensus 640 --------------~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg 705 (1080)
T KOG1408|consen 640 --------------HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG 705 (1080)
T ss_pred --------------CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCc
Confidence 111111233445554 899999999999999 9999999999999999998 6899999999999
Q ss_pred EEEEEeCC
Q 001245 480 IVQVLDLE 487 (1115)
Q Consensus 480 tIrlWD~~ 487 (1115)
.|.||-+.
T Consensus 706 CIFvW~lp 713 (1080)
T KOG1408|consen 706 CIFVWKLP 713 (1080)
T ss_pred eEEEEECc
Confidence 99999964
No 133
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=7.3e-16 Score=176.57 Aligned_cols=271 Identities=17% Similarity=0.236 Sum_probs=172.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
...+.+++|-+-...|+|++.||+|++|++......+...++++.+|+||.+||.||+++++++ ++||+.||+||.|++
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 5677888888888899999999999999994322223345678899999999999999999998 899999999999977
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
-. ...++..+-..++ .-.+.||. +.++.++.+.....|.+++ |+|+++|+...... .+|
T Consensus 374 p~-----n~dp~ds~dp~vl----~~~l~Ght----------davw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 374 PP-----NQDPDDSYDPSVL----SGTLLGHT----------DAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred CC-----CCCcccccCcchh----ccceeccc----------cceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence 42 1111111100000 01123444 6777888888888888886 79999999866555 455
Q ss_pred ec---CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEE
Q 001245 349 NI---DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1115)
Q Consensus 349 ~~---~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aV 425 (1115)
.. ++.. ..+++........ +.......+. -.++-..+...+.++.. .. -......++-|
T Consensus 434 ~~~~e~g~P-lsvd~~ss~~a~~--------~~s~~~~~~~-~~~~ev~s~~~~~~s~~-------~~-~~~~~~~in~v 495 (577)
T KOG0642|consen 434 GEPKEHGYP-LSVDRTSSRPAHS--------LASFRFGYTS-IDDMEVVSDLLIFESSA-------SP-GPRRYPQINKV 495 (577)
T ss_pred CCccccCCc-ceEeeccchhHhh--------hhhccccccc-chhhhhhhheeeccccC-------CC-cccccCccceE
Confidence 32 2221 2222221110000 0000000000 00000000000111000 00 00011233444
Q ss_pred EEcCC-CcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccC
Q 001245 426 TTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (1115)
Q Consensus 426 a~S~D-g~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~ 499 (1115)
+..|. +..+++..|++|++.|. +|..+.....|...|++++ +.|-+|++|+.||.|++|.+. -.++....+|..
T Consensus 496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred EecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 44444 44789999999999999 9999999999999999999 679999999999999999986 566777777753
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=4.5e-15 Score=166.11 Aligned_cols=229 Identities=16% Similarity=0.154 Sum_probs=157.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEE------------------eecCCCCEEEEEEeCCCc--EEEEeCC
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS------------------WQAHRGPVLSLCISSYGD--LWSGSEG 261 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~------------------l~GH~~~V~sVafSpdG~--L~SgS~D 261 (1115)
.|.++|-|..|..|-+||++-.. ...+..+ -+||+++|.+|++.-+-+ |+|||.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d-----~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVD-----AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEecccccc-----ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 47899999999999999986311 0111111 247999999999987755 7999999
Q ss_pred CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEeec-CCeEEEEEc
Q 001245 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDA 339 (1115)
Q Consensus 262 gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~s-d~tI~lWD~ 339 (1115)
.||++||++++++..+++ .|. .+|.++...+.. ..+.+++ |++++|.|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~-------------------~~~----------k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSIT-------------------HHG----------KKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ceEEEEEcCCCCcceehh-------------------hcC----------CceeEEEecCCCceEEEeccccceEEeeec
Confidence 999999999988764332 122 566666665543 3445555 789999997
Q ss_pred CCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC
Q 001245 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1115)
Q Consensus 340 ~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~ 419 (1115)
+.-... + . -|+ -.
T Consensus 317 R~~~~s------~-~---------------------~wk---------------------------------------~~ 329 (463)
T KOG0270|consen 317 RDPSNS------G-K---------------------EWK---------------------------------------FD 329 (463)
T ss_pred cCcccc------C-c---------------------eEE---------------------------------------ec
Confidence 631000 0 0 010 01
Q ss_pred CceEEEEEcCCCc--EEEEeCCCeEEEEcC--CCCeeEEeecCCCcEEEEEec---CCEEEeeecccEEEEEeCCCcccc
Q 001245 420 RRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLEGNLLG 492 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~--laSGS~DgtIklWD~--tG~~l~tl~gH~~~V~sla~d---G~~LaSGs~DGtIrlWD~~G~ll~ 492 (1115)
+.|+.|++.+-.. ++.+..||+|+=.|+ .|+++.++++|.+.|.+|+.. -.+|++++.|++|+||++.+..-.
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 2344455444433 577889999999999 589999999999999999943 579999999999999998643322
Q ss_pred ccccccC---CEEEEEecC---CEEEeecCCCceEEeeecCCCCC
Q 001245 493 GWVAHSS---PVIKMAVGA---GYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 493 ~l~gH~~---~V~sva~dg---~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
.-..|.- ...|.+++. -.++.|+.-+.+|+||+.+-.|.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3334432 233445443 46778888889999999875443
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.9e-15 Score=167.58 Aligned_cols=291 Identities=14% Similarity=0.118 Sum_probs=182.3
Q ss_pred eeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcE
Q 001245 187 SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGI 264 (1115)
Q Consensus 187 s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtI 264 (1115)
.+| ++.|.|+.+++.|.+|||||.||++|+|.+.||. ++.+++ -.+.|.||+|+|.+. +++.+.+.++
T Consensus 397 rGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 397 RGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred ecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecce--------EEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 467 9999999999999999999999999999999853 455543 245899999999987 5666666666
Q ss_pred EEEeCCCcceeecc--------C-CCcceeEEEEeeeeeeeeccc--ceecceee--eecCCeEEEEEeCCCCEEEeec-
Q 001245 265 KIWPWEAIEKALSL--------K-PEERHTAALIVERSYIDLRSH--LSVNGFSS--ILTSDIKNLLSDHSRAKVWSAG- 330 (1115)
Q Consensus 265 rvWdl~t~~~~l~~--------~-~~~~~~~a~~~~~~~~~l~~h--~~~~~~~~--~~s~~v~~las~~~~~~v~S~s- 330 (1115)
-|-+..-|..+... . .++..-+++. .-.++. ....++|. .....++.+.....|..+++..
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~-----~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVV-----TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccce-----eechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 66665433221100 0 0000000000 000000 00001110 0112333333333344443322
Q ss_pred ---CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEE
Q 001245 331 ---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (1115)
Q Consensus 331 ---d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~ 407 (1115)
.+.|.|.++..+....-|+-.. .....+.|.+..-.++++.+..|+
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~ksk-------------------------------G~vq~v~FHPs~p~lfVaTq~~vR 590 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSK-------------------------------GLVQRVKFHPSKPYLFVATQRSVR 590 (733)
T ss_pred CCCcceEEEEecccccccCchhhcC-------------------------------CceeEEEecCCCceEEEEeccceE
Confidence 1234444443332222221111 112344566655556666666666
Q ss_pred EEecc-c----ccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC--CCCeeEEeecCCCcEEEEEecC--CEEEeeec
Q 001245 408 RVAAK-G----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCTFG--SQIWVGYM 477 (1115)
Q Consensus 408 ~~~~~-g----~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~--tG~~l~tl~gH~~~V~sla~dG--~~LaSGs~ 477 (1115)
..+.. + .+......|..++++|.|- |+.|+.|+.+..+|+ +.+..+++..|...|++|++.+ .+++||+.
T Consensus 591 iYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 591 IYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred EEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC
Confidence 55432 1 2333456788999999876 899999999999998 5789999999999999999665 48999999
Q ss_pred ccEEEEEe------CC-C---ccccccccccCC----EEEEEecCC--EEEeecCCCceEEe
Q 001245 478 NGIVQVLD------LE-G---NLLGGWVAHSSP----VIKMAVGAG--YIFTLANHGGIRGW 523 (1115)
Q Consensus 478 DGtIrlWD------~~-G---~ll~~l~gH~~~----V~sva~dg~--~laSgS~DgtIRlW 523 (1115)
||+|.|+- +- . -.+..|+||.-. |....++++ +|+|+++||+||+|
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999985 21 1 146788999865 777777765 79999999999999
No 136
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.9e-15 Score=153.83 Aligned_cols=240 Identities=13% Similarity=0.158 Sum_probs=156.3
Q ss_pred CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC--CCCEEEEEeCCCeEEEE
Q 001245 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCW 218 (1115)
Q Consensus 142 ~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~--dg~~LaSGS~DgtIrlW 218 (1115)
..+|.. ++|++||+..+.+.....- . ....+| .+||.-+++.. -|.+|||.|+||.|.+|
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~l--------------l--~~L~Gh-~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKL--------------L--AELTGH-SGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCcee--------------e--eEecCC-CCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 334443 7999999999876543211 0 112356 89999999987 79999999999999999
Q ss_pred ECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc---EEEEeCCCcEEEEeCCCc-ceeeccCCCcceeEEEEeeeee
Q 001245 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAI-EKALSLKPEERHTAALIVERSY 294 (1115)
Q Consensus 219 dl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~---L~SgS~DgtIrvWdl~t~-~~~l~~~~~~~~~~a~~~~~~~ 294 (1115)
.-+++. ......+.+|.++|++|+|-|.+. |+.||.||+|.|-+.++- .-.. .
T Consensus 86 ke~~g~------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---~-------------- 142 (299)
T KOG1332|consen 86 KEENGR------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---S-------------- 142 (299)
T ss_pred ecCCCc------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc---h--------------
Confidence 987632 344567789999999999999764 689999999999987652 1100 0
Q ss_pred eeecccc-eecceeeeecC-CeEEEEEe--CCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCcccc
Q 001245 295 IDLRSHL-SVNGFSSILTS-DIKNLLSD--HSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (1115)
Q Consensus 295 ~~l~~h~-~~~~~~~~~s~-~v~~las~--~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~ 369 (1115)
.....|. .++.++-.|.. +...+... ..-.+++|++ |..|+||+..+++-
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w------------------------- 197 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW------------------------- 197 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-------------------------
Confidence 0001121 12222211110 00000000 0124567766 67889998654321
Q ss_pred ccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC-----CcEEEEeCCCeEEE
Q 001245 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-----GMIWTGGANGLLLQ 444 (1115)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D-----g~laSGS~DgtIkl 444 (1115)
-....|.+|...|+.||..|. .+|||+|.||+|.|
T Consensus 198 ----------------------------------------~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 198 ----------------------------------------KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred ----------------------------------------hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 011225566667777776554 25899999999999
Q ss_pred EcCC--C-----CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe--CCCc
Q 001245 445 WDPN--G-----NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD--LEGN 489 (1115)
Q Consensus 445 WD~t--G-----~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD--~~G~ 489 (1115)
|... + +++.+ -...++.+. +.|..|++++.|..|.+|- ++|+
T Consensus 238 wt~~~e~e~wk~tll~~---f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEE---FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred EEecCccCccccccccc---CCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 9763 2 23333 356788887 6899999999999999997 4454
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.64 E-value=1.1e-13 Score=154.09 Aligned_cols=242 Identities=11% Similarity=0.059 Sum_probs=156.6
Q ss_pred CeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE-EeCCCeEEEEE
Q 001245 143 EQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS-GHRDGRIMCWK 219 (1115)
Q Consensus 143 ~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS-GS~DgtIrlWd 219 (1115)
..+++ +.|+.|++||+.++..... + . .+ ..+..++++|+++.|+. ++.|++|++||
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~-----------------~-~-~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGT-----------------L-P-SG--PDPELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEe-----------------c-c-CC--CCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 34544 4678999999988765432 0 1 11 12457889999987755 56789999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC-cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeee
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG-GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg-tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l 297 (1115)
+.++ +.+..+.. ...+.+++|+|+|+ +++++.++ .+.+||.++++..... .
T Consensus 102 ~~~~--------~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~------------------~ 154 (300)
T TIGR03866 102 IETR--------KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV------------------L 154 (300)
T ss_pred CCCC--------eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE------------------E
Confidence 9862 22334432 33468899999998 56666654 5778898765432100 0
Q ss_pred cccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEE
Q 001245 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 298 ~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
.+ .....+++++++..++.++ ++.|++||+.++++++.+..+...
T Consensus 155 ~~------------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--------------------- 201 (300)
T TIGR03866 155 VD------------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG--------------------- 201 (300)
T ss_pred cC------------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc---------------------
Confidence 00 1223566777777775433 678999999998877655211000
Q ss_pred EEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-E-EEEeCCCeEEEEcC-CCCee
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNRL 452 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-l-aSGS~DgtIklWD~-tG~~l 452 (1115)
.. ........+++++|+. + ++.+.+++|.+||+ +++.+
T Consensus 202 ----~~-----------------------------------~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 202 ----VH-----------------------------------PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred ----cc-----------------------------------cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 00 0000122466788887 3 34455778999999 77877
Q ss_pred EEeecCCCcEEEEE--ecCCEEEeee-cccEEEEEeCC-CccccccccccCCEEEEEe
Q 001245 453 QDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (1115)
Q Consensus 453 ~tl~gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~ 506 (1115)
..+. +...+.+++ ++|++|++++ .+|+|++||++ ++++.++..+. ..++|++
T Consensus 243 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~ 298 (300)
T TIGR03866 243 DYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR-LPWGVVV 298 (300)
T ss_pred EEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc-ccceeEe
Confidence 6654 344677777 7999999874 69999999997 77788887553 3476664
No 138
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=2.2e-15 Score=177.33 Aligned_cols=221 Identities=18% Similarity=0.222 Sum_probs=160.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC-c-EEEEeCCCcEEEEeCCCcceeeccC
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLK 279 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG-~-L~SgS~DgtIrvWdl~t~~~~l~~~ 279 (1115)
+.++|||.+..|.|-+||+... . .-+.+..|..|+..|+++.|++.- . |+|||.||+||+||+....-..+
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~----~-rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t-- 171 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS----I-RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST-- 171 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc----c-cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc--
Confidence 4789999999999999999741 0 012345688999999999999864 2 78999999999999965322111
Q ss_pred CCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeecC-CeEEEEEcCCccEEEEEecCCceeeE
Q 001245 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENR 357 (1115)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~sd-~tI~lWD~~tg~ll~tl~~~~~~~~~ 357 (1115)
.++ .+..++.+.+++. +.+.+++.| +.+++||++.-.. .
T Consensus 172 -----------------~~~----------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------~--- 212 (839)
T KOG0269|consen 172 -----------------FRS----------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------C--- 212 (839)
T ss_pred -----------------ccc----------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh---------H---
Confidence 111 1244666777664 445556655 7899999863110 0
Q ss_pred EeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEE
Q 001245 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (1115)
Q Consensus 358 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSG 436 (1115)
.-.|..|.+.|.|+-++|++. ||||
T Consensus 213 ------------------------------------------------------~~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 213 ------------------------------------------------------EKKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred ------------------------------------------------------HHHhhcccCceEEEeecCCCceeeec
Confidence 012567888999999999876 8999
Q ss_pred eCCCeEEEEcCCC-C--eeEEeecCCCcEEEEE--ec-CCEEEeee--cccEEEEEeCCC--ccccccccccCCEEEEEe
Q 001245 437 GANGLLLQWDPNG-N--RLQDFQYLPFAVQCLC--TF-GSQIWVGY--MNGIVQVLDLEG--NLLGGWVAHSSPVIKMAV 506 (1115)
Q Consensus 437 S~DgtIklWD~tG-~--~l~tl~gH~~~V~sla--~d-G~~LaSGs--~DGtIrlWD~~G--~ll~~l~gH~~~V~sva~ 506 (1115)
+.|++|||||.++ + .+.++.. ..+|.+|+ |. -.+||+++ .|-.|.|||+.- -...++..|+..|+.+++
T Consensus 239 GRDK~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred CCCccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceec
Confidence 9999999999964 3 3334332 35788888 55 35777776 588999999874 356899999999999997
Q ss_pred cC---CEEEeecCCCceEEe
Q 001245 507 GA---GYIFTLANHGGIRGW 523 (1115)
Q Consensus 507 dg---~~laSgS~DgtIRlW 523 (1115)
++ ..+.|+|.|++|-.=
T Consensus 318 ~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 318 DSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred cCCCceeeEeecCccHHHHh
Confidence 43 578899999987543
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=159.92 Aligned_cols=113 Identities=18% Similarity=0.293 Sum_probs=98.2
Q ss_pred ccccCCCceEEEEEcCC--CcEEEEeCCCeEEEEcC-CC---CeeEEeecCCCcEEEEEecC--CEEEeeecccEEEEEe
Q 001245 414 GFGDDNRRTEALTTSID--GMIWTGGANGLLLQWDP-NG---NRLQDFQYLPFAVQCLCTFG--SQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 414 ~l~~h~~~V~aVa~S~D--g~laSGS~DgtIklWD~-tG---~~l~tl~gH~~~V~sla~dG--~~LaSGs~DGtIrlWD 485 (1115)
.|.+|+..|+.+++||. +.++|+|.||+|+|||+ .| .|+.+ ++|...|+.|...+ .+||||+.||+++|||
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWD 330 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEE
Confidence 36779999999999886 45899999999999999 66 46655 89999999998543 4899999999999999
Q ss_pred CC----CccccccccccCCEEEEEec---CCEEEeecCCCceEEeeecC
Q 001245 486 LE----GNLLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 486 ~~----G~ll~~l~gH~~~V~sva~d---g~~laSgS~DgtIRlWdl~~ 527 (1115)
+. |+.+++|+-|..+|++|.+. .+.++.+|.|..|.+||+..
T Consensus 331 LR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 331 LRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred hhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 74 78899999999999999964 67888899999999999975
No 140
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.62 E-value=7.2e-14 Score=157.29 Aligned_cols=235 Identities=16% Similarity=0.200 Sum_probs=163.2
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCC-ceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP-FKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLL 225 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~-~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~ 225 (1115)
+..+.|.|||.++-..... ..| +..| ++-.+| ...=..|++++. ...|+||+.|++|++||+.....
T Consensus 144 t~~~dv~Vfd~tk~~s~~~--------~~~--~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPK--------ASG--ECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCCEEEEEeccCCCccc--------ccc--cCCCceEEEee-cccccccccccccceeEeeccCCCcEEEEecccccc
Confidence 4677999999875443321 111 1112 122244 333445777764 67899999999999999975322
Q ss_pred CCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeeccccee
Q 001245 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1115)
Q Consensus 226 ~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~ 303 (1115)
. .........+.+|...|..|+|.+-.+ ++|+++|+.+.|||+.+. .. . . .....+|.
T Consensus 213 ~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~-~----~-----------~~~~~ah~-- 272 (422)
T KOG0264|consen 213 E-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS-K----P-----------SHSVKAHS-- 272 (422)
T ss_pred C-CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC-C----C-----------cccccccC--
Confidence 1 112334556899999999999998654 579999999999999863 11 0 0 01123454
Q ss_pred cceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCc-cEEEEEecCCceeeEEeccCCCCccccccceEEEEecC
Q 001245 304 NGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (1115)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg-~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~ 380 (1115)
+++.|+++.+-+. .|++++ |++|+|||+|+- +++++
T Consensus 273 --------~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~--------------------------------- 311 (422)
T KOG0264|consen 273 --------AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT--------------------------------- 311 (422)
T ss_pred --------CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee---------------------------------
Confidence 7899999988655 456666 899999998752 12222
Q ss_pred CCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcCC--C-------
Q 001245 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--G------- 449 (1115)
Q Consensus 381 ~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~t--G------- 449 (1115)
+.+|...|..|.+||... |||++.|+.+.+||++ |
T Consensus 312 ----------------------------------~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 312 ----------------------------------FEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred ----------------------------------ccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 445666677778887753 7999999999999983 4
Q ss_pred ------CeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCCC
Q 001245 450 ------NRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 450 ------~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~G 488 (1115)
+++-+--||...|..+. | ..-.|+|.+.|+.++||....
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23566678999999888 3 357899999999999999753
No 141
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=1.3e-14 Score=158.77 Aligned_cols=252 Identities=12% Similarity=0.137 Sum_probs=171.9
Q ss_pred EEeecCCCCEEEEEEeCCC--cEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecC
Q 001245 235 LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1115)
Q Consensus 235 ~~l~GH~~~V~sVafSpdG--~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~ 312 (1115)
..|.||++.|.++|=.|.. .++|||.||.||+||++...+..++ .+|. +
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-------------------~AH~----------G 110 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-------------------KAHE----------G 110 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-------------------eccc----------C
Confidence 3578999999999999975 2789999999999999886655322 3344 4
Q ss_pred CeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeee
Q 001245 313 DIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1115)
Q Consensus 313 ~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 391 (1115)
-|+-++.+. ..++++ .|++|+.|-+.- ..++++-+++.+. .++..-..
T Consensus 111 ~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~-gIdh~~~~--------------------------- 159 (433)
T KOG0268|consen 111 LVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYL-GIDHHRKN--------------------------- 159 (433)
T ss_pred ceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecccccc-cccccccc---------------------------
Confidence 556666654 344454 478999999753 4666664444331 00000000
Q ss_pred eccccceEEeccCcEEEEecc-----cccccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEE
Q 001245 392 FQRSRNAIMGAADAVRRVAAK-----GGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ 463 (1115)
Q Consensus 392 ~~~~~~~~~Gs~d~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~ 463 (1115)
..+......|-+|+.. ..+.=-...+.++.|+|-.+ |+++..|+.|.|+|+ .+.+++...-. ..-+
T Consensus 160 -----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN 233 (433)
T KOG0268|consen 160 -----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTN 233 (433)
T ss_pred -----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-cccc
Confidence 0000011123344431 12222345678888888865 678889999999999 88877664321 2234
Q ss_pred EEE--ecCCEEEeeecccEEEEEeCC--CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCCCCchhhHH
Q 001245 464 CLC--TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPLDSILCK 537 (1115)
Q Consensus 464 sla--~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~pld~~i~~ 537 (1115)
.|+ |.+--+.+|++|..+..+|.. ...+...++|.+.|.+|.+ -|+-++|||.|.+|||+.+...-.+|-.-..
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 555 767788899999999999986 5788999999999999986 5889999999999999998765444433333
Q ss_pred HhhccccccceecccceEEEEEEeCCC
Q 001245 538 ELAGKEFLYTRMENLKILAGTWNVGQG 564 (1115)
Q Consensus 538 ~l~~re~~yt~~~~irI~v~TWNv~~~ 564 (1115)
.|+ +|++.-|-+..+
T Consensus 314 RMq------------~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 314 RMQ------------HVFCVKYSMDSK 328 (433)
T ss_pred hhh------------eeeEEEEecccc
Confidence 333 899999988643
No 142
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.60 E-value=1.4e-13 Score=163.42 Aligned_cols=328 Identities=12% Similarity=0.096 Sum_probs=211.0
Q ss_pred CCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
+.-+.|+ ..|.+-+||++.-..... ....| .++|....|-+.--+|+|++.|...|+|=
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v------------------~~nah-~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINV------------------TRNAH-YGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeee------------------eeccc-cCCcccceecCCCceEeeccCCCceeEEE
Confidence 4455553 446799999987654432 22245 56777788888888999999999999998
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEe-CCCc-EEEEeCCCcEEEEeCCCcc----eee-----------ccCC--
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCIS-SYGD-LWSGSEGGGIKIWPWEAIE----KAL-----------SLKP-- 280 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafS-pdG~-L~SgS~DgtIrvWdl~t~~----~~l-----------~~~~-- 280 (1115)
.+++.+ . .+..+.-.||..|-.+|.|- ..|. +.|++.|+|.|..++-.-. ... ....
T Consensus 317 fD~~dg---~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 317 FDSGDG---V-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eeCCCC---c-chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 875432 1 12233346999999999997 5676 7899999999988754310 000 0000
Q ss_pred -CcceeEEEEeeee--------eeeec----------ccceecceeeeec------CCeEEEEEeCCCCEEEeec-CCeE
Q 001245 281 -EERHTAALIVERS--------YIDLR----------SHLSVNGFSSILT------SDIKNLLSDHSRAKVWSAG-FLSF 334 (1115)
Q Consensus 281 -~~~~~~a~~~~~~--------~~~l~----------~h~~~~~~~~~~s------~~v~~las~~~~~~v~S~s-d~tI 334 (1115)
.-..+.++..+-. ..... ...+.+.+...+. ..+++++.++.|..++.+. .++|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 0011222211100 00000 0001111222233 4577778888777776654 5789
Q ss_pred EEEEcCCccEEEEEe---cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEE-Ee
Q 001245 335 ALWDARTRELLKVFN---IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR-VA 410 (1115)
Q Consensus 335 ~lWD~~tg~ll~tl~---~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~-~~ 410 (1115)
-++++.+|-..+.|. .|...+. .++.-...+.++++..+|+.. |+
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~-------------------------------gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVT-------------------------------GLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred EEEEcccCeeecccccCccccCcee-------------------------------EEEecCCCceEEEccCcceEEEEe
Confidence 999999998888873 2222222 222222334455555555544 43
Q ss_pred cc-ccccc---CCCceEEEEEcCC-CcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEE
Q 001245 411 AK-GGFGD---DNRRTEALTTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQ 482 (1115)
Q Consensus 411 ~~-g~l~~---h~~~V~aVa~S~D-g~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIr 482 (1115)
.+ ..+.. -...+.++...-. +.++.+..|-.|++.|. +-+.++.|.||++.|++++ +||++|++++.|++||
T Consensus 522 f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 522 FKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred cCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 32 22211 1123444444433 34788999999999999 8889999999999999998 7999999999999999
Q ss_pred EEeCC-CccccccccccCCEEEEE--ecCCEEEeecCC-CceEEee
Q 001245 483 VLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANH-GGIRGWN 524 (1115)
Q Consensus 483 lWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS~D-gtIRlWd 524 (1115)
+||+- |.++..+.- ..+.++|. +.|.+|||+..| ..|.+|.
T Consensus 602 ~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99985 888776643 34555655 689999999888 8999996
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.60 E-value=2e-14 Score=166.31 Aligned_cols=243 Identities=17% Similarity=0.179 Sum_probs=151.5
Q ss_pred eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 001245 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 144 ~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~ 221 (1115)
+|+. ++|.|+|+||+++..+.+. . ..-+| .+.|.+++|.+. -..++||++||.|.|||+.
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~---------------~--~~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGG---------------R--LNLGH-TGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred eEEEccCCceeeeeeeccceeecc---------------e--eeccc-ccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 4443 7899999999999887652 0 11246 788999999885 5578999999999999985
Q ss_pred CCCCC--------------CC-----CCCcceEEeecCCCCEEE----EEEeCCCcEEEEeC-CCcEEEEeCCCcceeec
Q 001245 222 ARLLD--------------SD-----DGFGEVLSWQAHRGPVLS----LCISSYGDLWSGSE-GGGIKIWPWEAIEKALS 277 (1115)
Q Consensus 222 ~~~~~--------------~~-----~~~~~~~~l~GH~~~V~s----VafSpdG~L~SgS~-DgtIrvWdl~t~~~~l~ 277 (1115)
-...+ +. ...+.+..+++|.+.|.+ +.|-.+..|+|+|. |++|||||+.+..+...
T Consensus 176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence 32210 10 111224467788665555 55555555898877 99999999987554422
Q ss_pred cCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeecCCeEEEEEcCCccEEEEEecCCceee
Q 001245 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGFLSFALWDARTRELLKVFNIDGQIEN 356 (1115)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~ 356 (1115)
..+-..+. +..|. .-+-.+.+|..+.. ..+++++.|++|..||+.+-..
T Consensus 256 ~ep~~~~~-----------~~t~s-------krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~------------ 305 (720)
T KOG0321|consen 256 QEPRGSDK-----------YPTHS-------KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI------------ 305 (720)
T ss_pred cCCCcccC-----------ccCcc-------cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc------------
Confidence 21111000 00010 00112345555544 4556789999999999754210
Q ss_pred EEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE--EEEEcCCCc-E
Q 001245 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE--ALTTSIDGM-I 433 (1115)
Q Consensus 357 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~--aVa~S~Dg~-l 433 (1115)
+|... +.++...-. .-..+||++ +
T Consensus 306 ----sP~~~-------------------------------------------------~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 306 ----SPVAE-------------------------------------------------FSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ----Cchhh-------------------------------------------------ccCcccceeeeeeecCCCCceE
Confidence 01000 000000000 112578887 8
Q ss_pred EEEeCCCeEEEEcC-CC-CeeEEeecCCCcEEEEEe---cCCEEEeeecccEEEEEeCC
Q 001245 434 WTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 434 aSGS~DgtIklWD~-tG-~~l~tl~gH~~~V~sla~---dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+||+.|....+|.+ +- .....+.||...|++|++ .-.-+|+++.|-+++||++.
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 99999999999998 33 456678899999999982 22345555999999999974
No 144
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.1e-13 Score=144.63 Aligned_cols=245 Identities=15% Similarity=0.207 Sum_probs=172.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC--CCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~--~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~ 270 (1115)
.|.+-+++|-+++|+.|+.+|+|-+..+..-.-.+ ......+...++|.++|..|+|..+ -|+||+. |.||-|.+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-~Lls~gd-G~V~gw~W~ 89 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-FLLSGGD-GLVYGWEWN 89 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-heeeccC-ceEEEeeeh
Confidence 45667789999999999999999999975211000 1112234456999999999999943 4788874 999999997
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeecCCeEEEEEcCCccEEEEEe
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAGFLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~sd~tI~lWD~~tg~ll~tl~ 349 (1115)
..++++... .++.+ . ..-|. ...+-.++..+..+|. +..+..++|+.+.-||+++|+.-++|.
T Consensus 90 E~~es~~~K----~lwe~----~---~P~~~-----~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 90 EEEESLATK----RLWEV----K---IPMQV-----DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred hhhhhccch----hhhhh----c---Ccccc-----CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 644321111 01000 0 00011 0123357778888754 455666778999999999999988887
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE-c
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT-S 428 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~-S 428 (1115)
+|...+ .+|+. +
T Consensus 154 GHtDYv-------------------------------------------------------------------H~vv~R~ 166 (325)
T KOG0649|consen 154 GHTDYV-------------------------------------------------------------------HSVVGRN 166 (325)
T ss_pred CCccee-------------------------------------------------------------------eeeeecc
Confidence 766552 23332 4
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeEEeec---------C-CCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccc--cc
Q 001245 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQY---------L-PFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLG--GW 494 (1115)
Q Consensus 429 ~Dg~laSGS~DgtIklWD~-tG~~l~tl~g---------H-~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~--~l 494 (1115)
..++++||++||++|+||. ++++++++.. | ..+|-+++.+..+|++|+.- ...||.+. .++.. .+
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp-~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSSESTCVFPI 245 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC-ceeEEeccCCCceEEEec
Confidence 5568999999999999999 8999988753 2 23688999999999998755 58999986 44443 44
Q ss_pred ccccCCEEEEEecCCEEEeecCCCceEEeeec
Q 001245 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 495 ~gH~~~V~sva~dg~~laSgS~DgtIRlWdl~ 526 (1115)
.+| |..+.|+...+++++..+.|.-|.+.
T Consensus 246 pa~---v~~v~F~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 246 PAR---VHLVDFVDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccc---eeEeeeecceEEEeccccceeeeeec
Confidence 444 66677888899999999999999864
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.7e-13 Score=161.63 Aligned_cols=235 Identities=19% Similarity=0.182 Sum_probs=172.7
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvW 267 (1115)
.| +.+-+.|.++++|..|.|.+.||.||+|+..... ++-.+..-|...|.+++...+ .|++||.++||.++
T Consensus 11 ah-t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-------e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y 81 (933)
T KOG1274|consen 11 AH-TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-------EEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRY 81 (933)
T ss_pred hc-cCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-------cCCchhhccCceeEEEeeccc-ceEEeeccceEEEe
Confidence 35 6667889999999999999999999999865410 111122228888999988764 69999999999999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCC-eEEEEEcCCccEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL-SFALWDARTRELLK 346 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~-tI~lWD~~tg~ll~ 346 (1115)
....++.- .-++ .+.-++++++++.+|..++.+++. .|+|-++.+....+
T Consensus 82 ~fps~~~~-------~iL~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 82 KFPSGEED-------TILA----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK 132 (933)
T ss_pred eCCCCCcc-------ceee----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe
Confidence 98764321 0011 122467889999999988888764 58877765433322
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
+ +.+|...|.+|.
T Consensus 133 ~-------------------------------------------------------------------lrgh~apVl~l~ 145 (933)
T KOG1274|consen 133 V-------------------------------------------------------------------LRGHDAPVLQLS 145 (933)
T ss_pred e-------------------------------------------------------------------ecccCCceeeee
Confidence 2 345666788888
Q ss_pred EcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC--------CCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccc
Q 001245 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--------PFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1115)
Q Consensus 427 ~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH--------~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~ 493 (1115)
+.|.+. ||+.+.||+|++||+ +|.+..++.+- ...+.-++ |+|..+|..+.|++|++++.. +.....
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 888887 689999999999999 88888777651 11223334 789999999999999999987 455444
Q ss_pred ccc--ccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 494 WVA--HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 494 l~g--H~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
|.. |+..+..++ +.|+|||+++.||.|-|||+.+
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 442 334466665 5899999999999999999976
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=2.9e-13 Score=151.72 Aligned_cols=283 Identities=16% Similarity=0.244 Sum_probs=177.6
Q ss_pred CCCcchhcccCCCccccccccccccCCCCCCcccccCCCccccccceeeEEEEEeCCeEEEeCCCCEEEEeCCCCccccc
Q 001245 87 SSSLPEYIGKGGDIPMFKPPVRAALHPARPPSLEVKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYDESE 166 (1115)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~p~~~~~~~~~l~~~~~~~~l~~l~~~~~~l~ag~D~tvrvWdl~tg~~~~~ 166 (1115)
-.-|+.|+-.-+..-+|.- .+.+.|.-|-|+|-.-+|+.....|-++ -+..-|..|-|||+.--..+..
T Consensus 149 vs~LEvYVyn~~e~nlYvH--HD~ilpafPLC~ewld~~~~~~~~gNyv---------AiGtmdp~IeIWDLDI~d~v~P 217 (463)
T KOG0270|consen 149 VSYLEVYVYNEEEENLYVH--HDFILPAFPLCIEWLDHGSKSGGAGNYV---------AIGTMDPEIEIWDLDIVDAVLP 217 (463)
T ss_pred ceEEEEEEEcCCCcceeEe--cceeccCcchhhhhhhcCCCCCCCcceE---------EEeccCceeEEecccccccccc
Confidence 3568888887777666543 2455688887877655665554444333 0113688999999875443321
Q ss_pred cccccccc--CCC--CCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC
Q 001245 167 SDSVSVSK--SKG--EDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR 241 (1115)
Q Consensus 167 ~~~~~~~~--~~~--d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~ 241 (1115)
.+.++. ++- -.....+..++| +..|++|++.-. -.+|||||.|.||++||+++++ +..++..|.
T Consensus 218 --~~~LGs~~sk~~~k~~k~~~~~~gH-Tdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------p~~s~~~~~ 286 (463)
T KOG0270|consen 218 --CVTLGSKASKKKKKKGKRSNSASGH-TDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------PKSSITHHG 286 (463)
T ss_pred --ceeechhhhhhhhhhcccccccccc-hHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--------cceehhhcC
Confidence 112221 100 000011122356 888888888764 6799999999999999999864 456778899
Q ss_pred CCEEEEEEeCCC-c-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE
Q 001245 242 GPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (1115)
Q Consensus 242 ~~V~sVafSpdG-~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las 319 (1115)
+.|.++.|.|.. + |+|||.|++|++-|.....++ ...+ ...++|-.++.
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s-------~~~w----------------------k~~g~VEkv~w 337 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS-------GKEW----------------------KFDGEVEKVAW 337 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCcccc-------CceE----------------------EeccceEEEEe
Confidence 999999999975 4 799999999999998641111 0000 12245555555
Q ss_pred eCCCCEEE--eecCCeEEEEEcCCc-cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecccc
Q 001245 320 DHSRAKVW--SAGFLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR 396 (1115)
Q Consensus 320 ~~~~~~v~--S~sd~tI~lWD~~tg-~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~ 396 (1115)
.+.....+ +..|++++-.|+|.- +++.+++.|.
T Consensus 338 ~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd-------------------------------------------- 373 (463)
T KOG0270|consen 338 DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD-------------------------------------------- 373 (463)
T ss_pred cCCCceeEEEecCCceEEeeecCCCCCceeEEEecc--------------------------------------------
Confidence 55443333 233688898998763 5555554333
Q ss_pred ceEEeccCcEEEEecccccccCCCceEEEEEcC--CCcEEEEeCCCeEEEEcCCCCeeEEeecCCC---cEEEEE--ec-
Q 001245 397 NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGGANGLLLQWDPNGNRLQDFQYLPF---AVQCLC--TF- 468 (1115)
Q Consensus 397 ~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~--Dg~laSGS~DgtIklWD~tG~~l~tl~gH~~---~V~sla--~d- 468 (1115)
..|.+|.++. -|.++|+|+|++|++|++.+..-+....|.- ...|.+ ++
T Consensus 374 -----------------------~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 374 -----------------------DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred -----------------------CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence 2333334332 2468999999999999984432222222222 244555 32
Q ss_pred CCEEEeeecccEEEEEeCC
Q 001245 469 GSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 469 G~~LaSGs~DGtIrlWD~~ 487 (1115)
.-.||.|+..+.++|||+.
T Consensus 431 a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ceEEEecCccceEEEeecc
Confidence 5688889888899999974
No 147
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.54 E-value=1e-12 Score=146.79 Aligned_cols=253 Identities=12% Similarity=0.101 Sum_probs=190.1
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
|.|+++-+.|...++.+.. ..+| .-.|+.+.+.++...++++|.|..||+|......
T Consensus 238 G~d~~av~~d~~s~q~l~~-------------------~~Gh-~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--- 294 (506)
T KOG0289|consen 238 GEDKTAVLFDKPSNQILAT-------------------LKGH-TKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--- 294 (506)
T ss_pred CCCCceEEEecchhhhhhh-------------------ccCc-ceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence 6788999999887776653 2256 7889999999999999999999999999987522
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecce
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~ 306 (1115)
+....+.|.++|+.+...|.|+ |+|+|.||+...-|++++.+....+.+ .
T Consensus 295 -----~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-------------------~----- 345 (506)
T KOG0289|consen 295 -----EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-------------------T----- 345 (506)
T ss_pred -----CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-------------------c-----
Confidence 3445688999999999999998 899999999999999887654211100 0
Q ss_pred eeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCcc
Q 001245 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA 385 (1115)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~ 385 (1115)
..-.+.+.++.++|-.+.++. |+.++|||+.++..+..|.+|...+
T Consensus 346 ---s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v------------------------------ 392 (506)
T KOG0289|consen 346 ---SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV------------------------------ 392 (506)
T ss_pred ---ccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce------------------------------
Confidence 012355667777776666654 6789999999988777776665543
Q ss_pred ceeeeeeccccceEEeccCc-EEEEecc-----ccc-ccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-C--CCeeEE
Q 001245 386 QSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGF-GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N--GNRLQD 454 (1115)
Q Consensus 386 ~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l-~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-t--G~~l~t 454 (1115)
.++.|+.+|-.++++++|+ |++|+.. .++ ......|.++.|.+.|+ ++.++.|=.|.+.+- + =+++..
T Consensus 393 -k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 393 -KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred -eEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 3456677777777777777 8888763 111 12334688999999998 678877777777775 2 257888
Q ss_pred eecCCCcEEEEEe--cCCEEEeeecccEEEEEeC
Q 001245 455 FQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 455 l~gH~~~V~sla~--dG~~LaSGs~DGtIrlWD~ 486 (1115)
+.-|++..+++.+ ..++++++|.|...++.-+
T Consensus 472 ~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 472 LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhhcccccceeeecccceEEeeccchhheEEeec
Confidence 8889888888884 4789999999999887643
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=5.5e-14 Score=165.78 Aligned_cols=220 Identities=15% Similarity=0.214 Sum_probs=156.9
Q ss_pred CeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 001245 143 EQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 143 ~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWd 219 (1115)
++|+| +..|.|-+||+... .+. .-...|.+ | ...|.++.|.+- ..+|+|||+||+||+||
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~--~rn------------k~l~~f~E--H-~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKS--IRN------------KLLTVFNE--H-ERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhheeecCCCcEEEEecCcc--ccc------------hhhhHhhh--h-ccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 34555 67889999998742 111 00112444 6 778999999864 78999999999999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC--cEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeee
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG--~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l 297 (1115)
+... +-..++.+...+|+.|+|+|.- .++|+.+.|.+++||+.-.... ...+
T Consensus 163 lR~~--------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------~~k~ 216 (839)
T KOG0269|consen 163 LRSK--------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------EKKL 216 (839)
T ss_pred eecc--------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------HHHh
Confidence 9752 2356788899999999999853 3789999999999999753221 1234
Q ss_pred cccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE--EEEEecCCceeeEEeccCCCCccccccceE
Q 001245 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1115)
Q Consensus 298 ~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l--l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~ 374 (1115)
.+|. +.|.|+-..|++..|+++| |+.|+|||..+++. +.+..
T Consensus 217 ~AH~----------GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn------------------------- 261 (839)
T KOG0269|consen 217 TAHN----------GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN------------------------- 261 (839)
T ss_pred hccc----------CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-------------------------
Confidence 4565 7888999999999999988 79999999876442 11110
Q ss_pred EEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc--EEEEeC--CCeEEEEcCCC-
Q 001245 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGA--NGLLLQWDPNG- 449 (1115)
Q Consensus 375 ~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~--laSGS~--DgtIklWD~tG- 449 (1115)
....|..|.+-|+-. ||+.+. |-.|++||+.-
T Consensus 262 -------------------------------------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 262 -------------------------------------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred -------------------------------------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 011233344444432 555443 78899999964
Q ss_pred -CeeEEeecCCCcEEEEEec---CCEEEeeecccEEEE
Q 001245 450 -NRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQV 483 (1115)
Q Consensus 450 -~~l~tl~gH~~~V~sla~d---G~~LaSGs~DGtIrl 483 (1115)
-+-.++..|+..|+.++.+ -..|++++.||+|..
T Consensus 299 YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 299 YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 4568999999999999943 468888888887753
No 149
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=2.4e-14 Score=169.01 Aligned_cols=272 Identities=18% Similarity=0.191 Sum_probs=180.9
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| .++|.|++||..|.+|+|||.|..+|+|+++++.| ...++||.+-|+.+|.+.+.. ++++|.|+.||+
T Consensus 188 gH-~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~--------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 188 GH-RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC--------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred hh-hhheeeeeeccccceEeecCccceeeeeeccchhh--------hccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 55 78999999999999999999999999999998543 567899999999999999876 689999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLK 346 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~ 346 (1115)
|-+..+... ..|++|+ +.|..++++|-. .+..|+|+++||.+ -+. .
T Consensus 259 Wrl~~~~pv-------------------svLrght----------gavtaiafsP~~---sss~dgt~~~wd~r-~~~-~ 304 (1113)
T KOG0644|consen 259 WRLPDGAPV-------------------SVLRGHT----------GAVTAIAFSPRA---SSSDDGTCRIWDAR-LEP-R 304 (1113)
T ss_pred EecCCCchH-------------------HHHhccc----------cceeeeccCccc---cCCCCCceEecccc-ccc-c
Confidence 999876543 2256777 677888887743 34457999999987 111 1
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
. +.|.+....+.+ ...++-|-..+....+|+.++....+.--.+..+...+.-+.
T Consensus 305 ~------------y~prp~~~~~~~-------------~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t 359 (1113)
T KOG0644|consen 305 I------------YVPRPLKFTEKD-------------LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVT 359 (1113)
T ss_pred c------------cCCCCCCccccc-------------ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEe
Confidence 1 111111100000 000011111112223343332211111111222333333333
Q ss_pred EcCCC--cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC-Ccccc-cccccc
Q 001245 427 TSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-GNLLG-GWVAHS 498 (1115)
Q Consensus 427 ~S~Dg--~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~-G~ll~-~l~gH~ 498 (1115)
.+.|- ..+++-.+-.+.+|++ +|.+++.+.+|...+..+. | +-+...+++.||.+.|||+. |..++ -+.||.
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~ 439 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG 439 (1113)
T ss_pred ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence 33332 3566777888999999 9999999999999988887 3 55666799999999999975 75543 346787
Q ss_pred CCEEEE-EecCCEEEeecCCCceEEeeecC
Q 001245 499 SPVIKM-AVGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 499 ~~V~sv-a~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
..|.+- ..||+.++-....|.+.|-....
T Consensus 440 kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 440 KLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eeeccccCCCCceEecCCCCCceEEeccCC
Confidence 766653 35787777666677777776543
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=2.2e-11 Score=137.82 Aligned_cols=273 Identities=22% Similarity=0.368 Sum_probs=182.6
Q ss_pred eeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCc-ccccccccccccCCCCCCCCCceeeeccCCceEEEEE-cCCCC-EE
Q 001245 133 CFLRTIVCT-EEQLWA--GGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-DEASG-VV 206 (1115)
Q Consensus 133 ~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~-~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~-s~dg~-~L 206 (1115)
..+..+... .+..+. +.|+.+.+|+...+. .... ....+ ...+..+.+ ++++. .+
T Consensus 66 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~~ 126 (466)
T COG2319 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS------------------LEGLH-DSSVSKLALSSPDGNSIL 126 (466)
T ss_pred ceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE------------------EeccC-CCceeeEEEECCCcceEE
Confidence 344444444 333332 469999999988765 2221 01011 114555555 77777 55
Q ss_pred EEEeC-CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeC-CCcEEEEeCCCcceeeccCCCcc
Q 001245 207 WSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE-GGGIKIWPWEAIEKALSLKPEER 283 (1115)
Q Consensus 207 aSGS~-DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~-DgtIrvWdl~t~~~~l~~~~~~~ 283 (1115)
+..+. |+++++|+.... ......+.+|...|.+++|+|+++ +++++. |+++++|++.+.....
T Consensus 127 ~~~~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 192 (466)
T COG2319 127 LASSSLDGTVKLWDLSTP-------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS------- 192 (466)
T ss_pred eccCCCCccEEEEEecCC-------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE-------
Confidence 55444 999999999840 134667899999999999999997 677775 9999999997633221
Q ss_pred eeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEe-ecCCeEEEEEcCCccEEEE-EecCCceeeEEec
Q 001245 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWS-AGFLSFALWDARTRELLKV-FNIDGQIENRVDM 360 (1115)
Q Consensus 284 ~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S-~sd~tI~lWD~~tg~ll~t-l~~~~~~~~~v~~ 360 (1115)
.+.+|. ..+.+++..+.+. .+.+ +.+++|++||..++..+.. +..
T Consensus 193 ------------~~~~~~----------~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~---------- 240 (466)
T COG2319 193 ------------TLAGHT----------DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG---------- 240 (466)
T ss_pred ------------eeccCC----------CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC----------
Confidence 112232 5566777776665 4555 3478899998876665542 211
Q ss_pred cCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCC
Q 001245 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGAN 439 (1115)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~D 439 (1115)
|...+ ...+++++ .+++++.|
T Consensus 241 ---------------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 241 ---------------------------------------------------------HSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred ---------------------------------------------------------CCcce-eEeECCCCCEEEEecCC
Confidence 11111 11466666 46789999
Q ss_pred CeEEEEcC-CCC-eeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccccc--cccCCEEEEEec--CCE
Q 001245 440 GLLLQWDP-NGN-RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV--AHSSPVIKMAVG--AGY 510 (1115)
Q Consensus 440 gtIklWD~-tG~-~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~--gH~~~V~sva~d--g~~ 510 (1115)
+++++||. ... ++..+.+|...|.++. +++..+++++.|+.+++||.. +....... +|...|..+.+. +..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
T COG2319 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342 (466)
T ss_pred CcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCE
Confidence 99999999 444 3566678889999988 567889989999999999986 44444444 898888888762 245
Q ss_pred EEee-cCCCceEEeeecCC
Q 001245 511 IFTL-ANHGGIRGWNVTSP 528 (1115)
Q Consensus 511 laSg-S~DgtIRlWdl~~p 528 (1115)
++.+ +.|+.+++|++...
T Consensus 343 ~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 343 LVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEeecCCCcEEeeecCCC
Confidence 5555 78899999998753
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=7.7e-13 Score=142.64 Aligned_cols=270 Identities=16% Similarity=0.163 Sum_probs=162.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
...|+.|++.|.+||.|..||.|.+||+.| +.....+.||..||+||++|+||+ |+|+|.|..|++||+..
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDT--------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccc--------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 478999999999999999999999999997 344567899999999999999998 89999999999999977
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecC
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~ 351 (1115)
+.+...+ .+ ...+.+....|...-++++. --...-.+-++..++ +++
T Consensus 97 gs~l~ri-----------------rf--~spv~~~q~hp~k~n~~va~---------~~~~sp~vi~~s~~~--h~~--- 143 (405)
T KOG1273|consen 97 GSPLKRI-----------------RF--DSPVWGAQWHPRKRNKCVAT---------IMEESPVVIDFSDPK--HSV--- 143 (405)
T ss_pred CCceeEE-----------------Ec--cCccceeeeccccCCeEEEE---------EecCCcEEEEecCCc--eee---
Confidence 6543111 00 01011111111111111111 000000011110000 000
Q ss_pred CceeeEEeccCCCCccccccceEEEEecCCCCccc-eeeeeeccccceEEeccCcEEEEecccc------cccCC-CceE
Q 001245 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQ-SSFGFFQRSRNAIMGAADAVRRVAAKGG------FGDDN-RRTE 423 (1115)
Q Consensus 352 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~f~~~~~~~~~Gs~d~v~~~~~~g~------l~~h~-~~V~ 423 (1115)
++.+ ++. ..... ...-|...+..+++|.+.|-..+....+ |.-.+ ..|.
T Consensus 144 --------Lp~d------~d~---------dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK 200 (405)
T KOG1273|consen 144 --------LPKD------DDG---------DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIK 200 (405)
T ss_pred --------ccCC------Ccc---------ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeee
Confidence 0000 000 00000 0112445577788887766444433211 11112 4566
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEcCC-----C---Ce--eEEee---cCCCcEEEEE--ecCCEEEeeec-ccEEEEEeC
Q 001245 424 ALTTSIDGM-IWTGGANGLLLQWDPN-----G---NR--LQDFQ---YLPFAVQCLC--TFGSQIWVGYM-NGIVQVLDL 486 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS~DgtIklWD~t-----G---~~--l~tl~---gH~~~V~sla--~dG~~LaSGs~-DGtIrlWD~ 486 (1115)
.+.++..|. ++.-+.|++||.+++. | ++ .+.+. .-..+ .+++ .||.++..|+. -..+.||..
T Consensus 201 ~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 201 QIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW-KKCCFSGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred EEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh-hheeecCCccEEEeccccceeEEEEec
Confidence 677888887 7899999999999862 2 11 12221 11111 1233 57899988874 457999998
Q ss_pred C-Ccccccccccc-CCEEEEEecCC--EEEeecCCCceEEeeecCC
Q 001245 487 E-GNLLGGWVAHS-SPVIKMAVGAG--YIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 487 ~-G~ll~~l~gH~-~~V~sva~dg~--~laSgS~DgtIRlWdl~~p 528 (1115)
. |.+++.|.|-. +....|+.+.- .++|- ..|+|++|....+
T Consensus 280 ~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 280 SIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred CCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 7 99999999988 45666776654 35555 6789999998653
No 152
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.52 E-value=2.5e-12 Score=137.61 Aligned_cols=300 Identities=16% Similarity=0.194 Sum_probs=184.9
Q ss_pred ccceeeEEEEEe--CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCC
Q 001245 130 QIGCFLRTIVCT--EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASG 204 (1115)
Q Consensus 130 ~~~~~l~~l~~~--~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~ 204 (1115)
.+|--+.+|..+ ++++.. |+|+.|-|||+++...-.. .++...---.-+ -..+.+| .-.|..+.+=| |.+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~---s~li~k~~c~v~-~~h~~~H-ky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA---SGLIAKHKCIVA-KQHENGH-KYAISSAIWYPIDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh---ccceeheeeecc-ccCCccc-eeeeeeeEEeeecCc
Confidence 344445555554 666555 6899999999987652210 000000000000 0012244 44566666655 788
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc----EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD----LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 205 ~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~----L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
++.|+|.|.++|+||..+- .+...|+ -.+.|.+-+.||-.. +++|-.|-.||+=|+.+|.+..+
T Consensus 116 mFtssSFDhtlKVWDtnTl--------Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--- 183 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTL--------QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--- 183 (397)
T ss_pred eeecccccceEEEeecccc--------eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee---
Confidence 9999999999999999862 2233332 355777777777542 46788888999999999877632
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCE-EEeec-CCeEEEEEcCCc-cEEEEEecCCceeeE
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDARTR-ELLKVFNIDGQIENR 357 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~-v~S~s-d~tI~lWD~~tg-~ll~tl~~~~~~~~~ 357 (1115)
|.||. +.|..+..++...- |++++ |+.||+||++.. -|+.++..|...
T Consensus 184 ----------------LsGHr----------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k--- 234 (397)
T KOG4283|consen 184 ----------------LSGHR----------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK--- 234 (397)
T ss_pred ----------------ecccc----------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc---
Confidence 34555 45555555665544 34554 789999999865 566665322110
Q ss_pred EeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEE
Q 001245 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG 436 (1115)
Q Consensus 358 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSG 436 (1115)
+... ..+-..|.++|+.+|++.||. +|+.
T Consensus 235 ------------------------~~p~--------------------------~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 235 ------------------------RPPI--------------------------LKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ------------------------cCcc--------------------------ccccccccceeeeeeecccchhhhhc
Confidence 0000 001235778899999999997 8999
Q ss_pred eCCCeEEEEcC-CCCe-eEEee--cCCC----c--EEEEEecCCEEEeeecccEEEEEeC-CCccccccccccCCEEEEE
Q 001245 437 GANGLLLQWDP-NGNR-LQDFQ--YLPF----A--VQCLCTFGSQIWVGYMNGIVQVLDL-EGNLLGGWVAHSSPVIKMA 505 (1115)
Q Consensus 437 S~DgtIklWD~-tG~~-l~tl~--gH~~----~--V~sla~dG~~LaSGs~DGtIrlWD~-~G~ll~~l~gH~~~V~sva 505 (1115)
+.|..+++|+. +|+- ++.+- .|.. . |.+ .+...++---.++++.|.++ +|..++.|.+|-..|.+-+
T Consensus 265 gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~--~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~ 342 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQS--MDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAA 342 (397)
T ss_pred cCccceEEeecccCcccccccccccccccccceEEEee--cccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEe
Confidence 99999999998 6631 22111 1111 1 221 12222222223477778875 4778888888877777766
Q ss_pred ecC--CEEEeecCCCceEEeeecC
Q 001245 506 VGA--GYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 506 ~dg--~~laSgS~DgtIRlWdl~~ 527 (1115)
..+ +...+|+.|+.|.-|-...
T Consensus 343 ~~~~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 343 YRPDFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred ecCchhhhhccccCCccccccccc
Confidence 544 5689999999999998743
No 153
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.51 E-value=7e-12 Score=141.79 Aligned_cols=235 Identities=23% Similarity=0.350 Sum_probs=175.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCC-CEEEEEE-eCCCc-E-EE-EeCCCcEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-PVLSLCI-SSYGD-L-WS-GSEGGGIK 265 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~-~V~sVaf-SpdG~-L-~S-gS~DgtIr 265 (1115)
...+.++.+++.+..+++++.|+.+++|+...+. .....+.++.. .+..+.+ ++++. + +. ++.|++++
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 6789999999999999999999999999988621 13556667544 8888888 77776 4 34 34499999
Q ss_pred EEeCCC-cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCc
Q 001245 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (1115)
Q Consensus 266 vWdl~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg 342 (1115)
+|+..+ .... ..+..|. ..+..+++.+++..+++++ +.++++|++.++
T Consensus 138 ~~~~~~~~~~~-------------------~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 138 LWDLSTPGKLI-------------------RTLEGHS----------ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EEEecCCCeEE-------------------EEEecCc----------ccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 999976 2221 1122333 4566777777776666654 788999998875
Q ss_pred cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCce
Q 001245 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1115)
Q Consensus 343 ~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V 422 (1115)
..+.++.. |...|
T Consensus 189 ~~~~~~~~-------------------------------------------------------------------~~~~v 201 (466)
T COG2319 189 KPLSTLAG-------------------------------------------------------------------HTDPV 201 (466)
T ss_pred ceEEeecc-------------------------------------------------------------------CCCce
Confidence 55544321 34456
Q ss_pred EEEEEcCCCc-E-EEEeCCCeEEEEcC-CCCeeE-EeecCCCc-EEEEEecCCEEEeeecccEEEEEeCC-Cc-cccccc
Q 001245 423 EALTTSIDGM-I-WTGGANGLLLQWDP-NGNRLQ-DFQYLPFA-VQCLCTFGSQIWVGYMNGIVQVLDLE-GN-LLGGWV 495 (1115)
Q Consensus 423 ~aVa~S~Dg~-l-aSGS~DgtIklWD~-tG~~l~-tl~gH~~~-V~sla~dG~~LaSGs~DGtIrlWD~~-G~-ll~~l~ 495 (1115)
.++++++++. + ++++.|++|++||. .+.++. .+.+|... +.++.+++.++++++.|+.+++||+. .. .+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 6677777775 4 45589999999998 688888 79999887 45455888899999999999999986 33 244457
Q ss_pred cccCCEEEEEec--CCEEEeecCCCceEEeeecCC
Q 001245 496 AHSSPVIKMAVG--AGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 496 gH~~~V~sva~d--g~~laSgS~DgtIRlWdl~~p 528 (1115)
+|...|.++.+. +..+++++.|+++++|++...
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 899999999864 578888999999999987654
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.7e-12 Score=139.98 Aligned_cols=257 Identities=12% Similarity=0.123 Sum_probs=150.3
Q ss_pred CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC--CCEEEEEeCCCeEEEE
Q 001245 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMCW 218 (1115)
Q Consensus 142 ~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d--g~~LaSGS~DgtIrlW 218 (1115)
++++.+ ++|.+|+|||......-.. -+.. -..| .++|..+++.+- |+.||+.|+|+++++|
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~s~~W~-------------~Ts~--Wrah-~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSDSGTWS-------------CTSS--WRAH-DGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred CceeeeccCCCcEEEEeccCCCCceE-------------Eeee--EEec-CCcEEEEEecCccccceEEEEecCCceeee
Confidence 666666 6899999999754432221 0011 1245 678999998754 9999999999999999
Q ss_pred ECCCCCCC-CCCCCcceEEeecCCCCEEEEEEeCCC---cEEEEeCCCcEEEEeCCCccee--eccCCCcceeEEEEeee
Q 001245 219 KMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKA--LSLKPEERHTAALIVER 292 (1115)
Q Consensus 219 dl~~~~~~-~~~~~~~~~~l~GH~~~V~sVafSpdG---~L~SgS~DgtIrvWdl~t~~~~--l~~~~~~~~~~a~~~~~ 292 (1115)
.=...... .+..-....++...+..|+.|.|.|-- +|++++.||++||++.-..-.+ .++..|-..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~------- 161 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV------- 161 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc-------
Confidence 74211100 011222345677889999999999974 2799999999999986331110 0000000000
Q ss_pred eeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccc
Q 001245 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1115)
Q Consensus 293 ~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~ 372 (1115)
....+. +.....| --|+. +.. +.+.+ .|.+ +.+ .....
T Consensus 162 --------~~pp~~---~~~~~~C------------------vsWn~-sr~-------~~p~i-Avgs--~e~--a~~~~ 199 (361)
T KOG2445|consen 162 --------IDPPGK---NKQPCFC------------------VSWNP-SRM-------HEPLI-AVGS--DED--APHLN 199 (361)
T ss_pred --------cCCccc---ccCcceE------------------Eeecc-ccc-------cCceE-EEEc--ccC--Ccccc
Confidence 000000 0001111 12331 000 00000 0000 000 00000
Q ss_pred eEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC-C----cEEEEeCCCeEEEEcC
Q 001245 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-G----MIWTGGANGLLLQWDP 447 (1115)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D-g----~laSGS~DgtIklWD~ 447 (1115)
++.++. -.++-++|..-..+.+|...|..|+|+|. | .||+|+.|| |+||.+
T Consensus 200 ~~~Iye-----------------------~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v 255 (361)
T KOG2445|consen 200 KVKIYE-----------------------YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKV 255 (361)
T ss_pred ceEEEE-----------------------ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEE
Confidence 111111 01123344434457788999999999987 3 379999999 999987
Q ss_pred CC---------------------CeeEEeecCCCcEEEEEe--cCCEEEeeecccEEEEEeCC
Q 001245 448 NG---------------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 448 tG---------------------~~l~tl~gH~~~V~sla~--dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.+ +.+..+.+|.+.|+.+.. .|..|+|.+.||+||+|-.+
T Consensus 256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 43 234567889999999994 59999999999999999864
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=5.1e-14 Score=172.67 Aligned_cols=241 Identities=16% Similarity=0.212 Sum_probs=176.0
Q ss_pred EEEEEcCCCC----EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEe
Q 001245 195 MCMVGDEASG----VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (1115)
Q Consensus 195 ~~la~s~dg~----~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWd 268 (1115)
..|++.+.|. +||.|..||.|-+||...-. .+.....+.++..|+++|..|.|++.+. |+||+.||.|.|||
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~--~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII--ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhc--cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4667765444 59999999999999986410 0112233456788999999999999875 78999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEeecC-CeEEEEEcCCccEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAGF-LSFALWDARTRELLK 346 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~sd-~tI~lWD~~tg~ll~ 346 (1115)
+...+.-.+. + ...+.++|++++....- ..++|++. +.+-|||++..+.+-
T Consensus 146 lnn~~tP~~~-------------------------~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 146 LNKPETPFTP-------------------------G--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred cCCcCCCCCC-------------------------C--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 9763322111 0 11133677887765433 33456654 578999998655432
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
.|+.++. ...+..|+
T Consensus 199 ~ls~~~~-----------------------------------------------------------------~~~~S~l~ 213 (1049)
T KOG0307|consen 199 KLSDTPG-----------------------------------------------------------------RMHCSVLA 213 (1049)
T ss_pred ccccCCC-----------------------------------------------------------------ccceeeee
Confidence 2211100 01234566
Q ss_pred EcCCC--cEEEEeCCC---eEEEEcC--CCCeeEEeecCCCcEEEEE---ecCCEEEeeecccEEEEEeCC-Cccccccc
Q 001245 427 TSIDG--MIWTGGANG---LLLQWDP--NGNRLQDFQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 427 ~S~Dg--~laSGS~Dg---tIklWD~--tG~~l~tl~gH~~~V~sla---~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~ 495 (1115)
+.||. +|++++.|. .|.+||+ ....++++++|...|.+|. .|..+|+|.+.|+.|.+||.+ |+.+..+.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 77775 377777754 6999998 5789999999999999998 366999999999999999997 99999999
Q ss_pred cccCCEEEEEe---cCCEEEeecCCCceEEeeecCCC
Q 001245 496 AHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 496 gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~~p~ 529 (1115)
.-..++..+.+ ++..++.+|-||.|-|..+...+
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 98889999987 55678899999999999997643
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.50 E-value=6.2e-12 Score=147.21 Aligned_cols=306 Identities=15% Similarity=0.152 Sum_probs=185.3
Q ss_pred eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCC---EEEEEeCCCeEEEEE
Q 001245 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG---VVWSGHRDGRIMCWK 219 (1115)
Q Consensus 144 ~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~---~LaSGS~DgtIrlWd 219 (1115)
.++| |....|.+||..+..... ...+| ..+|+|+-+=|.++ .++||+.|++|++|.
T Consensus 26 ~~vafGa~~~Iav~dp~k~~i~t-------------------~l~GH-~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~ 85 (764)
T KOG1063|consen 26 GLVAFGAGPAIAVADPEKILIVT-------------------TLDGH-VARVNCVHWLPTSEIVAEMVSGDSDGRVILWK 85 (764)
T ss_pred ceEEecCCceEEEeCcccceeEE-------------------eccCC-ccceEEEEEcccccccceEEEccCCCcEEEEE
Confidence 3455 788899999987652221 22356 88999999988877 799999999999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEE-eCCCcEEEEeCCCcc--e--ee----------cc--CCCc
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSG-SEGGGIKIWPWEAIE--K--AL----------SL--KPEE 282 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~Sg-S~DgtIrvWdl~t~~--~--~l----------~~--~~~~ 282 (1115)
++.. .+..+.+++||...+.| ++..-.+.++ +.|+++.+||.+.-+ + .+ ++ .+..
T Consensus 86 l~~~------~~~~i~~~~g~~~~~~c--v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~ 157 (764)
T KOG1063|consen 86 LRDE------YLIKIYTIQGHCKECVC--VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNN 157 (764)
T ss_pred Eeeh------heEEEEeecCcceeEEE--EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccC
Confidence 9831 23456778887766544 4544344443 789999999984422 0 00 11 1111
Q ss_pred c-eeEEEEee--------------eeeeeecccceecceeeeecCCeEEEEEeCC---CCEEEeec-CCeEEEEEcCCcc
Q 001245 283 R-HTAALIVE--------------RSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 283 ~-~~~a~~~~--------------~~~~~l~~h~~~~~~~~~~s~~v~~las~~~---~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
+ .+.+.--. +....++||. +.++.+++... .-.|+|++ |..||||.+.-+.
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~----------DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSADSFARVAELEGHT----------DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGD 227 (764)
T ss_pred CcEEEEecCcceEEEEeccCCcceeEEEEeeccc----------hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecC
Confidence 0 01000000 0111223333 44555555332 23555655 6778888764222
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcE-EEEecccccccCCCce
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAV-RRVAAKGGFGDDNRRT 422 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v-~~~~~~g~l~~h~~~V 422 (1115)
.... . +.+ ...+...+....++. +.+ .++....-+.||..+|
T Consensus 228 ~~~~------~--------------~~e---------------~~~t~~~~~~~f~~l--~~i~~~is~eall~GHeDWV 270 (764)
T KOG1063|consen 228 DEDS------N--------------ERE---------------DSLTTLSNLPVFMIL--EEIQYRISFEALLMGHEDWV 270 (764)
T ss_pred Cccc------c--------------ccc---------------cccccccCCceeeee--eeEEEEEehhhhhcCcccce
Confidence 1110 0 000 000000000000000 011 1222234466999999
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEcC---CCC-----eeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC--C-
Q 001245 423 EALTTSIDGM-IWTGGANGLLLQWDP---NGN-----RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE--G- 488 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~DgtIklWD~---tG~-----~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~--G- 488 (1115)
.++.+.|++. |+|+|.|+++.+|-. +|- ++..+-|....-+... +++..+++-+..|-.++|-.. +
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc
Confidence 9999999994 899999999999976 352 3444433232344333 678888888889999999843 2
Q ss_pred -ccccccccccCCEEEEEec--CCEEEeecCCCceEEee
Q 001245 489 -NLLGGWVAHSSPVIKMAVG--AGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 489 -~ll~~l~gH~~~V~sva~d--g~~laSgS~DgtIRlWd 524 (1115)
.+.-...||.+.|.+|+.+ |.++.|+|.|.|-|++-
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeec
Confidence 3455678999999999975 89999999999999974
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2e-13 Score=156.77 Aligned_cols=128 Identities=26% Similarity=0.398 Sum_probs=90.2
Q ss_pred eeeEEEEEe--CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCc-eeeeccCCceEEEEEcCCCCEEEE
Q 001245 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 133 ~~l~~l~~~--~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~-~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
.++|.++.+ ..-|+. +.|++++||++..... +...+-.|. ....| .+||+|+++..++..++|
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~------------s~~~~~epi~tfraH-~gPVl~v~v~~n~~~~ys 361 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK------------SAEKDVEPILTFRAH-EGPVLCVVVPSNGEHCYS 361 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCC------------ccccceeeeEEEecc-cCceEEEEecCCceEEEe
Confidence 355555665 334544 6899999999943211 111122222 22356 899999999999999999
Q ss_pred EeCCCeEEEEECCCCCCC---CCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcce
Q 001245 209 GHRDGRIMCWKMNARLLD---SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK 274 (1115)
Q Consensus 209 GS~DgtIrlWdl~~~~~~---~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~ 274 (1115)
|+-||+||.|++-. +.+ +..+.....++.||++.|+.+++|+..+ |+|+|.|||+|+|+......
T Consensus 362 gg~Dg~I~~w~~p~-n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPP-NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eccCceeeeeccCC-CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 99999999998752 211 1112223447899999999999998765 99999999999999865433
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.48 E-value=3.1e-12 Score=143.89 Aligned_cols=275 Identities=15% Similarity=0.131 Sum_probs=174.0
Q ss_pred eccCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC--cEEEEeCCCc
Q 001245 188 VKGVSSVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG--DLWSGSEGGG 263 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d--g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG--~L~SgS~Dgt 263 (1115)
++ .+.|.|++|-|. -++||+|..-|.|-+||+.+... ....+..+..|.++|.+|.|+|.. +++|.|.|||
T Consensus 184 v~-~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 184 VT-DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----DKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ec-ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----ccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 45 778999999985 37999999999999999964221 123356788999999999999986 3899999999
Q ss_pred EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc
Q 001245 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg 342 (1115)
||+=|+++..-...++.+.. ..++ -.+-++.....+..++ .+.+.+||++++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d---------------------~~~f------s~~d~~~e~~~vl~~~~~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTD---------------------NIWF------SSLDFSAESRSVLFGDNVGNFNVIDLRTD 311 (498)
T ss_pred eeeeeecchhhHHHhhcCcc---------------------ceee------eeccccCCCccEEEeecccceEEEEeecC
Confidence 99999987432211111000 0000 0111222233333333 367889999886
Q ss_pred cE-EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----c--
Q 001245 343 EL-LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----G-- 413 (1115)
Q Consensus 343 ~l-l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g-- 413 (1115)
.- ..-+..|.+-++.+++.|... +.+++++-| ++++|+.. .
T Consensus 312 ~s~~~~~~lh~kKI~sv~~NP~~p------------------------------~~laT~s~D~T~kIWD~R~l~~K~sp 361 (498)
T KOG4328|consen 312 GSEYENLRLHKKKITSVALNPVCP------------------------------WFLATASLDQTAKIWDLRQLRGKASP 361 (498)
T ss_pred CccchhhhhhhcccceeecCCCCc------------------------------hheeecccCcceeeeehhhhcCCCCc
Confidence 53 222333444444455444322 334444443 34455542 1
Q ss_pred --ccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcCC--C---CeeEEeec---CCCcEE---EEE-ecCCEEEeeecc
Q 001245 414 --GFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPN--G---NRLQDFQY---LPFAVQ---CLC-TFGSQIWVGYMN 478 (1115)
Q Consensus 414 --~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~t--G---~~l~tl~g---H~~~V~---sla-~dG~~LaSGs~D 478 (1115)
....|...|.+..|||+| .|++-+.|.+|+|||.. + ..+.++.. |..+++ +.- |+-.++++|-.-
T Consensus 362 ~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~ 441 (498)
T KOG4328|consen 362 FLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP 441 (498)
T ss_pred ceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC
Confidence 124688899999999985 59999999999999983 1 33444432 112333 333 788999999998
Q ss_pred cEEEEEeCC-CccccccccccC-CEEEEE-ec--CCEEEee-cCCCceEEee
Q 001245 479 GIVQVLDLE-GNLLGGWVAHSS-PVIKMA-VG--AGYIFTL-ANHGGIRGWN 524 (1115)
Q Consensus 479 GtIrlWD~~-G~ll~~l~gH~~-~V~sva-~d--g~~laSg-S~DgtIRlWd 524 (1115)
..|-|+|-+ |+.+..+..-.. .|.++. ++ +..+++| +..|.|.||.
T Consensus 442 r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 442 RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 899999988 555666544433 555554 33 3334554 4667777775
No 159
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.47 E-value=3.5e-12 Score=138.12 Aligned_cols=251 Identities=14% Similarity=0.174 Sum_probs=172.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCC----CCCCCcceEEeecC-CCCEEEEEEe-------CCCcE-EEEeCCC
Q 001245 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLD----SDDGFGEVLSWQAH-RGPVLSLCIS-------SYGDL-WSGSEGG 262 (1115)
Q Consensus 196 ~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~----~~~~~~~~~~l~GH-~~~V~sVafS-------pdG~L-~SgS~Dg 262 (1115)
.+.++|||..|.+-+.|..+++|++-..... ....++...+++-- .+.|..-++= |+..| ++.|.|.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 3678999999999999999999998432211 11112222222211 2345555442 33345 6888999
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEc-CC
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA-RT 341 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~-~t 341 (1115)
-|++||.-+++..-++.. . .|.. .+ ....+|++++++..|+.+-..+|+++|+ +.
T Consensus 134 PIh~wdaftG~lraSy~~----------------y-dh~d--e~-----taAhsL~Fs~DGeqlfaGykrcirvFdt~Rp 189 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRA----------------Y-DHQD--EY-----TAAHSLQFSPDGEQLFAGYKRCIRVFDTSRP 189 (406)
T ss_pred ceeeeeccccccccchhh----------------h-hhHH--hh-----hhheeEEecCCCCeEeecccceEEEeeccCC
Confidence 999999988765422211 1 1110 00 1235789999999999888889999997 44
Q ss_pred ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCc
Q 001245 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (1115)
Q Consensus 342 g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~ 421 (1115)
|.-..+.. ... ++ ..+..+-
T Consensus 190 Gr~c~vy~-----------------------------t~~------------------------------~~-k~gq~gi 209 (406)
T KOG2919|consen 190 GRDCPVYT-----------------------------TVT------------------------------KG-KFGQKGI 209 (406)
T ss_pred CCCCcchh-----------------------------hhh------------------------------cc-cccccce
Confidence 44221110 000 00 0112234
Q ss_pred eEEEEEcCCC--cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeec-ccEEEEEeCC--Cccccc
Q 001245 422 TEALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYM-NGIVQVLDLE--GNLLGG 493 (1115)
Q Consensus 422 V~aVa~S~Dg--~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~-DGtIrlWD~~--G~ll~~ 493 (1115)
+.+++++|-. .++.|+--.++-|+.- .+.+++.+-+|.+.|+-|. +||..|.||+. |-.|..||+. +..+..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 5677777753 4789999999999987 7789999999999999988 79999999994 7789999986 778899
Q ss_pred cccccC-CEE----EEEecCCEEEeecCCCceEEeeecCCCC
Q 001245 494 WVAHSS-PVI----KMAVGAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 494 l~gH~~-~V~----sva~dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
|..|.+ .=. .++++|++|+||+.||.|++||+..++-
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 999987 222 3445799999999999999999987654
No 160
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.1e-11 Score=149.30 Aligned_cols=223 Identities=15% Similarity=0.159 Sum_probs=161.6
Q ss_pred eCCCCEEEEeCCCC-cccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKEL-YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg-~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
|+|+.||+|+.... ..+. +.. .+ +..|+|++. .+..+++|+.|++|.++....+..+
T Consensus 32 gsdg~ir~~~~~sd~e~P~------------------ti~-~~-g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 32 GSDGDIRKWKTNSDEEEPE------------------TID-IS-GELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred cCCCceEEeecCCcccCCc------------------hhh-cc-CceeEEEee--cccceEEeeccceEEEeeCCCCCcc
Confidence 89999999986543 2221 222 24 456777776 4559999999999999998753221
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecc
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~ 305 (1115)
..+.--+-+++.++|+-+|+ ++.||+|-.||+-++...... ..+++|.
T Consensus 90 --------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-------------------~~lrgh~---- 138 (933)
T KOG1274|consen 90 --------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-------------------KVLRGHD---- 138 (933)
T ss_pred --------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-------------------eeecccC----
Confidence 11223356899999999998 789999999999998764222 2346776
Q ss_pred eeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCc
Q 001245 306 FSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDK 384 (1115)
Q Consensus 306 ~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~ 384 (1115)
++|.++.+++.+..|++++ ++.|++||+.+|.+.+++.+-... .
T Consensus 139 ------apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-----------------------------n 183 (933)
T KOG1274|consen 139 ------APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-----------------------------N 183 (933)
T ss_pred ------CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc-----------------------------c
Confidence 7899999999999988765 899999999999988876321000 0
Q ss_pred cceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC-CcEEEEeCCCeEEEEcC-CCCeeEEeec--CCC
Q 001245 385 AQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQY--LPF 460 (1115)
Q Consensus 385 ~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D-g~laSGS~DgtIklWD~-tG~~l~tl~g--H~~ 460 (1115)
. + ..+..+..++++|+ |+++..+.|++|++++. +.+.+..+.. |..
T Consensus 184 ~-----------------------------~-~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss 233 (933)
T KOG1274|consen 184 E-----------------------------F-ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS 233 (933)
T ss_pred c-----------------------------c-cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc
Confidence 0 0 00223455788998 56999999999999999 5566666654 333
Q ss_pred cEEEEE--ecCCEEEeeecccEEEEEeCCC
Q 001245 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 461 ~V~sla--~dG~~LaSGs~DGtIrlWD~~G 488 (1115)
.+.++. |.|+|||+++.||.|-|||++.
T Consensus 234 ~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 234 KFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 355555 7899999999999999999873
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.47 E-value=2.2e-12 Score=142.67 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=108.0
Q ss_pred CCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--E
Q 001245 179 DGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--L 255 (1115)
Q Consensus 179 ~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L 255 (1115)
.+..|+.- +| +++|+.++++| +...|||||.|.+|++|.+-.+.+ ..+..+.+..|.||...|..|++.|... |
T Consensus 71 d~~~P~v~-GH-t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l-~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 71 DASYPLVC-GH-TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL-TRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred CCCCCCcc-Cc-cccccccccCccCCceeecCCCCceEEEEECCCccc-ccCcccceEEEeecceeEEEEeecccchhhH
Confidence 44556543 67 99999999998 578999999999999999854222 3344466788999999999999999875 7
Q ss_pred EEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeE
Q 001245 256 WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSF 334 (1115)
Q Consensus 256 ~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI 334 (1115)
+|+|.|.+|.+|++.|++..+++. |- +-+..+.++.+|.++++. -|+.|
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~--------------------hp----------d~i~S~sfn~dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD--------------------HP----------DMVYSMSFNRDGSLLCTTCKDKKV 197 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC--------------------CC----------CeEEEEEeccCCceeeeeccccee
Confidence 899999999999999987664321 32 345667777788888765 58999
Q ss_pred EEEEcCCccEEEEE
Q 001245 335 ALWDARTRELLKVF 348 (1115)
Q Consensus 335 ~lWD~~tg~ll~tl 348 (1115)
||||.++|+.+..-
T Consensus 198 Rv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 198 RVIDPRRGTVVSEG 211 (472)
T ss_pred EEEcCCCCcEeeec
Confidence 99999999987653
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.47 E-value=1.4e-12 Score=150.79 Aligned_cols=262 Identities=15% Similarity=0.214 Sum_probs=192.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
.|..++|.|||..|+-+..| .+-++|...| ....+++||++.|.+||++.||+ ++||+.|+.|-+|...-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG--------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDG--------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCc--------ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 67789999999988876655 6789998764 34678999999999999999998 68999999999998632
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecC
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNID 351 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~ 351 (1115)
- -++ -..|. +.+.|+.+.|-+..++|++-..+.+|........+- +..
T Consensus 85 E-G~L--------------------kYSH~----------D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~-kss 132 (1081)
T KOG1538|consen 85 E-GIL--------------------KYSHN----------DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH-KSS 132 (1081)
T ss_pred c-cee--------------------eeccC----------CeeeEeecCchHHHhhhcchhhccccChhhhhHHhh-hhh
Confidence 0 010 01344 568899999988889998877788998765432210 000
Q ss_pred CceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-----ccc---ccCCCceE
Q 001245 352 GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-----GGF---GDDNRRTE 423 (1115)
Q Consensus 352 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-----g~l---~~h~~~V~ 423 (1115)
..+ ..-....+++.++.|..++.+.+..+ +.. .+....|.
T Consensus 133 ~R~--------------------------------~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 133 SRI--------------------------------ICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred eeE--------------------------------EEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCce
Confidence 000 01122345677788887776554331 112 23567789
Q ss_pred EEEEcCCC------cEEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccc
Q 001245 424 ALTTSIDG------MIWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (1115)
Q Consensus 424 aVa~S~Dg------~laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~ 495 (1115)
+++++|.. .++......|+-++.++|+.+..-..-.-.-.|+. +.|.++..|+.|+.+.++-.+|-.+.++-
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg 260 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVG 260 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeecc
Confidence 99988752 36788889999999999987753222122233555 78999999999999999999998888887
Q ss_pred cccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 496 AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 496 gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
....+||+|+ +++++++-|..||||--+++..
T Consensus 261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 7778999998 5899999999999999999853
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.45 E-value=4.3e-12 Score=143.25 Aligned_cols=284 Identities=15% Similarity=0.150 Sum_probs=188.4
Q ss_pred eEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCC
Q 001245 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNA 222 (1115)
Q Consensus 144 ~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg-~~LaSGS~DgtIrlWdl~~ 222 (1115)
.++|+...++++||+.......+ +...-. ...+..+.+...+ -.+||-+.|..|++|.-.+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~-----------------~~~~t~-~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g 66 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSE-----------------YVHQTA-EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG 66 (673)
T ss_pred eeeeccCCceEEeecccccCccc-----------------cccCCC-CCcceeeeccccceEEEeecCCceeEEEecccC
Confidence 35566667999999886654433 111001 2246777777655 4566777899999998765
Q ss_pred CCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccc
Q 001245 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (1115)
Q Consensus 223 ~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~ 301 (1115)
... ....+..+.|- .-+||+...... ++||+..++|||||+....+. | .+.+|.
T Consensus 67 ~~~----~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h----------------r---~lkdh~ 121 (673)
T KOG4378|consen 67 KTP----EVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH----------------R---FLKDHQ 121 (673)
T ss_pred CCC----ccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh----------------h---hccCCc
Confidence 211 01111222332 223444333333 789999999999999743222 1 134555
Q ss_pred eecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEEecC-CceeeEEeccCCCCccccccceEEEEec
Q 001245 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNID-GQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (1115)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl~~~-~~~~~~v~~s~~~~~~~~~~~~~~~~~~ 379 (1115)
+.|.++-....+..|+++++ +.|.|-.+.|+..-.+|..+ ++.+.-+.+++
T Consensus 122 ----------stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~----------------- 174 (673)
T KOG4378|consen 122 ----------STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP----------------- 174 (673)
T ss_pred ----------ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc-----------------
Confidence 56777777777888999886 67999999999888888765 55533333333
Q ss_pred CCCCccceeeeeecccc-ceEE-eccCcEEEEecccc------cccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcCCC
Q 001245 380 SKKDKAQSSFGFFQRSR-NAIM-GAADAVRRVAAKGG------FGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNG 449 (1115)
Q Consensus 380 ~~~~~~~~~v~f~~~~~-~~~~-Gs~d~v~~~~~~g~------l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~tG 449 (1115)
..+ .+.+ +..+.|.+|+..|. ...|......|+|+|-.. +++.+.|+.|.+||...
T Consensus 175 --------------skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 175 --------------SKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred --------------ccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 222 1222 33345667776432 245777788899998765 68999999999999943
Q ss_pred -CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC--ccccccccccCCEEEEEecCC-EEE
Q 001245 450 -NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG--NLLGGWVAHSSPVIKMAVGAG-YIF 512 (1115)
Q Consensus 450 -~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G--~ll~~l~gH~~~V~sva~dg~-~la 512 (1115)
+....+. ...+..+|+ ++|.+|+.|...|.|.-+|+.+ ..+..+.+|...|++|+|... .++
T Consensus 241 ~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 241 QASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred ccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceee
Confidence 3344443 345777777 6899999999999999999874 578999999999999997544 444
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.45 E-value=2.4e-12 Score=141.84 Aligned_cols=203 Identities=20% Similarity=0.323 Sum_probs=141.9
Q ss_pred CCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCC-------CC-CCCCCcceEEeecCCCCEEEEEEeC--CCcEEEE
Q 001245 191 VSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNARL-------LD-SDDGFGEVLSWQAHRGPVLSLCISS--YGDLWSG 258 (1115)
Q Consensus 191 ~~~V~~la~s~--dg~~LaSGS~DgtIrlWdl~~~~-------~~-~~~~~~~~~~l~GH~~~V~sVafSp--dG~L~Sg 258 (1115)
.+.++-+..++ +..+.||=|..|.|.+|++..-. .. .....+++.++.||.+-=.+|+||| +|.|+||
T Consensus 151 ~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 34455555554 45677788899999999985211 00 1133456778999999999999999 5678999
Q ss_pred eCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeec-CCeEEE
Q 001245 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFAL 336 (1115)
Q Consensus 259 S~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~s-d~tI~l 336 (1115)
---+.|++|...++.=..-- + .+.+|. ..|..|+.++. ...++||+ |++|+|
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~-------------~---Pf~gH~----------~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQ-------------R---PFTGHT----------KSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred ccccceEeeeeccCceeecC-------------c---cccccc----------cchhhhccCCccCceEEeeecCceEEE
Confidence 88899999998774321100 1 112233 33445555553 34566776 899999
Q ss_pred EEcCCcc---EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccc
Q 001245 337 WDARTRE---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (1115)
Q Consensus 337 WD~~tg~---ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g 413 (1115)
||++.+. ++.+
T Consensus 285 WDiRs~~~~~~~~~------------------------------------------------------------------ 298 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST------------------------------------------------------------------ 298 (440)
T ss_pred EEecCCCccceeEe------------------------------------------------------------------
Confidence 9998763 1111
Q ss_pred ccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC----CCCeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEe
Q 001245 414 GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP----NGNRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 414 ~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~----tG~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD 485 (1115)
..|...|+.|.++.+-. ||+|+.||+++|||+ .|+++.+|+.|..+|+||. | +.+.|++++.|..|.|||
T Consensus 299 --kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 299 --KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred --eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 12333455556655543 899999999999998 3789999999999999999 3 478999999999999999
Q ss_pred CC
Q 001245 486 LE 487 (1115)
Q Consensus 486 ~~ 487 (1115)
+.
T Consensus 377 ls 378 (440)
T KOG0302|consen 377 LS 378 (440)
T ss_pred ee
Confidence 63
No 165
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.45 E-value=1.3e-10 Score=131.96 Aligned_cols=319 Identities=15% Similarity=0.178 Sum_probs=192.8
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
|.+.-+-|||-..+..... ..- . ...|...+|-|-+..|.--..-|.+-.|+++++..
T Consensus 177 s~~h~lSVWdWqk~~~~~~-----------------vk~--s-ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-- 234 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGP-----------------VKT--S-NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-- 234 (626)
T ss_pred CCccccchhhchhhhccCc-----------------cee--c-cceEEEEEeccCCCcEEEEeCCceEEEEEccCCce--
Confidence 5677888999765543321 111 1 33577888988655555556667899999987432
Q ss_pred CCCCcceEEeecC-CCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecce
Q 001245 228 DDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1115)
Q Consensus 228 ~~~~~~~~~l~GH-~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~ 306 (1115)
.+..-.++++ +..|.||+|.++|++++|-.+|+|-||+..+...... ..+|.
T Consensus 235 ---~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~-------------------~~aH~----- 287 (626)
T KOG2106|consen 235 ---VKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQ-------------------VHAHD----- 287 (626)
T ss_pred ---EEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeE-------------------eeecC-----
Confidence 3444456666 5689999999999999999999999999976433210 11343
Q ss_pred eeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEec--CCceeeEEeccCCCCccccccceEEEEecCCCC
Q 001245 307 SSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (1115)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~--~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (1115)
+-|-+|+...++..| |++ |..|.+||-.-.++..+--+ .|.+ . .......+..+.......+.......
T Consensus 288 -----ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~i-R-tv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 288 -----GGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPI-R-TVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred -----CceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCe-e-EEecCCCcEEEeeccceEEEeeecCC
Confidence 556677776665544 444 67899999322222111000 0111 1 11111111111000000011100000
Q ss_pred -------ccceeeeee--ccccceEEe-ccCcEEEEeccc-ccc-cCCCceEEEEEcCCCcEEEEeCCCeEEEEcCCCCe
Q 001245 384 -------KAQSSFGFF--QRSRNAIMG-AADAVRRVAAKG-GFG-DDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNR 451 (1115)
Q Consensus 384 -------~~~~~v~f~--~~~~~~~~G-s~d~v~~~~~~g-~l~-~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~ 451 (1115)
.....+++. +...+.++. .+..+++|+... .+. --...+.|+.|.|-|.+|.|+..|.--+-|.+.+-
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce
Confidence 001122332 333444544 444577776321 111 11246778889999988999999988888984444
Q ss_pred eEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC--Ccccccccc-ccCCEEEEEe--cCCEEEeecCCCceEEe
Q 001245 452 LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 452 l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~g-H~~~V~sva~--dg~~laSgS~DgtIRlW 523 (1115)
+-++.....++++|+ |+|.+||.|+.|+.|.|+-++ |+......- |-.+|+.+.+ |++++.|-|-|-.|-.|
T Consensus 440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 434433377888887 899999999999999999875 665444332 3368888874 89999999999999999
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.1e-12 Score=147.33 Aligned_cols=258 Identities=14% Similarity=0.127 Sum_probs=161.4
Q ss_pred eEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecC
Q 001245 234 VLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1115)
Q Consensus 234 ~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~ 312 (1115)
...++||++.|.+|...|.|. |+|||.|||||||.+.|+.|+.++.. ++
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------------------------------d~ 442 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------------------------------DS 442 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------------------------------cc
Confidence 345799999999999999998 89999999999999999988733211 23
Q ss_pred CeEEEEEeCCCC--EEEeecCCeEEEEEcCCccEEEEEecCCceeeEE--eccCCC-Ccccc------ccceEEEEecCC
Q 001245 313 DIKNLLSDHSRA--KVWSAGFLSFALWDARTRELLKVFNIDGQIENRV--DMSLLP-DFAME------DEFKTKIVTSSK 381 (1115)
Q Consensus 313 ~v~~las~~~~~--~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v--~~s~~~-~~~~~------~~~~~~~~~~~~ 381 (1115)
.|+|+++.+... .|+.+-...+.|-+..=|..+..-.... ...+. .-.+.. .+.+. ....+++.-.
T Consensus 443 ~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e-ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-- 519 (733)
T KOG0650|consen 443 EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE-LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK-- 519 (733)
T ss_pred eeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh-hhhcCCCccCCcccceeechhhhhhhccceEEEEe--
Confidence 456666655432 2232222334444443332221100000 00000 000000 00000 0000111111
Q ss_pred CCccceeeeeeccccceEEeccC----cEEEEecc-----cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCC
Q 001245 382 KDKAQSSFGFFQRSRNAIMGAAD----AVRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGN 450 (1115)
Q Consensus 382 ~~~~~~~v~f~~~~~~~~~Gs~d----~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~ 450 (1115)
..+....+...-+|..+++...+ .|..-+.. -.|....+.|.++.|.|-.- ++.+ +-..|+|||+ .++
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqe 598 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQE 598 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHH
Confidence 12223345556666666554332 22222211 12333446688888888754 5444 4568999999 788
Q ss_pred eeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC--CccccccccccCCEEEEEecCCE--EEeecCCCceEEee
Q 001245 451 RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAVGAGY--IFTLANHGGIRGWN 524 (1115)
Q Consensus 451 ~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~sva~dg~~--laSgS~DgtIRlWd 524 (1115)
++..+.....+|.+++ +.|.-|+.|+.|+.+..+|++ .+..++++-|...|.+|++++++ ++|||.||+|.|+-
T Consensus 599 lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 599 LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 8888887788899888 679999999999999999986 67899999999999999999885 88999999999986
Q ss_pred e
Q 001245 525 V 525 (1115)
Q Consensus 525 l 525 (1115)
-
T Consensus 679 g 679 (733)
T KOG0650|consen 679 G 679 (733)
T ss_pred e
Confidence 3
No 167
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.42 E-value=1.4e-11 Score=142.14 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=90.7
Q ss_pred ceEEEEEcC--CCcEEEEeCCCeEEEEcC--CC------CeeEEeecCCCcEEEEEe---cCCEEEeeecccEEEEEeCC
Q 001245 421 RTEALTTSI--DGMIWTGGANGLLLQWDP--NG------NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 421 ~V~aVa~S~--Dg~laSGS~DgtIklWD~--tG------~~l~tl~gH~~~V~sla~---dG~~LaSGs~DGtIrlWD~~ 487 (1115)
-|..+.+.| +.+||.|+.||.|+||-+ +| ..-..+++|...|++|.+ -...||+++.|-||+|||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 355566554 335999999999999998 33 345678999999999993 36899999999999999987
Q ss_pred -CccccccccccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 488 -GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 488 -G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
++....|.||++.|.+++ +||+.+||.+.||+||++.-++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 788889999999999999 4999999999999999998654
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.40 E-value=1.5e-10 Score=132.99 Aligned_cols=267 Identities=12% Similarity=0.172 Sum_probs=155.9
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIMCWKMNA-RLL 225 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS-~DgtIrlWdl~~-~~~ 225 (1115)
+.|++|++||+.+...+.. .......+....++++|+++.|+.|+ .++.|.+|+++. +.
T Consensus 9 ~~~~~I~~~~~~~~g~l~~------------------~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~- 69 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTL------------------LQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA- 69 (330)
T ss_pred CCCCCEEEEEECCCCceee------------------eeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-
Confidence 5789999999964322211 11111023456789999999987664 688999999963 11
Q ss_pred CCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeeccccee
Q 001245 226 DSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSV 303 (1115)
Q Consensus 226 ~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~ 303 (1115)
....... ...+....|+|+|+|+ |++++ .++.|.+|++++....... . . .+.+.
T Consensus 70 -----l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------~------~---~~~~~--- 125 (330)
T PRK11028 70 -----LTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------I------Q---IIEGL--- 125 (330)
T ss_pred -----eEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------e------e---eccCC---
Confidence 1111111 1234567899999998 66555 5899999999642111000 0 0 00000
Q ss_pred cceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCC
Q 001245 304 NGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSK 381 (1115)
Q Consensus 304 ~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~ 381 (1115)
.....+++++++..++.+. ++.|.+||+.+...+... ... . ..
T Consensus 126 --------~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~---~~~------------------~---~~--- 170 (330)
T PRK11028 126 --------EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ---EPA------------------E---VT--- 170 (330)
T ss_pred --------CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc---CCC------------------c---ee---
Confidence 1123455677777775443 578999998653221100 000 0 00
Q ss_pred CCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeC-CCeEEEEcCC---CC--eeEE
Q 001245 382 KDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDPN---GN--RLQD 454 (1115)
Q Consensus 382 ~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~-DgtIklWD~t---G~--~l~t 454 (1115)
+.. ......++++|||+ ++++.. +++|.+||++ |+ .+++
T Consensus 171 ----------------~~~------------------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 171 ----------------TVE------------------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred ----------------cCC------------------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 000 01234578899988 566665 8999999983 33 3455
Q ss_pred eecCC------CcEEEEE--ecCCEEEeeec-ccEEEEEeCC--CccccccccccC---CEEEEE--ecCCEEEeec-CC
Q 001245 455 FQYLP------FAVQCLC--TFGSQIWVGYM-NGIVQVLDLE--GNLLGGWVAHSS---PVIKMA--VGAGYIFTLA-NH 517 (1115)
Q Consensus 455 l~gH~------~~V~sla--~dG~~LaSGs~-DGtIrlWD~~--G~ll~~l~gH~~---~V~sva--~dg~~laSgS-~D 517 (1115)
+..+. .....++ |+|++|+++.. +++|.+|+++ +.. .++.+|.. ....++ +||++|+++. .+
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 44321 1222344 89999999864 7899999974 321 23333322 222344 6899988766 48
Q ss_pred CceEEeeecC
Q 001245 518 GGIRGWNVTS 527 (1115)
Q Consensus 518 gtIRlWdl~~ 527 (1115)
++|.+|++..
T Consensus 296 ~~v~v~~~~~ 305 (330)
T PRK11028 296 HHISVYEIDG 305 (330)
T ss_pred CcEEEEEEcC
Confidence 9999999853
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.8e-11 Score=135.33 Aligned_cols=269 Identities=14% Similarity=0.155 Sum_probs=187.1
Q ss_pred eeeEEEEEeCC-e--EEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc-CCceEEEEEcCCCC-EEE
Q 001245 133 CFLRTIVCTEE-Q--LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASG-VVW 207 (1115)
Q Consensus 133 ~~l~~l~~~~~-~--l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~la~s~dg~-~La 207 (1115)
..++.+.+|.. + |.||.|+++|++-++.-. -|+..++|= ..|+-|..|.|+|. .|+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------------------N~~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------------------NPKLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCcc-------------------ChhheeeeeccCccceeeecCCCceEEE
Confidence 34566777733 3 345899999999886322 123444431 56899999999999 999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC-CCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~-~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+++.-.....||+.+++. ..+..+.||. ..+..-.+|+++. |+..+..|.|-|--..|++.+.++.
T Consensus 275 ~s~rrky~ysyDle~ak~------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K------ 342 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKV------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK------ 342 (514)
T ss_pred ecccceEEEEeecccccc------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee------
Confidence 999999999999987543 2233445663 4677888999998 7889999999988877765442221
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe-ecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S-~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
..+.+..++++.++..||. ++++.|.+||+++..+++.|..+|.+.
T Consensus 343 ------------------------ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~--------- 389 (514)
T KOG2055|consen 343 ------------------------IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH--------- 389 (514)
T ss_pred ------------------------eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccc---------
Confidence 1134555666666666665 457899999999999999997766551
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-ccccc-----------CCCceEEEEEcCCCc
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGD-----------DNRRTEALTTSIDGM 432 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g~l~~-----------h~~~V~aVa~S~Dg~ 432 (1115)
.++++.+.++..+++|+.-+|..++.. ..+.+ -+..|..+.|++|++
T Consensus 390 ---------------------gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 390 ---------------------GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred ---------------------eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 123455566778888998888877652 22221 234678899999998
Q ss_pred E-EEE--eCCCeEEEEcC-CCCeeEEeec---CCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 433 I-WTG--GANGLLLQWDP-NGNRLQDFQY---LPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 433 l-aSG--S~DgtIklWD~-tG~~l~tl~g---H~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
| |.+ ..+..+||=-+ .-..-..|.. --+-|+||+ |.|.+||.|..+|.|.||-+
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 4 434 44778888876 4333333322 223588998 67899999999999999975
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.39 E-value=1.6e-11 Score=136.11 Aligned_cols=205 Identities=16% Similarity=0.223 Sum_probs=138.1
Q ss_pred EeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCC
Q 001245 236 SWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (1115)
Q Consensus 236 ~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~ 313 (1115)
.+.||+++|..++|+|-.+ |||||+|.||+||++-.......++. ....|.||. -.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte------------pvv~L~gH~----------rr 133 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE------------PVVELYGHQ----------RR 133 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc------------ceEEEeecc----------ee
Confidence 4679999999999999765 89999999999999865433222221 123456665 23
Q ss_pred eEEEEEeCCC-CEEEe-ecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeee
Q 001245 314 IKNLLSDHSR-AKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1115)
Q Consensus 314 v~~las~~~~-~~v~S-~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 391 (1115)
|-.++..+.. ..|.| ++|.+|.|||+.||+.+-++.
T Consensus 134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~------------------------------------------ 171 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD------------------------------------------ 171 (472)
T ss_pred EEEEeecccchhhHhhccCCceEEEEeccCCceeeecC------------------------------------------
Confidence 3333333321 22334 457899999999998765543
Q ss_pred eccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCc--EEEEE-
Q 001245 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA--VQCLC- 466 (1115)
Q Consensus 392 ~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~--V~sla- 466 (1115)
|..-|.++.|+.||. ++|.+.|+.||+||. +|+.++.-.+|.+. ...|-
T Consensus 172 --------------------------hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 172 --------------------------HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL 225 (472)
T ss_pred --------------------------CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe
Confidence 223455677888887 789999999999999 99999988888764 44444
Q ss_pred ecCCEEEeee---cccEEEEEeCC----CccccccccccCCEEEEE-ecCCEEEeec-CCCceEEeeecCCCC
Q 001245 467 TFGSQIWVGY---MNGIVQVLDLE----GNLLGGWVAHSSPVIKMA-VGAGYIFTLA-NHGGIRGWNVTSPGP 530 (1115)
Q Consensus 467 ~dG~~LaSGs---~DGtIrlWD~~----G~ll~~l~gH~~~V~sva-~dg~~laSgS-~DgtIRlWdl~~p~p 530 (1115)
.+|..+-+|- ++..|-|||.+ .-.+.++..-++.+.=.. .|-+.++-+| .|+.||-+.+..-.|
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 5777444442 57889999964 223455655544333222 3556666544 799999999876443
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=2.9e-11 Score=136.30 Aligned_cols=272 Identities=15% Similarity=0.246 Sum_probs=188.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWd 268 (1115)
.++|.||.|-|...+|.+|+.||++|++.+++.. ++ .++.+.=-.-||.+.+|.|+|+ ++++|.-.-...||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~----N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV----NP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc----Ch--hheeeeeccCccceeeecCCCceEEEecccceEEEEee
Confidence 4689999999999999999999999999998621 21 2233322367999999999997 68999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~t 347 (1115)
+++.+.. .+.+ +.++. ...+.....++++..|+.+| .+-|.|--+.|++++.+
T Consensus 287 le~ak~~-k~~~----------------~~g~e---------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s 340 (514)
T KOG2055|consen 287 LETAKVT-KLKP----------------PYGVE---------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITS 340 (514)
T ss_pred ccccccc-cccC----------------CCCcc---------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhe
Confidence 9886432 1111 11221 02234455667777777766 47799999999999999
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecccc-ceEEeccCcEEEEecccccccC----CC--
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAKGGFGDD----NR-- 420 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~Gs~d~v~~~~~~g~l~~h----~~-- 420 (1115)
|+..|.+ .. ++|+.+++ .+++|+.+.|..|+.......| .+
T Consensus 341 ~KieG~v-~~-------------------------------~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 341 FKIEGVV-SD-------------------------------FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred eeeccEE-ee-------------------------------EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 9876655 22 23333433 2344555566666543221111 11
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcCC-------CCeeEEeecCCCcEEEEE--ecCCEEEeee--cccEEEEEeCCC
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDPN-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGY--MNGIVQVLDLEG 488 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~t-------G~~l~tl~gH~~~V~sla--~dG~~LaSGs--~DGtIrlWD~~G 488 (1115)
.-++++.|.+|. +|+||..|.|.|||.+ -+++.++..-.-.|++|. +|++.||.+| .+..+||--+-.
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 234688889987 7999999999999962 256666666667888888 6899999887 467888877542
Q ss_pred -cccccccc---ccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 489 -NLLGGWVA---HSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 489 -~ll~~l~g---H~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
.....|.. --+-|+||+| .|.++|-|-.+|.+.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 22233322 2245889986 57899999999999999874
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=7.6e-11 Score=123.61 Aligned_cols=184 Identities=19% Similarity=0.250 Sum_probs=125.4
Q ss_pred cccceeeEEEEEeCCeEEEeCCCCEEEEeCCCCcc-cccccccccccCCCCCCCCCcee-eeccCCceEEEEEcCCCCEE
Q 001245 129 TQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELYD-ESESDSVSVSKSKGEDGTAPFKE-SVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 129 ~~~~~~l~~l~~~~~~l~ag~D~tvrvWdl~tg~~-~~~~~~~~~~~~~~d~~~~~~~~-s~~G~~~V~~la~s~dg~~L 206 (1115)
..+.-.+..++.++.-|+.++|+.|+-|.-.+... ..+ .+-=+-..|+.. .+. ...|++|-++|..+-|
T Consensus 59 qahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~--------K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi 129 (325)
T KOG0649|consen 59 QAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLAT--------KRLWEVKIPMQVDAVE-VPEINAMWLDPSENSI 129 (325)
T ss_pred cccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccc--------hhhhhhcCccccCccc-CCccceeEeccCCCcE
Confidence 33455677889999999999999999987543322 110 000011122221 111 4468999999987777
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEE-eCCCcEEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI-SSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVaf-SpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+.++.|+.|.-||+++| +...+++||++.|.+|+- +.+++++||++|||+||||..|+++...+.+...
T Consensus 130 ~~AgGD~~~y~~dlE~G--------~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-- 199 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDG--------RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-- 199 (325)
T ss_pred EEecCCeEEEEEEecCC--------EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC--
Confidence 77889999999999985 346689999999999998 7788999999999999999999877643322110
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEec
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~ 350 (1115)
.-.+|.|. ...+-+++. +..-++.++...+.||.+++-++..+|.-
T Consensus 200 --------~~~lRp~~---------g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 200 --------PNLLRPDW---------GKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred --------hhhcCccc---------CceeEEEec--cCceEEecCCCceeEEeccCCCceEEEec
Confidence 01122222 122334443 34556666777899999999998888743
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.38 E-value=4.1e-12 Score=134.51 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=62.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee-cCCCCEEEEEEeCCCcEEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~-GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl 269 (1115)
.+.|+|+-|..+++ |.+|..-|.+++|++.+. +....|+ .|+..|+.+...|++.|.+=+.|+++.+|++
T Consensus 14 ~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~--------r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 14 SSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE--------RDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred cchheehhhccchh-hhcccccceEEEEEeecC--------ccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 77899999988765 999999999999999873 2345677 5688999999999888999999999999998
Q ss_pred CC
Q 001245 270 EA 271 (1115)
Q Consensus 270 ~t 271 (1115)
.-
T Consensus 85 a~ 86 (323)
T KOG0322|consen 85 AY 86 (323)
T ss_pred cC
Confidence 76
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=5.6e-11 Score=144.08 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=168.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC---CCCEEEEEEeCCCc---EEEEeCCCcEEE
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD---LWSGSEGGGIKI 266 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH---~~~V~sVafSpdG~---L~SgS~DgtIrv 266 (1115)
+...+.|.|=...|+++...-+|++||.+.+.+ ...|.-+ ...|+.|.+-.+-. |++||.||.|||
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~--------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL--------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCce--------eccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 344566777666788887677899999986432 1122212 44699999876543 689999999999
Q ss_pred EeCC-CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccE
Q 001245 267 WPWE-AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTREL 344 (1115)
Q Consensus 267 Wdl~-t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~l 344 (1115)
|+-- +.... .+-+.+. ..|.++. ....+.-..+......+.+.++|+ ..|+|||+..-.+
T Consensus 1138 wk~y~~~~~~------~eLVTaw------~~Ls~~~------~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~ 1199 (1387)
T KOG1517|consen 1138 WKDYADKWKK------PELVTAW------SSLSDQL------PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV 1199 (1387)
T ss_pred ecccccccCC------ceeEEee------ccccccC------ccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccccee
Confidence 9632 21010 0001111 1122221 101111111222233444555554 7899999987666
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc---------ccc
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK---------GGF 415 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~---------g~l 415 (1115)
++.+...... .+...+ +-...+..++.|-+||..++... -..
T Consensus 1200 ~~diP~~s~t------------------~vTaLS-----------~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1200 VADIPYGSST------------------LVTALS-----------ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred EeecccCCCc------------------cceeec-----------ccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 6544211100 000000 11122456677777776666542 112
Q ss_pred ccCCCc--eEEEEEcCCC--cEEEEeCCCeEEEEcCCCCee---EEeecCC--C-cEEEEE--ecCCEEEeeecccEEEE
Q 001245 416 GDDNRR--TEALTTSIDG--MIWTGGANGLLLQWDPNGNRL---QDFQYLP--F-AVQCLC--TFGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 416 ~~h~~~--V~aVa~S~Dg--~laSGS~DgtIklWD~tG~~l---~tl~gH~--~-~V~sla--~dG~~LaSGs~DGtIrl 483 (1115)
..|... |..+.+-+.| .|+|||.||.|++||+.+... -++..|. + .++++. .+...+|+|+. +.|+|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEE
Confidence 346555 6666665544 599999999999999954222 2233443 3 488887 57889999999 99999
Q ss_pred EeCCCccccccccc-------cCCEEEEEecCC--EEEeecCCCceEEeeecCC
Q 001245 484 LDLEGNLLGGWVAH-------SSPVIKMAVGAG--YIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 484 WD~~G~ll~~l~gH-------~~~V~sva~dg~--~laSgS~DgtIRlWdl~~p 528 (1115)
|++.|+++..++-+ .+.+.|+++++- .+|.|+.|.+|-|+....+
T Consensus 1330 y~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1330 YSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999887776644 246788998775 4778899999999986543
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.37 E-value=1.9e-11 Score=132.97 Aligned_cols=250 Identities=14% Similarity=0.191 Sum_probs=166.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC-c-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 203 g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG-~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
+-+||.|+.-|.||+-|+..+++ ...+.||.++|+.|.|.|+. + |+|||.|.+||+|++++..|...+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~--------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf-- 174 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQC--------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF-- 174 (385)
T ss_pred CeeEEeecceeEEEEEecchhhh--------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe--
Confidence 55788899999999999987543 45689999999999999987 3 689999999999999998776332
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEe
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~ 359 (1115)
-.+.+|. +.|..+-++.++.+++|++ |.++++|++...+.-..+ +....
T Consensus 175 --------------GG~egHr----------deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~l------E~s~~ 224 (385)
T KOG1034|consen 175 --------------GGVEGHR----------DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKL------ELSIT 224 (385)
T ss_pred --------------ccccccc----------CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhh------hhhcc
Confidence 2345666 7788888999999999987 789999998754432111 11111
Q ss_pred ccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCC
Q 001245 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGAN 439 (1115)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~D 439 (1115)
+++.... ++ ..+....+++ ++ +-.-|..-|.|+.+-. ..++|-|.+
T Consensus 225 ~~~~~t~--------------~p--fpt~~~~fp~----fs-------------t~diHrnyVDCvrw~g-d~ilSksce 270 (385)
T KOG1034|consen 225 YSPNKTT--------------RP--FPTPKTHFPD----FS-------------TTDIHRNYVDCVRWFG-DFILSKSCE 270 (385)
T ss_pred cCCCCcc--------------Cc--CCcccccccc----cc-------------ccccccchHHHHHHHh-hheeecccC
Confidence 1111100 00 0000000000 00 0012444555554433 246787888
Q ss_pred CeEEEEcC-C-C-------------CeeEEeecCCCcEEEEE--ec--CCEEEeeecccEEEEEeCCC-c--cccccccc
Q 001245 440 GLLLQWDP-N-G-------------NRLQDFQYLPFAVQCLC--TF--GSQIWVGYMNGIVQVLDLEG-N--LLGGWVAH 497 (1115)
Q Consensus 440 gtIklWD~-t-G-------------~~l~tl~gH~~~V~sla--~d--G~~LaSGs~DGtIrlWD~~G-~--ll~~l~gH 497 (1115)
+.|..|-. . + ..+.++......|+-|. .| +++||.|...|.|.+||++. . ...++..+
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 89999965 1 1 23556666667777776 33 89999999999999999862 2 33444433
Q ss_pred cC--CEEEE--EecCCEEEeecCCCceEEeeec
Q 001245 498 SS--PVIKM--AVGAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 498 ~~--~V~sv--a~dg~~laSgS~DgtIRlWdl~ 526 (1115)
.+ .|... +.||+.|+-...|++|--||..
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 32 34443 3599999999999999999854
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.9e-11 Score=132.24 Aligned_cols=257 Identities=11% Similarity=0.119 Sum_probs=166.1
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC-C-c-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-G-D-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G-~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
..+|.|-..|+||++|..+++ ....++||.+.++.|.|..+ + . +.|||.||+||+||+.+....-.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~--- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR--- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh---
Confidence 568899999999999998743 35578999999999999875 2 3 78999999999999987433211
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-----CCeEEEEEcCCccE-EEEEe-cCCc
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-----FLSFALWDARTREL-LKVFN-IDGQ 353 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-----d~tI~lWD~~tg~l-l~tl~-~~~~ 353 (1115)
+...++. .....|++.......+..+. +-.+.+||++..+. ++.+. .|..
T Consensus 110 --------------~~~~~~~---------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D 166 (376)
T KOG1188|consen 110 --------------ISWTQQS---------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND 166 (376)
T ss_pred --------------eeccCCC---------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC
Confidence 1111111 12344555544444444443 24588999998765 55542 2333
Q ss_pred eeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecc-ccceEEeccCcEEEE-ecccc--------cccCCCceE
Q 001245 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAADAVRRV-AAKGG--------FGDDNRRTE 423 (1115)
Q Consensus 354 ~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~-~~~~~~Gs~d~v~~~-~~~g~--------l~~h~~~V~ 423 (1115)
-++.+. |.|. ...+++|+.|+...+ +.++. -..+...|.
T Consensus 167 DVT~lr-------------------------------FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~ 215 (376)
T KOG1188|consen 167 DVTQLR-------------------------------FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH 215 (376)
T ss_pred cceeEE-------------------------------ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence 333333 4433 346678888876554 33221 123456688
Q ss_pred EEEEcCCC--cEEEEeCCCeEEEEcC-CCCeeEEeec-------------CCCcEEEEEe-cCCEEEeeec-cc--EEEE
Q 001245 424 ALTTSIDG--MIWTGGANGLLLQWDP-NGNRLQDFQY-------------LPFAVQCLCT-FGSQIWVGYM-NG--IVQV 483 (1115)
Q Consensus 424 aVa~S~Dg--~laSGS~DgtIklWD~-tG~~l~tl~g-------------H~~~V~sla~-dG~~LaSGs~-DG--tIrl 483 (1115)
.+.|..++ +|+.-+..++..+|++ .|.+...+.. -..-|.+..+ ++...+.++. -+ +|..
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~ 295 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFP 295 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEE
Confidence 89999998 6888889999999999 6755433322 1123445554 4445554443 34 4444
Q ss_pred Ee-CC----Ccccccccc-ccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 484 LD-LE----GNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 484 WD-~~----G~ll~~l~g-H~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
.. .. ++.+..+.| |.+.|.++.+ .+.+++|||.||.+.+|..
T Consensus 296 ~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 296 LVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 43 22 345677877 6777888775 5778999999999999986
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.34 E-value=1.2e-10 Score=129.84 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=114.2
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCC-CCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEE
Q 001245 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSD-DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~-~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvW 267 (1115)
..+|..+.|-+++. .||||+.|..||+|-++.+...++ ...+-...|..|..+|++|.|+|+|+ |+||+++|.|-+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999998866 999999999999999875432111 11222346789999999999999998 6899999999999
Q ss_pred eCCCcceeeccCC--CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 268 PWEAIEKALSLKP--EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 268 dl~t~~~~l~~~~--~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
-.......-.-++ ..+..+.+ ...+++|. .++..++.++++..+.+++ |.++++||++.|.+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v-----~k~lr~h~----------~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVV-----KKVLRGHR----------DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred EecCcCCccccchhhhCccceEE-----EEEecccc----------cchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 8763110000000 00111111 12345665 6788888898888888765 78999999999999
Q ss_pred EEEEecCCceeeEEeccC
Q 001245 345 LKVFNIDGQIENRVDMSL 362 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~ 362 (1115)
+..+..|.+.+..++..|
T Consensus 158 ~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDP 175 (434)
T ss_pred Eeeccccccccceeecch
Confidence 999999998877777655
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.34 E-value=5.5e-11 Score=127.30 Aligned_cols=246 Identities=18% Similarity=0.206 Sum_probs=162.5
Q ss_pred CCceEEEEEcCC-CCEEEEEeCC-------CeEEEEECCCCCCC-CCCCCcceEEee-cCCCCEEEEEEeCCCc-EEEEe
Q 001245 191 VSSVMCMVGDEA-SGVVWSGHRD-------GRIMCWKMNARLLD-SDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGS 259 (1115)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGS~D-------gtIrlWdl~~~~~~-~~~~~~~~~~l~-GH~~~V~sVafSpdG~-L~SgS 259 (1115)
.+.|..++-+|- .++|+|.-.| ..+-+|.+...... ...+.+++..|. .|-+.|.||.|.|+++ |++--
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 456777777774 4455554332 35789998642211 122244444553 5667999999999987 66554
Q ss_pred CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEc
Q 001245 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (1115)
Q Consensus 260 ~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~ 339 (1115)
|..|-+|+++....+. +.++...+ .. ..|.-..|.+. | -+++..+++.++.++.-||+
T Consensus 143 -dn~i~l~~l~ess~~v---------aev~ss~s-~e-~~~~ftsg~Ws-p---------HHdgnqv~tt~d~tl~~~D~ 200 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIV---------AEVLSSES-AE-MRHSFTSGAWS-P---------HHDGNQVATTSDSTLQFWDL 200 (370)
T ss_pred -cCceEEEEcccCcchh---------eeeccccc-cc-ccceecccccC-C---------CCccceEEEeCCCcEEEEEc
Confidence 8999999998754421 00000000 00 00111111111 1 24567778888899999999
Q ss_pred CCccEEEEE-ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccC
Q 001245 340 RTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (1115)
Q Consensus 340 ~tg~ll~tl-~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h 418 (1115)
+|-.+...+ ..|+|
T Consensus 201 RT~~~~~sI~dAHgq----------------------------------------------------------------- 215 (370)
T KOG1007|consen 201 RTMKKNNSIEDAHGQ----------------------------------------------------------------- 215 (370)
T ss_pred cchhhhcchhhhhcc-----------------------------------------------------------------
Confidence 875443222 12222
Q ss_pred CCceEEEEEcCCCc--EEEEeCCCeEEEEcC--CCCeeEEeecCCCcEEEEEe---cCCEEEeeecccEEEEEeCC--C-
Q 001245 419 NRRTEALTTSIDGM--IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE--G- 488 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~--laSGS~DgtIklWD~--tG~~l~tl~gH~~~V~sla~---dG~~LaSGs~DGtIrlWD~~--G- 488 (1115)
.|..+-|+|+.+ |+|++.||.|||||. +..+++++.+|+.+|++|.+ -.++|.+|++|..|-||... .
T Consensus 216 --~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 216 --RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred --eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 344445556554 799999999999998 56799999999999999993 47899999999999999631 0
Q ss_pred ---------------------------ccccccccccCCEEEEEe---cCCEEEeecCCCceEEeee
Q 001245 489 ---------------------------NLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 489 ---------------------------~ll~~l~gH~~~V~sva~---dg~~laSgS~DgtIRlWdl 525 (1115)
.++.++..|.+.|++++. |+=..||.|+||.+-|=.+
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 045688899999999995 6668899999999877554
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.34 E-value=1.5e-12 Score=154.06 Aligned_cols=238 Identities=17% Similarity=0.200 Sum_probs=169.3
Q ss_pred EEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCC
Q 001245 235 LSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (1115)
Q Consensus 235 ~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~ 313 (1115)
..+.||..+|.|++|...|. +++||+|..||||.+++..|. ..++||. ++
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-------------------As~rGhs----------~d 234 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-------------------ASCRGHS----------GD 234 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-------------------ccCCCCc----------cc
Confidence 35779999999999999997 899999999999999987665 2346776 78
Q ss_pred eEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeee
Q 001245 314 IKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (1115)
Q Consensus 314 v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 392 (1115)
+..++.+..+..+++++ |+.|++|-+.+|.++.++.+|...+++++|+|... ..++..+++|+..-. ...+.
T Consensus 235 itdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~s--ss~dgt~~~wd~r~~-----~~~y~ 307 (1113)
T KOG0644|consen 235 ITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRAS--SSDDGTCRIWDARLE-----PRIYV 307 (1113)
T ss_pred cchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcccc--CCCCCceEecccccc-----ccccC
Confidence 88888888777888877 67899999999999999999988888889988652 222233444432100 00011
Q ss_pred ccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCC---CCeeEEeecCCCcEEEEEec
Q 001245 393 QRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN---GNRLQDFQYLPFAVQCLCTF 468 (1115)
Q Consensus 393 ~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~t---G~~l~tl~gH~~~V~sla~d 468 (1115)
++. -.+.+. ..+.++.+-..+. .+||+.|++-+.|... ++-....- |+.....
T Consensus 308 prp-----------------~~~~~~-~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif-----~t~ssd~ 364 (1113)
T KOG0644|consen 308 PRP-----------------LKFTEK-DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF-----VTRSSDL 364 (1113)
T ss_pred CCC-----------------CCcccc-cceeeeeccccccccccccCCcccccchhhHhhhhccceEE-----Eeccccc
Confidence 110 001111 2334445555555 7999999999999762 22211111 1111111
Q ss_pred CCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe---cCCEEEeecCCCceEEeeecCCCCC
Q 001245 469 GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 469 G~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
..+.+++-.+-.+.+|++. |+++..+.||++.+..+.+ +.....|+++||.+-|||+..+.|+
T Consensus 365 ~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 365 SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred cccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 3566777788899999975 9999999999999998874 6677789999999999999877665
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.34 E-value=2.4e-11 Score=128.83 Aligned_cols=261 Identities=16% Similarity=0.144 Sum_probs=155.6
Q ss_pred ceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecC
Q 001245 233 EVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTS 312 (1115)
Q Consensus 233 ~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~ 312 (1115)
+...|++|.+.|+++.|-.+++|+||..-|.|++|++.+...... ++.+.. .
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~---------~ 57 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGR---------L 57 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchh-------------------hhhhcc---------c
Confidence 456788999999999999999999999999999999987432211 121210 1
Q ss_pred CeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccC-----CCCcc-----c----------c---
Q 001245 313 DIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL-----LPDFA-----M----------E--- 369 (1115)
Q Consensus 313 ~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~-----~~~~~-----~----------~--- 369 (1115)
.+..+-.-+++....-+-|..+.+|++.-+..+.. |+-+++.+.|-+ ..... + .
T Consensus 58 ~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 58 FITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred eeeceeecCCcchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence 22333333332222223367888999887665433 222222222211 11100 0 0
Q ss_pred ccceEEEEecCCCCccceeeeeec----ccc--ceEEeccC-cEEEEeccc---------------ccccCCCceEEEEE
Q 001245 370 DEFKTKIVTSSKKDKAQSSFGFFQ----RSR--NAIMGAAD-AVRRVAAKG---------------GFGDDNRRTEALTT 427 (1115)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~v~f~~----~~~--~~~~Gs~d-~v~~~~~~g---------------~l~~h~~~V~aVa~ 427 (1115)
+...+.+.+.....+. +++.+.. .+. .++.|-.+ .+..|+..- ....|...|.+|.+
T Consensus 135 ~~tqv~i~dd~~~~Kl-gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKL-GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred ccceeEccCchhcccc-CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 0011111111111111 1111111 122 34455544 466776531 11235667777765
Q ss_pred cCC-CcEEEEeCCCeEEEEcC---CCCee--EEeecCCCcEEE--EEecCCEEEeeecccEEEEEeCC-Ccccccccccc
Q 001245 428 SID-GMIWTGGANGLLLQWDP---NGNRL--QDFQYLPFAVQC--LCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (1115)
Q Consensus 428 S~D-g~laSGS~DgtIklWD~---tG~~l--~tl~gH~~~V~s--la~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~ 498 (1115)
.+- .+=++|+.+..+..|++ +|.+. .+++--.-.|.. |.+|++.+|+++-|+.|||+.-. ++.++.|+-|+
T Consensus 214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs 293 (323)
T KOG0322|consen 214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS 293 (323)
T ss_pred chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh
Confidence 432 12367888888999988 24332 112111223444 44999999999999999999965 89999999999
Q ss_pred CCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 499 SPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 499 ~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
+.|++|+| |...+|+||.|++|-+|++
T Consensus 294 agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999997 4468999999999999986
No 181
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.33 E-value=1e-10 Score=127.01 Aligned_cols=223 Identities=16% Similarity=0.150 Sum_probs=144.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCC---EEEEEEeCCCcEEEEeCCCcEEEEeCCC-ccee
Q 001245 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP---VLSLCISSYGDLWSGSEGGGIKIWPWEA-IEKA 275 (1115)
Q Consensus 200 s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~---V~sVafSpdG~L~SgS~DgtIrvWdl~t-~~~~ 275 (1115)
.|+..++|+.|+|.-|++||.-+|+. +....--.|.+. -.||+|||||.-+-++..++||+.|+.. +...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~l------raSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKL------RASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred CCccceeeeccccCceeeeecccccc------ccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC
Confidence 47788999999999999999987543 221222235433 3589999999844455788999999843 3211
Q ss_pred eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe-ec-CCeEEEEEcCCccEEEEEecCCc
Q 001245 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AG-FLSFALWDARTRELLKVFNIDGQ 353 (1115)
Q Consensus 276 l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S-~s-d~tI~lWD~~tg~ll~tl~~~~~ 353 (1115)
..... + .+. -+...+-+.|++++|...+... ++ .+.+-|+.-..+..+.+
T Consensus 194 -------~vy~t---------~-~~~-----k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l------ 245 (406)
T KOG2919|consen 194 -------PVYTT---------V-TKG-----KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL------ 245 (406)
T ss_pred -------cchhh---------h-hcc-----cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee------
Confidence 00000 0 000 0011133445555554332221 11 12233333222222222
Q ss_pred eeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-
Q 001245 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM- 432 (1115)
Q Consensus 354 ~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~- 432 (1115)
+.+|.+.|+.+.+-+||.
T Consensus 246 -------------------------------------------------------------lggh~gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 246 -------------------------------------------------------------LGGHGGGVTHLQWCEDGNK 264 (406)
T ss_pred -------------------------------------------------------------ecccCCCeeeEEeccCcCe
Confidence 335666777888888886
Q ss_pred EEEEeC-CCeEEEEcC--CCCeeEEeecCCC----cEE-EEEecCCEEEeeecccEEEEEeCC--CccccccccccCCEE
Q 001245 433 IWTGGA-NGLLLQWDP--NGNRLQDFQYLPF----AVQ-CLCTFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVI 502 (1115)
Q Consensus 433 laSGS~-DgtIklWD~--tG~~l~tl~gH~~----~V~-sla~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~ 502 (1115)
+.+|+. |-.|-.||+ .+..+-.|..|.. .|. .++++|++||+|+.||.|++||++ |+....+..|+..|+
T Consensus 265 lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 265 LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 888877 678999999 5788888888765 332 455889999999999999999997 787888899999999
Q ss_pred EEEecCC--EEEeecCC
Q 001245 503 KMAVGAG--YIFTLANH 517 (1115)
Q Consensus 503 sva~dg~--~laSgS~D 517 (1115)
.|++++. +++++|..
T Consensus 345 gvslnP~mpilatssGq 361 (406)
T KOG2919|consen 345 GVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceecCcccceeeeccCc
Confidence 9997765 46666543
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.3e-11 Score=131.65 Aligned_cols=200 Identities=18% Similarity=0.113 Sum_probs=125.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcc
Q 001245 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIE 273 (1115)
Q Consensus 195 ~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~ 273 (1115)
.+++|+.+|+.|++|+.||++|+|+...- ..+....+|.+.|.+|.|||||+ |+|-+.| ..+||+++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 78999999999999999999999996531 23456688999999999999998 7888888 89999999986
Q ss_pred eeeccCCCcce-eEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCC
Q 001245 274 KALSLKPEERH-TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG 352 (1115)
Q Consensus 274 ~~l~~~~~~~~-~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~ 352 (1115)
+....++.++. +.+. ..+......+...++..... .+.|++||+.
T Consensus 219 ~~a~~t~~~k~~~~~~---------------cRF~~d~~~~~l~laa~~~~-------~~~v~~~~~~------------ 264 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSS---------------CRFSVDNAQETLRLAASQFP-------GGGVRLCDIS------------ 264 (398)
T ss_pred hhhhcCCcccchhhhh---------------ceecccCCCceEEEEEecCC-------CCceeEEEee------------
Confidence 55443332110 0000 00000000011111110000 1223344421
Q ss_pred ceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc
Q 001245 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM 432 (1115)
Q Consensus 353 ~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~ 432 (1115)
+|+...-. ++ .+.......+.++++|+||+
T Consensus 265 -----------------------~w~~~~~l------------------------~~---~~~~~~~~siSsl~VS~dGk 294 (398)
T KOG0771|consen 265 -----------------------LWSGSNFL------------------------RL---RKKIKRFKSISSLAVSDDGK 294 (398)
T ss_pred -----------------------eecccccc------------------------ch---hhhhhccCcceeEEEcCCCc
Confidence 11111000 00 00111224577888999998
Q ss_pred -EEEEeCCCeEEEEcC-CCCeeEEe-ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 433 -IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 433 -laSGS~DgtIklWD~-tG~~l~tl-~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+|.|+.||.|-|++. +-++++-. +.|...|+.|. ||-+++++-+.|.++.|--+.
T Consensus 295 f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 295 FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 578888999999998 66766655 45888888888 788888888877777766543
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=8.4e-11 Score=133.34 Aligned_cols=275 Identities=16% Similarity=0.192 Sum_probs=180.6
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCC---cEEEEeCCCc
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG---DLWSGSEGGG 263 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG---~L~SgS~Dgt 263 (1115)
.| .+-|..|-|...|..|+|||.|.+|.+||...++ ..+.+ .||...|..-.|-|.. .|+++|.||.
T Consensus 140 ~H-~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 140 KH-KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred CC-CCccceeeecccCceeeccCccceEEeehhhccC--------cccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 45 7789999999999999999999999999998632 33444 5898888888887754 3899999999
Q ss_pred EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCE-EEeec-CCeEEEEEcCC
Q 001245 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDART 341 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~-v~S~s-d~tI~lWD~~t 341 (1115)
||+=.+....+.- ....+..|. +.+.-++..++..+ +.|++ |..++-.|+++
T Consensus 211 vr~s~i~~t~~~e----------------~t~rl~~h~----------g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 211 VRVSEILETGYVE----------------NTKRLAPHE----------GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred eeeeeecccccee----------------cceeccccc----------CccceeeecCCCCCcccccccccceeeeeecc
Confidence 9987654321110 001111122 34445555554433 33443 67788888887
Q ss_pred ccEEEEEe---cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecccc-ceEEeccCcEEEEecc-----
Q 001245 342 RELLKVFN---IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAADAVRRVAAK----- 412 (1115)
Q Consensus 342 g~ll~tl~---~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~Gs~d~v~~~~~~----- 412 (1115)
+..-..+. .+... .+.+ .+++..+... ..++|..+...++++.
T Consensus 265 ~~pa~~~~cr~~~~~~------------------~v~L----------~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 265 DVPAEKFVCREADEKE------------------RVGL----------YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred CCccceeeeeccCCcc------------------ceee----------eeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 76543332 01110 0000 1122222221 2334444433333221
Q ss_pred ----c---ccc------cCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC---CC----------CeeEE-eecCCCc--E
Q 001245 413 ----G---GFG------DDNRRTEALTTSIDGM-IWTGGANGLLLQWDP---NG----------NRLQD-FQYLPFA--V 462 (1115)
Q Consensus 413 ----g---~l~------~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~---tG----------~~l~t-l~gH~~~--V 462 (1115)
| .|. ...-.|++++++.++. +.+...|--|.|+.. .| ..+.. ++||.+. |
T Consensus 317 e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV 396 (559)
T KOG1334|consen 317 EENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV 396 (559)
T ss_pred ccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence 1 111 1223588999997765 888888999999965 35 33333 8899874 6
Q ss_pred EEEEec---CCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEecCC--EEEeecCCCceEEeee
Q 001245 463 QCLCTF---GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG--YIFTLANHGGIRGWNV 525 (1115)
Q Consensus 463 ~sla~d---G~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~dg~--~laSgS~DgtIRlWdl 525 (1115)
..+-+- ..+++|||.=|.|.+|+-. +++++-+.|-...|+||.+.+- .|||.|-|..||||.-
T Consensus 397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 666644 4799999999999999987 8999999998889999997665 5899999999999975
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.27 E-value=2.4e-10 Score=132.65 Aligned_cols=265 Identities=15% Similarity=0.148 Sum_probs=176.1
Q ss_pred eeEEEEEe--CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeC
Q 001245 134 FLRTIVCT--EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1115)
Q Consensus 134 ~l~~l~~~--~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~ 211 (1115)
++.+++.. ++||+.+++..+-++|..+|...++ + .+| ...|.|+|++.||++.|||+.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqt-----------------L--KgH-KDtVycVAys~dGkrFASG~a 73 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQP-----------------L--KGH-KDTVYCVAYAKDGKRFASGSA 73 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccc-----------------c--ccc-cceEEEEEEccCCceeccCCC
Confidence 55666665 7799999999999999999988774 2 256 789999999999999999999
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEe
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~ 290 (1115)
|..|.+|+..- +.++. -.|.+.|.||.|+|-.. |+|+|-.. --+|..+.....
T Consensus 74 DK~VI~W~~kl---------EG~Lk-YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~--------------- 127 (1081)
T KOG1538|consen 74 DKSVIIWTSKL---------EGILK-YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVS--------------- 127 (1081)
T ss_pred ceeEEEecccc---------cceee-eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHH---------------
Confidence 99999998542 11222 36999999999999876 88988543 457876542111
Q ss_pred eeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccE-EEEEec--CCceeeEEeccCCCCc
Q 001245 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTREL-LKVFNI--DGQIENRVDMSLLPDF 366 (1115)
Q Consensus 291 ~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~l-l~tl~~--~~~~~~~v~~s~~~~~ 366 (1115)
.|.. +..+.+-+...+|..++-+ .++||.|-+. +|+. .++-.+ +...+.++.++|....
T Consensus 128 --------K~ks--------s~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 128 --------KHKS--------SSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred --------hhhh--------heeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 0110 1222233334455555544 3688888774 4443 333322 2334455555553322
Q ss_pred cccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCC----ceEEEEEcCCCc-EEEEeCCCe
Q 001245 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR----RTEALTTSIDGM-IWTGGANGL 441 (1115)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~----~V~aVa~S~Dg~-laSGS~Dgt 441 (1115)
...+...+.-|. .++.|++ .+|++.+... ...|+.+-++|. ++.|+.|+.
T Consensus 191 G~~di~aV~DW~--------qTLSFy~-----------------LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 191 GRNDILAVADWG--------QTLSFYQ-----------------LSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CccceEEEEecc--------ceeEEEE-----------------ecceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 221111111111 0112211 1244444222 344677667776 789999999
Q ss_pred EEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 442 LLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 442 IklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
++++-..|-++.|+-.-..+|++|+ |.|++++.|+.||||-.+++
T Consensus 246 L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 9999999999999887778999999 89999999999999999985
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=4.3e-10 Score=124.01 Aligned_cols=278 Identities=11% Similarity=0.066 Sum_probs=165.0
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
.| ++-|+++.|+.++++||||+.|..+++|+++..- -....+++... .-|+..|.|++|..... |+||..|++|.
T Consensus 54 ~H-~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 54 EH-TGCINALQFSHNDRFLASGGDDMHGRVWNVDELM--VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hh-ccccceeeeccCCeEEeecCCcceeeeechHHHH--hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 45 8899999999999999999999999999986311 11111333322 23578999999998776 89999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc-
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE- 343 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~- 343 (1115)
+-|+++.+.+-.+ +|.. .-++|..+...|....+++.+ ++-|.+||.+...
T Consensus 131 ~HDiEt~qsi~V~--------------------~~~~-------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 131 KHDIETKQSIYVA--------------------NENN-------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred eeecccceeeeee--------------------cccC-------cccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 9999885443111 1110 003444455555555555554 5789999988654
Q ss_pred EEEEE--ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEEEecc--------
Q 001245 344 LLKVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAK-------- 412 (1115)
Q Consensus 344 ll~tl--~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~-------- 412 (1115)
.+.-+ ...+.....+.|.|... ..+++.+ .+++-+|+-.
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P------------------------------~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETP------------------------------ALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred CCceeeecCCCccceeeeecCCCc------------------------------eeEEeccccCCCCceeeccccchHHh
Confidence 11111 11111112333333211 1111111 1223233221
Q ss_pred -cccccCCC---ceEEEEEcCCCc-EEEEeCCCeEEEEcCCCCeeEEeec-CC-------CcEEEEEe-cCCEEEeeecc
Q 001245 413 -GGFGDDNR---RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQY-LP-------FAVQCLCT-FGSQIWVGYMN 478 (1115)
Q Consensus 413 -g~l~~h~~---~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l~tl~g-H~-------~~V~sla~-dG~~LaSGs~D 478 (1115)
+.+.+-.. .-..+.|++.|. +.+--.-..=.++|+-.+.+-.|+. |. ..+.++++ +...+++||.+
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~ 313 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDH 313 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcc
Confidence 11111111 123456777775 4443333344567774333333322 22 13445553 55679999999
Q ss_pred cEEEEEeCC------C-----c-------------cccccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 479 GIVQVLDLE------G-----N-------------LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 479 GtIrlWD~~------G-----~-------------ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
-.|.+|-+- | . .+..|+||...++.|.| ...+|+|.+-.+.||||.-
T Consensus 314 ~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 314 WGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 999999741 2 1 24578999999999987 4567889999999999974
No 186
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.23 E-value=9.7e-11 Score=127.50 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=81.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
|.-|-|||-|+..+++... ..+| ...|+.+.+-|+ .++|.|||+|.+||+|++.+..|
T Consensus 112 G~~GvIrVid~~~~~~~~~-------------------~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C- 170 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKN-------------------YRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC- 170 (385)
T ss_pred cceeEEEEEecchhhhccc-------------------eecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-
Confidence 5677999999998887653 2356 678999999986 58999999999999999997543
Q ss_pred CCCCCcceEEe---ecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 227 SDDGFGEVLSW---QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 227 ~~~~~~~~~~l---~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
+..| .||++.|.+|.|+.+|. |+|++.|.+|++|++.+
T Consensus 171 -------v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 171 -------VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred -------EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 4444 78999999999999997 89999999999999985
No 187
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=3.2e-10 Score=135.34 Aligned_cols=229 Identities=13% Similarity=0.043 Sum_probs=139.0
Q ss_pred CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCCCC
Q 001245 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG---RIMCWKMNARLLD 226 (1115)
Q Consensus 150 D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dg---tIrlWdl~~~~~~ 226 (1115)
+..|.+||.+... .+. +. .+ ...+.+.+|+|||+.|+..+.++ .|++||+.++..
T Consensus 183 ~~~i~i~d~dg~~-~~~-----------------lt--~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~- 240 (429)
T PRK01742 183 PYEVRVADYDGFN-QFI-----------------VN--RS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR- 240 (429)
T ss_pred eEEEEEECCCCCC-ceE-----------------ec--cC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-
Confidence 5699999986443 221 11 22 45788999999999999988653 799999986421
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCc-EEE-EeCCCcEEEE--eCCCcceeeccCCCcceeEEEEeeeeeeeecccce
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWS-GSEGGGIKIW--PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~S-gS~DgtIrvW--dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~ 302 (1115)
+.+..+.+|. .+++|+|||+ |+. .+.||.++|| |++++... . +..+.
T Consensus 241 -----~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~-------------------lt~~~- 291 (429)
T PRK01742 241 -----KVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-Q-------------------LTSGA- 291 (429)
T ss_pred -----EEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-e-------------------eccCC-
Confidence 1223344553 4689999997 654 4578887777 44443221 0 11111
Q ss_pred ecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecC
Q 001245 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (1115)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~ 380 (1115)
..+....+++++..++.++ ++..+||++..... .
T Consensus 292 ---------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---------~-------------------------- 327 (429)
T PRK01742 292 ---------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---------G-------------------------- 327 (429)
T ss_pred ---------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---------C--------------------------
Confidence 1223455667777665443 35667776431100 0
Q ss_pred CCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC
Q 001245 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL 458 (1115)
Q Consensus 381 ~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH 458 (1115)
..++ .+.. ...+++|||. |+.++.++. .+||+ +|+.......+
T Consensus 328 -------------------------~~~l-------~~~~--~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~ 372 (429)
T PRK01742 328 -------------------------ASLV-------GGRG--YSAQISADGKTLVMINGDNV-VKQDLTSGSTEVLSSTF 372 (429)
T ss_pred -------------------------eEEe-------cCCC--CCccCCCCCCEEEEEcCCCE-EEEECCCCCeEEecCCC
Confidence 0000 0000 1245788887 666666664 45998 67654333332
Q ss_pred CCcEEEEEecCCEEEeeecccEEEEEe---CCCccccccccccCCEEEEEecC
Q 001245 459 PFAVQCLCTFGSQIWVGYMNGIVQVLD---LEGNLLGGWVAHSSPVIKMAVGA 508 (1115)
Q Consensus 459 ~~~V~sla~dG~~LaSGs~DGtIrlWD---~~G~ll~~l~gH~~~V~sva~dg 508 (1115)
...-.+++|||++|+.++.+|.+++|+ .+|+.++.+.+|.+.+...++.+
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 222224558999999999999888776 46889999999988777666543
No 188
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.22 E-value=6.4e-10 Score=125.63 Aligned_cols=166 Identities=14% Similarity=0.217 Sum_probs=104.8
Q ss_pred eeEEEEEe---CCeEEEeCC--CCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEE
Q 001245 134 FLRTIVCT---EEQLWAGGE--NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVW 207 (1115)
Q Consensus 134 ~l~~l~~~---~~~l~ag~D--~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~La 207 (1115)
.+-.++.| +..++|.+| |.|-+||+.+.... ++ -.+....| +++|.||.|+|. -..|.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------------~d-~v~~f~~h-s~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------------KD-GVYLFTPH-SGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc--------------cC-ceEEeccC-CccccceEecCCChhhee
Confidence 33455665 446676544 49999999522211 11 11233456 889999999995 56789
Q ss_pred EEeCCCeEEEEECCCCCCC------C-------------------C------------CCCcceEEeecCCCCEEEEEEe
Q 001245 208 SGHRDGRIMCWKMNARLLD------S-------------------D------------DGFGEVLSWQAHRGPVLSLCIS 250 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~------~-------------------~------------~~~~~~~~l~GH~~~V~sVafS 250 (1115)
|.|+||+||+=|++++... + + ....+...|+-|...|++|++.
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999999999998764310 0 0 0001111234477799999999
Q ss_pred CCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe
Q 001245 251 SYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (1115)
Q Consensus 251 pdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S 328 (1115)
|-.. |+|||.|+|.||||+......-+ .++....|. -.|....++|.+..|++
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------p~lst~~Hr----------rsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS---------------PFLSTLPHR----------RSVNSAYFSPSGGTLLT 386 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC---------------cceeccccc----------ceeeeeEEcCCCCceEe
Confidence 9763 79999999999999976221100 011122333 23445556666666654
Q ss_pred -ecCCeEEEEEcC
Q 001245 329 -AGFLSFALWDAR 340 (1115)
Q Consensus 329 -~sd~tI~lWD~~ 340 (1115)
+.|.+|+|||..
T Consensus 387 T~~D~~IRv~dss 399 (498)
T KOG4328|consen 387 TCQDNEIRVFDSS 399 (498)
T ss_pred eccCCceEEeecc
Confidence 568999999973
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.19 E-value=3.1e-09 Score=128.06 Aligned_cols=280 Identities=14% Similarity=0.112 Sum_probs=162.7
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
.+..+-|||+.+...+. .. .+-.++|+|+.|.| +..+||.|.++|.|-+||+..+..
T Consensus 220 ~~~~~~vW~~~~p~~Pe-------------------~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~-- 277 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNTPE-------------------LV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSD-- 277 (555)
T ss_pred CCceEEEEecCCCCCce-------------------EE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCC--
Confidence 44589999998763332 11 11157899999998 588999999999999999986321
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCC---cEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceec
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYG---DLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG---~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~ 304 (1115)
.........--.|+.+|+.+.+..+- .++|+|.||.|+.|+++-...-... ..... .-|.
T Consensus 278 ~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~-----~~~~~---------~~~~--- 340 (555)
T KOG1587|consen 278 TPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG-----LLLES---------KKHK--- 340 (555)
T ss_pred CCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh-----ccccc---------cccc---
Confidence 00111112224589999999987542 3899999999999987653221000 00000 0000
Q ss_pred ceeeeecCCeEEEEEeCCCC-EEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCC
Q 001245 305 GFSSILTSDIKNLLSDHSRA-KVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (1115)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~-~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (1115)
+........+.++.+-+... ..+-+ ...|.+.+ +.+++
T Consensus 341 ~~~~~~~~~~t~~~F~~~~p~~FiVG---------Te~G~v~~--------------------------------~~r~g 379 (555)
T KOG1587|consen 341 GQQSSKAVGATSLKFEPTDPNHFIVG---------TEEGKVYK--------------------------------GCRKG 379 (555)
T ss_pred ccccccccceeeEeeccCCCceEEEE---------cCCcEEEE--------------------------------EeccC
Confidence 00000001112222211100 00000 01111111 00110
Q ss_pred ccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-E-EEEeCCCeEEEEcC--CCCeeEEeecCC
Q 001245 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWDP--NGNRLQDFQYLP 459 (1115)
Q Consensus 384 ~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-l-aSGS~DgtIklWD~--tG~~l~tl~gH~ 459 (1115)
... +. .....+ -..+..|.+.|.++.++|=+. + +|++ |-+||||.- ...++-.+..+.
T Consensus 380 ~~~---~~----~~~~~~----------~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 380 YTP---AP----EVSYKG----------HSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP 441 (555)
T ss_pred Ccc---cc----cccccc----------cccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc
Confidence 000 00 000000 012345667888888777654 4 4444 999999987 456777788888
Q ss_pred CcEEEEEe---cCCEEEeeecccEEEEEeCC---CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 460 FAVQCLCT---FGSQIWVGYMNGIVQVLDLE---GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 460 ~~V~sla~---dG~~LaSGs~DGtIrlWD~~---G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
..|++++. --..+|++..||+|.+||+. -..+.+..-+......+.+ .|+.|+.|..-|+|.+|++.
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 88999993 35689999999999999974 2344444444333344443 58999999999999999984
No 190
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.6e-10 Score=142.61 Aligned_cols=231 Identities=19% Similarity=0.253 Sum_probs=153.0
Q ss_pred eEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCC-EEEEEeCCCeEEEEEC
Q 001245 144 QLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 144 ~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~-~LaSGS~DgtIrlWdl 220 (1115)
.|+|| .||.|-+||.+.-.... +...-.+...| +++|+.+.|++... +||||+.||.|.+||+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~-------------~~~~la~~~~h-~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANA-------------SEEVLATKSKH-TGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred ceeeccccCCceEEecchhhccCc-------------chHHHhhhccc-CCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 46663 79999999987531110 11111122467 88999999999755 9999999999999999
Q ss_pred CCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeec
Q 001245 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~ 298 (1115)
..-. .++... -+.-.+-|.+|+++..-+ |+|++.+|++-|||+...+..+.++.....+
T Consensus 147 nn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~------------- 207 (1049)
T KOG0307|consen 147 NKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM------------- 207 (1049)
T ss_pred CCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc-------------
Confidence 7411 111110 123356799999987544 7899999999999998765554433221110
Q ss_pred ccceecceeeeecCCeEEEEEeCCC-CEEEeec-C---CeEEEEEcCCcc-EEEEEecCCceeeEEeccCCCCccccccc
Q 001245 299 SHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-F---LSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1115)
Q Consensus 299 ~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~s-d---~tI~lWD~~tg~-ll~tl~~~~~~~~~v~~s~~~~~~~~~~~ 372 (1115)
.+..++..++. ..|+.++ | -.|.+||+|.-. .++
T Consensus 208 --------------~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-------------------------- 247 (1049)
T KOG0307|consen 208 --------------HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-------------------------- 247 (1049)
T ss_pred --------------ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh--------------------------
Confidence 11122222221 1222222 2 368999976311 111
Q ss_pred eEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-c-EEEEeCCCeEEEEcC-CC
Q 001245 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NG 449 (1115)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~-laSGS~DgtIklWD~-tG 449 (1115)
.+.+|...|.++.+.+.+ . ++|.+.|+.|.+|+. +|
T Consensus 248 -----------------------------------------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 248 -----------------------------------------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred -----------------------------------------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 134555566666655433 4 789999999999999 89
Q ss_pred CeeEEeecCCCcEEEEEe---cCCEEEeeecccEEEEEeCCC
Q 001245 450 NRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 450 ~~l~tl~gH~~~V~sla~---dG~~LaSGs~DGtIrlWD~~G 488 (1115)
+.+.++-...+++..+.+ +-..++++|.||.|.|+.+.|
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999988889988873 457999999999999999763
No 191
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.15 E-value=5.7e-10 Score=126.47 Aligned_cols=197 Identities=14% Similarity=0.176 Sum_probs=140.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
|..+.|++||+....+.+. . ..| .+.|+||.+.-...+|||++..|.|.+-.+.++.-
T Consensus 98 G~~~~Vkiwdl~~kl~hr~------------------l-kdh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-- 155 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLIHRF------------------L-KDH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-- 155 (673)
T ss_pred CcCceeeehhhHHHHHhhh------------------c-cCC-cceeEEEEecCCcceeEEeccCCcEEEEecccCcc--
Confidence 5678999999984444432 1 145 78999999999999999999999999999987421
Q ss_pred CCCCcceEEee-cCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceec
Q 001245 228 DDGFGEVLSWQ-AHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1115)
Q Consensus 228 ~~~~~~~~~l~-GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~ 304 (1115)
..+|. +....|.-|.|++..+ |.++|.+|+|.|||+....+.... ...|.
T Consensus 156 ------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~------------------~~~Hs--- 208 (673)
T KOG4378|consen 156 ------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA------------------SEAHS--- 208 (673)
T ss_pred ------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch------------------hhhcc---
Confidence 22342 2244677999999876 568999999999999876544221 12343
Q ss_pred ceeeeecCCeEEEEEeCCCCE-EEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCC
Q 001245 305 GFSSILTSDIKNLLSDHSRAK-VWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1115)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~-v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~ 382 (1115)
.+...+++++.+.. +++.+ |+.|.+||.+..+....+..
T Consensus 209 -------AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------------------------------- 249 (673)
T KOG4378|consen 209 -------APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-------------------------------- 249 (673)
T ss_pred -------CCcCcceecCCccceEEEecccceEEEeecccccccceeee--------------------------------
Confidence 23334445554443 44555 78899999875444332210
Q ss_pred CccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCC--CCeeEEeecCC
Q 001245 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN--GNRLQDFQYLP 459 (1115)
Q Consensus 383 ~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~t--G~~l~tl~gH~ 459 (1115)
.....+|+|+++|. |+.|...|.|..||+. -.++.++..|.
T Consensus 250 ------------------------------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 250 ------------------------------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred ------------------------------------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 11345688999998 7899999999999994 46899999999
Q ss_pred CcEEEEEec
Q 001245 460 FAVQCLCTF 468 (1115)
Q Consensus 460 ~~V~sla~d 468 (1115)
.+|++|++.
T Consensus 294 ~sVt~vafq 302 (673)
T KOG4378|consen 294 ASVTRVAFQ 302 (673)
T ss_pred cceeEEEee
Confidence 999999953
No 192
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.3e-09 Score=130.24 Aligned_cols=209 Identities=11% Similarity=-0.027 Sum_probs=128.1
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCC---CcEEEEeCCCcceeeccCCCccee
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~D---gtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+.+.+|.+||.++. ..+.+..|...|.+.+|||||+ |+.+|.+ .+|++||+.+++....
T Consensus 181 ~~~~~i~i~d~dg~---------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-------- 243 (429)
T PRK01742 181 SQPYEVRVADYDGF---------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-------- 243 (429)
T ss_pred CceEEEEEECCCCC---------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE--------
Confidence 34679999999862 2456778999999999999997 7666543 4799999987643210
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEE--EEEcCCccEEEEEecCCceeeEEecc
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFA--LWDARTRELLKVFNIDGQIENRVDMS 361 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~--lWD~~tg~ll~tl~~~~~~~~~v~~s 361 (1115)
..+.++. ...++++++..|+.+. ++.+. +||+.+++..+..
T Consensus 244 ---------~~~~g~~-------------~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt------------- 288 (429)
T PRK01742 244 ---------ASFRGHN-------------GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT------------- 288 (429)
T ss_pred ---------ecCCCcc-------------CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec-------------
Confidence 0011121 1345677777665543 34444 4465554432110
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEE-EeCC
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT-GGAN 439 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laS-GS~D 439 (1115)
.+...+...+++|||. |+. +..+
T Consensus 289 -------------------------------------------------------~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 289 -------------------------------------------------------SGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred -------------------------------------------------------cCCCCcCCEEECCCCCEEEEEECCC
Confidence 0111233467889987 554 4457
Q ss_pred CeEEEEcC--CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEecCCEEEeecC
Q 001245 440 GLLLQWDP--NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLAN 516 (1115)
Q Consensus 440 gtIklWD~--tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~dg~~laSgS~ 516 (1115)
+..+||++ .+...+.+ +|.....++.|||++|+.++.++. .+||+. |+.......+...-.+.++||++|+.++.
T Consensus 314 g~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 314 GSPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGDNV-VKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCCCE-EEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc
Confidence 88899986 34433333 343321234489999998888765 459986 54322112222222235579999999999
Q ss_pred CCceEEeeecC
Q 001245 517 HGGIRGWNVTS 527 (1115)
Q Consensus 517 DgtIRlWdl~~ 527 (1115)
++.+++|.+..
T Consensus 392 ~g~~~~l~~~~ 402 (429)
T PRK01742 392 QGLGKVLQLVS 402 (429)
T ss_pred CCCceEEEEEE
Confidence 99999998753
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.1e-08 Score=123.72 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=163.2
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
--+..+-+|++.+.....+ .|.- ..-| +-...|.+++|.++++|+|..||.|.+|.--+...
T Consensus 178 ~~~~~~~~~~v~~~~~~~~-------~~~~--------~~~H-tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-- 239 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTS-------SRDI--------TVHH-TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-- 239 (792)
T ss_pred EEeeeEEEEEecccceeec-------cchh--------hhhh-cccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence 3566778888887551110 1111 1123 44589999999999999999999999997432110
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceee-----------ccCCCcceeEEEEeeee-e
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKAL-----------SLKPEERHTAALIVERS-Y 294 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l-----------~~~~~~~~~~a~~~~~~-~ 294 (1115)
.-.....|.-|.+.|++++|+++|. |+||+..|.+-+|.++|+++.+ ..+++.. ..++..+.. +
T Consensus 240 --~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI 316 (792)
T KOG1963|consen 240 --DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQI 316 (792)
T ss_pred --ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCC-eEEEEecCceE
Confidence 0122456777999999999999997 8999999999999999966421 1122322 222222222 2
Q ss_pred eeecc-----cceecceeee-------ecCCeEEEEEeC-CCCEEEeecCCeEEEEEcCCccEEEEEec------CCc--
Q 001245 295 IDLRS-----HLSVNGFSSI-------LTSDIKNLLSDH-SRAKVWSAGFLSFALWDARTRELLKVFNI------DGQ-- 353 (1115)
Q Consensus 295 ~~l~~-----h~~~~~~~~~-------~s~~v~~las~~-~~~~v~S~sd~tI~lWD~~tg~ll~tl~~------~~~-- 353 (1115)
..+.. ..++.|.... +.+-...+++++ .+..+..+..+.|.+||+.+.+.+..+.. ++.
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 22211 1122232211 122234555666 33344455568899999998877655421 111
Q ss_pred --e-eeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE-cC
Q 001245 354 --I-ENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT-SI 429 (1115)
Q Consensus 354 --~-~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~-S~ 429 (1115)
+ ++++..+..+......+. ++ ...........+.||+...+ ..+..+ .++ .-..|.....+.++ ++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~--~~-d~~~~~~~e~~LKFW~~n~~-----~kt~~L-~T~-I~~PH~~~~vat~~~~~ 466 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEA--RI-DKFNFFDGEVSLKFWQYNPN-----SKTFIL-NTK-INNPHGNAFVATIFLNP 466 (792)
T ss_pred eEEeeeeehhhccceEEEEeee--ee-hhhhccCceEEEEEEEEcCC-----cceeEE-EEE-EecCCCceeEEEEEecC
Confidence 1 122222222211111100 00 00000000112233322100 000000 000 01123333333332 22
Q ss_pred -CC-cEEEEeCCCeEEEEcCCC-----------CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 430 -DG-MIWTGGANGLLLQWDPNG-----------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 430 -Dg-~laSGS~DgtIklWD~tG-----------~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.. +.+|++.||.+|+|-.++ .|...-..|..++++.+ -||+.|++| .|++|.+||..
T Consensus 467 ~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~ 538 (792)
T KOG1963|consen 467 TRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYD 538 (792)
T ss_pred cccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCC
Confidence 22 578999999999997632 23322224777888888 478776665 56689999965
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=6.2e-09 Score=126.85 Aligned_cols=270 Identities=20% Similarity=0.277 Sum_probs=155.1
Q ss_pred CCeEEEeCCC-CEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 142 EEQLWAGGEN-GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 142 ~~~l~ag~D~-tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
+.+++++.|+ .|+|||-+.+.....+ +..+.|+.. + .-+++.=..|..+|.+||.||.||+|+-
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F----------~n~~~~~t~-V----s~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGF----------DNGAFPDTR-V----SDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccc----------cCCCCCCCc-c----ceeeeecccchhheeeeccCceEEEecc
Confidence 6677777766 9999999988876531 222222221 1 1233443567889999999999999984
Q ss_pred CCCCCCCCCCCcceEEee---cC----CCCEEEEEEe-CCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeee
Q 001245 221 NARLLDSDDGFGEVLSWQ---AH----RGPVLSLCIS-SYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~---GH----~~~V~sVafS-pdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~ 292 (1115)
-.. .-...+.+.-|. ++ ++.=.-+.+- -.|.|+++++=..|||||.+.-.+...+
T Consensus 1141 y~~---~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di-------------- 1203 (1387)
T KOG1517|consen 1141 YAD---KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI-------------- 1203 (1387)
T ss_pred ccc---ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec--------------
Confidence 320 001123333333 33 1111111222 2356777777899999999763322110
Q ss_pred eeeeecccceecceeeeecCCeEEEEEeC-CCCEEEe-ecCCeEEEEEcCCcc---EEEEEecCCceeeEEeccCCCCcc
Q 001245 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWS-AGFLSFALWDARTRE---LLKVFNIDGQIENRVDMSLLPDFA 367 (1115)
Q Consensus 293 ~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S-~sd~tI~lWD~~tg~---ll~tl~~~~~~~~~v~~s~~~~~~ 367 (1115)
... .+.-++.|..+- .+..++. ..|+.+++||.+... .+.+...|....
T Consensus 1204 ---P~~-----------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~------------ 1257 (1387)
T KOG1517|consen 1204 ---PYG-----------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE------------ 1257 (1387)
T ss_pred ---ccC-----------CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc------------
Confidence 000 012233333322 2344443 458999999987543 233333333220
Q ss_pred ccccceEEEEecCCCCccceeeeeeccc-cceEEeccCc-EEEEecccccc-------cC--CC-ceEEEEEcCCCc-EE
Q 001245 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRS-RNAIMGAADA-VRRVAAKGGFG-------DD--NR-RTEALTTSIDGM-IW 434 (1115)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~f~~~~-~~~~~Gs~d~-v~~~~~~g~l~-------~h--~~-~V~aVa~S~Dg~-la 434 (1115)
....+.+-..+ ..+++|+.+| |..|+...... .| .+ .++++.+.+..- +|
T Consensus 1258 -----------------~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1258 -----------------PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred -----------------cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeee
Confidence 01111122212 1356677665 45555433111 11 13 377888877765 78
Q ss_pred EEeCCCeEEEEcCCCCeeEEeecCC-------CcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 435 TGGANGLLLQWDPNGNRLQDFQYLP-------FAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 435 SGS~DgtIklWD~tG~~l~tl~gH~-------~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+|+. +.|+|||+.|+.+..++.+. .++.|++ |---+||+|+.|.+|.|+-.+
T Consensus 1321 sGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1321 SGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 8988 99999999999888877543 3577888 456789999999999999865
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=8.9e-10 Score=123.88 Aligned_cols=199 Identities=19% Similarity=0.205 Sum_probs=128.8
Q ss_pred EEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC
Q 001245 245 LSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323 (1115)
Q Consensus 245 ~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~ 323 (1115)
.+|||+.+|. |++|+.||++|||++......+. ...|. .+|++|.+++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~-------------------e~~~~----------~eV~DL~FS~dg 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE-------------------EIAHH----------AEVKDLDFSPDG 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh-------------------hHhhc----------CccccceeCCCC
Confidence 7899999986 79999999999999866443321 11233 689999999999
Q ss_pred CEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc
Q 001245 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1115)
Q Consensus 324 ~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~ 403 (1115)
..|++.+....+|||+++|..+....+.+... .-...-|..+ .++
T Consensus 199 k~lasig~d~~~VW~~~~g~~~a~~t~~~k~~-----------------------------~~~~cRF~~d------~~~ 243 (398)
T KOG0771|consen 199 KFLASIGADSARVWSVNTGAALARKTPFSKDE-----------------------------MFSSCRFSVD------NAQ 243 (398)
T ss_pred cEEEEecCCceEEEEeccCchhhhcCCcccch-----------------------------hhhhceeccc------CCC
Confidence 99999876699999999997765543211110 0000111111 001
Q ss_pred CcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcCC--CCeeEEeecCCCcEEEEE--ecCCEEEeeeccc
Q 001245 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG 479 (1115)
Q Consensus 404 d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~t--G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DG 479 (1115)
+.+++.+ . ..|.+.+.. -.+.+|+-+ ++.-+.+.. ...|.|++ .||+++|.|+.||
T Consensus 244 ~~l~laa--------------~-~~~~~~v~~----~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 244 ETLRLAA--------------S-QFPGGGVRL----CDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred ceEEEEE--------------e-cCCCCceeE----EEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEeccCC
Confidence 1111111 0 011111111 124445442 122222222 34688888 6899999999999
Q ss_pred EEEEEeCC--CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 480 IVQVLDLE--GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 480 tIrlWD~~--G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.|-|.++. ..+...-++|...|+.|+| |.+++++.|.|.++++-.+..
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999986 2344556799999999985 778999999999999988754
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.08 E-value=3.5e-09 Score=113.72 Aligned_cols=231 Identities=14% Similarity=0.081 Sum_probs=145.3
Q ss_pred CCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCC-------CcEEEEeCCCcceeeccCCC
Q 001245 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEG-------GGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 211 ~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~D-------gtIrvWdl~t~~~~l~~~~~ 281 (1115)
.|..|.+-+++.+.. .-....|.-|.+.|..|+-+|..+ |+|+-.| -.+-||.+......
T Consensus 38 ~dNqVhll~~d~e~s-----~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~------ 106 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGS-----ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ------ 106 (370)
T ss_pred CcceeEEEEecCccc-----hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc------
Confidence 355566666553211 012345677889999999998764 4554332 25778987542111
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEE-EEEecCCceeeEEec
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELL-KVFNIDGQIENRVDM 360 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll-~tl~~~~~~~~~v~~ 360 (1115)
. .+..+. .+...-...-+.+.|+..-|++.++++-.+..|.+|++..+.-+ ..+...+..
T Consensus 107 ---S-------~~~tlE---~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~------ 167 (370)
T KOG1007|consen 107 ---S-------NSSTLE---CVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA------ 167 (370)
T ss_pred ---c-------ccchhh---HhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc------
Confidence 0 000000 00000000125788999999999999999999999998765431 111000000
Q ss_pred cCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC--CCcEEEEeC
Q 001245 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGGA 438 (1115)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~--Dg~laSGS~ 438 (1115)
. +.....+-++|| ||..+....
T Consensus 168 ----------------------e----------------------------------~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 168 ----------------------E----------------------------------MRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred ----------------------c----------------------------------ccceecccccCCCCccceEEEeC
Confidence 0 000001112233 444333456
Q ss_pred CCeEEEEcC-CCCeeEEe-ecCCCcEEEEEe--c-CCEEEeeecccEEEEEeCC--CccccccccccCCEEEEEe---cC
Q 001245 439 NGLLLQWDP-NGNRLQDF-QYLPFAVQCLCT--F-GSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GA 508 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl-~gH~~~V~sla~--d-G~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~sva~---dg 508 (1115)
|++++.||+ +-.+.-.+ .+|...|..+.+ . --+|++++.||.|++||.. ...++++.+|+.+|++|.+ ..
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 899999999 55544443 468888998883 3 3489999999999999986 5689999999999999986 56
Q ss_pred CEEEeecCCCceEEeeecC
Q 001245 509 GYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 509 ~~laSgS~DgtIRlWdl~~ 527 (1115)
++|.|+|.|..|-+|...+
T Consensus 272 qLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASS 290 (370)
T ss_pred eEEEecCCCceeEEEeccc
Confidence 8999999999999998754
No 197
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.07 E-value=2.8e-09 Score=123.41 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=111.4
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
|+-|-|-++++...-.+- +...|-. .. ...|+.+.++| |...||.|..||.|++|.+..+.+
T Consensus 600 g~gG~iai~el~~PGrLP-------------Dgv~p~l--~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl- 662 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLP-------------DGVMPGL--FN-GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL- 662 (1012)
T ss_pred CCCceEEEEEcCCCCCCC-------------ccccccc--cc-CceeeecccCCCChHHeeecccCceEEEEEeccCCC-
Confidence 567788888876432211 1222222 12 45789999998 788999999999999999976432
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceec
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~ 304 (1115)
..+.-.....+++|...|++|.|.|=.. |+++|.|-||++||+.+++.. ..+.+|.
T Consensus 663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~-------------------~~l~gHt--- 720 (1012)
T KOG1445|consen 663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY-------------------SRLVGHT--- 720 (1012)
T ss_pred CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh-------------------heeccCc---
Confidence 1122233457899999999999999643 789999999999999886432 2345676
Q ss_pred ceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
+.+..+|.+++|+++++.. |++|+++..++++
T Consensus 721 -------dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 721 -------DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred -------CceeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence 6788899999999999864 8999999988765
No 198
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.06 E-value=1e-08 Score=114.79 Aligned_cols=115 Identities=19% Similarity=0.336 Sum_probs=85.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCcee--eeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKE--SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL- 224 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~--s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~- 224 (1115)
|.|+.||+|-+..+...+. + ....+.. +.| ...|+++.|+|+|.+||||+.+|.|.+|....-.
T Consensus 33 G~D~~iriW~v~r~~~~~~-----------~-~~V~y~s~Ls~H-~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 33 GGDKDIRIWKVNRSEPGGG-----------D-MKVEYLSSLSRH-TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred cCccceeeeeeeecCCCCC-----------c-eeEEEeecccCC-cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 7899999999887765441 0 1111111 245 7899999999999999999999999999876100
Q ss_pred --CCC-----CCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCccee
Q 001245 225 --LDS-----DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 225 --~~~-----~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~ 275 (1115)
+++ .........++||..-|..++++|++. +++||.|.++++||+..+...
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 001 000112346789999999999999998 789999999999999887544
No 199
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=1.8e-08 Score=123.63 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=98.0
Q ss_pred cccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeE-EeecCCCcEEEEEecCCEEEeeecccEEEEEeCCCccc
Q 001245 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLL 491 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~-tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~G~ll 491 (1115)
+.+|.+.+-++.++.||. ++|.|.|+++|+|++ +++.+. +.-+|+..|+.++....+|++++.|.|.++|+.+|..+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l 250 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQL 250 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEeccccee
Confidence 567778888899999987 899999999999999 777666 77899999999996555999999999999999999888
Q ss_pred cccccccC-CEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 492 GGWVAHSS-PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 492 ~~l~gH~~-~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
..+.+|.+ .|++++. +.-.++|++.|+++|+|++..
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 89999986 7888875 344678999999999999864
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.05 E-value=4.1e-08 Score=112.87 Aligned_cols=205 Identities=10% Similarity=0.133 Sum_probs=121.2
Q ss_pred ceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEEeC
Q 001245 193 SVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPW 269 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~-DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvWdl 269 (1115)
.+.-++++|+|+.|++++. ++.|.+|+++.. +...+....+.++ ....+++|+|+|+ | ++...+++|++||+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~----g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKD----GIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCC----CCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 3457999999999998875 889999999741 1111222233333 3457789999997 5 46667899999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCC--ccE-
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART--REL- 344 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~t--g~l- 344 (1115)
++.... . ...... ... . .....+.+++++++..++.+. +++|.+||+.. +++
T Consensus 156 ~~~g~l-~--~~~~~~---------~~~--~---------~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 156 SDDGHL-V--AQEPAE---------VTT--V---------EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred CCCCcc-c--ccCCCc---------eec--C---------CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 763211 0 000000 000 0 001234677888888887664 58899999863 332
Q ss_pred -EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 345 -LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 345 -l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
++.+.. .+ . .+. +.....
T Consensus 213 ~~~~~~~----------~p-------------------------------~-------------------~~~-~~~~~~ 231 (330)
T PRK11028 213 CVQTLDM----------MP-------------------------------A-------------------DFS-DTRWAA 231 (330)
T ss_pred EEEEEec----------CC-------------------------------C-------------------cCC-CCccce
Confidence 111100 00 0 000 001223
Q ss_pred EEEEcCCCc-EEEEe-CCCeEEEEcC--CCCe---eEEeecCCCcEEE--EEecCCEEEeeec-ccEEEEEeCC
Q 001245 424 ALTTSIDGM-IWTGG-ANGLLLQWDP--NGNR---LQDFQYLPFAVQC--LCTFGSQIWVGYM-NGIVQVLDLE 487 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS-~DgtIklWD~--tG~~---l~tl~gH~~~V~s--la~dG~~LaSGs~-DGtIrlWD~~ 487 (1115)
.++++|||+ ++++. .+++|.+|++ ++.. ++...... .... +.+||++|+++.. +++|.+|+++
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~-~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET-QPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc-cCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 577889987 66654 4789999998 3332 23222211 1223 3389999998875 8999999864
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.04 E-value=1.4e-08 Score=125.68 Aligned_cols=249 Identities=15% Similarity=0.221 Sum_probs=147.9
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
.+.|..++.++. +.+++|||.|||||+|++..-.. .....+...++.--...|.++.+.+.|. +|-|+.||.|++-+
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~-~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG-EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhc-CcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence 556777777654 69999999999999999753111 1111233445544467899999999887 88789999999999
Q ss_pred CCCc--ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeE-EEEEeC-CCC-EE-EeecCCeEEEEEcCCc
Q 001245 269 WEAI--EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIK-NLLSDH-SRA-KV-WSAGFLSFALWDARTR 342 (1115)
Q Consensus 269 l~t~--~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~-~las~~-~~~-~v-~S~sd~tI~lWD~~tg 342 (1115)
++-. .+.. .... |. ..+... +.+. +.++.. ... .| ++.....|..||+++.
T Consensus 1127 id~~~~~~~~--------~~~~---ri-~n~~~~-----------g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1127 IDHYNVSKRV--------ATQV---RI-PNLKKD-----------GVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred ccccccccce--------eeee---ec-ccccCC-----------CceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 8652 1110 0000 00 011000 1111 111111 111 22 2222356777886643
Q ss_pred cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCce
Q 001245 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1115)
Q Consensus 343 ~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V 422 (1115)
..+.+++ +....+-|
T Consensus 1184 ~~~w~lk-----------------------------------------------------------------~~~~hG~v 1198 (1431)
T KOG1240|consen 1184 HDAWRLK-----------------------------------------------------------------NQLRHGLV 1198 (1431)
T ss_pred hhHHhhh-----------------------------------------------------------------cCccccce
Confidence 3222211 11122457
Q ss_pred EEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEee-cCCCcEEEEE--e-cC--CEEEeee--cccEEEEEeCC-Cccc
Q 001245 423 EALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLC--T-FG--SQIWVGY--MNGIVQVLDLE-GNLL 491 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~-gH~~~V~sla--~-dG--~~LaSGs--~DGtIrlWD~~-G~ll 491 (1115)
.+++++|.+. +++|..-|.+-+||+ =+.++..+. .|..+|.-|+ + -+ ...++++ ..+.|.+|+.+ |.+.
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 7888888887 689999999999999 477776654 3446777666 2 23 5666655 46789999987 5444
Q ss_pred cccccc--------cCC------------EEE-EEecCCEEEeecCCCceEEeeecCC
Q 001245 492 GGWVAH--------SSP------------VIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 492 ~~l~gH--------~~~------------V~s-va~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
+.+..- ..+ +.+ +.-.+..+.+|+.|..||.||.+.|
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 443322 111 111 1113457889999999999998775
No 202
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=3.4e-08 Score=118.06 Aligned_cols=209 Identities=10% Similarity=0.016 Sum_probs=123.6
Q ss_pred CCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EE-EEeCCC--c
Q 001245 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~---DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~-SgS~Dg--t 263 (1115)
...+.+.+|||||+.||..+. +..|.+|++.++. ...+....+.+.+++|||||+ |+ +.+.+| .
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---------~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---------eEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence 457889999999999986553 4579999998642 222222333455789999997 64 555555 4
Q ss_pred EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC--CeEEEE--Ec
Q 001245 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALW--DA 339 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd--~tI~lW--D~ 339 (1115)
|.+||+++++... ++. ++ ..+....+++++..|+..++ +...|| |+
T Consensus 269 I~~~d~~tg~~~~-lt~------------------~~-----------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 269 LYVMDLASGQIRQ-VTD------------------GR-----------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EEEEECCCCCEEE-ccC------------------CC-----------CCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 8888998754321 100 00 11223455666666654433 233333 54
Q ss_pred CCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC
Q 001245 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1115)
Q Consensus 340 ~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~ 419 (1115)
.+++..+.. . ..
T Consensus 319 ~~g~~~~lt-~-------------------------------------------------------------------~~ 330 (429)
T PRK03629 319 NGGAPQRIT-W-------------------------------------------------------------------EG 330 (429)
T ss_pred CCCCeEEee-c-------------------------------------------------------------------CC
Confidence 444321110 0 00
Q ss_pred CceEEEEEcCCCc-EEEEeC-C--CeEEEEcC-CCCeeEEeec-CCCcEEEEEecCCEEEeeecccE---EEEEeCCCcc
Q 001245 420 RRTEALTTSIDGM-IWTGGA-N--GLLLQWDP-NGNRLQDFQY-LPFAVQCLCTFGSQIWVGYMNGI---VQVLDLEGNL 490 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-laSGS~-D--gtIklWD~-tG~~l~tl~g-H~~~V~sla~dG~~LaSGs~DGt---IrlWD~~G~l 490 (1115)
.......++|||. |+..+. + ..|.+||+ +|+ .+.+.. +...--+++|||++|+.++.++. +.+|+++|+.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 0122356778876 544333 2 35888999 554 334432 21222245599999999887753 7888899988
Q ss_pred ccccccccCCEEEEEec
Q 001245 491 LGGWVAHSSPVIKMAVG 507 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~d 507 (1115)
.+.+.+|.+.+...++.
T Consensus 410 ~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 410 KARLPATDGQVKFPAWS 426 (429)
T ss_pred eEECccCCCCcCCcccC
Confidence 88888888777655543
No 203
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=7.1e-08 Score=104.92 Aligned_cols=260 Identities=13% Similarity=0.111 Sum_probs=158.4
Q ss_pred CCeEEE-e-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~a-g-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
.+.++| | .||.|-+||+.|....+. .+.| ..||.|+++|++|+.|.|+|.|..|++||
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH-~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDTFRIARM-------------------LSAH-VRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred CcceeeeeccCCcEEEEEccccchhhh-------------------hhcc-ccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 334444 4 799999999998876653 2356 78999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeee
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l 297 (1115)
+-.|.+ .+.+ --..+|+...|.|-.+ .+..=.+..--+-++...... ++ ..
T Consensus 94 l~~gs~--------l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~------------~L------p~ 146 (405)
T KOG1273|consen 94 LLKGSP--------LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS------------VL------PK 146 (405)
T ss_pred ccCCCc--------eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee------------ec------cC
Confidence 986432 2222 2467899999998653 222222222222222211100 00 00
Q ss_pred cccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEEecCC-ceeeEEeccCCCCccccccceEE
Q 001245 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDG-QIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 298 ~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl~~~~-~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
......+. .-.+..++..+..+.++.. +-+.++|+.|-+++..|+... +.
T Consensus 147 d~d~dln~-------sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~--------------------- 198 (405)
T KOG1273|consen 147 DDDGDLNS-------SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQA--------------------- 198 (405)
T ss_pred CCcccccc-------ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechhee---------------------
Confidence 00000000 0011234556777777765 569999999999988775322 11
Q ss_pred EEecCCCCccceeeeeeccccceEEeccCcEEEEecccccc--------c--C-----C--CceEEEEEcCCCc-EEEEe
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG--------D--D-----N--RRTEALTTSIDGM-IWTGG 437 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~--------~--h-----~--~~V~aVa~S~Dg~-laSGS 437 (1115)
...+-|+..++.+++...|.++|......+. . | . ..=.+++||.||. +..|+
T Consensus 199 ----------IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 199 ----------IKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred ----------eeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 1123444556666777777777765421110 0 0 0 1123578999997 44443
Q ss_pred -CCCeEEEEcC-CCCeeEEeecCCC-cEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 438 -ANGLLLQWDP-NGNRLQDFQYLPF-AVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 438 -~DgtIklWD~-tG~~l~tl~gH~~-~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.-..+.||.. .|.+++.|.|-.+ ....|. |--..|+|- ..|+|++|...
T Consensus 269 ~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 3567999999 8999999988663 455666 334455555 78899999864
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=9.1e-09 Score=126.24 Aligned_cols=188 Identities=20% Similarity=0.237 Sum_probs=132.6
Q ss_pred CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 142 ~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
+.++.. ..++.+-+||...+...... ...+..- -.+..-+.++++-=++++|+-=+.|.+|+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i---------------~~~er~~-l~~~~~~g~s~~~~~i~~gsv~~~iivW~~ 162 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKI---------------QSDERCT-LYSSLIIGDSAEELYIASGSVFGEIIVWKP 162 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhc---------------CCCceEE-EEeEEEEeccCcEEEEEeccccccEEEEec
Confidence 444433 57888899998877655420 0000000 112223445666778999999999999998
Q ss_pred CCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc
Q 001245 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~ 299 (1115)
...+ +. ..+.||.+.|.++.++.||. ++|.|+|.+||+|++++.+..
T Consensus 163 ~~dn-------~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~------------------------ 210 (967)
T KOG0974|consen 163 HEDN-------KP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL------------------------ 210 (967)
T ss_pred cccC-------Cc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc------------------------
Confidence 7421 11 15889999999999999997 899999999999999774321
Q ss_pred cceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEec
Q 001245 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (1115)
Q Consensus 300 h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~ 379 (1115)
. +..+++ +.|+|+
T Consensus 211 ------------~---~~~fgH-----------saRvw~----------------------------------------- 223 (967)
T KOG0974|consen 211 ------------G---CTGFGH-----------SARVWA----------------------------------------- 223 (967)
T ss_pred ------------C---cccccc-----------cceeEE-----------------------------------------
Confidence 0 111111 223343
Q ss_pred CCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeEEeecCC
Q 001245 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQYLP 459 (1115)
Q Consensus 380 ~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~tl~gH~ 459 (1115)
+.+.+. .++|+++|-|.++|+.+|..++++.+|.
T Consensus 224 ---------------------------------------------~~~~~n-~i~t~gedctcrvW~~~~~~l~~y~~h~ 257 (967)
T KOG0974|consen 224 ---------------------------------------------CCFLPN-RIITVGEDCTCRVWGVNGTQLEVYDEHS 257 (967)
T ss_pred ---------------------------------------------EEeccc-eeEEeccceEEEEEecccceehhhhhhh
Confidence 344455 7899999999999999999999999997
Q ss_pred C-cEEEEE-ec-CCEEEeeecccEEEEEeCCCcc
Q 001245 460 F-AVQCLC-TF-GSQIWVGYMNGIVQVLDLEGNL 490 (1115)
Q Consensus 460 ~-~V~sla-~d-G~~LaSGs~DGtIrlWD~~G~l 490 (1115)
. .|+.++ +. -..+++++.||++++||+.++.
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 6 588888 44 4677899999999999987654
No 205
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.95 E-value=7e-08 Score=115.49 Aligned_cols=74 Identities=12% Similarity=0.013 Sum_probs=55.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCC--c
Q 001245 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~D---gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~Dg--t 263 (1115)
...+.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+..+.+.+.+++|+|||+ | ++.+.+| .
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------EEEeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 4578889999999999988854 469999998632 234445555666889999997 5 4666666 5
Q ss_pred EEEEeCCCcc
Q 001245 264 IKIWPWEAIE 273 (1115)
Q Consensus 264 IrvWdl~t~~ 273 (1115)
|.+||+++++
T Consensus 274 Iy~~d~~~g~ 283 (433)
T PRK04922 274 IYVMDLGSRQ 283 (433)
T ss_pred EEEEECCCCC
Confidence 9999998764
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.95 E-value=3.3e-08 Score=106.56 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=87.6
Q ss_pred cccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcCCCCeeEEee-c---CCCcEEEEE---ecCCEEEeeec-ccEEEEE
Q 001245 415 FGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPNGNRLQDFQ-Y---LPFAVQCLC---TFGSQIWVGYM-NGIVQVL 484 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~tG~~l~tl~-g---H~~~V~sla---~dG~~LaSGs~-DGtIrlW 484 (1115)
|..|..+|..|+|+.++. +||.++||.||++|+....-.|+. . -..+..-++ .|-.++|+-.. +..|.|.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 455777888899988765 699999999999999432222221 1 123555666 35678887664 4679999
Q ss_pred eCC--CccccccccccCCEEEEEe---cCCEEEeecCCCceEEeeecCC
Q 001245 485 DLE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 485 D~~--G~ll~~l~gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~~p 528 (1115)
|+. +..+..|++|.+.|+.|+. .++.|.|||.|..+-+||+..+
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 986 7889999999999999995 5678999999999999999753
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=8.9e-08 Score=106.11 Aligned_cols=285 Identities=14% Similarity=0.134 Sum_probs=162.0
Q ss_pred ceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCc--eeeeccCCceEEEEEcCCCCEE
Q 001245 132 GCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF--KESVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 132 ~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~--~~s~~G~~~V~~la~s~dg~~L 206 (1115)
--|+.+|.++ ++|+++ |.|..++||+++.....++ ..|+ .+.-| .+.|.|++|+..++.|
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------------~KPI~~~~~~H-~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------------PKPIGVMEHPH-RSNIFSLEFDLENRFL 120 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------------CCCceeccCcc-ccceEEEEEccCCeeE
Confidence 3466678776 667777 4677999999986543332 1122 22233 5789999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC---CCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCc
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH---~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~ 282 (1115)
+||..|++|.+-|+++ ++.+-.-+| ++.|..|..+|... |++.+.||.|-+||......
T Consensus 121 ~SG~~~~~VI~HDiEt---------~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~-------- 183 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIET---------KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN-------- 183 (609)
T ss_pred ecCCCcceeEeeeccc---------ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC--------
Confidence 9999999999999997 233333455 55999999999755 78999999999999864221
Q ss_pred ceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeecC-CeEEEEEcCCccE-E-E--EEecCCce--
Q 001245 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAGF-LSFALWDARTREL-L-K--VFNIDGQI-- 354 (1115)
Q Consensus 283 ~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~sd-~tI~lWD~~tg~l-l-~--tl~~~~~~-- 354 (1115)
+..-++.... + .....+-+.|..- +|+.++. +.+-|||.+--+. + + .+.+-.+.
T Consensus 184 -~~~~~~~AN~----------------~-~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 184 -PISLVLPANS----------------G-KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT 245 (609)
T ss_pred -CCceeeecCC----------------C-ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence 1111110000 0 0011112222222 2222222 4588999764321 1 0 01000000
Q ss_pred e-eEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEe--cccccccCCCceEEEEEcCCC
Q 001245 355 E-NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA--AKGGFGDDNRRTEALTTSIDG 431 (1115)
Q Consensus 355 ~-~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~--~~g~l~~h~~~V~aVa~S~Dg 431 (1115)
+ ..+.+++.+.+.. + .+..+..-...|. ++.+.+ ...+ ..|-| ....+.+++|..|-
T Consensus 246 ~~M~~~~~~~G~Q~m---------s-iRR~~~P~~~D~~--S~R~~V------~k~D~N~~GY~--N~~T~KS~~F~~D~ 305 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFM---------S-IRRGKCPLYFDFI--SQRCFV------LKSDHNPNGYC--NIKTIKSMTFIDDY 305 (609)
T ss_pred hhhheeeCCCCCeeh---------h-hhccCCCEEeeee--ccccee------EeccCCCCcce--eeeeeeeeeeecce
Confidence 0 0222333222110 0 0111110001110 101100 0000 01111 22345667788887
Q ss_pred cEEEEeCCCeEEEEcC-C-----C------------------CeeEEeecCCCcEEEEEe--cCCEEEeeecccEEEEEe
Q 001245 432 MIWTGGANGLLLQWDP-N-----G------------------NRLQDFQYLPFAVQCLCT--FGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 432 ~laSGS~DgtIklWD~-t-----G------------------~~l~tl~gH~~~V~sla~--dG~~LaSGs~DGtIrlWD 485 (1115)
.++|||.|-.|.+|-+ . | ..+..|+||..-++.|.+ ...+|+|.+....|+||.
T Consensus 306 ~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 306 TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 8999999999999976 1 2 234568899998888884 467888888888999997
Q ss_pred C
Q 001245 486 L 486 (1115)
Q Consensus 486 ~ 486 (1115)
-
T Consensus 386 ~ 386 (609)
T KOG4227|consen 386 D 386 (609)
T ss_pred c
Confidence 4
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.93 E-value=1.1e-07 Score=118.07 Aligned_cols=165 Identities=19% Similarity=0.209 Sum_probs=98.7
Q ss_pred eEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001245 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 144 ~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~ 221 (1115)
.+++ |.||+||+||+..-.... -..|++ ++.+.. .+.+.++.+-+.|..+|-|+.||.|++-+++
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~------~s~rS~------ltys~~-~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEG------GSARSE------LTYSPE-GSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCc------ceeeee------EEEecc-CCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 5665 589999999976432110 011222 222222 5689999999999999999999999999987
Q ss_pred CCCCCCCCCCcceEEeecC-CCCEEEE-EEeCCC-c--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 222 ARLLDSDDGFGEVLSWQAH-RGPVLSL-CISSYG-D--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 222 ~~~~~~~~~~~~~~~l~GH-~~~V~sV-afSpdG-~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
.... ........+....| .+.|.+| +|.... . |+-+-.-+.|-.||+.+......+..+.+
T Consensus 1129 ~~~~-~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~------------- 1194 (1431)
T KOG1240|consen 1129 HYNV-SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR------------- 1194 (1431)
T ss_pred cccc-ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-------------
Confidence 5110 00000111112223 3344443 554432 2 55666778899999876443322221111
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
| +-+..++.++.+.-++.|. .+.+-+||++=+.++....
T Consensus 1195 ---h-----------G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1195 ---H-----------GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred ---c-----------cceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 1 4466777787777666665 4678999999877776553
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.3e-08 Score=116.84 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=94.2
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCC--c-EEEEeCCCc
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG--D-LWSGSEGGG 263 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG--~-L~SgS~Dgt 263 (1115)
+| ++-|+|++++.+|.+|+|||.|-.+.|||.-.. +..+.. .||.+-|.|+.|-|.. + ++||+.|+.
T Consensus 48 GH-~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 48 GH-TGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred cc-cceecceeecCCCCEEeecCCcceEEeecchhc--------ceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 56 889999999999999999999999999997641 334444 7999999999999864 3 689999999
Q ss_pred EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccc--eecceeeeecCCeEEEEEeCCC-CEEEeec-CCeEEEEEc
Q 001245 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL--SVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDA 339 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~--~~~~~~~~~s~~v~~las~~~~-~~v~S~s-d~tI~lWD~ 339 (1115)
|||.|+...+.. . ..|. .....+......|+-++..+.+ ..+|+++ |++|+-+|+
T Consensus 119 i~lfdl~~~~~~---~------------------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi 177 (758)
T KOG1310|consen 119 IKLFDLDSSKEG---G------------------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI 177 (758)
T ss_pred EEEEeccccccc---c------------------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence 999999752211 0 0011 0111123344778889988887 7889987 799999998
Q ss_pred CC
Q 001245 340 RT 341 (1115)
Q Consensus 340 ~t 341 (1115)
+.
T Consensus 178 RE 179 (758)
T KOG1310|consen 178 RE 179 (758)
T ss_pred cC
Confidence 63
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=3.7e-09 Score=121.22 Aligned_cols=130 Identities=18% Similarity=0.368 Sum_probs=109.5
Q ss_pred EEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEe-ecCCCcEEEEE--e--cCCE
Q 001245 399 IMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--T--FGSQ 471 (1115)
Q Consensus 399 ~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl-~gH~~~V~sla--~--dG~~ 471 (1115)
.++.+.-++++.....|.||++.|+|+.++.||. |+|||.|-.+.|||. .-++++.+ +||..-|.|+. | ..+.
T Consensus 30 y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 30 YMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeE
Confidence 3344445667777788999999999999999998 689999999999999 77777765 58999999998 2 4689
Q ss_pred EEeeecccEEEEEeCCC-----------ccccccccccCCEEEEEe--c-CCEEEeecCCCceEEeeecCC
Q 001245 472 IWVGYMNGIVQVLDLEG-----------NLLGGWVAHSSPVIKMAV--G-AGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 472 LaSGs~DGtIrlWD~~G-----------~ll~~l~gH~~~V~sva~--d-g~~laSgS~DgtIRlWdl~~p 528 (1115)
++||..|..|+|+|++. ..+..|..|+..|-.|+. + +..++|+|.||+||-.|++.|
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 99999999999999751 246778899999999884 3 378999999999999999875
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.86 E-value=1.3e-07 Score=108.52 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=133.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
++..++-.|.||.+.+-+-.+ +......+|.++|.|-.++|||. |+|+++||.||+|.-.....+. +
T Consensus 74 ~~d~~~i~s~DGkf~il~k~~---------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt-l-- 141 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKSA---------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST-V-- 141 (737)
T ss_pred CcceEEEEcCCceEEEecccc---------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH-H--
Confidence 345677788999998887654 23346789999999999999998 9999999999999965422110 0
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEec
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~ 360 (1115)
.+ ....+.|++.+++...+.-+..+-+. ++.|.+
T Consensus 142 ------------------~Q---------~~~~v~c~~W~p~S~~vl~c~g~h~~---------IKpL~~---------- 175 (737)
T KOG1524|consen 142 ------------------VQ---------NEESIRCARWAPNSNSIVFCQGGHIS---------IKPLAA---------- 175 (737)
T ss_pred ------------------hh---------cCceeEEEEECCCCCceEEecCCeEE---------Eeeccc----------
Confidence 00 11457777777665444322111111 111111
Q ss_pred cCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCC
Q 001245 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGAN 439 (1115)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~D 439 (1115)
...+.+|. .|.+-|.++.+++-.. ++||++|
T Consensus 176 ------------------------------------------n~k~i~Wk------AHDGiiL~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 176 ------------------------------------------NSKIIRWR------AHDGLVLSLSWSTQSNIIASGGED 207 (737)
T ss_pred ------------------------------------------ccceeEEe------ccCcEEEEeecCccccceeecCCc
Confidence 11233443 3455566777777655 7899999
Q ss_pred CeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEE--ecCCEEEeec
Q 001245 440 GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA--VGAGYIFTLA 515 (1115)
Q Consensus 440 gtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva--~dg~~laSgS 515 (1115)
-..|+||.-|+.+.+-..|..+|++|+ |+ +..+.||.. +.|+=. -..+.|..++ +||..++-|.
T Consensus 208 ~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~----------p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 208 FRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSS----------PRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred eeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-eeeecC----------CCccceEEEEEcCCCceeeccc
Confidence 999999999999999999999999999 56 666677654 455211 1235677776 4788777766
Q ss_pred CCCceE
Q 001245 516 NHGGIR 521 (1115)
Q Consensus 516 ~DgtIR 521 (1115)
..|.+-
T Consensus 276 ~~G~v~ 281 (737)
T KOG1524|consen 276 STGQLI 281 (737)
T ss_pred cCceEE
Confidence 666554
No 212
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.82 E-value=5.4e-07 Score=100.29 Aligned_cols=228 Identities=13% Similarity=0.168 Sum_probs=146.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEE--EEeCCCcEEEEeCC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW--SGSEGGGIKIWPWE 270 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~--SgS~DgtIrvWdl~ 270 (1115)
.+..+.|.+++..|..|+.||. ++++.+. +........-...|--+-||.. .++ +.-.-+.+|+.+..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~--------~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSP--------FEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCc--------hHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcc
Confidence 4556779999999999999995 6887764 1111111111234666677764 233 33233457777664
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEec
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI 350 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~ 350 (1115)
....+ ..+. +...+.++-.. ..+++-+--..|.|+|+++=++|+++..
T Consensus 77 k~~~I----------------------------Ce~~--fpt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 77 KKTTI----------------------------CEIF--FPTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIET 124 (391)
T ss_pred cCceE----------------------------EEEe--cCCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhc
Confidence 32111 0111 12344444443 4455555445599999998888877631
Q ss_pred C-CceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 351 D-GQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 351 ~-~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
- ... ..+.++.++.
T Consensus 125 ~~~n~-----------------------------------------------------------------~gl~AlS~n~ 139 (391)
T KOG2110|consen 125 TPPNP-----------------------------------------------------------------KGLCALSPNN 139 (391)
T ss_pred cCCCc-----------------------------------------------------------------cceEeeccCC
Confidence 1 000 0111111222
Q ss_pred CC-cEE-EEe-CCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccE-EEEEeCC-CccccccccccC--
Q 001245 430 DG-MIW-TGG-ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGI-VQVLDLE-GNLLGGWVAHSS-- 499 (1115)
Q Consensus 430 Dg-~la-SGS-~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGt-IrlWD~~-G~ll~~l~gH~~-- 499 (1115)
++ .+| =++ .-|.|.|||+ +-+.+.++..|.++|.||+ ++|.+||+||..|| |||+.+. |+.+..|+--.-
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~ 219 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV 219 (391)
T ss_pred CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee
Confidence 21 122 122 2578999999 8899999999999999999 78999999999997 7999986 998888874332
Q ss_pred CEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 500 PVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 500 ~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.|.+++| |+++|+..|.-+||.++.+..
T Consensus 220 ~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 220 SIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 5667776 788999999999999999864
No 213
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=4.1e-08 Score=108.01 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=78.6
Q ss_pred EEEEeCCCeEEEEcC--CCC-eeEEeecCC-CcEEEEEe--cCCEEEeee----cccEEEEEeCC--Ccccccc-ccccC
Q 001245 433 IWTGGANGLLLQWDP--NGN-RLQDFQYLP-FAVQCLCT--FGSQIWVGY----MNGIVQVLDLE--GNLLGGW-VAHSS 499 (1115)
Q Consensus 433 laSGS~DgtIklWD~--tG~-~l~tl~gH~-~~V~sla~--dG~~LaSGs----~DGtIrlWD~~--G~ll~~l-~gH~~ 499 (1115)
+.|++.||+||+||+ .++ ....++.|+ .+-.|++. .++.+++|. .|-.|.+||+. .++++.| ..|.+
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D 166 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND 166 (376)
T ss_pred eEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC
Confidence 789999999999999 333 344566666 45677773 578888887 47789999986 4545554 58999
Q ss_pred CEEEEEe---cCCEEEeecCCCceEEeeecCCCCCchhh
Q 001245 500 PVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSIL 535 (1115)
Q Consensus 500 ~V~sva~---dg~~laSgS~DgtIRlWdl~~p~pld~~i 535 (1115)
-|++|.| ++.+|+|||.||-|-++|+..+ +.++.+
T Consensus 167 DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d-~EeDaL 204 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD-NEEDAL 204 (376)
T ss_pred cceeEEecCCCCCeEEeecccceEEeeecCCC-cchhhH
Confidence 9999997 6789999999999999998765 334333
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=6.2e-07 Score=108.97 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=153.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc----EEEEeCCCcEEEEeCCCc
Q 001245 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD----LWSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 197 la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~----L~SgS~DgtIrvWdl~t~ 272 (1115)
-+||+|++.++- -.+..|+++...++. ++..|.+|..+++++.+.|... ++++|.||+|++||+..+
T Consensus 22 avfSnD~k~l~~-~~~~~V~VyS~~Tg~--------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 22 AVFSNDAKFLFL-CTGNFVKVYSTATGE--------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred cccccCCcEEEE-eeCCEEEEEecchHh--------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 457889888874 456689999999854 3668899999999999988653 579999999999999886
Q ss_pred ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe-ec---CCeEEEEEcCCc--cEEE
Q 001245 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS-AG---FLSFALWDARTR--ELLK 346 (1115)
Q Consensus 273 ~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S-~s---d~tI~lWD~~tg--~ll~ 346 (1115)
+...++...-+-.+.+. . -.+. ..++...++. ....+.+ .+ .+.++=..+.+- ....
T Consensus 93 ~Llkt~~~~~~v~~~~~-----~--~~~a---------~~s~~~~~s~-~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d 155 (792)
T KOG1963|consen 93 ELLKTFDNNLPVHALVY-----K--PAQA---------DISANVYVSV-EDYSILTTFSKKLSKQSSRFVLATFDSAKGD 155 (792)
T ss_pred EEEEEEecCCceeEEEe-----c--hhHh---------CccceeEeec-ccceeeeecccccccceeeeEeeeccccchh
Confidence 65433322111111110 0 0000 0001111111 1112211 11 122222222211 1111
Q ss_pred EEecCCceeeEEeccCCCCcc-ccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFA-MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aV 425 (1115)
.+..+.. ...+...+.+... +..+-..-.+.-.++ ....++. + .-..|+..+.++
T Consensus 156 ~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~-------------~~~~~~~------~----~~~~Htf~~t~~ 211 (792)
T KOG1963|consen 156 FLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKH-------------TKHTSSR------D----ITVHHTFNITCV 211 (792)
T ss_pred hhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEeccc-------------ceeeccc------h----hhhhhcccceeE
Confidence 1111111 1111111111110 000000000000000 0000000 0 012355558899
Q ss_pred EEcCCCc-EEEEeCCCeEEEEcCCC-----CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccc
Q 001245 426 TTSIDGM-IWTGGANGLLLQWDPNG-----NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1115)
Q Consensus 426 a~S~Dg~-laSGS~DgtIklWD~tG-----~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g 496 (1115)
++||.+. +|+|..||.|.+|.--| .-.+.|.=|...|++++ ++|.+|+||+..|..-+|.++ ++ -+=|.-
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR 290 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR 290 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccc
Confidence 9999998 78999999999997533 23455667889999998 689999999999999999987 43 222333
Q ss_pred ccCCEEEEE--ecCCEEEeecCCCceEEeee
Q 001245 497 HSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 497 H~~~V~sva--~dg~~laSgS~DgtIRlWdl 525 (1115)
=.++|..+. +|+.+.+..-.|+.|.+=..
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 356788776 47777666666888887665
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=7.4e-07 Score=106.79 Aligned_cols=74 Identities=15% Similarity=0.016 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCc--
Q 001245 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~---DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~Dgt-- 263 (1115)
..++.+.+|+|||+.|+..+. +..|.+||+.++ ....+..+.+.+.+.+|||||+ | ++.+.|+.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---------~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---------QRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------cEEEeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 568999999999999998874 468999999873 2345667778888999999997 5 57777776
Q ss_pred EEEEeCCCcc
Q 001245 264 IKIWPWEAIE 273 (1115)
Q Consensus 264 IrvWdl~t~~ 273 (1115)
|.+||++++.
T Consensus 272 Iy~~d~~~~~ 281 (435)
T PRK05137 272 IYTMDLRSGT 281 (435)
T ss_pred EEEEECCCCc
Confidence 6666877654
No 216
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.78 E-value=6.1e-09 Score=112.10 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=38.7
Q ss_pred ccEEEEEEEeccccCccCceeeeeeeeecc---ccccCcceEEEEEEEecEEEEEEeecccccchh
Q 001245 642 AGLLIAVWVRKNLKDYVGDVDVAAVPCGFG---RAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (1115)
Q Consensus 642 ~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~---g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~ 704 (1115)
.+..++++.|.++...+..........+.. ....+++.+.+++. +..|+++|+|+.+....
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~~ 135 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSNDE 135 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccchh
Confidence 456788999987654433333222122221 23456777777766 99999999999986544
No 217
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.77 E-value=1.9e-07 Score=105.32 Aligned_cols=47 Identities=13% Similarity=0.255 Sum_probs=38.7
Q ss_pred cccCcceEEEEEEEecEEEEEEeecccccc------hhHHHHHHHHHHHHHhc
Q 001245 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 673 ~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1115)
...+||.+.+++.+.+..+.|+|.||.+.. ..-..|.+++.+|.+.+
T Consensus 117 ~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i 169 (283)
T TIGR03395 117 NLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFI 169 (283)
T ss_pred cccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHH
Confidence 356899999999999999999999998752 22467999999997754
No 218
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.72 E-value=2.1e-07 Score=100.50 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=75.9
Q ss_pred eEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 001245 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA 222 (1115)
Q Consensus 144 ~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~ 222 (1115)
+|+|..+.-+|+|-+.+......+.++-...+ .+-+ ..|+++..+.. +-++|.|.|-|.|..+||+++
T Consensus 114 dlLATs~D~LRlWri~~ee~~~~~~~~L~~~k----------ns~~-~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~ 182 (364)
T KOG0290|consen 114 DLLATSSDFLRLWRIGDEESRVELQSVLNNNK----------NSEF-CAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIET 182 (364)
T ss_pred chhhcccCeEEEEeccCcCCceehhhhhccCc----------cccc-CCcccccccccCCcceeEeecccCeEEEEEEee
Confidence 56776777899998764321111000000001 1112 34555555543 568999999999999999997
Q ss_pred CCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCc
Q 001245 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 223 ~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~ 272 (1115)
+. .+....+|.+|...|..|+|..+|. ++|.|.||.||+.|+...
T Consensus 183 ~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 183 GV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL 229 (364)
T ss_pred cc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc
Confidence 41 1223456899999999999999775 689999999999999653
No 219
>PRK05421 hypothetical protein; Provisional
Probab=98.71 E-value=3.4e-07 Score=102.27 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=34.6
Q ss_pred CcceEEEEEEE-ecEEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 676 NKGAVGLRVRV-YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 676 NKGaV~ir~~i-~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
-||++.+.+.+ .+..|.|+|+||.+.....+.|.+++..|.+.+
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~~~r~~q~~~l~~~~ 178 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLGVDVYSKQLEPIGDQI 178 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcChHHHHHHHHHHHHHH
Confidence 37999999988 566899999999876444567888888887654
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=2.5e-06 Score=102.08 Aligned_cols=206 Identities=12% Similarity=0.001 Sum_probs=119.1
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe---CCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS---~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
..|.+||.++. ....+..+...+.+.+|||||+ |+..+ .+..|.+|++.+++....
T Consensus 179 ~~l~~~d~dg~---------~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l----------- 238 (429)
T PRK03629 179 YELRVSDYDGY---------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV----------- 238 (429)
T ss_pred eeEEEEcCCCC---------CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-----------
Confidence 47888998862 2345566778999999999997 65333 345799999987643210
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--C--CeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--F--LSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d--~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
..+.++. ....+++++..|+-.. + ..|.+||+.+|++.+....
T Consensus 239 ------~~~~~~~-------------~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-------------- 285 (429)
T PRK03629 239 ------ASFPRHN-------------GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-------------- 285 (429)
T ss_pred ------cCCCCCc-------------CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC--------------
Confidence 0011111 1234566666655331 2 3588889887764322110
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeC-CCeE
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLL 442 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~-DgtI 442 (1115)
...+....++|||. |+..+. ++..
T Consensus 286 ------------------------------------------------------~~~~~~~~wSPDG~~I~f~s~~~g~~ 311 (429)
T PRK03629 286 ------------------------------------------------------RSNNTEPTWFPDSQNLAYTSDQAGRP 311 (429)
T ss_pred ------------------------------------------------------CCCcCceEECCCCCEEEEEeCCCCCc
Confidence 00122356788887 655554 3455
Q ss_pred EEE--cCCCCeeEEeecCCCcEE--EEEecCCEEEeeecc---cEEEEEeCCCcccccccc-ccCCEEEEEecCCEEEee
Q 001245 443 LQW--DPNGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMN---GIVQVLDLEGNLLGGWVA-HSSPVIKMAVGAGYIFTL 514 (1115)
Q Consensus 443 klW--D~tG~~l~tl~gH~~~V~--sla~dG~~LaSGs~D---GtIrlWD~~G~ll~~l~g-H~~~V~sva~dg~~laSg 514 (1115)
+|| |+++...+.+..+...+. ++.|||++|+..+.+ ..|.+||+++.....+.. +...-.+.++||++|+.+
T Consensus 312 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 312 QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYS 391 (429)
T ss_pred eEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEE
Confidence 555 664433444444333333 344899999876543 468899987332333332 212223355799999988
Q ss_pred cCCCc---eEEeee
Q 001245 515 ANHGG---IRGWNV 525 (1115)
Q Consensus 515 S~Dgt---IRlWdl 525 (1115)
+.|+. +.+|++
T Consensus 392 s~~~~~~~l~~~~~ 405 (429)
T PRK03629 392 SSQGMGSVLNLVST 405 (429)
T ss_pred EcCCCceEEEEEEC
Confidence 88876 444444
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=4.1e-06 Score=100.41 Aligned_cols=197 Identities=13% Similarity=-0.005 Sum_probs=114.1
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe---CCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS---EGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS---~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
..|.+||.++. ....+..|.++|.+.+|||||+ |+..+ .+..|.+||+++++... ++
T Consensus 182 ~~l~~~d~dg~---------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~--------- 242 (435)
T PRK05137 182 KRLAIMDQDGA---------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG--------- 242 (435)
T ss_pred eEEEEECCCCC---------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---------
Confidence 47888888752 2456778899999999999997 66544 34689999998865321 00
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEE-eec-C--CeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~-S~s-d--~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
.+. +.+...++++++..|+ +.+ + ..|.+||+.++++.+.. .+
T Consensus 243 ----------~~~----------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt-~~------------- 288 (435)
T PRK05137 243 ----------NFP----------GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLT-DS------------- 288 (435)
T ss_pred ----------cCC----------CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEcc-CC-------------
Confidence 000 1122334566666553 332 2 34777788776543211 00
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeC-CC--
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NG-- 440 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~-Dg-- 440 (1115)
........++|||. |+..+. +|
T Consensus 289 ------------------------------------------------------~~~~~~~~~spDG~~i~f~s~~~g~~ 314 (435)
T PRK05137 289 ------------------------------------------------------PAIDTSPSYSPDGSQIVFESDRSGSP 314 (435)
T ss_pred ------------------------------------------------------CCccCceeEcCCCCEEEEEECCCCCC
Confidence 00112245677776 554442 33
Q ss_pred eEEEEcCCCCeeEEeecCCCcEEEE--EecCCEEEeeecc---cEEEEEeCCCccccccc-cccCCEEEEEecCCEEEee
Q 001245 441 LLLQWDPNGNRLQDFQYLPFAVQCL--CTFGSQIWVGYMN---GIVQVLDLEGNLLGGWV-AHSSPVIKMAVGAGYIFTL 514 (1115)
Q Consensus 441 tIklWD~tG~~l~tl~gH~~~V~sl--a~dG~~LaSGs~D---GtIrlWD~~G~ll~~l~-gH~~~V~sva~dg~~laSg 514 (1115)
.|.+||++|...+.+..+...+... .|||++|+..+.+ ..|.+||+++.....+. ++...-.+.++||++|+-.
T Consensus 315 ~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 315 QLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred eEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEE
Confidence 6888888665555555444444443 3899999876543 47899998754333332 2211122344688887654
Q ss_pred cC
Q 001245 515 AN 516 (1115)
Q Consensus 515 S~ 516 (1115)
+.
T Consensus 395 ~~ 396 (435)
T PRK05137 395 RQ 396 (435)
T ss_pred Ec
Confidence 43
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.2e-06 Score=96.18 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=86.8
Q ss_pred cEEEEeCCCeEEEEcC-CC-CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccc-cccccCCEEEEE
Q 001245 432 MIWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMA 505 (1115)
Q Consensus 432 ~laSGS~DgtIklWD~-tG-~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~-l~gH~~~V~sva 505 (1115)
++|+++.-+.+|+||. .+ +++..|.--..+|+++. |+|..|++|..-|.+..+|+. ++++.. +.|-++.|.+|.
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih 297 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH 297 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE
Confidence 5899999999999999 55 56778877788899888 899999999999999999997 677665 899999999998
Q ss_pred ecCC--EEEeecCCCceEEeeecCCCCC
Q 001245 506 VGAG--YIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 506 ~dg~--~laSgS~DgtIRlWdl~~p~pl 531 (1115)
.+++ +++|+|.|.-+||.|+.+-.++
T Consensus 298 ~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 298 CHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred EcCCCceEEeeccceeEEEeecccchhh
Confidence 7655 9999999999999999874444
No 223
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.66 E-value=1.4e-05 Score=93.80 Aligned_cols=305 Identities=14% Similarity=0.154 Sum_probs=163.0
Q ss_pred EEeCCeEEEe-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001245 139 VCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (1115)
Q Consensus 139 ~~~~~~l~ag-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrl 217 (1115)
+..++.++++ .++.|..+|.++|...... .+..... .. .++ ++..|+.|+.||.+..
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~---------------~~~~~~~-~~----p~v--~~~~v~v~~~~g~l~a 119 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRV---------------DLDERLS-GG----VGA--DGGLVFVGTEKGEVIA 119 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeee---------------cCCCCcc-cc----eEE--cCCEEEEEcCCCEEEE
Confidence 3457788875 5679999999999876530 0000011 11 222 4678888999999999
Q ss_pred EECCCCCCCCCCCCcceEEeecC-CCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 218 WKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l~GH-~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
+|.++|+ . .|+.. .+.+.+.....++.++.++.|+.|..||.++++............ .
T Consensus 120 ld~~tG~--------~--~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~----------~ 179 (377)
T TIGR03300 120 LDAEDGK--------E--LWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL----------T 179 (377)
T ss_pred EECCCCc--------E--eeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce----------e
Confidence 9998642 2 23322 223332222234567778889999999999887654321110000 0
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccC----CCCccccccc
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSL----LPDFAMEDEF 372 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~----~~~~~~~~~~ 372 (1115)
+.+ ....+ .. ++..++...++.+..+|+++|+.+......... ....... .....+.++
T Consensus 180 ~~~----------~~sp~----~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~-g~~~~~~~~~~~~~p~~~~~- 242 (377)
T TIGR03300 180 LRG----------SASPV----IA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK-GRTELERLVDVDGDPVVDGG- 242 (377)
T ss_pred ecC----------CCCCE----EE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCC-CCCchhhhhccCCccEEECC-
Confidence 000 00111 11 122223333577889999999877543211000 0000000 000000000
Q ss_pred eEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCe
Q 001245 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNR 451 (1115)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~ 451 (1115)
. ++.. ..++...+.-...+-.+|... . ......++ .++.++.++.||.|..+|. +|+.
T Consensus 243 ~--vy~~------------~~~g~l~a~d~~tG~~~W~~~--~----~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 243 Q--VYAV------------SYQGRVAALDLRSGRVLWKRD--A----SSYQGPAV-DDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred E--EEEE------------EcCCEEEEEECCCCcEEEeec--c----CCccCceE-eCCEEEEECCCCeEEEEECCCCcE
Confidence 0 0000 000111111111222233321 0 01111222 3567888899999999999 8987
Q ss_pred eEEeecCC-CcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE-EEecCCEEEeecCCCceEEe
Q 001245 452 LQDFQYLP-FAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 452 l~tl~gH~-~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s-va~dg~~laSgS~DgtIRlW 523 (1115)
+-....-. ..+.+....|.+|++++.+|.|.+||.+ |+.+..+..|...+.+ .+..++.|+.++.||.|..+
T Consensus 302 ~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 302 LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 75543211 1222333468899999999999999986 9999888877755443 34445568889999988754
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=2.3e-06 Score=102.40 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=53.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIK 265 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~D---gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIr 265 (1115)
...+.+.+|+|||+.|+..+.+ ..|.+||+.++. ...+....+.+.+.+|||||+ | ++.+.|+..+
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---------RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 4578889999999999988754 359999998732 233444456677899999997 6 4778899888
Q ss_pred EEeCC
Q 001245 266 IWPWE 270 (1115)
Q Consensus 266 vWdl~ 270 (1115)
||.++
T Consensus 266 Iy~~d 270 (427)
T PRK02889 266 IYTVN 270 (427)
T ss_pred EEEEE
Confidence 88654
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.66 E-value=5.3e-08 Score=110.46 Aligned_cols=216 Identities=14% Similarity=0.215 Sum_probs=140.7
Q ss_pred EEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC
Q 001245 245 LSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR 323 (1115)
Q Consensus 245 ~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~ 323 (1115)
..+.++.+|. |+-|+.-|.|-..||.++.....+. +. ..|..+.+-+..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-----------------v~-------------Etv~Dv~~LHne 182 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-----------------VM-------------ETVRDVTFLHNE 182 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------hh-------------hhhhhhhhhcch
Confidence 5688999998 8889999999999998865442221 10 112222223333
Q ss_pred CEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc
Q 001245 324 AKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1115)
Q Consensus 324 ~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~ 403 (1115)
..++.+.-+-+.||| ..|..++.+..+..+ ++++|- +---.+++++.
T Consensus 183 q~~AVAQK~y~yvYD-~~GtElHClk~~~~v-~rLeFL-------------------------------PyHfLL~~~~~ 229 (545)
T KOG1272|consen 183 QFFAVAQKKYVYVYD-NNGTELHCLKRHIRV-ARLEFL-------------------------------PYHFLLVAASE 229 (545)
T ss_pred HHHHhhhhceEEEec-CCCcEEeehhhcCch-hhhccc-------------------------------chhheeeeccc
Confidence 334444446688999 568878877655544 333333 32223333333
Q ss_pred CcEEEEec--cccccc----CCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEE
Q 001245 404 DAVRRVAA--KGGFGD----DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIW 473 (1115)
Q Consensus 404 d~v~~~~~--~g~l~~----h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~La 473 (1115)
.+...+.+ .|.++. -.+.+..+..+|-.- +-+|...|+|-+|.. .-++|-.+.+|.++|.+|| ++|.++|
T Consensus 230 ~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEe
Confidence 33333332 132222 234566666666544 569999999999999 5678888889999999999 5799999
Q ss_pred eeecccEEEEEeCCC-ccccccccccCCEEEEEecCCEEEeecCCCceEEee
Q 001245 474 VGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 474 SGs~DGtIrlWD~~G-~ll~~l~gH~~~V~sva~dg~~laSgS~DgtIRlWd 524 (1115)
+++.|..|+|||+.. ..+.+... .-+...+++..+.++.+|.-..|.+|.
T Consensus 310 TtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 310 TTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred ecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeeeeeh
Confidence 999999999999873 33333322 234556777666677777777899996
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.66 E-value=3.3e-06 Score=100.16 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=55.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCC--c
Q 001245 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--G 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~D---gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~Dg--t 263 (1115)
...+.+.+++|||+.||.++.+ ..|.+||+.++. ...+..+.+.+.+++|+|||+ | ++.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---------EEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 3468888999999999988765 489999998632 334455667788899999997 5 4666555 5
Q ss_pred EEEEeCCCcc
Q 001245 264 IKIWPWEAIE 273 (1115)
Q Consensus 264 IrvWdl~t~~ 273 (1115)
|.+||+.++.
T Consensus 260 i~~~d~~~~~ 269 (417)
T TIGR02800 260 IYVMDLDGKQ 269 (417)
T ss_pred EEEEECCCCC
Confidence 8888887653
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=2.2e-07 Score=106.18 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=155.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVWSGHRDGRIMCWKMNA-RL 224 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~--dg~~LaSGS~DgtIrlWdl~~-~~ 224 (1115)
|.|..|-|||-..+..... . +++| ...|.--.|=| +.+.|++.+.||.+|+=.+.. +.
T Consensus 161 SDD~~vv~WdW~~~~~~l~-------f-----------~SGH-~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~ 221 (559)
T KOG1334|consen 161 SDDLQVVVWDWVSGSPKLS-------F-----------ESGH-CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY 221 (559)
T ss_pred CccceEEeehhhccCcccc-------c-----------cccc-ccchhhhhccCCCCCcCceeccccCceeeeeeccccc
Confidence 4677999999887765542 1 2234 33333333333 356799999999999987642 21
Q ss_pred CCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccce
Q 001245 225 LDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (1115)
Q Consensus 225 ~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~ 302 (1115)
+ +....+--|.++|..++.-|+.- |+|++.|+.++-.|+.+....-.+. +-+.+..
T Consensus 222 ~------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----------------cr~~~~~ 279 (559)
T KOG1334|consen 222 V------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----------------CREADEK 279 (559)
T ss_pred e------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----------------eeccCCc
Confidence 1 22345667999999999999873 8999999999999987643321110 0011110
Q ss_pred ecceeeeecCCeEEEEEeCCCC-EE-EeecCCeEEEEEcCCcc------EEEEEecCCc------eeeEEeccCCC-Cc-
Q 001245 303 VNGFSSILTSDIKNLLSDHSRA-KV-WSAGFLSFALWDARTRE------LLKVFNIDGQ------IENRVDMSLLP-DF- 366 (1115)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~-~v-~S~sd~tI~lWD~~tg~------ll~tl~~~~~------~~~~v~~s~~~-~~- 366 (1115)
.. -....++..+.+. .+ +.+.+..+++||.+.-. .++.|-++.- -++++.++..+ ..
T Consensus 280 -~~------v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 280 -ER------VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred -cc------eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 00 0122334444333 22 23346778999976422 1222322111 12233333111 00
Q ss_pred cccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCC--ceEEEE-EcCCC-cEEEEeCCCeE
Q 001245 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR--RTEALT-TSIDG-MIWTGGANGLL 442 (1115)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~--~V~aVa-~S~Dg-~laSGS~DgtI 442 (1115)
+.-.+..+-++...... .......+ .+.-..+..+.||.. .|..|- |.|.. .++|||..|.|
T Consensus 353 aSYnDe~IYLF~~~~~~-G~~p~~~s-------------~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI 418 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGD-GSEPDPSS-------------PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI 418 (559)
T ss_pred eeecccceEEecccccc-CCCCCCCc-------------chhhccchhhcccccccccceeeeccCccceEEecCccceE
Confidence 00001111111110000 00000000 000000112455543 455565 45554 48999999999
Q ss_pred EEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 443 LQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 443 klWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
-||+. +|+.++-+++...-|+||. |---.|||.+.|..||||-.
T Consensus 419 FiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 419 FIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred EEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 99999 8999999999777899999 45789999999999999985
No 228
>PRK11756 exonuclease III; Provisional
Probab=98.64 E-value=1.6e-07 Score=105.19 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=68.0
Q ss_pred EEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhcccCCCCceE
Q 001245 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTFE 634 (1115)
Q Consensus 555 ~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L~~~~~y~ 634 (1115)
-|.||||++.......+.+||.. .+|||+ +|||+......+ .. | .+ +.+ ++.+.
T Consensus 2 ri~T~Nv~g~~~~~~~i~~~i~~--~~pDIi--~LQE~~~~~~~~----------------~~-~--~~-~~~--gy~~~ 55 (268)
T PRK11756 2 KFVSFNINGLRARPHQLEAIIEK--HQPDVI--GLQETKVHDEMF----------------PL-E--EV-EAL--GYHVF 55 (268)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHh--cCCCEE--EEEecccccccC----------------CH-H--HH-Hhc--CCEEE
Confidence 57899999765444567888864 457875 599985422110 00 1 11 112 23222
Q ss_pred EEeeeccccEEEEEEEeccccCccCceeeeeeeeeccc--cccCcceEEEEEEEecEEEEEEeecccccc-----hhHHH
Q 001245 635 RVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL-----EAVNR 707 (1115)
Q Consensus 635 ~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g--~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~-----~~~~~ 707 (1115)
.-....-.|+ +++.|..+. .+. .++.+ .....+.+.+++...+..|.|+|+|++.+. .+.+.
T Consensus 56 ~~~~~~~~Gv--ailSr~p~~----~~~-----~~~~~~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~ 124 (268)
T PRK11756 56 YHGQKGHYGV--ALLSKQTPI----AVR-----KGFPTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPA 124 (268)
T ss_pred EeCCCCCCEE--EEEECCChH----HeE-----ECCCCccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHH
Confidence 2222333454 456776542 111 12211 112357888888876556999999997653 23334
Q ss_pred HHHHHHHHHHh
Q 001245 708 RNADFDHVYRT 718 (1115)
Q Consensus 708 Rn~d~~~I~~~ 718 (1115)
|.+.+..+...
T Consensus 125 r~~~~~~l~~~ 135 (268)
T PRK11756 125 KRQFYQDLQNY 135 (268)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.64 E-value=4.9e-08 Score=112.33 Aligned_cols=87 Identities=23% Similarity=0.249 Sum_probs=77.2
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccccc
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~ 495 (1115)
.|+..+||+||+ ||+.|.||.+||+|. +-+++..++..-+..+||+ |||++|++|++|--|.||... ++++..=.
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 677889999998 899999999999999 5566667766667889998 899999999999999999976 88888899
Q ss_pred cccCCEEEEEec
Q 001245 496 AHSSPVIKMAVG 507 (1115)
Q Consensus 496 gH~~~V~sva~d 507 (1115)
||..||..|+||
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999988
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.63 E-value=6.9e-06 Score=90.21 Aligned_cols=90 Identities=13% Similarity=0.240 Sum_probs=68.4
Q ss_pred CCCeEEEEcCCC-C--eeEEeecCCCcEEEEE--ecCCEEEeeecccE-EEEEeCC-Cccccccccc--cCCEEEEEe--
Q 001245 438 ANGLLLQWDPNG-N--RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGI-VQVLDLE-GNLLGGWVAH--SSPVIKMAV-- 506 (1115)
Q Consensus 438 ~DgtIklWD~tG-~--~l~tl~gH~~~V~sla--~dG~~LaSGs~DGt-IrlWD~~-G~ll~~l~gH--~~~V~sva~-- 506 (1115)
.-|.|+|=|+.. + ....+.+|...|.||+ -+|.+||+||..|| |||||.. |.+++.++-- ...|.+|++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 346788888732 2 2467788888888888 57889999988887 7899876 8888777632 246888885
Q ss_pred cCCEEEeecCCCceEEeeecC
Q 001245 507 GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 507 dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+.++|+.+|..||+.++.+..
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 678888888889998888865
No 231
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=9.1e-08 Score=109.52 Aligned_cols=248 Identities=15% Similarity=0.138 Sum_probs=150.3
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvW 267 (1115)
+| ...|.+++.-.+..-.+|+|+|.|||+|++... +++...-.+..+.++|+.+|.++.|-.+-+ .-+|.||-|.+|
T Consensus 733 GH-~~~iRai~AidNENSFiSASkDKTVKLWSik~E-gD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlW 809 (1034)
T KOG4190|consen 733 GH-QEKIRAIAAIDNENSFISASKDKTVKLWSIKPE-GDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLW 809 (1034)
T ss_pred Cc-HHHhHHHHhcccccceeeccCCceEEEEEeccc-cCccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceee
Confidence 45 666777665555667889999999999998642 111111124456799999999999988754 334569999999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
|.-.+...-......+ |. ..+.++|+-.-+..-.++.++ ..|||+.|++.++...
T Consensus 810 DPFigr~Laq~~dapk----------------~~--------a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~ 865 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPK----------------EG--------AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC 865 (1034)
T ss_pred cccccchhHhhhcCcc----------------cC--------CCceeEecccCcchheeeeccchhhheeeeccccccee
Confidence 9855433211111111 11 013344443322111222223 3689999998877543
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
.++... . .+....+++++
T Consensus 866 E~kVcn--------a------------------------------------------------------~~Pna~~R~ia 883 (1034)
T KOG4190|consen 866 ELKVCN--------A------------------------------------------------------PGPNALTRAIA 883 (1034)
T ss_pred eEEecc--------C------------------------------------------------------CCCchheeEEE
Confidence 332100 0 01112355677
Q ss_pred EcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE-ecCCEEEeeecccEEEE-EeC-CCccccccccccCCE
Q 001245 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-TFGSQIWVGYMNGIVQV-LDL-EGNLLGGWVAHSSPV 501 (1115)
Q Consensus 427 ~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla-~dG~~LaSGs~DGtIrl-WD~-~G~ll~~l~gH~~~V 501 (1115)
+.+.|. ++.|-.+|+|.+.|. +|+.+..+..-......++ |..+.|++...|.++-| |-. +|......+...++.
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 666665 788888999999999 9998887776555566666 78889999889999988 874 465444444333322
Q ss_pred EEEEecCCEEEeecCCCceEEee
Q 001245 502 IKMAVGAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 502 ~sva~dg~~laSgS~DgtIRlWd 524 (1115)
-=+..-|-.++++-..+.++++-
T Consensus 964 hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 964 HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred hhhhccCceeEEeccCcEEEEEe
Confidence 22222344566665556666664
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.59 E-value=3.6e-05 Score=90.19 Aligned_cols=283 Identities=14% Similarity=0.114 Sum_probs=154.3
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcce
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~ 284 (1115)
+++-..+|+|.+.|.++. +.+.++....+.-..++|+|||+ ++.++.||.|-++|+.+.+..-++
T Consensus 9 ~V~~~~~~~v~viD~~t~--------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i------ 74 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN--------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI------ 74 (369)
T ss_dssp EEEEGGGTEEEEEETTT---------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE------
T ss_pred EEEecCCCEEEEEECCCC--------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE------
Confidence 455667899999998862 34556655444445688999998 777889999999999886543111
Q ss_pred eEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCc-------ee
Q 001245 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQ-------IE 355 (1115)
Q Consensus 285 ~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~-------~~ 355 (1115)
.. + .....++.++++..++.+. .+++.++|.+|.+.++++...+. -+
T Consensus 75 -----------~~------G-------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 75 -----------KV------G-------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp -----------E-------S-------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred -----------ec------C-------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence 00 0 2235677788888887654 58999999999999998753221 11
Q ss_pred eEEeccCCCC-c--cccccceEEEEecCCCCc----------cceeeeeeccccceEEec--cCcEEEEecc-ccc----
Q 001245 356 NRVDMSLLPD-F--AMEDEFKTKIVTSSKKDK----------AQSSFGFFQRSRNAIMGA--ADAVRRVAAK-GGF---- 415 (1115)
Q Consensus 356 ~~v~~s~~~~-~--~~~~~~~~~~~~~~~~~~----------~~~~v~f~~~~~~~~~Gs--~d~v~~~~~~-g~l---- 415 (1115)
..+-.++... . ...+...++++.-..... ......+.++++.++.+. .+.+..++.+ +.+
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 2333344333 2 223334555554222110 011234556666555542 3445455442 111
Q ss_pred ----ccCCCceEEEEE---------cCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEee---
Q 001245 416 ----GDDNRRTEALTT---------SIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVG--- 475 (1115)
Q Consensus 416 ----~~h~~~V~aVa~---------S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSG--- 475 (1115)
..|..+...+.. +..+. .++.-....+.+||. +-+.++++...... .-+. |++++|++.
T Consensus 211 ~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 211 DTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp E-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT
T ss_pred eccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccC
Confidence 112122222211 11222 222222335667888 78999999887777 4444 899999998
Q ss_pred -ecccEEEEEeCC-CccccccccccC-CEEEEEe--cCCEEEeecCC--CceEEeeecC
Q 001245 476 -YMNGIVQVLDLE-GNLLGGWVAHSS-PVIKMAV--GAGYIFTLANH--GGIRGWNVTS 527 (1115)
Q Consensus 476 -s~DGtIrlWD~~-G~ll~~l~gH~~-~V~sva~--dg~~laSgS~D--gtIRlWdl~~ 527 (1115)
...++|.|+|.+ -+.+.++....+ .+..+.+ ||++++-..+| +.|.++|..+
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred CCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 456899999987 455555543222 4777775 88887755443 3699999765
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.2e-06 Score=102.58 Aligned_cols=106 Identities=21% Similarity=0.315 Sum_probs=85.0
Q ss_pred CceEEEEEcCC-CcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 420 RRTEALTTSID-GMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 420 ~~V~aVa~S~D-g~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
+.|+++..+.+ +.|.|+++|+.+..|+. +++.++.+.+....+.+++ +||++|++|| +.|++||++ ++.+.+|
T Consensus 103 ~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 103 GNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITF 180 (541)
T ss_pred CcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe
Confidence 34444443333 45899999999999999 8999999998888888777 7999999885 579999998 8999999
Q ss_pred ccccCCEEEEEe--c-----CCEEE-eecCCCceEEeeecC
Q 001245 495 VAHSSPVIKMAV--G-----AGYIF-TLANHGGIRGWNVTS 527 (1115)
Q Consensus 495 ~gH~~~V~sva~--d-----g~~la-SgS~DgtIRlWdl~~ 527 (1115)
.||.++|.+++| + |.++. ++..+..|-+|-+..
T Consensus 181 tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 181 TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999985 3 55655 556777888887653
No 234
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=4.6e-07 Score=100.17 Aligned_cols=37 Identities=30% Similarity=0.526 Sum_probs=25.8
Q ss_pred eEEEEEEeCCCCCCchhh-hccccCCCCCceeEEEEEecccC
Q 001245 554 ILAGTWNVGQGRASQDAL-ISWLGSAASDVGIVVVGLQEVEM 594 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~~L-~~wl~~~~~~~Di~viGlQEi~~ 594 (1115)
+-|.||||++.......+ .+||.. .+||| |+|||+..
T Consensus 1 lri~t~Nv~g~~~~~~~~~~~~l~~--~~~DI--v~LQE~~~ 38 (255)
T TIGR00633 1 MKIISWNVNGLRARLHKLFLDWLKE--EQPDV--LCLQETKV 38 (255)
T ss_pred CEEEEEecccHHHHhhccHHHHHHh--cCCCE--EEEEeccC
Confidence 358999999865544455 677763 35665 78999865
No 235
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.57 E-value=4.2e-06 Score=100.26 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=40.7
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeC---CCcEEEEeCCCcce
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGIKIWPWEAIEK 274 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~---DgtIrvWdl~t~~~ 274 (1115)
..+|.+||.+++ ....+..|...|.+.+|+|||+ |+..+. +..|.+||+.+++.
T Consensus 183 ~~~l~i~D~~g~---------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~ 240 (433)
T PRK04922 183 RYALQVADSDGY---------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR 240 (433)
T ss_pred eEEEEEECCCCC---------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE
Confidence 346999998752 2455677888999999999997 766653 34799999987654
No 236
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.55 E-value=9.8e-06 Score=89.68 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
.+++.++.+.+....|+-|-..|++.-..+... -+.-...+.+..|.+.|..+.|+..-+ ++|.+.|+.+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed----fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~ 138 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSED----FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF 138 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhh----hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce
Confidence 578899999999999999999999999987641 111123456789999999999997766 6899999876
No 237
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.54 E-value=6.2e-06 Score=90.54 Aligned_cols=237 Identities=10% Similarity=0.058 Sum_probs=162.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC-cEEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG-~L~SgS~DgtIrvWdl 269 (1115)
..+++|.|+++|.+.+|.+-....|-++...+. ...+..++++.|...|+.|.++|.+ +|++||.|.--.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~-----~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA-----DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCC-----CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 468999999999999999999999999998753 2246678999999999999999988 5999999999999988
Q ss_pred C-Ccc--eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 270 E-AIE--KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 270 ~-t~~--~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
. .++ +.+. .++ + +...+++--++...+++.++ ...|.||=.+.
T Consensus 85 ~~~~~Wkptlv------------------LlR-i----------NrAAt~V~WsP~enkFAVgSgar~isVcy~E~---- 131 (361)
T KOG1523|consen 85 PSGGTWKPTLV------------------LLR-I----------NRAATCVKWSPKENKFAVGSGARLISVCYYEQ---- 131 (361)
T ss_pred CCCCeecccee------------------EEE-e----------ccceeeEeecCcCceEEeccCccEEEEEEEec----
Confidence 3 221 1111 111 1 13345666677777776654 34566665321
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEE
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aV 425 (1115)
.... |-+ +..-..+...|.++
T Consensus 132 -----ENdW----------------------WVs--------------------------------KhikkPirStv~sl 152 (361)
T KOG1523|consen 132 -----ENDW----------------------WVS--------------------------------KHIKKPIRSTVTSL 152 (361)
T ss_pred -----ccce----------------------ehh--------------------------------hhhCCccccceeee
Confidence 0000 100 11111233467788
Q ss_pred EEcCCCc-EEEEeCCCeEEEEcC--CC-----------------CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEE
Q 001245 426 TTSIDGM-IWTGGANGLLLQWDP--NG-----------------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 426 a~S~Dg~-laSGS~DgtIklWD~--tG-----------------~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrl 483 (1115)
.+.|++. +++||.|+..|++.. .+ ++..++....++|..+. ++|.+|+=.+.|++|.+
T Consensus 153 dWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 153 DWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred eccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence 8888887 689999999999863 21 33444545567888888 67999999999999999
Q ss_pred EeCCC--ccccccccccCCEEEEEe-cCCEEEeecCCCceEEee
Q 001245 484 LDLEG--NLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 484 WD~~G--~ll~~l~gH~~~V~sva~-dg~~laSgS~DgtIRlWd 524 (1115)
=|..+ +.+++...-.-+-.++.+ ....++.+++|+.=-+..
T Consensus 233 ~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 233 VDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFV 276 (361)
T ss_pred eecCCCchhccchhhccCCceeeEeecCCceeecCCCCCceEEE
Confidence 99774 234444433367777764 667788888886544443
No 238
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.52 E-value=6.9e-06 Score=99.57 Aligned_cols=236 Identities=19% Similarity=0.217 Sum_probs=141.4
Q ss_pred CCeEEE-e-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC--CCEEEEEeCCCeEEE
Q 001245 142 EEQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGVVWSGHRDGRIMC 217 (1115)
Q Consensus 142 ~~~l~a-g-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d--g~~LaSGS~DgtIrl 217 (1115)
...+++ | .+|.|-+||+..+...-. .+ ..+....| ..+|..+.+-.+ +.-++|+|.||.|+.
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~---------s~----ls~~~~sh-~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPP---------SG----LSALEVSH-SEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCC---------cc----cccccccC-CcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 334455 3 789999999886654210 01 11223345 678888888654 455999999999999
Q ss_pred EECCCCCCCCCCCCcceEEe--------ecC-CCCEEEEEEeCCC--cEEEEeCCCcEEE---EeCCCcceeeccCCCcc
Q 001245 218 WKMNARLLDSDDGFGEVLSW--------QAH-RGPVLSLCISSYG--DLWSGSEGGGIKI---WPWEAIEKALSLKPEER 283 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l--------~GH-~~~V~sVafSpdG--~L~SgS~DgtIrv---Wdl~t~~~~l~~~~~~~ 283 (1115)
|+++.-.. + .+...+ +.+ ...+++++|.+.. .++-|+++|.|-. ++...... ..
T Consensus 320 W~~~~l~~----P-~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-~~------ 387 (555)
T KOG1587|consen 320 WDTDMLSL----P-VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-VS------ 387 (555)
T ss_pred eecccccc----c-hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-cc------
Confidence 98763111 0 001111 111 3468999998754 2789999998865 23322110 00
Q ss_pred eeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEE-eecCCeEEEEEcCC-ccEEEEEecCCceeeEEecc
Q 001245 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDART-RELLKVFNIDGQIENRVDMS 361 (1115)
Q Consensus 284 ~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~-S~sd~tI~lWD~~t-g~ll~tl~~~~~~~~~v~~s 361 (1115)
..+|... ....+.+..+..++-..+++ +++|-+++||.-.. ...+-
T Consensus 388 -------------~~~~~~~----~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~--------------- 435 (555)
T KOG1587|consen 388 -------------YKGHSTF----ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL--------------- 435 (555)
T ss_pred -------------ccccccc----cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch---------------
Confidence 0111100 01125666666666555554 56688999998431 01000
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC--cEEEEeCC
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG--MIWTGGAN 439 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg--~laSGS~D 439 (1115)
.+..+...|.++++||-- .++++..|
T Consensus 436 ----------------------------------------------------~~~~~~~~v~~vaWSptrpavF~~~d~~ 463 (555)
T KOG1587|consen 436 ----------------------------------------------------SLDSSPDYVTDVAWSPTRPAVFATVDGD 463 (555)
T ss_pred ----------------------------------------------------hhhhccceeeeeEEcCcCceEEEEEcCC
Confidence 011223346677888764 36899999
Q ss_pred CeEEEEcC-C--CCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 440 GLLLQWDP-N--GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 440 gtIklWD~-t--G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
|+|-+||+ . -.++.+..-+....+.+. +.|+.|++|...|+|.+|++.
T Consensus 464 G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 464 GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 99999998 2 244555544534444444 459999999999999999985
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=2.7e-05 Score=93.17 Aligned_cols=74 Identities=12% Similarity=-0.002 Sum_probs=52.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EE-EEeCCC--c
Q 001245 191 VSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG--G 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~D---gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~-SgS~Dg--t 263 (1115)
...+...+++|||+.|+..+.+ ..|.+||+.++. ...+....+.+.+.+|||||+ |+ +.+.++ .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------EEEccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 4578889999999999877654 368889998642 223333344566789999997 54 666666 5
Q ss_pred EEEEeCCCcc
Q 001245 264 IKIWPWEAIE 273 (1115)
Q Consensus 264 IrvWdl~t~~ 273 (1115)
|.+||+++++
T Consensus 269 Iy~~d~~~~~ 278 (430)
T PRK00178 269 IYVMDLASRQ 278 (430)
T ss_pred EEEEECCCCC
Confidence 7777887754
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.46 E-value=2.7e-05 Score=92.35 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=57.1
Q ss_pred EEcCCCc-EEEEeC-CC--eEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeeccc---EEEEEeCCCcccccccc
Q 001245 426 TTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG---IVQVLDLEGNLLGGWVA 496 (1115)
Q Consensus 426 a~S~Dg~-laSGS~-Dg--tIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DG---tIrlWD~~G~ll~~l~g 496 (1115)
.+++||. |+..+. ++ .|.+||+.+...+.+..+...+..++ ++|++|+.++.++ .|.+||+.+.....+..
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC
Confidence 4566665 544333 33 57777885444455554444444444 7899999888775 89999987433333332
Q ss_pred ccCC-EEEEEecCCEEEeecCCCceEEe
Q 001245 497 HSSP-VIKMAVGAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 497 H~~~-V~sva~dg~~laSgS~DgtIRlW 523 (1115)
+... -.+.++||++|+.++.++....+
T Consensus 364 ~~~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 364 TGLDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred CCCCCCceECCCCCEEEEEEeCCCcEEE
Confidence 2111 11345688888877666544433
No 241
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.46 E-value=6.1e-06 Score=92.11 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=107.5
Q ss_pred EEEEeCCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe--CCCe
Q 001245 137 TIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH--RDGR 214 (1115)
Q Consensus 137 ~l~~~~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS--~Dgt 214 (1115)
++.-...+|.+-=...|.++|+.+-..+.+ -+..| -+ ...+.+++++.++.+||--+ .-|.
T Consensus 92 ~VrmNr~RLvV~Lee~IyIydI~~MklLhT------------I~t~~----~n-~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 92 AVRMNRKRLVVCLEESIYIYDIKDMKLLHT------------IETTP----PN-PKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEEccceEEEEEcccEEEEecccceeehh------------hhccC----CC-ccceEeeccCCCCceEEecCCCCCce
Confidence 444446677775444599999998887765 11111 02 33577777777777777543 3478
Q ss_pred EEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCc-EEEEeCCCcceeeccCCCcceeEEEEeee
Q 001245 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKALSLKPEERHTAALIVER 292 (1115)
Q Consensus 215 IrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dgt-IrvWdl~t~~~~l~~~~~~~~~~a~~~~~ 292 (1115)
|.+||+.+ .+.+-++.+|+++|-+|+|+++|. |||||+-|| |||..+..+++..++ |
T Consensus 155 V~l~d~~n--------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF-------------R 213 (391)
T KOG2110|consen 155 VVLFDTIN--------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF-------------R 213 (391)
T ss_pred EEEEEccc--------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee-------------e
Confidence 99999875 245667889999999999999998 789999886 699999888766433 1
Q ss_pred eeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCc
Q 001245 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTR 342 (1115)
Q Consensus 293 ~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg 342 (1115)
||-. + ..+-.+++++++..|.+.++ +||.|+-+.+.
T Consensus 214 -----RG~~-----~----~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 214 -----RGTY-----P----VSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----CCce-----e----eEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 1111 0 24567888888887776664 78888887543
No 242
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.43 E-value=5.4e-05 Score=88.83 Aligned_cols=264 Identities=14% Similarity=0.079 Sum_probs=143.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCc
Q 001245 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1115)
Q Consensus 203 g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~ 282 (1115)
+..|+.++.+|.+..+|..+|+ .+.+.+-......+++.. ++.++.++.|+.+..+|.++++.........
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~--------~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK--------RLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc--------EeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCc
Confidence 5688999999999999987642 222222222111233332 4568888899999999998887653221100
Q ss_pred ceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEE-ecc
Q 001245 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRV-DMS 361 (1115)
Q Consensus 283 ~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v-~~s 361 (1115)
. .. ...+ . .++..++...++.+..||+++|+.+..+.......... ..+
T Consensus 136 -----------------~-----~~---~~p~----v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s 185 (377)
T TIGR03300 136 -----------------E-----VL---SPPL----V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSAS 185 (377)
T ss_pred -----------------e-----ee---cCCE----E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence 0 00 0111 1 12333444456789999999999887765433211000 000
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-cccccCC--C---ceE-EEEEcCCCcEE
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFGDDN--R---RTE-ALTTSIDGMIW 434 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g~l~~h~--~---~V~-aVa~S~Dg~la 434 (1115)
| ...++ . .++.. .++...+.-...+-.+|... +...+.. . .+. +..+ .++.++
T Consensus 186 p----~~~~~-~-v~~~~-------------~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy 245 (377)
T TIGR03300 186 P----VIADG-G-VLVGF-------------AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVY 245 (377)
T ss_pred C----EEECC-E-EEEEC-------------CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEE
Confidence 0 00000 0 00100 00111111111222333221 0000000 0 010 1111 356788
Q ss_pred EEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccccccccc-CCEEEEEecCCEE
Q 001245 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-SPVIKMAVGAGYI 511 (1115)
Q Consensus 435 SGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~-~~V~sva~dg~~l 511 (1115)
.++.+|.+..||. +|+.+-..... .....+.++.+|+.++.||.|..+|.. |+.+-....-. ..+.+....+..+
T Consensus 246 ~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l 323 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYL 323 (377)
T ss_pred EEEcCCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEE
Confidence 8889999999999 89877555421 222334578899999999999999986 87654432211 1223334567899
Q ss_pred EeecCCCceEEeeecC
Q 001245 512 FTLANHGGIRGWNVTS 527 (1115)
Q Consensus 512 aSgS~DgtIRlWdl~~ 527 (1115)
+.++.||.|.+||..+
T Consensus 324 ~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 324 VVGDFEGYLHWLSRED 339 (377)
T ss_pred EEEeCCCEEEEEECCC
Confidence 9999999999999765
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.42 E-value=5e-06 Score=88.73 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=82.1
Q ss_pred CCceEEEEEcCCCCEE--EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeC---CCcE
Q 001245 191 VSSVMCMVGDEASGVV--WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~L--aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~---DgtI 264 (1115)
.++|.+++++|+|..+ ++|..++.|.+||+.+ +.+.++ +..+++.|.|||+|+ |+.|+. .|.|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 4579999999999985 4566888999999974 344555 456889999999998 666654 4679
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-------CCeEEEE
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------FLSFALW 337 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-------d~tI~lW 337 (1115)
.+||+++.+.+.+. .| ..+..++.+|+|..++++. |..++||
T Consensus 128 ~~wd~~~~~~i~~~--------------------~~-----------~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 128 EFWDVRKKKKISTF--------------------EH-----------SDATDVEWSPDGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred EEEECCCCEEeecc--------------------cc-----------CcEEEEEEcCCCCEEEEEEeccceeccccEEEE
Confidence 99999865543111 11 2345667788888777653 5679999
Q ss_pred EcCCccEEEE
Q 001245 338 DARTRELLKV 347 (1115)
Q Consensus 338 D~~tg~ll~t 347 (1115)
+. +|+++..
T Consensus 177 ~~-~G~~l~~ 185 (194)
T PF08662_consen 177 SF-QGRLLYK 185 (194)
T ss_pred Ee-cCeEeEe
Confidence 97 5776654
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.41 E-value=1.9e-06 Score=91.90 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=81.5
Q ss_pred CceEEEEEcCCCc-E--EEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeec---ccEEEEEeCC-Ccc
Q 001245 420 RRTEALTTSIDGM-I--WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYM---NGIVQVLDLE-GNL 490 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-l--aSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~---DGtIrlWD~~-G~l 490 (1115)
+.|.+++++|+|. + ++|..++.|.|||++++.+.++. ...++.|. |+|++|+.|+. .|.|.+||++ .+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 4589999999986 4 45667889999999998888885 45677777 89999999874 4789999997 566
Q ss_pred ccccccccCCEEEEE--ecCCEEEeecC------CCceEEeeec
Q 001245 491 LGGWVAHSSPVIKMA--VGAGYIFTLAN------HGGIRGWNVT 526 (1115)
Q Consensus 491 l~~l~gH~~~V~sva--~dg~~laSgS~------DgtIRlWdl~ 526 (1115)
+.+.. |. .++.++ +||++++|++. |+.++||++.
T Consensus 138 i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 138 ISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 66654 33 356666 58999998753 8999999985
No 245
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=3.5e-05 Score=92.82 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCc--
Q 001245 191 VSSVMCMVGDEASGVVWSGHRD-G--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGG-- 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~D-g--tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~Dgt-- 263 (1115)
...+.+.+|+|||+.|+-.+.+ + .|.+||+.++. ...+..-.+...+.+|||||+ | ++.+.++.
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---------~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---------REKVTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---------eEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 4577889999999998877653 3 58888887632 122222233445789999998 6 46777776
Q ss_pred EEEEeCCCcc
Q 001245 264 IKIWPWEAIE 273 (1115)
Q Consensus 264 IrvWdl~t~~ 273 (1115)
|.+||+++++
T Consensus 288 Iy~~dl~tg~ 297 (448)
T PRK04792 288 IYVVDIATKA 297 (448)
T ss_pred EEEEECCCCC
Confidence 6666776653
No 246
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=2.7e-05 Score=93.26 Aligned_cols=95 Identities=18% Similarity=0.112 Sum_probs=53.6
Q ss_pred EEEcCCCc-EEEEeC-CCeEEEEcC--CCCeeEEe--ecCCCcEEEEEecCCEEEeeeccc---EEEEEeCCCccccccc
Q 001245 425 LTTSIDGM-IWTGGA-NGLLLQWDP--NGNRLQDF--QYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWV 495 (1115)
Q Consensus 425 Va~S~Dg~-laSGS~-DgtIklWD~--tG~~l~tl--~gH~~~V~sla~dG~~LaSGs~DG---tIrlWD~~G~ll~~l~ 495 (1115)
..++|||+ |+..+. ++...||.+ .+...+.+ .++...-.++.|||++|+..+.++ .|.+||+.+.....+.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 45788887 554443 466777754 34333333 222121234458999998776543 7999998732223333
Q ss_pred cc-cCCEEEEEecCCEEEeecCCCc
Q 001245 496 AH-SSPVIKMAVGAGYIFTLANHGG 519 (1115)
Q Consensus 496 gH-~~~V~sva~dg~~laSgS~Dgt 519 (1115)
.+ ...-.+.++||++|+.++.++.
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCC
Confidence 22 1222234568998887765543
No 247
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=98.39 E-value=6.9e-06 Score=89.94 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=38.9
Q ss_pred ccCceeeeeeee--eccccccCcceEEEEEEEe-cEEEEEEeecccccchhHHHHHHHHHHHHHh
Q 001245 657 YVGDVDVAAVPC--GFGRAIGNKGAVGLRVRVY-DRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1115)
Q Consensus 657 ~i~~v~~~~v~t--G~~g~~gNKGaV~ir~~i~-~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1115)
.|.+|..-.++. |+. -.|++-+.+... +..|-+||.||.=. -+.|-++...|...
T Consensus 101 pi~~v~~~~lp~~~~~~----~Rgal~a~~~~~~g~~l~V~~~HL~l~---~~~R~~Q~~~L~~~ 158 (259)
T COG3568 101 PIRDVENLALPDPTGLE----PRGALLAEIELPGGKPLRVINAHLGLS---EESRLRQAAALLAL 158 (259)
T ss_pred cccchhhccCCCCCCCC----CceeEEEEEEcCCCCEEEEEEEecccc---HHHHHHHHHHHHhh
Confidence 345555555543 442 369999999884 77999999999833 25688888888773
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.38 E-value=3.2e-05 Score=85.66 Aligned_cols=300 Identities=14% Similarity=0.141 Sum_probs=156.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC------------CCEEEEEEeCCCc---E
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYGD---L 255 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~------------~~V~sVafSpdG~---L 255 (1115)
..-+.|+.|+..|.+||||..+|.|.++.-+... .....-...++.|. ..|..+.+.+++. +
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~---~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLY---KGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccc---ccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 3467899999999999999999999999755311 00112223456663 4588888888774 3
Q ss_pred EEEeCCCcEEEEeCCCcceee---ccCCC--cceeEEEEeeeeeeeeccccee-----cce-eeeecCCeEEEEEeCCCC
Q 001245 256 WSGSEGGGIKIWPWEAIEKAL---SLKPE--ERHTAALIVERSYIDLRSHLSV-----NGF-SSILTSDIKNLLSDHSRA 324 (1115)
Q Consensus 256 ~SgS~DgtIrvWdl~t~~~~l---~~~~~--~~~~~a~~~~~~~~~l~~h~~~-----~~~-~~~~s~~v~~las~~~~~ 324 (1115)
+-...|+|||+|-+....... .+..+ ...+..+ +. ..+..|... -.+ .......+..+....+..
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l---r~-p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL---RL-PVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCcccee---ec-eeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 455679999999875421111 00000 0000000 00 000001000 000 111224566777788889
Q ss_pred EEEeecCCeEEEEEcCC-ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecccc--ceEEe
Q 001245 325 KVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR--NAIMG 401 (1115)
Q Consensus 325 ~v~S~sd~tI~lWD~~t-g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~--~~~~G 401 (1115)
.+.|+.|..|.||++.- .++. +-|++-|..- ++-+ ...++-.|+|..- .+.+.
T Consensus 178 t~lSADdLRINLWnlei~d~sF----------nIVDIKP~nm---EeLt-----------eVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSF----------NIVDIKPANM---EELT-----------EVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eEeeccceeeeeccccccCCce----------eEEEccccCH---HHHH-----------HHHhhhccCHhHccEEEEec
Confidence 99999999999999752 1111 1222222100 0000 0001112222211 12233
Q ss_pred ccCcEEEEeccc---------------------ccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC--CCCeeEEeecC
Q 001245 402 AADAVRRVAAKG---------------------GFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYL 458 (1115)
Q Consensus 402 s~d~v~~~~~~g---------------------~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~--tG~~l~tl~gH 458 (1115)
+.+.+++-+-.. -|.+-...|..|.|+.+|+.+-.-.=-+||+||+ +.+++.++.-|
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeeh
Confidence 334444433210 0111224577788999998433222369999999 57788887776
Q ss_pred CC------------cEE---EEE--ecCCEEEeeecccEEEEEeCC-C-ccccccccccCC--EEEEEecCCEEEeecCC
Q 001245 459 PF------------AVQ---CLC--TFGSQIWVGYMNGIVQVLDLE-G-NLLGGWVAHSSP--VIKMAVGAGYIFTLANH 517 (1115)
Q Consensus 459 ~~------------~V~---sla--~dG~~LaSGs~DGtIrlWD~~-G-~ll~~l~gH~~~--V~sva~dg~~laSgS~D 517 (1115)
.. .|. .++ -+++++++|+.....+++++. | +...++.+-... +.++ ...+.+.+++..
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~-~k~~~V~~~g~r 392 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV-LKLRLVSSSGKR 392 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc-ccceeeecCCCc
Confidence 43 221 112 345699999999999999975 4 333444443332 1111 123455555555
Q ss_pred CceEE
Q 001245 518 GGIRG 522 (1115)
Q Consensus 518 gtIRl 522 (1115)
....+
T Consensus 393 ~~~~~ 397 (433)
T KOG1354|consen 393 KRDEI 397 (433)
T ss_pred ccccc
Confidence 44333
No 249
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.37 E-value=8.8e-07 Score=100.80 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=94.1
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccc
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~ 493 (1115)
...|..+-|-|--. |++++..|-++--|+ +|+.+..+....+.+..++ |-...+-.|...|+|.+|..+ -+.+..
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 34566666767666 688999999999999 8999998888777777777 778899999999999999987 578888
Q ss_pred cccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 494 WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 494 l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+..|.++|.+|++ +|+|+||.|.|..++|||++.
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 9999999999996 689999999999999999864
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=5.3e-07 Score=103.42 Aligned_cols=205 Identities=17% Similarity=0.293 Sum_probs=127.8
Q ss_pred EEeecCCCCEEEEEEeC-CCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCC
Q 001245 235 LSWQAHRGPVLSLCISS-YGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (1115)
Q Consensus 235 ~~l~GH~~~V~sVafSp-dG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~ 313 (1115)
..+.||+..|..++--. ...++|+|.|+|||+|.+..-. ++....+ .......|. ..
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg-------D~~~tsa-----CQfTY~aHk----------k~ 786 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG-------DEIGTSA-----CQFTYQAHK----------KP 786 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc-------Cccccce-----eeeEhhhcc----------Cc
Confidence 35789999999986544 3459999999999999986410 1110000 011223333 23
Q ss_pred eEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeec
Q 001245 314 IKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ 393 (1115)
Q Consensus 314 v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~ 393 (1115)
+..+.+-.+.+.++|+ |+.|.+||.--|+++... ++.+ +.
T Consensus 787 i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~--------------------~dap--------k~----------- 826 (1034)
T KOG4190|consen 787 IHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQM--------------------EDAP--------KE----------- 826 (1034)
T ss_pred ccceeeeeccceeeec-cCcceeecccccchhHhh--------------------hcCc--------cc-----------
Confidence 3334443344445444 577999997655544211 0000 00
Q ss_pred cccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEE-eCCCeEEEEcC-CCCeeEEeec-----CCCcEEEE
Q 001245 394 RSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG-GANGLLLQWDP-NGNRLQDFQY-----LPFAVQCL 465 (1115)
Q Consensus 394 ~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSG-S~DgtIklWD~-tG~~l~tl~g-----H~~~V~sl 465 (1115)
|+.+.++.+. +-|.. +..| +...|||+.|. .++..-.++- -..-+.++
T Consensus 827 -------~a~~~ikcl~-----------------nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 827 -------GAGGNIKCLE-----------------NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred -------CCCceeEecc-----------------cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 0001111111 11222 3344 67889999998 6765555442 23456777
Q ss_pred E--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE-ecCCEEEeecCCCceEE-eee
Q 001245 466 C--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA-VGAGYIFTLANHGGIRG-WNV 525 (1115)
Q Consensus 466 a--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva-~dg~~laSgS~DgtIRl-Wdl 525 (1115)
+ +.|..||.|-++|+|-+.|.. |+.+.+|+.-..-...++ +.++.+++...|.++-+ |-.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehh
Confidence 7 679999999999999999986 999999988777666666 67888998888999988 864
No 251
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.32 E-value=1.1e-06 Score=101.38 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=66.6
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc-CCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCW 218 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~la~s~dg~~LaSGS~DgtIrlW 218 (1115)
+++.+| +.|+.+||+|..+...+.. ++- .+..+||.+||||++|++|+.|..|-||
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~---------------------mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGV---------------------MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHH---------------------HHhhccceEEEEEcCCccEEEecCCcceEEEE
Confidence 667776 8999999999987765542 121 5689999999999999999999999999
Q ss_pred ECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC
Q 001245 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS 251 (1115)
Q Consensus 219 dl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp 251 (1115)
++..+ +.+..-+||+.+|+.|+|.|
T Consensus 360 Sf~er--------RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEER--------RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred Eeccc--------eEEEeccccccceeeEeecc
Confidence 99852 34555689999999999983
No 252
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.26 E-value=0.00016 Score=84.71 Aligned_cols=293 Identities=14% Similarity=0.150 Sum_probs=145.9
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
..++.|.|.|.++...... .+.+ ...-..++|++||++++..++||+|-++|+.+.
T Consensus 13 ~~~~~v~viD~~t~~~~~~------------------i~~~--~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---- 68 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVAR------------------IPTG--GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG---- 68 (369)
T ss_dssp GGGTEEEEEETTT-SEEEE------------------EE-S--TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS----
T ss_pred cCCCEEEEEECCCCeEEEE------------------EcCC--CCceeEEEecCCCCEEEEEcCCCeEEEEECCcc----
Confidence 4688999999988765543 1111 122234778999999999999999999999873
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCc-EE-EEeCCCcEEEEeCCCcceeeccCC-------CcceeEEEEee--ee-e-
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGGGIKIWPWEAIEKALSLKP-------EERHTAALIVE--RS-Y- 294 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~-L~-SgS~DgtIrvWdl~t~~~~l~~~~-------~~~~~~a~~~~--~~-~- 294 (1115)
+.+.+.+.-.+ -.++++|+||+ ++ +.-.++++.++|.++.+....+.. .+...+++... +. +
T Consensus 69 ----~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV 143 (369)
T PF02239_consen 69 ----KVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV 143 (369)
T ss_dssp ----SEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred ----cEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence 34555554333 47899999998 44 666899999999998765433311 11111222110 10 1
Q ss_pred eeecccceecce----------eee-ecCCeEEEEEeCCCCEEEee--cCCeEEEEEcCCccEEEEEecCCcee-e-EEe
Q 001245 295 IDLRSHLSVNGF----------SSI-LTSDIKNLLSDHSRAKVWSA--GFLSFALWDARTRELLKVFNIDGQIE-N-RVD 359 (1115)
Q Consensus 295 ~~l~~h~~~~~~----------~~~-~s~~v~~las~~~~~~v~S~--sd~tI~lWD~~tg~ll~tl~~~~~~~-~-~v~ 359 (1115)
+.++.-..+.-+ ... .........++++++.+..+ ..+.|.++|+.++++...+....... . ...
T Consensus 144 v~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 144 VNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp EEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred EEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence 111110100000 000 11223445677777765543 24678899999988876653211110 0 000
Q ss_pred c-cCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc----------CcEEEEecccccccCCCceEEEEEc
Q 001245 360 M-SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA----------DAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 360 ~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~----------d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
+ ++. .-.+|......... ...+|.. .-++.+.. .... .-+..+
T Consensus 224 ~php~---------~g~vw~~~~~~~~~----------~~~ig~~~v~v~d~~~wkvv~~I~~------~G~g-lFi~th 277 (369)
T PF02239_consen 224 FPHPG---------FGPVWATSGLGYFA----------IPLIGTDPVSVHDDYAWKVVKTIPT------QGGG-LFIKTH 277 (369)
T ss_dssp EEETT---------TEEEEEEEBSSSSE----------EEEEE--TTT-STTTBTSEEEEEE-------SSSS---EE--
T ss_pred ccCCC---------cceEEeecccccee----------cccccCCccccchhhcCeEEEEEEC------CCCc-ceeecC
Confidence 0 000 00112111110000 0011110 00111111 1111 345678
Q ss_pred CCCc-EEEE----eCCCeEEEEcC-CCCeeEEeecCCC-cEEEEE--ecCCEEEeeec--ccEEEEEeCC-Cccccccc
Q 001245 429 IDGM-IWTG----GANGLLLQWDP-NGNRLQDFQYLPF-AVQCLC--TFGSQIWVGYM--NGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 429 ~Dg~-laSG----S~DgtIklWD~-tG~~l~tl~gH~~-~V~sla--~dG~~LaSGs~--DGtIrlWD~~-G~ll~~l~ 495 (1115)
||+. +|.. ...++|.++|. +-+.+.++....+ .+.-+. +||++++.+.. +|.|.++|.. .+++..+.
T Consensus 278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 8887 7665 44589999999 6677777754333 355555 68998887654 3479999976 56655544
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.26 E-value=5.3e-06 Score=106.54 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=75.4
Q ss_pred eCCCeEEEEcC--CC--CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEecCC
Q 001245 437 GANGLLLQWDP--NG--NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAG 509 (1115)
Q Consensus 437 S~DgtIklWD~--tG--~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~dg~ 509 (1115)
+.++.+.+||. .+ .+++ ++|.+.+++++ |.-+.|+||+.+|.|+|||+. .+++.+|++ +. --.
T Consensus 2312 ~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~ 2381 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TRE 2381 (2439)
T ss_pred CCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhh
Confidence 34689999997 33 4566 78999999988 788999999999999999997 567777765 11 345
Q ss_pred EEEeecCCCceEEeeecCCCCCchhhHHHhhccccccc
Q 001245 510 YIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYT 547 (1115)
Q Consensus 510 ~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt 547 (1115)
++++|+..|.||||++..++-+....-+. .+...|.
T Consensus 2382 ~f~~~ss~g~ikIw~~s~~~ll~~~p~e~--ak~gfFr 2417 (2439)
T KOG1064|consen 2382 YFVTGSSEGNIKIWRLSEFGLLHTFPSEH--AKQGFFR 2417 (2439)
T ss_pred eeeccCcccceEEEEccccchhhcCchhh--cccchhh
Confidence 78999999999999999887665444333 3444333
No 254
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.25 E-value=2.3e-06 Score=66.19 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=33.9
Q ss_pred cceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 232 GEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 232 ~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
+.+.++++|.++|++|+|+|++. |+|||.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34678999999999999999987 79999999999997
No 255
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.23 E-value=0.00054 Score=90.43 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=142.7
Q ss_pred EEEEe--CCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE-EEEeC
Q 001245 137 TIVCT--EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHR 211 (1115)
Q Consensus 137 ~l~~~--~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L-aSGS~ 211 (1115)
.++.+ ++.+|.+ ..+.|++||......... +..+-.|-.+ -++.. .. ......|+++++++.| ++-..
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~i----g~~g~~G~~d-G~~~~-a~-f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQI----GSTGEEGLRD-GSFED-AT-FNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEE----ccCCCcCCCC-Cchhc-cc-cCCCcEEEEeCCCCEEEEEeCC
Confidence 34554 5677773 677999999864432111 1111111000 00111 00 2234568999987755 44455
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeec--C---------------CCCEEEEEEeC-CCcE-EEEeCCCcEEEEeCCCc
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQA--H---------------RGPVLSLCISS-YGDL-WSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~G--H---------------~~~V~sVafSp-dG~L-~SgS~DgtIrvWdl~t~ 272 (1115)
.+.|+.+|+.++. +.++.| . -..-..|+|+| +|.| ++.+.+++|++||..++
T Consensus 645 n~~Ir~id~~~~~---------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 645 NHALREIDFVNET---------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred CceEEEEecCCCE---------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 6789999987632 222211 0 11235899999 5565 68888999999999775
Q ss_pred ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee--cCCeEEEEEcCCccEEEEEec
Q 001245 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDARTRELLKVFNI 350 (1115)
Q Consensus 273 ~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~--sd~tI~lWD~~tg~ll~tl~~ 350 (1115)
... .+..+.. . ....++....... .....+++++++..|+.+ .++.|++||+.++.......+
T Consensus 716 ~v~-~~~G~G~-~---------~~~~g~~~~~~~~----~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 716 VTR-VFSGDGY-E---------RNLNGSSGTSTSF----AQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred eEE-EEecCCc-c---------ccCCCCccccccc----cCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 332 1111000 0 0000000000000 122457778877755543 357899999988764221111
Q ss_pred CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC
Q 001245 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (1115)
Q Consensus 351 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D 430 (1115)
+... +.. . ..| |..++.. .. ........++++++
T Consensus 781 ~~~~------~~~---------l---------------~~f---------G~~dG~g---~~----~~l~~P~Gvavd~d 814 (1057)
T PLN02919 781 DPTF------SDN---------L---------------FKF---------GDHDGVG---SE----VLLQHPLGVLCAKD 814 (1057)
T ss_pred cccc------Ccc---------c---------------ccc---------cCCCCch---hh----hhccCCceeeEeCC
Confidence 1000 000 0 000 0000000 00 01122456888999
Q ss_pred CcE-EEEeCCCeEEEEcCCCCeeEEeecCC--------------CcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 431 GMI-WTGGANGLLLQWDPNGNRLQDFQYLP--------------FAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 431 g~l-aSGS~DgtIklWD~tG~~l~tl~gH~--------------~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
|.+ ++-+.+++|++||.++..+.++.+.. .....|+ ++|+.+++-+.+++|++||++
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 885 56677899999999554444443321 1344455 678877777788999999986
No 256
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=0.00031 Score=78.49 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=101.3
Q ss_pred cccc-eeeEEEEEeCC---eEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-C
Q 001245 129 TQIG-CFLRTIVCTEE---QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-S 203 (1115)
Q Consensus 129 ~~~~-~~l~~l~~~~~---~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g 203 (1115)
+.|. ..||-++=|.- -.+++.|.+||++|-.. .++. ...+.. ...|.||++-|. +
T Consensus 94 t~ws~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt------------------~Lks~s-QrnvtclawRPlsa 153 (445)
T KOG2139|consen 94 TLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPT------------------KLKSVS-QRNVTCLAWRPLSA 153 (445)
T ss_pred hhhhhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCc------------------eecchh-hcceeEEEeccCCc
Confidence 4544 56666666531 11236788999999665 3332 122233 457999999997 4
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCC------CCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCCcEEEEeCCCccee
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDS------DDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~------~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~DgtIrvWdl~t~~~~ 275 (1115)
+-|+-|..-| |.+|..+....++ .+...++..-.|| .+|++|.+.+||. |+++| .|..|+|||++++.+.
T Consensus 154 selavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 154 SELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred ceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc
Confidence 4566666655 8999876411111 1111122333567 7999999999997 77777 4679999999997654
Q ss_pred eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEc
Q 001245 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (1115)
Q Consensus 276 l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~ 339 (1115)
- ++- ... +-+..|..+|++..++.+. |.+++||..
T Consensus 232 p--------------------L~~-~gl--------gg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 232 P--------------------LIP-KGL--------GGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred c--------------------ccc-cCC--------CceeeEEEcCCCCEEEEecccceeeeehh
Confidence 1 100 001 2344677788888888876 788999953
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.22 E-value=6.5e-06 Score=105.75 Aligned_cols=213 Identities=19% Similarity=0.243 Sum_probs=136.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee-cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~-GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~ 270 (1115)
.|.|+.--|---.-.||+.||.||+|....+ ..+.+|+ +-...|+.+.|+..|. ..-+-.||.+-+|...
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCC--------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 4677777777778899999999999998753 2355553 2348899999999986 6566779999999985
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec----CCeEEEEEcCCccEEE
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG----FLSFALWDARTRELLK 346 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s----d~tI~lWD~~tg~ll~ 346 (1115)
.. .+...+-|.. ...+.+.++ ..+++++ ++.+.+||.-
T Consensus 2282 pk--------------------~~~s~qchnk-------~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl------ 2323 (2439)
T KOG1064|consen 2282 PK--------------------PYTSWQCHNK-------ALSDFRFIG-----SLLATAGRSSDNRNVCLWDTL------ 2323 (2439)
T ss_pred Cc--------------------ceeccccCCc-------cccceeeee-----hhhhccccCCCCCcccchhcc------
Confidence 21 1111122220 013344443 1223332 2467788731
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
..+... . + -..|...+++++
T Consensus 2324 --~~~~~s------------------------------------------~-----------v-----~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2324 --LPPMNS------------------------------------------L-----------V-----HTCHDGGATVLA 2343 (2439)
T ss_pred --cCcccc------------------------------------------e-----------e-----eeecCCCceEEE
Confidence 000000 0 0 023556677888
Q ss_pred EcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCCC-ccccccc---cccCC
Q 001245 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEG-NLLGGWV---AHSSP 500 (1115)
Q Consensus 427 ~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~G-~ll~~l~---gH~~~ 500 (1115)
+.|.-+ ++||+.+|.|++||+ .-++++++.. +- .-.++.+|+..|+|+||++++ .++.++. +|++.
T Consensus 2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf 2415 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF 2415 (2439)
T ss_pred EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch
Confidence 888877 689999999999999 5667777654 11 346899999999999999873 5666654 34442
Q ss_pred --EEE--EEe-cCCEEEeecCCCc
Q 001245 501 --VIK--MAV-GAGYIFTLANHGG 519 (1115)
Q Consensus 501 --V~s--va~-dg~~laSgS~Dgt 519 (1115)
++. +.. ...+|+|++.|++
T Consensus 2416 Fr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2416 FRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred hhhcCceeeeccCceEEEecCCCC
Confidence 111 222 3568999999875
No 258
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.22 E-value=3.8e-05 Score=88.93 Aligned_cols=146 Identities=13% Similarity=0.051 Sum_probs=102.1
Q ss_pred cccceEEeccCc-EEEEecccc----cccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC--CCCeeEEeecCCCcEEEE
Q 001245 394 RSRNAIMGAADA-VRRVAAKGG----FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQYLPFAVQCL 465 (1115)
Q Consensus 394 ~~~~~~~Gs~d~-v~~~~~~g~----l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~--tG~~l~tl~gH~~~V~sl 465 (1115)
++.-+++...|+ ++.|.-.|- +......|.|+++.|+.. ++- +.-+.+.|=.+ +.+. -..++|.+-|.|+
T Consensus 115 dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~n~k~-i~WkAHDGiiL~~ 192 (737)
T KOG1524|consen 115 DGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAANSKI-IRWRAHDGLVLSL 192 (737)
T ss_pred CCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE-ecCCeEEEeecccccce-eEEeccCcEEEEe
Confidence 343344444454 455554443 344556899999999876 432 22344555455 3444 4578999999999
Q ss_pred E--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEEecCCEEEeecCCCceEEeeecCCCCCchhhHHHhhccc
Q 001245 466 C--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKE 543 (1115)
Q Consensus 466 a--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~dg~~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re 543 (1115)
. +....|+||++|-..+|||.-|+.+.+-..|.-+|++|++.+..++..+..++.| +.
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R---~~----------------- 252 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR---FS----------------- 252 (737)
T ss_pred ecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeee---ec-----------------
Confidence 8 6789999999999999999999999999999999999998766666555566666 22
Q ss_pred cccceecccceEEEEEEeCCCC
Q 001245 544 FLYTRMENLKILAGTWNVGQGR 565 (1115)
Q Consensus 544 ~~yt~~~~irI~v~TWNv~~~~ 565 (1115)
.++-=.||-..|-..|.+
T Consensus 253 ----~p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 253 ----SPRVGSIFNLSWSADGTQ 270 (737)
T ss_pred ----CCCccceEEEEEcCCCce
Confidence 233337888888776543
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.20 E-value=0.0004 Score=91.62 Aligned_cols=256 Identities=14% Similarity=0.096 Sum_probs=142.9
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee--------------cCCCCEEEEEEeCCCc-EE-EE
Q 001245 196 CMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------------AHRGPVLSLCISSYGD-LW-SG 258 (1115)
Q Consensus 196 ~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~--------------GH~~~V~sVafSpdG~-L~-Sg 258 (1115)
-+++|++ |.+.++-+..+.|++||.++.. +..+. ++-..-..|+|++++. |+ +-
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~---------i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF---------IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE---------EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 5888874 6788888999999999987521 11111 1222357899999876 54 55
Q ss_pred eCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEE-Eee-cCCeEEE
Q 001245 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-WSA-GFLSFAL 336 (1115)
Q Consensus 259 S~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v-~S~-sd~tI~l 336 (1115)
...+.|+++|+.++... ++...... .....+- ..+..... ..-..+++++.+..+ ++. +...|++
T Consensus 643 t~n~~Ir~id~~~~~V~-tlag~G~~---------g~~~~gg--~~~~~~~l-n~P~gVa~dp~~g~LyVad~~~~~I~v 709 (1057)
T PLN02919 643 TENHALREIDFVNETVR-TLAGNGTK---------GSDYQGG--KKGTSQVL-NSPWDVCFEPVNEKVYIAMAGQHQIWE 709 (1057)
T ss_pred CCCceEEEEecCCCEEE-EEeccCcc---------cCCCCCC--hhhhHhhc-CCCeEEEEecCCCeEEEEECCCCeEEE
Confidence 56688999998765321 11000000 0000000 00000000 112356777744444 343 3578999
Q ss_pred EEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccc
Q 001245 337 WDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1115)
Q Consensus 337 WD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~ 416 (1115)
||..+|... ++.+++...+ .. |... ..
T Consensus 710 ~d~~~g~v~-~~~G~G~~~~--------------------~~----------------------g~~~----------~~ 736 (1057)
T PLN02919 710 YNISDGVTR-VFSGDGYERN--------------------LN----------------------GSSG----------TS 736 (1057)
T ss_pred EECCCCeEE-EEecCCcccc--------------------CC----------------------CCcc----------cc
Confidence 998877642 3433221100 00 0000 00
Q ss_pred cCCCceEEEEEcCCCc-E-EEEeCCCeEEEEcC-CCCeeEEeec--------------C--------CCcEEEEE--ecC
Q 001245 417 DDNRRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGNRLQDFQY--------------L--------PFAVQCLC--TFG 469 (1115)
Q Consensus 417 ~h~~~V~aVa~S~Dg~-l-aSGS~DgtIklWD~-tG~~l~tl~g--------------H--------~~~V~sla--~dG 469 (1115)
........|++++||. | ++-+.++.|++||+ +|... .+.+ + -..-..|+ ++|
T Consensus 737 ~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG 815 (1057)
T PLN02919 737 TSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG 815 (1057)
T ss_pred ccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC
Confidence 0112345688888875 5 45666789999998 44321 1110 0 00112444 678
Q ss_pred CEEEeeecccEEEEEeCCCcccccccc--------------ccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 470 SQIWVGYMNGIVQVLDLEGNLLGGWVA--------------HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 470 ~~LaSGs~DGtIrlWD~~G~ll~~l~g--------------H~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
...++-+.+++|++||.++..+.++.| +......|++ +|+.+++-+.+++||+||+.+
T Consensus 816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 816 QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 888888889999999987444333322 2224455654 788888889999999999865
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.18 E-value=5.1e-06 Score=93.71 Aligned_cols=99 Identities=17% Similarity=0.208 Sum_probs=77.7
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
|....+.+|.+..+.+.. . -+| .+.++.|+++||++.|.|+.+|..||+=....-
T Consensus 129 gD~~~~di~s~~~~~~~~------------------~--lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---- 183 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEP------------------I--LGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---- 183 (390)
T ss_pred CCceeeeeecccccCcch------------------h--hhh-hhhhheeeecCCCCEEEEecCCceEEEEecCcc----
Confidence 566688888877643221 1 145 788999999999999999999999999776531
Q ss_pred CCCCcceEEe-ecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCccee
Q 001245 228 DDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 228 ~~~~~~~~~l-~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~ 275 (1115)
+ -+..| -||+..|..|++.++-.|+|||-|+|||+||+.+++++
T Consensus 184 ---f-~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 184 ---F-VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ---c-chhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 1 12233 69999999999999766899999999999999998765
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.00011 Score=85.88 Aligned_cols=274 Identities=15% Similarity=0.172 Sum_probs=155.8
Q ss_pred cCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCc-----------ceeEEEEeeeeeeeecccceecc
Q 001245 239 AHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEE-----------RHTAALIVERSYIDLRSHLSVNG 305 (1115)
Q Consensus 239 GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~-----------~~~~a~~~~~~~~~l~~h~~~~~ 305 (1115)
+|...-+.|..||||+ |+||----.||++|+......+.-+.+. -.-.+++.....+.+ |...+-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief--Hak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF--HAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeee--hhhcCe
Confidence 6788889999999998 5688888899999997643222111111 112222222223333 211111
Q ss_pred e--eeeecCCeEEEEEeCCCCEEEe-ecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCcc--ccccceEEEEecC
Q 001245 306 F--SSILTSDIKNLLSDHSRAKVWS-AGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA--MEDEFKTKIVTSS 380 (1115)
Q Consensus 306 ~--~~~~s~~v~~las~~~~~~v~S-~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~--~~~~~~~~~~~~~ 380 (1115)
+ ..+| ...+.++....++-+.. ++...|.-.++..|..|.-|..++..++.+.+.+..... ...+..+.+|+..
T Consensus 127 hy~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeecC-cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 1 1111 12234444433343444 344678889999999999887776666666655432211 1222334444322
Q ss_pred CCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC
Q 001245 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL 458 (1115)
Q Consensus 381 ~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH 458 (1115)
.+... |.-+..-.+. ..........|+++.|+.||. ++.|..+|.|-|||+ +.+++.. ..|
T Consensus 206 ~ksrv---------------~~l~~~~~v~-s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh 268 (703)
T KOG2321|consen 206 DKSRV---------------GTLDAASSVN-SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDH 268 (703)
T ss_pred hhhhh---------------eeeecccccC-CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-ccc
Confidence 11100 0000000000 011122334699999999997 899999999999999 5555432 334
Q ss_pred C--CcEEEEEe---c-CCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE--ecCCEEEeecCCCceEEeeecCCC
Q 001245 459 P--FAVQCLCT---F-GSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 459 ~--~~V~sla~---d-G~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~p~ 529 (1115)
. -+|..+.. + +..|+|. ....++|||-. |+.......-. .+..+. +++.++++|-.+.-|-.+-+..-|
T Consensus 269 ~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 269 GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred CCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 4 46777772 2 3456555 45689999975 87766655433 355554 588889998877777777666656
Q ss_pred CCchh
Q 001245 530 PLDSI 534 (1115)
Q Consensus 530 pld~~ 534 (1115)
|.-.|
T Consensus 347 PaPrW 351 (703)
T KOG2321|consen 347 PAPRW 351 (703)
T ss_pred CCchh
Confidence 65333
No 262
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=98.16 E-value=1.7e-05 Score=88.06 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=26.6
Q ss_pred eEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccC
Q 001245 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~ 594 (1115)
+-|.||||++.......+..||.. .+||| |+|||+..
T Consensus 1 mri~t~Ni~g~~~~~~~~~~~l~~--~~~DI--i~LQE~~~ 37 (254)
T TIGR00195 1 MKIISWNVNGLRARLHKGLAWLKE--NQPDV--LCLQETKV 37 (254)
T ss_pred CEEEEEEcCcHHHhHHHHHHHHHh--cCCCE--EEEEeccc
Confidence 358999999866555567778864 35676 45999865
No 263
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=9.5e-05 Score=81.49 Aligned_cols=170 Identities=13% Similarity=0.142 Sum_probs=112.5
Q ss_pred ccCCCccccccceeeEEEEEeCCeEEEeCCCCEEEEeCC-CCcccccccccccccCCCCCCCCCceeeeccCCceEEEEE
Q 001245 121 VKPHPLRETQIGCFLRTIVCTEEQLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG 199 (1115)
Q Consensus 121 ~~~~~l~~~~~~~~l~~l~~~~~~l~ag~D~tvrvWdl~-tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~ 199 (1115)
+.-.++.|-.-...++++.-...++.+--++.|.||... +.+..++ .++......++|+.-
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~------------------~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHV------------------IETRSNPKGLCSLCP 144 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheee------------------eecccCCCceEeecC
Confidence 333444454445556666666788888889999999976 3333332 111100112333332
Q ss_pred cCCCCEE-EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCc-EEEEeCCCcceee
Q 001245 200 DEASGVV-WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG-IKIWPWEAIEKAL 276 (1115)
Q Consensus 200 s~dg~~L-aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dgt-IrvWdl~t~~~~l 276 (1115)
..+..+| +-|-.-|.|++-|+..... .......+|...|.||+++-+|. +||||.-|| |||||..+++++.
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~ 218 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKP------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ 218 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCc------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence 2233333 3566779999999975211 12356789999999999999998 689998886 8999999988764
Q ss_pred ccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCC
Q 001245 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (1115)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~t 341 (1115)
++ | ||-. ..++-+++++++...|+.++| +|+.|+.++.
T Consensus 219 E~-------------R-----RG~d---------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 219 EL-------------R-----RGVD---------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ee-------------e-----cCCc---------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 32 1 1111 156889999999999988887 6888888754
No 264
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=98.08 E-value=7.4e-05 Score=82.93 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=26.7
Q ss_pred EEEEEEeCCCCCCc-hhhhccccCCCCCceeEEEEEecccC
Q 001245 555 LAGTWNVGQGRASQ-DALISWLGSAASDVGIVVVGLQEVEM 594 (1115)
Q Consensus 555 ~v~TWNv~~~~~~~-~~L~~wl~~~~~~~Di~viGlQEi~~ 594 (1115)
-|+|||||+-+... ..+..||.. .+||| |+|||+-+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~--~~~DI--iclQEtK~ 38 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNS--VDADV--FCIQESKM 38 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHh--cCCCE--EEEEeecc
Confidence 58999999876544 358889974 45675 78999854
No 265
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.08 E-value=0.0021 Score=76.16 Aligned_cols=314 Identities=12% Similarity=0.092 Sum_probs=158.2
Q ss_pred EEeCCeEEEe-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCce-EEEEEcCCCCEEEEEeCCCeEE
Q 001245 139 VCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSV-MCMVGDEASGVVWSGHRDGRIM 216 (1115)
Q Consensus 139 ~~~~~~l~ag-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V-~~la~s~dg~~LaSGS~DgtIr 216 (1115)
+..++.++++ .++.+.-+|.++|....+.. +. ... .+....++ ..+ ..+++ ++..|+-|+.+|.+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~---~~-----~~~-~~~~~~~~-~~~~~~~~v--~~~~v~v~~~~g~l~ 133 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVD---LS-----EKD-GWFSKNKS-ALLSGGVTV--AGGKVYIGSEKGQVY 133 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEc---CC-----Ccc-cccccccc-cccccccEE--ECCEEEEEcCCCEEE
Confidence 3457788874 56788888998888766310 00 000 00000000 000 01122 346677788999999
Q ss_pred EEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
.+|.++|+ ...+.+-. +.+.+--.-.++.++.++.|+.|...|.++++...........+ .
T Consensus 134 ald~~tG~--------~~W~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~----------~ 194 (394)
T PRK11138 134 ALNAEDGE--------VAWQTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL----------T 194 (394)
T ss_pred EEECCCCC--------CcccccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc----------c
Confidence 99998753 22222211 22222111225667778889999999999987664432110000 0
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCce----e---eEEeccCCCCcccc
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQI----E---NRVDMSLLPDFAME 369 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~----~---~~v~~s~~~~~~~~ 369 (1115)
+++. ..++ .. ++..++..+++.+...|+.+|+.+..+...... . ..+..+| .+.
T Consensus 195 ~~~~----------~sP~----v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP----~v~ 255 (394)
T PRK11138 195 LRGE----------SAPA----TA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP----VVV 255 (394)
T ss_pred ccCC----------CCCE----EE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCc----EEE
Confidence 0000 0111 11 123334444567888888888876554211100 0 0000000 000
Q ss_pred ccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-C
Q 001245 370 DEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-N 448 (1115)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-t 448 (1115)
++ . ++ ....++...+.-...+-.+|... + .....++. .++.|+.++.||.+...|. +
T Consensus 256 ~~-~--vy------------~~~~~g~l~ald~~tG~~~W~~~--~----~~~~~~~~-~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 256 GG-V--VY------------ALAYNGNLVALDLRSGQIVWKRE--Y----GSVNDFAV-DGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred CC-E--EE------------EEEcCCeEEEEECCCCCEEEeec--C----CCccCcEE-ECCEEEEEcCCCeEEEEECCC
Confidence 00 0 00 00011111111122223344321 1 11111222 3567888889999999999 7
Q ss_pred CCeeEEeecCC-CcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE-EEecCCEEEeecCCCceEEee
Q 001245 449 GNRLQDFQYLP-FAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 449 G~~l~tl~gH~-~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s-va~dg~~laSgS~DgtIRlWd 524 (1115)
|+.+=....-. ....+.+..+.+|+.++.||.|.+.|.+ |+.+....-+...+.+ ..+.+..|+-++.||.+..++
T Consensus 314 G~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 87653221101 1122222357788999999999999986 8887666543333443 334556888889999887765
No 266
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.08 E-value=1.5e-05 Score=94.84 Aligned_cols=222 Identities=14% Similarity=0.167 Sum_probs=125.7
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
..++|-|.-.+ .+|+++.. +.+. ....+.||..+|+.+-|.|... |+++|.|-.|-.||+.+...-+
T Consensus 83 ~wiVsts~qka-iiwnlA~s---s~~a--Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----- 151 (1081)
T KOG0309|consen 83 YWIVSTSNQKA-IIWNLAKS---SSNA--IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----- 151 (1081)
T ss_pred eeEEecCcchh-hhhhhhcC---Cccc--eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce-----
Confidence 45666555544 48998752 1122 2345689999999999998653 7899999999999997632110
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCc-cEEEEEecCCceeeEEec
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR-ELLKVFNIDGQIENRVDM 360 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg-~ll~tl~~~~~~~~~v~~ 360 (1115)
+....-|. ..+.|+.-.- +...+++...+.|.+||++.| ..+.+++++-.
T Consensus 152 ------------ys~~~w~s--------~asqVkwnyk--~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs------- 202 (1081)
T KOG0309|consen 152 ------------YSTSSWRS--------AASQVKWNYK--DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVS------- 202 (1081)
T ss_pred ------------eeeecccc--------cCceeeeccc--CcchhhhccCCceEEEeccCCCcceEEecccce-------
Confidence 00000000 0122222221 223444544567999998865 34544433211
Q ss_pred cCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC--CCcEEEEeC
Q 001245 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI--DGMIWTGGA 438 (1115)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~--Dg~laSGS~ 438 (1115)
.|+.+.|.. -+.+++.+.
T Consensus 203 ------------------------------------------------------------~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 203 ------------------------------------------------------------SVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ------------------------------------------------------------eeehHHHhhhhhhhhcccCC
Confidence 111222111 124788899
Q ss_pred CCeEEEEcC-C--CCeeEEeecCCCcEEEEE--ecC--CEEE--eeec-------ccEEEEEeCC--CccccccccccCC
Q 001245 439 NGLLLQWDP-N--GNRLQDFQYLPFAVQCLC--TFG--SQIW--VGYM-------NGIVQVLDLE--GNLLGGWVAHSSP 500 (1115)
Q Consensus 439 DgtIklWD~-t--G~~l~tl~gH~~~V~sla--~dG--~~La--SGs~-------DGtIrlWD~~--G~ll~~l~gH~~~ 500 (1115)
|++||.||. . .+.-++.. -..+|+-=+ |.| .++. .|+. +..-..|++. .+.+.+|.||++.
T Consensus 223 d~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~ 301 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV 301 (1081)
T ss_pred CCceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH
Confidence 999999998 2 22222222 123444222 332 2222 1211 1122345543 3578999999998
Q ss_pred EEEEEe------cCC------EEEeecCCCceEEeeec
Q 001245 501 VIKMAV------GAG------YIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 501 V~sva~------dg~------~laSgS~DgtIRlWdl~ 526 (1115)
|....+ +|. .|+|=|.|.++|+|.+.
T Consensus 302 V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 302 VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred HHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 887531 222 59999999999999885
No 267
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.00096 Score=79.84 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=37.0
Q ss_pred eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCC---CcEEEEeCCCcce
Q 001245 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG---GGIKIWPWEAIEK 274 (1115)
Q Consensus 214 tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~D---gtIrvWdl~t~~~ 274 (1115)
.|.++|.+++ ....+..|...+.+.+|||||+ |+..+.+ ..|.+||+++++.
T Consensus 180 ~l~~~d~~g~---------~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~ 235 (430)
T PRK00178 180 TLQRSDYDGA---------RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR 235 (430)
T ss_pred EEEEECCCCC---------CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE
Confidence 4777777752 2345667788999999999997 6554433 3688899987643
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.0014 Score=77.22 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=86.6
Q ss_pred CCceEEEEEcCCCc---EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeec---ccEEEEEeCC-Cc
Q 001245 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYM---NGIVQVLDLE-GN 489 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~---laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~---DGtIrlWD~~-G~ 489 (1115)
.+.|.++.++++|+ ++-|-.=.++-|+|+.|+++..|-.. +=+++- |.|.+|+.++. -|.|.+||+. -+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg--pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG--PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC--CccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 57899999999996 45677788999999999999888543 444444 78999998875 4899999986 67
Q ss_pred cccccccccCCEEEEEecCCEEEeecC------CCceEEeeec
Q 001245 490 LLGGWVAHSSPVIKMAVGAGYIFTLAN------HGGIRGWNVT 526 (1115)
Q Consensus 490 ll~~l~gH~~~V~sva~dg~~laSgS~------DgtIRlWdl~ 526 (1115)
++..+.+-...+..-.+||++++|+.. |+.||||+..
T Consensus 348 ~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 348 LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 889998877777777789999988753 8999999986
No 269
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.99 E-value=1e-05 Score=62.45 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=27.0
Q ss_pred CCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 449 GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 449 G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
|++++++.+|..+|++|+ +++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356777777777777777 5677777777777777776
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.97 E-value=0.011 Score=68.60 Aligned_cols=104 Identities=7% Similarity=-0.026 Sum_probs=64.4
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EE-EEe---------CCCcEEEEeCCCcceeeccCCC
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGS---------EGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~-SgS---------~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
++|-+-|.++. +.+.++..-..+-. + +||||+ |+ +.+ .+..|.+||+++.+....+...
T Consensus 27 ~~v~ViD~~~~--------~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAG--------RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCC--------EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence 88999998863 22333432222222 4 999998 64 556 6899999999997655322111
Q ss_pred cc-eeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec---CCeEEEEEcCCccEEEEEe
Q 001245 282 ER-HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 282 ~~-~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s---d~tI~lWD~~tg~ll~tl~ 349 (1115)
+. ++ .. + ..-..++.++++..++.+. +..+.+.|+.+++.+..+.
T Consensus 97 ~~p~~--------------~~---~------~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 97 EGPRF--------------LV---G------TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred CCchh--------------hc---c------CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 10 00 00 0 1123456677777776443 5789999999999998764
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00013 Score=86.03 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=90.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe--ecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeecc
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL 278 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l--~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~ 278 (1115)
|-.+|+=|-.-|.|-+.++..+. ....+ -.|-+.|+++..+.+-. |+|++.|+.+..|+...+...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~--------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~--- 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGE--------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII--- 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCe--------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee---
Confidence 45578889999999999988642 22334 36999999998776644 899999999999998664322
Q ss_pred CCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEE
Q 001245 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRV 358 (1115)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v 358 (1115)
+. +......+..++.++++..+.+++ .+|++||+.+++.+.+|.+|+.++.++
T Consensus 138 -------------~~-------------~~~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 138 -------------RI-------------WKEQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred -------------ee-------------eccCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEE
Confidence 00 001113455677777777766654 789999999999999999999987766
Q ss_pred eccC
Q 001245 359 DMSL 362 (1115)
Q Consensus 359 ~~s~ 362 (1115)
.|..
T Consensus 191 ~f~~ 194 (541)
T KOG4547|consen 191 SFTT 194 (541)
T ss_pred EEEE
Confidence 6644
No 272
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.91 E-value=0.022 Score=66.27 Aligned_cols=245 Identities=10% Similarity=0.135 Sum_probs=131.2
Q ss_pred CceEEEEEcCCCCEEEEEeC----CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCCcEE
Q 001245 192 SSVMCMVGDEASGVVWSGHR----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~----DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~DgtIr 265 (1115)
.....|++++++++|++... +|.|-.|+++.... .+..+.+...-...-..|+++|+|+ |+.+. .+|+|-
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g----~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG----TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT----EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc----eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 34556889999999999987 57999999875210 1122222322334556899999998 55554 699999
Q ss_pred EEeCCC-cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCc
Q 001245 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (1115)
Q Consensus 266 vWdl~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg 342 (1115)
++++.. +.... . .......++.... ..-......++.+++++..++... ...|.++++...
T Consensus 113 v~~l~~~g~l~~-----------~---~~~~~~~g~g~~~--~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 113 VFPLDDDGSLGE-----------V---VQTVRHEGSGPNP--DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp EEEECTTSEEEE-----------E---EEEEESEEEESST--TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred EEEccCCcccce-----------e---eeecccCCCCCcc--cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 999976 32210 0 0000011110000 000113456788899988887754 467888888665
Q ss_pred c--EEE--EEec-CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec--------------c
Q 001245 343 E--LLK--VFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA--------------A 403 (1115)
Q Consensus 343 ~--ll~--tl~~-~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs--------------~ 403 (1115)
. +.. .+.. .+.--..+.|++ +++.+.... .
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~p-------------------------------dg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSP-------------------------------DGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-T-------------------------------TSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceEEEeeccccccCCCCcEEEEcC-------------------------------CcCEEEEecCCCCcEEEEeecccC
Confidence 4 322 1110 111011223333 322222111 1
Q ss_pred CcEEEEeccccc---ccCCCceEEEEEcCCCc-EE-EEeCCCeEEEEcCC---CC--eeEEeecCCCcEEEEE--ecCCE
Q 001245 404 DAVRRVAAKGGF---GDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDPN---GN--RLQDFQYLPFAVQCLC--TFGSQ 471 (1115)
Q Consensus 404 d~v~~~~~~g~l---~~h~~~V~aVa~S~Dg~-la-SGS~DgtIklWD~t---G~--~l~tl~gH~~~V~sla--~dG~~ 471 (1115)
+....+..-..+ .........|+++|||+ |+ +--.+++|-+++++ |. .++.+......-..++ ++|++
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 111111111111 01112567799999998 44 55567899999982 43 3344444334456666 79999
Q ss_pred EEeee-cccEEEEEeCC
Q 001245 472 IWVGY-MNGIVQVLDLE 487 (1115)
Q Consensus 472 LaSGs-~DGtIrlWD~~ 487 (1115)
|+++. .+++|.+|+++
T Consensus 306 l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 306 LYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEETTTTEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEe
Confidence 99887 56799999863
No 273
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.89 E-value=0.0032 Score=68.38 Aligned_cols=96 Identities=21% Similarity=0.408 Sum_probs=64.1
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCc----E-------EEEEecCCEEEeeeccc-EEEEEeCC-Cccccccc
Q 001245 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFA----V-------QCLCTFGSQIWVGYMNG-IVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~----V-------~sla~dG~~LaSGs~DG-tIrlWD~~-G~ll~~l~ 495 (1115)
++.++.+..++.|..+|+ +|+.+-....+... + ..+...+..++.++.+| .+.+ |++ |+.+ |.
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~--w~ 198 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKL--WS 198 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEE--EE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEE--EE
Confidence 345777777899999998 89887776654422 1 12223333777777777 4666 987 6644 43
Q ss_pred cccCCEEE-EEecCCEEEeecCCCceEEeeecCC
Q 001245 496 AHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 496 gH~~~V~s-va~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.....+.. +..++..|+.++.|+.|..||+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 199 KPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECSS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecCCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 33333454 5678888888889999999998774
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.86 E-value=0.00015 Score=80.48 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=71.5
Q ss_pred EEeCCCeEEEEcC---CCCeeEEeecCCCcEEEEEec--CCEEEeeecccEEEEEeCCCc--cccccccccCCEEEEE--
Q 001245 435 TGGANGLLLQWDP---NGNRLQDFQYLPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGN--LLGGWVAHSSPVIKMA-- 505 (1115)
Q Consensus 435 SGS~DgtIklWD~---tG~~l~tl~gH~~~V~sla~d--G~~LaSGs~DGtIrlWD~~G~--ll~~l~gH~~~V~sva-- 505 (1115)
.|-..|.|.+-.+ .-.++.++.+|.+.|++++.| .++|.||++|..|-+||+-|+ ....+.||...|..+.
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 3444444444433 346788999999999999954 579999999999999998753 4567889999999876
Q ss_pred ecCCEEEeecCCCceEEeee
Q 001245 506 VGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 506 ~dg~~laSgS~DgtIRlWdl 525 (1115)
..-+.++|++.||.|-+|+.
T Consensus 250 ~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhheeeeeccCCCeEEEEec
Confidence 34578999999999999984
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.86 E-value=0.0003 Score=76.99 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC------------CCEEEEEEeCCC-c--E
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------GPVLSLCISSYG-D--L 255 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~------------~~V~sVafSpdG-~--L 255 (1115)
...+++|.|+..|.+||+|...|.|.++.-+.... -..+....|++|. ..|..|.+-.++ + +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~---ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG---CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc---cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 45788999999999999999999999997653110 0112223477774 347777766554 3 4
Q ss_pred EEEeCCCcEEEEeCCC
Q 001245 256 WSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 256 ~SgS~DgtIrvWdl~t 271 (1115)
+-...|+|||+|.+..
T Consensus 103 LlstNdktiKlWKiye 118 (460)
T COG5170 103 LLSTNDKTIKLWKIYE 118 (460)
T ss_pred EEecCCceeeeeeeec
Confidence 4555799999998753
No 276
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.85 E-value=0.00081 Score=74.36 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCcEEEEeCC---CeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccc
Q 001245 421 RTEALTTSIDGMIWTGGAN---GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (1115)
Q Consensus 421 ~V~aVa~S~Dg~laSGS~D---gtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~ 495 (1115)
.+.-++||+|.+.+.--.| +.+.+||+....+.+.--...+|.+.. |.-.+|+.......+.+|...|-..-.-.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 3556899999985433344 479999995555554444455787777 44567777777777999998873222222
Q ss_pred cccCCEEEEEe--cCCEEEeecCCCc
Q 001245 496 AHSSPVIKMAV--GAGYIFTLANHGG 519 (1115)
Q Consensus 496 gH~~~V~sva~--dg~~laSgS~Dgt 519 (1115)
+-.-.|.++.. +|..++-.+.|.-
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCce
Confidence 22245777773 7888888888853
No 277
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00081 Score=76.07 Aligned_cols=150 Identities=12% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCeEEEe-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCC--CeEEE
Q 001245 142 EEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRD--GRIMC 217 (1115)
Q Consensus 142 ~~~l~ag-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~D--gtIrl 217 (1115)
++.|.++ ++|.+++|..+.+..- ..+...--- ..++..|.-.+ .-.++|+|+.. ..+++
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~h----------------ss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLH----------------SSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccc----------------cccceeeec-CCceeeeccCCCCCceEecCchhcccceee
Confidence 5555554 6778899988755421 112222111 23444444444 35678889999 89999
Q ss_pred EECCCCCCCCCCCCcceEEeecCC-----------CCEEEEEEeCC--C-cEEEEeCCCcEEEEeCCCcceeeccCCCcc
Q 001245 218 WKMNARLLDSDDGFGEVLSWQAHR-----------GPVLSLCISSY--G-DLWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l~GH~-----------~~V~sVafSpd--G-~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~ 283 (1115)
||+++. .+.|++.. -+++++.|.+. . +++++..=+.+|++|...+..-
T Consensus 178 wdle~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP-------- 239 (412)
T KOG3881|consen 178 WDLEQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP-------- 239 (412)
T ss_pred eecccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc--------
Confidence 999862 44566531 23678889876 3 4899999999999999765332
Q ss_pred eeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 284 ~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
.+.+ ++. ...+.++...+++..|..+. .+.+..+|+++++++.
T Consensus 240 -V~~f-------d~~------------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 240 -VAQF-------DFL------------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG 283 (412)
T ss_pred -eeEe-------ccc------------cCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence 1111 111 13455666666666666654 3567778877776653
No 278
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.0018 Score=78.20 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=35.7
Q ss_pred eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCC--cEEEEeCCCcce
Q 001245 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGG--GIKIWPWEAIEK 274 (1115)
Q Consensus 214 tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~Dg--tIrvWdl~t~~~ 274 (1115)
.|.++|.++. ....+..+..++.+.+|||||+ |+-.+ .++ .|.+||+.+++.
T Consensus 199 ~l~i~d~dG~---------~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~ 254 (448)
T PRK04792 199 QLMIADYDGY---------NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR 254 (448)
T ss_pred EEEEEeCCCC---------CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe
Confidence 5677787752 1345566788999999999997 65433 343 578888877643
No 279
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.82 E-value=0.00088 Score=74.09 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=136.7
Q ss_pred CCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE
Q 001245 241 RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (1115)
Q Consensus 241 ~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las 319 (1115)
.++|+|.||++|++ ++.+-...-|-|+.......- +. .-.+..|. ..+..+..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w-----~~-----------~htls~Hd----------~~vtgvdW 63 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-----EP-----------AHTLSEHD----------KIVTGVDW 63 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc-----ee-----------ceehhhhC----------cceeEEee
Confidence 56999999999997 676767778888877553210 00 01122232 44556666
Q ss_pred eCCCCEEEeec-CCeEEEEEcC-CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccc
Q 001245 320 DHSRAKVWSAG-FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (1115)
Q Consensus 320 ~~~~~~v~S~s-d~tI~lWD~~-tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~ 397 (1115)
++...+|++++ |..-.||... .|+--.++
T Consensus 64 ap~snrIvtcs~drnayVw~~~~~~~Wkptl------------------------------------------------- 94 (361)
T KOG1523|consen 64 APKSNRIVTCSHDRNAYVWTQPSGGTWKPTL------------------------------------------------- 94 (361)
T ss_pred cCCCCceeEccCCCCccccccCCCCeeccce-------------------------------------------------
Confidence 77777777765 5666777752 11111111
Q ss_pred eEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCCCC-----eeEEeecCCCcEEEEE--ecC
Q 001245 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPNGN-----RLQDFQYLPFAVQCLC--TFG 469 (1115)
Q Consensus 398 ~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~-----~l~tl~gH~~~V~sla--~dG 469 (1115)
.+..+.+...+|.++|.+. +|+||.-+.|-+|=.+++ ..++=+.+...|+++. +.+
T Consensus 95 ----------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 95 ----------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ----------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 1233445566788888765 899999999999987543 1223345677899999 788
Q ss_pred CEEEeeecccEEEEEeC----------------C---CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 470 SQIWVGYMNGIVQVLDL----------------E---GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 470 ~~LaSGs~DGtIrlWD~----------------~---G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
-+||.||.|+..||+.. + |+++..+..--++|..+.+ +|..|+=.++|.++-+=|...|
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999999998851 1 4467777666789999986 5999999999999999887766
Q ss_pred CC
Q 001245 529 GP 530 (1115)
Q Consensus 529 ~p 530 (1115)
.+
T Consensus 239 ~~ 240 (361)
T KOG1523|consen 239 SE 240 (361)
T ss_pred ch
Confidence 54
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.79 E-value=0.0023 Score=69.42 Aligned_cols=228 Identities=14% Similarity=0.191 Sum_probs=124.6
Q ss_pred CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCC
Q 001245 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDD 229 (1115)
Q Consensus 150 D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~ 229 (1115)
+++|..||+.+|..+... .+.. +.....+.++ ++++.|+.++.++.|..||..+|
T Consensus 2 ~g~l~~~d~~tG~~~W~~---------------~~~~---~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG------ 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY---------------DLGP---GIGGPVATAV-PDGGRVYVASGDGNLYALDAKTG------ 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEE---------------ECSS---SCSSEEETEE-EETTEEEEEETTSEEEEEETTTS------
T ss_pred CCEEEEEECCCCCEEEEE---------------ECCC---CCCCccceEE-EeCCEEEEEcCCCEEEEEECCCC------
Confidence 678999999999877640 0000 0111121122 24677888899999999999764
Q ss_pred CCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeee
Q 001245 230 GFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI 309 (1115)
Q Consensus 230 ~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~ 309 (1115)
+...+..- .+.+.......++.++.++.|+.|..+|..+++........ ... .....
T Consensus 57 --~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~-----------------~~~-~~~~~-- 113 (238)
T PF13360_consen 57 --KVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT-----------------SSP-PAGVR-- 113 (238)
T ss_dssp --EEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE------------------SSC-TCSTB--
T ss_pred --CEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeeccc-----------------ccc-ccccc--
Confidence 23333322 22221112444556777778899999999988765331000 000 00000
Q ss_pred ecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCcccee
Q 001245 310 LTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSS 388 (1115)
Q Consensus 310 ~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1115)
... ..+.. +..++.+. ++.|..+|+++|+.+..+...... . ..
T Consensus 114 --~~~-~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~--------~--------------------~~--- 157 (238)
T PF13360_consen 114 --SSS-SPAVD--GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR--------G--------------------SS--- 157 (238)
T ss_dssp ----S-EEEEE--TTEEEEEETCSEEEEEETTTTEEEEEEESSTT---------S--------------------S----
T ss_pred --ccc-CceEe--cCEEEEEeccCcEEEEecCCCcEEEEeecCCCC--------C--------------------Cc---
Confidence 000 11111 34444443 688999999999988766431100 0 00
Q ss_pred eeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCe-EEEEcC-CCCeeEEeecCCCcEEE-E
Q 001245 389 FGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGL-LLQWDP-NGNRLQDFQYLPFAVQC-L 465 (1115)
Q Consensus 389 v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~Dgt-IklWD~-tG~~l~tl~gH~~~V~s-l 465 (1115)
.+. ......+-.+..++.++.++.++. +.+ |. +|+.+-... ...+.. .
T Consensus 158 -~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~~ 208 (238)
T PF13360_consen 158 -PIS-------------------------SFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSLP 208 (238)
T ss_dssp --EE-------------------------EETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECECE
T ss_pred -cee-------------------------eecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCCc
Confidence 000 000011111112346666677774 666 98 777553222 233444 5
Q ss_pred EecCCEEEeeecccEEEEEeCC-Ccc
Q 001245 466 CTFGSQIWVGYMNGIVQVLDLE-GNL 490 (1115)
Q Consensus 466 a~dG~~LaSGs~DGtIrlWD~~-G~l 490 (1115)
..+|..|++++.+++|..||++ |+.
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 5789999999999999999987 664
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.79 E-value=6.2e-05 Score=85.16 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=77.3
Q ss_pred EEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC-cccccc-ccccCCEEEEEe-cC
Q 001245 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG-NLLGGW-VAHSSPVIKMAV-GA 508 (1115)
Q Consensus 435 SGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G-~ll~~l-~gH~~~V~sva~-dg 508 (1115)
.++.+..+.+|.. .|.+. .+-||-..++.|+ +|+++|.++..|+.|||-...+ -.+.+| -||++-|..++. ++
T Consensus 127 kagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 3455677888887 45544 4458999999998 8999999999999999987653 344554 489999999995 77
Q ss_pred CEEEeecCCCceEEeeecCCCCC
Q 001245 509 GYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 509 ~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
+.|+|+|.|+|+|+||+.++..+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcc
Confidence 78899999999999999886555
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.034 Score=63.01 Aligned_cols=268 Identities=12% Similarity=0.166 Sum_probs=145.3
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD---GRIMCWKMNARLL 225 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D---gtIrlWdl~~~~~ 225 (1115)
....|.+|++.+...... .+ +.+...+.+.=|+++++++.|.++-.+ |.|-.+.++...+
T Consensus 14 ~s~gI~v~~ld~~~g~l~---------------~~--~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G 76 (346)
T COG2706 14 ESQGIYVFNLDTKTGELS---------------LL--QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG 76 (346)
T ss_pred CCCceEEEEEeCcccccc---------------hh--hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC
Confidence 467999999985432211 01 111114566779999999999999766 7788887774211
Q ss_pred CCCCCCcceEEeecC----CCCEEEEEEeCCCc-EEEEe-CCCcEEEEeCCC-cceeeccCCCcceeEEEEeeeeeeeec
Q 001245 226 DSDDGFGEVLSWQAH----RGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLR 298 (1115)
Q Consensus 226 ~~~~~~~~~~~l~GH----~~~V~sVafSpdG~-L~SgS-~DgtIrvWdl~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~ 298 (1115)
.+++..+ ..+-+-|+++++|+ |++++ .-|.|.+..+.. |... .. +...
T Consensus 77 --------~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-~~----------------v~~~ 131 (346)
T COG2706 77 --------RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-PV----------------VQVV 131 (346)
T ss_pred --------eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccc-cc----------------eeee
Confidence 2233222 12338899999998 66665 458999999865 3211 00 0001
Q ss_pred ccceecceeeeecCCeEEEEEeCCCCEEEeecC--CeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEE
Q 001245 299 SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1115)
Q Consensus 299 ~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd--~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~ 376 (1115)
.|..-.....-.++.+.+..+.+++..|+...- ..|.++++..|.+-..-...
T Consensus 132 ~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~------------------------- 186 (346)
T COG2706 132 KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE------------------------- 186 (346)
T ss_pred ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-------------------------
Confidence 111000000000123556667888888887653 45889999877754321000
Q ss_pred EecCCCCccceeeeeeccccceEEec--cCcEEEEecc---c-------------ccccCCCceEEEEEcCCCcEEEEeC
Q 001245 377 VTSSKKDKAQSSFGFFQRSRNAIMGA--ADAVRRVAAK---G-------------GFGDDNRRTEALTTSIDGMIWTGGA 438 (1115)
Q Consensus 377 ~~~~~~~~~~~~v~f~~~~~~~~~Gs--~d~v~~~~~~---g-------------~l~~h~~~V~aVa~S~Dg~laSGS~ 438 (1115)
+ +.+.+.+.+.|.++++.+..-. ...|..|..+ | .|. ...+..+|.+++||+.+-+|.
T Consensus 187 v---~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~-g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 187 V---KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT-GTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred c---CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC-CCCceeEEEECCCCCEEEEec
Confidence 0 1111223344555544333221 1223333221 1 111 124566788999999655554
Q ss_pred --CCeEEEEcC--CCCeeEEeec---CCC--cEEEEEecCCEEEeeec-ccEEEEEeCC
Q 001245 439 --NGLLLQWDP--NGNRLQDFQY---LPF--AVQCLCTFGSQIWVGYM-NGIVQVLDLE 487 (1115)
Q Consensus 439 --DgtIklWD~--tG~~l~tl~g---H~~--~V~sla~dG~~LaSGs~-DGtIrlWD~~ 487 (1115)
...|-++.+ +|..|..... |.. .=-.++++|++|+++.. +.+|.++-++
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 336777766 4544443322 222 22345578999988885 4568888764
No 283
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=97.78 E-value=0.00037 Score=85.47 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=42.1
Q ss_pred EEEEEeecccccchhHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEec
Q 001245 690 IMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLG 769 (1115)
Q Consensus 690 ~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~G 769 (1115)
.||++|.||..+.+.-.-|..+...|++.+.=-. + ...-.+|++|
T Consensus 418 ~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~------------------------------~-----~~~~PvIlcG 462 (606)
T PLN03144 418 LLCVANTHIHANQELKDVKLWQVHTLLKGLEKIA------------------------------A-----SADIPMLVCG 462 (606)
T ss_pred EEEEEEeeeccCCccchhHHHHHHHHHHHHHHHh------------------------------h-----cCCCceEEec
Confidence 6999999997776655567777777777652000 0 0012589999
Q ss_pred ccccccCCCChHHHHHHHhhcCh
Q 001245 770 DFNYRLDGITYDEARDFISQRCF 792 (1115)
Q Consensus 770 DlNyRi~~~~~~~v~~~i~~~~~ 792 (1115)
|||-- +...+-+++.++..
T Consensus 463 DFNS~----P~S~vy~lLt~G~v 481 (606)
T PLN03144 463 DFNSV----PGSAPHCLLATGKV 481 (606)
T ss_pred cCCCC----CCChhhhhhhcCCc
Confidence 99964 44567777776653
No 284
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.71 E-value=0.0062 Score=73.09 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=40.6
Q ss_pred EEEEEcCCCc-EEEEeC-C--CeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeec---ccEEEEEeCCCc
Q 001245 423 EALTTSIDGM-IWTGGA-N--GLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYM---NGIVQVLDLEGN 489 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~-D--gtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~---DGtIrlWD~~G~ 489 (1115)
...++||||+ |+..+. + ..|.+||+ +|++ +.+..+...+.+.. +||++|+..+. .+.|.+||+++.
T Consensus 330 ~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 330 SCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred cceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3456889887 554333 2 46999999 5554 34443333334343 89998875432 457888998744
No 285
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=97.71 E-value=0.00058 Score=64.88 Aligned_cols=95 Identities=21% Similarity=0.357 Sum_probs=69.3
Q ss_pred CCceeeccCcEEecc-----ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeC
Q 001245 932 IPETIVSTNNIIIQN-----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIK 1006 (1115)
Q Consensus 932 ~p~~~~~~~~i~~~~-----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~ 1006 (1115)
+|...+++..|+|++ ...+.|+|+|+|.. ++.|++... + .....+.++|..|.|.
T Consensus 1 ~P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~-p~~f~v~~~-----~--------------~~~~~~~v~~~~g~l~ 60 (102)
T PF14874_consen 1 VPTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSI-PARFRVRQP-----E--------------SLSSFFSVEPPSGFLA 60 (102)
T ss_pred CCEEEEeCCEEEeeEEccCCEEEEEEEEEECCCC-CEEEEEEeC-----C--------------cCCCCEEEECCCCEEC
Confidence 366677777777764 55788999999998 999998631 0 0236789999999999
Q ss_pred CCCeeEEEEEEeeccchHhHhcCCCCCCcccCcCcceeEEEEEEEecccccceeeEEEeeee
Q 001245 1007 PDRTAEMSVHHEDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRYSTETRNHRIRVRHC 1068 (1115)
Q Consensus 1007 p~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Lvl~v~~~~~~~~~~h~i~v~~~ 1068 (1115)
||+++++.+++.-. ....+.+..|++..+|+ .-.|+|+-|
T Consensus 61 PG~~~~~~V~~~~~----------------~~~g~~~~~l~i~~e~~------~~~i~v~a~ 100 (102)
T PF14874_consen 61 PGESVELEVTFSPT----------------KPLGDYEGSLVITTEGG------SFEIPVKAE 100 (102)
T ss_pred CCCEEEEEEEEEeC----------------CCCceEEEEEEEEECCe------EEEEEEEEE
Confidence 99999999997511 11334577788888885 456676643
No 286
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.00044 Score=81.12 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=103.5
Q ss_pred EEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC
Q 001245 146 WAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL 225 (1115)
Q Consensus 146 ~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~ 225 (1115)
++|+...|.-.|++-|.-+. ||. .. ++.++++.+++-.++|+.|..||.+-.||......
T Consensus 150 ~~gsg~evYRlNLEqGrfL~-----------------P~~--~~-~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 150 LVGSGSEVYRLNLEQGRFLN-----------------PFE--TD-SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred EeecCcceEEEEcccccccc-----------------ccc--cc-cccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 34556677777888777665 332 22 56899999999999999999999999999875221
Q ss_pred CCCCCCcceEEeecCCC-----CEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc
Q 001245 226 DSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1115)
Q Consensus 226 ~~~~~~~~~~~l~GH~~-----~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~ 299 (1115)
-+ .+........|.+ .|++|.|+.+|- ++-|..+|.|-++|+.+.+.++. ..
T Consensus 210 v~--~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~--------------------kd 267 (703)
T KOG2321|consen 210 VG--TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV--------------------KD 267 (703)
T ss_pred he--eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee--------------------cc
Confidence 00 0000011223433 499999999995 78999999999999988655421 22
Q ss_pred cceecceeeeecCCeEEEEEe--CCCCEEEeecCCeEEEEEcCCccEEEEEe
Q 001245 300 HLSVNGFSSILTSDIKNLLSD--HSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 300 h~~~~~~~~~~s~~v~~las~--~~~~~v~S~sd~tI~lWD~~tg~ll~tl~ 349 (1115)
|. ..-+++.+... .+..+|+|.....++|||-.+|+......
T Consensus 268 h~--------~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 268 HG--------YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred cC--------CccceeeecccccCCCceEEecchHHhhhcccccCCceeecc
Confidence 22 01233344432 23567778777789999999998765543
No 287
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.0012 Score=73.88 Aligned_cols=96 Identities=14% Similarity=0.246 Sum_probs=63.3
Q ss_pred CceEEEEEcCCCc-EEEEeC-CCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccc
Q 001245 420 RRTEALTTSIDGM-IWTGGA-NGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-laSGS~-DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~ 493 (1115)
..|+++...+||. ++++|- |..|.|||+ +|.++....-..+.+.-+. |||.+|..+.-|++.+||+.. ..-...
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER 275 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence 5688999999998 566555 678999999 6766554433344554444 899999999999999999754 211223
Q ss_pred cccccCCEEEEE--ecCCEE-Eeec
Q 001245 494 WVAHSSPVIKMA--VGAGYI-FTLA 515 (1115)
Q Consensus 494 l~gH~~~V~sva--~dg~~l-aSgS 515 (1115)
|.--++.|..-. ++|++| ++.+
T Consensus 276 w~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 276 WILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred eeccCCceeeeeecCCCCEEEEEEc
Confidence 333344555433 466653 3444
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.59 E-value=0.01 Score=69.36 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCc---EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEEecCCEEEeeecc---cEEEEEeCCCc--c
Q 001245 419 NRRTEALTTSIDGM---IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---GIVQVLDLEGN--L 490 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~---laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla~dG~~LaSGs~D---GtIrlWD~~G~--l 490 (1115)
.+.|...+++|++. +++|-.+.++-++|+.|++...+......-....|.+++++.++.| |.|.+||..|+ +
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 56788899988875 5677889999999998886665543332222334788999988765 78999998875 4
Q ss_pred ccccccccCCEEEEEecCCEEEee--c----CCCceEEeeecC
Q 001245 491 LGGWVAHSSPVIKMAVGAGYIFTL--A----NHGGIRGWNVTS 527 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~dg~~laSg--S----~DgtIRlWdl~~ 527 (1115)
+..+.|-...+..-.+||+++.++ | -|+.|+|||+..
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 456777666665566799987654 2 489999999875
No 289
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.58 E-value=0.0077 Score=72.27 Aligned_cols=104 Identities=12% Similarity=-0.001 Sum_probs=60.9
Q ss_pred EEEEcCCCc-EEEEe-CCCeEEEEc--CC--CCeeEEeecCCCcEEEEE--ecCCEEEeeecc---cEEEEEeCCCcccc
Q 001245 424 ALTTSIDGM-IWTGG-ANGLLLQWD--PN--GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMN---GIVQVLDLEGNLLG 492 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS-~DgtIklWD--~t--G~~l~tl~gH~~~V~sla--~dG~~LaSGs~D---GtIrlWD~~G~ll~ 492 (1115)
..++||||+ |+..+ .+|...||. ++ |...+.+..+...+.+.+ |||++|+..+.+ ..|.+||+++....
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 357889987 65444 467666664 42 344455555444444444 899988876543 47999999743334
Q ss_pred ccccccCCEEEEE--ecCCEEE-eecC--CCceEEeeecC
Q 001245 493 GWVAHSSPVIKMA--VGAGYIF-TLAN--HGGIRGWNVTS 527 (1115)
Q Consensus 493 ~l~gH~~~V~sva--~dg~~la-SgS~--DgtIRlWdl~~ 527 (1115)
.+......+.+.. +||++|+ ++.. ...|.+||+..
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 4443323334443 5888776 4433 34566777653
No 290
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.57 E-value=0.00013 Score=81.06 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=85.6
Q ss_pred CCCceEEEEEcC-CCcEEEEeCCCeEEEEcC-C-----CCeeEEeecCCCcEEEEE---ecCCEEEeeecccEEEEEeCC
Q 001245 418 DNRRTEALTTSI-DGMIWTGGANGLLLQWDP-N-----GNRLQDFQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 418 h~~~V~aVa~S~-Dg~laSGS~DgtIklWD~-t-----G~~l~tl~gH~~~V~sla---~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
....|-++.|.. +..+..|+.+|.|-..|+ . |.|.+.| .|..+|+|+. +++++|.+.+.+|+|++||..
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 445566666655 556789999999999998 2 4677776 4889999988 589999999999999999975
Q ss_pred -Cc---cccccccccCCEEEE----EecCCEEEeecCCCceEEeeecC
Q 001245 488 -GN---LLGGWVAHSSPVIKM----AVGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 488 -G~---ll~~l~gH~~~V~sv----a~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
-+ -+++..||...-.-+ ......+++++.|+--|+|.+..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 34 489999996533322 23456899999999999999875
No 291
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00042 Score=75.77 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=78.8
Q ss_pred EEcCCCc-EEEEeCCCeEEEEcC-CCC--eeEEeecCCCcEEEEEe---cCCEEEeeecccEEEEEeCC--Ccccc-ccc
Q 001245 426 TTSIDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE--GNLLG-GWV 495 (1115)
Q Consensus 426 a~S~Dg~-laSGS~DgtIklWD~-tG~--~l~tl~gH~~~V~sla~---dG~~LaSGs~DGtIrlWD~~--G~ll~-~l~ 495 (1115)
-+++.++ ++++-.+|.+.+=+. .+. ..|+++.|.-..+...+ +...+++|+.||.+.-||+. ++.+- .-+
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 3555555 777777888875554 343 34589999988877663 35799999999999999986 44443 367
Q ss_pred cccCCEEEEE---ecCCEEEeecCCCceEEeeecC
Q 001245 496 AHSSPVIKMA---VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 496 gH~~~V~sva---~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
-|...|.+|. +.+.+|+|||+|.+||+||.+.
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 8999999997 3677999999999999999863
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.56 E-value=0.043 Score=63.81 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred EEEcCCCc-EEEEe----------CCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCC-EEEeee-cccEEEEEeCC-
Q 001245 425 LTTSIDGM-IWTGG----------ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGS-QIWVGY-MNGIVQVLDLE- 487 (1115)
Q Consensus 425 Va~S~Dg~-laSGS----------~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~-~LaSGs-~DGtIrlWD~~- 487 (1115)
+++++|+. ++... ..+.|.++|. +++.+..+... ..+..|+ +||+ +|++.. .+++|.+.|+.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 66777665 44321 1258999999 88888887643 3666666 7999 999887 68899999986
Q ss_pred Ccccccc
Q 001245 488 GNLLGGW 494 (1115)
Q Consensus 488 G~ll~~l 494 (1115)
++.+++.
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 7777776
No 293
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00032 Score=77.28 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhcccCCCC-ce
Q 001245 555 LAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGS-TF 633 (1115)
Q Consensus 555 ~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L~~~~-~y 633 (1115)
-+.|||||+-+.-...+.+||.. ..|| ||+|||+-.....+. + ..+. .+ |+ .|
T Consensus 2 kI~SwNVNgiRar~~~~~~~l~~--~~pD--VlclQEtK~~~~~fp----~---------------~~~~-~~--GY~~~ 55 (261)
T COG0708 2 KIASWNVNGLRARLKKLLDWLEE--EQPD--VLCLQETKAQDEQFP----R---------------EELE-AL--GYHHV 55 (261)
T ss_pred eeEEEehhhHHHHHHHHHHHHHH--hCCC--EEEEEecccCcccCC----H---------------hHHh-hC--CceEE
Confidence 47899999877655668899974 3456 578999854322110 0 0111 11 23 23
Q ss_pred EEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccc-cCcceEEEEEEEecEEEEEEeecccccch
Q 001245 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAI-GNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (1115)
Q Consensus 634 ~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~-gNKGaV~ir~~i~~t~l~FVn~HLaA~~~ 703 (1115)
..-+.+.-.|+ +++.|.... .|..|+.+.- --.=+=.|...+.+ |.++|.-+++|+.
T Consensus 56 ~~~gqKgysGV--ailsr~~~~---------~v~~g~~~~~~~d~e~R~I~a~~~~--~~v~~~Y~PnG~~ 113 (261)
T COG0708 56 FNHGQKGYSGV--AILSKKPPD---------DVRRGFPGEEEDDEEGRVIEAEFDG--FRVINLYFPNGSS 113 (261)
T ss_pred EecCcCCcceE--EEEEccCch---------hhhcCCCCCccccccCcEEEEEECC--EEEEEEEcCCCCC
Confidence 33333444454 455665443 4567776621 11112235555555 8899999999986
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.013 Score=70.50 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=64.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC-------CCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD-------DGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~-------~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
...|+++....++||-|+.||.+|+-.+++.+.+.. ..+..-++|.||.+.|.-+.++.+.+ |-|+..+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 467999999999999999999999999987654311 11222357899999999999998876 7777889999
Q ss_pred EEEeCCCc
Q 001245 265 KIWPWEAI 272 (1115)
Q Consensus 265 rvWdl~t~ 272 (1115)
-||-+-.+
T Consensus 96 iVWmlykg 103 (1189)
T KOG2041|consen 96 IVWMLYKG 103 (1189)
T ss_pred EEEeeecc
Confidence 99987553
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.39 E-value=0.12 Score=56.86 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCc-E-EEEeCCCeEEEEcC--CCCee---EEe---ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC
Q 001245 421 RTEALTTSIDGM-I-WTGGANGLLLQWDP--NGNRL---QDF---QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-l-aSGS~DgtIklWD~--tG~~l---~tl---~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G 488 (1115)
..+.+++++|+. | ++-+..+.|..+|+ .+..+ +.+ ....+..-.++ .+|.+.++....+.|.++|.+|
T Consensus 135 ~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 135 FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred cccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 456788899986 5 36666788888887 23312 222 22222245566 4576655556788999999999
Q ss_pred ccccccccccCCEEEEEec
Q 001245 489 NLLGGWVAHSSPVIKMAVG 507 (1115)
Q Consensus 489 ~ll~~l~gH~~~V~sva~d 507 (1115)
+++..+.--...++++++.
T Consensus 215 ~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 215 KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp CEEEEEE-SSSSEEEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEE
Confidence 8877766555578888873
No 296
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.39 E-value=0.24 Score=57.64 Aligned_cols=269 Identities=17% Similarity=0.229 Sum_probs=145.6
Q ss_pred EEEEeCC----CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeC----CCcEEEEeCCCcceee
Q 001245 206 VWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE----GGGIKIWPWEAIEKAL 276 (1115)
Q Consensus 206 LaSGS~D----gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~----DgtIrvWdl~t~~~~l 276 (1115)
++.|++. +.|.+|+++.... .+...... .-.....-|+++|+++ |+++.+ ++.|-.|.+....-.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g----~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG----TLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT----EEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC----CceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee
Confidence 4566666 6899998843211 01112221 1234456789999998 777665 5788888775421010
Q ss_pred ccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCC-ccEEEEE---ec
Q 001245 277 SLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART-RELLKVF---NI 350 (1115)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~t-g~ll~tl---~~ 350 (1115)
+ .+ +.....+ ..--.++.++++..|+.+. +++|.++++.. |.+.... ..
T Consensus 77 ~---------~~----------~~~~~~g------~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 77 T---------LL----------NSVPSGG------SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp E---------EE----------EEEEESS------SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred E---------Ee----------eeeccCC------CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 0 00 0000001 1223577788888888774 68899999976 5544331 11
Q ss_pred CCceeeEEeccCCCCccccccceEEEEecCCCCcc-ceeeeeeccccceEEec--cCcEEEEecc---ccc-------cc
Q 001245 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKA-QSSFGFFQRSRNAIMGA--ADAVRRVAAK---GGF-------GD 417 (1115)
Q Consensus 351 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~f~~~~~~~~~Gs--~d~v~~~~~~---g~l-------~~ 417 (1115)
.+. .+.. .+.... ...+.+.++++.+++.. .|.|.....+ +.+ ..
T Consensus 132 ~g~-------g~~~---------------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 132 EGS-------GPNP---------------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp EEE-------ESST---------------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred CCC-------CCcc---------------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc
Confidence 000 0000 000000 12345666666555432 2444444331 112 12
Q ss_pred CCCceEEEEEcCCCc-EE-EEeCCCeEEEEcCC---CC--eeEEeecC------CCcEEEEE--ecCCEEEeee-cccEE
Q 001245 418 DNRRTEALTTSIDGM-IW-TGGANGLLLQWDPN---GN--RLQDFQYL------PFAVQCLC--TFGSQIWVGY-MNGIV 481 (1115)
Q Consensus 418 h~~~V~aVa~S~Dg~-la-SGS~DgtIklWD~t---G~--~l~tl~gH------~~~V~sla--~dG~~LaSGs-~DGtI 481 (1115)
.....+.++|+|||+ ++ +.-.+++|.++++. |. .++++... ......|+ +||++|+++. .+.+|
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 234567799999997 43 45558899999873 32 33333221 11344454 8999999877 56789
Q ss_pred EEEeCC---Ccc--ccccccccCCEEEEEe--cCCEEEeec-CCCceEEeeec
Q 001245 482 QVLDLE---GNL--LGGWVAHSSPVIKMAV--GAGYIFTLA-NHGGIRGWNVT 526 (1115)
Q Consensus 482 rlWD~~---G~l--l~~l~gH~~~V~sva~--dg~~laSgS-~DgtIRlWdl~ 526 (1115)
-+++++ |++ +..+...-..-..+++ +|++|+.+. .+++|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999983 433 3333322233566664 899888664 77899999885
No 297
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.039 Score=65.18 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=64.6
Q ss_pred ceEEEEEcCCCc-E--EEEeC-CCeEEEEcCC--C---CeeEEeecCCCcEEEEEecCCEEEeee---cccEEEEEeCC-
Q 001245 421 RTEALTTSIDGM-I--WTGGA-NGLLLQWDPN--G---NRLQDFQYLPFAVQCLCTFGSQIWVGY---MNGIVQVLDLE- 487 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-l--aSGS~-DgtIklWD~t--G---~~l~tl~gH~~~V~sla~dG~~LaSGs---~DGtIrlWD~~- 487 (1115)
.|-+.++-|.|. + ++|-. -.++.+|-++ + .++.+|..-...-...+|-|++++.|. ..|.+...|++
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 345566777774 3 45544 3579999873 2 345555542222234458999988875 46889999987
Q ss_pred Cccccc-cccccCCEEEEEe--cCCEEEeec------CCCceEEeeec
Q 001245 488 GNLLGG-WVAHSSPVIKMAV--GAGYIFTLA------NHGGIRGWNVT 526 (1115)
Q Consensus 488 G~ll~~-l~gH~~~V~sva~--dg~~laSgS------~DgtIRlWdl~ 526 (1115)
..+..+ -.-|. ..+.+.. .|+|++|+| .|..-|+|+++
T Consensus 527 a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 527 ADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 233222 12232 2344554 588999875 47788999986
No 298
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.00076 Score=75.13 Aligned_cols=130 Identities=21% Similarity=0.264 Sum_probs=88.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC-CCc-EEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp-dG~-L~SgS~DgtIrvWd 268 (1115)
.+-|.++.|...+.+|+-|.+.|.|-+.|+..+.. .-....+---|..+|+||..-. +++ |.+.+.+|+|++||
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD 327 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD 327 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----CCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence 34588888888788999999999999999975321 1111222234889999998765 444 88999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKV 347 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~t 347 (1115)
+.-.++.... ....||.. ..+. .-+...+....|++++| ...|||.+++|.++.+
T Consensus 328 ~R~~K~~~~V----------------~qYeGHvN--~~a~------l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 328 LRATKCKKSV----------------MQYEGHVN--LSAY------LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred ehhhhcccce----------------eeeecccc--cccc------cccccccccceEEEccCeeEEEEEecccCceeec
Confidence 9765543111 22344541 1111 11223455667777775 5689999999999987
Q ss_pred E
Q 001245 348 F 348 (1115)
Q Consensus 348 l 348 (1115)
+
T Consensus 384 i 384 (425)
T KOG2695|consen 384 I 384 (425)
T ss_pred c
Confidence 6
No 299
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.29 E-value=0.0021 Score=71.27 Aligned_cols=207 Identities=13% Similarity=0.146 Sum_probs=116.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcce
Q 001245 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEK 274 (1115)
Q Consensus 197 la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~ 274 (1115)
..|||+|++|||.++- .+.+=|.++ ++ +..+----+.|.-|.++.|.. |...+.|+.|.+|++...+-
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t--------lq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET--------LQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch--------hh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 5689999999999877 566667664 11 111111124455666777664 45778999999999854321
Q ss_pred eeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCC
Q 001245 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDG 352 (1115)
Q Consensus 275 ~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~ 352 (1115)
.-. ++ .|. ..+.....+|+++.+...+ +..|.+|.+.|.+....--+..
T Consensus 84 ~ck-----------------Id-eg~-----------agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~ 134 (447)
T KOG4497|consen 84 YCK-----------------ID-EGQ-----------AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT 134 (447)
T ss_pred EEE-----------------ec-cCC-----------CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc
Confidence 100 00 011 2334455677775554333 4678999998876543211110
Q ss_pred ceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc-Cc---E-----EEEecccccccCCCceE
Q 001245 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DA---V-----RRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 353 ~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~-d~---v-----~~~~~~g~l~~h~~~V~ 423 (1115)
. +.. ++|.++++..++.+. |. + .-|...+.|.-++....
T Consensus 135 ~-~kg-------------------------------~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 135 N-VKG-------------------------------YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT 182 (447)
T ss_pred C-cee-------------------------------EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc
Confidence 0 112 244444433332211 10 0 01211234444555566
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEcC--CCCeeEEeecCC-CcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 424 ALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYLP-FAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 424 aVa~S~Dg~laSGS~DgtIklWD~--tG~~l~tl~gH~-~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
.+.+||||. .+-+||. +-+.. ..|. -.|..++ |.|++||+|+.|+.+||.|
T Consensus 183 gieWsPdg~--------~laVwd~~Leykv~---aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 183 GIEWSPDGN--------WLAVWDNVLEYKVY---AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CceECCCCc--------EEEEecchhhheee---eeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 788899975 3456875 33322 2232 3567777 7899999999999999988
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.28 E-value=0.054 Score=64.20 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=65.2
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccC-CEEEEEe
Q 001245 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS-PVIKMAV 506 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~-~V~sva~ 506 (1115)
++.++.++.+|.+...|. +|+.+=+..- .....++.+|.+|+.++.+|.|..+|.+ |+.+-....-.+ ...+...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v 333 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL 333 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence 677888888999999999 8886643321 1222344678889999999999999986 765322211011 1222334
Q ss_pred cCCEEEeecCCCceEEeeecC
Q 001245 507 GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 507 dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.+.+|+.++.||.+...|..+
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCC
Confidence 567788889999999988765
No 301
>PTZ00297 pantothenate kinase; Provisional
Probab=97.28 E-value=0.0065 Score=82.07 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.1
Q ss_pred ccCcceEEEEEEEe----c-EEEEEEeecccccchhHHHHHHHHHHHHH
Q 001245 674 IGNKGAVGLRVRVY----D-RIMCFVNCHFAAHLEAVNRRNADFDHVYR 717 (1115)
Q Consensus 674 ~gNKGaV~ir~~i~----~-t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~ 717 (1115)
..+||.+-+.+.+- + ..+-|+|.||.+.... ..|.++..+|.+
T Consensus 130 ~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~-~~R~~Q~~ql~~ 177 (1452)
T PTZ00297 130 SVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL-PSTSSQVQETRR 177 (1452)
T ss_pred ccccceEEEEEEccccCCCCceEEEEEeCCCCCCCc-chHHHHHHHHHH
Confidence 35899999999884 2 5799999999987443 224455555543
No 302
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.18 E-value=0.0041 Score=69.40 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC-----CCCEEEEEEeCCCc--EEEEeCCCc
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-----RGPVLSLCISSYGD--LWSGSEGGG 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH-----~~~V~sVafSpdG~--L~SgS~Dgt 263 (1115)
+--++++.+..|.+.+.| +.|=.|-+|+++- +...+. +.-.+-| +.-|++-.|+|.-- ++=.|.-|+
T Consensus 164 tyhiNSIS~NsD~Et~lS-ADdLRINLWnlei----~d~sFn-IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLS-ADDLRINLWNLEI----IDQSFN-IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred eeEeeeeeecCccceEee-ccceeeeeccccc----cCCcee-EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 456889999999999887 4678899999974 222222 2222333 45789999999643 455566799
Q ss_pred EEEEeCCCcceeec-cCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEc-CC
Q 001245 264 IKIWPWEAIEKALS-LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA-RT 341 (1115)
Q Consensus 264 IrvWdl~t~~~~l~-~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~-~t 341 (1115)
|||=|+........ -...+.. .+-..+. .+.. .-..+..+-+++.|+.+.+-...||+|||+ ..
T Consensus 238 IrLcDmR~~aLCd~hsKlfEep----------edp~~rs---ffse-iIsSISDvKFs~sGryilsRDyltvk~wD~nme 303 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEP----------EDPSSRS---FFSE-IISSISDVKFSHSGRYILSRDYLTVKLWDLNME 303 (433)
T ss_pred EEEeechhhhhhcchhhhhccc----------cCCcchh---hHHH-HhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence 99999975221100 0000000 0000000 0100 002344456788888888888899999998 44
Q ss_pred ccEEEEEecCC
Q 001245 342 RELLKVFNIDG 352 (1115)
Q Consensus 342 g~ll~tl~~~~ 352 (1115)
.+.+.++..|.
T Consensus 304 ~~pv~t~~vh~ 314 (433)
T KOG1354|consen 304 AKPVETYPVHE 314 (433)
T ss_pred CCcceEEeehH
Confidence 55666665443
No 303
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.14 E-value=0.024 Score=62.54 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=68.2
Q ss_pred ccccCCCceEEEEEcCCC--cEEEEeCCCeEEEEcC--CCCeeEE-eecCCCcEEEEE---ecCCEEEeeecccEEEEEe
Q 001245 414 GFGDDNRRTEALTTSIDG--MIWTGGANGLLLQWDP--NGNRLQD-FQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 414 ~l~~h~~~V~aVa~S~Dg--~laSGS~DgtIklWD~--tG~~l~t-l~gH~~~V~sla---~dG~~LaSGs~DGtIrlWD 485 (1115)
....|.-+.....|+... .+++|+.|+.+..||+ -++++-. -+-|...|.||. +.+.+|++|+.|.+|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 455676677767776442 3789999999999998 3566544 667889999998 6789999999999999999
Q ss_pred CC--CccccccccccCCEEEEE
Q 001245 486 LE--GNLLGGWVAHSSPVIKMA 505 (1115)
Q Consensus 486 ~~--G~ll~~l~gH~~~V~sva 505 (1115)
.. |+.+..-.- .+.||.+.
T Consensus 240 tRnm~kPl~~~~v-~GGVWRi~ 260 (339)
T KOG0280|consen 240 TRNMGKPLFKAKV-GGGVWRIK 260 (339)
T ss_pred hhcccCccccCcc-ccceEEEE
Confidence 76 676543221 26677765
No 304
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=97.11 E-value=0.0037 Score=70.21 Aligned_cols=70 Identities=11% Similarity=0.006 Sum_probs=39.0
Q ss_pred CceEEEeeeccc----cEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecE---EEEEEeeccccc
Q 001245 631 STFERVGSRQLA----GLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAH 701 (1115)
Q Consensus 631 ~~y~~v~s~~L~----Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t---~l~FVn~HLaA~ 701 (1115)
..|..+.+..++ |-...+|-|++....+..-...-..-|-.. .=..=...++|+...+ .|.+||+|+...
T Consensus 78 ~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p~ 154 (276)
T smart00476 78 NTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDDGCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTPE 154 (276)
T ss_pred CCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecCCCCCccc-cccccceEEEEEeCCCCCccEEEEEecCChH
Confidence 467778877764 356677777765433222111000001000 1123456677877765 799999999874
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.08 E-value=0.098 Score=62.69 Aligned_cols=72 Identities=8% Similarity=0.041 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCC--cE
Q 001245 193 SVMCMVGDEASGV-VWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGG--GI 264 (1115)
Q Consensus 193 ~V~~la~s~dg~~-LaSGS~D---gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~Dg--tI 264 (1115)
..+.-.++|||+. ++-.+.+ ..|.++|+.++. ...+....+.+.+..|||||+ | ++.+.++ .|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5667899999984 7755554 458888887632 333434556677788999996 5 4555554 45
Q ss_pred EEEeCCCcc
Q 001245 265 KIWPWEAIE 273 (1115)
Q Consensus 265 rvWdl~t~~ 273 (1115)
.++|++++.
T Consensus 260 y~~dl~~g~ 268 (419)
T PRK04043 260 YLYDTNTKT 268 (419)
T ss_pred EEEECCCCc
Confidence 556776654
No 306
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.087 Score=62.61 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCcE-E-EEeC--CCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeec------ccEEEEEeCCC
Q 001245 420 RRTEALTTSIDGMI-W-TGGA--NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYM------NGIVQVLDLEG 488 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~l-a-SGS~--DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~------DGtIrlWD~~G 488 (1115)
+.-+++.|+|-|.+ + +|-. -|.|.+||+ +-+++..+..-...+..-+|||++++++.. |.-|+||+..|
T Consensus 312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 45567889999984 3 3433 478999999 888999998877677777799999999873 67899999998
Q ss_pred cccc
Q 001245 489 NLLG 492 (1115)
Q Consensus 489 ~ll~ 492 (1115)
.++.
T Consensus 392 ~~l~ 395 (566)
T KOG2315|consen 392 SLLH 395 (566)
T ss_pred ceee
Confidence 7653
No 307
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.83 E-value=0.66 Score=54.31 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~Dg-tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
.+.|.-..+..++.-++-|-.|| .+-++|.++ .++..+.+.-+.|.+|+.+++|+ ++.+-....|.+.|
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~---------~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG---------GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCC---------ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 34466666666777889999999 899999997 34567778889999999999999 55665666777779
Q ss_pred CCCccee
Q 001245 269 WEAIEKA 275 (1115)
Q Consensus 269 l~t~~~~ 275 (1115)
++++...
T Consensus 430 idngnv~ 436 (668)
T COG4946 430 IDNGNVR 436 (668)
T ss_pred ecCCCee
Confidence 9887654
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.078 Score=65.75 Aligned_cols=81 Identities=11% Similarity=0.149 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCcE-EEEeCCCeEEEEcCCCCe--eEEeecCCCcEEEEE-ecCCE-EEeeecccEEEEEeCCC-ccccc
Q 001245 420 RRTEALTTSIDGMI-WTGGANGLLLQWDPNGNR--LQDFQYLPFAVQCLC-TFGSQ-IWVGYMNGIVQVLDLEG-NLLGG 493 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~l-aSGS~DgtIklWD~tG~~--l~tl~gH~~~V~sla-~dG~~-LaSGs~DGtIrlWD~~G-~ll~~ 493 (1115)
..|+.+++-.|++. +-..+-..|.+|.++|+- +.++..|..+++|.+ .+++. +++|+.. -+.++|..| +.+-+
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFA 250 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeee
Confidence 35777887777763 444455679999997765 677888888999988 45655 6666544 599999875 34556
Q ss_pred cc-cccCCE
Q 001245 494 WV-AHSSPV 501 (1115)
Q Consensus 494 l~-gH~~~V 501 (1115)
|. ||.-..
T Consensus 251 f~~g~kk~~ 259 (933)
T KOG2114|consen 251 FEVGEKKEM 259 (933)
T ss_pred ecCCCeEEE
Confidence 65 776433
No 309
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=96.71 E-value=0.047 Score=60.83 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=26.1
Q ss_pred cCcceEEEEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHh
Q 001245 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1115)
Q Consensus 675 gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1115)
..+..+++++ .+ +.|.|.||.+.-+ ..|.+..+.|...
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~--~da~aiV~~I~~~ 177 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGG--TDAGAIVRAVHNF 177 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCC--ccHHHHHHHHHHH
Confidence 3667888876 33 7899999998732 2266666666654
No 310
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.66 E-value=0.0037 Score=45.26 Aligned_cols=36 Identities=39% Similarity=0.661 Sum_probs=31.9
Q ss_pred ceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 233 ~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
....+.+|...|++++|.+++. +++++.|++|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567889999999999999877 68999999999996
No 311
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.66 E-value=0.2 Score=58.50 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=83.6
Q ss_pred ccCCCceEEEEEcCCCc-EEEEeCCC-eEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccc
Q 001245 416 GDDNRRTEALTTSIDGM-IWTGGANG-LLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNL 490 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~Dg~-laSGS~Dg-tIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~l 490 (1115)
+++.+.|.-..+..++. ++.|..|| .+-++|..|-....+...-+.|-+|. ++|+.+++|.....|.+.|++ |+.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 45666677777777765 78899999 89999997777778888788898888 789999999999999999987 665
Q ss_pred ccccccccCCEEEEEe--cCCEEEee----cCCCceEEeeecC
Q 001245 491 LGGWVAHSSPVIKMAV--GAGYIFTL----ANHGGIRGWNVTS 527 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~--dg~~laSg----S~DgtIRlWdl~~ 527 (1115)
...=+..-+.|+..++ +++++|=+ =.-..||++|+..
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 4333445567777764 56677643 2345677777654
No 312
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.57 E-value=0.0088 Score=72.23 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=81.5
Q ss_pred cccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcCC--CCeeEEeecCCCcEEEEE---ecCCEEEeeecccEEEEEeCC
Q 001245 415 FGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~t--G~~l~tl~gH~~~V~sla---~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+-+|+..+..+.+.+... +++.+.|-.+..||+. -..+..+..-...-..|+ .++..||+ +....|++||+.
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r 188 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLR 188 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEecc
Confidence 346777777777766543 7899999999999993 345555443333333444 35666655 455679999986
Q ss_pred --CccccccccccCCEEEEEec---CCEEEeecCCCceEEeeec
Q 001245 488 --GNLLGGWVAHSSPVIKMAVG---AGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 488 --G~ll~~l~gH~~~V~sva~d---g~~laSgS~DgtIRlWdl~ 526 (1115)
+..+-++++|...|+++++. -..+.+.+.|+||+.||-.
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 57888999999999998863 4578899999999999975
No 313
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.55 E-value=2.1 Score=48.95 Aligned_cols=260 Identities=13% Similarity=0.124 Sum_probs=141.1
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeC---CCcEEEEeCCC--cceeeccCCCccee
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE---GGGIKIWPWEA--IEKALSLKPEERHT 285 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~---DgtIrvWdl~t--~~~~l~~~~~~~~~ 285 (1115)
+.-|.+|++++.... .....+-++.+.++=|+|+|+++ |+++-. +|.|-.+.++. |...+
T Consensus 15 s~gI~v~~ld~~~g~-----l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~--------- 80 (346)
T COG2706 15 SQGIYVFNLDTKTGE-----LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF--------- 80 (346)
T ss_pred CCceEEEEEeCcccc-----cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE---------
Confidence 356999999853320 11223457788899999999997 777654 46777666653 32221
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCC-ccEEEE---EecCCceeeEEe
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART-RELLKV---FNIDGQIENRVD 359 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~t-g~ll~t---l~~~~~~~~~v~ 359 (1115)
.++... +...-..++.+++++.|+++. .+.|.++-++. |.+... +.+.+.-
T Consensus 81 ------------ln~~~~------~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~----- 137 (346)
T COG2706 81 ------------LNRQTL------PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG----- 137 (346)
T ss_pred ------------eecccc------CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC-----
Confidence 111111 112225678889998998886 36788888754 543322 2211110
Q ss_pred ccCCCCccccccceEEEEecCCCCcc-ceeeeeeccccceEEecc--CcEEEEec-ccccc-------cCCCceEEEEEc
Q 001245 360 MSLLPDFAMEDEFKTKIVTSSKKDKA-QSSFGFFQRSRNAIMGAA--DAVRRVAA-KGGFG-------DDNRRTEALTTS 428 (1115)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~f~~~~~~~~~Gs~--d~v~~~~~-~g~l~-------~h~~~V~aVa~S 428 (1115)
|. .+.... .-...|.++++.+++..- |.+..... +|.|. ......+-|+|.
T Consensus 138 --p~----------------~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH 199 (346)
T COG2706 138 --PH----------------ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH 199 (346)
T ss_pred --CC----------------ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEc
Confidence 00 000000 012234455544444322 33333222 23332 223456679999
Q ss_pred CCCcEE-EEeC-CCeEEEEcCC---C--CeeEEeec------CCCcEEEEE--ecCCEEEeeec-ccEEEEEeCC--Ccc
Q 001245 429 IDGMIW-TGGA-NGLLLQWDPN---G--NRLQDFQY------LPFAVQCLC--TFGSQIWVGYM-NGIVQVLDLE--GNL 490 (1115)
Q Consensus 429 ~Dg~la-SGS~-DgtIklWD~t---G--~~l~tl~g------H~~~V~sla--~dG~~LaSGs~-DGtIrlWD~~--G~l 490 (1115)
|++++| ..++ +++|-+|..+ | +++|++.. ...+.-+|. +||++|++... ...|-++-++ |..
T Consensus 200 pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 200 PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK 279 (346)
T ss_pred CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE
Confidence 999964 4444 9999999983 3 23444321 123344444 89999998863 3367777654 332
Q ss_pred cc---ccccccC--CEEEEEecCCEEEeecC-CCceEEeeec
Q 001245 491 LG---GWVAHSS--PVIKMAVGAGYIFTLAN-HGGIRGWNVT 526 (1115)
Q Consensus 491 l~---~l~gH~~--~V~sva~dg~~laSgS~-DgtIRlWdl~ 526 (1115)
+. ...-|.. .=..++.+|++|+.+.. +.+|.++...
T Consensus 280 L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 280 LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 22 2221211 22234567888887764 4578888765
No 314
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=96.13 E-value=0.022 Score=61.91 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=32.3
Q ss_pred EEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 682 LRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 682 ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
+...+.+..+||.|+||.+-.+.--+|.++|...+.++
T Consensus 197 ~Ev~v~G~Kl~l~tsHLEStr~h~P~r~~qF~~~~~k~ 234 (349)
T KOG2756|consen 197 VEVNVSGNKLCLMTSHLESTRGHAPERMNQFKMVLKKM 234 (349)
T ss_pred EEEeecCceEEEEeccccCCCCCChHHHHHHHHHHHHH
Confidence 44556788899999999999888889999999888876
No 315
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.08 E-value=0.14 Score=49.34 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=64.7
Q ss_pred eEEEE---EcCCCc--EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEEe-cCCEEEeeecccEEEEEeCCCccccccc
Q 001245 422 TEALT---TSIDGM--IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (1115)
Q Consensus 422 V~aVa---~S~Dg~--laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla~-dG~~LaSGs~DGtIrlWD~~G~ll~~l~ 495 (1115)
|.+++ +..||. |+.||.|..||+|+-+ +++.++.. .+.|++|+. .+.+++-|..+|||-+++-..++=+.-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKS 79 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKS 79 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeecc
Confidence 45555 445554 8999999999999865 66666664 467888884 5688999999999999986433322222
Q ss_pred cccCCEEEEEe-c----C-CEEEeecCCCce
Q 001245 496 AHSSPVIKMAV-G----A-GYIFTLANHGGI 520 (1115)
Q Consensus 496 gH~~~V~sva~-d----g-~~laSgS~DgtI 520 (1115)
.| .+++++. | | .-|++|=.+|.|
T Consensus 80 K~--~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 80 KN--QVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred CC--CeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 33 3777763 2 2 247777666655
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.06 E-value=1.4 Score=52.98 Aligned_cols=100 Identities=10% Similarity=-0.030 Sum_probs=50.7
Q ss_pred EEcCCCc-EEEEe-CCC--eEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecc---------cEEEEEeCCCccc
Q 001245 426 TTSIDGM-IWTGG-ANG--LLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN---------GIVQVLDLEGNLL 491 (1115)
Q Consensus 426 a~S~Dg~-laSGS-~Dg--tIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~D---------GtIrlWD~~G~ll 491 (1115)
.++|||+ |+-.+ ..+ .|.+.|+ +|+..+.... ......+.|||++|+-.+.. ..|.+.|+++...
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 3667765 43222 233 4666677 4444333221 11223566899988765533 3678888874333
Q ss_pred cccccc-cCCEEEEEecCCEEEeec-CCCceEEeeec
Q 001245 492 GGWVAH-SSPVIKMAVGAGYIFTLA-NHGGIRGWNVT 526 (1115)
Q Consensus 492 ~~l~gH-~~~V~sva~dg~~laSgS-~DgtIRlWdl~ 526 (1115)
+.+..+ ...-.+.++||++|+-.+ ..+.-.+|-+.
T Consensus 362 ~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 362 RRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred EECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 333322 112233457888766443 23444455443
No 317
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.06 E-value=0.013 Score=42.36 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred CCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 449 GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 449 G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
++++..+..|...|+++. +.+.++++|+.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566666666777766 3456777777777777775
No 318
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.03 E-value=1.8 Score=51.32 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=66.4
Q ss_pred eeeeeeccccce--EEeccCcEEEE-ecccccc--cCCCceEEEEEcCCCc-EEEEeCC---CeEEEEcCCCC--eeEEe
Q 001245 387 SSFGFFQRSRNA--IMGAADAVRRV-AAKGGFG--DDNRRTEALTTSIDGM-IWTGGAN---GLLLQWDPNGN--RLQDF 455 (1115)
Q Consensus 387 ~~v~f~~~~~~~--~~Gs~d~v~~~-~~~g~l~--~h~~~V~aVa~S~Dg~-laSGS~D---gtIklWD~tG~--~l~tl 455 (1115)
-.+++.+.+... +.|........ +.+|.+. .....-+.+.|||.+. ++.++-| |.|.+||..|+ ++.++
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~ 357 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF 357 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEe
Confidence 355666665543 33444433222 2233321 1223445678899887 5565555 67999999764 56678
Q ss_pred ecCCCcEEEEEecCCEEEeee------cccEEEEEeCCCcccc
Q 001245 456 QYLPFAVQCLCTFGSQIWVGY------MNGIVQVLDLEGNLLG 492 (1115)
Q Consensus 456 ~gH~~~V~sla~dG~~LaSGs------~DGtIrlWD~~G~ll~ 492 (1115)
.+-........|||+++.++. .|..|+|||+.|...-
T Consensus 358 ~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 358 NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 776666655668999888765 4788999999876543
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.86 E-value=3.7 Score=45.11 Aligned_cols=55 Identities=20% Similarity=0.426 Sum_probs=40.6
Q ss_pred eEEEEEcCCCcEEEEe-CCCeEEEEcCCCCeeEEeecCCCcEEEEEe---cCCEEEeee
Q 001245 422 TEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGY 476 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS-~DgtIklWD~tG~~l~tl~gH~~~V~sla~---dG~~LaSGs 476 (1115)
...+++..+|.|+.+. ..+.|.++|.+|+++..+.-....++++++ +.+.|+..+
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 4567888889886554 578999999999999988876568888885 556666554
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.85 E-value=0.033 Score=66.82 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
.+.|.|++++|+...|+.|..||+|++||...+ +.++.-+.=..+.+++.|+|. ++.||.-|-+.+||+
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC----------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 457899999999999999999999999998752 223333445678999999998 578999999999998
Q ss_pred CC
Q 001245 270 EA 271 (1115)
Q Consensus 270 ~t 271 (1115)
..
T Consensus 329 AL 330 (545)
T PF11768_consen 329 AL 330 (545)
T ss_pred ec
Confidence 65
No 321
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.83 E-value=0.34 Score=53.16 Aligned_cols=100 Identities=7% Similarity=-0.119 Sum_probs=72.7
Q ss_pred eEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCC--ceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001245 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS--SVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 144 ~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~--~V~~la~s~dg~~LaSGS~DgtIrlWdl~ 221 (1115)
.++++-|.|+|+-+++-+.... .+| .. .+..+++|+|++++++-+.-..|-.+.++
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h-~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id 188 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVH-NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAID 188 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eee-ccccceeeeEEcCCCceEEEecCCCcceEEEeC
Confidence 3456789999999987544322 133 22 27889999999999999999999999987
Q ss_pred CCCCCCCCCCcceE-EeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 222 ARLLDSDDGFGEVL-SWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 222 ~~~~~~~~~~~~~~-~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
.... .... ....-++.=.+..|+.... +|.++.||++.|||+..
T Consensus 189 ~~se------y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 189 DESE------YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred Cccc------eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 5210 1122 2333455667889998775 68999999999999976
No 322
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.81 E-value=0.84 Score=50.76 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=36.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeec-CCCCEEEEEEeCC
Q 001245 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-HRGPVLSLCISSY 252 (1115)
Q Consensus 195 ~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G-H~~~V~sVafSpd 252 (1115)
.-+++|||+.+||-+..-|+|+++|+.+..+-...+ ...+.+ -..+|.+|.|.+.
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p---~~~~~~d~~~Aiagl~Fl~~ 102 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP---AMSFPGDLSDAIAGLIFLEY 102 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc---ccccCCccccceeeeEeecc
Confidence 358999999999999999999999998632200000 001111 1467888888764
No 323
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=95.80 E-value=0.041 Score=52.65 Aligned_cols=62 Identities=24% Similarity=0.429 Sum_probs=45.6
Q ss_pred eeccC-cEEecc----ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCe
Q 001245 936 IVSTN-NIIIQN----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRT 1010 (1115)
Q Consensus 936 ~~~~~-~i~~~~----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~ 1010 (1115)
.|++. .|.|.. .....|+|+|.+.. +..|.|-+. .+.-+.|.|..|+|.||++
T Consensus 3 ~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~-~i~fKiktt---------------------~~~~y~v~P~~G~i~p~~~ 60 (109)
T PF00635_consen 3 SVEPSELIFFNAPFNKQQSCELTLTNPSDK-PIAFKIKTT---------------------NPNRYRVKPSYGIIEPGES 60 (109)
T ss_dssp EEESSSEEEEESSTSS-EEEEEEEEE-SSS-EEEEEEEES----------------------TTTEEEESSEEEE-TTEE
T ss_pred EEeCCcceEEcCCCCceEEEEEEEECCCCC-cEEEEEEcC---------------------CCceEEecCCCEEECCCCE
Confidence 45555 455543 25678999999987 899999862 2467899999999999999
Q ss_pred eEEEEEEee
Q 001245 1011 AEMSVHHED 1019 (1115)
Q Consensus 1011 ~~i~~~~~~ 1019 (1115)
++|.|++..
T Consensus 61 ~~i~I~~~~ 69 (109)
T PF00635_consen 61 VEITITFQP 69 (109)
T ss_dssp EEEEEEE-S
T ss_pred EEEEEEEEe
Confidence 999998754
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.027 Score=65.01 Aligned_cols=66 Identities=27% Similarity=0.366 Sum_probs=53.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcE-EEEeC-CCcEEEEeCCCc
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSE-GGGIKIWPWEAI 272 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L-~SgS~-DgtIrvWdl~t~ 272 (1115)
-...+.+||.||.+|.|.-.. ....+-+..+..|-+.|.+++.|-+|.| .|.+. |..+|+.|++..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~-----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSR-----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred hhheEEeeecchhhhhcCCCC-----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 357899999999999997642 1122345567899999999999999985 68787 999999998763
No 325
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=95.71 E-value=0.023 Score=64.26 Aligned_cols=206 Identities=19% Similarity=0.169 Sum_probs=107.7
Q ss_pred EeeeccccEEEEEEEeccccCccCce---e--eeeeeeeccccccCcceEEEEEEEecEEEEEEeeccccc-----chhH
Q 001245 636 VGSRQLAGLLIAVWVRKNLKDYVGDV---D--VAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH-----LEAV 705 (1115)
Q Consensus 636 v~s~~L~Gi~l~vfvr~~l~~~i~~v---~--~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~-----~~~~ 705 (1115)
..|--| |--|+||-|-.+....-+. . ...+-. |-.+|-||--..++.+.+..+.+-|.||-|- +..+
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~r--GDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHR--GDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeee--ccccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 344444 7889999998765322111 1 011111 2346888988888999999999999999764 2235
Q ss_pred HHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEecccccccCCCChHHHH-
Q 001245 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEAR- 784 (1115)
Q Consensus 706 ~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~- 784 (1115)
--|-.+-.++-+-++-. -...|.||..||||-+=..+++.-..
T Consensus 150 ~HR~~QAwdlaqfi~~t------------------------------------~q~~~vVI~~GDLN~~P~dl~~~ll~~ 193 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRAT------------------------------------RQNADVVILAGDLNMQPQDLGHKLLLS 193 (422)
T ss_pred hHHHHHHHHHHHHHHHH------------------------------------hcCCcEEEEecCCCCCccccceeeeec
Confidence 55666555554432210 12468999999999987665543222
Q ss_pred -HHHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccccCCcccccc--c--cceeeeecCCC
Q 001245 785 -DFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPA--W--CDRILYRDSRS 859 (1115)
Q Consensus 785 -~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~Ps--W--cDRIL~~~~~~ 859 (1115)
.++ ..|..| --||....-.+..-|++.-|+- |- |. + .|.|-+ ..+|.|- = -|-||++...-
T Consensus 194 a~l~--daw~~~-h~~q~e~~~~r~s~~~~l~~g~-----tc--d~--~-~N~y~~-aqk~~ddp~~~RiDYvl~k~~~~ 259 (422)
T KOG3873|consen 194 AGLV--DAWTSL-HLDQCESDSFRLSEDKELVEGN-----TC--DS--P-LNCYTS-AQKREDDPLGKRIDYVLVKPGDC 259 (422)
T ss_pred cchh--hhHhhh-chhhhcCcccccchhhhhhcCC-----cc--cC--c-chhhhH-HHhCCCCccceeeeEEEEcCcce
Confidence 111 112222 1233322111122234444553 11 11 1 234542 1222222 1 27788887532
Q ss_pred cccccccCCCccccceeeeeeccccccCCCCceeeEEEEEe
Q 001245 860 DLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDI 900 (1115)
Q Consensus 860 ~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v 900 (1115)
+..+..+.-....--+.+...|||-.+.|.+.+.-
T Consensus 260 ------~~~~a~~~~t~~rvP~~d~s~SDH~Al~a~L~I~~ 294 (422)
T KOG3873|consen 260 ------NAKIAEVEFTEPRVPGEDCSYSDHEALMATLKIFK 294 (422)
T ss_pred ------EEEeeeEEecCCCCCCCCCCccchhhheeEEEeec
Confidence 11111000001122345677899999999999864
No 326
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.68 E-value=0.012 Score=63.81 Aligned_cols=67 Identities=22% Similarity=0.407 Sum_probs=57.2
Q ss_pred cEEEEE--e-cCCEEEeeecccEEEEEeCC--CccccccccccCCEEEEEe---cCCEEEeecCCCceEEeeecC
Q 001245 461 AVQCLC--T-FGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 461 ~V~sla--~-dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.|.+++ | ....+++|+.||.|.|||.. ......+++|..+++-|-| ++..|+++|.||.+--||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488888 3 46788999999999999986 3567789999999999986 677899999999999999653
No 327
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.68 E-value=0.02 Score=61.34 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=68.0
Q ss_pred CcEEEEeCCCeEEEEcCC--CCeeEEeecCCCcEEEEEe---cCCEEEeeecccEEEEEeCC-Ccccccccccc-CCEEE
Q 001245 431 GMIWTGGANGLLLQWDPN--GNRLQDFQYLPFAVQCLCT---FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS-SPVIK 503 (1115)
Q Consensus 431 g~laSGS~DgtIklWD~t--G~~l~tl~gH~~~V~sla~---dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~-~~V~s 503 (1115)
..++.|+.||.|.+|..+ |...........+|-++-| ++.+.++|+.||.||.|++. ++.+..--.|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 458899999999999884 5444444344445555554 45689999999999999987 66666666676 44444
Q ss_pred EE--ecCCEEEee--cCCCceEEeeecC
Q 001245 504 MA--VGAGYIFTL--ANHGGIRGWNVTS 527 (1115)
Q Consensus 504 va--~dg~~laSg--S~DgtIRlWdl~~ 527 (1115)
.. -.+..++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 33 245667776 7888888888753
No 328
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.61 E-value=4.1 Score=45.45 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=44.3
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCC---CEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 197 la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~---~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
++.+.+|++||. =.|..|-+=....+.. ..+.+.+-+++ .=.-|+||||+. ||-+...|+|++.|+.+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~------si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFS------SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCch------heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 456677877775 5677777766543110 01122233333 246899999998 57788899999999975
No 329
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.53 E-value=3.3 Score=47.22 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCCceEEEEEcCCCcEEEEeCCC--------eEEEEcCCCCeeEEeec-------CCCcEEEEE--ecCCEEEeee-ccc
Q 001245 418 DNRRTEALTTSIDGMIWTGGANG--------LLLQWDPNGNRLQDFQY-------LPFAVQCLC--TFGSQIWVGY-MNG 479 (1115)
Q Consensus 418 h~~~V~aVa~S~Dg~laSGS~Dg--------tIklWD~tG~~l~tl~g-------H~~~V~sla--~dG~~LaSGs-~DG 479 (1115)
|..++.-+++.++|.++.|.... .|-+++..+. ++.+.. -.+-|-||+ .+|.++++.| ..+
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 55678889999999988776532 2445544221 222221 123566777 4677776665 788
Q ss_pred EEEEEeCC-CccccccccccCCEEEEEe-cCCEEEeecCCC
Q 001245 480 IVQVLDLE-GNLLGGWVAHSSPVIKMAV-GAGYIFTLANHG 518 (1115)
Q Consensus 480 tIrlWD~~-G~ll~~l~gH~~~V~sva~-dg~~laSgS~Dg 518 (1115)
.+.+||.+ |+++....-. -+..|+. ++.+++|.+.-.
T Consensus 240 ~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~f~~ssG~G~ 278 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVPLP--DACGVAPTDDGFLVSSGQGQ 278 (305)
T ss_pred EEEEEECCCCCEeeccccC--ceeeeeecCCceEEeCCCcc
Confidence 99999976 7776654332 3566764 445777765543
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.098 Score=60.63 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=65.6
Q ss_pred EeCCCeEEEEcC--CCCeeE-EeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC-------ccccccc--------
Q 001245 436 GGANGLLLQWDP--NGNRLQ-DFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG-------NLLGGWV-------- 495 (1115)
Q Consensus 436 GS~DgtIklWD~--tG~~l~-tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G-------~ll~~l~-------- 495 (1115)
.-.++.|.++|. ++.... .-.-|..+|.++. +.|..+.|....|.|.-|..++ ++.-.++
T Consensus 118 ~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence 344788999998 333333 3345999999988 6789999999999999999775 1111121
Q ss_pred -cccCCEEEEE--ecCCEEEeecCCCceEEeeecCC
Q 001245 496 -AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 496 -gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
--.....++. ++|..+.+.+.|..||+.++.++
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 1222334443 58899999999999999998874
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.45 E-value=2.7 Score=47.92 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=38.8
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EE
Q 001245 197 MVGDEASGVVWSGH-----RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW 256 (1115)
Q Consensus 197 la~s~dg~~LaSGS-----~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~ 256 (1115)
-+||+||++|++-- ..|.|-|||...+ +..+-+|..|-=.-.-|.+.|||+ |+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-------~~ri~E~~s~GIGPHel~l~pDG~tLv 114 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARG-------YRRIGEFPSHGIGPHELLLMPDGETLV 114 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCC-------cEEEeEecCCCcChhhEEEcCCCCEEE
Confidence 47899999999964 4589999999831 244567777644446688999995 54
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.3 Score=56.14 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=62.0
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEE
Q 001245 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvW 267 (1115)
+..|..++|||.+. +|..+|.+.+|++.|+++.. .+.++.+| .++++++|.-|.. |+.|-..|.|-++
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccce--------eeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 66788999999765 89999999999999999743 24566777 7999999998875 7899999999999
Q ss_pred eCCCc
Q 001245 268 PWEAI 272 (1115)
Q Consensus 268 dl~t~ 272 (1115)
|+...
T Consensus 264 D~R~~ 268 (463)
T KOG1645|consen 264 DMRQP 268 (463)
T ss_pred EccCC
Confidence 99763
No 333
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.17 E-value=0.063 Score=59.43 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=84.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC-----CCCEEEEEEeCCCc--EEEEeCCCc
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-----RGPVLSLCISSYGD--LWSGSEGGG 263 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH-----~~~V~sVafSpdG~--L~SgS~Dgt 263 (1115)
.--+.++.|..|-+.+.| +.|-.|-+|+++--. ..+. +.-.+-| +.-|++..|+|.-- +.-.|.-|+
T Consensus 172 ~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D----~sFn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 172 PYHINSISFNSDKETLLS-ADDLRINLWNLEIID----GSFN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eeEeeeeeecCchheeee-ccceeeeeccccccC----CceE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 445788999999888887 567889999987411 1121 2223444 45689999999643 334455789
Q ss_pred EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCc-
Q 001245 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR- 342 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg- 342 (1115)
|++-|+..... +..+ ..+-+ .+++-..+.-..++. ..+..+-+++.++.+.+-...|++|||++..
T Consensus 246 Ikl~DlRq~al--cdn~--~klfe-----~~~D~v~~~ff~eiv----sSISD~kFs~ngryIlsRdyltvkiwDvnm~k 312 (460)
T COG5170 246 IKLNDLRQSAL--CDNS--KKLFE-----LTIDGVDVDFFEEIV----SSISDFKFSDNGRYILSRDYLTVKIWDVNMAK 312 (460)
T ss_pred EEehhhhhhhh--ccCc--hhhhh-----hccCcccchhHHHHh----hhhcceEEcCCCcEEEEeccceEEEEeccccc
Confidence 99999974211 1100 00000 001111111111111 2344556788888888888899999999764
Q ss_pred cEEEEEecCCc
Q 001245 343 ELLKVFNIDGQ 353 (1115)
Q Consensus 343 ~ll~tl~~~~~ 353 (1115)
.++++...|.+
T Consensus 313 ~pikTi~~h~~ 323 (460)
T COG5170 313 NPIKTIPMHCD 323 (460)
T ss_pred CCceeechHHH
Confidence 57777654443
No 334
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.16 E-value=0.016 Score=62.90 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=60.0
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC-c-EEEEeCCCcEEEEeC
Q 001245 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 193 ~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG-~-L~SgS~DgtIrvWdl 269 (1115)
.|.|++-.| +..+++.|+.||.|-+||+.... -....+++|+.+++-|-|.|.. . |+++|+||.+.-||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 477888877 47899999999999999998532 2344578999999999999864 3 999999999999998
Q ss_pred CC
Q 001245 270 EA 271 (1115)
Q Consensus 270 ~t 271 (1115)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 65
No 335
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.11 E-value=9.9 Score=50.25 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=48.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEE----ECCCCCCCCCCCCcceEEeecC-CCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCW----KMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlW----dl~~~~~~~~~~~~~~~~l~GH-~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
.+.|.++.+-++...|.-+..+|.|.+. +.+.. ....-|- .+.|.++++|||++ |+-...++++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~----------~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED----------EIEIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc----------eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 4578888888998889999999999999 44431 2223343 56899999999998 4444456666
Q ss_pred EEE
Q 001245 265 KIW 267 (1115)
Q Consensus 265 rvW 267 (1115)
-+=
T Consensus 145 ~~m 147 (928)
T PF04762_consen 145 LLM 147 (928)
T ss_pred EEE
Confidence 554
No 336
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=1.4 Score=54.02 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=69.5
Q ss_pred CeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCC--c--eeeeccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001245 143 EQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--F--KESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (1115)
Q Consensus 143 ~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~--~--~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIr 216 (1115)
...+| |.||-+||-.+.+...-.. .+|=..... . +.-+| ...|..+.+..+.+.|-|...+|.|.
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~--------~~glaa~snLsmNQtLeGH-~~sV~vvTWNe~~QKLTtSDt~GlIi 96 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLN--------KSGLAAASNLSMNQTLEGH-NASVMVVTWNENNQKLTTSDTSGLII 96 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCccc--------ccccccccccchhhhhccC-cceEEEEEeccccccccccCCCceEE
Confidence 34444 7899999988876653221 122001100 0 11255 88999999999999999999999999
Q ss_pred EEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
+|-+-.|.- .++.. -.-.+..|.+|+++.||+ +.-.-.||.|-|=.+
T Consensus 97 VWmlykgsW-----~EEMi-NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 97 VWMLYKGSW-----CEEMI-NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEeeecccH-----HHHHh-hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 999864321 01100 012355788999998885 555555555544433
No 337
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=95.00 E-value=0.053 Score=64.09 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=38.8
Q ss_pred eeeeccccccCcceEEEEEEEecE---EEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 666 VPCGFGRAIGNKGAVGLRVRVYDR---IMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 666 v~tG~~g~~gNKGaV~ir~~i~~t---~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
...|++..-.=++.|+++|++-+. -++..|.||-=|-.....|-++...|+..+
T Consensus 226 ~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~ 282 (495)
T KOG2338|consen 226 SGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAEL 282 (495)
T ss_pred ccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHH
Confidence 345554332224566777766665 899999999888777777889998998876
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=94.98 E-value=0.067 Score=66.57 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=77.5
Q ss_pred EEEEeCCCeEEEEcCC-CCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEecCCE
Q 001245 433 IWTGGANGLLLQWDPN-GNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGY 510 (1115)
Q Consensus 433 laSGS~DgtIklWD~t-G~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~dg~~ 510 (1115)
++-|+-...+.-.|++ ++..++..-....|+=++..++.+.+|...|+|-|-|.+ -+.+.++.+|++.|..+...|+.
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNl 229 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNL 229 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCe
Confidence 4555555667778984 555555554444588788899999999999999999987 67899999999999999999999
Q ss_pred EEeecC---------CCceEEeeecC
Q 001245 511 IFTLAN---------HGGIRGWNVTS 527 (1115)
Q Consensus 511 laSgS~---------DgtIRlWdl~~ 527 (1115)
|+|+|. |.-|+|||++.
T Consensus 230 LitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 230 LITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred EEEeecccccccccccchhhhhhhhh
Confidence 999864 77899999964
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.94 E-value=0.16 Score=62.67 Aligned_cols=96 Identities=11% Similarity=0.234 Sum_probs=74.8
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ec-----CCEEEeeecccEEEEEeCC--Cccccc-ccc
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TF-----GSQIWVGYMNGIVQVLDLE--GNLLGG-WVA 496 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~d-----G~~LaSGs~DGtIrlWD~~--G~ll~~-l~g 496 (1115)
-+|. ++|+|.||+|.+-.+ +++...++.-+ .++.+|+ || .++.++|+.-| +.+.... |+.... +..
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 3455 999999999999998 77766665543 5788888 54 67999999999 8787755 544333 555
Q ss_pred ccCCEEEEEecCCEEEeecCCCceEEeeecC
Q 001245 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 497 H~~~V~sva~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
-.|+|.++.+.|+++|=++.+| ||++|+.+
T Consensus 159 ~eG~I~~i~W~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 159 GEGPIHSIKWRGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CccceEEEEecCcEEEEecCCC-cEEEeccc
Confidence 5679999999999999887665 89999864
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=94.74 E-value=0.087 Score=63.33 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=50.2
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
...|.+.+.+|+.. ++.|+.||+|.+||.+-...+ +..+.-..+.++ |+|..+++|+.-|.+++||+.
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34677888888876 889999999999998433222 223334456666 789999999999999999965
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.65 E-value=15 Score=45.06 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCeEEEEcC-CCCeeEEeecC--C------CcE--EEEEecCCEEEeeecccEEEEEeCC-Ccccccccc
Q 001245 439 NGLLLQWDP-NGNRLQDFQYL--P------FAV--QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~gH--~------~~V--~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g 496 (1115)
+|.+.-.|+ +|+.+=+.... . .+. ..++..|..|+.|+.||.|..+|.+ |+.+-++.-
T Consensus 365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 456666676 66654332211 0 111 2344578899999999999999986 887766543
No 342
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.61 E-value=4.9 Score=46.20 Aligned_cols=59 Identities=12% Similarity=0.297 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCcEEEEeC-CC-eEEEEcCCCCeeEEeecCCCcEEEEEe---cCCEEEeeecc
Q 001245 420 RRTEALTTSIDGMIWTGGA-NG-LLLQWDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~-Dg-tIklWD~tG~~l~tl~gH~~~V~sla~---dG~~LaSGs~D 478 (1115)
+....++...+|.+|++.. +| .|..|+.+|++++.+.-....++++++ +.+.|++.+..
T Consensus 213 G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 213 GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 3444567778888885444 43 899999999999999887677888884 44777766543
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.27 E-value=14 Score=45.45 Aligned_cols=93 Identities=18% Similarity=0.213 Sum_probs=55.8
Q ss_pred EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEee------------------ecccEEEEEeCC-Ccccc
Q 001245 433 IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVG------------------YMNGIVQVLDLE-GNLLG 492 (1115)
Q Consensus 433 laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSG------------------s~DGtIrlWD~~-G~ll~ 492 (1115)
++.|+.+|.+...|. +|+.+=....... .++.+..+++.+ ..+|.|.-.|+. |+.+-
T Consensus 304 V~~g~~~G~l~ald~~tG~~~W~~~~~~~---~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W 380 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGKLISARPEVEQ---PMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW 380 (488)
T ss_pred EEEECCCceEEEEECCCCcEeeEeEeecc---ccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence 678889999999999 8988755432100 111122333332 235677777765 66443
Q ss_pred ccccc--c------CCE--EEEEecCCEEEeecCCCceEEeeecCC
Q 001245 493 GWVAH--S------SPV--IKMAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 493 ~l~gH--~------~~V--~sva~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
+.... . .+. ..++..+..|+.++.||.+...|..+.
T Consensus 381 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 381 EKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred EeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 32211 0 111 234567788999999999999988764
No 344
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.46 E-value=2.5 Score=52.80 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=68.6
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC------CcEEEEeCCCcEEEEeCCC--
Q 001245 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GDLWSGSEGGGIKIWPWEA-- 271 (1115)
Q Consensus 200 s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd------G~L~SgS~DgtIrvWdl~t-- 271 (1115)
+.+|.+++|+|.||+|.+-.+.++ ++..++ .-..++.+|+++|| +++++|+.-| +-+..-.=
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~--------~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTD--------DEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCC--------ccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 557999999999999999988762 222222 23569999999998 2488999887 55553211
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEe
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~ 349 (1115)
..... + .|. -.+.+.++.. .+..++=+.|..|+++|+.+++.+..+.
T Consensus 150 nk~~v-----------~----------l~~--------~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 150 NKDSV-----------V----------LSE--------GEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIP 196 (846)
T ss_pred Cccce-----------e----------eec--------CccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccC
Confidence 00000 0 011 1133444333 2345555567789999999888776553
No 345
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.42 E-value=1.3 Score=56.67 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeEE-eecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~t-l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
....|+|.+.+|.||.||.+|.|||+|..|..-.| |.+-..+|..|. .||++|+..+. ..+-|+|+
T Consensus 578 ~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 34678999999999999999999999986654444 456578999888 68999887764 46778885
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.10 E-value=0.11 Score=64.39 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCC-cEEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGG-GIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~Dg-tIrvW 267 (1115)
...-+|++|+.+-..|+-|+..|.|+++++.+|. ......+|..+|+-|.=+-||. |.|+++-. ...+|
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--------~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--------MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCcc--------ccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 4567899999999999999999999999998753 2335678999999999999997 44444444 78899
Q ss_pred eCCC
Q 001245 268 PWEA 271 (1115)
Q Consensus 268 dl~t 271 (1115)
++..
T Consensus 1173 ~~~s 1176 (1516)
T KOG1832|consen 1173 DASS 1176 (1516)
T ss_pred cccc
Confidence 9865
No 347
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=92.69 E-value=1.8 Score=54.60 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEe---------CC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS---------EG 261 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS---------~D 261 (1115)
.+.|.-| -.+++.++.|+.-|+|-+-|+.+ ++.++++.+|++.|..+...-+ .|+|++ .|
T Consensus 177 a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s--------~~~iht~~aHs~siSDfDv~GN-lLitCG~S~R~~~l~~D 245 (1118)
T KOG1275|consen 177 ASGVTIM--RYNNRNLFCGDTRGTVFLRDPNS--------FETIHTFDAHSGSISDFDVQGN-LLITCGYSMRRYNLAMD 245 (1118)
T ss_pred CCceEEE--EecCcEEEeecccceEEeecCCc--------CceeeeeeccccceeeeeccCC-eEEEeeccccccccccc
Confidence 3344434 34789999999999999999875 4678899999999987766532 377776 37
Q ss_pred CcEEEEeCCCc
Q 001245 262 GGIKIWPWEAI 272 (1115)
Q Consensus 262 gtIrvWdl~t~ 272 (1115)
.-|||||+...
T Consensus 246 ~FvkVYDLRmm 256 (1118)
T KOG1275|consen 246 PFVKVYDLRMM 256 (1118)
T ss_pred chhhhhhhhhh
Confidence 78999999764
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=0.25 Score=62.89 Aligned_cols=91 Identities=24% Similarity=0.326 Sum_probs=48.5
Q ss_pred EEEEeCCCeEEEEcCCCCeeE--EeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe-
Q 001245 433 IWTGGANGLLLQWDPNGNRLQ--DFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV- 506 (1115)
Q Consensus 433 laSGS~DgtIklWD~tG~~l~--tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~- 506 (1115)
++.|+.-|.|-+.|.+|++-. .=..-.++|++++ .||++++.|-.+|.|.+||.. ++.++.+.-|..+++++-+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 455555566666666554221 1111234666666 356666666666666666665 5666666666555555431
Q ss_pred ----cCCEEEeecCCCceEEeee
Q 001245 507 ----GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 507 ----dg~~laSgS~DgtIRlWdl 525 (1115)
+++.+.++.+-|. +|.+
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEE
Confidence 2334555444443 5554
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.55 Score=56.90 Aligned_cols=86 Identities=23% Similarity=0.238 Sum_probs=61.8
Q ss_pred eEEEEEcCCCc-EEEEeCCCeEEEEcCCCCeeEEeecCCCcEE-EEE--ecCCEEEeeecccEEEEEeCC-Ccccccc-c
Q 001245 422 TEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQ-CLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW-V 495 (1115)
Q Consensus 422 V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l~tl~gH~~~V~-sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l-~ 495 (1115)
+.-+.++|.-- +|.+.++|.|-+.-++-+++-++.-|.-.|+ +++ +||+.||+|-.||+|++-|++ |..+..+ .
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~ 102 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLF 102 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecccc
Confidence 33455666544 6889999998888888777888876777776 888 899999999999999999997 5544432 2
Q ss_pred cccCCEEEEEec
Q 001245 496 AHSSPVIKMAVG 507 (1115)
Q Consensus 496 gH~~~V~sva~d 507 (1115)
.-...|.++.++
T Consensus 103 s~e~~is~~~w~ 114 (665)
T KOG4640|consen 103 SVETDISKGIWD 114 (665)
T ss_pred ccccchheeecc
Confidence 223344444443
No 350
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=92.21 E-value=28 Score=46.19 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=69.6
Q ss_pred ceEEEEEcCCCc-EEEEeC----C--CeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeec---ccEEEEEeCCC
Q 001245 421 RTEALTTSIDGM-IWTGGA----N--GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYM---NGIVQVLDLEG 488 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~----D--gtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~---DGtIrlWD~~G 488 (1115)
.-..|.+-.||. +|..+. . +.||+|+-+|++..+-+.-.+--.+++ |.|.+||+.-. .-.|..|..+|
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 334577778887 454433 2 589999999986665543222223445 89999999874 45788898876
Q ss_pred ccccccc----cccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 489 NLLGGWV----AHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 489 ~ll~~l~----gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
-....|. .....|..|++ |+..||---.|. |.+|-..
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 5444332 34567888885 677777655554 9999764
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.43 Score=54.94 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=70.6
Q ss_pred ccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEec---CCEEEeeecccEEEEEeCC--
Q 001245 416 GDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTF---GSQIWVGYMNGIVQVLDLE-- 487 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~d---G~~LaSGs~DGtIrlWD~~-- 487 (1115)
.++..-|..+++||... +..++.+++|+|-|+ +..++.++..| ..+++.+.| -.+|+.|...|.|.++|+.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 35566788899998755 678999999999999 67778888888 889999854 5799999999999999985
Q ss_pred Ccccccccc--ccCCEEEEE
Q 001245 488 GNLLGGWVA--HSSPVIKMA 505 (1115)
Q Consensus 488 G~ll~~l~g--H~~~V~sva 505 (1115)
...+..+.+ -..+|.+|+
T Consensus 269 ~~~~~e~~a~~t~~pv~~i~ 288 (463)
T KOG1645|consen 269 EGPLMELVANVTINPVHKIA 288 (463)
T ss_pred CchHhhhhhhhccCcceeec
Confidence 345566655 245677776
No 352
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=91.60 E-value=0.53 Score=58.03 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=82.5
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e------cC------CEEEeeecccEEEEEeC
Q 001245 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T------FG------SQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~------dG------~~LaSGs~DGtIrlWD~ 486 (1115)
-.++-+++.|.+|-||.. .|-+-|. +-+.++++..|...|++|. | ++ -+||+|...|.|-|||.
T Consensus 18 ~~A~Dw~~~GLiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 345668899999888765 6778887 8899999999999999997 1 23 37899999999999997
Q ss_pred C-CccccccccccCCEEEEEe----c-C-CEEEeecCCCceEEeeecCCC
Q 001245 487 E-GNLLGGWVAHSSPVIKMAV----G-A-GYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 487 ~-G~ll~~l~gH~~~V~sva~----d-g-~~laSgS~DgtIRlWdl~~p~ 529 (1115)
. +..+-.+.-|..+|..+.+ | . ..|+.-..-.+|-+|+..+++
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence 6 6666667778888888763 3 3 345555667789999887753
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.44 E-value=0.61 Score=50.37 Aligned_cols=105 Identities=19% Similarity=0.220 Sum_probs=63.7
Q ss_pred EEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEc-CCCCEEEEEeCCCeEE
Q 001245 139 VCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD-EASGVVWSGHRDGRIM 216 (1115)
Q Consensus 139 ~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s-~dg~~LaSGS~DgtIr 216 (1115)
...+..+.. +.|+.|.+|+... +-.. .+..++. ..++.|+... .++.+.++|..||.||
T Consensus 67 ~~~~~~~~vG~~dg~v~~~n~n~-~g~~-------------~d~~~s~-----~e~i~~~Ip~~~~~~~~c~~~~dg~ir 127 (238)
T KOG2444|consen 67 VTASAKLMVGTSDGAVYVFNWNL-EGAH-------------SDRVCSG-----EESIDLGIPNGRDSSLGCVGAQDGRIR 127 (238)
T ss_pred cccCceEEeecccceEEEecCCc-cchH-------------HHhhhcc-----cccceeccccccccceeEEeccCCcee
Confidence 333455555 5899888887541 1000 1111111 2344444333 4577999999999999
Q ss_pred EEECCCCCCCCCCCCcceEEe-ecCC-CCEEEEEEeCCCc-EEEE--eCCCcEEEEeCCC
Q 001245 217 CWKMNARLLDSDDGFGEVLSW-QAHR-GPVLSLCISSYGD-LWSG--SEGGGIKIWPWEA 271 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l-~GH~-~~V~sVafSpdG~-L~Sg--S~DgtIrvWdl~t 271 (1115)
.|+....+ .... -.|. .++.....+..++ |+++ |.|.++|.|+++.
T Consensus 128 ~~n~~p~k---------~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 128 ACNIKPNK---------VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccCc---------eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 99987521 2222 3455 5666666655555 6677 8999999999865
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=2.1 Score=51.22 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeEE-eecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 421 ~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~t-l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
.-.|.+...+|.|+.||.+|.|||||-.|..-.| |.+-..+|.-|. .||++|+..+ +.++.|-|+
T Consensus 432 nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 4567888899999999999999999997755444 666677888776 7899887665 557777775
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=89.85 E-value=2.6 Score=40.85 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=42.9
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeC
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl 269 (1115)
.-|+.||.|..||+|+-+. .+.++.. .+.|++++-...++++-|-.+|||-+++-
T Consensus 16 ~eLlvGs~D~~IRvf~~~e----------~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE----------IVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCCc----------EEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 5688899999999998663 2333433 45788888888788888999999998875
No 356
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.81 E-value=0.25 Score=61.27 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=82.5
Q ss_pred cccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEe--cCCEEEeee-ccc-EEEEEeCC-
Q 001245 415 FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT--FGSQIWVGY-MNG-IVQVLDLE- 487 (1115)
Q Consensus 415 l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~--dG~~LaSGs-~DG-tIrlWD~~- 487 (1115)
|..+...-+|++||.+.. |+.|+-.|.||++++ +|.-.....+|..+|+-|.| ||.++.+.+ .+. -..+|++.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 445666778899998876 899999999999999 89999999999999999985 787665544 333 57899985
Q ss_pred -CccccccccccCCEEEEEecCC----EEEeecCCCceEEeeecCCCCCchhhH
Q 001245 488 -GNLLGGWVAHSSPVIKMAVGAG----YIFTLANHGGIRGWNVTSPGPLDSILC 536 (1115)
Q Consensus 488 -G~ll~~l~gH~~~V~sva~dg~----~laSgS~DgtIRlWdl~~p~pld~~i~ 536 (1115)
+....++.+-. ++.|... .+-+.+ ..+-++|+.+..|++..+.
T Consensus 1177 ~~~~~Hsf~ed~----~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1177 TGGPRHSFDEDK----AVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred ccCccccccccc----eeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcC
Confidence 55656665432 3444322 122333 3477899998777655443
No 357
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=89.64 E-value=2.9 Score=46.20 Aligned_cols=80 Identities=11% Similarity=-0.031 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EE-EEeCCCcEEEEe
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LW-SGSEGGGIKIWP 268 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~-SgS~DgtIrvWd 268 (1115)
..-.|..|+......|+|+.||++.+||+..-. ........+-..|.|+|..+.||+.|. |+ -.-.=+.+.|-|
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~---tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA---TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccc---cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 344689999999999999999999999986411 111111222345899999999999884 33 222335688888
Q ss_pred CCCcce
Q 001245 269 WEAIEK 274 (1115)
Q Consensus 269 l~t~~~ 274 (1115)
+.++..
T Consensus 281 ~R~~~~ 286 (344)
T KOG4532|consen 281 TRNYVN 286 (344)
T ss_pred cccCce
Confidence 887543
No 358
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.39 E-value=14 Score=46.79 Aligned_cols=125 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC--CCCEEEEEEeCCCcE-EEEeCCCcEEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYGDL-WSGSEGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH--~~~V~sVafSpdG~L-~SgS~DgtIrvW 267 (1115)
..|+.+++++.+-+.+|-|-.||+|....-+-- .... .+.---| .+|||.++|-.+|+. +=...-..|.++
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~-----RDrg-sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y 198 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL-----RDRG-SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLY 198 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcch-----hccc-cceeeeccCCCCceeeEEecCCceeEEEEecceeEEE
Confidence 568899999999999999999999988853210 0001 1111234 679999999999872 333344568888
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~t 347 (1115)
.+......+. .+..|+ ..+.|..+++....+..+++..+.+||......-.+
T Consensus 199 ~l~gr~p~~~------------------~ld~~G----------~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 199 SLSGRTPSLK------------------VLDNNG----------ISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EecCCCccee------------------eeccCC----------ccceeeecCCCCccEEEecCceEEEEcCCCcceeee
Confidence 8864321110 111222 345666666666656677777888999876555555
Q ss_pred Ee
Q 001245 348 FN 349 (1115)
Q Consensus 348 l~ 349 (1115)
|.
T Consensus 251 f~ 252 (933)
T KOG2114|consen 251 FE 252 (933)
T ss_pred ec
Confidence 54
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.17 E-value=41 Score=37.38 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeE-EeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-Cccccccccc
Q 001245 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQ-DFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1115)
Q Consensus 421 ~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~-tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH 497 (1115)
.+..+..+.+..|+. .|..-.+-|..|+..+ ..-.-.....+++....+|+.-+.++ |.||++. |++++++.++
T Consensus 191 ~~~~~~~~~~e~Ll~--~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 191 PLGIFQLSDNEFLLC--YDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEeCCceEEEE--ecceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 344444554433442 3555566677887665 11122345667777778888877755 9999986 8887777654
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.03 E-value=59 Score=39.03 Aligned_cols=49 Identities=14% Similarity=0.395 Sum_probs=37.9
Q ss_pred eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCC
Q 001245 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 214 tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t 271 (1115)
.|++++..+... . ...|.. +.|.++.|+.+-+|+.-..||++++.|+..
T Consensus 62 ~I~iys~sG~ll------~-~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGKLL------S-SIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCCEe------E-EEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 599999886211 1 234554 899999999987788888999999999864
No 361
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.97 E-value=0.76 Score=58.77 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=55.9
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE-----ecCCEEEeeecccEEEEEeC
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-----TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla-----~dG~~LaSGs~DGtIrlWD~ 486 (1115)
.++|.+++|+.||+ ++.|-.+|.|.+||+ ++..++.+.-|..+++.+- .++..+.++..-|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 46899999999999 578999999999999 8899999999888888776 24567899988886 6764
No 362
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=88.69 E-value=4.9 Score=50.07 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=64.1
Q ss_pred cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE-----ecC-CEEEeeecccEEEEEeCC-CccccccccccCCEEE
Q 001245 432 MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC-----TFG-SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1115)
Q Consensus 432 ~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla-----~dG-~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s 503 (1115)
.||++...|.|.+||. .+..+-.+..|.++|..++ .+. ..|+.-....+|.+|+.. |+..-....-.....+
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 3678888899999999 8888888999999999988 244 466666778899999976 8876665555555555
Q ss_pred EEe---cCCEEEeecCCCceEE
Q 001245 504 MAV---GAGYIFTLANHGGIRG 522 (1115)
Q Consensus 504 va~---dg~~laSgS~DgtIRl 522 (1115)
+.+ |.+.+.-.+..|.+-+
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~ 182 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLS 182 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEE
Confidence 663 4454433333343333
No 363
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.33 E-value=25 Score=42.94 Aligned_cols=99 Identities=20% Similarity=0.400 Sum_probs=62.6
Q ss_pred CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001245 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 142 ~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~ 221 (1115)
.++||.|.|..|.+-+.+.-... ...++.+ ...|+.+.-|.+| .+|-|+..|..|.=-..
T Consensus 216 qg~LWVGTdqGv~~~e~~G~~~s---------------n~~~~lp----~~~I~ll~qD~qG-~lWiGTenGl~r~~l~r 275 (671)
T COG3292 216 QGRLWVGTDQGVYLQEAEGWRAS---------------NWGPMLP----SGNILLLVQDAQG-ELWIGTENGLWRTRLPR 275 (671)
T ss_pred cCcEEEEeccceEEEchhhcccc---------------ccCCCCc----chheeeeecccCC-CEEEeecccceeEecCC
Confidence 78999999999999876642111 1223333 3456666666665 57889988866543333
Q ss_pred CCCCCCCCCCcceEEeecC--CCCEEEEEEeCCCcEEEEeCCCcEEEEe
Q 001245 222 ARLLDSDDGFGEVLSWQAH--RGPVLSLCISSYGDLWSGSEGGGIKIWP 268 (1115)
Q Consensus 222 ~~~~~~~~~~~~~~~l~GH--~~~V~sVafSpdG~L~SgS~DgtIrvWd 268 (1115)
.+ .. ....+-| -..|.++-...+|.||.++.++.+++=+
T Consensus 276 q~-------Lq-~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 276 QG-------LQ-IPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred CC-------cc-ccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 21 11 1112223 3468888888999999999998766543
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=88.24 E-value=3.9 Score=52.42 Aligned_cols=93 Identities=22% Similarity=0.298 Sum_probs=64.6
Q ss_pred cEEEEeCCCeEEEEcC--CCCeeEEeecC----CCcEEEEEec-CCEEEeeecccEEEEEeCCCccc-cccccccCCEEE
Q 001245 432 MIWTGGANGLLLQWDP--NGNRLQDFQYL----PFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLL-GGWVAHSSPVIK 503 (1115)
Q Consensus 432 ~laSGS~DgtIklWD~--tG~~l~tl~gH----~~~V~sla~d-G~~LaSGs~DGtIrlWD~~G~ll-~~l~gH~~~V~s 503 (1115)
..+.|-.++.+-.||. .|+.+-.-..| ....+|+|.+ ..+||+||.+|.|||+|.-|+.. ..|.|-..+|++
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 4677888999999998 56433222222 2357788854 57999999999999999766443 345576789999
Q ss_pred EE--ecCCEEEeecCCCceEEeee
Q 001245 504 MA--VGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 504 va--~dg~~laSgS~DgtIRlWdl 525 (1115)
|. .||++|+... +.-+-|.+.
T Consensus 624 iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEee-cceEEEEEE
Confidence 87 5999866432 334555554
No 365
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.59 E-value=36 Score=44.94 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=55.2
Q ss_pred CeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeee---cccEEEEEeCCCc----cccccccccCCEEEEEe--cC
Q 001245 440 GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGY---MNGIVQVLDLEGN----LLGGWVAHSSPVIKMAV--GA 508 (1115)
Q Consensus 440 gtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs---~DGtIrlWD~~G~----ll~~l~gH~~~V~sva~--dg 508 (1115)
++|++||.+|.+-.+-..-.+.=.+++ |.|..+|+-. +|+.|.++..+|- ..-.+..-...|..+++ ++
T Consensus 222 RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 222 RKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 899999998754333221111112444 8899888754 5678999997763 33344454555888886 56
Q ss_pred CEEEe---ecCCCceEEeeec
Q 001245 509 GYIFT---LANHGGIRGWNVT 526 (1115)
Q Consensus 509 ~~laS---gS~DgtIRlWdl~ 526 (1115)
..|+. ......|++|-+.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CceeeeecccccceEEEEEec
Confidence 66664 4444459999874
No 366
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.04 E-value=28 Score=43.40 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=74.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcE-EEEeCCCcEEEEeCCCccee
Q 001245 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 197 la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~t~~~~ 275 (1115)
-.+|..+++|+-|+.-|.+.+++-.++.. ..+...|-.+.+..+++|++.++ |.|+..|.|-+..+....+.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~-------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEM-------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhh-------hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34566789999999999999999876432 12233445566777788888775 67888888888877552211
Q ss_pred eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCC
Q 001245 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDART 341 (1115)
Q Consensus 276 l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~t 341 (1115)
+.... . ..+. .....|.+++.+.++.+++++.+ ++|.+--+.+
T Consensus 112 -----~~~~~----------t-~~d~-------~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 -----DLDYV----------T-PCDK-------SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -----cceee----------c-cccc-------cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 10000 0 0111 01256889999999999999875 5666555554
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=86.68 E-value=66 Score=37.09 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=60.7
Q ss_pred CCCceEEEEEcCCCc-EEEE-eCCCeEEEEcCC---CCe-----eEEeecCCCcEEEEE--ecCCEEEeeeccc-EEEEE
Q 001245 418 DNRRTEALTTSIDGM-IWTG-GANGLLLQWDPN---GNR-----LQDFQYLPFAVQCLC--TFGSQIWVGYMNG-IVQVL 484 (1115)
Q Consensus 418 h~~~V~aVa~S~Dg~-laSG-S~DgtIklWD~t---G~~-----l~tl~gH~~~V~sla--~dG~~LaSGs~DG-tIrlW 484 (1115)
+....+.|+||||++ ++.+ +..+.|.-|+.. |.. ...+..+.+.--.++ .+|.+-+++..+| .|.+|
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 345567899999996 5544 334777777663 321 111222222222233 4555544554554 89999
Q ss_pred eCCCccccccccccCCEEEEEecC---CEEEeec
Q 001245 485 DLEGNLLGGWVAHSSPVIKMAVGA---GYIFTLA 515 (1115)
Q Consensus 485 D~~G~ll~~l~gH~~~V~sva~dg---~~laSgS 515 (1115)
+.+|+++....-+...+.+++|.| +.|+..|
T Consensus 241 ~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 999999988887777888888865 6555443
No 368
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.41 E-value=60 Score=36.21 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=36.1
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCE-EEEEEeC-CCcEEEEeCCCcEE
Q 001245 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-LSLCISS-YGDLWSGSEGGGIK 265 (1115)
Q Consensus 198 a~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V-~sVafSp-dG~L~SgS~DgtIr 265 (1115)
..|+++++|+-||.|++...-|..+. +.+...+ -.+.+ .+=++.| ++.|+.++..|.|-
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~--------~cVyksk-cgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTY--------GCVYKSK-CGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred EEcCCCceEEEecCCCcEEEeccccc--------ceEEecc-cCCceeccceecCCCceEEEEeccceEE
Confidence 35789999999999999999888752 2232222 11222 1223445 45677666666554
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.98 E-value=4.9 Score=50.38 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCC
Q 001245 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 194 V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~ 270 (1115)
+.++.+.|.--+||+|..-|.+-+|...+ ++.++. .-|..+|..+.||++|. |+|+-.=|.|-+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~---------~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNT---------TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCC---------ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 34578888888999999999999999876 334444 56999999999999998 8899999999999876
No 370
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.60 E-value=38 Score=41.48 Aligned_cols=111 Identities=20% Similarity=0.425 Sum_probs=68.7
Q ss_pred ccccccceeeEEEEEe-CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCC
Q 001245 126 LRETQIGCFLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG 204 (1115)
Q Consensus 126 l~~~~~~~~l~~l~~~-~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~ 204 (1115)
.|+...+..+.+|..+ ++.+|+|.++.+-.+|..+|+.... +.-|+. .++.++..|-+|
T Consensus 158 ~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql-------------~s~~~d------k~I~al~~d~qg- 217 (671)
T COG3292 158 VRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQL-------------ASPPLD------KAINALIADVQG- 217 (671)
T ss_pred ccccccCccceeeeeeccCcEEEecCCcceEEccccceEEEc-------------CCCcch------hhHHHHHHHhcC-
Confidence 3455666777788877 8899999999999999888776652 111221 244556556554
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe--ecCCCCEEEEEEeCCCcEEEEeCCCcEEE
Q 001245 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKI 266 (1115)
Q Consensus 205 ~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l--~GH~~~V~sVafSpdG~L~SgS~DgtIrv 266 (1115)
.||-|..+| |.+-+.++-. ...+ .=-.+-|+.+.=...|.+|-|++.|..|.
T Consensus 218 ~LWVGTdqG-v~~~e~~G~~---------~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~ 271 (671)
T COG3292 218 RLWVGTDQG-VYLQEAEGWR---------ASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRT 271 (671)
T ss_pred cEEEEeccc-eEEEchhhcc---------ccccCCCCcchheeeeecccCCCEEEeecccceeE
Confidence 578898888 4455544311 0000 00134566665555677998988875543
No 371
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=84.59 E-value=1.6 Score=41.87 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=7.0
Q ss_pred eEEEecccccccC
Q 001245 764 MVIFLGDFNYRLD 776 (1115)
Q Consensus 764 ~vfw~GDlNyRi~ 776 (1115)
.++++||||..-.
T Consensus 32 ~~Ii~GDFN~~~~ 44 (119)
T PF14529_consen 32 PIIIGGDFNAHHP 44 (119)
T ss_dssp SEEEEEE-----G
T ss_pred CEEEEeECCCCch
Confidence 7999999999654
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=83.64 E-value=90 Score=37.93 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEE
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvW 267 (1115)
....+.++|+|+.++. ..||.-.+..... .+.. ..+.-...+|.+.++.|.-...++|++.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~--------~r~k-----~~G~g~~~vw~~~n~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALA--------WRNK-----AFGSGLSFVWSSRNRYAVLESSSTIKIY 94 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTT--------TEEE-----EEEE-SEEEE-TSSEEEEE-TTS-EEEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccC--------Cccc-----ccCceeEEEEecCccEEEEECCCeEEEE
Confidence 4568999999999988 5566666665321 1111 1233456788887888777778899996
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=81.29 E-value=67 Score=40.51 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=37.6
Q ss_pred EEEEEcCCCcEEEEeCCCeEEEEcC--CCCeeEEeec--CCCcEEEEEecCCEEEeeecccEEEE
Q 001245 423 EALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQY--LPFAVQCLCTFGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 423 ~aVa~S~Dg~laSGS~DgtIklWD~--tG~~l~tl~g--H~~~V~sla~dG~~LaSGs~DGtIrl 483 (1115)
..+.+..++.|+.+..++...+|-+ +|.....+.+ ....|.+|+.....|+.+..+|.+++
T Consensus 500 ~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 500 VSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 4566777877766655555555654 6755443333 25678888855556777777775544
No 374
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=80.30 E-value=1.2e+02 Score=34.92 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=46.1
Q ss_pred EEEeCCCeEEEEcCCCCeeEEeec--CCCcEEEEE--e------cCCEEEeeecccEEEEEeCC-CccccccccccC
Q 001245 434 WTGGANGLLLQWDPNGNRLQDFQY--LPFAVQCLC--T------FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (1115)
Q Consensus 434 aSGS~DgtIklWD~tG~~l~tl~g--H~~~V~sla--~------dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~ 499 (1115)
+.|..-|.|-++|.+|++++.+.. .-++-+.|+ | .|.+|+---.||+|-.+|.. |+.+..+..-.+
T Consensus 216 v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 216 VAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 445667899999999999998842 223344454 2 46666665679999999975 877666665443
No 375
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.76 E-value=7.3 Score=48.25 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=72.0
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
++-|.+.+++--++..... .+.+. .+.+..+.++++..++|.|+..|.|-+.-+..+..
T Consensus 52 sS~G~lyl~~R~~~~~~~~------------------~~~~~-~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-- 110 (726)
T KOG3621|consen 52 SSAGSVYLYNRHTGEMRKL------------------KNEGA-TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-- 110 (726)
T ss_pred cccceEEEEecCchhhhcc------------------cccCc-cceEEEEEecchhHhhhhhcCCceEEeehhhccCC--
Confidence 4667888888777665431 12122 45666778889999999999999998887764221
Q ss_pred CCCCcceEEe-ecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 228 DDGFGEVLSW-QAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 228 ~~~~~~~~~l-~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
........+ +-|...|+++++++||. ++||-.-|+|-+=.+++
T Consensus 111 -~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 -RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 001111112 34789999999999996 99999999998887765
No 376
>PRK02888 nitrous-oxide reductase; Validated
Probab=79.55 E-value=48 Score=41.60 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=45.2
Q ss_pred CceEEEEEcCCCc-E-EEEeCCCeEEEEcC-CCC------------eeEEeecCCCcE-EEEEecCCEEEeeecccEEEE
Q 001245 420 RRTEALTTSIDGM-I-WTGGANGLLLQWDP-NGN------------RLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-l-aSGS~DgtIklWD~-tG~------------~l~tl~gH~~~V-~sla~dG~~LaSGs~DGtIrl 483 (1115)
.....+++||||+ + +++..+.+|-+.|+ +.+ ...+..-..++. +.+..+|....|-..|..|-.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEE
Confidence 3556789999998 3 56777999999999 432 233333334442 333345665556668999999
Q ss_pred EeCC
Q 001245 484 LDLE 487 (1115)
Q Consensus 484 WD~~ 487 (1115)
||++
T Consensus 401 wn~~ 404 (635)
T PRK02888 401 WNIE 404 (635)
T ss_pred EehH
Confidence 9975
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=7.1 Score=47.80 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEE-EEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL-SLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~-sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
..+.-+.++|-=.+||.+-.+|.|-+-.++- ..+.++.-|...|+ ++++-|||+ |+-|=.||||++-|.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 3466788899888999999999777666553 23444444656666 999999999 567889999999999
Q ss_pred CCccee
Q 001245 270 EAIEKA 275 (1115)
Q Consensus 270 ~t~~~~ 275 (1115)
+++...
T Consensus 92 e~~~~l 97 (665)
T KOG4640|consen 92 EKGGRL 97 (665)
T ss_pred cCCCce
Confidence 886544
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=78.29 E-value=5.9 Score=32.44 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~ 222 (1115)
...|.+++++|...+||.|..||.|.++.++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45799999999999999999999999999864
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.71 E-value=9.1 Score=46.09 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=70.3
Q ss_pred eEEEEEcCCCc--------EEEEeCCCeEEEEcC--CCC-eeEEeecCCC----cEEEEEe-cCCEEEeeecccEEEEEe
Q 001245 422 TEALTTSIDGM--------IWTGGANGLLLQWDP--NGN-RLQDFQYLPF----AVQCLCT-FGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 422 V~aVa~S~Dg~--------laSGS~DgtIklWD~--tG~-~l~tl~gH~~----~V~sla~-dG~~LaSGs~DGtIrlWD 485 (1115)
|+-+.+.||.+ -+.|=.|+.|--||+ .|. .|..-++|.. .-.|.+. ...+||+||.+|.|||+|
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYd 457 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYD 457 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeeh
Confidence 55556666642 345777889999998 565 5555555543 3567774 457999999999999999
Q ss_pred CCCccc-cccccccCCEEEEE--ecCCEEEeecCCCceEEeee
Q 001245 486 LEGNLL-GGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 486 ~~G~ll-~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl 525 (1115)
.-|+.. ..|.|-..+|..|. .||++|+... +..+-+=++
T Consensus 458 ri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 458 RIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 766443 45677778898876 5999866432 445555443
No 380
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=76.29 E-value=10 Score=45.83 Aligned_cols=106 Identities=16% Similarity=0.110 Sum_probs=71.2
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCC-cEEEEEecCCEEEeeec-----------ccEEEEEeCC-C
Q 001245 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGYM-----------NGIVQVLDLE-G 488 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~-~V~sla~dG~~LaSGs~-----------DGtIrlWD~~-G 488 (1115)
-|.+||-|+ |+|-..-| |.+|-. +=..++.|. |.+ .-.++.|.-+||++=+. ...+.|||+. |
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 366889887 67766665 889976 434556654 433 22334477888887552 2578999986 8
Q ss_pred cccccccc--ccCCEEEEE---ecCCEEEeecCCCceEEeeecCCCCCc
Q 001245 489 NLLGGWVA--HSSPVIKMA---VGAGYIFTLANHGGIRGWNVTSPGPLD 532 (1115)
Q Consensus 489 ~ll~~l~g--H~~~V~sva---~dg~~laSgS~DgtIRlWdl~~p~pld 532 (1115)
.+.++|.. -...++.+. .|++|+|-... .+|-|++..+..++|
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld 340 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD 340 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeec
Confidence 88888877 344555554 58999987665 568888866555544
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.77 E-value=41 Score=38.70 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=44.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC----CCCEEEEEEeCCCcEEEEeCCCcEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH----~~~V~sVafSpdG~L~SgS~DgtIrv 266 (1115)
.+.+..+..+++|++|+.++.-.-.+.||-.. ..|+-| ...|.+|.|+|++.|+-...+|-|+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~------------~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ------------TTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQF 211 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-------------SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCC------------ccceEEccCccceehhceecCCCCEEEEeCCcEEEE
Confidence 45678888899999999988888888998653 124444 56899999999998887778998887
Q ss_pred Ee
Q 001245 267 WP 268 (1115)
Q Consensus 267 Wd 268 (1115)
=+
T Consensus 212 s~ 213 (302)
T PF14870_consen 212 SD 213 (302)
T ss_dssp EE
T ss_pred cc
Confidence 76
No 382
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=72.87 E-value=2.7 Score=53.02 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=61.5
Q ss_pred EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEE-------------EEecCCEEEeeecccEEEEEeC--CC----ccccc
Q 001245 433 IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQC-------------LCTFGSQIWVGYMNGIVQVLDL--EG----NLLGG 493 (1115)
Q Consensus 433 laSGS~DgtIklWD~tG~~l~tl~gH~~~V~s-------------la~dG~~LaSGs~DGtIrlWD~--~G----~ll~~ 493 (1115)
+-.|-.+++|++-..+......+.+|+.+++. |.+||+.+|.++.||.++.|.+ .| +|+..
T Consensus 198 ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred eeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 44455567777766644333556667766553 4489999999999999999984 35 47889
Q ss_pred ccccc-CCEEEEEec---------CC--EEEeec-CCCceEEeeec
Q 001245 494 WVAHS-SPVIKMAVG---------AG--YIFTLA-NHGGIRGWNVT 526 (1115)
Q Consensus 494 l~gH~-~~V~sva~d---------g~--~laSgS-~DgtIRlWdl~ 526 (1115)
|+-|. .+-.|.-++ |. ++++++ ....+++|.-.
T Consensus 278 wkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred cCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 99998 444443332 22 344444 45678888743
No 383
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.75 E-value=1.7e+02 Score=32.88 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC-CCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 203 g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH-~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
..+++-||..+.++.-|..+|+ ..|+.- .+.|-+-+.--...++-|-..|.+.+-+..|+++...+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~----------~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGN----------LIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCc----------EEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 5678888888888888877643 234332 23343333332223667777888888888887655332110
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEE-EEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCC
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL-LSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG 352 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~l-as~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~ 352 (1115)
..|++- ..+.++..+|.++ |+++..-|.++..++-..+-.|
T Consensus 93 ------------------------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 93 ------------------------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ------------------------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 111111 1355677888776 6888899998888876654433
No 384
>PRK02888 nitrous-oxide reductase; Validated
Probab=71.69 E-value=1.3e+02 Score=37.82 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=26.8
Q ss_pred CEEEEEEeCCCc-E-EEEeCCCcEEEEeCCCccee
Q 001245 243 PVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 243 ~V~sVafSpdG~-L-~SgS~DgtIrvWdl~t~~~~ 275 (1115)
....|++||||+ + +++..+.+|-|-|+++.+..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 456899999998 4 57778999999999886543
No 385
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.12 E-value=48 Score=43.89 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=47.3
Q ss_pred EEEEcCCCCEEEEE---eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcE-EE---EeCCCcEEEEe
Q 001245 196 CMVGDEASGVVWSG---HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDL-WS---GSEGGGIKIWP 268 (1115)
Q Consensus 196 ~la~s~dg~~LaSG---S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L-~S---gS~DgtIrvWd 268 (1115)
|+++-|.|.++|+= ..|++|+++.-++ .........+..-...|..|+|+.++.+ +. ......|++|-
T Consensus 246 ~LsWkPsgs~iA~iq~~~sd~~IvffErNG-----L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 246 SLSWKPSGSLIAAIQCKTSDSDIVFFERNG-----LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred ceeecCCCCeEeeeeecCCCCcEEEEecCC-----ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 78999999999886 3566899998664 1111112223333455999999999984 32 34455599998
Q ss_pred CCC
Q 001245 269 WEA 271 (1115)
Q Consensus 269 l~t 271 (1115)
...
T Consensus 321 ~~N 323 (1265)
T KOG1920|consen 321 TGN 323 (1265)
T ss_pred ecC
Confidence 765
No 386
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.11 E-value=11 Score=40.90 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=40.8
Q ss_pred ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEEEEE
Q 001245 947 QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHH 1017 (1115)
Q Consensus 947 ~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~~~~ 1017 (1115)
+....|+|+|+... ...|.+-|- -|.+..|.|..|+|.||++++|.+.+
T Consensus 26 ~~~~~l~l~N~t~~-~vaFKvktT---------------------~p~~y~VrP~~G~i~p~~t~~i~v~~ 74 (218)
T KOG0439|consen 26 QVKCSLTLKNPTKL-RVAFKVKTT---------------------APKLYCVRPNGGVIDPGSTVEIEVTH 74 (218)
T ss_pred eEEEEEEEecCCCC-ceEEEEEcC---------------------CCCeEEEcCCcceECCCCcEEEEEEe
Confidence 34677999999665 788998862 26788999999999999999999963
No 387
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.30 E-value=42 Score=40.74 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=69.0
Q ss_pred eeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEE-cCCCCeeEEeecCCCcEEEE
Q 001245 387 SSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQW-DPNGNRLQDFQYLPFAVQCL 465 (1115)
Q Consensus 387 ~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklW-D~tG~~l~tl~gH~~~V~sl 465 (1115)
.++.+.|.++.+++...+........+.-....+.-...+|.+++..|+-...++|++. +.+.+....+.-. ..+..|
T Consensus 36 ~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I 114 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI 114 (443)
T ss_dssp SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred eeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence 45667777777666544443333321110111122334567778888887778899996 4544443333321 234444
Q ss_pred EecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 466 CTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 466 a~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
-. |..|...+.+ .|.+||.+ ++.++..... .|..|.+ +|++++-.+.| +|.+++.
T Consensus 115 f~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 115 FG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp E--SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred Ec-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 44 8888887666 79999997 7888877643 2677765 46777776644 5666664
No 388
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.17 E-value=36 Score=45.36 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEcC-----CC---C-ee-------------E---Eee-cCCCcEEEEEecC--CE
Q 001245 420 RRTEALTTSIDGMIWTGGANGLLLQWDP-----NG---N-RL-------------Q---DFQ-YLPFAVQCLCTFG--SQ 471 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~DgtIklWD~-----tG---~-~l-------------~---tl~-gH~~~V~sla~dG--~~ 471 (1115)
..|.+++...+|+|.-|+.|| .||.+ +| + |- . .+. .|.++|..|+.|. ..
T Consensus 179 ~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred ceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 467888889999998888888 56754 22 1 11 1 122 4667898888664 57
Q ss_pred EEeeecccEEEEEeCC
Q 001245 472 IWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 472 LaSGs~DGtIrlWD~~ 487 (1115)
|++=+..|+|++||+.
T Consensus 257 lY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIG 272 (1311)
T ss_pred eeeeccCceEEEEEcc
Confidence 8889999999999985
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=69.02 E-value=2.4e+02 Score=33.07 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=32.0
Q ss_pred EEEEEeCC-CccccccccccCCEEEEEe--cCC-EEEee-cCCCceEEeeecCC
Q 001245 480 IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAG-YIFTL-ANHGGIRGWNVTSP 528 (1115)
Q Consensus 480 tIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~-~laSg-S~DgtIRlWdl~~p 528 (1115)
.|.++|++ ++.+..+..- .++.+|++ |.+ +|+.. ..++++.+||..+.
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 46677776 7888877631 23656664 544 56554 46899999998874
No 390
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=67.21 E-value=3.2e+02 Score=33.98 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=34.4
Q ss_pred ccEEEEEeCC-CccccccccccCCEEE-EEecCCEEEeecCCCceEEeeecCCCCC
Q 001245 478 NGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 478 DGtIrlWD~~-G~ll~~l~gH~~~V~s-va~dg~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
-|.|.-||+. |+.+-.........-+ +...|..++.++.||.++.+|..+..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 4678888875 7654433321111112 3456678888888999999999886443
No 391
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=65.30 E-value=27 Score=41.89 Aligned_cols=39 Identities=31% Similarity=0.338 Sum_probs=34.9
Q ss_pred cCCEEEeeecccEEEEEeCCCccccccccccCCEEEEEe
Q 001245 468 FGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV 506 (1115)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~ 506 (1115)
|...+++|..+|.|+++..+|.++..=.-|.++|.+|..
T Consensus 78 dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~ 116 (415)
T PF14655_consen 78 DWTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKC 116 (415)
T ss_pred CcEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEe
Confidence 357999999999999999999988877789999999974
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=64.77 E-value=14 Score=30.17 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEcCCCCee
Q 001245 420 RRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRL 452 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l 452 (1115)
..|.+++++|..- ||.|+.||.|.++.++++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 3577888999876 68899999999998877654
No 393
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=63.06 E-value=84 Score=38.10 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=48.0
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeEE-eecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 422 TEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~t-l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
-.+.+....|.||.||.-|-|||+|.-|....+ +.+-..+|.-|. .+|++|.+.+.. ++.|-|+.
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 344556677899999999999999986644433 455556776665 689988887765 68888864
No 394
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=61.83 E-value=3.9 Score=49.97 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred CCCceEEEEEcCCC-c-EEEEeC----CCeEEEEcC-CC--CeeEE--eec-CCCcEEEEE--ecCCEEEeeecccEEEE
Q 001245 418 DNRRTEALTTSIDG-M-IWTGGA----NGLLLQWDP-NG--NRLQD--FQY-LPFAVQCLC--TFGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 418 h~~~V~aVa~S~Dg-~-laSGS~----DgtIklWD~-tG--~~l~t--l~g-H~~~V~sla--~dG~~LaSGs~DGtIrl 483 (1115)
+....+++|+++-. . ||+|-. |..++|||+ ++ .+..+ |.+ -.....+++ -+-+.+.+|.....|.+
T Consensus 101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~i 180 (783)
T KOG1008|consen 101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHI 180 (783)
T ss_pred ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhh
Confidence 44556777776542 2 555533 567999999 44 22211 222 223445666 46788999999999999
Q ss_pred EeCCCccccccccccCCEEEEE--e-cCCEEEeecCCCceEEeeecCCCCCchhhHHHhhccccc
Q 001245 484 LDLEGNLLGGWVAHSSPVIKMA--V-GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFL 545 (1115)
Q Consensus 484 WD~~G~ll~~l~gH~~~V~sva--~-dg~~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re~~ 545 (1115)
.|+...+.+...-.+..|..+. + .+.|+++-+ |+.|-+||- +--.++.++..+......
T Consensus 181 fdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~--~rnienpl~~i~~~~N~~ 242 (783)
T KOG1008|consen 181 FDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT--YRNIENPLQIILRNENKK 242 (783)
T ss_pred hhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc--hhhhccHHHHHhhCCCCc
Confidence 9986433222221222233333 2 678888876 999999993 334466666655544443
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.79 E-value=44 Score=36.75 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=63.5
Q ss_pred EEEEEcCCCc-E-EEEeCCCeEEEEcC---CCCe-----eEEeec-----CCC-cEEEEEecCCEEEeeecccEEEEEeC
Q 001245 423 EALTTSIDGM-I-WTGGANGLLLQWDP---NGNR-----LQDFQY-----LPF-AVQCLCTFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 423 ~aVa~S~Dg~-l-aSGS~DgtIklWD~---tG~~-----l~tl~g-----H~~-~V~sla~dG~~LaSGs~DGtIrlWD~ 486 (1115)
+.++++.|.+ + ++-|.+-+|.-||. +|.. +-.++. |.- .=.+|..+|.+.++..+.|+|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 4566766665 3 57778889999983 5633 222222 111 01233345677777778899999997
Q ss_pred C-CccccccccccCCEEEEEecCC----EEEeecCC
Q 001245 487 E-GNLLGGWVAHSSPVIKMAVGAG----YIFTLANH 517 (1115)
Q Consensus 487 ~-G~ll~~l~gH~~~V~sva~dg~----~laSgS~D 517 (1115)
. |+++.+++-.+..|+|.+|.|. +.+|+..+
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 6 9999999988999999999876 34455543
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.07 E-value=43 Score=36.64 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=51.1
Q ss_pred eeEEEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceee------eccCCceEEEEEcCCCCEE
Q 001245 134 FLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKES------VKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 134 ~l~~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s------~~G~~~V~~la~s~dg~~L 206 (1115)
.+-.|.+.+.-|.+ ..+|.+.|||+.++.+.-.. ...+|+... .. ...|..+.++.+|.-|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-----------~Si~pll~~~~~~~~~~-~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP-----------VSIAPLLNSSPVSDKSS-SPNITSCSLTSNGVPI 81 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC-----------ccHHHHhcccccccCCC-CCcEEEEEEcCCCCEE
Confidence 34456777777766 79999999999998766430 123333321 12 4577888888888888
Q ss_pred EEEeCCCeEEEEECC
Q 001245 207 WSGHRDGRIMCWKMN 221 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~ 221 (1115)
++=+ +|..-.|+.+
T Consensus 82 V~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 82 VTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEe-CCCEEEeccc
Confidence 7755 5778888876
No 397
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=57.94 E-value=12 Score=47.58 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=48.7
Q ss_pred ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEE-------------ecCCEEEeecCCCceEEeeecCCCCC
Q 001245 467 TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMA-------------VGAGYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 467 ~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva-------------~dg~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
+...++-.+-.+++|+|.+.+..+..-+++|+.+++.++ +||+.++.++.||.++.|.+.-.|-.
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~ 270 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI 270 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence 345667777789999988876444466778988877653 58999999999999999987654443
No 398
>PRK13616 lipoprotein LpqB; Provisional
Probab=57.66 E-value=4.7e+02 Score=33.09 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEE---EcC-CCC-ee---EEeec-CCCcEEEEE-ecCCEEEeeecccEEEEEeC--C
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQ---WDP-NGN-RL---QDFQY-LPFAVQCLC-TFGSQIWVGYMNGIVQVLDL--E 487 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIkl---WD~-tG~-~l---~tl~g-H~~~V~sla-~dG~~LaSGs~DGtIrlWD~--~ 487 (1115)
.|..+.+|+||. +|.-. ++.|.+ =.. .|. .+ +.+.. -...+.++. ..+..|+++..++...+|-+ +
T Consensus 449 ~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred CcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 467777888886 43322 455555 222 343 11 11222 222346666 33444667776665666764 4
Q ss_pred Ccccccccc--ccCCEEEEEecCCEEEeecCCC
Q 001245 488 GNLLGGWVA--HSSPVIKMAVGAGYIFTLANHG 518 (1115)
Q Consensus 488 G~ll~~l~g--H~~~V~sva~dg~~laSgS~Dg 518 (1115)
|.....+.+ ...+|.+|+...+.++-...++
T Consensus 528 G~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 528 GSNSDALPSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred CccccccCCCCccCceEEEecCCceEEEEcCCc
Confidence 654333344 3678888886655565555555
No 399
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=57.62 E-value=39 Score=27.21 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.7
Q ss_pred eEEccCceeeCCCCeeEEEEE
Q 001245 996 LEVTPATGMIKPDRTAEMSVH 1016 (1115)
Q Consensus 996 L~v~p~~g~i~p~~~~~i~~~ 1016 (1115)
+.++.....|.|||+..|+++
T Consensus 24 t~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 24 TTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred EEeeCCcceECCCCEEEEEEE
Confidence 567777788999999999875
No 400
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=57.30 E-value=91 Score=37.42 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=42.3
Q ss_pred eEEEEcCCCCeeEEeecCCCcEEEEEe-cCCEEEeeecccEEEEEeCCCcc
Q 001245 441 LLLQWDPNGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNL 490 (1115)
Q Consensus 441 tIklWD~tG~~l~tl~gH~~~V~sla~-dG~~LaSGs~DGtIrlWD~~G~l 490 (1115)
.|++|+..|+++.++.--.+.|.++.. +...|++-..||+++++|.-|+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 599999999999987655578989984 56788888899999999987766
No 401
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=55.64 E-value=65 Score=31.42 Aligned_cols=67 Identities=21% Similarity=0.252 Sum_probs=46.4
Q ss_pred eeccCcEEecc-ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEE
Q 001245 936 IVSTNNIIIQN-QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMS 1014 (1115)
Q Consensus 936 ~~~~~~i~~~~-~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~ 1014 (1115)
.+++..|.|.. .....++|.|++.. +..++.--. +.++ .+. ..--+-|-|+|..-.|+||++..|.
T Consensus 3 ~i~~trii~~~~~~~~~i~v~N~~~~-~~~vq~~v~-----~~~~--~~~-----~~~~~~~~vsPp~~~L~pg~~q~vR 69 (122)
T PF00345_consen 3 QISPTRIIFNESQRSASITVTNNSDQ-PYLVQVWVY-----DQDD--EDE-----DEPTDPFIVSPPIFRLEPGESQTVR 69 (122)
T ss_dssp EESSSEEEEETTSSEEEEEEEESSSS-EEEEEEEEE-----ETTS--TTS-----SSSSSSEEEESSEEEEETTEEEEEE
T ss_pred EEccEEEEEeCCCCEEEEEEEcCCCC-cEEEEEEEE-----cCCC--ccc-----ccccccEEEeCCceEeCCCCcEEEE
Confidence 56777778875 45678999999986 777776642 1100 000 0011357899999999999999999
Q ss_pred E
Q 001245 1015 V 1015 (1115)
Q Consensus 1015 ~ 1015 (1115)
|
T Consensus 70 v 70 (122)
T PF00345_consen 70 V 70 (122)
T ss_dssp E
T ss_pred E
Confidence 9
No 402
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=55.63 E-value=10 Score=36.72 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=37.8
Q ss_pred ccceeEEEEEEecCceeeeEEEEeecCCccccc---CCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEEEEEee
Q 001245 945 QNQDTSILRVTNKCGKKDAFYQINCEGQSTVKD---DGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHHED 1019 (1115)
Q Consensus 945 ~~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~~~~~~ 1019 (1115)
++.....|+|+|.|.. ...|.+-..+-.+... +|......+.. ...+....|..-.|.||++.+|++++.-
T Consensus 7 ~~~~~~~itl~N~~~~-~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDK-PVTYTLSHVPVLTDKTDTEEGYSILVPPVP---SISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp -SEEEEEEEEEE-SSS--EEEEEEEE-EEEEEE--ETTEEEEEEEE-------EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CCceEEEEEEEECCCC-CEEEEEeeEEEEeeEeeccCCccccccccc---ceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 4446778999999987 8889887652222221 11110000000 0017778888899999999999999754
No 403
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=55.17 E-value=99 Score=37.20 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=30.4
Q ss_pred EeecCCCCEEEEEEeCCCcEEEEeC-CCcEEEEeCCCcce
Q 001245 236 SWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWPWEAIEK 274 (1115)
Q Consensus 236 ~l~GH~~~V~sVafSpdG~L~SgS~-DgtIrvWdl~t~~~ 274 (1115)
.|...+..+.+|+.+|+++|+..++ =|.|-|+|+.++..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 4556677799999999999876653 37999999988643
No 404
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=53.37 E-value=3.9e+02 Score=32.06 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=76.3
Q ss_pred ccccceEEeccCcEEEEeccc-cc-c----cCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCC-----eeEEeecC--
Q 001245 393 QRSRNAIMGAADAVRRVAAKG-GF-G----DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN-----RLQDFQYL-- 458 (1115)
Q Consensus 393 ~~~~~~~~Gs~d~v~~~~~~g-~l-~----~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~-----~l~tl~gH-- 458 (1115)
+++..++.|..+.+.+-+..| .+ . .....+.++.+.+|+.++..+.+|.+ +|.. .|+ ....+...
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~ 326 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSR 326 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCC
Confidence 445566666666655533332 21 1 22345778889999998877788875 4444 554 23333221
Q ss_pred CCcEEEEE-ecCCEEEeeecccEEEEEeCCCcccccc---ccccCCEEEEEe-cCCEEEeecCCCceEEe
Q 001245 459 PFAVQCLC-TFGSQIWVGYMNGIVQVLDLEGNLLGGW---VAHSSPVIKMAV-GAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 459 ~~~V~sla-~dG~~LaSGs~DGtIrlWD~~G~ll~~l---~gH~~~V~sva~-dg~~laSgS~DgtIRlW 523 (1115)
...++++. .+.+.++.++.+|.|....-.|+.=+.. ..-....++|.+ +++..+..+.+|.|--|
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 13477777 3455566667788888776556432211 222345778885 55667777778877554
No 405
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.10 E-value=2.9e+02 Score=30.74 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=53.7
Q ss_pred EEEEEeCCCc-E-EEEeCCCcEEEEe--CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEe
Q 001245 245 LSLCISSYGD-L-WSGSEGGGIKIWP--WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (1115)
Q Consensus 245 ~sVafSpdG~-L-~SgS~DgtIrvWd--l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~ 320 (1115)
+.|+++.+.+ + +.-|.+-+|..|| ..|+..+. -+..++++...... ...|++ ++.+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn--------------r~~i~dlrk~~~~e--~~~PDG----m~ID 220 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN--------------RKVIFDLRKSQPFE--SLEPDG----MTID 220 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccC--------------cceeEEeccCCCcC--CCCCCc----ceEc
Confidence 5677777766 3 5888999999999 55554321 02223343221111 111222 2334
Q ss_pred CCCCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEec
Q 001245 321 HSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVDM 360 (1115)
Q Consensus 321 ~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~ 360 (1115)
..+...+++ ..++|.-.|..||++|+.+......+++..|
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 444443333 3468999999999999988654433344444
No 406
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.94 E-value=75 Score=42.59 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--------CC----CC----CCCcceEEee-cCCCCEEEEEEeCCCc
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL--------LD----SD----DGFGEVLSWQ-AHRGPVLSLCISSYGD 254 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~--------~~----~~----~~~~~~~~l~-GH~~~V~sVafSpdG~ 254 (1115)
..|+|++...+|++.+ |+.|| .+|.+.-.. |. +. ........+. +|.++|..|++...-.
T Consensus 179 ~~V~~I~~t~nGRIF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred ceEEEEEeccCCcEEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 4688999666666555 55666 677752111 10 00 0000112334 6788999999987555
Q ss_pred -EEEEeCCCcEEEEeCCC
Q 001245 255 -LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 255 -L~SgS~DgtIrvWdl~t 271 (1115)
|++=+.-++|++|++.+
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 68999999999999976
No 407
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=50.85 E-value=2.1e+02 Score=32.79 Aligned_cols=105 Identities=22% Similarity=0.199 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEcC-CCC-eeEEeec-CCCcEEEEEecCCEEEeeecccEEEEE--eCCCcccccc
Q 001245 420 RRTEALTTSIDGMIWTGGANGLLLQWDP-NGN-RLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVL--DLEGNLLGGW 494 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~-~l~tl~g-H~~~V~sla~dG~~LaSGs~DGtIrlW--D~~G~ll~~l 494 (1115)
+.|.+++.- +|+++.|. .++|.+|++ ..+ .+..-.. ....|+++...+.+|+.|..-..|.++ +.+++.+..+
T Consensus 89 g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 89 GPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILV 166 (321)
T ss_dssp S-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEE
T ss_pred CcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEE
Confidence 456776643 55655544 478999999 555 4433222 334788888889999999876666665 5545433322
Q ss_pred cc--ccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 495 VA--HSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 495 ~g--H~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
.. ..-+++++.+ +++.++.+..+|.+.++...
T Consensus 167 a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 167 ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 22 2335666653 77789999999999999875
No 408
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=49.72 E-value=39 Score=40.80 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=57.9
Q ss_pred EEEEcCCCc-E-EEEeCCCeEEEE--cCCCCeeEEeecCCCc---EEEEEecCCEEEeeec-ccE--EEEEeCCCccc--
Q 001245 424 ALTTSIDGM-I-WTGGANGLLLQW--DPNGNRLQDFQYLPFA---VQCLCTFGSQIWVGYM-NGI--VQVLDLEGNLL-- 491 (1115)
Q Consensus 424 aVa~S~Dg~-l-aSGS~DgtIklW--D~tG~~l~tl~gH~~~---V~sla~dG~~LaSGs~-DGt--IrlWD~~G~ll-- 491 (1115)
.-+|+|||+ | .+...||...|| |+.|+.+..++. ... -.++.|||+.|+-.+. .|. |.+.|.+|...
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 356899997 4 577778876665 665544444442 222 2345589998886653 444 55667775433
Q ss_pred cccccccCCEEEEEecCCEEEeecCCCceEEeeec
Q 001245 492 GGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 492 ~~l~gH~~~V~sva~dg~~laSgS~DgtIRlWdl~ 526 (1115)
.++.+-....-.+.+||++++-.+..+.- |++.
T Consensus 321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~--~~i~ 353 (425)
T COG0823 321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQ--WDID 353 (425)
T ss_pred eeccCCCCcCccCCCCCCEEEEEeccCCc--eeeE
Confidence 33333333333455799988866643222 6654
No 409
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=46.53 E-value=5.9e+02 Score=30.52 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC--------------------------------CC---CCcceEEe
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS--------------------------------DD---GFGEVLSW 237 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~--------------------------------~~---~~~~~~~l 237 (1115)
.|.++.|+++..-||-|-..|.|.+|.....+.-+ .+ .+.+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47789999998899999999999998764221000 00 11112233
Q ss_pred ecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCccee
Q 001245 238 QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 238 ~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~ 275 (1115)
+..+++|++++.|.=|-++-|..||++-|-|+.....+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI 120 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVI 120 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEE
Confidence 45689999999998787789999999999999765433
No 410
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=46.47 E-value=5.8e+02 Score=30.45 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=35.2
Q ss_pred EcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCC-CEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcce
Q 001245 199 GDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-PVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK 274 (1115)
Q Consensus 199 ~s~dg-~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~-~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~ 274 (1115)
|.+|| ++|+.|..||.=.+|-++-.. .++.+|..+.+ ......++++++ |+=...+++++.-|++|++.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t-------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLAT-------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred cCCCCCEEEEEeccCCCcceEEEEccc-------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 45565 678888889887777544211 34566655432 223456677765 65455567788888888654
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.42 E-value=84 Score=34.37 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=46.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCC-CCCCcceEEee-------cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 199 GDEASGVVWSGHRDGRIMCWKMNARLLDS-DDGFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 199 ~s~dg~~LaSGS~DgtIrlWdl~~~~~~~-~~~~~~~~~l~-------GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
+...+.+|..-..+|.+.+||+..+++.- .....+ .+. .....|.++.++.+|. |++-| +|..-.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p--ll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP--LLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH--HhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 44567888888999999999998754310 000111 122 4567899999999998 66655 467788876
Q ss_pred C
Q 001245 270 E 270 (1115)
Q Consensus 270 ~ 270 (1115)
+
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 4
No 412
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=43.47 E-value=6.1e+02 Score=29.79 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=36.1
Q ss_pred eEEEEcC-CCCeeEEeecCCCcEEEEE--ecCC-EEEeee-cccEEEEEeCC-Cccccccc
Q 001245 441 LLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGS-QIWVGY-MNGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 441 tIklWD~-tG~~l~tl~gH~~~V~sla--~dG~-~LaSGs-~DGtIrlWD~~-G~ll~~l~ 495 (1115)
.|.++|+ +++++..+.. ...+.+|+ .|.+ +|+..+ .++++.+||.. |++++++.
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 4777788 8999998874 13566776 3443 666544 58999999976 88877665
No 413
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=43.22 E-value=4.9e+02 Score=28.67 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=78.7
Q ss_pred CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001245 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 142 ~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~ 221 (1115)
+..|+.|.+.++.++++....... .-.+ ..+|.-+.+-++-++|+.= .|+++.+.++.
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~--------------------~i~~-~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~ 64 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPT--------------------RILK-LSSITQLSVLPELNLLLVL-SDGQLYVYDLD 64 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccce--------------------eEee-cceEEEEEEecccCEEEEE-cCCccEEEEch
Confidence 556777776779999883222111 1122 3457778887775555554 36999999986
Q ss_pred CCCCCCCC-CCc-ce----EEeecCCCCEEEEE--EeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeee
Q 001245 222 ARLLDSDD-GFG-EV----LSWQAHRGPVLSLC--ISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (1115)
Q Consensus 222 ~~~~~~~~-~~~-~~----~~l~GH~~~V~sVa--fSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~ 292 (1115)
.-...... ... .. ..-......|...+ -...+. .+.....++|.+|.+........ .....+
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~-----~~~ke~---- 135 (275)
T PF00780_consen 65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS-----KLLKEI---- 135 (275)
T ss_pred hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-----ceeEEE----
Confidence 42110000 000 00 00011223344444 112232 34455566999998865311100 000000
Q ss_pred eeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEE
Q 001245 293 SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVF 348 (1115)
Q Consensus 293 ~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl 348 (1115)
.+ ...+..+++. +..+.-+..+.+.+.|+.++.....+
T Consensus 136 ---~l-------------p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 136 ---SL-------------PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELL 173 (275)
T ss_pred ---Ec-------------CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEe
Confidence 00 1334455554 33444444567889999888765555
No 414
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=43.01 E-value=9.8e+02 Score=32.94 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=15.2
Q ss_pred EEEEcCCCCEEEEEeCCCe-EEEEECC
Q 001245 196 CMVGDEASGVVWSGHRDGR-IMCWKMN 221 (1115)
Q Consensus 196 ~la~s~dg~~LaSGS~Dgt-IrlWdl~ 221 (1115)
-++||.+|-+-+. ||| ||+-|-+
T Consensus 479 GIa~dk~g~lYfa---D~t~IR~iD~~ 502 (1899)
T KOG4659|consen 479 GIAFDKMGNLYFA---DGTRIRVIDTT 502 (1899)
T ss_pred ceeEccCCcEEEe---cccEEEEeccC
Confidence 3777877766655 554 7777754
No 415
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.87 E-value=2.2e+02 Score=32.42 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=42.9
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEE
Q 001245 198 VGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1115)
Q Consensus 198 a~s~dg~~LaSGS~D-----gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvW 267 (1115)
.||+||.+|..--.| |.|-++|...+ +..+-.|.+|.=.-..|.+.+||+++... +|-|+.-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-------fqrvgE~~t~GiGpHev~lm~DGrtlvva-nGGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-------FQRVGEFSTHGIGPHEVTLMADGRTLVVA-NGGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-------cceecccccCCcCcceeEEecCCcEEEEe-CCceecc
Confidence 579999999876555 67889988742 34455677886556788999999854433 2335554
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=40.85 E-value=3.4e+02 Score=29.74 Aligned_cols=117 Identities=12% Similarity=0.149 Sum_probs=65.4
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEE------eCCCcEEEE-eCCCccee
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG------SEGGGIKIW-PWEAIEKA 275 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~Sg------S~DgtIrvW-dl~t~~~~ 275 (1115)
..|+-+....+|.+|++.+..+ ....+|. --+.|..|+++..|+ |+|= +....+|++ +|+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~------~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~- 100 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC------PLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE- 100 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC------ceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc-
Confidence 4454446677899999985332 2233442 237899999999997 6652 222378887 5654210
Q ss_pred eccCCCcceeEEEEeeeeeeeecccce-----------ecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCC
Q 001245 276 LSLKPEERHTAALIVERSYIDLRSHLS-----------VNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART 341 (1115)
Q Consensus 276 l~~~~~~~~~~a~~~~~~~~~l~~h~~-----------~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~t 341 (1115)
+...+.+ .+-||.. ...+-...+....+++..+..+.|+-+.++++.||-+..
T Consensus 101 -----~~~~v~v--------RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 101 -----ENSPVRV--------RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred -----cCCcEEE--------EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 0000000 0011110 011111123456788888877777777778899998654
No 417
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.82 E-value=12 Score=45.93 Aligned_cols=97 Identities=11% Similarity=0.277 Sum_probs=60.4
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSD 228 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~ 228 (1115)
.|..+.+||+.++..... +++-.+.+ . ...+.++.+..+-++|.+|..-..+++.|+....
T Consensus 127 nds~~~Iwdi~s~ltvPk------------e~~~fs~~--~-l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~---- 187 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPK------------ESPLFSSS--T-LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL---- 187 (783)
T ss_pred ccCCccceecccccCCCc------------cccccccc--c-ccCccccccccCcchhhcccccchhhhhhhhhhh----
Confidence 577999999998854321 11111111 1 2234456666788999999999999999987411
Q ss_pred CCCcceEEeecCCCCEEEEEEeCC-CcEEEEeCCCcEEEEeC
Q 001245 229 DGFGEVLSWQAHRGPVLSLCISSY-GDLWSGSEGGGIKIWPW 269 (1115)
Q Consensus 229 ~~~~~~~~l~GH~~~V~sVafSpd-G~L~SgS~DgtIrvWdl 269 (1115)
...-.-.+..|..+.++|. +..+..+.||.|-+||.
T Consensus 188 -----~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 188 -----DSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDT 224 (783)
T ss_pred -----hhhhhhhhhhcccceecCCCCCceeccccCceeeccc
Confidence 1111112345666778883 34444445999999993
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=40.56 E-value=68 Score=25.92 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCC---EEEEEeCCCeEEEEECCC
Q 001245 192 SSVMCMVGDEASG---VVWSGHRDGRIMCWKMNA 222 (1115)
Q Consensus 192 ~~V~~la~s~dg~---~LaSGS~DgtIrlWdl~~ 222 (1115)
++|.|+.|+|++. +||-.-.-|.|-++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998654 888888888999999874
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=38.12 E-value=75 Score=25.70 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCEEEEEEeCC-C--cEE-EEeCCCcEEEEeCCC
Q 001245 242 GPVLSLCISSY-G--DLW-SGSEGGGIKIWPWEA 271 (1115)
Q Consensus 242 ~~V~sVafSpd-G--~L~-SgS~DgtIrvWdl~t 271 (1115)
|+|.++.|||+ + +|+ -+-.-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57999999974 3 454 444558899999974
No 420
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=37.65 E-value=43 Score=41.58 Aligned_cols=32 Identities=9% Similarity=0.253 Sum_probs=24.2
Q ss_pred ceEEEEEcC----CCCEEEEEeCCCeEEEEECCCCC
Q 001245 193 SVMCMVGDE----ASGVVWSGHRDGRIMCWKMNARL 224 (1115)
Q Consensus 193 ~V~~la~s~----dg~~LaSGS~DgtIrlWdl~~~~ 224 (1115)
.+.+++++. +..+|++-+.|+++|+||+.++.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence 445566655 67899999999999999999843
No 421
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=36.52 E-value=41 Score=41.80 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=24.5
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeEEeecC
Q 001245 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYL 458 (1115)
Q Consensus 429 ~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH 458 (1115)
.+..+++-+.|+++|+||+ +++|++++.-.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 4455889999999999999 89998776443
No 422
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=4e+02 Score=31.52 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=62.6
Q ss_pred EEEEEcCCCc-EEEE-e--CCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeee-cccEEEEEeCCCccccc-
Q 001245 423 EALTTSIDGM-IWTG-G--ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLEGNLLGG- 493 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSG-S--~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~G~ll~~- 493 (1115)
..+++++++. ++.+ + .+++|-+-|. ++..+.+......+ ..++ ++|..++... .+++|.+.|.++..+..
T Consensus 119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~ 197 (381)
T COG3391 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRG 197 (381)
T ss_pred ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecc
Confidence 3467788874 5433 3 3688888888 67787776554445 4455 7899887776 78999999977543332
Q ss_pred -----cccccC-CEEEEEecCCEEEee---cCCCceEEeeec
Q 001245 494 -----WVAHSS-PVIKMAVGAGYIFTL---ANHGGIRGWNVT 526 (1115)
Q Consensus 494 -----l~gH~~-~V~sva~dg~~laSg---S~DgtIRlWdl~ 526 (1115)
..-+.. ....+.++|+++... +.|+++-.-|..
T Consensus 198 ~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 198 SVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred ccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 111222 223344677765543 223455555543
No 423
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=35.97 E-value=1.5e+02 Score=35.57 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=47.2
Q ss_pred CCceEEEEEcCCCcEEEEeCCCeEEEEcCCCC-eeEE--eec------CCCcEEEEEe-------cC---CEEEeeeccc
Q 001245 419 NRRTEALTTSIDGMIWTGGANGLLLQWDPNGN-RLQD--FQY------LPFAVQCLCT-------FG---SQIWVGYMNG 479 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~-~l~t--l~g------H~~~V~sla~-------dG---~~LaSGs~DG 479 (1115)
.+.|.+++.|.=|.+|.|++||++.|-|+.|- .+.+ +.. ....|+++.+ |+ -+|++|...|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 57899999998899999999999999999763 3333 212 2335777652 33 4788888888
Q ss_pred EEEEEeC
Q 001245 480 IVQVLDL 486 (1115)
Q Consensus 480 tIrlWD~ 486 (1115)
++.+|.+
T Consensus 166 ~v~~fkI 172 (395)
T PF08596_consen 166 NVLTFKI 172 (395)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 8888874
No 424
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=35.66 E-value=3e+02 Score=32.63 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=61.0
Q ss_pred EEEEe-CCeEEE------eCCC-CEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 137 TIVCT-EEQLWA------GGEN-GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 137 ~l~~~-~~~l~a------g~D~-tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
....+ +++++| |+|. ++++.|+++|..+.. .+.+... ..++|.++|+.++-
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--------------------~i~~~~~-~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--------------------GIENPKF-SSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--------------------EEEEEES-EEEEECTTSSEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--------------------ccccccc-ceEEEeCCCCEEEE
Confidence 34444 566655 3333 899999999865431 1111111 13899999888766
Q ss_pred EeCCC-----------eEEEEECCCCCCCCCCCCcceEEeecCCCC--EEEEEEeCCCc-E-EEEeCCCc---EEEEeCC
Q 001245 209 GHRDG-----------RIMCWKMNARLLDSDDGFGEVLSWQAHRGP--VLSLCISSYGD-L-WSGSEGGG---IKIWPWE 270 (1115)
Q Consensus 209 GS~Dg-----------tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~--V~sVafSpdG~-L-~SgS~Dgt---IrvWdl~ 270 (1115)
...|. .|+.|.+.++.- .-...+++.... ...+..|+||+ | ++.+...+ |.+-++.
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQS------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GG------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEeCcccccccCCCCcEEEEEECCCChH------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 65444 388888876321 213556665443 56888999998 3 44444444 4444554
Q ss_pred C
Q 001245 271 A 271 (1115)
Q Consensus 271 t 271 (1115)
.
T Consensus 261 ~ 261 (414)
T PF02897_consen 261 D 261 (414)
T ss_dssp C
T ss_pred c
Confidence 3
No 425
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=34.99 E-value=3.2e+02 Score=33.05 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=16.1
Q ss_pred eEEEEEcCCCc-EE-EEeCCCeEEEEcCC
Q 001245 422 TEALTTSIDGM-IW-TGGANGLLLQWDPN 448 (1115)
Q Consensus 422 V~aVa~S~Dg~-la-SGS~DgtIklWD~t 448 (1115)
+..+.+|.|.+ |+ +.=.+|.||.||++
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 45677888887 54 44459999999994
No 426
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=34.95 E-value=2.4e+02 Score=32.20 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=71.6
Q ss_pred ccccceeeEEEEEeCCeEEEeCCCCEEEEeCCCCc-ccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE
Q 001245 128 ETQIGCFLRTIVCTEEQLWAGGENGLRVWNLKELY-DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 128 ~~~~~~~l~~l~~~~~~l~ag~D~tvrvWdl~tg~-~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L 206 (1115)
+....-.+.+++.-++.|.++..+.|.+|++.... .... ...+....+.++.. -+.+|
T Consensus 84 ~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~-------------------~~~~~~~~i~sl~~--~~~~I 142 (321)
T PF03178_consen 84 STEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKK-------------------AFYDSPFYITSLSV--FKNYI 142 (321)
T ss_dssp EEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEE-------------------EEE-BSSSEEEEEE--ETTEE
T ss_pred EEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhh-------------------heecceEEEEEEec--cccEE
Confidence 44455556677777889999999999999998776 2221 11111224445544 35688
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEe-e-cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCC
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-Q-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~-GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~ 270 (1115)
+.|..-..+-++...... .....+ + -....|+++.|-++++ ++.+..+|.|.++...
T Consensus 143 ~vgD~~~sv~~~~~~~~~-------~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 143 LVGDAMKSVSLLRYDEEN-------NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEESSSSEEEEEEETTT-------E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEcccCEEEEEEEccC-------CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 888877777776443200 111112 1 1245689999986665 7889999999999875
No 427
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=33.17 E-value=1.1e+02 Score=36.99 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=52.3
Q ss_pred ccceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEEEEEeeccchH
Q 001245 945 QNQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHHEDFQTLE 1024 (1115)
Q Consensus 945 ~~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~~~~~~~~~~~ 1024 (1115)
+.....+++|.|+|.+ ...|+-...... +..+. . ........-.+...|.|.|||+..+.+..-..
T Consensus 247 e~~~~~v~~l~N~Gt~-~I~y~W~~~~~~--~~~~~----~---~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~---- 312 (426)
T PF14646_consen 247 ERVSKEVVRLENNGTT-AIYYSWRRVPFF--KNFGS----L---FRAQDQRFYFDTSSGVILPGETRNFPFMFKSR---- 312 (426)
T ss_pred ceeeEEEEEEecCCce-EEEEEEEecccc--cccch----h---ccccCCeEEEeCCCCEECCCceEEEEEEEeCC----
Confidence 3333344449999987 677776532210 00000 0 11134667788899999999999999885321
Q ss_pred hHhcCCCCCCcccCcCcc---eeEEEEEEEec
Q 001245 1025 EFVDGVPQNWWCEDTRDQ---EVVLVLKVRGR 1053 (1115)
Q Consensus 1025 ~~~~g~~~~~~~~~~~~~---~~~Lvl~v~~~ 1053 (1115)
.-||-.-.|.-.+.-- ...|.|++.|-
T Consensus 313 --~~Gif~E~W~L~t~P~l~~~~~l~v~L~G~ 342 (426)
T PF14646_consen 313 --KVGIFKERWELRTFPPLFGGASLTVRLHGV 342 (426)
T ss_pred --CceEEEEEEEEEEeccccCCCceEEEEEEE
Confidence 2233333344433222 34577777774
No 428
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=32.52 E-value=1.3e+03 Score=30.34 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=41.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCE----------------EEEEEeCCCcEEEEeC-----
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV----------------LSLCISSYGDLWSGSE----- 260 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V----------------~sVafSpdG~L~SgS~----- 260 (1115)
.++.|+.++.|+.+..-|.++|+ .+..+ ++.+.| ++--.--++.++.|+.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk--------~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~ 329 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGK--------LCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNY 329 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCC--------EEEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccc
Confidence 35688889999999999988753 23222 111111 1111111345555542
Q ss_pred -----CCcEEEEeCCCcceeecc
Q 001245 261 -----GGGIKIWPWEAIEKALSL 278 (1115)
Q Consensus 261 -----DgtIrvWdl~t~~~~l~~ 278 (1115)
+|.|+-.|.+|++....+
T Consensus 330 ~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 330 STDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred cccCCCcEEEEEECCCCcEeeEE
Confidence 689999999999876544
No 429
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.42 E-value=18 Score=42.25 Aligned_cols=18 Identities=50% Similarity=0.968 Sum_probs=15.5
Q ss_pred CcCCcceEEEeccccccc
Q 001245 758 ELSEADMVIFLGDFNYRL 775 (1115)
Q Consensus 758 ~i~~~D~vfw~GDlNyRi 775 (1115)
.+..++.||+=||||||=
T Consensus 348 ~L~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 348 DLQKSSLVIFKGDLNYRK 365 (434)
T ss_pred HHhhCcEEEEeccccHHH
Confidence 356789999999999994
No 430
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=30.19 E-value=3.6e+02 Score=31.28 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEcCCCCe---eEEe----ecCCCcEEEEEecC-----CEEEeeec
Q 001245 421 RTEALTTSIDGMIWTGGANGLLLQWDPNGNR---LQDF----QYLPFAVQCLCTFG-----SQIWVGYM 477 (1115)
Q Consensus 421 ~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~---l~tl----~gH~~~V~sla~dG-----~~LaSGs~ 477 (1115)
...++++.|||.++.+-..|.|++.+.+|.. +..+ .........|+.+. .+|+..+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 4578999999998888889999999975554 2222 12334577888433 56666655
No 431
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=30.07 E-value=2.7e+02 Score=34.62 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=43.6
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeEEeecCC-CcEE----------EEEecCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLP-FAVQ----------CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~-~~V~----------sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
+++|+.++.++.|.-.|. +|+.+=++.... ..+. .++..+.+|+.++.|+.+.-.|.+ |+.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 567777888888888888 787764443211 0111 123456778889999999999985 8876443
No 432
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=29.42 E-value=92 Score=39.18 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCC
Q 001245 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 194 V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t 271 (1115)
+.++.-.|.|+-+++|++||.|++++..... ....|.. ..|-..+.|+..| |+++..|+.+--|.-+.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~--------qski~~~-~~p~~nlv~tnhg-l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRR--------QSKICEE-AKPKENLVFTNHG-LVTATSDRRALAWKEDG 84 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccc--------hhhhhhh-cCCccceeeeccc-eEEEeccchhheeeccC
Confidence 4455656899999999999999999986521 1111211 2234456677666 67777777777786443
No 433
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=29.40 E-value=9.3e+02 Score=27.77 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=68.1
Q ss_pred eeeccccceEEeccCcEEEEecccc--cc----cCCCceEEEEEcCCCcEEEEeCCCeEEEEcC--CCCeeEE----eec
Q 001245 390 GFFQRSRNAIMGAADAVRRVAAKGG--FG----DDNRRTEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQD----FQY 457 (1115)
Q Consensus 390 ~f~~~~~~~~~Gs~d~v~~~~~~g~--l~----~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~--tG~~l~t----l~g 457 (1115)
...++++.+++++.+.+.+-...|. .. ....++.++.|++|+.|+.....|.|++=+. .++.-+. +..
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred EECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCccc
Confidence 3456677777787777665443321 22 2357899999999999988888898888772 2222111 212
Q ss_pred CCCcEEEEEe-cCCEEEeeecccEEEEEeCCCcc---ccccccccCCEEEEEe-cCCEEEeecCCCceEEe
Q 001245 458 LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLEGNL---LGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 458 H~~~V~sla~-dG~~LaSGs~DGtIrlWD~~G~l---l~~l~gH~~~V~sva~-dg~~laSgS~DgtIRlW 523 (1115)
....+..++. +...+++++.+|++.+=.-.|+- ...-..-.+..+.|.| ++..-+..+.||.+--|
T Consensus 231 ~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 NGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp --S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 2334788883 34555555566655442222432 1111122345677765 66677778888877555
No 434
>PHA02713 hypothetical protein; Provisional
Probab=28.00 E-value=3.1e+02 Score=34.36 Aligned_cols=78 Identities=9% Similarity=0.032 Sum_probs=44.4
Q ss_pred eEEEEcC-CCCe--eEEeecCCCcEEEEEecCCEEEeeecc------cEEEEEeCCC----ccccccccccCCEEEEEec
Q 001245 441 LLLQWDP-NGNR--LQDFQYLPFAVQCLCTFGSQIWVGYMN------GIVQVLDLEG----NLLGGWVAHSSPVIKMAVG 507 (1115)
Q Consensus 441 tIklWD~-tG~~--l~tl~gH~~~V~sla~dG~~LaSGs~D------GtIrlWD~~G----~ll~~l~gH~~~V~sva~d 507 (1115)
+|..||. +.+- +..+.........++.+|+.-+.|+.+ .+|..+|.+. ..+..+.......-.+..+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence 5778887 4422 222211111111223567766667654 3578898653 2455555555545555679
Q ss_pred CCEEEeecCCC
Q 001245 508 AGYIFTLANHG 518 (1115)
Q Consensus 508 g~~laSgS~Dg 518 (1115)
|+..+.||.|+
T Consensus 513 ~~iyv~Gg~~~ 523 (557)
T PHA02713 513 NTIMMLHCYES 523 (557)
T ss_pred CEEEEEeeecc
Confidence 99889999888
No 435
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=27.95 E-value=1.4e+02 Score=32.21 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=38.6
Q ss_pred cceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEEEEEe
Q 001245 946 NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHHE 1018 (1115)
Q Consensus 946 ~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~~~~~ 1018 (1115)
++...-+.|.|++.. +..|.+-. -.|.-.=|.|-.|.|.|++.++|.+.+.
T Consensus 17 ~~ske~~sv~Nnspe-pvgfKVKT---------------------TaPK~YcVRPN~g~Iep~stv~VeVilq 67 (242)
T COG5066 17 NKSKEMFSVQNNSPE-PVGFKVKT---------------------TAPKDYCVRPNMGLIEPMSTVEVEVILQ 67 (242)
T ss_pred cccceeeEeecCCCC-ceeEEeec---------------------cCCcceeEcCCCceeccCCeeEEEEEee
Confidence 445556888999876 77788652 1245667999999999999999988853
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=27.40 E-value=6.5e+02 Score=32.11 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred CeEEEEcC--CC-------CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccccc-cccCCEEEEEe
Q 001245 440 GLLLQWDP--NG-------NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV-AHSSPVIKMAV 506 (1115)
Q Consensus 440 gtIklWD~--tG-------~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~-gH~~~V~sva~ 506 (1115)
|.|+.|-. +. ....++...-....-+. .-++..++-+...++.|||.. +.+...-. ...+.|..+.+
T Consensus 1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDW 80 (631)
T PF12234_consen 1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDW 80 (631)
T ss_pred CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeecee
Q ss_pred ----cCCEEEeecCCCceEEeeecCCCCCchhhHHHhhccccccceecccceEEEEEEeCCCCCCchhhhccccCCCCCc
Q 001245 507 ----GAGYIFTLANHGGIRGWNVTSPGPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSAASDV 582 (1115)
Q Consensus 507 ----dg~~laSgS~DgtIRlWdl~~p~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~~~~~~L~~wl~~~~~~~ 582 (1115)
||+.+.+.|..+.|.++. +....|+...+--..+-+.++....|.+-.=.-|+. -
T Consensus 81 tst~d~qsiLaVGf~~~v~l~~----------------Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-----~ 139 (631)
T PF12234_consen 81 TSTPDGQSILAVGFPHHVLLYT----------------QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLK-----D 139 (631)
T ss_pred eecCCCCEEEEEEcCcEEEEEE----------------ccchhhhcCCcccceeEEEEeecCCCCCccceeEec-----C
Q ss_pred eeEEEE
Q 001245 583 GIVVVG 588 (1115)
Q Consensus 583 Di~viG 588 (1115)
...|||
T Consensus 140 G~LvV~ 145 (631)
T PF12234_consen 140 GTLVVG 145 (631)
T ss_pred CeEEEE
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.20 E-value=5.2e+02 Score=31.36 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=64.5
Q ss_pred eCCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 141 TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 141 ~~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
++.||+|-.-+.+-=|-++... |+--..|.- .. .+++.++.||+|++.||.-=.|.+|-+.+.
T Consensus 33 aNkqlfavrSggatgvvvkgpn---------------dDVpiSfdm-~d-~G~I~SIkFSlDnkilAVQR~~~~v~f~nf 95 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPN---------------DDVPISFDM-DD-KGEIKSIKFSLDNKILAVQRTSKTVDFCNF 95 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCC---------------CCCCceeee-cC-CCceeEEEeccCcceEEEEecCceEEEEec
Confidence 3778888555555566544221 111112221 22 569999999999999999999999999998
Q ss_pred CCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCC
Q 001245 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~ 270 (1115)
-+.+. .....++.+..+..|..-+++..-++|--+.-| |-++...
T Consensus 96 ~~d~~----~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 96 IPDNS----QLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCch----hhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEc
Confidence 54221 111122334445668888887765554333222 5555443
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=27.05 E-value=1.9e+02 Score=33.73 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC----CCCEEEEEEeCCCcEEEEeCCCcEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH----RGPVLSLCISSYGDLWSGSEGGGIKI 266 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH----~~~V~sVafSpdG~L~SgS~DgtIrv 266 (1115)
.+.+.++++++++.+++.|..-.-.+.++-.+ .+|+.+ ...++++++.+++.++..+..|.+++
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg------------~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~ 239 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQ------------TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRF 239 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCC------------CeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEE
No 439
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.11 E-value=45 Score=38.17 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=27.6
Q ss_pred cCcceEEEEEEEe-cEEEEEEeecccccc-hhHHHHHHHHHHHHHhc
Q 001245 675 GNKGAVGLRVRVY-DRIMCFVNCHFAAHL-EAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 675 gNKGaV~ir~~i~-~t~l~FVn~HLaA~~-~~~~~Rn~d~~~I~~~l 719 (1115)
+-||+.++..... ++.+..+|.|.--.. ..-..| ++..++.+.+
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~~~-~ql~~l~~~i 218 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTDPQR-AQLLELGDQI 218 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCccHHH-HHHHHHHHHH
Confidence 5788888877765 578999999986221 112233 5555555543
No 440
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=25.75 E-value=3.3e+02 Score=35.54 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=21.7
Q ss_pred cCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
.+.+|+.++.|+.+.-.|.+ |+.+..+
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDF 286 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEe
Confidence 35689999999999999976 8877654
No 441
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=24.96 E-value=1.3e+02 Score=21.89 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=16.2
Q ss_pred cEEEEEecCCEEEeeecccEEEEE
Q 001245 461 AVQCLCTFGSQIWVGYMNGIVQVL 484 (1115)
Q Consensus 461 ~V~sla~dG~~LaSGs~DGtIrlW 484 (1115)
.|.+|+...++++++.+-+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 456666666677777777777765
No 442
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=24.22 E-value=2.1e+02 Score=26.76 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=20.7
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD 254 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~ 254 (1115)
..+|.+-.||..+ ++...+..--..-+.|++++|++
T Consensus 34 ~~~GRll~ydp~t---------~~~~vl~~~L~fpNGVals~d~~ 69 (89)
T PF03088_consen 34 RPTGRLLRYDPST---------KETTVLLDGLYFPNGVALSPDES 69 (89)
T ss_dssp ---EEEEEEETTT---------TEEEEEEEEESSEEEEEE-TTSS
T ss_pred CCCcCEEEEECCC---------CeEEEehhCCCccCeEEEcCCCC
Confidence 3456677777776 23334433334568999999998
No 443
>PRK13202 ureB urease subunit beta; Reviewed
Probab=24.01 E-value=1.6e+02 Score=28.39 Aligned_cols=71 Identities=8% Similarity=0.131 Sum_probs=40.1
Q ss_pred eeeccCcEEeccc--eeEEEEEEecCcee---eeEEEEeecCCcccccCCCCCCCCCC-CCCCCCCceEEcc-CceeeCC
Q 001245 935 TIVSTNNIIIQNQ--DTSILRVTNKCGKK---DAFYQINCEGQSTVKDDGQASDRHPR-GSFGFPRWLEVTP-ATGMIKP 1007 (1115)
Q Consensus 935 ~~~~~~~i~~~~~--~~~~l~i~N~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~WL~v~p-~~g~i~p 1007 (1115)
..+....|.+... +...|+++|+|..+ -.||.|..-.. .. .+.| ..+ -.=|.|-- .+=..+|
T Consensus 6 i~~~~~~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~---aL------~FDR~~A~--G~RLdIpaGTavRFEP 74 (104)
T PRK13202 6 IFYGSGDIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANR---AL------SFDRATAH--GYRLDIPAATAVRFEP 74 (104)
T ss_pred EecCCCCEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCc---ce------eecHhHhc--CcccccCCCCeEEECC
Confidence 3455567777754 46789999999541 34777773110 00 0001 111 12244432 2337899
Q ss_pred CCeeEEEEE
Q 001245 1008 DRTAEMSVH 1016 (1115)
Q Consensus 1008 ~~~~~i~~~ 1016 (1115)
|++.+|+|-
T Consensus 75 G~~k~V~LV 83 (104)
T PRK13202 75 GIPQIVGLV 83 (104)
T ss_pred CCeEEEEEE
Confidence 999999987
No 444
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=23.91 E-value=2e+02 Score=33.77 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=14.8
Q ss_pred ceEEccCceeeCCCCeeEEEEEEee
Q 001245 995 WLEVTPATGMIKPDRTAEMSVHHED 1019 (1115)
Q Consensus 995 WL~v~p~~g~i~p~~~~~i~~~~~~ 1019 (1115)
=|+|+|. +-|.|||+.+|++++.|
T Consensus 312 gL~vs~~-~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 312 GLSVSDN-SPIAPGETRTLTVEAQD 335 (381)
T ss_dssp -EEES---S-B-TT-EEEEEEEEE-
T ss_pred cceeCCC-CCcCCCceEEEEEEeeh
Confidence 4788885 46899999999999755
No 445
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=23.73 E-value=1.1e+03 Score=26.71 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred cceeeEEEEE-eCCeEEEe----CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 131 IGCFLRTIVC-TEEQLWAG----GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 131 ~~~~l~~l~~-~~~~l~ag----~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
..+|-|-|.. +++.|+-| +.+.||.+|+++|..... -.-...-|.|.+ ++- ++++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~----------~~l~~~~FgEGi---------t~~-~d~l 102 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS----------VPLPPRYFGEGI---------TIL-GDKL 102 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE----------EE-TTT--EEEE---------EEE-TTEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE----------EECCccccceeE---------EEE-CCEE
Confidence 4567778887 78899874 455999999999976542 001112243411 111 3455
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcce
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK 274 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~ 274 (1115)
.---.+++++-+||.++ ++.+.++. ..+.=+.|+ .||+ |+.+....+|..+|.++.+.
T Consensus 103 ~qLTWk~~~~f~yd~~t--------l~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNT--------LKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EEEESSSSEEEEEETTT--------TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred EEEEecCCeEEEEcccc--------ceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 55567899999999986 34444542 223335666 4555 76444456788889887544
No 446
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=22.56 E-value=1.1e+03 Score=27.54 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=20.3
Q ss_pred CCceEEEEEcCCCcEEEEeCCCeEEEEcCCC
Q 001245 419 NRRTEALTTSIDGMIWTGGANGLLLQWDPNG 449 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~laSGS~DgtIklWD~tG 449 (1115)
......+++.++| |+.++.+...++.|.+|
T Consensus 71 l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~g 100 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYVATPPDILFLRDKDG 100 (367)
T ss_pred CCCccceeEecCC-EEEeCCCeEEEEeCCCC
Confidence 3455778888999 76666666555667643
No 447
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=22.51 E-value=4.7e+02 Score=31.72 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCeEEEEcC-CCCeeEEeecCCC--cEEEEE----ecCCEEEeee-cccEEEEEeC-C-Cc-------------------
Q 001245 439 NGLLLQWDP-NGNRLQDFQYLPF--AVQCLC----TFGSQIWVGY-MNGIVQVLDL-E-GN------------------- 489 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~gH~~--~V~sla----~dG~~LaSGs-~DGtIrlWD~-~-G~------------------- 489 (1115)
-.++.+||. +.+.+|++.-... ....|. |+..+=.+|+ ..++|.+|=. + |+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999 7889999876543 345555 3344444443 3445555532 1 21
Q ss_pred --cccccccccCCEEEEE--ecCCEEE-eecCCCceEEeeecCC
Q 001245 490 --LLGGWVAHSSPVIKMA--VGAGYIF-TLANHGGIRGWNVTSP 528 (1115)
Q Consensus 490 --ll~~l~gH~~~V~sva--~dg~~la-SgS~DgtIRlWdl~~p 528 (1115)
.++.+.+-..-|+.|. .|+++|+ |.=.+|.||.+|+..|
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 1222233344566654 5899887 5557999999999865
No 448
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.24 E-value=1.1e+03 Score=32.07 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~ 221 (1115)
...-.++||+.-+++|-|...|.|++.-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 345578999999999999999999998644
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.03 E-value=1.3e+03 Score=30.02 Aligned_cols=78 Identities=6% Similarity=0.057 Sum_probs=49.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEE-----EECCCCCCCCCCCCcceEEe--------ecCCCCEEEEEEeCCC---c-E
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMC-----WKMNARLLDSDDGFGEVLSW--------QAHRGPVLSLCISSYG---D-L 255 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrl-----Wdl~~~~~~~~~~~~~~~~l--------~GH~~~V~sVafSpdG---~-L 255 (1115)
.|.-|.++++|..||-.+..|-..+ |-..+ ..+++...-.+.+. ..+...|..+.|.|.+ . |
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~-~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNG-EFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccc-cccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4678999999999998888775443 32111 01011000112221 2346689999999975 2 7
Q ss_pred EEEeCCCcEEEEeCCC
Q 001245 256 WSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 256 ~SgS~DgtIrvWdl~t 271 (1115)
+-=..|+++|++|+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 7667799999999954
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.50 E-value=1.1e+03 Score=25.95 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=24.1
Q ss_pred eeeEEEEEeCCeEEEe----CCCCEEEEeCCCCcccc
Q 001245 133 CFLRTIVCTEEQLWAG----GENGLRVWNLKELYDES 165 (1115)
Q Consensus 133 ~~l~~l~~~~~~l~ag----~D~tvrvWdl~tg~~~~ 165 (1115)
+|-|-|...++.++-+ ...-||+||+.+|+...
T Consensus 46 sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~ 82 (262)
T COG3823 46 SFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIF 82 (262)
T ss_pred hhhcceeeeCCEEEEeccccccceeEEEeccCceEEE
Confidence 4555666677766653 46689999999998765
No 451
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=21.43 E-value=1.4e+02 Score=38.50 Aligned_cols=86 Identities=20% Similarity=0.348 Sum_probs=42.8
Q ss_pred CeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC-ccccccccccCCEEEEEe--cCCEEEee
Q 001245 440 GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG-NLLGGWVAHSSPVIKMAV--GAGYIFTL 514 (1115)
Q Consensus 440 gtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G-~ll~~l~gH~~~V~sva~--dg~~laSg 514 (1115)
|.|.|+--+|++-+..+. .-.++++| |.--.||+|-.-|.+-+|.... +....-.-|..+|.-+.+ +|..+.|+
T Consensus 41 GSVtIfadtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~ 119 (1416)
T KOG3617|consen 41 GSVTIFADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTL 119 (1416)
T ss_pred ceEEEEecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEc
Confidence 445555445553322211 11233444 3344556666666666666542 222222345666665553 56666666
Q ss_pred cCCCceEEeeec
Q 001245 515 ANHGGIRGWNVT 526 (1115)
Q Consensus 515 S~DgtIRlWdl~ 526 (1115)
..=|.+.+|...
T Consensus 120 d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 120 DNPGSVHLWRYD 131 (1416)
T ss_pred CCCceeEEEEee
Confidence 666666666654
No 452
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.07 E-value=1.6e+02 Score=21.21 Aligned_cols=23 Identities=35% Similarity=0.735 Sum_probs=14.2
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCee
Q 001245 430 DGMIWTGGANGLLLQWDP-NGNRL 452 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~-tG~~l 452 (1115)
+|.++.++.|+.+...|. +|+.+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEE
Confidence 445666666666666666 56544
No 453
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=21.05 E-value=4.3e+02 Score=31.00 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=42.7
Q ss_pred ceEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeC
Q 001245 193 SVMCMVGDEASGVVWSGH-----------RDG-RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE 260 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS-----------~Dg-tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~ 260 (1115)
...+|+|+++|++.++-. ..+ .|.+++-..+. + .......+.......+.|+|.++| |+-++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd---G-~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD---G-KYDKSNVFAEELSMVTGLAVAVGG-VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC---C-CcceeEEeecCCCCccceeEecCC-EEEeCC
Confidence 345799999999777642 223 67666543211 1 011233443334456899999999 766666
Q ss_pred CCcEEEEeCC
Q 001245 261 GGGIKIWPWE 270 (1115)
Q Consensus 261 DgtIrvWdl~ 270 (1115)
+...++.|.+
T Consensus 90 ~~i~~~~d~~ 99 (367)
T TIGR02604 90 PDILFLRDKD 99 (367)
T ss_pred CeEEEEeCCC
Confidence 6544555654
No 454
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.64 E-value=6.4e+02 Score=28.78 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred CEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc-CCceEEEEEcCCCCEEEEEe------CCCeEEEEECCCCC
Q 001245 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGH------RDGRIMCWKMNARL 224 (1115)
Q Consensus 152 tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~la~s~dg~~LaSGS------~DgtIrlWdl~~~~ 224 (1115)
.|.+||.++.+=-.. +.| .+.|..|.|..+.++++.|. ....+-.||+.+
T Consensus 17 ~lC~yd~~~~qW~~~---------------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~-- 73 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSP---------------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN-- 73 (281)
T ss_pred EEEEEECCCCEeecC---------------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--
Q ss_pred CCCCCCCcceEEeecCC-----CCEEEEEEeCCCc--EE----EEeCCCcEEEEe
Q 001245 225 LDSDDGFGEVLSWQAHR-----GPVLSLCISSYGD--LW----SGSEGGGIKIWP 268 (1115)
Q Consensus 225 ~~~~~~~~~~~~l~GH~-----~~V~sVafSpdG~--L~----SgS~DgtIrvWd 268 (1115)
..-..+.+-. ++|+++.+..+.. ++ ++..+..|.-||
T Consensus 74 -------~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 74 -------QTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred -------CeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
No 455
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=20.29 E-value=1.4e+03 Score=26.82 Aligned_cols=71 Identities=7% Similarity=0.047 Sum_probs=45.9
Q ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEE-eecCCCCEEEEEEeCCCc-EE-EEe--CCCcEEEEe
Q 001245 195 MCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-WQAHRGPVLSLCISSYGD-LW-SGS--EGGGIKIWP 268 (1115)
Q Consensus 195 ~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~-l~GH~~~V~sVafSpdG~-L~-SgS--~DgtIrvWd 268 (1115)
..+++++++. ..++...+..|.+-|..+... ... -.|. .-..++++++++ ++ +-+ .+++|-+-|
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--------~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--------LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccce--------eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 4577777766 666666678999999765221 111 1333 456899999996 64 444 367877777
Q ss_pred CCCccee
Q 001245 269 WEAIEKA 275 (1115)
Q Consensus 269 l~t~~~~ 275 (1115)
..+...+
T Consensus 147 ~~t~~~~ 153 (381)
T COG3391 147 AATNKVT 153 (381)
T ss_pred CCCCeEE
Confidence 7665443
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.22 E-value=9.1e+02 Score=28.97 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=57.4
Q ss_pred eeeeeccccceEEeccCcEEEEeccc------ccccC-----CCceEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeEEee
Q 001245 388 SFGFFQRSRNAIMGAADAVRRVAAKG------GFGDD-----NRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQ 456 (1115)
Q Consensus 388 ~v~f~~~~~~~~~Gs~d~v~~~~~~g------~l~~h-----~~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~tl~ 456 (1115)
.+.+.+++...+.+..+++..-...+ .|... ...+..+.+.+|+.++.++.+|.|....-.|+-=+...
T Consensus 285 ~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 285 NMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDK 364 (398)
T ss_pred eeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEcc
Confidence 33444555555555555544333233 22211 12377788999999988889998887765665322222
Q ss_pred ---cCCCcEEEEEe-cCCEEEeeecccEEEEE
Q 001245 457 ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVL 484 (1115)
Q Consensus 457 ---gH~~~V~sla~-dG~~LaSGs~DGtIrlW 484 (1115)
.-....+.|.+ +....+..+.+|.|--|
T Consensus 365 ~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 365 GADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 22345677773 55677777788887654
No 457
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=20.21 E-value=3.2e+02 Score=20.59 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.1
Q ss_pred CCCCEEEEEEeCCCc-E-EEEeCC--CcEEEE
Q 001245 240 HRGPVLSLCISSYGD-L-WSGSEG--GGIKIW 267 (1115)
Q Consensus 240 H~~~V~sVafSpdG~-L-~SgS~D--gtIrvW 267 (1115)
..+.-..-+|||||+ | +++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667889999998 5 466666 666665
No 458
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=20.03 E-value=2.6e+02 Score=26.77 Aligned_cols=83 Identities=12% Similarity=0.188 Sum_probs=44.9
Q ss_pred eeeccCcEEecc-ceeEEEEEEecCcee---eeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEcc-CceeeCCCC
Q 001245 935 TIVSTNNIIIQN-QDTSILRVTNKCGKK---DAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTP-ATGMIKPDR 1009 (1115)
Q Consensus 935 ~~~~~~~i~~~~-~~~~~l~i~N~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p-~~g~i~p~~ 1009 (1115)
.++..++|.+.. ..+..++++|+|..+ --||.|..-.. .. .+-| ....-.=|.|-- ..-..+||+
T Consensus 6 ~~~~~g~IelN~gr~~~~i~V~NtGDRPIQVGSHfHF~EvN~---aL------~FDR-~~a~G~RLdIpagTAVRFEPG~ 75 (106)
T COG0832 6 IILASGDIELNAGRPTVTIEVANTGDRPIQVGSHFHFFEVNR---AL------SFDR-EKAYGMRLDIPAGTAVRFEPGD 75 (106)
T ss_pred eEecCccEEEeCCCcceEEEEeecCCCceEeecceeehhhCc---ce------eech-hhhcceEecccCCceEeeCCCC
Confidence 456677777764 346778999999541 34788873111 00 0001 001112233322 223679999
Q ss_pred eeEEEEE-EeeccchHhHh
Q 001245 1010 TAEMSVH-HEDFQTLEEFV 1027 (1115)
Q Consensus 1010 ~~~i~~~-~~~~~~~~~~~ 1027 (1115)
..+|+|- +--......||
T Consensus 76 ~k~V~LV~~~G~r~v~Gf~ 94 (106)
T COG0832 76 EKEVELVPLGGKREVYGFN 94 (106)
T ss_pred ccEEEEEEccCceEEeccc
Confidence 9999987 44334444444
Done!