Query 001245
Match_columns 1115
No_of_seqs 537 out of 2604
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 2.9E-87 9.8E-92 746.6 33.1 306 546-904 2-307 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 1.7E-81 5.8E-86 702.0 28.9 292 548-901 4-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 1.4E-78 4.7E-83 693.4 31.4 329 529-919 2-336 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.2E-75 4.1E-80 670.3 31.1 305 544-905 18-327 (357)
5 2imq_X Salivary nitrophorin; f 100.0 3.4E-60 1.2E-64 530.3 21.3 276 549-900 4-282 (282)
6 1nr0_A Actin interacting prote 100.0 1.9E-36 6.4E-41 372.5 42.7 365 131-525 146-609 (611)
7 2ymu_A WD-40 repeat protein; u 100.0 7.7E-36 2.6E-40 360.4 45.5 331 133-524 222-577 (577)
8 1vyh_C Platelet-activating fac 100.0 2.6E-36 9E-41 352.9 36.8 270 187-525 105-409 (410)
9 1nr0_A Actin interacting prote 100.0 4.8E-35 1.6E-39 360.0 46.7 367 131-529 58-569 (611)
10 4gqb_B Methylosome protein 50; 100.0 1.3E-35 4.6E-40 340.0 34.5 289 131-527 29-331 (344)
11 4g56_B MGC81050 protein; prote 100.0 4.2E-35 1.4E-39 336.6 35.1 288 188-536 40-352 (357)
12 2ymu_A WD-40 repeat protein; u 100.0 7E-34 2.4E-38 343.3 46.5 363 131-525 15-414 (577)
13 1got_B GT-beta; complex (GTP-b 100.0 2E-34 7E-39 327.6 39.3 274 131-524 54-340 (340)
14 3ow8_A WD repeat-containing pr 100.0 7.8E-35 2.7E-39 329.5 35.5 271 188-525 30-319 (321)
15 1erj_A Transcriptional repress 100.0 2.1E-34 7.3E-39 334.3 37.3 294 131-528 63-390 (393)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-33 8.5E-38 319.6 34.8 283 134-530 18-338 (345)
17 2ynn_A Coatomer subunit beta'; 100.0 7.3E-33 2.5E-37 309.8 36.9 271 188-527 11-302 (304)
18 3iz6_a 40S ribosomal protein R 100.0 6.4E-34 2.2E-38 328.8 26.8 278 188-527 64-375 (380)
19 2pbi_B Guanine nucleotide-bind 100.0 1.2E-32 4.1E-37 315.6 36.9 276 188-524 62-354 (354)
20 2hes_X YDR267CP; beta-propelle 100.0 9.6E-33 3.3E-37 312.8 35.5 288 131-527 13-328 (330)
21 3frx_A Guanine nucleotide-bind 100.0 1.3E-32 4.5E-37 310.1 35.9 279 188-527 15-317 (319)
22 1vyh_C Platelet-activating fac 100.0 1.9E-32 6.4E-37 320.2 38.4 289 130-486 106-409 (410)
23 4ery_A WD repeat-containing pr 100.0 3.3E-32 1.1E-36 303.6 36.5 273 131-526 22-311 (312)
24 2oaj_A Protein SNI1; WD40 repe 100.0 8.7E-32 3E-36 346.0 39.3 356 132-525 58-659 (902)
25 2pm9_A Protein WEB1, protein t 100.0 3.8E-32 1.3E-36 313.0 31.2 313 148-527 42-414 (416)
26 2xzm_R RACK1; ribosome, transl 100.0 2.2E-31 7.4E-36 302.7 37.0 285 188-527 19-340 (343)
27 3ow8_A WD repeat-containing pr 100.0 5.5E-31 1.9E-35 297.9 35.2 257 144-486 50-319 (321)
28 4h5i_A Guanine nucleotide-exch 100.0 1.2E-31 4.2E-36 308.9 29.0 284 192-527 15-343 (365)
29 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-30 4.2E-35 344.5 42.7 370 131-529 614-1160(1249)
30 1r5m_A SIR4-interacting protei 100.0 4.7E-31 1.6E-35 302.8 32.7 330 133-526 46-424 (425)
31 2pm7_B Protein transport prote 100.0 5E-31 1.7E-35 293.9 31.3 254 188-529 7-287 (297)
32 4gqb_B Methylosome protein 50; 100.0 3E-31 1E-35 303.9 30.2 244 191-527 30-289 (344)
33 3vl1_A 26S proteasome regulato 100.0 3E-30 1E-34 298.4 38.8 319 142-528 68-420 (420)
34 4aow_A Guanine nucleotide-bind 100.0 3.4E-30 1.2E-34 287.9 37.8 278 188-528 36-338 (340)
35 1pgu_A Actin interacting prote 100.0 3.4E-30 1.2E-34 311.9 40.5 335 133-527 161-614 (615)
36 1got_B GT-beta; complex (GTP-b 100.0 1.8E-30 6.1E-35 295.1 34.1 240 188-528 53-302 (340)
37 1p22_A F-BOX/WD-repeat protein 100.0 2E-30 6.8E-35 304.2 33.8 270 133-529 134-416 (435)
38 2oaj_A Protein SNI1; WD40 repe 100.0 3.1E-30 1.1E-34 331.6 37.4 342 133-528 18-606 (902)
39 4ggc_A P55CDC, cell division c 100.0 6.6E-30 2.3E-34 282.8 33.6 274 138-530 31-318 (318)
40 2pbi_B Guanine nucleotide-bind 100.0 1.7E-29 5.7E-34 289.5 37.5 273 131-485 63-354 (354)
41 2j04_B YDR362CP, TAU91; beta p 100.0 3.5E-31 1.2E-35 320.6 24.8 309 144-526 174-516 (524)
42 3bg1_A Protein SEC13 homolog; 100.0 9.2E-31 3.1E-35 294.7 26.5 256 188-527 11-293 (316)
43 2ynn_A Coatomer subunit beta'; 100.0 1.6E-29 5.4E-34 282.7 35.2 271 131-487 12-301 (304)
44 3k26_A Polycomb protein EED; W 100.0 1.4E-30 4.8E-35 293.2 26.4 307 131-526 17-365 (366)
45 4gga_A P55CDC, cell division c 100.0 8.3E-30 2.8E-34 297.8 33.7 271 142-531 116-399 (420)
46 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-28 4.2E-33 289.2 42.0 297 135-527 122-442 (445)
47 3dm0_A Maltose-binding peripla 100.0 2.2E-29 7.5E-34 313.7 37.2 278 131-526 381-692 (694)
48 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.7E-30 2.3E-34 291.2 29.8 242 191-528 15-284 (345)
49 2hes_X YDR267CP; beta-propelle 100.0 1.7E-29 5.7E-34 286.2 32.3 242 188-527 12-280 (330)
50 4g56_B MGC81050 protein; prote 100.0 1.7E-29 5.9E-34 289.9 32.2 277 131-487 41-342 (357)
51 1gxr_A ESG1, transducin-like e 100.0 1.7E-28 5.9E-33 272.9 39.0 277 131-526 50-336 (337)
52 1erj_A Transcriptional repress 100.0 2.2E-29 7.7E-34 292.1 32.7 235 188-529 62-343 (393)
53 3zwl_B Eukaryotic translation 100.0 8.2E-29 2.8E-33 278.6 36.3 282 187-527 29-346 (369)
54 3i2n_A WD repeat-containing pr 100.0 1.5E-29 5.2E-34 284.2 29.7 279 131-528 17-354 (357)
55 4ery_A WD repeat-containing pr 100.0 4.6E-29 1.6E-33 278.1 32.4 236 188-528 21-269 (312)
56 1k8k_C P40, ARP2/3 complex 41 100.0 8E-29 2.7E-33 280.4 33.9 274 188-527 6-361 (372)
57 3v7d_B Cell division control p 100.0 4.8E-28 1.6E-32 284.8 41.7 315 135-523 125-459 (464)
58 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-28 5.8E-33 270.4 35.4 268 188-528 16-297 (313)
59 3ei3_B DNA damage-binding prot 100.0 8.5E-29 2.9E-33 283.8 33.5 268 132-527 73-382 (383)
60 1sq9_A Antiviral protein SKI8; 100.0 9.8E-29 3.4E-33 283.1 33.9 298 131-527 15-395 (397)
61 3dwl_C Actin-related protein 2 100.0 5.2E-30 1.8E-34 292.4 23.0 272 188-525 9-377 (377)
62 2xzm_R RACK1; ribosome, transl 100.0 2.6E-28 8.7E-33 277.4 36.6 275 132-487 21-339 (343)
63 3iz6_a 40S ribosomal protein R 100.0 1.8E-29 6.2E-34 291.5 27.1 282 131-488 65-375 (380)
64 1r5m_A SIR4-interacting protei 100.0 3.8E-28 1.3E-32 278.6 36.0 290 188-527 43-361 (425)
65 3v7d_B Cell division control p 100.0 4.9E-28 1.7E-32 284.7 36.5 291 191-531 121-425 (464)
66 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-28 4.2E-33 273.2 29.2 300 188-530 9-340 (351)
67 3sfz_A APAF-1, apoptotic pepti 100.0 3.2E-28 1.1E-32 321.4 38.1 262 188-487 613-912 (1249)
68 4aez_A CDC20, WD repeat-contai 100.0 6.3E-28 2.1E-32 279.9 35.4 269 138-530 99-383 (401)
69 3gre_A Serine/threonine-protei 100.0 1.4E-28 4.7E-33 287.2 30.0 282 188-524 61-437 (437)
70 4e54_B DNA damage-binding prot 100.0 4.3E-29 1.5E-33 293.4 25.7 276 188-530 117-433 (435)
71 1pgu_A Actin interacting prote 100.0 6.6E-28 2.3E-32 291.8 36.0 299 143-526 31-365 (615)
72 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.1E-28 3.1E-32 281.8 35.5 265 188-529 116-393 (445)
73 4a11_B DNA excision repair pro 100.0 2.9E-28 1E-32 278.5 29.2 299 148-531 20-369 (408)
74 3frx_A Guanine nucleotide-bind 100.0 1.8E-27 6E-32 268.2 34.4 272 131-487 16-316 (319)
75 1yfq_A Cell cycle arrest prote 100.0 7.5E-28 2.6E-32 269.6 28.8 267 188-525 9-322 (342)
76 3jrp_A Fusion protein of prote 100.0 1.3E-27 4.3E-32 270.4 29.7 239 188-527 9-287 (379)
77 3vl1_A 26S proteasome regulato 100.0 4.1E-28 1.4E-32 280.5 25.7 290 193-528 58-366 (420)
78 3dw8_B Serine/threonine-protei 100.0 2.9E-27 9.9E-32 275.3 31.1 267 191-528 28-374 (447)
79 2pm9_A Protein WEB1, protein t 100.0 4.3E-28 1.5E-32 279.1 23.2 277 192-530 13-340 (416)
80 3mmy_A MRNA export factor; mRN 100.0 3.5E-27 1.2E-31 265.2 30.1 270 188-527 37-346 (368)
81 3dm0_A Maltose-binding peripla 100.0 3.9E-27 1.3E-31 293.4 32.9 242 188-528 380-633 (694)
82 4h5i_A Guanine nucleotide-exch 100.0 7.4E-28 2.5E-32 277.4 24.4 283 130-487 12-342 (365)
83 1gxr_A ESG1, transducin-like e 100.0 2.2E-26 7.4E-31 255.9 34.3 239 188-528 49-297 (337)
84 2pm7_B Protein transport prote 100.0 1.6E-26 5.6E-31 257.4 32.3 241 131-487 8-284 (297)
85 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-26 5.3E-31 271.1 31.9 229 191-527 133-365 (435)
86 3bg1_A Protein SEC13 homolog; 100.0 3E-27 1E-31 265.9 24.4 243 131-487 12-292 (316)
87 4aow_A Guanine nucleotide-bind 100.0 1.2E-25 4E-30 251.1 36.3 276 131-489 37-339 (340)
88 2aq5_A Coronin-1A; WD40 repeat 99.9 4.3E-26 1.5E-30 264.0 32.1 268 148-527 54-342 (402)
89 2j04_B YDR362CP, TAU91; beta p 99.9 1.6E-27 5.5E-32 288.5 20.7 237 200-526 170-427 (524)
90 3ei3_B DNA damage-binding prot 99.9 4.2E-26 1.4E-30 261.3 31.3 236 188-528 71-340 (383)
91 1sq9_A Antiviral protein SKI8; 99.9 1.9E-26 6.5E-31 264.1 28.4 262 188-528 14-323 (397)
92 4gq1_A NUP37; propeller, trans 99.9 2.4E-27 8.3E-32 275.4 20.9 258 194-526 92-388 (393)
93 3mkq_A Coatomer beta'-subunit; 99.9 1.4E-25 4.7E-30 282.2 36.6 274 188-529 11-304 (814)
94 3mkq_A Coatomer beta'-subunit; 99.9 2.1E-25 7.3E-30 280.4 36.8 307 131-526 12-385 (814)
95 3dw8_B Serine/threonine-protei 99.9 4.9E-26 1.7E-30 264.9 28.3 305 131-525 27-444 (447)
96 3odt_A Protein DOA1; ubiquitin 99.9 6.6E-25 2.3E-29 241.7 35.9 269 132-492 18-301 (313)
97 3zwl_B Eukaryotic translation 99.9 1.2E-24 4.1E-29 244.6 36.4 281 131-487 31-345 (369)
98 3gre_A Serine/threonine-protei 99.9 2.6E-25 8.9E-30 259.4 31.7 290 132-485 63-437 (437)
99 3k26_A Polycomb protein EED; W 99.9 5.1E-26 1.7E-30 255.9 24.8 239 188-528 16-319 (366)
100 3jro_A Fusion protein of prote 99.9 4.4E-26 1.5E-30 287.4 25.4 241 188-529 7-287 (753)
101 3i2n_A WD repeat-containing pr 99.9 2.2E-25 7.5E-30 250.3 28.2 242 188-530 16-294 (357)
102 1k8k_C P40, ARP2/3 complex 41 99.9 3.5E-25 1.2E-29 250.4 29.4 271 135-487 11-360 (372)
103 2w18_A PALB2, fancn, partner a 99.9 6.2E-26 2.1E-30 257.3 23.0 163 312-525 179-355 (356)
104 2j04_A TAU60, YPL007P, hypothe 99.9 7.8E-26 2.7E-30 271.1 24.6 254 191-526 15-296 (588)
105 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2E-24 6.7E-29 254.6 34.3 236 191-527 102-391 (450)
106 4a11_B DNA excision repair pro 99.9 4E-24 1.4E-28 244.1 35.2 334 131-526 42-404 (408)
107 3f3f_A Nucleoporin SEH1; struc 99.9 3.1E-24 1E-28 237.7 32.0 304 131-497 10-350 (351)
108 4e54_B DNA damage-binding prot 99.9 1.3E-25 4.3E-30 263.8 21.1 271 131-490 118-433 (435)
109 3dwl_C Actin-related protein 2 99.9 6.2E-25 2.1E-29 250.4 26.1 282 138-486 17-377 (377)
110 3vu4_A KMHSV2; beta-propeller 99.9 1.3E-24 4.4E-29 249.0 28.3 264 188-530 17-339 (355)
111 2xyi_A Probable histone-bindin 99.9 1.7E-24 5.8E-29 254.1 28.0 249 188-526 126-409 (430)
112 4gq1_A NUP37; propeller, trans 99.9 6.3E-25 2.1E-29 255.1 21.5 261 148-487 108-388 (393)
113 2aq5_A Coronin-1A; WD40 repeat 99.9 3.9E-24 1.3E-28 247.5 28.0 245 195-530 38-302 (402)
114 4gga_A P55CDC, cell division c 99.9 3.2E-23 1.1E-27 242.0 34.1 247 133-501 148-409 (420)
115 3mmy_A MRNA export factor; mRN 99.9 2.3E-23 7.8E-28 234.0 31.3 266 130-485 37-343 (368)
116 1yfq_A Cell cycle arrest prote 99.9 2E-23 6.7E-28 233.6 29.6 264 133-485 12-321 (342)
117 3jrp_A Fusion protein of prote 99.9 1.1E-23 3.8E-28 238.0 27.5 241 131-487 10-286 (379)
118 1l0q_A Surface layer protein; 99.9 2E-22 6.9E-27 230.8 36.9 288 148-528 9-343 (391)
119 2j04_A TAU60, YPL007P, hypothe 99.9 5.8E-25 2E-29 263.6 16.2 245 191-515 85-349 (588)
120 3lrv_A PRE-mRNA-splicing facto 99.9 4.6E-24 1.6E-28 242.1 22.8 253 148-525 55-331 (343)
121 3lrv_A PRE-mRNA-splicing facto 99.9 5.4E-24 1.8E-28 241.5 23.0 231 199-527 44-292 (343)
122 4aez_A CDC20, WD repeat-contai 99.9 6.1E-23 2.1E-27 237.9 31.9 237 132-494 134-387 (401)
123 3bws_A Protein LP49; two-domai 99.9 1.8E-22 6.1E-27 234.5 32.7 262 142-526 133-431 (433)
124 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.1E-23 1.7E-27 242.5 28.1 238 192-525 5-337 (450)
125 4ggc_A P55CDC, cell division c 99.9 6.7E-22 2.3E-26 218.5 33.0 235 131-487 66-314 (318)
126 3vu4_A KMHSV2; beta-propeller 99.9 4.7E-22 1.6E-26 227.7 26.8 229 233-528 11-272 (355)
127 2w18_A PALB2, fancn, partner a 99.9 1.4E-22 4.7E-27 229.9 21.4 207 191-486 111-355 (356)
128 2xyi_A Probable histone-bindin 99.9 1E-21 3.5E-26 230.4 28.2 241 144-488 142-410 (430)
129 1l0q_A Surface layer protein; 99.9 1.4E-20 4.7E-25 215.5 33.1 251 204-527 3-275 (391)
130 3jro_A Fusion protein of prote 99.9 4.3E-22 1.5E-26 251.0 22.3 239 133-487 10-284 (753)
131 1nir_A Nitrite reductase; hemo 99.9 8.5E-20 2.9E-24 221.9 34.2 305 142-527 148-514 (543)
132 3bws_A Protein LP49; two-domai 99.9 5.7E-20 1.9E-24 213.4 26.2 229 192-527 123-390 (433)
133 2hqs_A Protein TOLB; TOLB, PAL 99.8 8.7E-20 3E-24 213.9 27.3 234 203-509 143-408 (415)
134 3qbt_B Inositol polyphosphate 99.8 1.1E-20 3.7E-25 188.5 12.0 128 905-1067 2-135 (140)
135 1k32_A Tricorn protease; prote 99.8 2.6E-18 8.8E-23 224.1 35.4 358 134-527 16-461 (1045)
136 3qis_A Inositol polyphosphate 99.8 3E-20 1E-24 214.2 13.6 156 901-1091 1-167 (366)
137 1nir_A Nitrite reductase; hemo 99.8 6.4E-19 2.2E-23 214.1 25.9 272 198-529 144-460 (543)
138 2ecf_A Dipeptidyl peptidase IV 99.8 2.2E-17 7.4E-22 206.1 27.7 293 191-527 36-413 (741)
139 2hqs_A Protein TOLB; TOLB, PAL 99.8 2.8E-17 9.6E-22 192.5 26.9 264 194-526 65-386 (415)
140 1k32_A Tricorn protease; prote 99.8 1.3E-16 4.6E-21 207.9 32.0 339 134-526 54-501 (1045)
141 2ojh_A Uncharacterized protein 99.7 1.2E-16 4E-21 173.0 23.9 242 148-518 19-293 (297)
142 1ri6_A Putative isomerase YBHE 99.7 3.3E-16 1.1E-20 174.4 26.6 263 148-526 12-307 (343)
143 3u4y_A Uncharacterized protein 99.7 6.8E-16 2.3E-20 172.3 28.4 258 199-527 5-304 (331)
144 1xfd_A DIP, dipeptidyl aminope 99.7 8.1E-17 2.8E-21 200.1 23.1 316 148-529 34-395 (723)
145 1pby_B Quinohemoprotein amine 99.7 4.6E-16 1.6E-20 172.7 25.5 278 148-497 8-320 (337)
146 3o4h_A Acylamino-acid-releasin 99.7 2.5E-16 8.7E-21 191.5 24.3 256 191-525 21-313 (582)
147 2z3z_A Dipeptidyl aminopeptida 99.7 1E-15 3.5E-20 190.1 29.4 275 192-527 82-435 (706)
148 2ecf_A Dipeptidyl peptidase IV 99.7 5.3E-16 1.8E-20 193.6 27.0 279 193-526 110-458 (741)
149 3vgz_A Uncharacterized protein 99.7 6.6E-15 2.3E-19 165.0 31.8 266 131-518 39-335 (353)
150 3u4y_A Uncharacterized protein 99.7 7.3E-15 2.5E-19 163.9 27.5 265 142-492 9-308 (331)
151 3hfq_A Uncharacterized protein 99.7 7.1E-15 2.4E-19 165.8 27.7 247 191-526 39-316 (347)
152 1jmx_B Amine dehydrogenase; ox 99.7 1.3E-14 4.3E-19 162.2 26.9 282 142-496 10-334 (349)
153 3vgz_A Uncharacterized protein 99.7 2E-14 6.7E-19 161.2 28.6 240 192-527 41-303 (353)
154 1pby_B Quinohemoprotein amine 99.7 1.2E-14 4.2E-19 161.2 26.1 255 204-527 2-310 (337)
155 1xfd_A DIP, dipeptidyl aminope 99.6 1E-15 3.5E-20 190.2 16.6 279 193-524 18-341 (723)
156 2ojh_A Uncharacterized protein 99.6 1E-14 3.6E-19 157.6 22.0 213 208-527 17-258 (297)
157 1z68_A Fibroblast activation p 99.6 6.4E-15 2.2E-19 183.4 22.7 314 144-528 28-444 (719)
158 2z3z_A Dipeptidyl aminopeptida 99.6 3.8E-14 1.3E-18 176.0 29.1 306 135-527 84-476 (706)
159 1z68_A Fibroblast activation p 99.6 2.3E-15 7.7E-20 187.5 16.7 290 196-527 20-391 (719)
160 2oit_A Nucleoporin 214KDA; NH2 99.6 1.8E-14 6.2E-19 170.0 22.6 209 193-487 38-277 (434)
161 1jmx_B Amine dehydrogenase; ox 99.6 3.8E-14 1.3E-18 158.3 23.1 263 197-527 5-325 (349)
162 3pe7_A Oligogalacturonate lyas 99.6 1.9E-13 6.5E-18 155.9 27.5 266 197-528 41-383 (388)
163 2oit_A Nucleoporin 214KDA; NH2 99.6 9E-15 3.1E-19 172.6 16.6 229 213-527 23-278 (434)
164 1q7f_A NHL, brain tumor CG1071 99.6 1.2E-12 4E-17 143.6 31.8 236 191-531 29-284 (286)
165 3scy_A Hypothetical bacterial 99.6 5.4E-13 1.9E-17 151.4 29.7 254 191-526 49-336 (361)
166 3hfq_A Uncharacterized protein 99.5 9.6E-13 3.3E-17 148.3 27.9 237 142-486 50-315 (347)
167 1ri6_A Putative isomerase YBHE 99.5 4.4E-13 1.5E-17 149.0 24.4 220 204-526 6-261 (343)
168 3fvz_A Peptidyl-glycine alpha- 99.5 4.2E-12 1.4E-16 143.4 28.5 251 191-527 23-322 (329)
169 1jof_A Carboxy-CIS,CIS-muconat 99.5 1.3E-12 4.5E-17 149.4 21.8 238 192-527 40-341 (365)
170 3o4h_A Acylamino-acid-releasin 99.5 1.7E-13 5.8E-18 166.6 14.7 102 423-525 153-274 (582)
171 4a5s_A Dipeptidyl peptidase 4 99.4 1.8E-12 6.1E-17 162.8 20.0 292 193-527 18-398 (740)
172 1jof_A Carboxy-CIS,CIS-muconat 99.4 9.4E-12 3.2E-16 142.3 23.1 238 144-489 53-342 (365)
173 3scy_A Hypothetical bacterial 99.4 1E-10 3.4E-15 132.6 31.4 227 192-506 100-359 (361)
174 4a5s_A Dipeptidyl peptidase 4 99.4 3.4E-11 1.2E-15 151.2 30.1 108 142-274 27-144 (740)
175 3fvz_A Peptidyl-glycine alpha- 99.4 2.8E-11 9.5E-16 136.6 26.3 227 152-489 70-323 (329)
176 3azo_A Aminopeptidase; POP fam 99.4 1.5E-11 5.1E-16 151.4 25.2 280 131-526 22-366 (662)
177 2oiz_A Aromatic amine dehydrog 99.4 1E-10 3.5E-15 134.3 26.7 268 149-506 29-355 (361)
178 3c5m_A Oligogalacturonate lyas 99.4 4.2E-11 1.4E-15 136.2 23.2 289 194-527 38-382 (396)
179 3e5z_A Putative gluconolactona 99.4 9.2E-11 3.1E-15 129.4 25.2 227 191-526 27-283 (296)
180 4gz1_A Tyrosyl-DNA phosphodies 99.3 2.3E-11 7.9E-16 130.6 18.5 131 553-719 9-144 (256)
181 1q7f_A NHL, brain tumor CG1071 99.3 5.4E-10 1.8E-14 122.3 29.6 232 137-487 34-279 (286)
182 2gop_A Trilobed protease; beta 99.3 3.2E-10 1.1E-14 127.2 27.4 95 428-526 223-330 (347)
183 2oiz_A Aromatic amine dehydrog 99.3 1E-10 3.5E-15 134.3 23.1 258 211-527 29-334 (361)
184 2dg1_A DRP35, lactonase; beta 99.3 2.2E-10 7.5E-15 128.1 22.3 254 192-517 6-300 (333)
185 4fva_A 5'-tyrosyl-DNA phosphod 99.2 1.5E-10 5.2E-15 124.3 16.1 134 550-719 10-148 (256)
186 4f1h_A Tyrosyl-DNA phosphodies 99.2 4.4E-10 1.5E-14 118.9 18.7 45 675-719 94-138 (250)
187 2dg1_A DRP35, lactonase; beta 99.2 1E-08 3.6E-13 114.4 30.9 220 191-479 44-301 (333)
188 2gop_A Trilobed protease; beta 99.2 1.9E-09 6.4E-14 120.9 24.4 99 422-526 173-290 (347)
189 3azo_A Aminopeptidase; POP fam 99.2 7.7E-10 2.6E-14 136.1 22.2 235 191-527 23-323 (662)
190 3pe7_A Oligogalacturonate lyas 99.2 1.3E-09 4.6E-14 123.9 22.1 258 232-527 21-329 (388)
191 2bkl_A Prolyl endopeptidase; m 99.1 1.1E-09 3.9E-14 136.3 21.2 231 192-528 121-398 (695)
192 3dsm_A Uncharacterized protein 99.1 9.7E-09 3.3E-13 115.9 26.8 257 149-526 15-301 (328)
193 2z2n_A Virginiamycin B lyase; 99.1 2.2E-07 7.4E-12 101.0 36.1 266 191-526 14-294 (299)
194 2bkl_A Prolyl endopeptidase; m 99.1 2.4E-09 8.1E-14 133.4 23.1 245 134-498 122-407 (695)
195 3teb_A Endonuclease/exonucleas 99.1 1.1E-09 3.8E-14 118.9 17.6 46 674-719 120-165 (266)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.9E-08 6.4E-13 110.9 27.5 236 191-529 17-301 (314)
197 3no2_A Uncharacterized protein 99.1 1E-08 3.4E-13 113.4 25.3 212 202-514 4-230 (276)
198 4gew_A 5'-tyrosyl-DNA phosphod 99.1 5.5E-10 1.9E-14 128.7 15.2 135 549-719 115-254 (362)
199 2xdw_A Prolyl endopeptidase; a 99.1 9.3E-09 3.2E-13 128.3 27.5 231 193-528 126-415 (710)
200 1ako_A Exonuclease III; AP-end 99.1 4.4E-10 1.5E-14 122.2 13.4 129 554-719 1-136 (268)
201 1rwi_B Serine/threonine-protei 99.1 1.4E-08 4.7E-13 109.6 25.0 231 193-528 25-265 (270)
202 3dsm_A Uncharacterized protein 99.1 1.5E-08 5.1E-13 114.4 26.2 237 131-495 42-309 (328)
203 3e5z_A Putative gluconolactona 99.1 1.8E-08 6.3E-13 110.9 25.3 214 145-489 43-287 (296)
204 2xdw_A Prolyl endopeptidase; a 99.0 5.4E-08 1.8E-12 121.4 27.4 242 134-496 126-424 (710)
205 1rwi_B Serine/threonine-protei 98.9 1.6E-07 5.4E-12 101.2 26.0 226 136-487 27-263 (270)
206 2z2n_A Virginiamycin B lyase; 98.9 2E-06 6.9E-11 93.3 35.1 264 134-487 16-294 (299)
207 1zwx_A SMCL, sphingomyelinase- 98.9 1.3E-08 4.3E-13 113.2 17.5 46 674-719 128-179 (301)
208 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2E-07 6.9E-12 106.3 28.0 315 139-524 50-375 (376)
209 3no2_A Uncharacterized protein 98.9 2.3E-07 7.8E-12 102.5 25.5 211 143-476 5-231 (276)
210 3i41_A Beta-hemolysin; beta to 98.9 2.1E-08 7.3E-13 113.1 17.1 47 673-719 146-198 (317)
211 1qks_A Cytochrome CD1 nitrite 98.9 8.8E-07 3E-11 107.9 32.1 269 148-528 174-478 (567)
212 2qc5_A Streptogramin B lactona 98.9 5E-06 1.7E-10 90.2 35.0 263 191-524 19-297 (300)
213 3c5m_A Oligogalacturonate lyas 98.9 6.3E-08 2.2E-12 109.8 20.1 238 243-527 37-329 (396)
214 1yr2_A Prolyl oligopeptidase; 98.9 1.5E-07 5.1E-12 118.1 24.9 230 193-527 164-441 (741)
215 3g6s_A Putative endonuclease/e 98.8 3.2E-08 1.1E-12 107.9 16.1 43 675-719 114-158 (267)
216 3hrp_A Uncharacterized protein 98.8 8.2E-07 2.8E-11 103.7 28.4 234 192-525 131-408 (409)
217 3hxj_A Pyrrolo-quinoline quino 98.8 7.3E-08 2.5E-12 106.9 18.5 287 141-526 29-323 (330)
218 3l1w_A Uncharacterized protein 98.8 9.9E-08 3.4E-12 103.3 16.8 134 554-719 1-152 (257)
219 3dr2_A Exported gluconolactona 98.7 9E-07 3.1E-11 98.3 24.0 69 192-270 45-115 (305)
220 1yr2_A Prolyl oligopeptidase; 98.7 5.4E-07 1.9E-11 113.0 24.1 111 134-272 164-304 (741)
221 2qe8_A Uncharacterized protein 98.7 3E-07 1E-11 104.2 19.2 264 192-521 17-315 (343)
222 3g4e_A Regucalcin; six bladed 98.7 1.9E-06 6.5E-11 95.3 25.2 210 196-508 17-250 (297)
223 3mpr_A Putative endonuclease/e 98.7 1.1E-07 3.7E-12 106.0 14.9 135 552-719 5-162 (298)
224 1qks_A Cytochrome CD1 nitrite 98.7 3.2E-06 1.1E-10 102.9 29.0 233 199-527 163-421 (567)
225 2ddr_A Sphingomyelin phosphodi 98.7 3.2E-07 1.1E-11 101.9 18.0 46 674-719 128-179 (306)
226 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 8.1E-06 2.8E-10 89.6 28.7 67 421-487 227-298 (314)
227 2jc4_A Exodeoxyribonuclease II 98.7 5.5E-08 1.9E-12 104.8 10.9 38 554-595 1-38 (256)
228 2hz6_A Endoplasmic reticulum t 98.7 1E-08 3.6E-13 118.0 5.5 190 202-503 8-207 (369)
229 1xip_A Nucleoporin NUP159; bet 98.7 3.7E-07 1.3E-11 105.9 18.4 175 192-474 38-230 (388)
230 2ghs_A AGR_C_1268P; regucalcin 98.6 4.3E-06 1.5E-10 94.1 26.0 215 196-514 53-289 (326)
231 2qc5_A Streptogramin B lactona 98.6 4.3E-05 1.5E-09 82.7 33.1 260 135-486 22-298 (300)
232 3sjl_D Methylamine dehydrogena 98.6 6.5E-06 2.2E-10 95.2 27.0 270 197-527 38-363 (386)
233 3iuj_A Prolyl endopeptidase; h 98.6 1.7E-06 5.8E-11 107.8 22.2 89 439-527 304-405 (693)
234 3g4e_A Regucalcin; six bladed 98.5 2.7E-05 9.1E-10 86.1 27.9 212 142-477 24-261 (297)
235 3q7m_A Lipoprotein YFGL, BAMB; 98.5 9.7E-06 3.3E-10 92.3 24.2 267 203-528 53-338 (376)
236 4a2l_A BT_4663, two-component 98.5 0.00012 4.2E-09 92.3 36.4 314 135-526 133-479 (795)
237 2mad_H Methylamine dehydrogena 98.5 4.7E-05 1.6E-09 87.7 29.8 70 423-493 270-356 (373)
238 3sjl_D Methylamine dehydrogena 98.5 3.6E-05 1.2E-09 89.0 27.2 96 150-275 58-173 (386)
239 2mad_H Methylamine dehydrogena 98.5 7.7E-05 2.6E-09 85.9 29.9 272 198-528 27-351 (373)
240 3hxj_A Pyrrolo-quinoline quino 98.4 9.7E-06 3.3E-10 89.6 21.2 254 136-487 63-323 (330)
241 2j63_A AP-endonuclease; base e 98.4 9.4E-07 3.2E-11 104.8 13.4 38 553-594 149-190 (467)
242 1vyb_A ORF2 contains A reverse 98.4 2.5E-06 8.6E-11 90.5 15.6 111 553-703 7-121 (238)
243 3hrp_A Uncharacterized protein 98.4 4.3E-05 1.5E-09 89.1 27.3 242 137-486 135-408 (409)
244 4a2l_A BT_4663, two-component 98.4 0.0003 1E-08 88.8 37.1 315 134-525 264-612 (795)
245 3iuj_A Prolyl endopeptidase; h 98.4 1.5E-05 5.2E-10 99.2 22.6 111 134-272 130-269 (693)
246 2jc5_A Exodeoxyribonuclease; h 98.4 9.5E-07 3.3E-11 95.2 10.2 38 554-595 2-40 (259)
247 2o3h_A DNA-(apurinic or apyrim 98.4 9.3E-07 3.2E-11 97.3 10.3 41 551-595 26-67 (285)
248 1wdu_A TRAS1 ORF2P; four-layer 98.4 2.3E-06 8E-11 92.1 13.2 119 553-717 19-142 (245)
249 2ghs_A AGR_C_1268P; regucalcin 98.4 0.00011 3.6E-09 82.6 27.3 211 143-478 61-292 (326)
250 2voa_A AF_EXO, XTHA, exodeoxyr 98.4 4.1E-06 1.4E-10 90.3 15.1 37 554-594 2-38 (257)
251 1yiq_A Quinohemoprotein alcoho 98.3 1.8E-05 6.3E-10 98.6 22.7 51 478-528 454-506 (689)
252 3v9f_A Two-component system se 98.3 0.00071 2.4E-08 85.2 37.4 323 133-526 66-435 (781)
253 1yiq_A Quinohemoprotein alcoho 98.3 4.6E-05 1.6E-09 95.0 24.9 80 439-518 454-540 (689)
254 2hz6_A Endoplasmic reticulum t 98.3 2.4E-07 8.1E-12 106.7 3.9 95 430-528 92-193 (369)
255 1kb0_A Quinohemoprotein alcoho 98.3 3.3E-05 1.1E-09 96.0 23.5 117 141-278 76-206 (677)
256 1hd7_A DNA-(apurinic or apyrim 98.3 8.9E-07 3.1E-11 99.7 8.5 39 552-594 60-99 (318)
257 3v9f_A Two-component system se 98.3 0.00098 3.3E-08 83.9 37.1 316 134-525 259-609 (781)
258 3dr2_A Exported gluconolactona 98.2 0.00013 4.6E-09 80.6 24.1 237 234-522 37-302 (305)
259 1mda_H Methylamine dehydrogena 98.2 3.7E-05 1.3E-09 88.6 18.9 90 152-271 47-158 (368)
260 2fp8_A Strictosidine synthase; 98.2 0.00034 1.2E-08 77.9 26.1 71 193-272 20-111 (322)
261 1xip_A Nucleoporin NUP159; bet 98.1 4E-05 1.4E-09 88.8 17.3 133 387-527 41-191 (388)
262 3c75_H MADH, methylamine dehyd 98.1 0.00039 1.3E-08 81.5 25.4 95 151-275 99-213 (426)
263 3c75_H MADH, methylamine dehyd 98.1 0.00056 1.9E-08 80.2 25.8 269 201-527 82-402 (426)
264 3g91_A MTH0212, exodeoxyribonu 98.1 6.7E-06 2.3E-10 89.5 8.8 38 554-595 4-42 (265)
265 1kb0_A Quinohemoprotein alcoho 97.9 0.0011 3.6E-08 82.5 25.5 72 439-511 456-534 (677)
266 2qe8_A Uncharacterized protein 97.9 0.00036 1.2E-08 78.7 19.2 64 462-525 197-276 (343)
267 1mda_H Methylamine dehydrogena 97.8 0.0015 5.2E-08 75.1 22.5 99 427-527 219-346 (368)
268 1npe_A Nidogen, entactin; glyc 97.7 0.021 7.1E-07 61.4 28.4 198 193-495 37-246 (267)
269 1kv9_A Type II quinohemoprotei 97.5 0.0022 7.5E-08 79.5 20.1 52 477-528 436-489 (668)
270 4b8c_D Glucose-repressible alc 97.4 2.2E-05 7.4E-10 98.5 -0.4 33 687-719 545-577 (727)
271 3ngq_A CCR4-NOT transcription 97.4 0.00052 1.8E-08 79.7 10.7 31 689-719 195-225 (398)
272 1kv9_A Type II quinohemoprotei 97.4 0.011 3.7E-07 73.3 23.4 78 437-515 435-520 (668)
273 1npe_A Nidogen, entactin; glyc 97.3 0.11 3.9E-06 55.5 28.3 106 422-527 124-238 (267)
274 2ad6_A Methanol dehydrogenase 97.3 0.027 9.3E-07 68.4 25.7 117 141-278 61-192 (571)
275 2a40_B Deoxyribonuclease-1; WA 97.3 0.00018 6.1E-09 78.2 5.3 26 677-702 111-139 (260)
276 3nol_A Glutamine cyclotransfer 97.2 0.021 7.3E-07 62.2 20.2 173 241-515 42-243 (262)
277 1w6s_A Methanol dehydrogenase 97.2 0.049 1.7E-06 66.5 25.7 51 477-528 451-504 (599)
278 2iwa_A Glutamine cyclotransfer 97.1 0.064 2.2E-06 58.7 23.1 185 243-527 22-237 (266)
279 2e6j_A Hydin protein; PAPD, st 97.0 0.00063 2.2E-08 64.3 5.9 68 932-1018 7-79 (112)
280 3nok_A Glutaminyl cyclase; bet 97.0 0.03 1E-06 61.2 18.8 171 241-514 54-253 (268)
281 2fp8_A Strictosidine synthase; 96.9 0.083 2.9E-06 58.4 23.0 105 421-526 186-312 (322)
282 2ys4_A Hydrocephalus-inducing 96.9 0.0035 1.2E-07 60.4 10.0 85 936-1066 31-115 (122)
283 1flg_A Protein (quinoprotein e 96.9 0.11 3.6E-06 63.3 25.0 51 477-528 464-517 (582)
284 2ei9_A Non-LTR retrotransposon 96.8 0.00068 2.3E-08 73.2 4.7 37 553-593 7-43 (240)
285 2ece_A 462AA long hypothetical 96.8 0.13 4.3E-06 60.4 23.6 124 196-350 86-246 (462)
286 3mbr_X Glutamine cyclotransfer 96.7 0.15 5.2E-06 54.9 21.7 177 239-515 16-222 (243)
287 3ott_A Two-component system se 96.6 2.4 8.1E-05 52.7 37.5 317 135-525 234-584 (758)
288 3nol_A Glutamine cyclotransfer 96.6 0.16 5.5E-06 55.2 20.9 111 196-348 47-162 (262)
289 2p4o_A Hypothetical protein; p 96.5 1.3 4.4E-05 48.4 29.5 72 192-273 32-106 (306)
290 1flg_A Protein (quinoprotein e 96.5 0.85 2.9E-05 55.3 29.3 86 438-523 464-557 (582)
291 1k3i_A Galactose oxidase precu 96.5 0.14 4.9E-06 62.9 22.5 71 196-272 190-275 (656)
292 3v65_B Low-density lipoprotein 96.5 1.3 4.4E-05 50.7 29.1 98 144-271 89-190 (386)
293 1w6s_A Methanol dehydrogenase 96.3 0.49 1.7E-05 57.7 25.7 77 438-515 451-535 (599)
294 2ad6_A Methanol dehydrogenase 96.3 0.49 1.7E-05 57.3 25.5 80 438-519 442-530 (571)
295 3nok_A Glutaminyl cyclase; bet 96.2 0.17 5.8E-06 55.2 18.5 161 131-349 53-218 (268)
296 2iwa_A Glutamine cyclotransfer 96.2 0.053 1.8E-06 59.3 14.6 106 422-527 23-135 (266)
297 3p5b_L Low density lipoprotein 96.1 2.7 9.2E-05 48.2 31.1 78 191-272 111-191 (400)
298 1fwx_A Nitrous oxide reductase 96.1 0.26 9E-06 59.5 21.3 70 420-489 331-432 (595)
299 1ijq_A LDL receptor, low-densi 96.1 2.2 7.6E-05 47.0 30.3 102 145-271 4-108 (316)
300 3sov_A LRP-6, low-density lipo 96.0 2.5 8.6E-05 46.9 28.2 102 145-272 7-111 (318)
301 3ott_A Two-component system se 96.0 4.9 0.00017 49.8 41.1 332 134-525 64-446 (758)
302 1sr4_B CDT B, cytolethal diste 95.9 0.043 1.5E-06 59.6 11.6 37 676-718 121-157 (261)
303 3v64_C Agrin; beta propeller, 95.8 3.5 0.00012 46.3 29.4 72 192-272 73-148 (349)
304 1msp_A MSP, major sperm protei 95.4 0.18 6.2E-06 48.7 13.0 63 935-1019 9-76 (126)
305 3mbr_X Glutamine cyclotransfer 95.3 0.84 2.9E-05 49.1 19.3 90 437-527 82-179 (243)
306 2xbg_A YCF48-like protein; pho 95.3 4.6 0.00016 44.7 30.9 104 419-524 204-319 (327)
307 3m0c_C LDL receptor, low-densi 95.3 7.1 0.00024 49.1 30.6 78 191-272 423-503 (791)
308 3tc9_A Hypothetical hydrolase; 95.3 4.1 0.00014 47.2 26.7 58 193-259 138-197 (430)
309 1m1s_A WR4; structural genomic 95.2 0.082 2.8E-06 50.3 9.6 62 935-1018 11-73 (116)
310 1row_A SSP-19, MSP-domain prot 95.2 0.066 2.3E-06 50.5 8.8 61 935-1017 3-64 (109)
311 2p4o_A Hypothetical protein; p 95.0 5 0.00017 43.6 25.6 109 133-272 32-148 (306)
312 2xe4_A Oligopeptidase B; hydro 94.8 0.62 2.1E-05 58.2 19.0 70 193-272 175-257 (751)
313 2xe4_A Oligopeptidase B; hydro 94.7 1.4 4.7E-05 55.1 21.8 104 423-526 274-397 (751)
314 2f1n_A CDT B, cytolethal diste 94.5 0.039 1.3E-06 59.6 6.1 39 675-719 129-167 (262)
315 1z9l_A Vesicle-associated memb 94.4 0.1 3.5E-06 50.5 8.3 62 935-1018 11-77 (128)
316 3p5b_L Low density lipoprotein 94.4 9.1 0.00031 43.7 28.6 106 422-527 204-320 (400)
317 3v65_B Low-density lipoprotein 94.4 8.8 0.0003 43.6 28.1 105 421-525 203-316 (386)
318 2cri_A Vesicle-associated memb 94.1 0.13 4.4E-06 51.1 8.5 63 935-1019 15-82 (147)
319 3v64_C Agrin; beta propeller, 93.8 10 0.00035 42.3 29.6 103 422-524 161-272 (349)
320 4hw6_A Hypothetical protein, I 93.8 13 0.00043 43.1 27.8 58 193-259 140-199 (433)
321 1wic_A Hypothetical protein ri 93.7 0.14 4.8E-06 51.2 7.9 63 935-1019 19-86 (152)
322 2xbg_A YCF48-like protein; pho 93.0 13 0.00045 40.9 24.8 65 421-486 251-320 (327)
323 3m0c_C LDL receptor, low-densi 92.7 27 0.00092 43.8 29.2 105 422-526 516-631 (791)
324 1ijq_A LDL receptor, low-densi 92.0 17 0.00057 39.9 30.3 106 422-527 122-238 (316)
325 1k3i_A Galactose oxidase precu 91.7 7.6 0.00026 47.4 21.3 79 439-517 368-476 (656)
326 1fwx_A Nitrous oxide reductase 91.6 4.8 0.00016 48.7 18.6 97 421-518 278-412 (595)
327 4a0p_A LRP6, LRP-6, low-densit 89.8 43 0.0015 40.7 31.5 98 148-272 12-112 (628)
328 2ece_A 462AA long hypothetical 89.5 7 0.00024 45.7 17.0 113 134-271 139-289 (462)
329 2qsv_A Uncharacterized protein 89.0 0.98 3.4E-05 47.7 8.7 60 936-1018 4-68 (220)
330 1n7d_A LDL receptor, low-densi 86.0 3.7 0.00013 50.8 12.7 75 420-494 540-621 (699)
331 3tc9_A Hypothetical hydrolase; 84.3 38 0.0013 38.9 19.6 68 421-488 227-301 (430)
332 3ei3_A DNA damage-binding prot 83.7 1.2E+02 0.0041 39.7 34.4 86 440-527 807-913 (1158)
333 2p9w_A MAL S 1 allergenic prot 83.6 31 0.0011 38.6 17.4 66 422-487 139-214 (334)
334 3amr_A 3-phytase; beta-propell 83.5 64 0.0022 36.4 24.1 60 200-270 37-107 (355)
335 3sov_A LRP-6, low-density lipo 82.0 64 0.0022 35.3 25.6 105 423-527 125-238 (318)
336 4hw6_A Hypothetical protein, I 81.1 43 0.0015 38.6 18.3 67 421-487 229-303 (433)
337 4a0p_A LRP6, LRP-6, low-densit 79.9 1.1E+02 0.0039 36.9 39.6 295 192-526 123-462 (628)
338 3amr_A 3-phytase; beta-propell 79.8 85 0.0029 35.3 20.8 107 420-526 128-262 (355)
339 3kya_A Putative phosphatase; s 79.1 1.1E+02 0.0037 36.1 26.8 61 193-262 140-214 (496)
340 1n7d_A LDL receptor, low-densi 78.0 2.6 8.8E-05 52.3 6.9 76 193-272 407-485 (699)
341 3a9g_A Putative uncharacterize 77.0 15 0.00053 41.1 12.5 69 420-488 29-114 (354)
342 2p9w_A MAL S 1 allergenic prot 76.5 1E+02 0.0035 34.4 21.6 68 196-270 17-108 (334)
343 2qsv_A Uncharacterized protein 75.5 7.8 0.00027 40.7 8.9 64 932-1018 117-184 (220)
344 2ism_A Putative oxidoreductase 65.1 52 0.0018 36.6 13.3 68 420-488 31-114 (352)
345 3sre_A PON1, serum paraoxonase 64.1 1.9E+02 0.0064 32.4 17.8 67 420-487 221-297 (355)
346 3s94_A LRP-6, low-density lipo 62.0 2.7E+02 0.0092 33.5 35.6 312 137-507 88-443 (619)
347 3s94_A LRP-6, low-density lipo 56.9 3.2E+02 0.011 32.8 28.8 73 192-272 349-424 (619)
348 3pbp_A Nucleoporin NUP82; beta 54.3 1.2E+02 0.0042 35.1 13.7 67 421-487 67-157 (452)
349 3sre_A PON1, serum paraoxonase 54.1 43 0.0015 37.8 10.0 72 191-271 164-252 (355)
350 3qqz_A Putative uncharacterize 53.2 2.3E+02 0.0079 30.1 24.2 112 134-270 28-150 (255)
351 2ism_A Putative oxidoreductase 52.1 2.7E+02 0.0093 30.6 27.0 26 243-268 32-57 (352)
352 1tl2_A L10, protein (tachylect 45.9 46 0.0016 35.2 7.8 66 193-270 42-115 (236)
353 4gq2_M Nucleoporin NUP120; bet 43.2 68 0.0023 41.0 10.5 35 191-225 235-269 (950)
354 3kya_A Putative phosphatase; s 41.0 5E+02 0.017 30.4 16.9 68 421-488 248-341 (496)
355 3qqz_A Putative uncharacterize 40.9 3.5E+02 0.012 28.6 21.8 161 312-493 27-209 (255)
356 2be1_A Serine/threonine-protei 40.5 3.5E+02 0.012 30.0 14.7 61 428-488 109-184 (339)
357 3das_A Putative oxidoreductase 39.9 2.2E+02 0.0075 31.8 12.9 73 192-270 32-115 (347)
358 1tl2_A L10, protein (tachylect 38.6 42 0.0014 35.5 6.1 69 195-268 91-160 (236)
359 2xzh_A Clathrin heavy chain 1; 37.8 4.8E+02 0.016 29.3 15.5 68 441-508 127-209 (365)
360 3pbp_A Nucleoporin NUP82; beta 37.3 1.2E+02 0.0042 35.1 10.2 121 137-265 71-206 (452)
361 1cru_A Protein (soluble quinop 36.9 2.1E+02 0.0073 33.0 12.6 58 193-256 28-95 (454)
362 4gq2_M Nucleoporin NUP120; bet 36.7 76 0.0026 40.6 9.4 36 313-348 237-273 (950)
363 4fhn_B Nucleoporin NUP120; pro 32.2 67 0.0023 42.0 8.0 35 315-349 241-276 (1139)
364 2g8s_A Glucose/sorbosone dehyd 28.8 1.9E+02 0.0064 32.0 10.0 67 421-487 19-106 (353)
365 3s25_A Hypothetical 7-bladed b 28.4 5.3E+02 0.018 27.7 13.4 81 440-524 88-173 (302)
366 1bpo_A Protein (clathrin); cla 28.1 7.2E+02 0.025 29.0 14.5 68 441-508 126-208 (494)
367 3pt1_A UPF0364 protein YMR027W 24.4 15 0.00053 42.9 -0.1 17 758-774 373-389 (471)
368 2wg3_C Hedgehog-interacting pr 24.4 5.1E+02 0.018 29.9 13.0 58 193-252 15-79 (463)
369 2be1_A Serine/threonine-protei 23.4 34 0.0012 38.3 2.5 59 430-488 10-77 (339)
370 3das_A Putative oxidoreductase 21.1 6.6E+02 0.023 27.8 12.5 69 419-487 31-115 (347)
371 2vpj_A Kelch-like protein 12; 20.0 2.9E+02 0.0098 28.9 9.0 79 440-518 175-264 (301)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=2.9e-87 Score=746.64 Aligned_cols=306 Identities=31% Similarity=0.657 Sum_probs=277.0
Q ss_pred cceecccceEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhc
Q 001245 546 YTRMENLKILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGK 625 (1115)
Q Consensus 546 yt~~~~irI~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~ 625 (1115)
||..++++|+|||||||+..| .++|.+||.....+||||||||||+++++..+.. .+++..+.|.+.|.+
T Consensus 2 yt~~~~~~i~v~TwNvng~~~-~~~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~---------~~~~~~~~W~~~i~~ 71 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSP-KECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFF---------HDTPKEEEWFKAVSE 71 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCC-CSCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTT---------CCCHHHHHHHHHHHH
T ss_pred CceeeccEEEEEEEEcCCccC-chhHHHHhcccCCCCCeEEEEEEecccchhhhcc---------cCcchHHHHHHHHHH
Confidence 899999999999999998876 5789999987667899999999999987654321 233446789999999
Q ss_pred ccCCCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccchhH
Q 001245 626 ILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (1115)
Q Consensus 626 ~L~~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~ 705 (1115)
+|+++.+|++|+++||+||+|+||||+++.++|++|++++|+||+||++||||||+|||.+++++|||||||||||++++
T Consensus 72 ~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~ 151 (313)
T 3mtc_A 72 GLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEY 151 (313)
T ss_dssp HSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGH
T ss_pred hcCCCCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHH
Confidence 99887889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEecccccccCCCChHHHHH
Q 001245 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (1115)
Q Consensus 706 ~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~ 785 (1115)
++||+||.+|++++.|+..... .....|.+||+|||||||||||+.++++++++
T Consensus 152 ~~Rn~d~~~I~~~l~f~~~~~~--------------------------~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~ 205 (313)
T 3mtc_A 152 ERRNQDYKDICSRMQFCQPDPS--------------------------LPPLTISNHDVILWLGDLNYRIEELDVEKVKK 205 (313)
T ss_dssp HHHHHHHHHHHHHCCBCCSCSS--------------------------SCCBCTTSSSEEEEEEECCCCBCSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCc--------------------------cCCccccCCceEEEeccccccccCCCHHHHHH
Confidence 9999999999999999754221 00124679999999999999998779999999
Q ss_pred HHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccccCCccccccccceeeeecCCCcccccc
Q 001245 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASEC 865 (1115)
Q Consensus 786 ~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~ 865 (1115)
+|++++|+.|+++|||++||++|++|.||+|++|+|||||||++|+ +.||||+|+|+|||||||||++..
T Consensus 206 ~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s---~~ydts~k~R~PsWcDRIL~~~~~------- 275 (313)
T 3mtc_A 206 LIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS---DDWDTSEKCRAPAWCDRILWKGKN------- 275 (313)
T ss_dssp HHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTS---SSBCCSTTCCCCBCCEEEEEEESS-------
T ss_pred HHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCC---cccccccCEecccccceEEEecCC-------
Confidence 9999999999999999999999999999999999999999999854 689999999999999999999753
Q ss_pred cCCCccccceeeeeeccccccCCCCceeeEEEEEeeccC
Q 001245 866 SLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVD 904 (1115)
Q Consensus 866 ~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~v~ 904 (1115)
..++.|.|++++++||||||+|.|.+++++|-
T Consensus 276 -------i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~ 307 (313)
T 3mtc_A 276 -------ITQLSYQSHMALKTSDHKPVSSVFDIGVRVVA 307 (313)
T ss_dssp -------EEEEEEEECTTCCSSSSCCEEEEEEEEEEEEC
T ss_pred -------eEEEeeeeccCccCCCccCeEEEEEEEEEEee
Confidence 24689999999999999999999999998773
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.7e-81 Score=702.00 Aligned_cols=292 Identities=30% Similarity=0.543 Sum_probs=244.7
Q ss_pred eecccceEEEEEEeCCCCCCchhhhccccCC-----------CCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcch
Q 001245 548 RMENLKILAGTWNVGQGRASQDALISWLGSA-----------ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVG 616 (1115)
Q Consensus 548 ~~~~irI~v~TWNv~~~~~~~~~L~~wl~~~-----------~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~ 616 (1115)
++..|+|||||||||++.| +++|.+||.+. ..+||||||||||+.+. .
T Consensus 4 ~~~~i~i~vgTwNv~g~~p-~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~--------------------~ 62 (316)
T 4a9c_A 4 EPDMISVFIGTWNMGSVPP-PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVG--------------------D 62 (316)
T ss_dssp --CEEEEEEEEEECTTSCC-CSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSC--------------------H
T ss_pred CCCeEEEEEEEeEcCCcCC-CcchhHhhcccccccCcccccccCCCcEEEEeccccccc--------------------h
Confidence 4678999999999997655 57999999752 13589999999998531 3
Q ss_pred hhHHHHHhcccCC--CCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEE
Q 001245 617 HWWLDMIGKILDD--GSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFV 694 (1115)
Q Consensus 617 ~~W~~~l~~~L~~--~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FV 694 (1115)
+.|.+.|.++|++ ...|.+|.++||+||+|+||||+++.++|++|++++|+||+||++||||||+|||.+++++||||
T Consensus 63 ~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FV 142 (316)
T 4a9c_A 63 REWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142 (316)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEE
Confidence 5699999999974 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccchhHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEecccccc
Q 001245 695 NCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYR 774 (1115)
Q Consensus 695 n~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyR 774 (1115)
|||||||++++++||+||.+|++++.|+..... ......+||+||||||||||
T Consensus 143 n~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~---------------------------~~d~~~~~d~vfw~GDLNyR 195 (316)
T 4a9c_A 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDRQLN---------------------------AFDISLRFTHLFWFGDLNYR 195 (316)
T ss_dssp EEECCCSTTCHHHHHHHHHHHHHHCCC----------------------------------CCTTTTSSEEEEEEECCCC
T ss_pred EeccccCchHHHHHHHHHHHHHHhCCCCCCCcC---------------------------ccccCCcCCeEEEcCCccCC
Confidence 999999999999999999999999999642110 00112478999999999999
Q ss_pred cCCCChHHHHHHHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccc------cCCccccccc
Q 001245 775 LDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYD------SGEKKRVPAW 848 (1115)
Q Consensus 775 i~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yD------ts~k~R~PsW 848 (1115)
|++ ++++++++|++++|+.||++|||++||++|++|.||+|++|+|||||||++++. +.|+ +++|+|+|||
T Consensus 196 i~~-~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~--~~y~~~~~~~~~~k~R~PaW 272 (316)
T 4a9c_A 196 LDM-DIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSR--DTYAWHKQKPTGVRTNVPSW 272 (316)
T ss_dssp BSS-CHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCS--SCBCCC--------CCCCBC
T ss_pred cCC-CHHHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCc--ccccccccccccccccCCcc
Confidence 995 999999999999999999999999999999999999999999999999998764 2453 6788999999
Q ss_pred cceeeeecCCCcccccccCCCccccceeeeeeccccccCCCCceeeEEEEEee
Q 001245 849 CDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIA 901 (1115)
Q Consensus 849 cDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~ 901 (1115)
||||||++.... ...++.|.|++++++||||||+|.|.|.|.
T Consensus 273 cDRIL~~~~~~~-----------~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 273 CDRILWKSYPET-----------HIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CEEEEEEECTTC-----------CEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred cceEEeccCCCC-----------ceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 999999986432 124689999999999999999999999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=1.4e-78 Score=693.41 Aligned_cols=329 Identities=30% Similarity=0.547 Sum_probs=292.0
Q ss_pred CCCchhhHHHhhccccccceecccceEEEEEEeCCCCCCchhhhccccCC-CCCceeEEEEEecc-cCccchhhhhhhhh
Q 001245 529 GPLDSILCKELAGKEFLYTRMENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEV-EMGAGFLAMSAAKE 606 (1115)
Q Consensus 529 ~pld~~i~~~l~~re~~yt~~~~irI~v~TWNv~~~~~~~~~L~~wl~~~-~~~~Di~viGlQEi-~~~~~~~~~~~~ke 606 (1115)
+|++++++++|.+|+.+|+..++++|+|+|||||+..| ..+|.+||... ..+||||||||||+ +++++.+..
T Consensus 2 ~p~~~~~~~~l~~r~~e~~~~~~~~i~v~TwNv~g~~~-~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~----- 75 (347)
T 1i9z_A 2 DPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSA-TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVIS----- 75 (347)
T ss_dssp CHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEECTTCCC-CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----C-----
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcEEEEEeEecCCCCC-chhHHHHhccccCCCCCEEEEEeEEeecCchhhhcc-----
Confidence 57899999999999999999999999999999998776 56799999854 36799999999998 677654321
Q ss_pred hhcCCCCcchhhHHHHHhcccC----CCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEE
Q 001245 607 TVGLEGSAVGHWWLDMIGKILD----DGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGL 682 (1115)
Q Consensus 607 ~~~~~~s~~~~~W~~~l~~~L~----~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~i 682 (1115)
.++...+.|.+.|.++|+ .+..|.+|.+.+|+|++|+||+|+++.++|++|++++|+||++|.+||||||++
T Consensus 76 ----~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~v 151 (347)
T 1i9z_A 76 ----ADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAI 151 (347)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEE
T ss_pred ----cCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEE
Confidence 122335679999999996 357899999999999999999999999999999999999999999999999999
Q ss_pred EEEEecEEEEEEeecccccchhHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCc
Q 001245 683 RVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEA 762 (1115)
Q Consensus 683 r~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 762 (1115)
||.+++++||||||||+||++++++||+||.+|+++|.|... ..|.+|
T Consensus 152 r~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~--------------------------------~~i~~~ 199 (347)
T 1i9z_A 152 RFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRG--------------------------------RSIFNH 199 (347)
T ss_dssp EEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGG--------------------------------CCTTSS
T ss_pred EEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcc--------------------------------cccccC
Confidence 999999999999999999999999999999999999988642 125689
Q ss_pred ceEEEecccccccCCCChHHHHHHHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccccCCc
Q 001245 763 DMVIFLGDFNYRLDGITYDEARDFISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEK 842 (1115)
Q Consensus 763 D~vfw~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k 842 (1115)
|++||||||||||+. +.++++++|++++|+.|+++|||+++|++|++|.||.|++|+|+|||||+.++ +.||||+|
T Consensus 200 d~v~~~GDlNyRi~~-~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~---~~yd~s~k 275 (347)
T 1i9z_A 200 DYVVWFGDFNYRISL-TYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGT---DIYDTSDK 275 (347)
T ss_dssp SEEEEEEECCCCBSS-CHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTS---SCBCCSTT
T ss_pred ccEEEecccccccCC-CHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCC---cccccccc
Confidence 999999999999995 99999999999999999999999999999999999999999999999999864 68999999
Q ss_pred cccccccceeeeecCCCcccccccCCCccccceeeeeeccccccCCCCceeeEEEEEeeccCHHHHHHHHHHHhhcc
Q 001245 843 KRVPAWCDRILYRDSRSDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVDESVRRQEFGDIMTSN 919 (1115)
Q Consensus 843 ~R~PsWcDRIL~~~~~~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~v~~~~~~~~~~ei~~~~ 919 (1115)
+|+|||||||||++. .+++.|.+++ +..||||||+|.|.+.++.+|+++|+++++||+++.
T Consensus 276 ~R~PsWcDRIL~~~~---------------l~~~~Y~~~~-~~~SDH~PV~a~f~~~v~~~~~~~~~~~~~~~~~~~ 336 (347)
T 1i9z_A 276 HRVPAWTDRILYRGE---------------LVPHSYQSVP-LYYSDHRPIYATYEANIVKVDREKKKILFEELYNQR 336 (347)
T ss_dssp CCCCBCCEEEEEESS---------------CEEEEEEECC-CCSSSBCCEEEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred ccCCcccceEEEeCC---------------EEEEEEEecC-ccCCCcCCceeEEEEEEecCCHHHHHHHHHHHHHHH
Confidence 999999999999861 1458999987 999999999999999999999999999999999863
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.2e-75 Score=670.33 Aligned_cols=305 Identities=26% Similarity=0.454 Sum_probs=265.5
Q ss_pred cccceecccceEEEEEEeCCCCCCchhhhccccCC--CCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHH
Q 001245 544 FLYTRMENLKILAGTWNVGQGRASQDALISWLGSA--ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLD 621 (1115)
Q Consensus 544 ~~yt~~~~irI~v~TWNv~~~~~~~~~L~~wl~~~--~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~ 621 (1115)
.+|+..++++|+|+|||||+.++.+++|.+||... ...||||||||||++.. .+.|.+
T Consensus 18 ~~~~~~~~l~i~v~TwNv~g~~~~~~~L~~~l~~~~~~~~pDI~viGlQEi~~~--------------------~~~W~~ 77 (357)
T 2xsw_A 18 ARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSD--------------------RREWET 77 (357)
T ss_dssp HHHCTTCEEEEEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSC--------------------HHHHHH
T ss_pred hhcCCCCCceEEEEEEecCCCCCCcccHHHHhccccccCCCCEEEEEeeeccch--------------------HHHHHH
Confidence 46788899999999999998766667999999642 34689999999998531 246999
Q ss_pred HHhcccCCCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeeccccc
Q 001245 622 MIGKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAH 701 (1115)
Q Consensus 622 ~l~~~L~~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~ 701 (1115)
.|.++|+ ..|+++.+.+|+|++|+||+|+++.++|++|++++|+||+||++||||||+|||.+++++|||||||||||
T Consensus 78 ~l~~~L~--~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~ 155 (357)
T 2xsw_A 78 RLQETLG--PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSG 155 (357)
T ss_dssp HHHHHHC--TTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHHHhC--CcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCC
Confidence 9999995 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEecccccccCCCChH
Q 001245 702 LEAVNRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYD 781 (1115)
Q Consensus 702 ~~~~~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~ 781 (1115)
++++++||+||.+|++++.|++.....+ + .+. .....+.+||+|||||||||||++ +++
T Consensus 156 ~~~~~~Rn~d~~~I~~~l~f~~~~~~~~----------~-~~~---------~~~~~~~~~d~vfw~GDlNyRi~~-~~~ 214 (357)
T 2xsw_A 156 DGKVAERLLDYTRTVQALVLPRNVPDTN----------P-YRS---------SAADVTTRFDEVFWFGDFNFRLSG-GRT 214 (357)
T ss_dssp TTCHHHHHHHHHHHHHHCCCCSSSCCSS----------G-GGC---------BTTBGGGSSSEEEEEEECCCCBSS-CHH
T ss_pred CchHHHHHHHHHHHHHHhcccccccccc----------c-ccc---------cccccccccceEEEecccCccccc-chH
Confidence 9999999999999999999975422100 0 000 001124579999999999999996 889
Q ss_pred HHHHHHh---hcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccccCCccccccccceeeeecCC
Q 001245 782 EARDFIS---QRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSR 858 (1115)
Q Consensus 782 ~v~~~i~---~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~ 858 (1115)
+++++|+ +++|+.|+++|||+++|++|++|.||+|++|+|||||||+.++ +.||||+|+|+|||||||||++..
T Consensus 215 ~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t---~~Ydts~k~R~PaWcDRIL~~~~~ 291 (357)
T 2xsw_A 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGK---DTYDSTSKQRTPSYTDRVLYRSRH 291 (357)
T ss_dssp HHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTS---SSBCCSTTCCCCBCCEEEEEEESS
T ss_pred HHHHHHhhcchhhHHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCC---ccccccCCCCCCcccceEEEecCC
Confidence 9999996 5789999999999999999999999999999999999999864 689999999999999999999864
Q ss_pred CcccccccCCCccccceeeeeeccccccCCCCceeeEEEEEeeccCH
Q 001245 859 SDLASECSLECPVASSILRYEACMDVTDSDHKPVRCIFSVDIARVDE 905 (1115)
Q Consensus 859 ~~~~~~~~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v~~v~~ 905 (1115)
... .+++.|.+++++++||||||+|.|.+.++..++
T Consensus 292 ~~~-----------i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~~ 327 (357)
T 2xsw_A 292 KGD-----------ICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRD 327 (357)
T ss_dssp TTS-----------EEEEEEEECTTCCSSSSCCEEEEEEEECCCCCS
T ss_pred CCc-----------eEEEEeEecccccCCCcCCceeEEEEEEecCCc
Confidence 321 256899999999999999999999999987654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=3.4e-60 Score=530.31 Aligned_cols=276 Identities=20% Similarity=0.374 Sum_probs=238.8
Q ss_pred ecccceEEEEEEeCCCCCCchhhhccccCC-CCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhccc
Q 001245 549 MENLKILAGTWNVGQGRASQDALISWLGSA-ASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (1115)
Q Consensus 549 ~~~irI~v~TWNv~~~~~~~~~L~~wl~~~-~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L 627 (1115)
.++++|+|+||||++..|+ ++|.+|+... ..+||||||||||+++++.. ....+.|.+.|.+.|
T Consensus 4 ~~~~~i~V~T~Nv~~~~~~-~~l~~wl~~~~~~~pDI~viglQEv~~~~~~--------------~~~~~~w~~~l~~~L 68 (282)
T 2imq_X 4 PAQLSVHTVSWNSGHERAP-TNLEELLGLNSGETPDVIAVAVQGFGFQTDK--------------PQQGPACVKNFQSLL 68 (282)
T ss_dssp CSEEEEEEEEEEEETCCCC-SCCHHHHTCTTSCCCSEEEEEEEESCTTTCT--------------TCCHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEeCCCCcCc-hhHHHHhcccccCCCCEEEEEeeeecccccc--------------chhhHHHHHHHHHhc
Confidence 4678999999999877664 6789999743 36799999999999865321 022467999999999
Q ss_pred CCCCceEEEee--eccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccchhH
Q 001245 628 DDGSTFERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAV 705 (1115)
Q Consensus 628 ~~~~~y~~v~s--~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~ 705 (1115)
+ ...|.++.+ .+|+|++++||+|+++.+.|+++++ +|++|.+||||||++||.+++++||||||||+|+++++
T Consensus 69 ~-~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~ 143 (282)
T 2imq_X 69 T-SKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTS 143 (282)
T ss_dssp H-HTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCT
T ss_pred C-CCceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchH
Confidence 6 467999999 8999999999999999999888764 57778899999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhcccCCCCCccchhhcCCchhhhhcccCCCCCCCcccCCCCcCCcceEEEecccccccCCCChHHHHH
Q 001245 706 NRRNADFDHVYRTMTFCRPSNLCSAAAAGASSVVQMLRSTNPLSGLTVEGVPELSEADMVIFLGDFNYRLDGITYDEARD 785 (1115)
Q Consensus 706 ~~Rn~d~~~I~~~l~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~vfw~GDlNyRi~~~~~~~v~~ 785 (1115)
++||+|++.|++++.+ +.++|++|||||||||++. +.+++++
T Consensus 144 ~~R~~~~~~I~~~~~~-------------------------------------~~~~~~vi~~GDfN~r~~~-~~~~~~~ 185 (282)
T 2imq_X 144 TNTKYAYDTRLDYSKK-------------------------------------DDPSDFLFWIGDLNVRVET-NATHAKS 185 (282)
T ss_dssp TSSSSSCCGGGCTTSS-------------------------------------SSCCSEEEEEEECSCCBCS-CHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-------------------------------------cCccceEEEecccccccCC-CHHHHHH
Confidence 9999999998876532 2467899999999999996 8999999
Q ss_pred HHhhcChhHHhcchHHHHHHhcCCcccCccccCcccCCCccccccccCCcccccCCccccccccceeeeecCCCcccccc
Q 001245 786 FISQRCFDWLRERDQLRAEMEAGNVFQGMREADIKFPPTYKFEKHLAGLAGYDSGEKKRVPAWCDRILYRDSRSDLASEC 865 (1115)
Q Consensus 786 ~i~~~~~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYKyd~~~~g~~~yDts~k~R~PsWcDRIL~~~~~~~~~~~~ 865 (1115)
+|+++.|+.|+++|||..+++ +.+|.||.|++|+|+|||||+.++ +.||+ +|+|||||||||++.....
T Consensus 186 ~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~---~~y~~---~R~Psw~DrIl~~~~~~~~---- 254 (282)
T 2imq_X 186 LVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNT---DEYDL---SATPSWTDRALYKSGTGKT---- 254 (282)
T ss_dssp HHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTS---SCBCT---TSCCBCCEEEEEECSSSCC----
T ss_pred HHhhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCC---ccccc---cCCccccceEEEecCCCCc----
Confidence 999999999999999999999 999999999999999999999865 68985 6999999999999753221
Q ss_pred cCCCccccceeeeeeccccccCCCCceeeEEEEEe
Q 001245 866 SLECPVASSILRYEACMDVTDSDHKPVRCIFSVDI 900 (1115)
Q Consensus 866 ~~~~p~~~~~~~Y~s~~~~~~SDHkPV~a~f~v~v 900 (1115)
.+++.|.+++++..||||||+|.|.+.+
T Consensus 255 -------~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 255 -------IQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp -------EEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred -------eEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 2468999998999999999999999864
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.9e-36 Score=372.55 Aligned_cols=365 Identities=16% Similarity=0.167 Sum_probs=258.5
Q ss_pred cceeeEEEEEeCC---eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE
Q 001245 131 IGCFLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 131 ~~~~l~~l~~~~~---~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L 206 (1115)
+...+..++.+.. .|.+ +.|++|++||..++.+... ...| ..+|.|++|+|+|++|
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~-------------------l~~H-~~~V~~v~fspdg~~l 205 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-------------------FGEH-TKFVHSVRYNPDGSLF 205 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE-------------------ECCC-SSCEEEEEECTTSSEE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee-------------------eccc-cCceEEEEECCCCCEE
Confidence 4456777777733 2444 6899999999887665442 1246 7899999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEee-------cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeecc
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-------AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSL 278 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~-------GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~ 278 (1115)
|||+.|++||+||+.++. ....+. +|.++|++|+|+|+|+ |+|||.|++||+||+.++++..++
T Consensus 206 as~s~D~~i~lwd~~~g~--------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 206 ASTGGDGTIVLYNGVDGT--------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp EEEETTSCEEEEETTTCC--------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECCCcEEEEECCCCc--------EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 999999999999987642 344553 8999999999999998 899999999999999987654333
Q ss_pred CCCc-------------ceeEEEEeeeeeeeeccc--ceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc
Q 001245 279 KPEE-------------RHTAALIVERSYIDLRSH--LSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR 342 (1115)
Q Consensus 279 ~~~~-------------~~~~a~~~~~~~~~l~~h--~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg 342 (1115)
.... ..+++...+.. +.+... .............+.++++++++..|++++ |++|++||+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGF-INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCC-EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCc-EEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 2110 01111100000 000000 000000112336799999999999999886 789999999999
Q ss_pred cEEEEE-ecCCceeeEEeccCCCCcc-ccccceEEEEecCCC--------------------------------------
Q 001245 343 ELLKVF-NIDGQIENRVDMSLLPDFA-MEDEFKTKIVTSSKK-------------------------------------- 382 (1115)
Q Consensus 343 ~ll~tl-~~~~~~~~~v~~s~~~~~~-~~~~~~~~~~~~~~~-------------------------------------- 382 (1115)
++...+ ..|...+..+.+++..... ...+..+++|.....
T Consensus 357 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~ 436 (611)
T 1nr0_A 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 436 (611)
T ss_dssp CEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEE
T ss_pred ceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEE
Confidence 988776 4455566677776543221 112223334321110
Q ss_pred -----------CccceeeeeeccccceEEeccCc-EEEEeccc-c-----cccCCCceEEEEEcCCCc-EEEEeCCCeEE
Q 001245 383 -----------DKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG-G-----FGDDNRRTEALTTSIDGM-IWTGGANGLLL 443 (1115)
Q Consensus 383 -----------~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g-~-----l~~h~~~V~aVa~S~Dg~-laSGS~DgtIk 443 (1115)
......++|+++++.+++|+.|+ +++|+..+ . ..+|...|.+|+|+|||. |++|+.|++|+
T Consensus 437 ~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~ 516 (611)
T 1nr0_A 437 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVI 516 (611)
T ss_dssp EETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEE
Confidence 01124678888888888888775 66666532 1 146888899999999997 78999999999
Q ss_pred EEcC-C-CCeeEE--eecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cc-cc-cccccc-cCCEEEEEe--cCCEE
Q 001245 444 QWDP-N-GNRLQD--FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN-LL-GGWVAH-SSPVIKMAV--GAGYI 511 (1115)
Q Consensus 444 lWD~-t-G~~l~t--l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~-ll-~~l~gH-~~~V~sva~--dg~~l 511 (1115)
+||+ + ++++++ +.+|...|++|+ |||++||+|+.|++|+|||++ +. ++ ..+.+| .+.|+++++ +++ |
T Consensus 517 ~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l 595 (611)
T 1nr0_A 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-I 595 (611)
T ss_dssp EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-E
T ss_pred EEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-E
Confidence 9998 4 666654 345999999998 789999999999999999986 43 44 678899 899999885 666 9
Q ss_pred EeecCCCceEEeee
Q 001245 512 FTLANHGGIRGWNV 525 (1115)
Q Consensus 512 aSgS~DgtIRlWdl 525 (1115)
+|+|.|++||+|++
T Consensus 596 ~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 596 VSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTSCEEEEEC
T ss_pred EEecCCCCEEEEec
Confidence 99999999999986
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.7e-36 Score=360.42 Aligned_cols=331 Identities=18% Similarity=0.238 Sum_probs=269.4
Q ss_pred eeeEEEEEe-CCe-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 133 CFLRTIVCT-EEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 133 ~~l~~l~~~-~~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
..++.++.+ +++ |.+ +.|++|++||.. +..... ...| ..+|.+++|+|+++.|++|
T Consensus 222 ~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~-------------------~~~~-~~~v~~v~~~~d~~~l~~~ 280 (577)
T 2ymu_A 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQT-------------------LTGH-SSSVNGVAFRPDGQTIASA 280 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEE-------------------ECCC-SSCEEEEEECTTSSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEE-------------------EecC-CCCEEEEEEcCCCCEEEEE
Confidence 344555555 333 433 689999999964 333321 1245 7899999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
+.|++|++||..+ +....+.+|.++|++++|+|+++ |++++.|++|++||+.+....
T Consensus 281 ~~d~~i~~w~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~------------- 338 (577)
T 2ymu_A 281 SDDKTVKLWNRNG---------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ------------- 338 (577)
T ss_dssp ETTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-------------
T ss_pred eCCCEEEEEeCCC---------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-------------
Confidence 9999999999875 44667899999999999999998 789999999999998653211
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCcc
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~ 367 (1115)
.+.+|. ..+.++++++++..+++++ +++|++|| .+++++.++..|...+..+.++++....
T Consensus 339 -------~~~~~~----------~~v~~~~~s~~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 339 -------TLTGHS----------SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp -------EECCCS----------SCEEEEEECTTSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred -------EEeCCC----------CCEEEEEECCCCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 122333 5788899999999998876 68999999 4788999999888888899999876543
Q ss_pred --ccccceEEEEecCCC--------CccceeeeeeccccceEEeccCc-EEEEeccc----ccccCCCceEEEEEcCCCc
Q 001245 368 --MEDEFKTKIVTSSKK--------DKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG----GFGDDNRRTEALTTSIDGM 432 (1115)
Q Consensus 368 --~~~~~~~~~~~~~~~--------~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g----~l~~h~~~V~aVa~S~Dg~ 432 (1115)
...+..+++|....+ ......+.|++++..+++++.|+ ++.|+..+ .+.+|...|.+++++||+.
T Consensus 401 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 401 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp EEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSC
T ss_pred EEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCC
Confidence 234455677754322 22335688999998888887765 66676543 4567889999999999998
Q ss_pred -EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEEe--c
Q 001245 433 -IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--G 507 (1115)
Q Consensus 433 -laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~--d 507 (1115)
|++|+.|++|++||.+|++++++.+|...|++|+ |||++||+|+.||+|+|||.+|+++.++.+|++.|+++++ |
T Consensus 481 ~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 481 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCC
Confidence 7899999999999999999999999999999999 7899999999999999999999999999999999999985 8
Q ss_pred CCEEEeecCCCceEEee
Q 001245 508 AGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 508 g~~laSgS~DgtIRlWd 524 (1115)
|++|+|+|.|++|++||
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 99999999999999997
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-36 Score=352.90 Aligned_cols=270 Identities=18% Similarity=0.215 Sum_probs=229.2
Q ss_pred eeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 187 SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 187 s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
.+| .++|+|++|+|++.+|+||+.||+|++||+.++ +...++++|.++|++|+|+|+|+ |+|||.|++|+
T Consensus 105 ~gh-~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 105 SGH-RSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp ECC-SSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred ccc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 356 889999999999999999999999999999874 34678999999999999999998 78999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
+||+.++++... +.+|. ..+.++++.+++..+++++ |++|++||++++.+
T Consensus 176 iwd~~~~~~~~~-------------------~~~h~----------~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 176 LWDFQGFECIRT-------------------MHGHD----------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226 (410)
T ss_dssp EEETTSSCEEEC-------------------CCCCS----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEeCCCCceeEE-------------------EcCCC----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 999987655421 23454 5788999999999888876 78999999999999
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccC
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDD 418 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h 418 (1115)
++++.+|...+..+. +.+++..+++|+.| .++.|+.. ..+.+|
T Consensus 227 ~~~~~~h~~~v~~~~-------------------------------~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h 275 (410)
T 1vyh_C 227 VKTFTGHREWVRMVR-------------------------------PNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275 (410)
T ss_dssp EEEEECCSSCEEEEE-------------------------------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred EEEEeCCCccEEEEE-------------------------------ECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC
Confidence 999987766544333 34445556666655 46666542 346678
Q ss_pred CCceEEEEEcCC--------------------C-cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEe
Q 001245 419 NRRTEALTTSID--------------------G-MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWV 474 (1115)
Q Consensus 419 ~~~V~aVa~S~D--------------------g-~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaS 474 (1115)
...|.+++++|+ | .+++|+.|++|++||+ +|+++.++.+|...|++++ ++|++|++
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 355 (410)
T 1vyh_C 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS 355 (410)
T ss_dssp SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEE
T ss_pred CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEE
Confidence 889999999986 3 3899999999999999 8999999999999999999 68999999
Q ss_pred eecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 475 GYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 475 Gs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
|+.||+|++||+. ++++.++.+|.+.|+++++ ++.+|+|||.|++||+|++
T Consensus 356 ~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 356 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999987 8899999999999999996 6789999999999999986
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-35 Score=360.02 Aligned_cols=367 Identities=13% Similarity=0.087 Sum_probs=253.7
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCccccc--cc----ccccccCCCC---------------------CC
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESE--SD----SVSVSKSKGE---------------------DG 180 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~--~~----~~~~~~~~~d---------------------~~ 180 (1115)
+...+..++.+ +++++| +.|++|||||+.++..... +. .+.....+.| ..
T Consensus 58 h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~ 137 (611)
T 1nr0_A 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 137 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC
Confidence 44557777777 566666 5799999999976543210 00 0000000000 00
Q ss_pred CCCceeeeccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEE
Q 001245 181 TAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSG 258 (1115)
Q Consensus 181 ~~~~~~s~~G~~~V~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~Sg 258 (1115)
.......+| ..+|.+++|+|++. +|+||+.|++|++||..++ +...++.+|.+.|++|+|+|+|+ |+||
T Consensus 138 ~~~~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--------~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 138 TSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--------KFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp CBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--------EEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCcceecCC-CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--------eEeeeeccccCceEEEEECCCCCEEEEE
Confidence 000011245 78999999999986 6999999999999998752 45678999999999999999998 7899
Q ss_pred eCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEE
Q 001245 259 SEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALW 337 (1115)
Q Consensus 259 S~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lW 337 (1115)
|.|++||+||+.++++...+... .....+|. ..|.++++++++..|++++ |++|+||
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~------------~~~~~~h~----------~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDD------------SLKNVAHS----------GSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCT------------TSSSCSSS----------SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCCcEEEEECCCCcEeeeeccc------------cccccccC----------CCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999999999887654222100 00011344 6788999999999998876 6899999
Q ss_pred EcCCccEEEEEe-------------------------------------------cCCceeeEEeccCCCCcc--ccccc
Q 001245 338 DARTRELLKVFN-------------------------------------------IDGQIENRVDMSLLPDFA--MEDEF 372 (1115)
Q Consensus 338 D~~tg~ll~tl~-------------------------------------------~~~~~~~~v~~s~~~~~~--~~~~~ 372 (1115)
|+.++++++++. +|...++.+.++++.... ...+.
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 999988776653 344445667777655432 23344
Q ss_pred eEEEEecCCC----------CccceeeeeeccccceEEeccCcEEEEecccc-c--------------------------
Q 001245 373 KTKIVTSSKK----------DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG-F-------------------------- 415 (1115)
Q Consensus 373 ~~~~~~~~~~----------~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~-l-------------------------- 415 (1115)
.+++|..... ......+.|++++..+..+.++.++.|...+. +
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 5666653221 11223455554443332333334555543210 0
Q ss_pred ------------------ccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCC-CCe--eEEeecCCCcEEEEE--ecCCE
Q 001245 416 ------------------GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN-GNR--LQDFQYLPFAVQCLC--TFGSQ 471 (1115)
Q Consensus 416 ------------------~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~t-G~~--l~tl~gH~~~V~sla--~dG~~ 471 (1115)
..+...+.+++++|||. ||+|+.|++|++||+. +.+ +++ .+|...|++|+ |||++
T Consensus 427 ~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp EEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSE
T ss_pred EEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCE
Confidence 01234578899999998 7999999999999994 432 344 78999999999 79999
Q ss_pred EEeeecccEEEEEeCC--Cccccc--cccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCC
Q 001245 472 IWVGYMNGIVQVLDLE--GNLLGG--WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 472 LaSGs~DGtIrlWD~~--G~ll~~--l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~ 529 (1115)
||+|+.|++|++||+. ++++.. +.+|++.|+++++ ||++|+|||.|++||+|++..+.
T Consensus 506 las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 506 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred EEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 9999999999999986 555554 4569999999995 88999999999999999987653
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=340.02 Aligned_cols=289 Identities=14% Similarity=0.058 Sum_probs=212.9
Q ss_pred cceeeEEEEEe-CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
....+..++++ ++++++ ++|.++|+||......... ..+...........+ ..+|.+++|++++ .|++
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~v~~~~~s~d~-~l~~ 98 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDP--------CAAPNEGFCSAGVQT-EAGVADLTWVGER-GILV 98 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSG--------GGTTCGGGCSEEEEE-SSCEEEEEEETTT-EEEE
T ss_pred ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccc--------cccCCcceeeeeecc-CCCEEEEEEeCCC-eEEE
Confidence 34557788887 556665 6799999998432111000 000000000111122 5689999999985 6889
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 209 GS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
|+.||+||+||++++.+ .......+.||.+.|++|+|+|+|+ |+|||.|++||+||++++++..
T Consensus 99 ~s~dg~v~lWd~~~~~~----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~----------- 163 (344)
T 4gqb_B 99 ASDSGAVELWELDENET----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS----------- 163 (344)
T ss_dssp EETTSEEEEEEECTTSS----CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------
T ss_pred EECCCEEEEEeccCCCc----eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-----------
Confidence 99999999999987432 1112234579999999999999998 7999999999999998876542
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
.+.+|. ..|.++++++++. .+++++ |++|+|||+++++++..+...
T Consensus 164 --------~~~~h~----------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------------- 211 (344)
T 4gqb_B 164 --------SYRAHA----------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-------------- 211 (344)
T ss_dssp --------EECCCS----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------------
T ss_pred --------EEcCcC----------CceEEEEecCCCCCceeeeccccccccccccccceeeeeecc--------------
Confidence 234555 6788899988764 567765 789999999998876654211
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-c-EEEEeCCCeEE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLL 443 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~-laSGS~DgtIk 443 (1115)
.+...+.+++++|++ . +++|+.||+|+
T Consensus 212 ---------------------------------------------------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 212 ---------------------------------------------------APGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp -----------------------------------------------------CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred ---------------------------------------------------eeeccceeeeecCCCCcceEEeccCCcEE
Confidence 112245677887754 4 68999999999
Q ss_pred EEcC-CCCeeEEeecCCCcEEEEE--ecC-CEEEeeecccEEEEEeCCCccccccccccCCEEEEEe--cCC-EEEeecC
Q 001245 444 QWDP-NGNRLQDFQYLPFAVQCLC--TFG-SQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAG-YIFTLAN 516 (1115)
Q Consensus 444 lWD~-tG~~l~tl~gH~~~V~sla--~dG-~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~--dg~-~laSgS~ 516 (1115)
+||+ ++++++++.+|...|++|+ |+| ++||+|+.||+|+|||++...+..+.+|.+.|++|++ +++ +++|+|.
T Consensus 241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence 9999 8999999999999999999 677 5899999999999999984344568999999999996 554 6789999
Q ss_pred CCceEEeeecC
Q 001245 517 HGGIRGWNVTS 527 (1115)
Q Consensus 517 DgtIRlWdl~~ 527 (1115)
|++|++|++.+
T Consensus 321 D~~v~~w~v~~ 331 (344)
T 4gqb_B 321 DHQVVHHVVPT 331 (344)
T ss_dssp TSCEEEEECCC
T ss_pred CCeEEEEECCC
Confidence 99999999864
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.2e-35 Score=336.63 Aligned_cols=288 Identities=14% Similarity=0.108 Sum_probs=214.5
Q ss_pred eccCCceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCC
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHR------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEG 261 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~------DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~D 261 (1115)
.| ...|.||+|+|||++|||||. |++|++|+..++.. .........+|.+.|++|+|+|+++++++|.|
T Consensus 40 ~H-~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~----~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~d 114 (357)
T 4g56_B 40 CM-EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP----NESLCTAGVQTEAGVTDVAWVSEKGILVASDS 114 (357)
T ss_dssp CC-CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTEEEEEETT
T ss_pred cc-cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc----ceeEecccCCCCCCEEEEEEcCCCCEEEEECC
Confidence 46 778999999999999999998 78899999875321 12233456789999999999999999999999
Q ss_pred CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcC
Q 001245 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (1115)
Q Consensus 262 gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~ 340 (1115)
|+|||||+.+++..... .....+|. ..|.++++++++..|++++ |++|+|||++
T Consensus 115 g~v~lWd~~~~~~~~~~---------------~~~~~~h~----------~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 115 GAVELWEILEKESLLVN---------------KFAKYEHD----------DIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp SCEEEC--------CCC---------------CEEECCCS----------SCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CEEEEeeccccceeEEE---------------eeccCCCC----------CCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 99999999886543211 01122444 6789999999999999876 6899999999
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc-CcEEEEecc-c-----
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAK-G----- 413 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~-d~v~~~~~~-g----- 413 (1115)
+++++..|..|...++.+.+++... ..+++++. +.++.|+.. +
T Consensus 170 ~~~~~~~~~~h~~~v~~v~~s~~~~------------------------------~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 170 QKAVLKSYNAHSSEVNCVAACPGKD------------------------------TIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTCS------------------------------SCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCC------------------------------ceeeeeccCCceEEEECCCCceeee
Confidence 9999999988776666665554321 12344444 346666542 1
Q ss_pred -ccccCCCceEEEEEcCCC-c-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecC-CEEEeeecccEEEEEeC
Q 001245 414 -GFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFG-SQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 414 -~l~~h~~~V~aVa~S~Dg-~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG-~~LaSGs~DGtIrlWD~ 486 (1115)
.+..+...+.+++++|++ . +++|+.|++|++||+ ++++++++.+|...|++|+ |+| ++||+|+.||+|+|||+
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 123455678999999975 3 789999999999999 8999999999999999999 566 68999999999999999
Q ss_pred C-CccccccccccCCEEEEEe---cCCEEEeecCCCceEEeeecCCCCCchhhH
Q 001245 487 E-GNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVTSPGPLDSILC 536 (1115)
Q Consensus 487 ~-G~ll~~l~gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~~p~pld~~i~ 536 (1115)
+ +++++. .+|.+.|++|++ |+++|+|+|.|++|++|++.+++...+++.
T Consensus 300 ~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i~ 352 (357)
T 4g56_B 300 DFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLIA 352 (357)
T ss_dssp TSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----------
T ss_pred CCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccccccC
Confidence 8 666554 589999999995 678999999999999999988766655443
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7e-34 Score=343.29 Aligned_cols=363 Identities=17% Similarity=0.202 Sum_probs=277.9
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ +++++| +.|++|+|||. ++.+..+ ..+| .++|.||+|+|+|++||
T Consensus 15 H~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh-~~~V~~l~fspdg~~la 73 (577)
T 2ymu_A 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-------------------LTGH-SSSVWGVAFSPDGQTIA 73 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-------------------EECC-SSCEEEEEECTTSSEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCC-CCCEEEEEECCCCCEEE
Confidence 44567778877 455555 57899999995 5655442 2256 88999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeec---------
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALS--------- 277 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~--------- 277 (1115)
||+.|++|++||+.+ +.+.++.+|.++|++|+|+|+|+ |++++.|+++++|+.........
T Consensus 74 s~~~d~~i~vWd~~~---------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (577)
T 2ymu_A 74 SASDDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 144 (577)
T ss_dssp EEETTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEE
T ss_pred EEeCCCEEEEEECCC---------CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceee
Confidence 999999999999864 45778999999999999999998 78999999999999765322111
Q ss_pred --cCCCcceeEEEEeeeeeeeecccc-eecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCc
Q 001245 278 --LKPEERHTAALIVERSYIDLRSHL-SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQ 353 (1115)
Q Consensus 278 --~~~~~~~~~a~~~~~~~~~l~~h~-~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~ 353 (1115)
+.++...+....... ...+.... ............+.++++.+++..+++++ +++|++||. ++++++++..+..
T Consensus 145 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~ 222 (577)
T 2ymu_A 145 VAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 222 (577)
T ss_dssp EEECTTSSCEEEEETTS-EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred eeeecCCccceeccccc-ceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCC
Confidence 111111111110000 00000000 00011122346788899999998888876 689999995 7888999988888
Q ss_pred eeeEEeccCCCCcc--ccccceEEEEecCCC--------CccceeeeeeccccceEEeccC-cEEEEeccc----ccccC
Q 001245 354 IENRVDMSLLPDFA--MEDEFKTKIVTSSKK--------DKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKG----GFGDD 418 (1115)
Q Consensus 354 ~~~~v~~s~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~g----~l~~h 418 (1115)
.+..+.+++..... ...+..+++|....+ ......+.|.+++..+++++.+ .++.|+..+ .+.+|
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h 302 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 302 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecC
Confidence 88889999876543 234455677753322 2234578888998888888766 477776643 45678
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccc
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWV 495 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~ 495 (1115)
...|.+++++||+. +++++.|++|++||.++..+.++.+|...|++++ ++|++|++|+.||+|++||.+++++..+.
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~ 382 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 382 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEec
Confidence 99999999999987 7899999999999999999999999999999998 78999999999999999999999999999
Q ss_pred cccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 496 gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
+|...|.++++ ||++|++++.|++|++||.
T Consensus 383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 99999999985 7899999999999999995
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-34 Score=327.58 Aligned_cols=274 Identities=16% Similarity=0.167 Sum_probs=224.7
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++++++ +.|++|++||+.++..... ...| ..+|.+++|+|+|++|+
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~-~~~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA-------------------IPLR-SSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------EECS-SSCEEEEEECTTSSEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------eecC-CccEEEEEECCCCCEEE
Confidence 34456667666 444444 6899999999988775542 1245 77899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
+|+.|++|++|++.++. ........+.+|.+.|.+++|++++.|++||.|++|++||++++++..
T Consensus 114 s~~~d~~v~iw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~----------- 178 (340)
T 1got_B 114 CGGLDNICSIYNLKTRE----GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT----------- 178 (340)
T ss_dssp EEETTCEEEEEETTTCS----BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE-----------
T ss_pred EEeCCCeEEEEECccCC----CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE-----------
Confidence 99999999999998632 112345678999999999999999999999999999999998865431
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCc
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~ 366 (1115)
.+.+|. ..+.++++++++..+++++ |++|++||+++++++.++.
T Consensus 179 --------~~~~h~----------~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~----------------- 223 (340)
T 1got_B 179 --------TFTGHT----------GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT----------------- 223 (340)
T ss_dssp --------EECCCS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-----------------
T ss_pred --------EEcCCC----------CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-----------------
Confidence 123454 6788999999999888876 7899999999887765542
Q ss_pred cccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEE
Q 001245 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (1115)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklW 445 (1115)
+|...|.+++++|++. +++|+.|++|++|
T Consensus 224 --------------------------------------------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 224 --------------------------------------------------GHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp --------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --------------------------------------------------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 2444677889999987 7999999999999
Q ss_pred cC-CCCeeEEeec--CCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCC
Q 001245 446 DP-NGNRLQDFQY--LPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANH 517 (1115)
Q Consensus 446 D~-tG~~l~tl~g--H~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~D 517 (1115)
|+ +++++.++.. +...|++++ ++|++|++|+.||+|++||+. ++.+..+.+|.+.|.++++ +|++|+|||.|
T Consensus 254 d~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred ECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 99 7787777753 334799998 789999999999999999986 8888999999999999985 78899999999
Q ss_pred CceEEee
Q 001245 518 GGIRGWN 524 (1115)
Q Consensus 518 gtIRlWd 524 (1115)
++||+||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999997
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=329.48 Aligned_cols=271 Identities=15% Similarity=0.141 Sum_probs=223.0
Q ss_pred eccCCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC
Q 001245 188 VKGVSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG 262 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d----g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg 262 (1115)
.| .++|.|++|+++ +.+|+|||.|++||+|++..+.. .....+.||..+|.+++|++++. ++|||.|+
T Consensus 30 ~H-~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 30 AH-DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp SS-SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred cC-CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 46 889999999874 67999999999999999875321 23456899999999999999997 78999999
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCC
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~t 341 (1115)
+||+||++++++... +..+. ..+.++++++++..+++++ +++|++||+.+
T Consensus 103 ~i~lWd~~~~~~~~~-------------------~~~~~----------~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~ 153 (321)
T 3ow8_A 103 HIRLWDLENGKQIKS-------------------IDAGP----------VDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153 (321)
T ss_dssp EEEEEETTTTEEEEE-------------------EECCT----------TCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred cEEEEECCCCCEEEE-------------------EeCCC----------ccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence 999999988754411 11122 3455678889999998876 68999999999
Q ss_pred ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-----ccc
Q 001245 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGF 415 (1115)
Q Consensus 342 g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l 415 (1115)
++....+..++..+.. +.|++++..+++|+.|+ ++.|+.. ..+
T Consensus 154 ~~~~~~~~~~~~~v~~-------------------------------~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~ 202 (321)
T 3ow8_A 154 GKKEYSLDTRGKFILS-------------------------------IAYSPDGKYLASGAIDGIINIFDIATGKLLHTL 202 (321)
T ss_dssp CSEEEEEECSSSCEEE-------------------------------EEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CceeEEecCCCceEEE-------------------------------EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 9988877665544333 35555666667776654 6666652 245
Q ss_pred ccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccc
Q 001245 416 GDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNL 490 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~l 490 (1115)
.+|...|.+++++||+. |++|+.|++|++||+ +++++.++.+|...|++++ |+|++|++|+.||+|+|||+. +++
T Consensus 203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282 (321)
T ss_dssp CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence 67889999999999997 799999999999999 7899999999999999999 689999999999999999987 889
Q ss_pred ccccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 491 LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
+.++.+|.+.|+++++ +|++|+|++.|++|++||.
T Consensus 283 ~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 283 VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999996 7889999999999999995
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-34 Score=334.33 Aligned_cols=294 Identities=17% Similarity=0.195 Sum_probs=224.9
Q ss_pred cceeeEEEEEe-CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCC-CCCCCcee---eeccCCceEEEEEcCCCC
Q 001245 131 IGCFLRTIVCT-EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGE-DGTAPFKE---SVKGVSSVMCMVGDEASG 204 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d-~~~~~~~~---s~~G~~~V~~la~s~dg~ 204 (1115)
+...+..++.+ +++++| |.|+++++|++.++..... +...... .+...+.. ..+ ...|.+++|+|+|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~-----l~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-----LSDDSAANKDPENLNTSSSPSS-DLYIRSVCFSPDGK 136 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEE-----ECC-----------------CC-CCBEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEE-----ecCccccccccccccccccCCC-ceeEEEEEECCCCC
Confidence 44455566666 455555 7899999999998876542 1111000 00000000 011 34599999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcc
Q 001245 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEER 283 (1115)
Q Consensus 205 ~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~ 283 (1115)
+||||+.||+|++||+.++ +....+++|.+.|++++|+|+|+ |+|||.|++|++||+.++++...+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----- 203 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENR--------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----- 203 (393)
T ss_dssp EEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----
T ss_pred EEEEEcCCCeEEEEECCCC--------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----
Confidence 9999999999999999863 34678899999999999999997 899999999999999887554211
Q ss_pred eeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEecc
Q 001245 284 HTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1115)
Q Consensus 284 ~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s 361 (1115)
. + ...+.++++.+ ++..+++++ |++|+|||+++++++..+....
T Consensus 204 --------------~-~----------~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~--------- 249 (393)
T 1erj_A 204 --------------S-I----------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN--------- 249 (393)
T ss_dssp --------------E-C----------SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------
T ss_pred --------------E-c----------CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccc---------
Confidence 0 1 13466777777 677787776 7899999999998776552100
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCC
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANG 440 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~Dg 440 (1115)
....+|...|.+++|++||. |++|+.|+
T Consensus 250 ---------------------------------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 250 ---------------------------------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp ------------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ---------------------------------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 01235677899999999997 89999999
Q ss_pred eEEEEcC-C------------CCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEE
Q 001245 441 LLLQWDP-N------------GNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (1115)
Q Consensus 441 tIklWD~-t------------G~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sv 504 (1115)
+|++||+ + +.+..++.+|...|.+++ ++|++|++|+.||+|++||+. |+++..+.+|.+.|.++
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 9999998 3 356788999999999999 689999999999999999987 88999999999999999
Q ss_pred Ee--------cCCEEEeecCCCceEEeeecCC
Q 001245 505 AV--------GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 505 a~--------dg~~laSgS~DgtIRlWdl~~p 528 (1115)
++ ++++++|||.|++||+|++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 85 3678999999999999998653
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=319.56 Aligned_cols=283 Identities=16% Similarity=0.179 Sum_probs=214.9
Q ss_pred eeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe
Q 001245 134 FLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS 210 (1115)
.+..|+.+ ++++++ +.|++|||||++++..... .....+| ...|.+++|+|+|++||||+
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h-~~~v~~~~~sp~g~~l~s~s 80 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGH-QRTVRKVAWSPCGNYLASAS 80 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----------------EEECSSC-SSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----------------eeecccc-CCcEEEEEECCCCCEEEEEE
Confidence 34556666 444444 6899999999987643211 0011245 78999999999999999999
Q ss_pred CCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 211 ~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
.|++|++|++..+. .+...++++|.++|++|+|+|+|+ |+|||.|++|++||+.+.....
T Consensus 81 ~D~~v~iw~~~~~~------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~------------- 141 (345)
T 3fm0_A 81 FDATTCIWKKNQDD------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE------------- 141 (345)
T ss_dssp TTSCEEEEEECCC-------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE-------------
T ss_pred CCCcEEEEEccCCC------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE-------------
Confidence 99999999987632 234668899999999999999998 7999999999999997643210
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~ 368 (1115)
....+.+|. ..+.++++++++..+++++ |++|+|||+.+++.....
T Consensus 142 ---~~~~~~~h~----------~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~-------------------- 188 (345)
T 3fm0_A 142 ---CVSVLNSHT----------QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA-------------------- 188 (345)
T ss_dssp ---EEEEECCCC----------SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE--------------------
T ss_pred ---EEEEecCcC----------CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE--------------------
Confidence 001123444 6788999999998888876 689999997665422110
Q ss_pred cccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC
Q 001245 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP 447 (1115)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~ 447 (1115)
.+.+|...|.+++|+|+|. |++|+.|++|++||.
T Consensus 189 ---------------------------------------------~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 189 ---------------------------------------------TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ---------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ---------------------------------------------EecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 1345667889999999997 899999999999995
Q ss_pred -C-C--------------CeeEEeec-CCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cc---------ccccccccc
Q 001245 448 -N-G--------------NRLQDFQY-LPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN---------LLGGWVAHS 498 (1115)
Q Consensus 448 -t-G--------------~~l~tl~g-H~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~---------ll~~l~gH~ 498 (1115)
. + +++.++.+ |...|++++ ++|..|++|+.|++|++||.+ +. ....+.+|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 303 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence 2 1 35666666 888999999 689999999999999999975 21 122356999
Q ss_pred CCEEEEEe--cC-CEEEeecCCCceEEeeecCCCC
Q 001245 499 SPVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 499 ~~V~sva~--dg-~~laSgS~DgtIRlWdl~~p~p 530 (1115)
+.|++|++ ++ .+|+|||.||+|++|++.++.+
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 99999996 44 5899999999999999987543
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.3e-33 Score=309.81 Aligned_cols=271 Identities=16% Similarity=0.152 Sum_probs=218.1
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.| ...|.+++|+|++.+|+||+.||+|++||+.++ ..+..+++|..+|.+++|+|+++ |++||.|++||+
T Consensus 11 ~h-~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 11 NR-SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp EE-CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 56 889999999999999999999999999999873 35678899999999999999998 799999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc-cE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-EL 344 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg-~l 344 (1115)
||++++++.. .+.+|. ..+.++++++++..+++++ |++|+|||++++ .+
T Consensus 82 wd~~~~~~~~-------------------~~~~h~----------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 132 (304)
T 2ynn_A 82 FNYNTGEKVV-------------------DFEAHP----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (304)
T ss_dssp EETTTCCEEE-------------------EEECCS----------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred EECCCCcEEE-------------------EEeCCC----------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch
Confidence 9998876542 234454 6788999999999998876 689999999988 45
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEeccc-----cc-cc
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG-----GF-GD 417 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g-----~l-~~ 417 (1115)
.+++.+|...+.++.|+|. ++..+++|+.|+ ++.|+... .+ .+
T Consensus 133 ~~~~~~h~~~v~~v~~~p~------------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~ 182 (304)
T 2ynn_A 133 EQTFEGHEHFVMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (304)
T ss_dssp EEEECCCCSCEEEEEECTT------------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred hhhhcccCCcEEEEEECCC------------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccC
Confidence 5677777766555555542 223455555554 55555421 11 24
Q ss_pred CCCceEEEEEcC--CCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccc
Q 001245 418 DNRRTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNL 490 (1115)
Q Consensus 418 h~~~V~aVa~S~--Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~l 490 (1115)
+...+..+.+++ ++. |++|+.|++|++||+ +++++.++.+|...|.+++ |++.+|+||+.||+|++||+. +++
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 556788888875 554 899999999999999 8999999999999999998 789999999999999999987 889
Q ss_pred ccccccccCCEEEEEe--cCC--EEEeecCCCceEEeeecC
Q 001245 491 LGGWVAHSSPVIKMAV--GAG--YIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~--dg~--~laSgS~DgtIRlWdl~~ 527 (1115)
++++.+|.+.|+++++ +|+ ++++|+.| .+.+|++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred eeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999999999999984 443 57777654 577888753
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.4e-34 Score=328.80 Aligned_cols=278 Identities=16% Similarity=0.208 Sum_probs=214.0
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| .++|.|++|+|++++|+|||.||+||+||+.++ +....+++|...|.+++|+|+|+ |++|+.|++|++
T Consensus 64 gH-~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 64 GH-SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CC-SSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred cc-ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 56 889999999999999999999999999999863 34678899999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeec-CCeEEEEEcCCccE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
|++.+....... . .....+.+|. ..+.++++.++ +..+++++ |++|++||++++++
T Consensus 135 w~~~~~~~~~~~----~--------~~~~~~~gh~----------~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~ 192 (380)
T 3iz6_a 135 FNLSSQADRDGN----M--------PVSRVLTGHK----------GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR 192 (380)
T ss_dssp EECCCCSSCCCS----S--------TTCCBCCCCS----------SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE
T ss_pred EECCCCccccCC----c--------cceeeccCCC----------cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE
Confidence 999763211000 0 0001123444 33334444443 34566655 78999999999999
Q ss_pred EEEEec-----CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeec-cccceEEeccC-cEEEEecc-----
Q 001245 345 LKVFNI-----DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAAD-AVRRVAAK----- 412 (1115)
Q Consensus 345 l~tl~~-----~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~-~~~~~~~Gs~d-~v~~~~~~----- 412 (1115)
+.++.. |...+ ..+.+.+ ++..+++|+.| .++.|+..
T Consensus 193 ~~~~~~~~~~~h~~~v-------------------------------~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 193 ISIFGSEFPSGHTADV-------------------------------LSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp EEEECCCSSSSCCSCE-------------------------------EEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred EEEeecccCCCCccCe-------------------------------EEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 888732 22111 2233333 34566777765 46777653
Q ss_pred -cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCC-------cEEEEE--ecCCEEEeeecccE
Q 001245 413 -GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-------AVQCLC--TFGSQIWVGYMNGI 480 (1115)
Q Consensus 413 -g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~-------~V~sla--~dG~~LaSGs~DGt 480 (1115)
..+.+|...|.+++++|||. ++||+.|++|++||+ +|++++.+..|.. .|++++ ++|++|++|+.||+
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 24567999999999999987 899999999999999 8999988876543 378888 78999999999999
Q ss_pred EEEEeCC-Ccccccc----ccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 481 VQVLDLE-GNLLGGW----VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 481 IrlWD~~-G~ll~~l----~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
|++||+. ++.+..+ .+|.+.|.++++ ||++|+|||.|++|++|++..
T Consensus 322 i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 9999986 6666555 789999999985 899999999999999999865
No 19
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-32 Score=315.58 Aligned_cols=276 Identities=15% Similarity=0.192 Sum_probs=221.5
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| .++|+|++|+|++++|||||.||+|++||..++ +....+..|...|.+++|+|+|. |++|+.|++|++
T Consensus 62 gH-~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 62 GH-GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred CC-CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 56 889999999999999999999999999998763 34567889999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
|++......... .. ...+.+|. ..+.++++.+++..+++++ |++|+|||+.+++++
T Consensus 133 ~~~~~~~~~~~~----~~---------~~~~~~h~----------~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 133 YPLTFDKNENMA----AK---------KKSVAMHT----------NYLSACSFTNSDMQILTASGDGTCALWDVESGQLL 189 (354)
T ss_dssp EECCCCTTCCSG----GG---------CEEEEECS----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEecccccccc----cc---------ceeeeccC----------CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence 998653211000 00 01122343 6688888998888888775 789999999999999
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCC
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDN 419 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~ 419 (1115)
++|.+|...+..+.+++.. ++..+++|+.| .++.|+.. ..+.+|.
T Consensus 190 ~~~~~h~~~v~~~~~~~~~-----------------------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~ 240 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSE-----------------------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240 (354)
T ss_dssp EEEECCSSCEEEEEECCCS-----------------------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred EEEcCCCCCeEEEEEEeCC-----------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 9998877665555544321 22345566554 46677653 2456788
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC--CCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccc
Q 001245 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL--PFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG 492 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH--~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~ 492 (1115)
..|.+++++|++. +++|+.|++|++||+ +++++..+..+ ...+.+++ ++|++|++|+.|++|++||+. |+.+.
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence 9999999999987 799999999999999 67777776654 34688888 689999999999999999985 88899
Q ss_pred ccccccCCEEEEEe--cCCEEEeecCCCceEEee
Q 001245 493 GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 493 ~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWd 524 (1115)
.+.+|.+.|+++++ ||++|+|||.|++|++|+
T Consensus 321 ~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999985 889999999999999996
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-33 Score=312.75 Aligned_cols=288 Identities=13% Similarity=0.127 Sum_probs=206.9
Q ss_pred cceeeEEEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 131 IGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 131 ~~~~l~~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
+...+..++.+...|.+ +.|++|++||+.++..... ..+....| ..+|.+++|+|++++||||
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~---------------~~~~~~~h-~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI---------------DVLDETAH-KKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE---------------EEECTTCC-CSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE---------------EEEecCCc-cCCEEEEEECCCCCEEEEE
Confidence 34456677777664444 6899999999986532110 00101126 7799999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
+.|++|++||+..... ..........+++|.++|++|+|+|+|+ |+|||.|++|++||+.......
T Consensus 77 s~D~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------------ 143 (330)
T 2hes_X 77 SFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------------ 143 (330)
T ss_dssp ETTSCEEEEEC--------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------------
T ss_pred eCCCcEEEEEcccCcC-ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------------
Confidence 9999999999864210 0011234567899999999999999998 7999999999999995321100
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc--cEEEEEecCCceeeEEeccCCCC
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg--~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
.....+.+|. ..+.++++++++..|++++ |++|+|||+.++ +++.+
T Consensus 144 ---~~~~~~~~h~----------~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~------------------ 192 (330)
T 2hes_X 144 ---ECISVLQEHS----------QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV------------------ 192 (330)
T ss_dssp ---EEEEEECCCS----------SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE------------------
T ss_pred ---EEEEEeccCC----------CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE------------------
Confidence 0011234454 6788999999999999887 789999997654 22222
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC--Cc-EEEEeCCCeE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID--GM-IWTGGANGLL 442 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D--g~-laSGS~DgtI 442 (1115)
+.+|...|.+++|+|+ +. |++|+.|++|
T Consensus 193 -------------------------------------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 193 -------------------------------------------------LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp -------------------------------------------------ECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred -------------------------------------------------ccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 3345667788888887 54 8999999999
Q ss_pred EEEcC-CC--------CeeEEeec-CCCcEEEEEe-cCCEEEeeecccEEEEEeCC-C--ccc-cccccccC-CEEEEEe
Q 001245 443 LQWDP-NG--------NRLQDFQY-LPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-G--NLL-GGWVAHSS-PVIKMAV 506 (1115)
Q Consensus 443 klWD~-tG--------~~l~tl~g-H~~~V~sla~-dG~~LaSGs~DGtIrlWD~~-G--~ll-~~l~gH~~-~V~sva~ 506 (1115)
++||+ ++ .++..+.+ |...|++++. ++.+|++|+.||+|+|||.. + +++ ..+.+|.. .|.++++
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~ 303 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKW 303 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEE
Confidence 99998 43 45666765 9999999994 46699999999999999986 4 233 34578987 8999985
Q ss_pred ----cCCEEEeecCCCceEEeeecC
Q 001245 507 ----GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 507 ----dg~~laSgS~DgtIRlWdl~~ 527 (1115)
++++|+|||.|++||+|++..
T Consensus 304 ~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 304 LELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp C-----CCEEEEETTSEEEEEEC--
T ss_pred ecCCCceEEEEecCCCcEEEEEecc
Confidence 578999999999999999864
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-32 Score=310.12 Aligned_cols=279 Identities=18% Similarity=0.223 Sum_probs=218.4
Q ss_pred eccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg-~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
+| .++|.+++|+|++ ++|+|||.|++|++|++.+... .....+.+++||..+|++++|+|+|+ |+|||.|++||
T Consensus 15 gH-~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 15 GH-NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp CC-SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---EEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cc-cceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---cccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 56 8899999999964 8999999999999999864211 01123567899999999999999998 78999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
+||+.++++.. .+.+|. ..+.++++++++..+++++ |++|+|||++ +++
T Consensus 91 ~wd~~~~~~~~-------------------~~~~h~----------~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~ 140 (319)
T 3frx_A 91 LWDVATGETYQ-------------------RFVGHK----------SDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQC 140 (319)
T ss_dssp EEETTTTEEEE-------------------EEECCS----------SCEEEEEECTTSCEEEEEETTSCEEEEETT-SCE
T ss_pred EEECCCCCeeE-------------------EEccCC----------CcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCe
Confidence 99998875431 234454 6788999999999998876 7899999986 567
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccC
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDD 418 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h 418 (1115)
+.++.+|...+..+.+.+.... ..++..+++++.| .++.|+.. ..+.+|
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~-------------------------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKA-------------------------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp EEEECCCSSCEEEEEECCC-------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEeccCCcEEEEEEccCCCC-------------------------CCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 7788777766666666553211 1122345555555 46777653 346789
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccc
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~ 493 (1115)
...|.+++++|||. |++|+.||+|++||+ +++++.++..| ..|.+++ |+|.+|++++.++ |++|+++ +.++..
T Consensus 196 ~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~ 273 (319)
T 3frx_A 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDD 273 (319)
T ss_dssp CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeec
Confidence 99999999999997 799999999999999 78899998765 6899998 7899999988665 9999987 333333
Q ss_pred c--------ccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 494 W--------VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 494 l--------~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+ .+|...|.++++ ||++|++|+.|++||+||+.+
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 3 356778999985 899999999999999999875
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-32 Score=320.25 Aligned_cols=289 Identities=14% Similarity=0.141 Sum_probs=228.0
Q ss_pred ccceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE
Q 001245 130 QIGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 130 ~~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L 206 (1115)
.+...+..++.+ ++.+++ +.|++|+|||+.++..... ..+| ..+|.|++|+|+|++|
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h-~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT-------------------LKGH-TDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE-------------------ECCC-SSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-------------------Eecc-CCcEEEEEEcCCCCEE
Confidence 345567777777 334444 5899999999998876653 2256 7899999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+||+.||+|++||+.++ +.+.++.+|...|++++|+|+|. |+|||.|++|++||+.++.+..+
T Consensus 166 ~sgs~D~~i~iwd~~~~--------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~-------- 229 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGF--------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-------- 229 (410)
T ss_dssp EEEETTSCCCEEETTSS--------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE--------
T ss_pred EEEeCCCeEEEEeCCCC--------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE--------
Confidence 99999999999999863 34677899999999999999997 79999999999999988765421
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
+.+|. ..+.++++++++..+++++ |++|++||+.++++...+..|...+.++.+++..
T Consensus 230 -----------~~~h~----------~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 288 (410)
T 1vyh_C 230 -----------FTGHR----------EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288 (410)
T ss_dssp -----------EECCS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred -----------EeCCC----------ccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence 23344 5678888889999898876 7899999999999999999998888888888754
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-----cccccCCCceEEEEEcCCCc-EEEEe
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTGG 437 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-laSGS 437 (1115)
....-.... . .........+..+++|+.|+ ++.|+.. ..+.+|...|.+++++|+|. |++|+
T Consensus 289 ~~~~~~~~~-------~----~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 289 SYSSISEAT-------G----SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp GGGGGGGCC-------S----CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred cccchhhhc-------c----ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence 321110000 0 00001112345677787765 6677653 34568999999999999987 89999
Q ss_pred CCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 438 ~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
.|++|++||+ ++++++++.+|...|++++ ++|.+|++|+.||+|++||.
T Consensus 358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999 8999999999999999999 68999999999999999985
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.3e-32 Score=303.60 Aligned_cols=273 Identities=18% Similarity=0.244 Sum_probs=221.0
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++++++ +.|++|++||+.++..... ...| ..+|.+++|+|++++|+
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h-~~~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-------------------ISGH-KLGISDVAWSSDSNLLV 81 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------ECCC-SSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh-------------------hccC-CCceEEEEEcCCCCEEE
Confidence 44566777776 444444 5899999999988765542 1245 77899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
+|+.||+|++||+.++ +....+++|.+.|.+++|+|++. |++|+.|++|++||+.++++...
T Consensus 82 s~~~d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--------- 144 (312)
T 4ery_A 82 SASDDKTLKIWDVSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT--------- 144 (312)
T ss_dssp EEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE---------
T ss_pred EECCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE---------
Confidence 9999999999999863 34678899999999999999997 78999999999999987654311
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
+..|. ..+.++++++++..+++++ |++|++||+++++++..+..
T Consensus 145 ----------~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--------------- 189 (312)
T 4ery_A 145 ----------LPAHS----------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID--------------- 189 (312)
T ss_dssp ----------ECCCS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---------------
T ss_pred ----------ecCCC----------CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEec---------------
Confidence 22333 5678888998888888776 78999999998887655411
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQ 444 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIkl 444 (1115)
.+...+.+++++|++. +++|+.|++|++
T Consensus 190 ---------------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 218 (312)
T 4ery_A 190 ---------------------------------------------------DDNPPVSFVKFSPNGKYILAATLDNTLKL 218 (312)
T ss_dssp ---------------------------------------------------SSCCCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ---------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 1122456688899987 789999999999
Q ss_pred EcC-CCCeeEEeecCCCcEEEE----E-ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeec
Q 001245 445 WDP-NGNRLQDFQYLPFAVQCL----C-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLA 515 (1115)
Q Consensus 445 WD~-tG~~l~tl~gH~~~V~sl----a-~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS 515 (1115)
||+ ++++++.+.+|...+.++ . ++|.+|++|+.||+|++||+. ++++..+.+|.+.|+++++ ++.+++|++
T Consensus 219 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred EECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 999 899999999998754332 2 468999999999999999987 7889999999999999985 778999886
Q ss_pred --CCCceEEeeec
Q 001245 516 --NHGGIRGWNVT 526 (1115)
Q Consensus 516 --~DgtIRlWdl~ 526 (1115)
.|++|++|+..
T Consensus 299 ~~~d~~i~~W~~d 311 (312)
T 4ery_A 299 LENDKTIKLWKSD 311 (312)
T ss_dssp CTTTCCEEEEECC
T ss_pred ccCCccEEEecCC
Confidence 69999999863
No 24
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-32 Score=345.97 Aligned_cols=356 Identities=12% Similarity=0.109 Sum_probs=247.4
Q ss_pred ceeeEEEEEeCCe-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 132 GCFLRTIVCTEEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 132 ~~~l~~l~~~~~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
...+..|+.+.++ |.+ +.|++|+|||+.++.+... + .| ...|.|++|+|++.+|++|
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~-----------------~---~~-~~~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTT-----------------V---FV-PGKITSIDTDASLDWMLIG 116 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEE-----------------E---EC-SSCEEEEECCTTCSEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEE-----------------E---cC-CCCEEEEEECCCCCEEEEE
Confidence 3457778877666 444 6899999999998876543 1 23 5689999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcce-------EEeecCCCCEEEEEEeCCC--cEEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEV-------LSWQAHRGPVLSLCISSYG--DLWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~-------~~l~GH~~~V~sVafSpdG--~L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
+.||+|++||+.++.+. .+. + ..+++|.++|++|+|+|++ .|++|+.||+| +||+.++++...+..
T Consensus 117 s~dg~V~lwd~~~~~~~---~~~-i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~ 191 (902)
T 2oaj_A 117 LQNGSMIVYDIDRDQLS---SFK-LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIY 191 (902)
T ss_dssp ETTSCEEEEETTTTEEE---EEE-ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECC
T ss_pred cCCCcEEEEECCCCccc---cce-eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEec
Confidence 99999999999874210 000 0 2357899999999999974 37899999999 999988755422211
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEE--Ee---cC---
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV--FN---ID--- 351 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~t--l~---~~--- 351 (1115)
+... . ...+... ..........|.++++++++..+++++ |++|+|||+++|+++.. +. .+
T Consensus 192 ~~~~---------g-~~~~~~~-~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~ 260 (902)
T 2oaj_A 192 ELPP---------F-APGGDFS-EKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260 (902)
T ss_dssp CBCT---------T-CCCSTTC-CCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred ccCC---------c-CCCcccc-cccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence 0000 0 0000000 000000125689999999999999876 68999999999998764 21 11
Q ss_pred ----------CceeeEEeccCCC--C--c--c-c-c--------------------------------------------
Q 001245 352 ----------GQIENRVDMSLLP--D--F--A-M-E-------------------------------------------- 369 (1115)
Q Consensus 352 ----------~~~~~~v~~s~~~--~--~--~-~-~-------------------------------------------- 369 (1115)
...++.+.+++.. + . . . .
T Consensus 261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 340 (902)
T 2oaj_A 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP 340 (902)
T ss_dssp TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS
T ss_pred CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC
Confidence 1234455542210 0 0 0 0 0
Q ss_pred -------------------------------ccceEEEEecCCC---C-------------cc-----------------
Q 001245 370 -------------------------------DEFKTKIVTSSKK---D-------------KA----------------- 385 (1115)
Q Consensus 370 -------------------------------~~~~~~~~~~~~~---~-------------~~----------------- 385 (1115)
.+..+++|..... . ..
T Consensus 341 ~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 0011233321000 0 00
Q ss_pred -----------------ceeeeeeccccceEEeccCc-EEEEecc-cccc---------------cCCCceEEEEEcCCC
Q 001245 386 -----------------QSSFGFFQRSRNAIMGAADA-VRRVAAK-GGFG---------------DDNRRTEALTTSIDG 431 (1115)
Q Consensus 386 -----------------~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g~l~---------------~h~~~V~aVa~S~Dg 431 (1115)
...+.|++++..+++|+.|+ |++|+.. +.+. +|...|.+|+|+|||
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg 500 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET 500 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT
T ss_pred HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCC
Confidence 01234566777888888775 7777753 2221 677899999999999
Q ss_pred c-EEEEeCCCeEEEEcC-CC---------------------------------------------CeeEEeecCCCcEEE
Q 001245 432 M-IWTGGANGLLLQWDP-NG---------------------------------------------NRLQDFQYLPFAVQC 464 (1115)
Q Consensus 432 ~-laSGS~DgtIklWD~-tG---------------------------------------------~~l~tl~gH~~~V~s 464 (1115)
+ ||+|+.||+|+|||+ ++ +++.++.+|.+.|++
T Consensus 501 ~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~s 580 (902)
T 2oaj_A 501 LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSA 580 (902)
T ss_dssp TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEE
T ss_pred CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEE
Confidence 8 799999999999998 45 257889999999999
Q ss_pred EE--ecCCEEEeeecccEEEEEeCCCc-cc-----cccc-cccCCEEEEEec----------CCEEEeecCCCceEEeee
Q 001245 465 LC--TFGSQIWVGYMNGIVQVLDLEGN-LL-----GGWV-AHSSPVIKMAVG----------AGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 465 la--~dG~~LaSGs~DGtIrlWD~~G~-ll-----~~l~-gH~~~V~sva~d----------g~~laSgS~DgtIRlWdl 525 (1115)
|+ +|| +||+|+.|++|+|||+++. ++ +.+. +|++.|++|+|. +++|+||+.|++||+||+
T Consensus 581 vafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 581 INNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 99 789 9999999999999999853 22 4675 999999999876 469999999999999999
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-32 Score=312.98 Aligned_cols=313 Identities=13% Similarity=0.137 Sum_probs=230.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
+.|++|++||+.++..... .....| ...|.|++|+|++++|++|+.||+|++||+.+..
T Consensus 42 ~~d~~v~iw~~~~~~~~~~-----------------~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~--- 100 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKP-----------------IASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN--- 100 (416)
T ss_dssp CCCCCCEEEESSSGGGCSC-----------------SCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT---
T ss_pred CCCCeEEEEEccCCCCCcE-----------------EEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccc---
Confidence 4688999999998763321 111124 6789999999999999999999999999998511
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCC-Cc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecc
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG 305 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpd-G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~ 305 (1115)
...+....+.+|.++|++|+|+|+ +. |++|+.|++|++||+.+........ .. .....+.+|.
T Consensus 101 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~------~~~~~~~~~~---- 165 (416)
T 2pm9_A 101 -NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY----TP------LTPGQSMSSV---- 165 (416)
T ss_dssp -SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC----CC------BCCCCSCCSS----
T ss_pred -ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc----cc------cccccccCCC----
Confidence 112356788999999999999998 65 8999999999999998865110000 00 0000112232
Q ss_pred eeeeecCCeEEEEEeCC-CCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCC
Q 001245 306 FSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (1115)
Q Consensus 306 ~~~~~s~~v~~las~~~-~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (1115)
..+.+++++++ +..+++++ +++|++||+++++++..+..+... ....
T Consensus 166 ------~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-------------------------~~~~ 214 (416)
T 2pm9_A 166 ------DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN-------------------------SGIK 214 (416)
T ss_dssp ------CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS-------------------------SCCC
T ss_pred ------CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc-------------------------cccC
Confidence 56778888887 67777765 689999999999998888654210 0000
Q ss_pred ccceeeeeeccc-cceEEeccC----cEEEEecc------cccc-cCCCceEEEEEcC-CCc-EEEEeCCCeEEEEcC-C
Q 001245 384 KAQSSFGFFQRS-RNAIMGAAD----AVRRVAAK------GGFG-DDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-N 448 (1115)
Q Consensus 384 ~~~~~v~f~~~~-~~~~~Gs~d----~v~~~~~~------g~l~-~h~~~V~aVa~S~-Dg~-laSGS~DgtIklWD~-t 448 (1115)
.....+.|++++ ..+++++.+ .++.|+.. ..+. +|...|.+++++| ++. |++|+.|++|++||+ +
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence 112334555554 345666655 56777653 2345 7888999999998 776 899999999999999 8
Q ss_pred CCeeEEeecCCCcEEEEE--ecC-CEEEeeecccEEEEEeCC-Cccccccc-----------------------------
Q 001245 449 GNRLQDFQYLPFAVQCLC--TFG-SQIWVGYMNGIVQVLDLE-GNLLGGWV----------------------------- 495 (1115)
Q Consensus 449 G~~l~tl~gH~~~V~sla--~dG-~~LaSGs~DGtIrlWD~~-G~ll~~l~----------------------------- 495 (1115)
++++.++.+|...|++++ ++| .+|++|+.||+|++||+. +.......
T Consensus 295 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (416)
T 2pm9_A 295 AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVF 374 (416)
T ss_dssp CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSS
T ss_pred CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccc
Confidence 999999999999999999 678 899999999999999986 33222221
Q ss_pred ------cccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 496 ------AHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 496 ------gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.|..+|.+++ +||++|++++.|++|+||++.+
T Consensus 375 ~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 375 HLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 1667776655 5899999999999999999876
No 26
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-31 Score=302.72 Aligned_cols=285 Identities=19% Similarity=0.148 Sum_probs=212.6
Q ss_pred eccCCceEEEEE-----cC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeC
Q 001245 188 VKGVSSVMCMVG-----DE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSE 260 (1115)
Q Consensus 188 ~~G~~~V~~la~-----s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~ 260 (1115)
+| ..+|.|++| ++ ++++|+|||.|++||+||+..+... .........+.||.++|++|+|+|++. |+|||.
T Consensus 19 gH-~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~-~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 19 GH-SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN-GYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp CC-SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS-SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred cc-hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc-cccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 56 889999999 76 8999999999999999999753210 001123567899999999999999998 789999
Q ss_pred CCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEc
Q 001245 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDA 339 (1115)
Q Consensus 261 DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~ 339 (1115)
|++||+||+.++++.. .+.+|. ..+.++++++++..+++++ |++|+|||+
T Consensus 97 D~~v~lwd~~~~~~~~-------------------~~~~h~----------~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYK-------------------RFVGHQ----------SEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp TSEEEEEETTSSCEEE-------------------EEECCC----------SCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred CCcEEEEECCCCcEEE-------------------EEcCCC----------CcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 9999999998865431 124454 6788999999999998876 789999999
Q ss_pred CCccEEEEEe---cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEeccc--
Q 001245 340 RTRELLKVFN---IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKG-- 413 (1115)
Q Consensus 340 ~tg~ll~tl~---~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~g-- 413 (1115)
. +.....+. .+...+..+.+++..... ..+.+.+..+++++.| .++.|+..+
T Consensus 148 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 205 (343)
T 2xzm_R 148 L-GECKFSSAEKENHSDWVSCVRYSPIMKSA---------------------NKVQPFAPYFASVGWDGRLKVWNTNFQI 205 (343)
T ss_dssp S-SCEEEECCTTTSCSSCEEEEEECCCCCSC---------------------SCCCSSCCEEEEEETTSEEEEEETTTEE
T ss_pred c-CCceeeeecccCCCceeeeeeeccccccc---------------------cccCCCCCEEEEEcCCCEEEEEcCCCce
Confidence 8 44443332 344455666666532210 0112223455666655 466676432
Q ss_pred --ccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CC-CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 414 --GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG-NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 414 --~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG-~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
.+.+|...|.+++++|||. |++|+.|++|++||+ +. .+...+ .|...|++++ |+|.+|++| .|+.|++||+
T Consensus 206 ~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~ 283 (343)
T 2xzm_R 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNL 283 (343)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEES
T ss_pred eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEe
Confidence 4567889999999999997 899999999999999 54 445554 3556799999 678877755 5778999998
Q ss_pred C-Ccccc--cc-----------ccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 487 E-GNLLG--GW-----------VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 487 ~-G~ll~--~l-----------~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
. ++... .+ .+|...|+++++ +|++|++|+.||+||+|++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 284 MTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 6 44332 33 389999999985 789999999999999999865
No 27
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-31 Score=297.88 Aligned_cols=257 Identities=15% Similarity=0.138 Sum_probs=209.2
Q ss_pred eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001245 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA 222 (1115)
Q Consensus 144 ~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~ 222 (1115)
.|.+ |.|++|||||+.++..... +...+| ..+|.++++++++.+++||+.|++||+||+.+
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh-~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGH-QLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 3444 6899999999876543211 112245 78999999999999999999999999999987
Q ss_pred CCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccc
Q 001245 223 RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (1115)
Q Consensus 223 ~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~ 301 (1115)
+ +.+..+.+|...|.+++|+|+|+ |++|+.|++|++|++++++.... +..|.
T Consensus 112 ~--------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~-------------------~~~~~ 164 (321)
T 3ow8_A 112 G--------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS-------------------LDTRG 164 (321)
T ss_dssp T--------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE-------------------EECSS
T ss_pred C--------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE-------------------ecCCC
Confidence 3 34677889999999999999998 78999999999999988654321 12222
Q ss_pred eecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecC
Q 001245 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (1115)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~ 380 (1115)
..+.++++++++..+++++ |++|+|||++++++++++.+|...+..
T Consensus 165 ----------~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~----------------------- 211 (321)
T 3ow8_A 165 ----------KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS----------------------- 211 (321)
T ss_dssp ----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCE-----------------------
T ss_pred ----------ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeE-----------------------
Confidence 4578889999999998876 789999999999999988766544333
Q ss_pred CCCccceeeeeeccccceEEeccCc-EEEEecc-----cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCee
Q 001245 381 KKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRL 452 (1115)
Q Consensus 381 ~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l 452 (1115)
+.|++++..+++|+.|+ ++.|+.. ..+.+|...|.+++|+|++. |++|+.|++|++||+ +++++
T Consensus 212 --------l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 212 --------LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp --------EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred --------EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 35555666667776664 6677653 35678999999999999987 899999999999999 89999
Q ss_pred EEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 453 QDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 453 ~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
+++.+|...|++|+ ++|++|++|+.||+|+|||.
T Consensus 284 ~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999 68999999999999999995
No 28
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-31 Score=308.94 Aligned_cols=284 Identities=9% Similarity=0.070 Sum_probs=212.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCCCCCCCCCc--ceEEeecCCCCEEEEEEeCCC---------
Q 001245 192 SSVMCMVGDEASGVVWSGHRDG-------RIMCWKMNARLLDSDDGFG--EVLSWQAHRGPVLSLCISSYG--------- 253 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~Dg-------tIrlWdl~~~~~~~~~~~~--~~~~l~GH~~~V~sVafSpdG--------- 253 (1115)
-||+|++|+|||++|+||+.|. +||+|+++.+.......+. ....|.+|...|.+++++.+.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 5899999999999999998654 5999999763210000000 123577999999999887641
Q ss_pred c-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--
Q 001245 254 D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-- 330 (1115)
Q Consensus 254 ~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-- 330 (1115)
. |++|+.|++||+|++++....+ .... ....... ..+...++++++++++..++.++
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~---------~~~~-~~~~~~~----------~~~~~~~~~v~fSpDg~~la~as~~ 154 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQL---------EFLT-SVDFDAS----------TNADDYTKLVYISREGTVAAIASSK 154 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEE---------EEEE-EECSSCC----------CCTTCCEEEEEECTTSSCEEEEESC
T ss_pred cEEEEecCCCcEEEEEecCCCceE---------EEee-eeceeec----------CCcccCEEEEEEcCCCCEEEEEECC
Confidence 1 4456778999999986643221 1000 0000000 11224588999999998876443
Q ss_pred -CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEE
Q 001245 331 -FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRV 409 (1115)
Q Consensus 331 -d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~ 409 (1115)
|++|+|||+.+++++..+.+++.+ ..+.|+++++.+++++.+++++|
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~~~~~V--------------------------------~~v~fspdg~~l~s~s~~~~~~~ 202 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIETRGEV--------------------------------KDLHFSTDGKVVAYITGSSLEVI 202 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEECSSCC--------------------------------CEEEECTTSSEEEEECSSCEEEE
T ss_pred CCCEEEEeECCCCcEEEEeCCCCce--------------------------------EEEEEccCCceEEeccceeEEEE
Confidence 589999999999998887644332 24567777777888888888887
Q ss_pred ecc-c------ccccCCCceEEEEEcCCCc-EEEEeCCC----eEEEEcC-CCC----eeEEeecCCCcEEEEE--ecCC
Q 001245 410 AAK-G------GFGDDNRRTEALTTSIDGM-IWTGGANG----LLLQWDP-NGN----RLQDFQYLPFAVQCLC--TFGS 470 (1115)
Q Consensus 410 ~~~-g------~l~~h~~~V~aVa~S~Dg~-laSGS~Dg----tIklWD~-tG~----~l~tl~gH~~~V~sla--~dG~ 470 (1115)
+.. + ...+|...|.+++|+||+. +++++.|+ ++++||+ .+. ..+.+.+|...|++|+ |||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 203 STVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE 282 (365)
T ss_dssp ETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred EeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence 652 2 2345778899999999998 78888887 7899998 443 2467889999999999 7999
Q ss_pred EEEeeecccEEEEEeCC-Cccccc-cccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 471 QIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 471 ~LaSGs~DGtIrlWD~~-G~ll~~-l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+||+|+.|++|+|||++ ++++.+ +.||.+.|++|+| ||++|||||.|+|||||++..
T Consensus 283 ~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999987 888877 5899999999996 899999999999999999954
No 29
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-30 Score=344.46 Aligned_cols=370 Identities=15% Similarity=0.128 Sum_probs=246.1
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++++++ +.|++|++||+.++..... ...| .++|.|++|+|+|++||
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h-~~~v~~~~~s~~~~~l~ 673 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-------------------IKAH-EDEVLCCAFSSDDSYIA 673 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------ECCC-SSCEEEEEECTTSSEEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-------------------eccC-CCCEEEEEEecCCCEEE
Confidence 34556666666 445554 6899999999998876653 1245 78999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc---EEEEeCCCcEEEEeCCCcceeeccCC----
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD---LWSGSEGGGIKIWPWEAIEKALSLKP---- 280 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~---L~SgS~DgtIrvWdl~t~~~~l~~~~---- 280 (1115)
||+.||+|++||+.++ +.+.++.+|.++|++++|+|++. +++|+.|++|++||+.++.+...+..
T Consensus 674 s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 674 TCSADKKVKIWDSATG--------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp EEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred EEeCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence 9999999999999874 45778999999999999999653 68999999999999998765443322
Q ss_pred --------CcceeEEEEeeeeeeee---cccc-----------------------eecceee------------------
Q 001245 281 --------EERHTAALIVERSYIDL---RSHL-----------------------SVNGFSS------------------ 308 (1115)
Q Consensus 281 --------~~~~~~a~~~~~~~~~l---~~h~-----------------------~~~~~~~------------------ 308 (1115)
+...++....+.. +.+ .... .+..+++
T Consensus 746 v~~~~~sp~~~~l~s~s~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 746 VNHCRFSPDDELLASCSADGT-LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp EEEEEECSSTTEEEEEESSSE-EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCe-EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 2222222221111 111 0000 0000000
Q ss_pred -------------eecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCcc--ccccc
Q 001245 309 -------------ILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA--MEDEF 372 (1115)
Q Consensus 309 -------------~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~--~~~~~ 372 (1115)
.....+.++++++++..+++++ +++|++||+.++..+..+.+|...+..+.+++..... ...+.
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg 904 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence 1235677788888888888776 6889999999999999999888888888888865432 12223
Q ss_pred eEEEEecC------------------------------------------------------------------------
Q 001245 373 KTKIVTSS------------------------------------------------------------------------ 380 (1115)
Q Consensus 373 ~~~~~~~~------------------------------------------------------------------------ 380 (1115)
.+++|...
T Consensus 905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~ 984 (1249)
T 3sfz_A 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984 (1249)
T ss_dssp CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence 33343210
Q ss_pred ----------------CCCccceeeeeeccccceEEeccCc-EEEEecc-c---ccccCCCceEEEEEcCCCcEEEEeCC
Q 001245 381 ----------------KKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-G---GFGDDNRRTEALTTSIDGMIWTGGAN 439 (1115)
Q Consensus 381 ----------------~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g---~l~~h~~~V~aVa~S~Dg~laSGS~D 439 (1115)
.+......+.|++++..+++++.|+ ++.|+.. + .+..|...|.++++++++.+++++.|
T Consensus 985 i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 1064 (1249)
T 3sfz_A 985 IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFD 1064 (1249)
T ss_dssp CEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESS
T ss_pred EEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECC
Confidence 0011123445555555555555443 4444432 1 23345566666667776666677777
Q ss_pred CeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEe
Q 001245 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFT 513 (1115)
Q Consensus 440 gtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laS 513 (1115)
++|++||+ +|++++++.+|...|++++ ++|++|++|+.||+|++||+. ++++..+.+|.+.|+++++ +|++++|
T Consensus 1065 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat 1144 (1249)
T 3sfz_A 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLAT 1144 (1249)
T ss_dssp SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEE
T ss_pred CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEE
Confidence 77777776 6677777777777777666 567777777777777777765 6666777777777777664 6667777
Q ss_pred ecCCCceEEeeecCCC
Q 001245 514 LANHGGIRGWNVTSPG 529 (1115)
Q Consensus 514 gS~DgtIRlWdl~~p~ 529 (1115)
|+.||+|++||+.++.
T Consensus 1145 ~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1145 GDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp EETTSCCCEEESSSSC
T ss_pred EeCCCEEEEEECCCCc
Confidence 7777777777766543
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-31 Score=302.84 Aligned_cols=330 Identities=12% Similarity=0.072 Sum_probs=235.2
Q ss_pred eeeEEEEEe-CCe-EEE--eCCCCEEEEeC----CCCcc------cccccccccccCCCCCCCCCceeeeccCCceEEEE
Q 001245 133 CFLRTIVCT-EEQ-LWA--GGENGLRVWNL----KELYD------ESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMV 198 (1115)
Q Consensus 133 ~~l~~l~~~-~~~-l~a--g~D~tvrvWdl----~tg~~------~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la 198 (1115)
..+..++.+ ++. +++ +.|++|++||+ .++.. ...+ ..... .. .....| .+.|.|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~--~~~~~~-~~~v~~~~ 115 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL-----RHPFA--LS--ASSGKT-TNQVTCLA 115 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE-----ECCCC--CC---------CBCEEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc-----ccccc--cc--ccccCC-CCceEEEE
Confidence 344455655 333 444 57899999999 87763 2110 00000 00 000124 56899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeec
Q 001245 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALS 277 (1115)
Q Consensus 199 ~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~ 277 (1115)
|+|++++|++|+.||+|++||..+ +....+.+|.++|++++|+|+++ |++++.|++|++||+.+++....
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWNKTG---------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTS---------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCC---------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 999999999999999999999553 45678899999999999999998 78999999999999988765433
Q ss_pred cCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeE
Q 001245 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENR 357 (1115)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~ 357 (1115)
+.......... ....+. .....+.++++.+++..++.+.++.|++||+.+++.+..+..+...+..
T Consensus 187 ~~~~~~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 187 FELKETGGSSI-------NAENHS-------GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV 252 (425)
T ss_dssp ECCC-----------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred eeccccCccce-------eecccc-------CCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEE
Confidence 22111100000 000000 0001144556666655444555789999999999888777655444333
Q ss_pred EeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCCCceEEEEEcCCC
Q 001245 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDNRRTEALTTSIDG 431 (1115)
Q Consensus 358 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg 431 (1115)
+.|.+++..+++++.+ .++.|+.. ..+..|...|.++++++++
T Consensus 253 -------------------------------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 253 -------------------------------LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301 (425)
T ss_dssp -------------------------------EEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT
T ss_pred -------------------------------EEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC
Confidence 3445555556666654 46666642 2345688899999999999
Q ss_pred cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cc------------------
Q 001245 432 MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN------------------ 489 (1115)
Q Consensus 432 ~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~------------------ 489 (1115)
.+++++.|++|++||+ +++++..+..|...|.+++ ++|++|++|+.||+|++||+. ++
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLP 381 (425)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEE
T ss_pred EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCccc
Confidence 8899999999999999 8999999999999999998 689999999999999999987 66
Q ss_pred --cccccccccC--CEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 490 --LLGGWVAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 490 --ll~~l~gH~~--~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
++..+.+|.. .|.++++ ++++|++++.||+|++|++.
T Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 382 IPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred chhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7899999977 9999996 78899999999999999974
No 31
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5e-31 Score=293.90 Aligned_cols=254 Identities=12% Similarity=0.049 Sum_probs=186.0
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtI 264 (1115)
.| ..+|.+++|+++|++||||+.|++||+||+.++. .+...++.||.++|++|+|+++ |+ |+|||.|++|
T Consensus 7 ~h-~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 7 AH-NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp SC-SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred CC-cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 46 7899999999999999999999999999997521 1346789999999999999864 66 7999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEeec-CCeEEEEEcCC
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDART 341 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~s-d~tI~lWD~~t 341 (1115)
||||++++.... ...+.+|. ..+.+++++++ +..+++++ |++|++||+++
T Consensus 80 ~iWd~~~~~~~~-----------------~~~~~~h~----------~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 80 MIWKEENGRWSQ-----------------IAVHAVHS----------ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp EEEEBSSSCBCC-----------------CEEECCCS----------SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred EEEEcCCCceEE-----------------EEEeecCC----------CceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 999998753210 01123343 56888888886 67777765 78999999987
Q ss_pred ccE--EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC
Q 001245 342 REL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1115)
Q Consensus 342 g~l--l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~ 419 (1115)
+.. ...+.+|...++.+.+++..... .+.
T Consensus 133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~--------------------------------~~~----------------- 163 (297)
T 2pm7_B 133 NGTTSPIIIDAHAIGVNSASWAPATIEE--------------------------------DGE----------------- 163 (297)
T ss_dssp SSCBCCEEEECCSSCEEEEEECCCC-------------------------------------------------------
T ss_pred CCceeeeeeecccCccceEeecCCcccc--------------------------------ccc-----------------
Confidence 531 22333333333333333211000 000
Q ss_pred CceEEEEEcCCC-cEEEEeCCCeEEEEcC-CCC----eeEEeecCCCcEEEEE--ec---CCEEEeeecccEEEEEeCCC
Q 001245 420 RRTEALTTSIDG-MIWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLC--TF---GSQIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 420 ~~V~aVa~S~Dg-~laSGS~DgtIklWD~-tG~----~l~tl~gH~~~V~sla--~d---G~~LaSGs~DGtIrlWD~~G 488 (1115)
-...+++ .|++|+.|++|++||+ +++ ++.++.+|...|++|+ |+ +.+||||+.|++|+|||++.
T Consensus 164 -----~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 164 -----HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred -----CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 0001123 4899999999999999 665 6788999999999999 56 48999999999999999863
Q ss_pred -c--c-cccc--ccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCC
Q 001245 489 -N--L-LGGW--VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 489 -~--l-l~~l--~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~ 529 (1115)
. . ...+ .+|.+.|+++++ +|++|++++.|++|++|+....+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 1 1 1223 588999999985 78999999999999999986543
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=303.86 Aligned_cols=244 Identities=12% Similarity=0.156 Sum_probs=190.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC---CCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD---SDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~---~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvW 267 (1115)
...|.+++|+|||++|++|| |+++|+||....... .............|..+|++|+|+|++.|++||.||+||||
T Consensus 30 ~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELW 108 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred cCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEE
Confidence 45789999999999999988 788999974210000 00111112233457889999999999989999999999999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
|++++++.... ...+.+|. ..|.++++++++..|++++ |++|+|||+.++++++
T Consensus 109 d~~~~~~~~~~---------------~~~~~~H~----------~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 109 ELDENETLIVS---------------KFCKYEHD----------DIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS 163 (344)
T ss_dssp EECTTSSCEEE---------------EEEEECCS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred eccCCCceeEe---------------eccccCCC----------CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99887654211 11223555 6789999999999999986 6899999999998876
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
+|. +|...|.+++
T Consensus 164 ~~~-------------------------------------------------------------------~h~~~V~~~~ 176 (344)
T 4gqb_B 164 SYR-------------------------------------------------------------------AHAAQVTCVA 176 (344)
T ss_dssp EEC-------------------------------------------------------------------CCSSCEEEEE
T ss_pred EEc-------------------------------------------------------------------CcCCceEEEE
Confidence 653 3445677788
Q ss_pred EcCCCc--EEEEeCCCeEEEEcC-CCCeeEEee--cCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC-Cccccccccc
Q 001245 427 TSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ--YLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1115)
Q Consensus 427 ~S~Dg~--laSGS~DgtIklWD~-tG~~l~tl~--gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH 497 (1115)
+++++. ++||+.|++|++||+ +++++.++. .|...|++++ + ++.+|++|+.||+|+|||+. ++++.++.+|
T Consensus 177 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h 256 (344)
T 4gqb_B 177 ASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVH 256 (344)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECC
T ss_pred ecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCC
Confidence 888874 689999999999999 899988875 4556789988 4 46789999999999999987 8999999999
Q ss_pred cCCEEEEEe--cC-CEEEeecCCCceEEeeecC
Q 001245 498 SSPVIKMAV--GA-GYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 498 ~~~V~sva~--dg-~~laSgS~DgtIRlWdl~~ 527 (1115)
.+.|++|++ +| ++|+|||.|++||+||+.+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 999999996 55 5799999999999999875
No 33
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-30 Score=298.39 Aligned_cols=319 Identities=15% Similarity=0.152 Sum_probs=241.6
Q ss_pred CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 142 EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 142 ~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
+..|++ +.|++|++||+.++..... .++...+.+.++++++++||+|+.||+|++||+
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 126 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGSKM---------------------LKRADYTAVDTAKLQMRRFILGTTEGDIKVLDS 126 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETTTT---------------------SCSCCEEEEEEECSSSCEEEEEETTSCEEEECT
T ss_pred CCeEEEEEcCCcEEEEEecccceeeE---------------------EecCCceEEEEEecCCCEEEEEECCCCEEEEeC
Confidence 444555 5799999999988776543 111234556678999999999999999999999
Q ss_pred CCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc
Q 001245 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~ 299 (1115)
.++ +....+.+|.++|++|+|+|+|+ |++|+.|++|++||+.+++... .+.+
T Consensus 127 ~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-------------------~~~~ 179 (420)
T 3vl1_A 127 NFN--------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-------------------TLIG 179 (420)
T ss_dssp TSC--------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-------------------EEEC
T ss_pred CCc--------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-------------------EEcC
Confidence 863 33456689999999999999997 7999999999999998765431 1234
Q ss_pred cceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecC---CceeeEEeccCCCCccccccceEE
Q 001245 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNID---GQIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 300 h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~---~~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
|. ..+.++++++++..+++++ |++|++||++++++++++..+ ...+..+.+.+........
T Consensus 180 h~----------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----- 244 (420)
T 3vl1_A 180 HR----------ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHE----- 244 (420)
T ss_dssp CS----------SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGG-----
T ss_pred CC----------CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeee-----
Confidence 44 6788999999999888876 689999999999999998753 2334444444322211000
Q ss_pred EEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-c----c-cccCCCceEEEEEcCCCc--EEEEeCCCeEEEEc
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-G----G-FGDDNRRTEALTTSIDGM--IWTGGANGLLLQWD 446 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g----~-l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD 446 (1115)
........+.|++++..+++|+.++ ++.|+.. + . ...|...|.+++++|++. +++|+.||+|++||
T Consensus 245 -----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 245 -----ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp -----GCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred -----cccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 0112234667888888888887765 7777653 1 1 234778899999999985 79999999999999
Q ss_pred C-CCC-eeEEeec-CCCcEEEEE-ecCCEEEeeecccEEEEEeCCC----------ccccccccccCCEEEEEe--cCC-
Q 001245 447 P-NGN-RLQDFQY-LPFAVQCLC-TFGSQIWVGYMNGIVQVLDLEG----------NLLGGWVAHSSPVIKMAV--GAG- 509 (1115)
Q Consensus 447 ~-tG~-~l~tl~g-H~~~V~sla-~dG~~LaSGs~DGtIrlWD~~G----------~ll~~l~gH~~~V~sva~--dg~- 509 (1115)
+ +++ ++.++.+ |...|+++. ++|++|++|+.||+|++||+.. .....+.+|.+.|.++++ +++
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 399 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDES 399 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSS
T ss_pred cCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCC
Confidence 9 664 4788887 677899888 7899999999999999999752 223356789999999884 777
Q ss_pred --EEEeecCCCceEEeeecCC
Q 001245 510 --YIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 510 --~laSgS~DgtIRlWdl~~p 528 (1115)
.+++++.+|.+++|++..|
T Consensus 400 ~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 400 NGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp SCEEEEEETTTEEEEEESCC-
T ss_pred cceEEEEcCCceEEEEeccCC
Confidence 7888888999999998654
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.4e-30 Score=287.94 Aligned_cols=278 Identities=19% Similarity=0.199 Sum_probs=203.8
Q ss_pred eccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
+| .++|+||+|+|+ +++|||||.||+||+||+..+.. .......+++||.++|++++|+|+|+ |+||+.|++|+
T Consensus 36 GH-~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~---~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 36 GH-NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET---NYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp CC-SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS---CSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred Cc-cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc---ccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 56 899999999997 68999999999999999986432 11234567899999999999999998 78999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
+|+......... ...+ ...+......+.+..+++++ |+.+++||+.....
T Consensus 112 ~~~~~~~~~~~~-------------------~~~~----------~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 112 LWDLTTGTTTRR-------------------FVGH----------TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp EEETTTTEEEEE-------------------EECC----------SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEeecccceeee-------------------ecCC----------CCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence 999977543211 0111 13445566677777787765 68999999876654
Q ss_pred EEE-EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----ccccc
Q 001245 345 LKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGD 417 (1115)
Q Consensus 345 l~t-l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~ 417 (1115)
... +..+...+..+.+++.. ....+++++.| .++.|+.. ..+.+
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~-----------------------------~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~ 213 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNS-----------------------------SNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCS-----------------------------SSCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEeccccCcccceEEccCC-----------------------------CCcEEEEEcCCCEEEEEECCCCceeeEecC
Confidence 332 22333333333332211 11223444444 46666543 34567
Q ss_pred CCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEe-cCCEEEeeecccEEEEEeCC-Ccccc-
Q 001245 418 DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLG- 492 (1115)
Q Consensus 418 h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~-dG~~LaSGs~DGtIrlWD~~-G~ll~- 492 (1115)
|...|.+++++||+. |++|+.|++|++||+ +++++..+.+| ..|.+++. .+.++++++.|++|++||++ +.++.
T Consensus 214 h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 292 (340)
T 4aow_A 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDE 292 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEe
Confidence 899999999999987 789999999999999 78888888765 57888883 34566777789999999987 33333
Q ss_pred --------ccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 493 --------GWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 493 --------~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
...+|...|+++++ ||++|+|||.||+||+||+.++
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 34589999999985 7899999999999999999874
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-30 Score=311.86 Aligned_cols=335 Identities=10% Similarity=0.089 Sum_probs=245.5
Q ss_pred eeeEEEEEeCC---eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCC---ceEEEEEcCC-CC
Q 001245 133 CFLRTIVCTEE---QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS---SVMCMVGDEA-SG 204 (1115)
Q Consensus 133 ~~l~~l~~~~~---~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~---~V~~la~s~d-g~ 204 (1115)
..+..++.+.. .+.+ +.|++|++||+.++..... ...| .. +|.|++|+|+ ++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-------------------~~~~-~~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-------------------DRTH-HKQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-------------------ECSS-SCTTCCEEEEEECSTTCC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee-------------------eccc-CCCCceEEEEEECCCCCC
Confidence 34556666522 3444 6899999999988776542 1134 55 8999999999 99
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-e---cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccC
Q 001245 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-Q---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLK 279 (1115)
Q Consensus 205 ~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~---GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~ 279 (1115)
+|++|+.||+|++||+.++ +....+ . +|.++|++++|+ +++ |++++.|++|++||+.+++....+.
T Consensus 221 ~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSG--------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EEEEEETTCCEEEEETTTC--------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCC--------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 9999999999999999863 345667 6 999999999999 887 7899999999999998865542211
Q ss_pred CCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEE
Q 001245 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRV 358 (1115)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v 358 (1115)
.+. ......+..+++. ++..+++++ ++.|++||+.+++.+..+.+|...+..+
T Consensus 292 -------------------~~~------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~ 345 (615)
T 1pgu_A 292 -------------------LDK------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL 345 (615)
T ss_dssp -------------------CCT------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred -------------------CCC------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEE
Confidence 110 0001233444554 455666554 6899999999999999998877777777
Q ss_pred eccCCCCcccc------------------------------------ccceEEEEecCCC--------------------
Q 001245 359 DMSLLPDFAME------------------------------------DEFKTKIVTSSKK-------------------- 382 (1115)
Q Consensus 359 ~~s~~~~~~~~------------------------------------~~~~~~~~~~~~~-------------------- 382 (1115)
.+ +. ..... .+..+++|.....
T Consensus 346 ~~-~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 423 (615)
T 1pgu_A 346 TV-NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423 (615)
T ss_dssp ET-TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEE
T ss_pred Ee-cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEE
Confidence 66 43 11111 1122222211100
Q ss_pred ----------------------CccceeeeeeccccceEEecc--CcEEEEecc------cccccCCCceEEEEEcCCCc
Q 001245 383 ----------------------DKAQSSFGFFQRSRNAIMGAA--DAVRRVAAK------GGFGDDNRRTEALTTSIDGM 432 (1115)
Q Consensus 383 ----------------------~~~~~~v~f~~~~~~~~~Gs~--d~v~~~~~~------g~l~~h~~~V~aVa~S~Dg~ 432 (1115)
......+.|. +..++++.. +.++.|+.. ..+.+|...|.+++++|||.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 501 (615)
T 1pgu_A 424 TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 501 (615)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS
T ss_pred eCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC
Confidence 0001122222 445555554 456666653 34567888999999999997
Q ss_pred -EEEEeCCCeEEEEcC-CCCeeEEeec-CCCcEEEEE--e----------cCCEEEeeecccEEEEEeCC-C-ccccccc
Q 001245 433 -IWTGGANGLLLQWDP-NGNRLQDFQY-LPFAVQCLC--T----------FGSQIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (1115)
Q Consensus 433 -laSGS~DgtIklWD~-tG~~l~tl~g-H~~~V~sla--~----------dG~~LaSGs~DGtIrlWD~~-G-~ll~~l~ 495 (1115)
|++|+.||+|++||+ +++++.++.+ |...|++++ | +|++||+|+.||+|++||++ + +++..+.
T Consensus 502 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 581 (615)
T 1pgu_A 502 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN 581 (615)
T ss_dssp EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT
T ss_pred EEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh
Confidence 789999999999999 8999999988 999999999 6 89999999999999999987 4 7889999
Q ss_pred cccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 496 gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+|.+.|+++++ +|+ |+|++.|++|++|++.+
T Consensus 582 ~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 582 AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999984 788 99999999999999864
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.98 E-value=1.8e-30 Score=295.11 Aligned_cols=240 Identities=16% Similarity=0.225 Sum_probs=196.8
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| .++|.+++|+|++++|+||+.||+|++||+.++ +....+.+|...|.+++|+|+|+ |++|+.|++|++
T Consensus 53 gH-~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 53 GH-LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CC-SSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CC-CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 46 789999999999999999999999999999863 34677899999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLK 346 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~ 346 (1115)
|++.+.+.... ....+.+|. ..+.++.+.+++..+.++.|++|++||+.+++++.
T Consensus 124 w~~~~~~~~~~---------------~~~~~~~h~----------~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~ 178 (340)
T 1got_B 124 YNLKTREGNVR---------------VSRELAGHT----------GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178 (340)
T ss_dssp EETTTCSBSCE---------------EEEEEECCS----------SCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred EECccCCCcce---------------eEEEecCCC----------ccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEE
Confidence 99977432100 011233444 56777777776665545568999999999888765
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
++. +|...|.+++
T Consensus 179 ~~~-------------------------------------------------------------------~h~~~v~~~~ 191 (340)
T 1got_B 179 TFT-------------------------------------------------------------------GHTGDVMSLS 191 (340)
T ss_dssp EEC-------------------------------------------------------------------CCSSCEEEEE
T ss_pred EEc-------------------------------------------------------------------CCCCceEEEE
Confidence 542 3445677888
Q ss_pred EcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccccc--cccC
Q 001245 427 TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV--AHSS 499 (1115)
Q Consensus 427 ~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~--gH~~ 499 (1115)
++|++. +++|+.|++|++||+ ++++++++.+|...|++++ |+|++|++|+.||+|++||+. ++.+..+. .|..
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~ 271 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCccc
Confidence 999987 789999999999999 8999999999999999999 789999999999999999987 66655554 3445
Q ss_pred CEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 500 PVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 500 ~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.|.++++ +|+++++|+.|++|++||+.+.
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 7999885 7899999999999999998653
No 37
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=2e-30 Score=304.19 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=213.6
Q ss_pred eeeEEEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeC
Q 001245 133 CFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1115)
Q Consensus 133 ~~l~~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~ 211 (1115)
..+..++.++..+++ +.|++|++||+.++..... ..+| .++|.|+++ ++++|+||+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h-~~~v~~l~~--~~~~l~sg~~ 191 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI-------------------LTGH-TGSVLCLQY--DERVIITGSS 191 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE-------------------ECCC-SSCEEEEEC--CSSEEEEEET
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCC-CCcEEEEEE--CCCEEEEEcC
Confidence 345566666666665 5899999999998876542 2245 789999999 7889999999
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEee
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~ 291 (1115)
||+|++||+.++ +...++.+|.++|.+++|++ +.|++|+.||+|++||+.++....
T Consensus 192 dg~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~--------------- 247 (435)
T 1p22_A 192 DSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDIT--------------- 247 (435)
T ss_dssp TSCEEEEESSSC--------CEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCE---------------
T ss_pred CCeEEEEECCCC--------cEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCce---------------
Confidence 999999999874 35678899999999999985 368999999999999998754320
Q ss_pred eeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccc
Q 001245 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1115)
Q Consensus 292 ~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~ 370 (1115)
....+.+|. ..+.++++ ++..+++++ |++|++||++++++++++.++.
T Consensus 248 -~~~~~~~~~----------~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------ 296 (435)
T 1p22_A 248 -LRRVLVGHR----------AAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK------------------ 296 (435)
T ss_dssp -EEEEECCCS----------SCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCS------------------
T ss_pred -eeeEecCCC----------CcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC------------------
Confidence 001123343 56677776 456677665 7899999999998887764332
Q ss_pred cceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CC
Q 001245 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NG 449 (1115)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG 449 (1115)
..|.+++++ +..+++|+.||+|++||+ +|
T Consensus 297 -------------------------------------------------~~v~~~~~~-~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 297 -------------------------------------------------RGIACLQYR-DRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp -------------------------------------------------SCEEEEEEE-TTEEEEEETTSCEEEEETTTC
T ss_pred -------------------------------------------------CcEEEEEeC-CCEEEEEeCCCeEEEEECCCC
Confidence 223444442 235899999999999999 89
Q ss_pred CeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-Cc---------cccccccccCCEEEEEecCCEEEeecCCCc
Q 001245 450 NRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GN---------LLGGWVAHSSPVIKMAVGAGYIFTLANHGG 519 (1115)
Q Consensus 450 ~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~---------ll~~l~gH~~~V~sva~dg~~laSgS~Dgt 519 (1115)
+++.++.+|...|.+++++|.+|++|+.||+|++||+. ++ ++..+.+|.+.|.++++++++++|||.||+
T Consensus 327 ~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 327 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDT 406 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSE
T ss_pred CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCE
Confidence 99999999999999999999999999999999999975 44 788899999999999999999999999999
Q ss_pred eEEeeecCCC
Q 001245 520 IRGWNVTSPG 529 (1115)
Q Consensus 520 IRlWdl~~p~ 529 (1115)
|++||+....
T Consensus 407 i~iwd~~~~~ 416 (435)
T 1p22_A 407 ILIWDFLNDP 416 (435)
T ss_dssp EEEEC-----
T ss_pred EEEEECCCCC
Confidence 9999997643
No 38
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-30 Score=331.58 Aligned_cols=342 Identities=11% Similarity=0.063 Sum_probs=236.4
Q ss_pred eeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 133 CFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 133 ~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
..+..++.+ +++++| +.|++|+|||..++..... ..| ..+|.+|+|+| |++|+||
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~-~~~V~~l~fsp-g~~L~S~ 75 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK--------------------LED-RSAIKEMRFVK-GIYLVVI 75 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE--------------------CSS-CCCEEEEEEET-TTEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE--------------------cCC-CCCEEEEEEcC-CCEEEEE
Confidence 456677777 455665 5899999999876543321 123 67899999999 8899999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
+.|++|++||+.++ +.+.++. |.+.|++++|+|+|+ |++|+.||+|++||++++... .+.
T Consensus 76 s~D~~v~lWd~~~~--------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~--------- 136 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQ--------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFK--------- 136 (902)
T ss_dssp ETTCEEEEEETTTC--------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEE---------
T ss_pred ECcCeEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cce---------
Confidence 99999999999874 3355564 778999999999998 799999999999999876432 000
Q ss_pred Eeeeee---eeecccceecceeeeecCCeEEEEEeCCC-CEEEeec-CCeEEEEEcCCccEEEEEecC------------
Q 001245 289 IVERSY---IDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNID------------ 351 (1115)
Q Consensus 289 ~~~~~~---~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~s-d~tI~lWD~~tg~ll~tl~~~------------ 351 (1115)
..... ..+++|. +.|.++++++++ ..+++++ +++| |||++++++++++..+
T Consensus 137 -i~~~~~~~~~~~~h~----------~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 137 -LDNLQKSSFFPAARL----------SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp -ECCHHHHHTCSSSCC----------CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred -eccccccccccccCC----------CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccc
Confidence 00000 0123343 678889998853 4566654 6889 9999999999998765
Q ss_pred ------CceeeEEeccCCCCcc--ccccceEEEEecCCC---------------------------Cccceeeeeec---
Q 001245 352 ------GQIENRVDMSLLPDFA--MEDEFKTKIVTSSKK---------------------------DKAQSSFGFFQ--- 393 (1115)
Q Consensus 352 ------~~~~~~v~~s~~~~~~--~~~~~~~~~~~~~~~---------------------------~~~~~~v~f~~--- 393 (1115)
...++++.|++++... ...+..+++|..... ......+.|.+
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~ 284 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENN 284 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSS
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCC
Confidence 2457889999876532 234445666643110 00122334421
Q ss_pred -c-ccceEEecc--------------------------------------------------------------------
Q 001245 394 -R-SRNAIMGAA-------------------------------------------------------------------- 403 (1115)
Q Consensus 394 -~-~~~~~~Gs~-------------------------------------------------------------------- 403 (1115)
+ ...+++|+.
T Consensus 285 pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~ 364 (902)
T 2oaj_A 285 PEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNP 364 (902)
T ss_dssp TTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSC
T ss_pred CCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCc
Confidence 1 122333322
Q ss_pred ---------CcEEEEec-ccc-----------c----------------------------------ccCCCceEEEEEc
Q 001245 404 ---------DAVRRVAA-KGG-----------F----------------------------------GDDNRRTEALTTS 428 (1115)
Q Consensus 404 ---------d~v~~~~~-~g~-----------l----------------------------------~~h~~~V~aVa~S 428 (1115)
+.++.|+. .|. + .+|...+.+|+|+
T Consensus 365 ~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s 444 (902)
T 2oaj_A 365 GLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA 444 (902)
T ss_dssp SEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC
T ss_pred eeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc
Confidence 22333331 110 0 1112223334557
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCee--EEe----e-----cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-C----
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRL--QDF----Q-----YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-G---- 488 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l--~tl----~-----gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G---- 488 (1115)
|||. |+||+.|++||+||+ +|.+. ..+ . +|...|++|+ |||++||+|+.||+|+|||++ +
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence 8887 799999999999999 55321 112 1 8999999999 789999999999999999986 4
Q ss_pred -----------------------------------------ccccccccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 489 -----------------------------------------NLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 489 -----------------------------------------~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
+++..+.+|.+.|++|++ || +||+|+.|++||+||+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 236788999999999995 88 9999999999999998
Q ss_pred cCC
Q 001245 526 TSP 528 (1115)
Q Consensus 526 ~~p 528 (1115)
..+
T Consensus 604 ~~~ 606 (902)
T 2oaj_A 604 RGP 606 (902)
T ss_dssp TTT
T ss_pred CCC
Confidence 654
No 39
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6.6e-30 Score=282.82 Aligned_cols=274 Identities=15% Similarity=0.155 Sum_probs=205.7
Q ss_pred EEEe-CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001245 138 IVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (1115)
Q Consensus 138 l~~~-~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIr 216 (1115)
|+-+ ++.|.+|.|++|+|||++++.+.+. +....| ...|.|++|+|+|++||||+.||+|+
T Consensus 31 l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~-----------------~~~~~~-~~~V~~v~~~~~~~~l~sgs~Dg~v~ 92 (318)
T 4ggc_A 31 VDWSSGNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQ 92 (318)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCCCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCeEEEEEECCCCCEEEEEECCCcEE
Confidence 4444 3334448899999999999987653 222234 67899999999999999999999999
Q ss_pred EEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
+||+.++ +.+.++++|...+.++++.+. .|++|+.|+.+++|+..+..... ..
T Consensus 93 iw~~~~~--------~~~~~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~------------------~~ 145 (318)
T 4ggc_A 93 LWDVQQQ--------KRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHV------------------AT 145 (318)
T ss_dssp EEETTTT--------EEEEEEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEE------------------EE
T ss_pred EeecCCc--------eeEEEecCccceEEEeecCCC-EEEEEecCCceEeeecCCCceeE------------------EE
Confidence 9999874 457788999999988776552 37899999999999987643221 11
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEE
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
+.+|. ..+..++..+.+..+++++ |++|+|||+++++..... .
T Consensus 146 ~~~~~----------~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----~--------------------- 189 (318)
T 4ggc_A 146 LSGHS----------QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP-----L--------------------- 189 (318)
T ss_dssp EECCS----------SCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC-----S---------------------
T ss_pred EcCcc----------CceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc-----e---------------------
Confidence 23343 5667778888888888876 689999999876532110 0
Q ss_pred EEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc----EEEEeCCCeEEEEcC-CCC
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM----IWTGGANGLLLQWDP-NGN 450 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~----laSGS~DgtIklWD~-tG~ 450 (1115)
.....+...|.++++++++. +++|+.|++|++||. .+.
T Consensus 190 -------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 190 -------------------------------------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232 (318)
T ss_dssp -------------------------------------EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC
T ss_pred -------------------------------------eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc
Confidence 00112334456666666543 357788999999999 555
Q ss_pred eeEEeecCCCcEEEEE--ecCCEEEee--ecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEe
Q 001245 451 RLQDFQYLPFAVQCLC--TFGSQIWVG--YMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 451 ~l~tl~gH~~~V~sla--~dG~~LaSG--s~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlW 523 (1115)
.... ..|...|.+++ +++..++++ +.||+|+|||+. ++++.++.||.+.|++|++ ||++|+|||.|++||+|
T Consensus 233 ~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 233 CLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp EEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 5544 45667777777 677777654 489999999987 8999999999999999996 78999999999999999
Q ss_pred eecCCCC
Q 001245 524 NVTSPGP 530 (1115)
Q Consensus 524 dl~~p~p 530 (1115)
|+....|
T Consensus 312 d~~~~dP 318 (318)
T 4ggc_A 312 RCFELDP 318 (318)
T ss_dssp CCSCCCC
T ss_pred ECCCCCC
Confidence 9987665
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1.7e-29 Score=289.47 Aligned_cols=273 Identities=15% Similarity=0.159 Sum_probs=209.1
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++++++ |.|++|+|||..++..... ...| ..+|.+++|+|+|..||
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~-~~~v~~~~~sp~g~~la 122 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMP-CTWVMACAYAPSGCAIA 122 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------------------EECS-SSCCCEEEECTTSSEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE-------------------EecC-CCCEEEEEECCCCCEEE
Confidence 44456666666 344444 6899999999987765432 1244 67899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
+|+.|++|++|++..... .........+.+|.+.|.+++|+|++. |+|||.|++||+||+++++...
T Consensus 123 sg~~d~~i~v~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~---------- 190 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKN--ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ---------- 190 (354)
T ss_dssp EESTTSEEEEEECCCCTT--CCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE----------
T ss_pred EeeCCCCEEEEEEecccc--ccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE----------
Confidence 999999999999875321 111234567889999999999999996 8999999999999998875542
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeC--CCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~--~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~ 363 (1115)
.+.+|. ..+.++++.+ ++..+++++ |++|++||++++++++++..|...++.+.++|
T Consensus 191 ---------~~~~h~----------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p- 250 (354)
T 2pbi_B 191 ---------SFHGHG----------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP- 250 (354)
T ss_dssp ---------EEECCS----------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-
T ss_pred ---------EEcCCC----------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-
Confidence 123444 5667777765 456788776 78999999999999999877766555555444
Q ss_pred CCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEeccc-----ccc--cCCCceEEEEEcCCCc-EE
Q 001245 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKG-----GFG--DDNRRTEALTTSIDGM-IW 434 (1115)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~g-----~l~--~h~~~V~aVa~S~Dg~-la 434 (1115)
++..+++|+.| .++.|+... .+. .+...+.+++|+++|. |+
T Consensus 251 ------------------------------~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 251 ------------------------------SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp ------------------------------TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred ------------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEE
Confidence 44445555554 456665421 111 2234678999999998 78
Q ss_pred EEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 435 SGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
+|+.|++|++||+ +|+++.++.+|...|++++ |||++|++|+.||+|+||+
T Consensus 301 ~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999 8999999999999999999 7999999999999999996
No 41
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-31 Score=320.63 Aligned_cols=309 Identities=10% Similarity=-0.014 Sum_probs=205.7
Q ss_pred eEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC------CCEEEEEeCCCeE
Q 001245 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA------SGVVWSGHRDGRI 215 (1115)
Q Consensus 144 ~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d------g~~LaSGS~DgtI 215 (1115)
++++ +.|++|+|||++++..... .......| .+.|.+|+|+|+ +++|||||.||+|
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~---------------~~~~l~~~-~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtv 237 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCV---------------KVQTIVHS-FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTI 237 (524)
T ss_dssp --------CEEEEEEEEETTTCCEE---------------EEEEEEEC-CCSEEEEEECSSCCCSSSSCEEEEEETTSCE
T ss_pred hhhccCCCCceEEEEEccCCCCCce---------------EEEEEEec-CCcEEEEEECCCCCCCCCCceEEEEecCCeE
Confidence 3455 5899999999987653210 00111234 678999999986 6899999999999
Q ss_pred EEEECCCCCCCCC---CCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeee
Q 001245 216 MCWKMNARLLDSD---DGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVER 292 (1115)
Q Consensus 216 rlWdl~~~~~~~~---~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~ 292 (1115)
|+||+.++.+... ...+...++.+|.++|++++|++++.|+|||.||+|++||++++....
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~---------------- 301 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPS---------------- 301 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCS----------------
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCce----------------
Confidence 9999986432100 011224578999999999999998779999999999999998653210
Q ss_pred eeeeecccceecceeeeecCCeEEE--EEeCCC-CEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccc
Q 001245 293 SYIDLRSHLSVNGFSSILTSDIKNL--LSDHSR-AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1115)
Q Consensus 293 ~~~~l~~h~~~~~~~~~~s~~v~~l--as~~~~-~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~ 368 (1115)
..+.+|. ..|.++ ++++++ ..++|++ |++|+|||++++++++++.++...
T Consensus 302 --~~~~~H~----------~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------------- 355 (524)
T 2j04_B 302 --FYDQVHD----------SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------------- 355 (524)
T ss_dssp --EEEECSS----------SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC--------------
T ss_pred --EEeeccc----------ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc--------------
Confidence 1124454 567787 345655 6788876 789999999999877766443211
Q ss_pred cccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCCCceEEEEEcCCCc-EEEEeCCCe
Q 001245 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (1115)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-laSGS~Dgt 441 (1115)
....++.|++++..+++++.+ .+++|+.. ..+.+|...|.+|+|+|+|. |+||+.||+
T Consensus 356 ---------------~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 356 ---------------SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp ---------------CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred ---------------CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence 001235677766666666555 57777653 23568999999999999997 799999999
Q ss_pred EEEEcCCCCeeEEeecC-----CCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEEec-----CC
Q 001245 442 LLQWDPNGNRLQDFQYL-----PFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAVG-----AG 509 (1115)
Q Consensus 442 IklWD~tG~~l~tl~gH-----~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~d-----g~ 509 (1115)
|++||+.+++++.+..+ ...|++++ ++|+.+ ....+..+..|+.+|+++.++.+|...|++|+++ +.
T Consensus 421 v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~ 499 (524)
T 2j04_B 421 LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGK 499 (524)
T ss_dssp EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-------------CCCSCCCEEECCSTTTTT
T ss_pred EEEEechHhhccccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCCcceeeecCCCceEEEEECCCCCCccH
Confidence 99999966555544321 12467777 677744 2222333333444588999999999999999974 34
Q ss_pred EEEeecCCCceEEeeec
Q 001245 510 YIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 510 ~laSgS~DgtIRlWdl~ 526 (1115)
.+|+|+.||+||||++.
T Consensus 500 ~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 500 CYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp EEEEECTTSEEEEEECS
T ss_pred HHHhhccCceEEEEEcc
Confidence 89999999999999985
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=9.2e-31 Score=294.67 Aligned_cols=256 Identities=14% Similarity=0.043 Sum_probs=182.8
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtI 264 (1115)
.| ..+|.+++|+++|++|||||.|++||+||+.++.. ....+++||.++|++|+|+++ |. |+|||.|++|
T Consensus 11 ~H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 11 SH-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cc-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 56 78999999999999999999999999999975321 235678999999999999863 65 8999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEeec-CCeEEEEEcCC
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDART 341 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~s-d~tI~lWD~~t 341 (1115)
|+||++++.... ...+.+|. ..+.+++++++ +..+++++ |++|+|||+++
T Consensus 84 ~iWd~~~~~~~~-----------------~~~~~~h~----------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 84 IIWREENGTWEK-----------------SHEHAGHD----------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp EEECCSSSCCCE-----------------EEEECCCS----------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred EEEECCCCcceE-----------------EEEccCCC----------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 999998753210 01123454 56778888876 66777776 78999999987
Q ss_pred ccEE---EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccC
Q 001245 342 RELL---KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (1115)
Q Consensus 342 g~ll---~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h 418 (1115)
+... ..+..|...+..+.+++ +.. .+ .+..+
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~~-------------------------------~~~---~~------------~~~~~ 170 (316)
T 3bg1_A 137 EGQWEVKKINNAHTIGCNAVSWAP-------------------------------AVV---PG------------SLIDH 170 (316)
T ss_dssp SSCEEECCBTTSSSSCBCCCEECC-------------------------------CCC---C------------------
T ss_pred CCCcceeeeeccccCCcceEEEcc-------------------------------ccC---Cc------------ccccc
Confidence 6322 22222222222222222 100 00 00000
Q ss_pred CCceEEEEEcCCC-cEEEEeCCCeEEEEcCC-C---CeeEEeecCCCcEEEEE--ecC----CEEEeeecccEEEEEeCC
Q 001245 419 NRRTEALTTSIDG-MIWTGGANGLLLQWDPN-G---NRLQDFQYLPFAVQCLC--TFG----SQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg-~laSGS~DgtIklWD~t-G---~~l~tl~gH~~~V~sla--~dG----~~LaSGs~DGtIrlWD~~ 487 (1115)
... ....++ .|++|+.|++|++||+. + ++++++.+|..+|++|+ |++ ++||||+.||+|+|||++
T Consensus 171 ~~~----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 171 PSG----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp CCS----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccc----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 000 001123 58999999999999994 4 47888999999999999 565 899999999999999976
Q ss_pred C----c-cccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 488 G----N-LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 488 G----~-ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
. + ....+.+|.+.|+++++ +|++|++++.|++|++|+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 3 1 23456789999999995 789999999999999999754
No 43
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=1.6e-29 Score=282.70 Aligned_cols=271 Identities=16% Similarity=0.156 Sum_probs=206.0
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++++++ +.|++|+|||++++..... ...| ..+|.+++|++++++|+
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~-~~~v~~~~~~~~~~~l~ 71 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS-------------------IQVT-ETPVRAGKFIARKNWII 71 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-------------------EECC-SSCEEEEEEEGGGTEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE-------------------eecc-CCcEEEEEEeCCCCEEE
Confidence 34456677776 444444 5899999999998876552 1245 67899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
||+.|++||+||+.++ +.+..+++|.+.|++|+|+|++. |+|||.|++||+||++++....
T Consensus 72 s~s~d~~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~---------- 133 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE---------- 133 (304)
T ss_dssp EEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE----------
T ss_pred EECCCCEEEEEECCCC--------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh----------
Confidence 9999999999999874 34678999999999999999997 7899999999999997653220
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcCCccEEEEEec-CCceeeEEeccCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLL 363 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~-~~~~~~~v~~s~~ 363 (1115)
..+.+|. ..+.++++++ ++..+++++ |++|+|||++++.....+.. +...+..+.+.+
T Consensus 134 --------~~~~~h~----------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~- 194 (304)
T 2ynn_A 134 --------QTFEGHE----------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP- 194 (304)
T ss_dssp --------EEECCCC----------SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECC-
T ss_pred --------hhhcccC----------CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEE-
Confidence 1123454 6788999987 567788776 78999999988776554432 222222222221
Q ss_pred CCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-----cccccCCCceEEEEEcCCCc-EEEE
Q 001245 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGFGDDNRRTEALTTSIDGM-IWTG 436 (1115)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-laSG 436 (1115)
.+++..+++|+.|+ ++.|+.. ..+.+|...|.+++++|++. |+||
T Consensus 195 ----------------------------~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 195 ----------------------------LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp ----------------------------STTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred ----------------------------cCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEE
Confidence 12344567777664 6667653 35678999999999999987 7999
Q ss_pred eCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCC--EEEeeecccEEEEEeCC
Q 001245 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGS--QIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 437 S~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~--~LaSGs~DGtIrlWD~~ 487 (1115)
+.||+|++||. ++++++++..|...|++++ |+|. +||+|+.|| +.+|++.
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred cCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 99999999999 8999999999999999999 5664 588888776 6677764
No 44
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.4e-30 Score=293.21 Aligned_cols=307 Identities=12% Similarity=0.119 Sum_probs=225.9
Q ss_pred cceeeEEEEEe------CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-
Q 001245 131 IGCFLRTIVCT------EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA- 202 (1115)
Q Consensus 131 ~~~~l~~l~~~------~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d- 202 (1115)
+...+..++.+ +..+++ +.++.|++||+.++.....+ ..+....| ...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------~~~~~~~~-~~~v~~~~~~~~~ 81 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------QSYVDADA-DENFYTCAWTYDS 81 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------EEEECSCT-TCCEEEEEEEECT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------eeccccCC-CCcEEEEEeccCC
Confidence 45566777776 234555 57889999999987665420 00111113 568999999999
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC-CCc-EEEEeCCCcEEEEeCCCcceeec
Q 001245 203 ---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALS 277 (1115)
Q Consensus 203 ---g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp-dG~-L~SgS~DgtIrvWdl~t~~~~l~ 277 (1115)
|.+|++|+.||+|++||+.++ +....+.+|.++|++|+|+| ++. |++|+.||+|++||+.+++....
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITM--------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI 153 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTC--------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCCCEEEEecCCCEEEEEEchhc--------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence 679999999999999999863 44678899999999999999 777 78999999999999987654421
Q ss_pred cCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceee
Q 001245 278 LKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN 356 (1115)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~ 356 (1115)
+ ..+.+|. ..+.++++++++..+++++ |++|++||+++++.+..+....
T Consensus 154 ~----------------~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 203 (366)
T 3k26_A 154 F----------------GGVEGHR----------DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY---- 203 (366)
T ss_dssp E----------------CSTTSCS----------SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH----
T ss_pred e----------------ccccccc----------CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE----
Confidence 1 1112333 6788999999998888876 6899999999887655443210
Q ss_pred EEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEE
Q 001245 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG 436 (1115)
Q Consensus 357 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSG 436 (1115)
.+++......... ..... .....+..|...|.+++++ +..+++|
T Consensus 204 --~~~~~~~~~~~~~---------------------------~~~~~------~~~~~~~~~~~~v~~~~~~-~~~l~~~ 247 (366)
T 3k26_A 204 --DYNPNKTNRPFIS---------------------------QKIHF------PDFSTRDIHRNYVDCVRWL-GDLILSK 247 (366)
T ss_dssp --TCCGGGCSSCCCC---------------------------EEECC------CSEEECSSCSSCCCEEEEE-TTEEEEE
T ss_pred --EecCCCCcccccc---------------------------eeecc------CccccccCCcceEEEEEEc-CCEEEEE
Confidence 1111100000000 00000 0001234577889999998 4568999
Q ss_pred eCCCeEEEEcC-CCCe--------------eEEeecCCCcEEEEE--ec--CCEEEeeecccEEEEEeCC-Cccc----c
Q 001245 437 GANGLLLQWDP-NGNR--------------LQDFQYLPFAVQCLC--TF--GSQIWVGYMNGIVQVLDLE-GNLL----G 492 (1115)
Q Consensus 437 S~DgtIklWD~-tG~~--------------l~tl~gH~~~V~sla--~d--G~~LaSGs~DGtIrlWD~~-G~ll----~ 492 (1115)
+.|++|++||+ ++++ +..+.+|...|++++ ++ |++|++|+.||+|++||+. +++. .
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 327 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT 327 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence 99999999998 5543 888999999999887 77 9999999999999999987 5543 4
Q ss_pred ccccc--cCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 493 GWVAH--SSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 493 ~l~gH--~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
.+.+| ...|+++++ +|++|++++.||+|++||+.
T Consensus 328 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 78888 799999986 78999999999999999975
No 45
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.3e-30 Score=297.80 Aligned_cols=271 Identities=15% Similarity=0.154 Sum_probs=210.5
Q ss_pred CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001245 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMN 221 (1115)
Q Consensus 142 ~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~ 221 (1115)
++.|.+|-|++|+|||+.+|..... +....| ...|+||+|+|+|++||||+.||+|++||+.
T Consensus 116 ~n~lAvgld~tV~lWd~~tg~~~~~-----------------~~~~~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSASSGDILQL-----------------LQMEQP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEE-----------------EECCST-TCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCEEEEEECCCCCEEEE-----------------EEecCC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 3444448899999999999986652 122234 6789999999999999999999999999998
Q ss_pred CCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccc
Q 001245 222 ARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (1115)
Q Consensus 222 ~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~ 301 (1115)
++ +.+.++.+|...|.++++++. .|++|+.|++|++||..+..... ..+.+|.
T Consensus 178 ~~--------~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~------------------~~~~~h~ 230 (420)
T 4gga_A 178 QQ--------KRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHV------------------ATLSGHS 230 (420)
T ss_dssp TT--------EEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEE------------------EEEECCS
T ss_pred CC--------cEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceee------------------EEecccc
Confidence 73 457788999999999887642 37899999999999987643221 1123444
Q ss_pred eecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecC
Q 001245 302 SVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (1115)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~ 380 (1115)
..+..+...+.+..+++++ |+.++|||..+++.... .
T Consensus 231 ----------~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~------~-------------------------- 268 (420)
T 4gga_A 231 ----------QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV------P-------------------------- 268 (420)
T ss_dssp ----------SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC------C--------------------------
T ss_pred ----------cceeeeeecCCCCeeeeeeccccceEEeeccccccce------e--------------------------
Confidence 5677788888888888876 68999999876542100 0
Q ss_pred CCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc--EE--EEeCCCeEEEEcC-CCCeeEEe
Q 001245 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IW--TGGANGLLLQWDP-NGNRLQDF 455 (1115)
Q Consensus 381 ~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~--la--SGS~DgtIklWD~-tG~~l~tl 455 (1115)
...+..|...|.+++++|++. ++ +|+.|++|++||+ +|+++..+
T Consensus 269 -------------------------------~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 269 -------------------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp -------------------------------SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred -------------------------------eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 000234556778888888754 44 4567999999999 89999998
Q ss_pred ecCCCcEEEEE--ecCCEEEeee--cccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 456 QYLPFAVQCLC--TFGSQIWVGY--MNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 456 ~gH~~~V~sla--~dG~~LaSGs--~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
..|. .|.+++ ++++.|++++ .||+|+|||+. ++++.++.||.+.|++|++ ||++|+|||.|++||+||+...
T Consensus 318 ~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 318 DAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp ECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred cccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 8775 565655 6788887755 79999999986 8999999999999999985 8899999999999999999876
Q ss_pred CCC
Q 001245 529 GPL 531 (1115)
Q Consensus 529 ~pl 531 (1115)
.|.
T Consensus 397 ~~~ 399 (420)
T 4gga_A 397 DPA 399 (420)
T ss_dssp SCC
T ss_pred Ccc
Confidence 665
No 46
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.2e-28 Score=289.21 Aligned_cols=297 Identities=16% Similarity=0.228 Sum_probs=233.1
Q ss_pred eEEEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCC
Q 001245 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1115)
Q Consensus 135 l~~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dg 213 (1115)
+..+..+++.+++ +.|++|++||+.++..... ...| .++|.+++++ +.+|+||+.||
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h-~~~v~~~~~~--~~~l~s~~~dg 179 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGH-TGGVWSSQMR--DNIIISGSTDR 179 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-------------------CCCC-SSCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-------------------EcCC-CCCEEEEEec--CCEEEEEeCCC
Confidence 4455666666666 6899999999998876653 1245 7899999997 57999999999
Q ss_pred eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeee
Q 001245 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (1115)
Q Consensus 214 tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~ 293 (1115)
+|++||+.++ +...++.+|.++|.+++|+++ .|++|+.||+|++||+.+++...
T Consensus 180 ~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~----------------- 233 (445)
T 2ovr_B 180 TLKVWNAETG--------ECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLH----------------- 233 (445)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEE-----------------
T ss_pred eEEEEECCcC--------cEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEE-----------------
Confidence 9999999873 456788999999999999753 48999999999999998765431
Q ss_pred eeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccc
Q 001245 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1115)
Q Consensus 294 ~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~ 372 (1115)
.+.+|. ..+.++++ ++..+++++ +++|++||+++++++.++.++...+..+.+
T Consensus 234 --~~~~~~----------~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------------ 287 (445)
T 2ovr_B 234 --VLMGHV----------AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF------------ 287 (445)
T ss_dssp --EEECCS----------SCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE------------
T ss_pred --EEcCCc----------ccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE------------
Confidence 122343 56677777 445566654 789999999999999998766554433332
Q ss_pred eEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCCCceEEEEEcCCCcEEEEeCCCeEEEEc
Q 001245 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWD 446 (1115)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD 446 (1115)
++..+++|+.| .++.|+.. ..+.+|...+.++.+++ ..+++|+.||+|++||
T Consensus 288 ---------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 288 ---------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWD 345 (445)
T ss_dssp ---------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEE
T ss_pred ---------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC-CEEEEEeCCCeEEEEE
Confidence 23334555444 46666542 23556777888887753 3689999999999999
Q ss_pred C-CCCeeEEeec---CCCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccccc-----ccccCCEEEEEe--cCCEEEee
Q 001245 447 P-NGNRLQDFQY---LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-----VAHSSPVIKMAV--GAGYIFTL 514 (1115)
Q Consensus 447 ~-tG~~l~tl~g---H~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l-----~gH~~~V~sva~--dg~~laSg 514 (1115)
+ +|+++.++.+ |...|+++++++++|++|+.||+|++||+. |+++..+ .+|.+.|+++++ ++.++++|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 9 8999999987 888999999999999999999999999987 8888777 589999999986 66789999
Q ss_pred cCCCc----eEEeeecC
Q 001245 515 ANHGG----IRGWNVTS 527 (1115)
Q Consensus 515 S~Dgt----IRlWdl~~ 527 (1115)
+.||+ |.+||+..
T Consensus 426 ~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDV 442 (445)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred ccCCCCccEEEEEECCC
Confidence 99998 99999865
No 47
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=2.2e-29 Score=313.68 Aligned_cols=278 Identities=18% Similarity=0.247 Sum_probs=207.7
Q ss_pred cceeeEEEEEe--CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE
Q 001245 131 IGCFLRTIVCT--EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV 206 (1115)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L 206 (1115)
+...+..++.+ +..+++ |.|++|++||+.+...... .......+| ...|.|++|+++|++|
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h-~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGH-SHFVEDVVLSSDGQFA 445 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECC-SSCEEEEEECTTSSEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCC-CCcEEEEEECCCCCEE
Confidence 34445566655 334443 6899999999976532210 000112356 8899999999999999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+|||.||+||+||+.++ ....++.+|.+.|++|+|+|+|. |+|||.|++||+||+...... .+
T Consensus 446 ~sgs~Dg~v~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~~------- 509 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-TI------- 509 (694)
T ss_dssp EEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-EE-------
T ss_pred EEEeCCCcEEEEECCCC--------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-ee-------
Confidence 99999999999999863 34678899999999999999997 899999999999998543211 00
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC--CEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR--AKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~--~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~ 362 (1115)
.....+|. ..+.++++++++ ..+++++ |++|+|||+++++++.++
T Consensus 510 --------~~~~~~h~----------~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-------------- 557 (694)
T 3dm0_A 510 --------SEGGEGHR----------DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-------------- 557 (694)
T ss_dssp --------CSSTTSCS----------SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE--------------
T ss_pred --------ccCCCCCC----------CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE--------------
Confidence 00112333 567888888765 4577765 789999999887765443
Q ss_pred CCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCe
Q 001245 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGL 441 (1115)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~Dgt 441 (1115)
.+|...|.+++++|||. |+||+.||+
T Consensus 558 -----------------------------------------------------~~h~~~v~~v~~spdg~~l~sg~~Dg~ 584 (694)
T 3dm0_A 558 -----------------------------------------------------AGHTGYVSTVAVSPDGSLCASGGKDGV 584 (694)
T ss_dssp -----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred -----------------------------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 23555678899999987 789999999
Q ss_pred EEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccccc-------------------
Q 001245 442 LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------------------- 498 (1115)
Q Consensus 442 IklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~------------------- 498 (1115)
|++||+ +|+++.++..| ..|.+++ +++.+|++++ |+.|+|||++ ++++..+..|.
T Consensus 585 i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (694)
T 3dm0_A 585 VLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662 (694)
T ss_dssp CEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CC
T ss_pred EEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCcee
Confidence 999999 89999888754 5788888 6777777765 5569999987 66666554332
Q ss_pred CCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 499 ~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
-.|+++++ ||++|+|||.||+||+|++.
T Consensus 663 ~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 663 IYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 23677774 89999999999999999974
No 48
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=291.20 Aligned_cols=242 Identities=14% Similarity=0.131 Sum_probs=192.4
Q ss_pred CC-ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 191 VS-SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~-~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
.. .|.+++|+|+|++||||+.|++||+||+.++.. ........||.+.|++|+|+|+|+ |+|||.|++|++|+
T Consensus 15 ~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 15 PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp TTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-----EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-----eeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence 44 899999999999999999999999999986321 001122379999999999999998 79999999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~t 347 (1115)
+.+.... ....+.+|. ..|.++++++++..+++++ |++|+|||+.++.....
T Consensus 90 ~~~~~~~-----------------~~~~~~~h~----------~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 90 KNQDDFE-----------------CVTTLEGHE----------NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp ECCC-EE-----------------EEEEECCCS----------SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred ccCCCeE-----------------EEEEccCCC----------CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 8764311 012234565 6789999999999999886 78999999876532111
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~ 427 (1115)
+ ..+.+|...|.++++
T Consensus 143 ~----------------------------------------------------------------~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 143 V----------------------------------------------------------------SVLNSHTQDVKHVVW 158 (345)
T ss_dssp E----------------------------------------------------------------EEECCCCSCEEEEEE
T ss_pred E----------------------------------------------------------------EEecCcCCCeEEEEE
Confidence 0 012345667888999
Q ss_pred cCCCc-EEEEeCCCeEEEEcC-CCC--eeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC--C-----------
Q 001245 428 SIDGM-IWTGGANGLLLQWDP-NGN--RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE--G----------- 488 (1115)
Q Consensus 428 S~Dg~-laSGS~DgtIklWD~-tG~--~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~--G----------- 488 (1115)
+|++. |++|+.|++|++||. +++ ++.++.+|...|++|+ |+|++|++|+.||+|+|||.. +
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~ 238 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence 99987 899999999999999 554 6688999999999999 689999999999999999952 1
Q ss_pred ---cccccccc-ccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 489 ---NLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 489 ---~ll~~l~g-H~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
+++.++.+ |...|+++++ ++..+++++.|++||+|++...
T Consensus 239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 23445555 9999999996 6889999999999999998653
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=286.16 Aligned_cols=242 Identities=12% Similarity=0.123 Sum_probs=187.3
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ec-CCCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QA-HRGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~G-H~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
+| ..+|.+++|+++ +||||+.|++||+||+.++. ......+ .+ |.++|++|+|+|+|+ |+|||.|++|
T Consensus 12 ~h-~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 12 LY-KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp CC-SSCEEEEEEETT--EEEEEESSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cC-CCceeeeccCCC--EEEEEcCCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 45 789999999987 99999999999999998632 1234445 44 999999999999998 7899999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc-
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR- 342 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg- 342 (1115)
||||++..... .. .. .....+.+|. ..|.++++++++..|++++ |++|+|||++++
T Consensus 83 ~iw~~~~~~~~-~~---~~--------~~~~~~~~h~----------~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 83 SIWAKEESADR-TF---EM--------DLLAIIEGHE----------NEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp EEEEC--------C---CC--------EEEEEEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred EEEEcccCcCc-cc---cc--------eeEEEEcCCC----------CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence 99998642110 00 00 0011234555 6789999999999999887 789999998432
Q ss_pred c---EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC
Q 001245 343 E---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1115)
Q Consensus 343 ~---ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~ 419 (1115)
. ++.+ +.+|.
T Consensus 141 ~~~~~~~~-------------------------------------------------------------------~~~h~ 153 (330)
T 2hes_X 141 EEYECISV-------------------------------------------------------------------LQEHS 153 (330)
T ss_dssp CCCEEEEE-------------------------------------------------------------------ECCCS
T ss_pred CCeEEEEE-------------------------------------------------------------------eccCC
Confidence 1 1111 34566
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEcC-CC--CeeEEeecCCCcEEEEE--ec--CCEEEeeecccEEEEEeCC-C--
Q 001245 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NG--NRLQDFQYLPFAVQCLC--TF--GSQIWVGYMNGIVQVLDLE-G-- 488 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG--~~l~tl~gH~~~V~sla--~d--G~~LaSGs~DGtIrlWD~~-G-- 488 (1115)
..|.+++++|++. |+||+.|++|++||. ++ +++.++.+|...|++++ ++ +.+|++|+.|++|++||+. +
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 7788999999987 799999999999998 55 68999999999999999 55 6799999999999999975 2
Q ss_pred ------cccccccc-ccCCEEEEEe-cCCEEEeecCCCceEEeeecC
Q 001245 489 ------NLLGGWVA-HSSPVIKMAV-GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 489 ------~ll~~l~g-H~~~V~sva~-dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.+...+.+ |...|+++++ ++.+++|++.|++|++|++..
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEET
T ss_pred cccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCC
Confidence 34556665 9999999997 456899999999999999764
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.7e-29 Score=289.89 Aligned_cols=277 Identities=14% Similarity=0.101 Sum_probs=196.4
Q ss_pred cceeeEEEEEe-CCeEEE-e-C------CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC
Q 001245 131 IGCFLRTIVCT-EEQLWA-G-G------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE 201 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a-g-~------D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~ 201 (1115)
+...+..++.+ ++++++ + . |++|++|+..++.....+ ......| ...|.+++|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~-~~~V~~~~~s~ 104 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQT-EAGVTDVAWVS 104 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEEC-SSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCC-CCCEEEEEEcC
Confidence 34457788887 556665 3 3 678999998877654320 1111234 67899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
+++ +++|+.||+||+||+.++.+ .......+.+|.++|++|+|+|+|+ |+||+.|++|++||++++++..
T Consensus 105 d~~-~l~~s~dg~v~lWd~~~~~~----~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~---- 175 (357)
T 4g56_B 105 EKG-ILVASDSGAVELWEILEKES----LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK---- 175 (357)
T ss_dssp TTE-EEEEETTSCEEEC------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE----
T ss_pred CCC-EEEEECCCEEEEeeccccce----eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE----
Confidence 976 55688999999999986432 1112234569999999999999998 7999999999999998875442
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCccEEEEEecCCceeeEE
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRV 358 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v 358 (1115)
.+.+|. ..+.++++++++. .+++++ |++|+|||+++++.+..+.....
T Consensus 176 ---------------~~~~h~----------~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~----- 225 (357)
T 4g56_B 176 ---------------SYNAHS----------SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS----- 225 (357)
T ss_dssp ---------------EECCCS----------SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC-----
T ss_pred ---------------EEcCCC----------CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc-----
Confidence 123454 6788888887664 555554 78999999999886654422111
Q ss_pred eccCCCCccccccceEEEEecCCCCccceeeeeeccc-cceEEeccC-cEEEEecc-----cccccCCCceEEEEEcCCC
Q 001245 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS-RNAIMGAAD-AVRRVAAK-----GGFGDDNRRTEALTTSIDG 431 (1115)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~-~~~~~Gs~d-~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg 431 (1115)
......+.|+++. ..+++|+.+ .++.|+.. ..+.+|...|.+++|+|++
T Consensus 226 ------------------------~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 226 ------------------------DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp ------------------------CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSS
T ss_pred ------------------------cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCC
Confidence 0112234555553 345666655 47777653 3456788999999999987
Q ss_pred c--EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC
Q 001245 432 M--IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 432 ~--laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~ 487 (1115)
. |++|+.|++|+|||+ +|++++.+ +|.+.|++|+ | +|++||||+.||+|++||+.
T Consensus 282 ~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 282 SPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 3 799999999999999 67777665 8999999999 4 79999999999999999985
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=1.7e-28 Score=272.87 Aligned_cols=277 Identities=14% Similarity=0.176 Sum_probs=216.5
Q ss_pred cceeeEEEEEe-CC-eEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 131 IGCFLRTIVCT-EE-QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~-~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
+...+..++.+ ++ .+.++.|++|++||+.++..... ...+....| ..+|.+++|+|++++|++
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~ 114 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP--------------VSQLDCLNR-DNYIRSCKLLPDGCTLIV 114 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC--------------SEEEECSCT-TSBEEEEEECTTSSEEEE
T ss_pred CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee--------------eecccccCC-CCcEEEEEEcCCCCEEEE
Confidence 44455566665 34 44456799999999987764432 000111134 678999999999999999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 209 GS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
|+.||+|++||+.++.. .....+.+|...|++++|+|+++ |++|+.||+|++||+.+++....
T Consensus 115 ~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~---------- 178 (337)
T 1gxr_A 115 GGEASTLSIWDLAAPTP------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ---------- 178 (337)
T ss_dssp EESSSEEEEEECCCC--------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----------
T ss_pred EcCCCcEEEEECCCCCc------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee----------
Confidence 99999999999986321 23567889999999999999997 78999999999999987654311
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCc
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~ 366 (1115)
+.+|. ..+.++++++++..+++++ ++.|++||+++++.+..+.
T Consensus 179 ---------~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------------- 222 (337)
T 1gxr_A 179 ---------FQGHT----------DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----------------- 222 (337)
T ss_dssp ---------ECCCS----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-----------------
T ss_pred ---------eeccc----------CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-----------------
Confidence 22333 5688889999888888876 6899999999887665432
Q ss_pred cccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEE
Q 001245 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQW 445 (1115)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklW 445 (1115)
+...+.+++++|++. +++|+.|+.|++|
T Consensus 223 ---------------------------------------------------~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 223 ---------------------------------------------------FTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp ---------------------------------------------------CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ---------------------------------------------------CCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 112356678888887 7899999999999
Q ss_pred cCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCce
Q 001245 446 DPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGI 520 (1115)
Q Consensus 446 D~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtI 520 (1115)
|+.......+..|...|.+++ ++|++|++++.||+|++||+. ++.+ ....|...|.++++ +++++++++.||+|
T Consensus 252 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp ETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred ECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 995444567889999999999 689999999999999999987 5555 44578999999985 78999999999999
Q ss_pred EEeeec
Q 001245 521 RGWNVT 526 (1115)
Q Consensus 521 RlWdl~ 526 (1115)
++|++.
T Consensus 331 ~iw~~~ 336 (337)
T 1gxr_A 331 TVYEVI 336 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.2e-29 Score=292.06 Aligned_cols=235 Identities=22% Similarity=0.302 Sum_probs=191.4
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC------------------CCEEEEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR------------------GPVLSLCI 249 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~------------------~~V~sVaf 249 (1115)
.| .+.|.|++|+|+|++||+|+ |++|++|++.++. ....+.+|. ..|++|+|
T Consensus 62 ~h-~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 131 (393)
T 1erj_A 62 DH-TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--------LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 131 (393)
T ss_dssp EC-SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC--------EEEEECC-----------------CCCCBEEEEEE
T ss_pred CC-CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC--------EEEEecCccccccccccccccccCCCceeEEEEEE
Confidence 36 78999999999999999987 7899999998643 244454443 34999999
Q ss_pred eCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe
Q 001245 250 SSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (1115)
Q Consensus 250 SpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S 328 (1115)
+|+|+ |++|+.|++|++||+++++... .+.+|. ..+.++++.+++..+++
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~-------------------~~~~h~----------~~v~~~~~~p~~~~l~s 182 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVM-------------------ILQGHE----------QDIYSLDYFPSGDKLVS 182 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEE-------------------EECCCS----------SCEEEEEECTTSSEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEE-------------------EEccCC----------CCEEEEEEcCCCCEEEE
Confidence 99998 7899999999999998765431 234554 67889999999999988
Q ss_pred ec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEE
Q 001245 329 AG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (1115)
Q Consensus 329 ~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~ 407 (1115)
++ |++|++||++++++..++..+
T Consensus 183 ~s~d~~v~iwd~~~~~~~~~~~~~-------------------------------------------------------- 206 (393)
T 1erj_A 183 GSGDRTVRIWDLRTGQCSLTLSIE-------------------------------------------------------- 206 (393)
T ss_dssp EETTSEEEEEETTTTEEEEEEECS--------------------------------------------------------
T ss_pred ecCCCcEEEEECCCCeeEEEEEcC--------------------------------------------------------
Confidence 76 789999999998876554211
Q ss_pred EEecccccccCCCceEEEEEcC-CCc-EEEEeCCCeEEEEcC-CCCeeEEe-------ecCCCcEEEEE--ecCCEEEee
Q 001245 408 RVAAKGGFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDF-------QYLPFAVQCLC--TFGSQIWVG 475 (1115)
Q Consensus 408 ~~~~~g~l~~h~~~V~aVa~S~-Dg~-laSGS~DgtIklWD~-tG~~l~tl-------~gH~~~V~sla--~dG~~LaSG 475 (1115)
..+.+++++| +|. +++|+.|++|++||+ +|+++..+ .+|...|++++ ++|++|++|
T Consensus 207 ------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 207 ------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp ------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred ------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 1245567777 665 799999999999999 78888877 68999999999 689999999
Q ss_pred ecccEEEEEeCC-------------CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCC
Q 001245 476 YMNGIVQVLDLE-------------GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 476 s~DGtIrlWD~~-------------G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~ 529 (1115)
+.||+|++||+. +.+..++.+|.+.|.++++ ++++|+|||.|++|++||+.++.
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 999999999974 2356678899999999985 78999999999999999987643
No 53
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.2e-29 Score=278.61 Aligned_cols=282 Identities=11% Similarity=0.119 Sum_probs=224.0
Q ss_pred eeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 187 SVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 187 s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
.+| .++|.|++|+|+|++|++|+.||+|++||+.++ +...++.+|.++|++++|+|+++ |++++.||+|+
T Consensus 29 ~~h-~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 29 TGH-ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp ECC-SSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred EEe-eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 356 889999999999999999999999999999863 45678899999999999999997 78999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-C-----CeEEEEEc
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F-----LSFALWDA 339 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d-----~tI~lWD~ 339 (1115)
+||+.+++....+ . + ...+.++++++++..+++++ + +.|++||+
T Consensus 100 iwd~~~~~~~~~~-------------------~-~----------~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 100 LWDVSNGQCVATW-------------------K-S----------PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp EEETTTCCEEEEE-------------------E-C----------SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred EEECCCCcEEEEe-------------------e-c----------CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence 9999886544111 0 1 25678888898888888765 3 68999998
Q ss_pred CCccEEEEEec-CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEeccc----
Q 001245 340 RTRELLKVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG---- 413 (1115)
Q Consensus 340 ~tg~ll~tl~~-~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g---- 413 (1115)
.++.....+.. .... ...............+.|.+++..+++|..++ ++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 150 ERDSATHELTKVSEEP-------------------IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY 210 (369)
T ss_dssp EECTTTCCEEEECSSC-------------------SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE
T ss_pred cCCccceeecccccce-------------------eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe
Confidence 77653322211 0000 00011111112345667888888888877765 66666532
Q ss_pred --ccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeeccc--------
Q 001245 414 --GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG-------- 479 (1115)
Q Consensus 414 --~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DG-------- 479 (1115)
.+..|...|.+++++|++. |++|+.|++|++||+ +++++..+. |...+.+++ ++|+++++|+.++
T Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 289 (369)
T 3zwl_B 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTS 289 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC--------
T ss_pred EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEe
Confidence 3456888999999999997 799999999999999 889998887 678888888 7899999999988
Q ss_pred ------EEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 480 ------IVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 480 ------tIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.|++||.. ++++..+.+|.+.|.++++ +|++|+|++.||+|++|++..
T Consensus 290 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 290 ANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -----CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred cCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 89999986 8899999999999999986 789999999999999999975
No 54
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=284.23 Aligned_cols=279 Identities=14% Similarity=0.132 Sum_probs=210.8
Q ss_pred cceeeEEEEEeC-C-eEEE-e----CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-
Q 001245 131 IGCFLRTIVCTE-E-QLWA-G----GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA- 202 (1115)
Q Consensus 131 ~~~~l~~l~~~~-~-~l~a-g----~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d- 202 (1115)
+...+..++.+. + .+++ | .|++|++||+.++..... ....| ..+|.|++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~-~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEK-AKPIKCGTFGATS 77 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEE-SSCEEEEECTTCC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecc-cCcEEEEEEcCCC
Confidence 555677777773 3 5665 3 289999999998765431 22245 789999999998
Q ss_pred --CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEE------EeCCCc-EEEEeCCCcEEEEeCCCcc
Q 001245 203 --SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLC------ISSYGD-LWSGSEGGGIKIWPWEAIE 273 (1115)
Q Consensus 203 --g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVa------fSpdG~-L~SgS~DgtIrvWdl~t~~ 273 (1115)
|.+|++|+.||+|++||+.++. .....+.+|.+.|++++ |+|++. |++|+.||+|++||+.++.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPE-------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCS-------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred CCCceEEEecCCCeEEEEeCCCCC-------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence 7999999999999999998632 24678899999999995 567887 7999999999999998764
Q ss_pred e-eeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEE----EeCCCCEEEeec-CCeEEEEEcCCccEEEE
Q 001245 274 K-ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL----SDHSRAKVWSAG-FLSFALWDARTRELLKV 347 (1115)
Q Consensus 274 ~-~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~la----s~~~~~~v~S~s-d~tI~lWD~~tg~ll~t 347 (1115)
. ...+.. ..++. ...+.+++ +++++..+++++ ++.|++||+++++++..
T Consensus 151 ~~~~~~~~----------------~~~~~---------~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 205 (357)
T 3i2n_A 151 DPVANMEP----------------VQGEN---------KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE 205 (357)
T ss_dssp SCSEEECC----------------CTTSC---------CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred Ccceeccc----------------cCCCC---------CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee
Confidence 2 211110 11111 13455555 456777787776 58999999988775432
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~ 427 (1115)
. .|...|.++++
T Consensus 206 ~--------------------------------------------------------------------~~~~~v~~~~~ 217 (357)
T 3i2n_A 206 T--------------------------------------------------------------------NIKNGVCSLEF 217 (357)
T ss_dssp E--------------------------------------------------------------------ECSSCEEEEEE
T ss_pred c--------------------------------------------------------------------CCCCceEEEEc
Confidence 1 12235667888
Q ss_pred cC---CCc-EEEEeCCCeEEEEcC-CCCeeEEee-----cCCCcEEEEE--ecCC-EEEeeecccEEEEEeCC-C-----
Q 001245 428 SI---DGM-IWTGGANGLLLQWDP-NGNRLQDFQ-----YLPFAVQCLC--TFGS-QIWVGYMNGIVQVLDLE-G----- 488 (1115)
Q Consensus 428 S~---Dg~-laSGS~DgtIklWD~-tG~~l~tl~-----gH~~~V~sla--~dG~-~LaSGs~DGtIrlWD~~-G----- 488 (1115)
+| ++. +++|+.||+|++||+ +++++..+. +|...|++++ ++|+ +|++|+.||+|++||+. +
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 87 665 899999999999999 666655554 9999999998 6787 89999999999999975 2
Q ss_pred --------------ccccccccccCCEEEEEe--cCCEEE-eecCCCceEEeeecCC
Q 001245 489 --------------NLLGGWVAHSSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSP 528 (1115)
Q Consensus 489 --------------~ll~~l~gH~~~V~sva~--dg~~la-SgS~DgtIRlWdl~~p 528 (1115)
+++..+.+|.+.|+++++ +|++++ |++.|++|++||+..+
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 357789999999999986 678887 8999999999999764
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=4.6e-29 Score=278.14 Aligned_cols=236 Identities=19% Similarity=0.224 Sum_probs=196.8
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| ..+|.+++|+|+|++|+||+.||+|++|++.++ +....+.+|..+|.+++|+|+|+ |++|+.|++|++
T Consensus 21 gh-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 21 GH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cc-CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 45 889999999999999999999999999999763 34667899999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
||++++++.. .+.+|. ..+.++++.+++..+++++ |++|++||+++++++
T Consensus 92 wd~~~~~~~~-------------------~~~~~~----------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 142 (312)
T 4ery_A 92 WDVSSGKCLK-------------------TLKGHS----------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142 (312)
T ss_dssp EETTTCCEEE-------------------EEECCS----------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EECCCCcEEE-------------------EEcCCC----------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE
Confidence 9998765431 123343 5688889999989998876 689999999988876
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEE
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL 425 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aV 425 (1115)
+.+. .|...|.++
T Consensus 143 ~~~~-------------------------------------------------------------------~~~~~v~~~ 155 (312)
T 4ery_A 143 KTLP-------------------------------------------------------------------AHSDPVSAV 155 (312)
T ss_dssp EEEC-------------------------------------------------------------------CCSSCEEEE
T ss_pred EEec-------------------------------------------------------------------CCCCcEEEE
Confidence 5542 233456778
Q ss_pred EEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEee-cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccC
Q 001245 426 TTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS 499 (1115)
Q Consensus 426 a~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~-gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~ 499 (1115)
++++++. +++|+.|++|++||+ +++++..+. .|...|.+++ ++|++|++|+.||+|++||+. ++++..+.+|..
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 8888887 789999999999999 788888765 4566788888 789999999999999999987 888999999987
Q ss_pred CEEEE----E-ecCCEEEeecCCCceEEeeecCC
Q 001245 500 PVIKM----A-VGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 500 ~V~sv----a-~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.+..+ . .++.++++|+.|++|++||+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 54432 2 36889999999999999998763
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=8e-29 Score=280.40 Aligned_cols=274 Identities=11% Similarity=0.097 Sum_probs=212.3
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.| ..+|.|++|+|++++||+|+.||+|++||+.++. .+....+.+|.++|++++|+|+|+ |++|+.||+|++
T Consensus 6 ~~-~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 6 FL-VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp SC-SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cc-CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 45 7899999999999999999999999999998631 125678899999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE-
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL- 344 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l- 344 (1115)
||+++++.... ..+..|. ..+.++++++++..+++++ ++.|++||+.+++.
T Consensus 79 wd~~~~~~~~~-----------------~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~ 131 (372)
T 1k8k_C 79 WTLKGRTWKPT-----------------LVILRIN----------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131 (372)
T ss_dssp EEEETTEEEEE-----------------EECCCCS----------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred EECCCCeeeee-----------------EEeecCC----------CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence 99977542210 1112232 5688899999988888876 68999999988763
Q ss_pred --EEEE-ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEec---------
Q 001245 345 --LKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA--------- 411 (1115)
Q Consensus 345 --l~tl-~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~--------- 411 (1115)
...+ .++...+.. +.|.+++..+++|+.+ .++.|+.
T Consensus 132 ~~~~~~~~~~~~~i~~-------------------------------~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLS-------------------------------LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180 (372)
T ss_dssp EEEEEECTTCCSCEEE-------------------------------EEECTTSSEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred eeeeeeecccCCCeeE-------------------------------EEEcCCCCEEEEEcCCCCEEEEEcccccccccc
Confidence 2222 223333333 3444445455555443 3555552
Q ss_pred ----------c----cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEE
Q 001245 412 ----------K----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIW 473 (1115)
Q Consensus 412 ----------~----g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~La 473 (1115)
. ..+.+|...|.+++++|++. |++|+.|++|++||+ +++++.++.+|...|++++ ++|++|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 260 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA 260 (372)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred cccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEE
Confidence 1 23446788899999999986 899999999999999 8999999999999999998 6899998
Q ss_pred eeecccEEEEEeCCC--c---cc------------------------------------ccc-ccccCCEEEEEe---cC
Q 001245 474 VGYMNGIVQVLDLEG--N---LL------------------------------------GGW-VAHSSPVIKMAV---GA 508 (1115)
Q Consensus 474 SGs~DGtIrlWD~~G--~---ll------------------------------------~~l-~gH~~~V~sva~---dg 508 (1115)
+| .||.|++||+.. . ++ ..+ .+|.+.|+++++ +|
T Consensus 261 ~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g 339 (372)
T 1k8k_C 261 AG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 339 (372)
T ss_dssp EE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT
T ss_pred EE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC
Confidence 88 899999999753 1 11 233 499999999973 56
Q ss_pred ---CEEEeecCCCceEEeeecC
Q 001245 509 ---GYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 509 ---~~laSgS~DgtIRlWdl~~ 527 (1115)
++|+|||.||+|++|++.+
T Consensus 340 ~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 340 AKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp TSCSEEEEEETTSEEEEEEHHH
T ss_pred cceeeEEEecCCCceEEEEecC
Confidence 8999999999999999865
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=4.8e-28 Score=284.81 Aligned_cols=315 Identities=13% Similarity=0.167 Sum_probs=224.6
Q ss_pred eEEEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCC
Q 001245 135 LRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1115)
Q Consensus 135 l~~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dg 213 (1115)
+..+..+++.+++ +.|++|++||+.++..... ...| .++|.|++|++++ +|+||+.||
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h-~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ-------------------LSGH-DGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEECSTT-EEEEEETTS
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE-------------------EeCC-CcCEEEEEEcCCC-EEEEEeCCC
Confidence 4455666776666 6899999999998876653 1246 8899999999988 999999999
Q ss_pred eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC--CCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEE-
Q 001245 214 RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI- 289 (1115)
Q Consensus 214 tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp--dG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~- 289 (1115)
+|++||+.++ +....+.+|.++|++++|++ ++. |++|+.|++|++||+.+................+.
T Consensus 184 ~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 184 TVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp CEEEEETTTT--------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred CEEEEECCCC--------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 9999999873 35678899999999999994 555 79999999999999987543321111100000000
Q ss_pred eee---eeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC
Q 001245 290 VER---SYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 290 ~~~---~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
.+. ....+.+|. ..+.++ ++++..+++++ +++|++||+++++++.++.+|...+..+
T Consensus 256 ~~~~~~~~~~~~~~~----------~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~------- 316 (464)
T 3v7d_B 256 PEENPYFVGVLRGHM----------ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYST------- 316 (464)
T ss_dssp GGGCTTEEEEECCCS----------SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-------
T ss_pred cCCCeEEEEEccCcc----------ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEE-------
Confidence 000 000112222 445555 34566777765 7899999999999999887665543333
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-----cccccCCCceEEEEEcCCCcEEEEeCC
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGFGDDNRRTEALTTSIDGMIWTGGAN 439 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~laSGS~D 439 (1115)
.|.+++..+++|+.|+ ++.|+.. ..+.+|...|.+++++ +..+++|+.|
T Consensus 317 ------------------------~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~d 371 (464)
T 3v7d_B 317 ------------------------IYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS-DKFLVSAAAD 371 (464)
T ss_dssp ------------------------EEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-SSEEEEEETT
T ss_pred ------------------------EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCEEEEEeCC
Confidence 4445555666666654 6667652 3456788999999998 3569999999
Q ss_pred CeEEEEcC-CCCeeEEee-cCCCcEEEEEecCCEEEeeecccEEEEEeCC-Cccccc-cccccCCEEEEEecCCEEEeec
Q 001245 440 GLLLQWDP-NGNRLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGG-WVAHSSPVIKMAVGAGYIFTLA 515 (1115)
Q Consensus 440 gtIklWD~-tG~~l~tl~-gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~-l~gH~~~V~sva~dg~~laSgS 515 (1115)
|+|++||+ ++.....+. .+...+.++.++|++|++|+ ||+|++||++ |+++.. +.+|.+.|++++++++.+++++
T Consensus 372 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~ 450 (464)
T 3v7d_B 372 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450 (464)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEE
T ss_pred CcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEE
Confidence 99999999 676665553 22334555568999999999 9999999987 888775 7899999999999888776654
Q ss_pred -CCCceEEe
Q 001245 516 -NHGGIRGW 523 (1115)
Q Consensus 516 -~DgtIRlW 523 (1115)
.|+.+.+|
T Consensus 451 ~~~g~~~i~ 459 (464)
T 3v7d_B 451 EKDGQSFLE 459 (464)
T ss_dssp EETTEEEEE
T ss_pred EeCCeEEEE
Confidence 55554444
No 58
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-28 Score=270.41 Aligned_cols=268 Identities=17% Similarity=0.158 Sum_probs=211.2
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
+| .++|.|++| +++++|+||+.||+|++||+.++ +....+.+|.++|++++|+|+++ |++|+.|++|++
T Consensus 16 ~h-~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 16 GH-DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CC-SSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CC-CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 45 889999999 99999999999999999999763 34567889999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
|++....... ....+.+|. ..+.+++++ +..+++++ +++|++|| +++.+
T Consensus 86 ~~~~~~~~~~----------------~~~~~~~~~----------~~i~~~~~~--~~~l~~~~~d~~i~~~d--~~~~~ 135 (313)
T 3odt_A 86 VPLFATSGED----------------PLYTLIGHQ----------GNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSLV 135 (313)
T ss_dssp EETTCCTTSC----------------C-CEECCCS----------SCEEEEEEE--TTEEEEEETTSEEEEEE--TTEEE
T ss_pred EEeeecCCCC----------------cccchhhcc----------cCEEEEEec--CCEEEEEeCCCCEEEEc--CCcEE
Confidence 9987632110 001123343 567777773 45666655 78999999 77777
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeec-cccceEEeccC-cEEEEecc---ccccc-CC
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAAD-AVRRVAAK---GGFGD-DN 419 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~-~~~~~~~Gs~d-~v~~~~~~---g~l~~-h~ 419 (1115)
..+..+...+..+. +.+ ++..+++++.+ .++.|+.. ..+.. |.
T Consensus 136 ~~~~~~~~~v~~~~-------------------------------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 184 (313)
T 3odt_A 136 YNLQAHNASVWDAK-------------------------------VVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHN 184 (313)
T ss_dssp EEEECCSSCEEEEE-------------------------------EEETTTTEEEEEETTSCEEEEETTEEEEEECSSCS
T ss_pred EecccCCCceeEEE-------------------------------EccCCCCEEEEEECCCCEEEEecCceEEEEeccCc
Confidence 77766554433332 332 33445555544 46666642 23344 77
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccccc
Q 001245 420 RRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~ 495 (1115)
..+.++++++++.+++|+.|++|++||+ +++++.++.+|...|++++ ++| +|++|+.||+|++||+. ++++..+.
T Consensus 185 ~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 185 DVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred ccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe
Confidence 8899999999999999999999999999 7999999999999999999 567 79999999999999986 88999999
Q ss_pred cccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 496 AHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 496 gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
+|...|.++++ +++ +++++.|++|++|++.+.
T Consensus 264 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 264 LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 99999999986 565 677999999999998764
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=8.5e-29 Score=283.75 Aligned_cols=268 Identities=9% Similarity=0.071 Sum_probs=205.3
Q ss_pred ceeeEEEEEeC-C-eEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEE
Q 001245 132 GCFLRTIVCTE-E-QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVV 206 (1115)
Q Consensus 132 ~~~l~~l~~~~-~-~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~L 206 (1115)
...+..++.+. + ++++ +.|++|++||+.++..... +....| ...|.+++|+| ++.+|
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h-~~~v~~~~~~~~~~~~l 134 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGP-GDAITGMKFNQFNTNQL 134 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCST-TCBEEEEEEETTEEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCc-CCceeEEEeCCCCCCEE
Confidence 34566666663 2 3444 5799999999997765432 111135 78999999999 78999
Q ss_pred EEEeCCCeEEEEECCCCCCCCCCCCcceEEeec---CCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCc
Q 001245 207 WSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA---HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1115)
Q Consensus 207 aSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G---H~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~ 282 (1115)
++|+.||+|++||+.+ .....+.+ |...|++++|+|++. |++|+.|++|++||+. +++.
T Consensus 135 ~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~------- 197 (383)
T 3ei3_B 135 FVSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI------- 197 (383)
T ss_dssp EEEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE-------
T ss_pred EEEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE-------
Confidence 9999999999999985 23445544 458999999999998 7899999999999984 3222
Q ss_pred ceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCc----cEEEEEecCCceee
Q 001245 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR----ELLKVFNIDGQIEN 356 (1115)
Q Consensus 283 ~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg----~ll~tl~~~~~~~~ 356 (1115)
..+.+|. ..+.++++++++. .+++++ |++|++||++++ .++..+
T Consensus 198 ------------~~~~~h~----------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------- 247 (383)
T 3ei3_B 198 ------------FKEKLHK----------AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-------- 247 (383)
T ss_dssp ------------EEEECSS----------SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--------
T ss_pred ------------EEeccCC----------CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--------
Confidence 1123444 6788999999887 777766 789999999863 222221
Q ss_pred EEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC-CCc-EE
Q 001245 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI-DGM-IW 434 (1115)
Q Consensus 357 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~-Dg~-la 434 (1115)
+|...|.+++++| ++. |+
T Consensus 248 ------------------------------------------------------------~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 248 ------------------------------------------------------------PHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp ------------------------------------------------------------ECSSCEEEEEECTTTSCEEE
T ss_pred ------------------------------------------------------------cCCCceEEEEEcCCCCCEEE
Confidence 2445678899999 886 79
Q ss_pred EEeCCCeEEEEcC-CCCeeEEeecCC-----------------CcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccc
Q 001245 435 TGGANGLLLQWDP-NGNRLQDFQYLP-----------------FAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGG 493 (1115)
Q Consensus 435 SGS~DgtIklWD~-tG~~l~tl~gH~-----------------~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~ 493 (1115)
+|+.|++|++||+ ++++++++.+|. ..+.+++ ++|++ +|+.||+|++||+. ++++..
T Consensus 268 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp EEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred EEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence 9999999999999 788888888764 2334454 67777 88999999999986 889999
Q ss_pred ccc--ccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 494 WVA--HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 494 l~g--H~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+.+ |.+.+..+++ +|++|++|+ |++|++||+.+
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 988 5567777675 889999997 99999999864
No 60
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=9.8e-29 Score=283.09 Aligned_cols=298 Identities=12% Similarity=0.095 Sum_probs=221.5
Q ss_pred cceeeEEEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC----C--
Q 001245 131 IGCFLRTIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA----S-- 203 (1115)
Q Consensus 131 ~~~~l~~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d----g-- 203 (1115)
+...+..++.+...|++ +.|++|++||+.++.....+ ........| ..+|.|++|+++ |
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h-~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVH-KSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECC-TTCEEEEEEEEEEETTTEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecC-CCcEEEEEEecccccCCcc
Confidence 34456677777755555 68999999999887621100 000111245 789999999999 9
Q ss_pred -CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC-----CCCEEEEEEe----CCCc--EEEEeCCCcEEEEeCCC
Q 001245 204 -GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH-----RGPVLSLCIS----SYGD--LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 204 -~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH-----~~~V~sVafS----pdG~--L~SgS~DgtIrvWdl~t 271 (1115)
.+|++|+.||+|++||+.++.. ........+.+| .+.|++++|+ |++. |++|+.||+|++||+.+
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDE---TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTT---TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred ccEEEEEcCCCCEEEEEccCCcc---cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9999999999999999986321 000115678889 5999999999 9886 67999999999999977
Q ss_pred ------cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 272 ------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 272 ------~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
+.... +.+. ..+.+.. .........+.++++++++ .+++++ ++.|++||++++++
T Consensus 158 ~~~~~~~~~~~-~~~~-------------~~~~~~~---~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 219 (397)
T 1sq9_A 158 FADESNSLTLN-WSPT-------------LELQGTV---ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRP 219 (397)
T ss_dssp SSSHHHHTTTC-CCCE-------------EEEEEEE---CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE
T ss_pred cccccccceee-ccCc-------------ceeeeee---ccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCce
Confidence 43321 1000 0011100 0000112567888999888 887776 68999999998887
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccC---CCc
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD---NRR 421 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h---~~~ 421 (1115)
+..+.. ..+| ...
T Consensus 220 ~~~~~~----------------------------------------------------------------~~~h~~~~~~ 235 (397)
T 1sq9_A 220 LYNFES----------------------------------------------------------------QHSMINNSNS 235 (397)
T ss_dssp EEEEEC----------------------------------------------------------------CC---CCCCC
T ss_pred eEEEec----------------------------------------------------------------cccccccCCc
Confidence 766532 0012 345
Q ss_pred eEEEEEcCCCc-EEEEeCC---CeEEEEcC-CCCeeEEeec-------------CCCcEEEEE--ecCCEEEeeecccEE
Q 001245 422 TEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQY-------------LPFAVQCLC--TFGSQIWVGYMNGIV 481 (1115)
Q Consensus 422 V~aVa~S~Dg~-laSGS~D---gtIklWD~-tG~~l~tl~g-------------H~~~V~sla--~dG~~LaSGs~DGtI 481 (1115)
|.+++++|++. |++|+.| +.|++||+ +++++.++.+ |...|.+++ ++|++|++|+.||+|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 77889999987 7899999 99999999 8999999999 999999999 689999999999999
Q ss_pred EEEeCC-Cccccccc------cc---------------cCCEEEEEe--cC----------CEEEeecCCCceEEeeecC
Q 001245 482 QVLDLE-GNLLGGWV------AH---------------SSPVIKMAV--GA----------GYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 482 rlWD~~-G~ll~~l~------gH---------------~~~V~sva~--dg----------~~laSgS~DgtIRlWdl~~ 527 (1115)
++||+. ++++..+. +| ...|.++++ +| +++++++.|++|++|++.+
T Consensus 316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 999987 88889999 88 999999985 56 6999999999999999875
No 61
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.2e-30 Score=292.41 Aligned_cols=272 Identities=10% Similarity=0.043 Sum_probs=197.3
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.+ .++|.|++|+|+|++||+|+.||+|++||+.++. .+...++.+|.++|++|+|+|+|+ |++||.|++|++
T Consensus 9 ~~-~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 9 IL-PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EC-SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred cC-CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 44 6789999999999999999999999999998631 123557889999999999999997 899999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc--
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE-- 343 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~-- 343 (1115)
||+.++... .....+.+|. ..+.++++++++..+++++ +++|++||+++++
T Consensus 82 wd~~~~~~~----------------~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 82 YEKRPDGTW----------------KQTLVLLRLN----------RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW 135 (377)
T ss_dssp C------CC----------------CCEEECCCCS----------SCEEEEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred EEcCCCCce----------------eeeeEecccC----------CceEEEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence 999876411 0001123343 6788899998888888876 6899999999887
Q ss_pred -EEEEEec-CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc--------
Q 001245 344 -LLKVFNI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-------- 412 (1115)
Q Consensus 344 -ll~tl~~-~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-------- 412 (1115)
+++.+.. |...+..+.+++ ++..+++|+.| .++.|+..
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~-------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHP-------------------------------NNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECT-------------------------------TSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred eeeeEeecccCCCeEEEEEcC-------------------------------CCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 3566655 555555555554 33344444433 24444421
Q ss_pred ---------------cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCe----eEEeecCCCcEEEEE--ecC
Q 001245 413 ---------------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNR----LQDFQYLPFAVQCLC--TFG 469 (1115)
Q Consensus 413 ---------------g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~----l~tl~gH~~~V~sla--~dG 469 (1115)
..+ +|...|.+++++|+|. |++|+.|++|++||+ ++++ ++++.+|...|++++ ++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 223 7888999999999997 899999999999999 7877 889999999999998 799
Q ss_pred CEEEeeecccEEEEEeCC--C-cccc--------------------------------------------------cccc
Q 001245 470 SQIWVGYMNGIVQVLDLE--G-NLLG--------------------------------------------------GWVA 496 (1115)
Q Consensus 470 ~~LaSGs~DGtIrlWD~~--G-~ll~--------------------------------------------------~l~g 496 (1115)
++|++|+.|+.+ +|+.. + ++.. ...+
T Consensus 264 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 342 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTV 342 (377)
T ss_dssp EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSS
T ss_pred CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcc
Confidence 999999988877 56543 2 1111 1123
Q ss_pred ccCCEEEEEe---cCC---EEEeecCCCceEEeee
Q 001245 497 HSSPVIKMAV---GAG---YIFTLANHGGIRGWNV 525 (1115)
Q Consensus 497 H~~~V~sva~---dg~---~laSgS~DgtIRlWdl 525 (1115)
|.+.|++|++ ++. .++|||.||+||+||+
T Consensus 343 H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 343 HQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 9999999984 233 6999999999999985
No 62
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=2.6e-28 Score=277.38 Aligned_cols=275 Identities=12% Similarity=0.154 Sum_probs=197.7
Q ss_pred ceeeEEEEE-----e--CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCc-eeeeccCCceEEEEEcC
Q 001245 132 GCFLRTIVC-----T--EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGVSSVMCMVGDE 201 (1115)
Q Consensus 132 ~~~l~~l~~-----~--~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~-~~s~~G~~~V~~la~s~ 201 (1115)
...+..++. . ++++++ +.|++|++||+.+...... ...+. ...+| ..+|.+++|+|
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------------~~~~~~~l~~h-~~~V~~~~~~~ 86 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------------FGIPHKALTGH-NHFVSDLALSQ 86 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------------SEEEEEEECCC-SSCEEEEEECS
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------------cccccchhccC-CCceEEEEECC
Confidence 345556665 2 444444 6899999999876542210 00011 12245 78999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
++.+|+||+.|++||+||+.++ +...++.+|.++|++|+|+|+|+ |+|||.|++|++||+... +.....
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~--------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~- 156 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTG--------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSA- 156 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSS--------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECC-
T ss_pred CCCEEEEEcCCCcEEEEECCCC--------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeee-
Confidence 9999999999999999999873 34678999999999999999997 799999999999998642 211110
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC----------CEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR----------AKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~----------~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
...+|. ..+.++++++.+ ..+++++ |++|++|| .+++++.++.
T Consensus 157 ---------------~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~ 210 (343)
T 2xzm_R 157 ---------------EKENHS----------DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK 210 (343)
T ss_dssp ---------------TTTSCS----------SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE
T ss_pred ---------------cccCCC----------ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc
Confidence 011232 456666666654 5677765 78999999 4566677776
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-cc----cccCCCceE
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-GG----FGDDNRRTE 423 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g~----l~~h~~~V~ 423 (1115)
+|...++. +.|++++..+++|+.|+ ++.|+.. .. ...+...|.
T Consensus 211 ~h~~~v~~-------------------------------~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~ 259 (343)
T 2xzm_R 211 AHESNVNH-------------------------------LSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTIN 259 (343)
T ss_dssp CCSSCEEE-------------------------------EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEE
T ss_pred CccccceE-------------------------------EEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEE
Confidence 65554433 34555566667776664 5666642 11 112445699
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEcC-CCCeeE--Eee-----------cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 424 ALTTSIDGMIWTGGANGLLLQWDP-NGNRLQ--DFQ-----------YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 424 aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~--tl~-----------gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+++|+|++.+++++.|+.|++||+ +++.+. ++. +|...|++++ |+|++|++|+.||+|++||++
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 999999999877788999999999 665543 444 7888999999 789999999999999999975
No 63
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=1.8e-29 Score=291.49 Aligned_cols=282 Identities=18% Similarity=0.231 Sum_probs=208.2
Q ss_pred cceeeEEEEEe-CCe-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++. |.+ +.|++|+|||+.++..... ...| ..+|.+++|+|+|++||
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA-------------------IKLH-CPWVMECAFAPNGQSVA 124 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE-------------------EECC-CTTCCCCEECTTSSEEE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE-------------------EecC-CCCEEEEEECCCCCEEE
Confidence 44566677776 333 443 6899999999998876542 2245 77899999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
||+.|++|++||+.+.... .........+.||.+.|.+++|+|++. |+|||.|++|++||+.++.+...+..+
T Consensus 125 s~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~---- 199 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADR-DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE---- 199 (380)
T ss_dssp ECCSSSCCEEEECCCCSSC-CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC----
T ss_pred EeeCCCcEEEEECCCCccc-cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc----
Confidence 9999999999999753210 011123456889999999999999753 899999999999999987654221100
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcC-CccEEEEEecCCceeeEEeccC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDAR-TRELLKVFNIDGQIENRVDMSL 362 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~-tg~ll~tl~~~~~~~~~v~~s~ 362 (1115)
...+|. .++.++++.+ ++..+++++ |++|+|||++ ++++++++.+|...++++
T Consensus 200 ----------~~~~h~----------~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v---- 255 (380)
T 3iz6_a 200 ----------FPSGHT----------ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV---- 255 (380)
T ss_dssp ----------SSSSCC----------SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE----
T ss_pred ----------cCCCCc----------cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE----
Confidence 012333 5677888765 567777776 7899999998 557777777666554444
Q ss_pred CCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-c----ccc-------cCCCceEEEEEcC
Q 001245 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-G----GFG-------DDNRRTEALTTSI 429 (1115)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g----~l~-------~h~~~V~aVa~S~ 429 (1115)
.|++++..+++|+.|+ ++.|+.. + .+. .+...|.+++|+|
T Consensus 256 ---------------------------~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 256 ---------------------------KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp ---------------------------EECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred ---------------------------EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 4444555566666553 5556542 1 111 1223488999999
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeEEe----ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCC
Q 001245 430 DGM-IWTGGANGLLLQWDP-NGNRLQDF----QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 430 Dg~-laSGS~DgtIklWD~-tG~~l~tl----~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G 488 (1115)
+|. +++|+.||+|++||. +++++..+ .+|.+.|++++ +||++|+||+.||+|+|||+.+
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 998 789999999999999 88888887 68999999999 7999999999999999999874
No 64
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-28 Score=278.60 Aligned_cols=290 Identities=13% Similarity=0.171 Sum_probs=216.7
Q ss_pred eccCCceEEEEEcCCCC-EEEEEeCCCeEEEEEC----CCCCCCCCCCCcceEEeec----------CCCCEEEEEEeCC
Q 001245 188 VKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM----NARLLDSDDGFGEVLSWQA----------HRGPVLSLCISSY 252 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~-~LaSGS~DgtIrlWdl----~~~~~~~~~~~~~~~~l~G----------H~~~V~sVafSpd 252 (1115)
.| .++|.|++|+|+|. +||+|+.||+|++|++ .++... -.......+.. |.+.|++|+|+|+
T Consensus 43 ~~-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 43 VK-LDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY--WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EE-CSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C--EEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred ec-cCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc--ccccccccccccccccccccCCCCceEEEEEcCC
Confidence 45 68999999999999 9999999999999999 753200 00001223332 7889999999999
Q ss_pred Cc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-
Q 001245 253 GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (1115)
Q Consensus 253 G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s- 330 (1115)
|+ |++|+.||+|++||. ++... ..+.+|. ..+.++++++++..+++++
T Consensus 120 ~~~l~~~~~dg~i~i~~~-~~~~~-------------------~~~~~~~----------~~v~~~~~~~~~~~l~~~~~ 169 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK-TGALL-------------------NVLNFHR----------APIVSVKWNKDGTHIISMDV 169 (425)
T ss_dssp SSEEEEEETTSCEEEEET-TSCEE-------------------EEECCCC----------SCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEeCCCeEEEEeC-CCCee-------------------eeccCCC----------ccEEEEEECCCCCEEEEEec
Confidence 98 789999999999994 33222 1123343 6788999999998888876
Q ss_pred CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEe
Q 001245 331 FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (1115)
Q Consensus 331 d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~ 410 (1115)
+++|++||+.+++.+..+..+......... ............+.+.+++..++.+..+.++.|+
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 233 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINA----------------ENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQ 233 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC-------------------------------CCCBSCCEEEETTEEEEECGGGCEEEEE
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceee----------------ccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEE
Confidence 689999999999999888654332100000 0000011112345666665544444555677776
Q ss_pred cc-----cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEE
Q 001245 411 AK-----GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (1115)
Q Consensus 411 ~~-----g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtI 481 (1115)
.. ..+..|...|.++++++++. +++|+.|++|++||+ +++++..+.+|...|.+++ ++| +|++++.||+|
T Consensus 234 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i 312 (425)
T 1r5m_A 234 ITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSV 312 (425)
T ss_dssp TTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcE
Confidence 53 23457888999999999986 799999999999999 7899999999999999998 577 99999999999
Q ss_pred EEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 482 QVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 482 rlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
++||+. ++++..+.+|...|.++++ +++++++++.|++|++||+.+
T Consensus 313 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 313 RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 999986 8889999999999999985 789999999999999999865
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=4.9e-28 Score=284.74 Aligned_cols=291 Identities=13% Similarity=0.108 Sum_probs=208.5
Q ss_pred CCc-eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeC
Q 001245 191 VSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~-V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl 269 (1115)
..+ +.|+.++ +++|+||+.||+|++||+.++ +...++.+|.++|++++|+|++.|+|||.||+|++||+
T Consensus 121 ~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 121 MTSVITCLQFE--DNYVITGADDKMIRVYDSINK--------KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp SSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCC--------cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 455 5677774 579999999999999999863 45778899999999999999988899999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEe--CCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD--HSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~--~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
+++++... +.+|. ..+.++++. +++..+++++ |++|++||+.++....
T Consensus 191 ~~~~~~~~-------------------~~~h~----------~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 191 KKGCCTHV-------------------FEGHN----------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp TTTEEEEE-------------------ECCCS----------SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred CCCcEEEE-------------------ECCCC----------CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 88754421 23343 567777776 4556677765 7899999999887554
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCCC
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDNR 420 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~~ 420 (1115)
......... .+...+... .......... ... ...+.+++..+++|+.+ .++.|+.. ..+.+|..
T Consensus 242 ~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~--~~~--v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 242 DHGEEHDYP-LVFHTPEEN-----PYFVGVLRGH--MAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp -----CCSS-EEESCGGGC-----TTEEEEECCC--SSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred cccccCCcc-eEeeccCCC-----eEEEEEccCc--cce--EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 332211110 001111000 0001111111 111 12345566677777765 56777653 34567889
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccccc-cc
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGW-VA 496 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l-~g 496 (1115)
.|.++++++++. +++|+.||+|++||+ +|++++++.+|...|.++++++++|++|+.||+|++||+. ++....+ ..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 391 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 391 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence 999999999987 899999999999999 8999999999999999999999999999999999999987 4433333 22
Q ss_pred ccCCEEEEEecCCEEEeecCCCceEEeeecCCCCC
Q 001245 497 HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 497 H~~~V~sva~dg~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
+...+.++.++++++++++ |++|++||+.++.++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 2334445567999999998 999999999875443
No 66
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.2e-28 Score=273.15 Aligned_cols=300 Identities=13% Similarity=0.104 Sum_probs=174.5
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC--CCc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--YGD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp--dG~-L~SgS~DgtI 264 (1115)
+| .++|.|++|+|++.+||+|+.||+|++||+.++. ...+....+.+|.++|++|+|+| ++. |++|+.||+|
T Consensus 9 gH-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 9 GH-DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT----SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CC-SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS----CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cc-ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC----CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 56 8899999999999999999999999999998632 12234567899999999999999 576 7899999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEeec-CCeEEEEEcCC
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDART 341 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~s-d~tI~lWD~~t 341 (1115)
++||+.++...... ... .....+.+|. ..+.++++.++ +..+++++ |++|++||+++
T Consensus 84 ~vwd~~~~~~~~~~----~~~------~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 84 KLWEEDPDQEECSG----RRW------NKLCTLNDSK----------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEEECTTSCTTSS----CSE------EEEEEECCCS----------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEEecCCCcccccc----cCc------ceeeeecccC----------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 99999875421100 000 0011123333 67888999988 88888765 68999999998
Q ss_pred ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecc---ccceEEeccCcEEEEecc------
Q 001245 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR---SRNAIMGAADAVRRVAAK------ 412 (1115)
Q Consensus 342 g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~---~~~~~~Gs~d~v~~~~~~------ 412 (1115)
++.++.+...... ....+ ...........+.+.++ +..++++..++...+...
T Consensus 144 ~~~~~~~~~~~~~-~~~~~-----------------~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (351)
T 3f3f_A 144 PSDLRSWTLTSEM-KVLSI-----------------PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH 205 (351)
T ss_dssp TTCTTCCEEEEEE-ESCSC-----------------CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE
T ss_pred hHHhccccccccc-ccccc-----------------ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee
Confidence 8765444211111 00000 00001111223334433 334444444443333321
Q ss_pred --cccccCCCceEEEEEcCCC----c-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEE----eeecc
Q 001245 413 --GGFGDDNRRTEALTTSIDG----M-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIW----VGYMN 478 (1115)
Q Consensus 413 --g~l~~h~~~V~aVa~S~Dg----~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~La----SGs~D 478 (1115)
..+.+|...|.+++++|++ . |++|+.||+|++||+ ++.+......+...+.... +.+..++ .+...
T Consensus 206 ~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (351)
T 3f3f_A 206 VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTE 285 (351)
T ss_dssp EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------
T ss_pred eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccc
Confidence 1233455555555555554 2 455555566666655 4433333222222222111 1122222 22223
Q ss_pred cEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCCC
Q 001245 479 GIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 479 GtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
..+.+|+.. ++++..+.+|.+.|+++++ +|++|+||+.||+|++|++.++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 286 EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp -----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred eeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 334444433 4778889999999999986 788999999999999999987543
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=3.2e-28 Score=321.42 Aligned_cols=262 Identities=12% Similarity=0.076 Sum_probs=210.9
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.| .+.|.|++|+|+|++||||+.||+|++||+.++ +...++.+|.++|++++|+|+|+ |+||+.|++|++
T Consensus 613 ~h-~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 613 PH-TDAVYHACFSQDGQRIASCGADKTLQVFKAETG--------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cc-cccEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 46 789999999999999999999999999999873 35778899999999999999998 789999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC--CCCEEEeec-CCeEEEEEcCCcc
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~--~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
||+.+++.... +.+|. ..+.++++++ +...+++++ |++|++||+.+++
T Consensus 684 wd~~~~~~~~~-------------------~~~~~----------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 684 WDSATGKLVHT-------------------YDEHS----------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp EETTTCCEEEE-------------------EECCS----------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred EECCCCceEEE-------------------EcCCC----------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 99988755421 22343 5677888877 344666665 6899999999999
Q ss_pred EEEEEecCCceeeEEeccCCCCcc--ccccceEEEEecCCC----------------------CccceeeeeeccccceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFA--MEDEFKTKIVTSSKK----------------------DKAQSSFGFFQRSRNAI 399 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~v~f~~~~~~~~ 399 (1115)
++.++.+|...++.+.+++..... ...+..+++|..... ......+.|++++..++
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 999999988888999999876542 234455677753211 01234567888888888
Q ss_pred EeccCcEEEEecc-c-----ccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecC
Q 001245 400 MGAADAVRRVAAK-G-----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFG 469 (1115)
Q Consensus 400 ~Gs~d~v~~~~~~-g-----~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG 469 (1115)
++..+.+..|+.. + ...+|...|.+++++|++. +++|+.|++|++||+ ++.++..+.+|...|++++ ++|
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 8888888888763 1 1236778899999999987 688999999999999 7888999999999999998 689
Q ss_pred CEEEeeecccEEEEEeCC
Q 001245 470 SQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 470 ~~LaSGs~DGtIrlWD~~ 487 (1115)
++|++|+.||+|++||+.
T Consensus 895 ~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SEEEEEETTSCEEEEEHH
T ss_pred CEEEEEeCCCeEEEEEcc
Confidence 999999999999999853
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=6.3e-28 Score=279.87 Aligned_cols=269 Identities=18% Similarity=0.214 Sum_probs=211.9
Q ss_pred EEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001245 138 IVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIM 216 (1115)
Q Consensus 138 l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIr 216 (1115)
+..+...+++ +.|++|++||++++..... ....| ...|.+++|+|++.+|++|+.||+|+
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSGSVSAL------------------AETDE-STYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTCCEEEE------------------EECCT-TCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCCcEeEe------------------eecCC-CCCEEEEEECCCCCEEEEECCCCeEE
Confidence 4545555665 6899999999998876542 22124 67899999999999999999999999
Q ss_pred EEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
+||+.++ +...++.+|.+.|.+++|+++ .|++|+.||+|++||+.+..... ..
T Consensus 160 iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~------------------~~ 212 (401)
T 4aez_A 160 IYDVESQ--------TKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQI------------------GT 212 (401)
T ss_dssp EEETTTC--------CEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEE------------------EE
T ss_pred EEECcCC--------eEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCccee------------------eE
Confidence 9999863 456788999999999999542 48999999999999997532210 11
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEE
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
+.+|. ..+.++++++++..+++++ |++|++||+++++.+.++.
T Consensus 213 ~~~~~----------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-------------------------- 256 (401)
T 4aez_A 213 LQGHS----------SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-------------------------- 256 (401)
T ss_dssp EECCS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC--------------------------
T ss_pred EcCCC----------CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec--------------------------
Confidence 23343 6788899999988888876 6899999999877665542
Q ss_pred EEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc--EEEEe--CCCeEEEEcC-CCC
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGG--ANGLLLQWDP-NGN 450 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~--laSGS--~DgtIklWD~-tG~ 450 (1115)
.|...|.+++++|++. +++|+ .|++|++||+ +++
T Consensus 257 -----------------------------------------~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 257 -----------------------------------------NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp -----------------------------------------CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred -----------------------------------------CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 2334566788888764 56655 7999999999 899
Q ss_pred eeEEeecCCCcEEEEE--ecCCEEEe--eecccEEEEEeCC-Ccc--ccccccccCCEEEEEe--cCCEEEeecCCCceE
Q 001245 451 RLQDFQYLPFAVQCLC--TFGSQIWV--GYMNGIVQVLDLE-GNL--LGGWVAHSSPVIKMAV--GAGYIFTLANHGGIR 521 (1115)
Q Consensus 451 ~l~tl~gH~~~V~sla--~dG~~LaS--Gs~DGtIrlWD~~-G~l--l~~l~gH~~~V~sva~--dg~~laSgS~DgtIR 521 (1115)
++.++. |...|.+++ ++|++|++ |+.||+|++||+. ++. ...+.+|.+.|.++++ +|++|++++.||+|+
T Consensus 296 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 296 RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 999886 567899998 68999999 5589999999986 433 3457899999999985 789999999999999
Q ss_pred EeeecCCCC
Q 001245 522 GWNVTSPGP 530 (1115)
Q Consensus 522 lWdl~~p~p 530 (1115)
+|++.++..
T Consensus 375 iw~~~~~~~ 383 (401)
T 4aez_A 375 FWRVYDGDH 383 (401)
T ss_dssp EEECCC---
T ss_pred EEECCCCcc
Confidence 999987543
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=287.16 Aligned_cols=282 Identities=11% Similarity=0.153 Sum_probs=204.1
Q ss_pred eccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
.| .++|.|++|+| ++.+||||+.||+|++||+.+... ....+....+ +|.++|++|+|+|++. |++|+.||+|+
T Consensus 61 ~h-~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 61 NE-PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV--GEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp TT-TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT--TCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CC-CCceEEEEECCCCCCEEEEecCCceEEEeECccccc--Ccccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 45 78999999999 999999999999999999864100 0111223333 6999999999999987 79999999999
Q ss_pred EEeCC---CcceeeccCCCcceeEEEEeeeeeeeecccceecceeee---ecCCeEEEE--EeCCCCEEEeec-CCeEEE
Q 001245 266 IWPWE---AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSI---LTSDIKNLL--SDHSRAKVWSAG-FLSFAL 336 (1115)
Q Consensus 266 vWdl~---t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~---~s~~v~~la--s~~~~~~v~S~s-d~tI~l 336 (1115)
+||++ ++...... .+| .+..+... ....+.++. ..+++..+++++ +++|++
T Consensus 137 vwd~~~~~~~~~~~~~-------------------~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 196 (437)
T 3gre_A 137 VLKVNHYQQESEVKFL-------------------NCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVII 196 (437)
T ss_dssp EEEEEEEEETTEEEEE-------------------EEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred EEEeccccCCceeecc-------------------ccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99995 33222111 001 00011111 123455555 446677777766 689999
Q ss_pred EEcCCccEEEEEec--CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-
Q 001245 337 WDARTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK- 412 (1115)
Q Consensus 337 WD~~tg~ll~tl~~--~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~- 412 (1115)
||+++++++.++.. |...+++ +.|++++..+++|+.|+ ++.|+..
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~-------------------------------~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 197 FDIRTLERLQIIENSPRHGAVSS-------------------------------ICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp EETTTCCEEEEEECCGGGCCEEE-------------------------------EEECTTSCEEEEEETTSCEEEEETTT
T ss_pred EeCCCCeeeEEEccCCCCCceEE-------------------------------EEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 99999999998875 3333333 34555556667776665 6667653
Q ss_pred c----ccc-cCCCceEEEE----EcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC-----------------------
Q 001245 413 G----GFG-DDNRRTEALT----TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL----------------------- 458 (1115)
Q Consensus 413 g----~l~-~h~~~V~aVa----~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH----------------------- 458 (1115)
+ .+. .|...|.+++ +++++. |++|+.||+|++||+ +|++++++.+|
T Consensus 246 ~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 246 NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 2 222 5667899995 445675 799999999999999 79999888765
Q ss_pred ---CCcEEEEE-ecCCEEEeeecccEEEEEeCC-Ccccccccc-------------------------------------
Q 001245 459 ---PFAVQCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA------------------------------------- 496 (1115)
Q Consensus 459 ---~~~V~sla-~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g------------------------------------- 496 (1115)
...|++++ .+|++|++|+.||+|++||+. ++++..+.+
T Consensus 326 ~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (437)
T 3gre_A 326 IRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY 405 (437)
T ss_dssp CCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC------------
T ss_pred cccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccc
Confidence 34577777 367899999999999999986 777776665
Q ss_pred ccCCEEEEEe--c--CCEEEeecCCCceEEee
Q 001245 497 HSSPVIKMAV--G--AGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 497 H~~~V~sva~--d--g~~laSgS~DgtIRlWd 524 (1115)
|.+.|++|++ + +.+|+||+.||+|++|+
T Consensus 406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8999999985 4 56999999999999995
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=4.3e-29 Score=293.38 Aligned_cols=276 Identities=13% Similarity=0.095 Sum_probs=195.6
Q ss_pred eccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC-CCc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp-dG~-L~SgS~DgtI 264 (1115)
.| ...|+||+|+| ++.+||||+.||+|++||++++.. .....+.||.++|++|+|+| ++. |+|||.||+|
T Consensus 117 ~~-~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 117 PF-DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp EC-SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred CC-CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 44 67899999998 577999999999999999986432 23456789999999999998 565 8999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
|+||+++...... ...+. ....+.++++++++..|++++ +++|++||+++ +
T Consensus 190 ~iwd~~~~~~~~~-------------------~~~~~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~ 241 (435)
T 4e54_B 190 RLQDFKGNILRVF-------------------ASSDT--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-K 241 (435)
T ss_dssp EEEETTSCEEEEE-------------------ECCSS--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-C
T ss_pred EEeeccCCceeEE-------------------eccCC--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-c
Confidence 9999976432210 00111 012345677888888888876 68999999864 4
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecccc-ceEEeccC-cEEEEecc-----cc--
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR-NAIMGAAD-AVRRVAAK-----GG-- 414 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~Gs~d-~v~~~~~~-----g~-- 414 (1115)
.+.++.+|...++.+.+++ .+. .+++|+.| .++.|+.. ..
T Consensus 242 ~~~~~~~h~~~v~~v~~~p-------------------------------~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 242 ELWNLRMHKKKVTHVALNP-------------------------------CCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp BCCCSBCCSSCEEEEEECT-------------------------------TCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred eeEEEecccceEEeeeecC-------------------------------CCceEEEEecCcceeeEEecccccccceEE
Confidence 4555655555544444443 332 34455544 45666542 11
Q ss_pred -cccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCc-------EEEEE-ecCCEEEee--------
Q 001245 415 -FGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFA-------VQCLC-TFGSQIWVG-------- 475 (1115)
Q Consensus 415 -l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~-------V~sla-~dG~~LaSG-------- 475 (1115)
..+|...|.+++|+|||. |++|+.||+|++||+ +++++..+..|... +.+.. +++.++++|
T Consensus 291 ~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 246888999999999987 899999999999999 88888888776532 11111 334444443
Q ss_pred ----ecccEEEEEeCC-Ccccccc-ccccCCEEEEE-e--cCCEEEeecCCCceEEeeecCCCC
Q 001245 476 ----YMNGIVQVLDLE-GNLLGGW-VAHSSPVIKMA-V--GAGYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 476 ----s~DGtIrlWD~~-G~ll~~l-~gH~~~V~sva-~--dg~~laSgS~DgtIRlWdl~~p~p 530 (1115)
..+++|++||.. |+++..+ .+|...|.++. + +|++|+||+ |++|+||++..+.+
T Consensus 371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 345689999986 8887765 47888998873 4 889999987 88999999876433
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=6.6e-28 Score=291.80 Aligned_cols=299 Identities=16% Similarity=0.148 Sum_probs=232.6
Q ss_pred CeEEEeCCCCEEEEeCCCC----cccccccccccccCCCCCCCCCceeeeccCCc-eEEEEEcC--CCCEEEEEeCCCeE
Q 001245 143 EQLWAGGENGLRVWNLKEL----YDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDE--ASGVVWSGHRDGRI 215 (1115)
Q Consensus 143 ~~l~ag~D~tvrvWdl~tg----~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~-V~~la~s~--dg~~LaSGS~DgtI 215 (1115)
..|.++.|+.|++||++++ ..... ...| ..+ |.|++|+| ++++||||+.||+|
T Consensus 31 ~~l~~~~~~~v~v~~~~~~~~~~~~~~~-------------------~~~h-~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 31 NAIAYPCGKSAFVRCLDDGDSKVPPVVQ-------------------FTGH-GSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp TEEEEEETTEEEEEECCSSCCSSCSEEE-------------------ECTT-TTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CEEEEecCCeEEEEECCCCCCccccceE-------------------EecC-CCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 3455577999999999987 43321 2245 778 99999999 99999999999999
Q ss_pred EEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCC----CcEEEEeCCCcceeeccCCCcceeEEEEe
Q 001245 216 MCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG----GGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1115)
Q Consensus 216 rlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~D----gtIrvWdl~t~~~~l~~~~~~~~~~a~~~ 290 (1115)
++||+.++.............+.+|.++|++++|+|+|+ |++++.| +.|++||. +...
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~--------------- 153 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSL--------------- 153 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEE---------------
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcc---------------
Confidence 999996420000000134567889999999999999998 7888887 68999984 2222
Q ss_pred eeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCccEEEEEecCCc---eeeEEeccCCCC
Q 001245 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVFNIDGQ---IENRVDMSLLPD 365 (1115)
Q Consensus 291 ~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~---~~~~v~~s~~~~ 365 (1115)
..+.+|. ..+.++++++++. .+++++ +++|++||+.+++++.++..+.. .+..
T Consensus 154 ----~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~-------- 211 (615)
T 1pgu_A 154 ----GEVSGHS----------QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD-------- 211 (615)
T ss_dssp ----EECCSCS----------SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE--------
T ss_pred ----eeeecCC----------ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEE--------
Confidence 1123344 6788899998886 677665 68999999999999998876654 4333
Q ss_pred ccccccceEEEEecCCCCccceeeeeecc-ccceEEeccC-cEEEEecc-----ccc-c---cCCCceEEEEEcCCCc-E
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAAD-AVRRVAAK-----GGF-G---DDNRRTEALTTSIDGM-I 433 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~-~~~~~~Gs~d-~v~~~~~~-----g~l-~---~h~~~V~aVa~S~Dg~-l 433 (1115)
+.|.++ +..+++++.+ .++.|+.. ..+ . .|...|.+++++ ++. +
T Consensus 212 -----------------------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l 267 (615)
T 1pgu_A 212 -----------------------VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKF 267 (615)
T ss_dssp -----------------------EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEE
T ss_pred -----------------------EEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEE
Confidence 345555 5555665544 46666642 233 3 788899999999 776 8
Q ss_pred EEEeCCCeEEEEcC-CCCeeEEeecC----CCcEEEEE-ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe
Q 001245 434 WTGGANGLLLQWDP-NGNRLQDFQYL----PFAVQCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (1115)
Q Consensus 434 aSGS~DgtIklWD~-tG~~l~tl~gH----~~~V~sla-~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~ 506 (1115)
++++.|++|++||+ +++++.++..| ...+.++. ++|.+|++|+.||+|++||+. ++++..+.+|.+.|.++++
T Consensus 268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 99999999999999 79999999887 35677777 689999999999999999997 8889999999999999999
Q ss_pred cCCEEEeecCCCceEEeeec
Q 001245 507 GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 507 dg~~laSgS~DgtIRlWdl~ 526 (1115)
+. +++++.|++|++|++.
T Consensus 348 -~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 -NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -TT-TEEEETTSCEEETTTT
T ss_pred -cC-cEEECCCCeEEEEEch
Confidence 88 9999999999999975
No 72
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=9.1e-28 Score=281.83 Aligned_cols=265 Identities=19% Similarity=0.272 Sum_probs=212.2
Q ss_pred eccCCc-eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEE
Q 001245 188 VKGVSS-VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~-V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrv 266 (1115)
+| .+. +.|+.+ +|++|+||+.||+|++||+.++ +...++.+|.++|++++|++ ..|++|+.||+|++
T Consensus 116 ~h-~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~-~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 116 GH-DDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTG--------KCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKV 183 (445)
T ss_dssp CS-TTSCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------CEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEE
T ss_pred cc-CCCcEEEEEE--cCCEEEEEECCCcEEEEECCCC--------cEEEEEcCCCCCEEEEEecC-CEEEEEeCCCeEEE
Confidence 45 554 466655 5899999999999999999863 45678899999999999984 35899999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL 345 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll 345 (1115)
||+++++.... +.+|. ..+.+++++ +..+++++ |++|++||+.+++++
T Consensus 184 wd~~~~~~~~~-------------------~~~h~----------~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 184 WNAETGECIHT-------------------LYGHT----------STVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp EETTTTEEEEE-------------------ECCCS----------SCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE
T ss_pred EECCcCcEEEE-------------------ECCCC----------CcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE
Confidence 99988755421 23343 567777775 34566655 789999999999999
Q ss_pred EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCC
Q 001245 346 KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDN 419 (1115)
Q Consensus 346 ~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~ 419 (1115)
.++.++...+.++.+ ++..+++|+.+ .++.|+.. ..+.+|.
T Consensus 233 ~~~~~~~~~v~~~~~---------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 279 (445)
T 2ovr_B 233 HVLMGHVAAVRCVQY---------------------------------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 279 (445)
T ss_dssp EEEECCSSCEEEEEE---------------------------------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred EEEcCCcccEEEEEE---------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence 988776655433332 23344555544 46666642 2456788
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccccccc-
Q 001245 420 RRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA- 496 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g- 496 (1115)
..|.++++ .+..+++|+.|++|++||+ +++++.++.+|...|.+++++|.+|++|+.||+|++||+. ++++..+.+
T Consensus 280 ~~v~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 358 (445)
T 2ovr_B 280 NRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGP 358 (445)
T ss_dssp SCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECST
T ss_pred CceEEEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccC
Confidence 89999998 3335899999999999999 8999999999999999999999999999999999999986 888888886
Q ss_pred --ccCCEEEEEecCCEEEeecCCCceEEeeecCCC
Q 001245 497 --HSSPVIKMAVGAGYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 497 --H~~~V~sva~dg~~laSgS~DgtIRlWdl~~p~ 529 (1115)
|...|.+++++++++++|+.||+|++||+.++.
T Consensus 359 ~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 359 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp TSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCc
Confidence 899999999999999999999999999987643
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=278.46 Aligned_cols=299 Identities=15% Similarity=0.124 Sum_probs=214.8
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
..++++++|+++++..... ..+| .++|.|++|+| ++++||+|+.||+|++||+.++...
T Consensus 20 ~~~~~~~v~~~~~~~~~~~-------------------~~~h-~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~ 79 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDV-------------------ERIH-GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQ 79 (408)
T ss_dssp HHHHHHHHHTEEECTTEEE-------------------CCCC-SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSS
T ss_pred eccCcceeeccccCcceee-------------------eecc-CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 3566788888876654432 2246 88999999999 9999999999999999999874321
Q ss_pred CCCCCcceEE----------eecCCCCEEEEEEeC-CCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeee
Q 001245 227 SDDGFGEVLS----------WQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1115)
Q Consensus 227 ~~~~~~~~~~----------l~GH~~~V~sVafSp-dG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~ 294 (1115)
..... ..+|.++|++|+|+| ++. |++|+.||+|++||+.+++....+.
T Consensus 80 -----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------- 139 (408)
T 4a11_B 80 -----SYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--------------- 139 (408)
T ss_dssp -----SCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE---------------
T ss_pred -----ceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc---------------
Confidence 11100 136999999999999 554 8999999999999998865432110
Q ss_pred eeecccceecceeeeecCCeEEEEEeC---CCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccc
Q 001245 295 IDLRSHLSVNGFSSILTSDIKNLLSDH---SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1115)
Q Consensus 295 ~~l~~h~~~~~~~~~~s~~v~~las~~---~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~ 370 (1115)
+ ...+.++++.+ ++..+++++ ++.|++||+++++++..+..+...+..+.+++....
T Consensus 140 -----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~---- 200 (408)
T 4a11_B 140 -----F----------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY---- 200 (408)
T ss_dssp -----C----------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT----
T ss_pred -----C----------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc----
Confidence 1 12344444444 333566654 689999999999999888777666666666554321
Q ss_pred cceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc---------------------cccccCCCceEEEEEc
Q 001245 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK---------------------GGFGDDNRRTEALTTS 428 (1115)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~---------------------g~l~~h~~~V~aVa~S 428 (1115)
.+++|+.+ .++.|+.. ..+..|...|.+++++
T Consensus 201 --------------------------ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 201 --------------------------ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp --------------------------EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred --------------------------EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 12333332 23344321 1224678899999999
Q ss_pred CCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCC-----cE-EEEE-ecCCEEEeeecccEEEEEeCC-Ccccccccccc
Q 001245 429 IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPF-----AV-QCLC-TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS 498 (1115)
Q Consensus 429 ~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~-----~V-~sla-~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~ 498 (1115)
|++. |++|+.||+|++||+ +++.+..+.++.. .+ ..+. ..+..+++++.|++|++||+. ++++..+.+|.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 9997 899999999999999 7776655544321 11 1222 346778888899999999986 89999999999
Q ss_pred CCEEEEEe--cCCEEEeecCCCceEEeeecCCCCC
Q 001245 499 SPVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 499 ~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
+.|.++++ ++++|+|++.||+|++||+.+..++
T Consensus 335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 99999985 7899999999999999999876544
No 74
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=1.8e-27 Score=268.23 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=195.7
Q ss_pred cceeeEEEEEeC--Ce-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCc-eeeeccCCceEEEEEcCCCCE
Q 001245 131 IGCFLRTIVCTE--EQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 131 ~~~~l~~l~~~~--~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~-~~s~~G~~~V~~la~s~dg~~ 205 (1115)
+...+..|+.+. .. |.+ |.|++|++||+.+...... .+. ...+| ..+|.+++|+++|++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~---------------~~~~~~~~h-~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG---------------VPVRSFKGH-SHIVQDCTLTADGAY 79 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE---------------EEEEEEECC-SSCEEEEEECTTSSE
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc---------------ccceEEeCC-cccEEEEEECCCCCE
Confidence 444566777652 23 444 6899999999865322100 011 12346 889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcce
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~ 284 (1115)
|+|||.|++||+||+.++ +...++.+|.++|.+|+|+|++. |+|||.|++||+||+... +..
T Consensus 80 l~s~s~D~~v~~wd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~-------- 142 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATG--------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLA-------- 142 (319)
T ss_dssp EEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEE--------
T ss_pred EEEEeCCCEEEEEECCCC--------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEE--------
Confidence 999999999999999873 44678999999999999999997 789999999999999642 211
Q ss_pred eEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC------CCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeE
Q 001245 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH------SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENR 357 (1115)
Q Consensus 285 ~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~------~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~ 357 (1115)
.+.+|. ..+.++.+.+ ++..+++++ |++|++||++++++...+.+|...++.
T Consensus 143 -----------~~~~h~----------~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~ 201 (319)
T 3frx_A 143 -----------TLLGHN----------DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201 (319)
T ss_dssp -----------EECCCS----------SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEE
T ss_pred -----------EEeccC----------CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEE
Confidence 123343 3445555544 334677765 789999999999988888766655444
Q ss_pred EeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-ccc---ccCCCceEEEEEcCCCc
Q 001245 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-GGF---GDDNRRTEALTTSIDGM 432 (1115)
Q Consensus 358 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g~l---~~h~~~V~aVa~S~Dg~ 432 (1115)
+ .|++++..+++|+.|+ ++.|+.. +.. ..+...|.+++|+|++.
T Consensus 202 ~-------------------------------~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 202 L-------------------------------TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250 (319)
T ss_dssp E-------------------------------EECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSS
T ss_pred E-------------------------------EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCC
Confidence 4 4455555666666654 5666543 111 12346799999999999
Q ss_pred EEEEeCCCeEEEEcC-CCCeeEEee--------cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 433 IWTGGANGLLLQWDP-NGNRLQDFQ--------YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 433 laSGS~DgtIklWD~-tG~~l~tl~--------gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+++++.++.|++|++ .+.++..+. .|...|.+++ |||++|++|+.||+|+|||+.
T Consensus 251 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 554455667999999 555666654 3566788988 799999999999999999974
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=7.5e-28 Score=269.60 Aligned_cols=267 Identities=10% Similarity=0.045 Sum_probs=209.7
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIr 265 (1115)
.| .++|.|++|+|++.+|++|+.||+|++|++.++.. ......+.+|.++|++++|+|+++ |++|+.||+|+
T Consensus 9 ~h-~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 9 AP-KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CC-SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-----cccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 45 78999999999999999999999999999986320 112456679999999999999998 68999999999
Q ss_pred EEeC-CCcceeeccCCCcceeEEEEeeeeeeeecc--cceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCC
Q 001245 266 IWPW-EAIEKALSLKPEERHTAALIVERSYIDLRS--HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART 341 (1115)
Q Consensus 266 vWdl-~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~--h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~t 341 (1115)
+||+ +++... .+.+ |. ..+.++++.+ +..+++++ +++|++||+++
T Consensus 83 ~wd~~~~~~~~--------------------~~~~~~~~----------~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 83 KVDLIGSPSFQ--------------------ALTNNEAN----------LGICRICKYG-DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp EECSSSSSSEE--------------------ECBSCCCC----------SCEEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred EEEeccCCceE--------------------eccccCCC----------CceEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence 9999 775431 1223 43 6788899988 77887765 68999999987
Q ss_pred ---------ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEec
Q 001245 342 ---------RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAA 411 (1115)
Q Consensus 342 ---------g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~ 411 (1115)
++++.++. +...+. .+.+.++. ++++..+ .++.|+.
T Consensus 132 ~~~~~~~~~~~~~~~~~-~~~~v~-------------------------------~~~~~~~~--l~~~~~d~~i~i~d~ 177 (342)
T 1yfq_A 132 YGDGVIAVKNLNSNNTK-VKNKIF-------------------------------TMDTNSSR--LIVGMNNSQVQWFRL 177 (342)
T ss_dssp HTTBCEEEEESCSSSSS-SCCCEE-------------------------------EEEECSSE--EEEEESTTEEEEEES
T ss_pred cccccccccCCeeeEEe-eCCceE-------------------------------EEEecCCc--EEEEeCCCeEEEEEC
Confidence 55544443 222222 23333333 4444444 4566654
Q ss_pred cc--------ccccCCCceEEEEEcC-CCc-EEEEeCCCeEEEEcC-CC------CeeEEeecCCC---------cEEEE
Q 001245 412 KG--------GFGDDNRRTEALTTSI-DGM-IWTGGANGLLLQWDP-NG------NRLQDFQYLPF---------AVQCL 465 (1115)
Q Consensus 412 ~g--------~l~~h~~~V~aVa~S~-Dg~-laSGS~DgtIklWD~-tG------~~l~tl~gH~~---------~V~sl 465 (1115)
.. ....+...+.+++++| ++. +++|+.||+|++||. .+ +++.++.+|.. .|+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE
Confidence 32 1224567899999999 876 799999999999999 44 88899999866 99999
Q ss_pred E--ecCCEEEeeecccEEEEEeCC-Cccccccccc-cCCEEEEEecCCEEEeecCCCc-eEEeee
Q 001245 466 C--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-SSPVIKMAVGAGYIFTLANHGG-IRGWNV 525 (1115)
Q Consensus 466 a--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH-~~~V~sva~dg~~laSgS~Dgt-IRlWdl 525 (1115)
+ ++|++|++|+.||+|++||+. ++++..+.+| .+.|.+++++|++|+++|.|++ .+.|..
T Consensus 258 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred EEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence 8 689999999999999999987 8899999999 9999999999999999999999 887775
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=270.39 Aligned_cols=239 Identities=12% Similarity=0.053 Sum_probs=188.4
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtI 264 (1115)
+| .++|.|++|+|++++||+|+.||+|++||+..+. .+....+.+|.++|++|+|+++ +. |+||+.||+|
T Consensus 9 ~h-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 9 AH-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp EC-CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CC-cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 56 8899999999999999999999999999997422 2446678999999999999977 66 7899999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEeec-CCeEEEEEcCC
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDART 341 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~s-d~tI~lWD~~t 341 (1115)
++||+.++.... ...+.+|. ..+.++++.++ +..+++++ +++|++||+++
T Consensus 82 ~iwd~~~~~~~~-----------------~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 82 LIWKEENGRWSQ-----------------IAVHAVHS----------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp EEEEEETTEEEE-----------------EEEECCCS----------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred EEEEcCCCceeE-----------------eeeecCCC----------cceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 999998754210 01122333 67888999888 77887765 68999999987
Q ss_pred ccEE--EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC
Q 001245 342 RELL--KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1115)
Q Consensus 342 g~ll--~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~ 419 (1115)
+... ..+. .|.
T Consensus 135 ~~~~~~~~~~-------------------------------------------------------------------~~~ 147 (379)
T 3jrp_A 135 NGTTSPIIID-------------------------------------------------------------------AHA 147 (379)
T ss_dssp TSCCCEEEEE-------------------------------------------------------------------CCT
T ss_pred CCceeeEEec-------------------------------------------------------------------CCC
Confidence 6422 1122 223
Q ss_pred CceEEEEEcC-------------CCc-EEEEeCCCeEEEEcC-CCC----eeEEeecCCCcEEEEE--ec---CCEEEee
Q 001245 420 RRTEALTTSI-------------DGM-IWTGGANGLLLQWDP-NGN----RLQDFQYLPFAVQCLC--TF---GSQIWVG 475 (1115)
Q Consensus 420 ~~V~aVa~S~-------------Dg~-laSGS~DgtIklWD~-tG~----~l~tl~gH~~~V~sla--~d---G~~LaSG 475 (1115)
..|.+++++| ++. +++|+.|++|++||+ ++. ++.++.+|...|++++ ++ |++|++|
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 3344455554 555 899999999999999 553 5678889999999999 67 8999999
Q ss_pred ecccEEEEEeCC-Cc-----cccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 476 YMNGIVQVLDLE-GN-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 476 s~DGtIrlWD~~-G~-----ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+.||+|++||+. ++ .+....+|...|+++++ +|++|++++.||+|++|++..
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999986 32 33445569999999985 889999999999999999875
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=4.1e-28 Score=280.52 Aligned_cols=290 Identities=12% Similarity=0.110 Sum_probs=209.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
.+.+++|+|+|++|++|+.||+|++||+.++. ....+.+| ..+...+|+++|+ |++|+.||+|++||+++
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRD--------GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEE--------TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccc--------eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 34568999999999999999999999998632 22344566 4555667899997 78999999999999987
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEec
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI 350 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~ 350 (1115)
++... .+.+|. ..+.++++++++..+++++ |++|++||+.++++++++.+
T Consensus 129 ~~~~~-------------------~~~~h~----------~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 129 NLQRE-------------------IDQAHV----------SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp CEEEE-------------------ETTSSS----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred cceee-------------------eccccc----------CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence 64431 123444 6788999999999898876 68999999999999999988
Q ss_pred CCceeeEEeccCCCCcc--ccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEe--cc---cccccCCCceE
Q 001245 351 DGQIENRVDMSLLPDFA--MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA--AK---GGFGDDNRRTE 423 (1115)
Q Consensus 351 ~~~~~~~v~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~--~~---g~l~~h~~~V~ 423 (1115)
|...+..+.+++..... ...+..+++|......... .+.... +..+.+.... .. .....+...+.
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~v~ 251 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH-TFNRKE-------NPHDGVNSIALFVGTDRQLHEISTSKKN 251 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE-EECBTT-------BTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE-EeecCC-------CCCCCccEEEEecCCcceeeecccCccc
Confidence 87777777777654322 1223344555432111000 000000 0011111110 00 01122345666
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEee-cCCCcEEEEE--ecCC-EEEeeecccEEEEEeCC-C-ccccccc
Q 001245 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLC--TFGS-QIWVGYMNGIVQVLDLE-G-NLLGGWV 495 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~-gH~~~V~sla--~dG~-~LaSGs~DGtIrlWD~~-G-~ll~~l~ 495 (1115)
+++++|+|. +++|+.||+|++||+ +++.+..+. +|...|++++ ++|+ +|++|+.||+|++||+. + .++..+.
T Consensus 252 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 252 NLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred ceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 777889997 799999999999999 788777664 5888999999 6787 99999999999999987 4 4478888
Q ss_pred c-ccCCEEEEEe-cCCEEEeecCCCceEEeeecCC
Q 001245 496 A-HSSPVIKMAV-GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 496 g-H~~~V~sva~-dg~~laSgS~DgtIRlWdl~~p 528 (1115)
+ |...|.++.+ ++++++|++.|++|++|++..+
T Consensus 332 ~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 7 6778888874 7889999999999999999874
No 78
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.9e-27 Score=275.29 Aligned_cols=267 Identities=14% Similarity=0.154 Sum_probs=196.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC---CCCCCcceEEeecCC------------CCEEEEEEeCCC--
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD---SDDGFGEVLSWQAHR------------GPVLSLCISSYG-- 253 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~---~~~~~~~~~~l~GH~------------~~V~sVafSpdG-- 253 (1115)
.++|.|++|+|+|.+||+|+.||+|++||+.++... ....++....+++|. ++|++|+|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 578999999999999999999999999999863210 001122466789998 999999999997
Q ss_pred c-EEEEeCCCcEEEEeCCCcceeec---cCCCcc----------------eeEEEEeee--eeeeecccceecceeeeec
Q 001245 254 D-LWSGSEGGGIKIWPWEAIEKALS---LKPEER----------------HTAALIVER--SYIDLRSHLSVNGFSSILT 311 (1115)
Q Consensus 254 ~-L~SgS~DgtIrvWdl~t~~~~l~---~~~~~~----------------~~~a~~~~~--~~~~l~~h~~~~~~~~~~s 311 (1115)
. |++|+.|++|++||+.++..... +..+.. +........ ......+| .
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----------~ 177 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH----------T 177 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC----------S
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC----------C
Confidence 4 89999999999999976433210 000000 000000000 00001223 3
Q ss_pred CCeEEEEEeCCCCEEEeecCCeEEEEEcCC-ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeee
Q 001245 312 SDIKNLLSDHSRAKVWSAGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFG 390 (1115)
Q Consensus 312 ~~v~~las~~~~~~v~S~sd~tI~lWD~~t-g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 390 (1115)
..+.++++++++..++++.|++|+|||+++ ++++..+...
T Consensus 178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------- 218 (447)
T 3dw8_B 178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIK--------------------------------------- 218 (447)
T ss_dssp SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECC---------------------------------------
T ss_pred cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecc---------------------------------------
Confidence 678899999999999998889999999984 3343332100
Q ss_pred eeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCC-c-EEEEeCCCeEEEEcC-CCCe----eEEeecCCC---
Q 001245 391 FFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-M-IWTGGANGLLLQWDP-NGNR----LQDFQYLPF--- 460 (1115)
Q Consensus 391 f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~-laSGS~DgtIklWD~-tG~~----l~tl~gH~~--- 460 (1115)
...+.+|...|.+++++|++ . +++|+.||+|++||+ ++++ ++.+.+|..
T Consensus 219 ---------------------~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 277 (447)
T 3dw8_B 219 ---------------------PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277 (447)
T ss_dssp ---------------------CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----
T ss_pred ---------------------cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc
Confidence 01245677789999999997 4 899999999999999 7776 789999886
Q ss_pred ---------cEEEEE--ecCCEEEeeecccEEEEEeCC--CccccccccccCCEE---------------EEE--ecCCE
Q 001245 461 ---------AVQCLC--TFGSQIWVGYMNGIVQVLDLE--GNLLGGWVAHSSPVI---------------KMA--VGAGY 510 (1115)
Q Consensus 461 ---------~V~sla--~dG~~LaSGs~DGtIrlWD~~--G~ll~~l~gH~~~V~---------------sva--~dg~~ 510 (1115)
.|++++ ++|++|++|+. |+|++||+. ++++..+.+|...+. +++ ++|++
T Consensus 278 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~ 356 (447)
T 3dw8_B 278 RSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV 356 (447)
T ss_dssp CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE
T ss_pred cccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCE
Confidence 899999 68999999999 999999985 788999999975322 244 58899
Q ss_pred EEeecCCCceEEeeecCC
Q 001245 511 IFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 511 laSgS~DgtIRlWdl~~p 528 (1115)
|++|+.|++|++||+.+.
T Consensus 357 l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 357 VMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp EEEECSTTEEEEEETTTC
T ss_pred EEEeccCCEEEEEEcCCC
Confidence 999999999999998763
No 79
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.3e-28 Score=279.11 Aligned_cols=277 Identities=13% Similarity=0.076 Sum_probs=211.2
Q ss_pred CceEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe
Q 001245 192 SSVMCMVGDEASG-VVWSG----------HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (1115)
Q Consensus 192 ~~V~~la~s~dg~-~LaSG----------S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS 259 (1115)
..|.|++|+|+|+ +||+| +.||+|++||+.++.. .+... ..+|.+.|++++|+|+|+ |++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~-----~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS-----EKPIA-SLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG-----CSCSC-CCCCSSCEEEEEECSSSSCEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC-----CcEEE-EEecCCceEEEEECCCCCeEEEEc
Confidence 4677999999987 99999 9999999999986321 01122 236999999999999997 89999
Q ss_pred CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeec-CCeEEEE
Q 001245 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALW 337 (1115)
Q Consensus 260 ~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~s-d~tI~lW 337 (1115)
.||+|++||+.+..... . ....+.+|. ..+.+++++++ +..+++++ +++|++|
T Consensus 87 ~dg~v~vw~~~~~~~~~------~---------~~~~~~~h~----------~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAI------N---------SMARFSNHS----------SSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp SSSCEEEECCSSTTSCC------C---------EEEECCCSS----------SCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred cCCeEEEeecccccccc------c---------chhhccCCc----------cceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99999999997621100 0 011223444 56788889887 77888876 6899999
Q ss_pred EcCCcc------EEEEE---ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecc-ccceEEeccC-cE
Q 001245 338 DARTRE------LLKVF---NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGAAD-AV 406 (1115)
Q Consensus 338 D~~tg~------ll~tl---~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~-~~~~~~Gs~d-~v 406 (1115)
|+.+++ ....+ ..+. .....+.|.++ +..+++++.+ .+
T Consensus 142 d~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLTPGQSMSSV-------------------------------DEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp BTTTTSSCTTTCCCBCCCCSCCSS-------------------------------CCCCEEEECSSCTTEEEEESSSSCE
T ss_pred ECCCCccccccccccccccccCCC-------------------------------CCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 998876 21111 1111 12235566666 4566666655 46
Q ss_pred EEEecc-c----ccccC------CCceEEEEEcCCC--cEEEEeCCC---eEEEEcC-CC-CeeEEee-cCCCcEEEEE-
Q 001245 407 RRVAAK-G----GFGDD------NRRTEALTTSIDG--MIWTGGANG---LLLQWDP-NG-NRLQDFQ-YLPFAVQCLC- 466 (1115)
Q Consensus 407 ~~~~~~-g----~l~~h------~~~V~aVa~S~Dg--~laSGS~Dg---tIklWD~-tG-~~l~tl~-gH~~~V~sla- 466 (1115)
+.|+.. + .+..+ ...|.+++++|++ .+++|+.|+ +|++||+ ++ .++..+. +|...|++++
T Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEE
T ss_pred EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEe
Confidence 677653 1 22222 6789999999997 378999999 9999999 55 7888898 9999999999
Q ss_pred -e-cCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cC-CEEEeecCCCceEEeeecCCCC
Q 001245 467 -T-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GA-GYIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 467 -~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg-~~laSgS~DgtIRlWdl~~p~p 530 (1115)
+ +|++|++|+.||+|++||+. ++++..+.+|.+.|.++++ ++ +++++++.|++|++|++....+
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 5 89999999999999999987 8899999999999999986 55 7999999999999999987543
No 80
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=3.5e-27 Score=265.17 Aligned_cols=270 Identities=14% Similarity=0.162 Sum_probs=203.1
Q ss_pred eccCCceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCc
Q 001245 188 VKGVSSVMCMVGDEA---SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG 263 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d---g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dgt 263 (1115)
.| .+.|.|++|+|+ |.+|++|+.||+|++||+.+.. ......+.+|.++|++|+|+|+|+ |++|+.||+
T Consensus 37 ~h-~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 37 SP-DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CC-SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CC-CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 45 789999999999 6999999999999999998511 122367899999999999999997 799999999
Q ss_pred EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE--eCCCCEEEeec-CCeEEEEEcC
Q 001245 264 IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS--DHSRAKVWSAG-FLSFALWDAR 340 (1115)
Q Consensus 264 IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las--~~~~~~v~S~s-d~tI~lWD~~ 340 (1115)
|++||+++++... +.+|. ..+.++++ ++++..+++++ |++|++||++
T Consensus 110 v~iwd~~~~~~~~--------------------~~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ--------------------IAQHD----------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp EEEEETTTTEEEE--------------------EEECS----------SCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred EEEEEcCCCCcee--------------------ecccc----------CceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 9999998765331 12233 56778887 77777777766 7899999999
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccc------
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGG------ 414 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~------ 414 (1115)
+++++..+..+.... .+.+... ..++....+.+..|+....
T Consensus 160 ~~~~~~~~~~~~~~~-~~~~~~~--------------------------------~~~~~~~~~~i~~~~~~~~~~~~~~ 206 (368)
T 3mmy_A 160 SSNPMMVLQLPERCY-CADVIYP--------------------------------MAVVATAERGLIVYQLENQPSEFRR 206 (368)
T ss_dssp CSSCSEEEECSSCEE-EEEEETT--------------------------------EEEEEEGGGCEEEEECSSSCEEEEE
T ss_pred CCcEEEEEecCCCce-EEEecCC--------------------------------eeEEEeCCCcEEEEEeccccchhhh
Confidence 999888887655431 1111111 1112222334444443210
Q ss_pred -cccCCCceEEEEEcCCCc-----EEEEeCCCeEEEEcC-CC---CeeEEeecCCC------------cEEEEE--ecCC
Q 001245 415 -FGDDNRRTEALTTSIDGM-----IWTGGANGLLLQWDP-NG---NRLQDFQYLPF------------AVQCLC--TFGS 470 (1115)
Q Consensus 415 -l~~h~~~V~aVa~S~Dg~-----laSGS~DgtIklWD~-tG---~~l~tl~gH~~------------~V~sla--~dG~ 470 (1115)
...+...+.++++.+++. +++|+.||.|++||+ .+ .++.++.+|.. +|++++ ++|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 286 (368)
T 3mmy_A 207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG 286 (368)
T ss_dssp CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC
T ss_pred ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC
Confidence 011223344454433321 899999999999999 44 57788888876 799998 6899
Q ss_pred EEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 471 QIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 471 ~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+|++|+.||+|++||+. ++++..+.+|...|.++++ +|++|+++|.|+..+.|++-.
T Consensus 287 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 287 TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999999987 8899999999999999986 789999999998888777654
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=3.9e-27 Score=293.44 Aligned_cols=242 Identities=19% Similarity=0.215 Sum_probs=194.1
Q ss_pred eccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
.| ...|.||+++++ +.+|+|||.||+||+|++..+.. ........+.||.+.|++|+|+|+|+ |+|||.||+||
T Consensus 380 ~H-~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~---~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 380 AH-TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK---AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp CC-SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT---CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cC-CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc---ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 56 899999999987 47999999999999999975321 11123457899999999999999998 78999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
|||+.++.+.. .+.+|. ..|.++++++++..+++++ |++|+|||+.....
T Consensus 456 vwd~~~~~~~~-------------------~~~~h~----------~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 456 LWDLAAGVSTR-------------------RFVGHT----------KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp EEETTTTEEEE-------------------EEECCS----------SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred EEECCCCccee-------------------EEeCCC----------CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 99998865431 124455 6788999999999898876 78999999753321
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEE
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~a 424 (1115)
. .+. ....+|...|.+
T Consensus 507 ~-~~~---------------------------------------------------------------~~~~~h~~~v~~ 522 (694)
T 3dm0_A 507 Y-TIS---------------------------------------------------------------EGGEGHRDWVSC 522 (694)
T ss_dssp E-EEC---------------------------------------------------------------SSTTSCSSCEEE
T ss_pred e-eec---------------------------------------------------------------cCCCCCCCcEEE
Confidence 1 110 002346677899
Q ss_pred EEEcCCC---cEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccccccc
Q 001245 425 LTTSIDG---MIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1115)
Q Consensus 425 Va~S~Dg---~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH 497 (1115)
++++|++ .+++|+.|++|++||+ +++++.++.+|...|++++ ++|++|++|+.||+|+|||+. ++++..+..|
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~ 602 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC
Confidence 9999986 4899999999999999 7899999999999999999 689999999999999999986 8888877655
Q ss_pred cCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 498 SSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 498 ~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
..|.++++ ++.++++ +.|+.|++||+.+.
T Consensus 603 -~~v~~~~~sp~~~~l~~-~~~~~i~iwd~~~~ 633 (694)
T 3dm0_A 603 -SVIHALCFSPNRYWLCA-ATEHGIKIWDLESK 633 (694)
T ss_dssp -SCEEEEEECSSSSEEEE-EETTEEEEEETTTT
T ss_pred -CcEEEEEEcCCCcEEEE-EcCCCEEEEECCCC
Confidence 57898886 5555555 45777999998763
No 82
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=7.4e-28 Score=277.36 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=193.7
Q ss_pred ccceeeEEEEEe-CCeEEE-e-C-------CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEE
Q 001245 130 QIGCFLRTIVCT-EEQLWA-G-G-------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG 199 (1115)
Q Consensus 130 ~~~~~l~~l~~~-~~~l~a-g-~-------D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~ 199 (1115)
+.|..+..++.. ++++++ | + |+.|++|++..+...... .+.. ...+..+.| ...|+|+++
T Consensus 12 ~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~~~------~~~~~l~~~-~~~v~s~~~ 81 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QFHI------LSEFALEDN-DDSPTAIDA 81 (365)
T ss_dssp ECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HEEE------EEEEECCTT-SCCCCEEEE
T ss_pred CCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---eeee------eeEEEccCC-CCceEEEEe
Confidence 356677788876 667776 3 2 335999998866533210 0000 000011122 556777776
Q ss_pred cCC---------CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEE-----eecCCCCEEEEEEeCCCc-EE--EEeCCC
Q 001245 200 DEA---------SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLS-----WQAHRGPVLSLCISSYGD-LW--SGSEGG 262 (1115)
Q Consensus 200 s~d---------g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~-----l~GH~~~V~sVafSpdG~-L~--SgS~Dg 262 (1115)
+.+ +..|++|+.|++||+|++++... ..+.... ..+|...|.+|+|||||+ |+ ||+.|+
T Consensus 82 ~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~ 157 (365)
T 4h5i_A 82 SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVND----QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPA 157 (365)
T ss_dssp ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT----EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSC
T ss_pred CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCc----eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCC
Confidence 542 22344456789999999875321 0111111 124566799999999998 44 666899
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCc
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR 342 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg 342 (1115)
+|||||++++++... + .|. .+|.++++++++..+++++++++.+|+..++
T Consensus 158 ~i~iwd~~~~~~~~~-------------------~-~~~----------~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~ 207 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFE-------------------I-ETR----------GEVKDLHFSTDGKVVAYITGSSLEVISTVTG 207 (365)
T ss_dssp EEEEEETTTTEEEEE-------------------E-ECS----------SCCCEEEECTTSSEEEEECSSCEEEEETTTC
T ss_pred EEEEeECCCCcEEEE-------------------e-CCC----------CceEEEEEccCCceEEeccceeEEEEEeccC
Confidence 999999988765421 1 122 5678899999999999999999999999998
Q ss_pred cEEEEE--ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-----EEEEecc---
Q 001245 343 ELLKVF--NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-----VRRVAAK--- 412 (1115)
Q Consensus 343 ~ll~tl--~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-----v~~~~~~--- 412 (1115)
+.+... ..+...+.++ .|++++..+++++.++ ++.|+..
T Consensus 208 ~~~~~~~~~~~~~~v~~v-------------------------------~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~ 256 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKI-------------------------------NFIADDTVLIAASLKKGKGIVLTKISIKSGN 256 (365)
T ss_dssp CEEEEECCCCTTEEEEEE-------------------------------EEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred cceeeeecCCCCCCEEEE-------------------------------EEcCCCCEEEEEecCCcceeEEeecccccce
Confidence 876443 2233333333 4555555455444332 3444331
Q ss_pred ------cccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEe-ecCCCcEEEEE--ecCCEEEeeecccEE
Q 001245 413 ------GGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFAVQCLC--TFGSQIWVGYMNGIV 481 (1115)
Q Consensus 413 ------g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl-~gH~~~V~sla--~dG~~LaSGs~DGtI 481 (1115)
..+.+|...|.+++|||||. ||+|+.|++|+|||+ +|++++++ .+|..+|++|+ |||++|||||.|++|
T Consensus 257 ~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tv 336 (365)
T 4h5i_A 257 TSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTI 336 (365)
T ss_dssp EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred ecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeE
Confidence 23567888999999999998 799999999999999 89999885 79999999999 799999999999999
Q ss_pred EEEeCC
Q 001245 482 QVLDLE 487 (1115)
Q Consensus 482 rlWD~~ 487 (1115)
||||+.
T Consensus 337 rvw~ip 342 (365)
T 4h5i_A 337 HIIKLP 342 (365)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999984
No 83
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=2.2e-26 Score=255.87 Aligned_cols=239 Identities=19% Similarity=0.289 Sum_probs=193.8
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee--cCCCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~--GH~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
.| ..+|.+++|+|++++|++|+ ||+|++||+.++.. ......+. +|.++|++++|+|+|+ |++|+.|++|
T Consensus 49 ~h-~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 49 NH-GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN-----KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp CC-SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC-----CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred cC-CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc-----eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 45 78999999999999999999 99999999986421 12233444 8999999999999998 7899999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
++||+++++... ...+.+|. ..+.++++++++..+++++ ++.|++||+++++
T Consensus 122 ~~~d~~~~~~~~-----------------~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 122 SIWDLAAPTPRI-----------------KAELTSSA----------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp EEEECCCC--EE-----------------EEEEECSS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEECCCCCcce-----------------eeecccCC----------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 999998754210 01122233 5678889999888888775 6899999999887
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
.+..+. .|...+.
T Consensus 175 ~~~~~~-------------------------------------------------------------------~~~~~i~ 187 (337)
T 1gxr_A 175 LVRQFQ-------------------------------------------------------------------GHTDGAS 187 (337)
T ss_dssp EEEEEC-------------------------------------------------------------------CCSSCEE
T ss_pred eeeeee-------------------------------------------------------------------cccCceE
Confidence 665542 2334567
Q ss_pred EEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccC
Q 001245 424 ALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSS 499 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~ 499 (1115)
+++++|++. +++++.|++|++||+ +++++..+. |...|.+++ ++|++|++|+.||.|++||+.......+.+|..
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 266 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSS
T ss_pred EEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcc
Confidence 788898886 799999999999999 788877764 778899998 789999999999999999998555567889999
Q ss_pred CEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 500 PVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 500 ~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.|.++++ +++++++++.|++|++||+.+.
T Consensus 267 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 9999986 6899999999999999998763
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.6e-26 Score=257.38 Aligned_cols=241 Identities=12% Similarity=0.117 Sum_probs=175.2
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCc--ccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC--C
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELY--DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--S 203 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~--~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d--g 203 (1115)
+...+..++.+ ++++++ +.|++|+|||++++. ... ...+| .++|.+++|+++ |
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH-~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLID-------------------TLTGH-EGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCC-SSCEEEEEECCGGGC
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccc-cCCeEEEEecCCCcC
Confidence 34456677776 444444 689999999997542 222 12256 889999999864 8
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
.+|||||.||+||+||+.++.. .....+.+|..+|++|+|+|+ |. |++||.|++|++||+.+.....
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---- 137 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---- 137 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC----
T ss_pred CEEEEEcCCCEEEEEEcCCCce------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee----
Confidence 9999999999999999986421 235678899999999999997 66 7899999999999997642110
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-------------CCEEEeec-CCeEEEEEcCCccEEE
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-------------RAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-------------~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
...+.+|. ..+.+++++++ +..+++++ |++|+|||+++++...
T Consensus 138 -------------~~~~~~h~----------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~ 194 (297)
T 2pm7_B 138 -------------PIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194 (297)
T ss_dssp -------------CEEEECCS----------SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE
T ss_pred -------------eeeeeccc----------CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE
Confidence 01122343 34555565553 45777765 7899999986654110
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
.+ ...+.+|...|.+|+
T Consensus 195 ~~---------------------------------------------------------------~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 195 VL---------------------------------------------------------------ESTLEGHSDWVRDVA 211 (297)
T ss_dssp EE---------------------------------------------------------------EEEECCCSSCEEEEE
T ss_pred EE---------------------------------------------------------------EEEecCCCCceEEEE
Confidence 00 001446777889999
Q ss_pred EcCCC----cEEEEeCCCeEEEEcC-CCC---eeEEe--ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 427 TSIDG----MIWTGGANGLLLQWDP-NGN---RLQDF--QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 427 ~S~Dg----~laSGS~DgtIklWD~-tG~---~l~tl--~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
|+|++ .|+||+.|++|+|||+ ++. ....+ .+|...|++++ ++|++||+|+.||+|+||+..
T Consensus 212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 99984 4899999999999998 432 22334 56888999998 789999999999999999964
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=1.6e-26 Score=271.09 Aligned_cols=229 Identities=18% Similarity=0.258 Sum_probs=188.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl 269 (1115)
..+|.|+++ ++++|++|+.||+|++||+.++ +...++.+|.++|++++| ++. |++|+.||+|++||+
T Consensus 133 ~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred CCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 567999887 6899999999999999999863 456788999999999999 555 899999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
++++.... +.+|. ..+.+++++ +..+++++ |++|++||+.+++.+...
T Consensus 201 ~~~~~~~~-------------------~~~h~----------~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 201 NTGEMLNT-------------------LIHHC----------EAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp SSCCEEEE-------------------ECCCC----------SCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred CCCcEEEE-------------------EcCCC----------CcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee
Confidence 88755421 22343 456677665 34666655 789999999876533110
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
..+.+|...|.++++
T Consensus 250 ----------------------------------------------------------------~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 250 ----------------------------------------------------------------RVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ----------------------------------------------------------------EEECCCSSCEEEEEE-
T ss_pred ----------------------------------------------------------------eEecCCCCcEEEEEe-
Confidence 002244556667777
Q ss_pred CCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe
Q 001245 429 IDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV 506 (1115)
Q Consensus 429 ~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~ 506 (1115)
.+..+++|+.||+|++||+ ++++++++.+|...|.+++++|.+|++|+.||+|++||+. |+++.++.+|.+.|.++++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 3345899999999999999 8999999999999999999999999999999999999987 8999999999999999999
Q ss_pred cCCEEEeecCCCceEEeeecC
Q 001245 507 GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 507 dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+++++++|+.||+|++||+..
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHH
T ss_pred cCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999864
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=3e-27 Score=265.90 Aligned_cols=243 Identities=11% Similarity=0.071 Sum_probs=170.8
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC--CCCE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGV 205 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~--dg~~ 205 (1115)
+...+..++.+ ++++++ +.|++|||||+.++..... ....+| .++|.+++|++ ++.+
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH-~~~V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGH-EGPVWQVAWAHPMYGNI 73 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-----------------EEEECC-SSCEEEEEECCGGGSSC
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCC-CccEEEEEeCCCCCCCE
Confidence 34456677775 344444 6899999999987642110 112256 88999999986 4899
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcEEEEeCCCcceeeccCCCc
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~ 282 (1115)
|+|||.|++|++||+.++.. ....++.+|.++|++|+|+|+ |. |++||.|++|++||+.+.......
T Consensus 74 l~s~s~D~~v~iWd~~~~~~------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~---- 143 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTW------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK---- 143 (316)
T ss_dssp EEEEETTSCEEEECCSSSCC------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC----
T ss_pred EEEEECCCEEEEEECCCCcc------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee----
Confidence 99999999999999986321 345678899999999999998 65 899999999999999764211000
Q ss_pred ceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-----------------CCEEEeec-CCeEEEEEcCCccE
Q 001245 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-----------------RAKVWSAG-FLSFALWDARTREL 344 (1115)
Q Consensus 283 ~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-----------------~~~v~S~s-d~tI~lWD~~tg~l 344 (1115)
..+.+|. ..+.+++++++ +..+++++ |++|+|||++++..
T Consensus 144 ------------~~~~~h~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 201 (316)
T 3bg1_A 144 ------------KINNAHT----------IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ 201 (316)
T ss_dssp ------------CBTTSSS----------SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC
T ss_pred ------------eeecccc----------CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc
Confidence 0112232 11222222222 34677765 68899999754321
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEE
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~a 424 (1115)
.+.+ ..+.+|...|.+
T Consensus 202 ~~~~----------------------------------------------------------------~~l~~h~~~V~~ 217 (316)
T 3bg1_A 202 WKEE----------------------------------------------------------------QKLEAHSDWVRD 217 (316)
T ss_dssp EEEE----------------------------------------------------------------ECCBCCSSCEEE
T ss_pred ccee----------------------------------------------------------------eecccCCCceEE
Confidence 0000 014467778889
Q ss_pred EEEcCCC-----cEEEEeCCCeEEEEcC-CC---C-eeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 425 LTTSIDG-----MIWTGGANGLLLQWDP-NG---N-RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 425 Va~S~Dg-----~laSGS~DgtIklWD~-tG---~-~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
++++|++ .|+||+.|++|++||+ ++ + ..+.+.+|...|++++ |+|++||+|+.||+|+||+..
T Consensus 218 v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 218 VAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999885 4899999999999998 42 2 3455678999999999 789999999999999999964
No 87
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.2e-25 Score=251.11 Aligned_cols=276 Identities=18% Similarity=0.190 Sum_probs=201.1
Q ss_pred cceeeEEEEEe--CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCc-eeeeccCCceEEEEEcCCCCE
Q 001245 131 IGCFLRTIVCT--EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~-~~s~~G~~~V~~la~s~dg~~ 205 (1115)
+...+..|+.+ ++.+++ |.|++|||||+.+...... .+. ...+| ..+|.+++|+|+|++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---------------~~~~~l~~h-~~~V~~~~~s~dg~~ 100 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---------------IPQRALRGH-SHFVSDVVISSDGQF 100 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---------------EEEEEECCC-SSCEEEEEECTTSSE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---------------eeeEEEeCC-CCCEEEEEECCCCCE
Confidence 45567788877 245554 6899999999987653321 011 11245 789999999999999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcce
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERH 284 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~ 284 (1115)
|+||+.|++|++|+.... ........|...+..+.+++++. |+||+.|+.+++||+.......
T Consensus 101 l~s~~~d~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-------- 164 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-------- 164 (340)
T ss_dssp EEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE--------
T ss_pred EEEEcccccceEEeeccc--------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE--------
Confidence 999999999999999863 33456678899999999999987 8999999999999987643221
Q ss_pred eEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEecc
Q 001245 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1115)
Q Consensus 285 ~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s 361 (1115)
....+|. ..+..+++.++ ...+++++ |++|++||+++++++..+.+|...++++.
T Consensus 165 ----------~~~~~~~----------~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~-- 222 (340)
T 4aow_A 165 ----------VQDESHS----------EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVT-- 222 (340)
T ss_dssp ----------ECSSSCS----------SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE--
T ss_pred ----------EEecccc----------CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEE--
Confidence 1122333 44556666543 33455554 78999999999999998877665544444
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEeccc----ccccCCCceEEEEEcCCCcEEEE
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKG----GFGDDNRRTEALTTSIDGMIWTG 436 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g----~l~~h~~~V~aVa~S~Dg~laSG 436 (1115)
|++++..+++|+.|+ ++.|+... ....+...|.+++++|++.++++
T Consensus 223 -----------------------------~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 223 -----------------------------VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA 273 (340)
T ss_dssp -----------------------------ECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred -----------------------------ECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec
Confidence 444555566666554 55555421 11234467899999999999999
Q ss_pred eCCCeEEEEcC-CCCeeEEe---------ecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cc
Q 001245 437 GANGLLLQWDP-NGNRLQDF---------QYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN 489 (1115)
Q Consensus 437 S~DgtIklWD~-tG~~l~tl---------~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ 489 (1115)
+.|++|++||+ ++.++.++ .+|...|++|+ +||++|++|+.||+|+|||++ |.
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999 56566554 36889999999 789999999999999999986 53
No 88
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=4.3e-26 Score=263.98 Aligned_cols=268 Identities=14% Similarity=0.099 Sum_probs=197.0
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
+.|+.|+|||+.+...... ..+ ....| .++|.+++|+| ++.+||||+.||+|++||+.++...
T Consensus 54 ~~~g~i~v~~~~~~~~~~~--------------~~~-~~~~h-~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDK--------------NVP-LVCGH-TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp SSSCCEEEEETTCCEECCT--------------TCC-CBCCC-SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred cCCCEEEEEECccCCCCCC--------------CCc-eEecC-CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 5799999999865322110 001 11246 78999999999 9999999999999999999864210
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCC-c-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceec
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYG-D-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG-~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~ 304 (1115)
....+....+.+|.+.|++|+|+|+| . |+||+.|++|++||+++++....+. ..+|.
T Consensus 118 -~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~~~--- 176 (402)
T 2aq5_A 118 -LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-----------------PDVHP--- 176 (402)
T ss_dssp -SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-----------------TTTCC---
T ss_pred -cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-----------------cCCCC---
Confidence 01113466889999999999999998 3 7899999999999998865442110 02333
Q ss_pred ceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE-ecCCceeeEEeccCCCCccccccceEEEEecCCC
Q 001245 305 GFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF-NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1115)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl-~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~ 382 (1115)
..+.++++++++..+++++ |++|++||+++++.+..+ ..+..
T Consensus 177 -------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------------------- 220 (402)
T 2aq5_A 177 -------DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG----------------------------- 220 (402)
T ss_dssp -------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS-----------------------------
T ss_pred -------CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC-----------------------------
Confidence 5788899999888888775 789999999998877665 21110
Q ss_pred CccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEE---eCCCeEEEEcC-CCCe-eEEee
Q 001245 383 DKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTG---GANGLLLQWDP-NGNR-LQDFQ 456 (1115)
Q Consensus 383 ~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSG---S~DgtIklWD~-tG~~-l~tl~ 456 (1115)
..+.++++++++. +++| +.|++|++||+ +++. +....
T Consensus 221 -------------------------------------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 221 -------------------------------------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp -------------------------------------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred -------------------------------------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 1245677888887 5677 68999999999 5543 44443
Q ss_pred -cCCCcEEEEE--ecCCEEE-eeecccEEEEEeCC-Ccc-ccccccc--cCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 457 -YLPFAVQCLC--TFGSQIW-VGYMNGIVQVLDLE-GNL-LGGWVAH--SSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 457 -gH~~~V~sla--~dG~~La-SGs~DGtIrlWD~~-G~l-l~~l~gH--~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
.|...|.+++ ++|++|+ +|+.||+|++||+. ++. +..+..| .+.|.++++ ++.+++ +.|+.+|+|++.
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~--s~~~~~~~~~l~ 341 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV--NKCEIARFYKLH 341 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG--GGTEEEEEEEEE
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccce--ecceeEEEEEcC
Confidence 5677888887 6899886 56679999999987 553 5566555 489999986 455554 467799999987
Q ss_pred C
Q 001245 527 S 527 (1115)
Q Consensus 527 ~ 527 (1115)
+
T Consensus 342 ~ 342 (402)
T 2aq5_A 342 E 342 (402)
T ss_dssp T
T ss_pred C
Confidence 5
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-27 Score=288.50 Aligned_cols=237 Identities=13% Similarity=-0.029 Sum_probs=170.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC------Cc-EEEEeCCCcEEEEeCCCc
Q 001245 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY------GD-LWSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 200 s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd------G~-L~SgS~DgtIrvWdl~t~ 272 (1115)
+|+++++||||.|++|++||++++.+ ......++.+|.+.|++|+|+|+ +. |+|||.||+|||||+.++
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~----~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTL----HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp ------------CEEEEEEEEETTTC----CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred chhhhhhccCCCCceEEEEEccCCCC----CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 56778899999999999999986432 01112456789999999999997 34 789999999999999765
Q ss_pred ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccE-EEEEec
Q 001245 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTREL-LKVFNI 350 (1115)
Q Consensus 273 ~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~l-l~tl~~ 350 (1115)
.+... ..+........+.+|. ..+.++++++++ .|++++ |++|+|||++++.. ..+
T Consensus 246 ~~~~~--------~~~~~~~p~~~l~~h~----------~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~--- 303 (524)
T 2j04_B 246 ATDVH--------VFKMCEKPSLTLSLAD----------SLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFY--- 303 (524)
T ss_dssp SSSSS--------EEECCCSCSEEECCTT----------TCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEE---
T ss_pred ccccc--------cceeecCceEEEEcCC----------CCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEE---
Confidence 32100 0000000011233443 678888887754 666665 79999999876421 111
Q ss_pred CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEE--EEc
Q 001245 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEAL--TTS 428 (1115)
Q Consensus 351 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aV--a~S 428 (1115)
+.+|...|.+| +++
T Consensus 304 ----------------------------------------------------------------~~~H~~~V~sv~~~~s 319 (524)
T 2j04_B 304 ----------------------------------------------------------------DQVHDSYILSVSTAYS 319 (524)
T ss_dssp ----------------------------------------------------------------EECSSSCEEEEEEECC
T ss_pred ----------------------------------------------------------------eecccccEEEEEEEcC
Confidence 23456677887 578
Q ss_pred CCC-c-EEEEeCCCeEEEEcC-CCCeeEEeecCCC--cEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCC
Q 001245 429 IDG-M-IWTGGANGLLLQWDP-NGNRLQDFQYLPF--AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSP 500 (1115)
Q Consensus 429 ~Dg-~-laSGS~DgtIklWD~-tG~~l~tl~gH~~--~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~ 500 (1115)
++| . |||||.|++|||||+ +++++.++.+|.. .|++|+ |+|+.|++|+.|++|+|||+. +.++.++.+|.+.
T Consensus 320 ~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~ 399 (524)
T 2j04_B 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT 399 (524)
T ss_dssp TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSC
T ss_pred CCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCc
Confidence 887 5 799999999999999 8888888888864 477777 789999999999999999987 7888899999999
Q ss_pred EEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 501 VIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 501 V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
|++|++ +|++|+|||.|++||+||+.
T Consensus 400 V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 400 ITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred eEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 999995 78899999999999999964
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=4.2e-26 Score=261.32 Aligned_cols=236 Identities=10% Similarity=0.043 Sum_probs=184.9
Q ss_pred eccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC-CCc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg-~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp-dG~-L~SgS~DgtI 264 (1115)
.| ...|.|++|+|++ ++||+|+.||+|++||+.++.. .....+.+|.+.|++++|+| ++. |++|+.|++|
T Consensus 71 ~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 71 PF-DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK------TSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp CC-SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC------EEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred CC-CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc------ceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 35 7899999999999 9999999999999999986421 12223358999999999999 555 7899999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCcc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRE 343 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ 343 (1115)
++||+.+.... . +....+| ...+.++++++++..+++++ +++|++||+ +++
T Consensus 144 ~iwd~~~~~~~-~----------------~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~ 195 (383)
T 3ei3_B 144 TLRDFSGSVIQ-V----------------FAKTDSW----------DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGH 195 (383)
T ss_dssp EEEETTSCEEE-E----------------EECCCCS----------SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSC
T ss_pred EEEECCCCceE-E----------------EeccCCC----------CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCC
Confidence 99999752211 0 0111111 25688899999999998876 689999998 455
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
.+.++. +|...|.
T Consensus 196 ~~~~~~-------------------------------------------------------------------~h~~~v~ 208 (383)
T 3ei3_B 196 EIFKEK-------------------------------------------------------------------LHKAKVT 208 (383)
T ss_dssp EEEEEE-------------------------------------------------------------------CSSSCEE
T ss_pred EEEEec-------------------------------------------------------------------cCCCcEE
Confidence 444332 3445678
Q ss_pred EEEEcCCCc--EEEEeCCCeEEEEcC-C----CCeeEEeecCCCcEEEEE--e-cCCEEEeeecccEEEEEeCC-Ccccc
Q 001245 424 ALTTSIDGM--IWTGGANGLLLQWDP-N----GNRLQDFQYLPFAVQCLC--T-FGSQIWVGYMNGIVQVLDLE-GNLLG 492 (1115)
Q Consensus 424 aVa~S~Dg~--laSGS~DgtIklWD~-t----G~~l~tl~gH~~~V~sla--~-dG~~LaSGs~DGtIrlWD~~-G~ll~ 492 (1115)
+++++|++. +++|+.|++|++||+ + +.++.++ +|...|++++ + +|++|++|+.||+|++||+. ++++.
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 889999985 789999999999999 5 6677777 7999999999 6 89999999999999999987 77778
Q ss_pred cccccc-----------------CCEEEEE--ecCCEEEeecCCCceEEeeecCC
Q 001245 493 GWVAHS-----------------SPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 493 ~l~gH~-----------------~~V~sva--~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.+.+|. +.+..++ ++|++ +++.|++|++||+.+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG 340 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence 887775 3344454 46766 8999999999998764
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=1.9e-26 Score=264.06 Aligned_cols=262 Identities=15% Similarity=0.164 Sum_probs=196.9
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC----C---c-EEEEe
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY----G---D-LWSGS 259 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd----G---~-L~SgS 259 (1115)
.| .++|.|++|+| ++|++|+.||+|++||+.++.. .........+.+|..+|++|+|+|+ | . |++|+
T Consensus 14 ~h-~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 14 AH-DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN--ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp CS-SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT--CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hh-hcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc--ccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 45 78999999998 8999999999999999986431 1112357788999999999999999 8 7 78999
Q ss_pred CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEe----CCCCE-EEeec-CCe
Q 001245 260 EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAK-VWSAG-FLS 333 (1115)
Q Consensus 260 ~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~----~~~~~-v~S~s-d~t 333 (1115)
.|++|++||+.+++... ... ...+.+|... .....+.++++. +++.. +++++ ++.
T Consensus 89 ~dg~i~iw~~~~~~~~~------~~~--------~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~ 149 (397)
T 1sq9_A 89 FSGDLLFYRITREDETK------KVI--------FEKLDLLDSD-----MKKHSFWALKWGASNDRLLSHRLVATDVKGT 149 (397)
T ss_dssp TTSCEEEEEEEECTTTC------CEE--------EEEECCSCTT-----GGGSCEEEEEEECCC----CEEEEEEETTSC
T ss_pred CCCCEEEEEccCCcccc------ccc--------ceeecccccc-----cCCCcEEEEEEeeccCCCCceEEEEEeCCCc
Confidence 99999999997754310 000 0112223100 002568888888 88888 87765 689
Q ss_pred EEEEEcCC------ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEE
Q 001245 334 FALWDART------RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR 407 (1115)
Q Consensus 334 I~lWD~~t------g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~ 407 (1115)
|++||+.+ ++.+. + . +.. .+.+.
T Consensus 150 i~iwd~~~~~~~~~~~~~~-~------------~-------------------------------~~~--~~~~~----- 178 (397)
T 1sq9_A 150 TYIWKFHPFADESNSLTLN-W------------S-------------------------------PTL--ELQGT----- 178 (397)
T ss_dssp EEEEEEESSSSHHHHTTTC-C------------C-------------------------------CEE--EEEEE-----
T ss_pred EEEEeCCccccccccceee-c------------c-------------------------------Ccc--eeeee-----
Confidence 99999876 33221 0 0 000 00000
Q ss_pred EEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeec---C---CCcEEEEE--ecCCEEEeeecc
Q 001245 408 RVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY---L---PFAVQCLC--TFGSQIWVGYMN 478 (1115)
Q Consensus 408 ~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~g---H---~~~V~sla--~dG~~LaSGs~D 478 (1115)
......|...|.+++++|++.+++|+.|++|++||+ +++++..+.+ | ...|.+++ ++|++|++|+.|
T Consensus 179 ----~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 179 ----VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp ----ECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred ----eccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 000123566788999999996689999999999999 7999999999 9 99999999 689999999999
Q ss_pred ---cEEEEEeCC-Ccccccccc-------------ccCCEEEEEe--cCCEEEeecCCCceEEeeecCC
Q 001245 479 ---GIVQVLDLE-GNLLGGWVA-------------HSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 479 ---GtIrlWD~~-G~ll~~l~g-------------H~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
|+|++||+. ++++..+.+ |...|.++++ ++++|++++.|++|++||+.+.
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999986 888999999 9999999986 6899999999999999998763
No 92
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2.4e-27 Score=275.38 Aligned_cols=258 Identities=9% Similarity=-0.032 Sum_probs=162.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC--------CCc-EEEEeCCCcE
Q 001245 194 VMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS--------YGD-LWSGSEGGGI 264 (1115)
Q Consensus 194 V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp--------dG~-L~SgS~DgtI 264 (1115)
+....+++++.+||||+.|++||+||+.++.+. .......+.||.+.|++|+|+| ||+ |+|||.|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~---~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETII---TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEE---EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccc---eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 344555667889999999999999999864220 0011234689999999999998 777 7999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR 342 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg 342 (1115)
||||+.++.+.. .+.+|. ..+.++++.+++. .+++++ |++|+|||++++
T Consensus 169 ~~Wd~~~~~~~~-------------------~~~~~~----------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 169 IIWRLTDEGPIL-------------------AGYPLS----------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp EEEEEETTEEEE-------------------EEEECS----------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred EEEECCCCceee-------------------eecCCC----------CCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence 999997654331 112233 5778889988764 577765 789999999998
Q ss_pred cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCce
Q 001245 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1115)
Q Consensus 343 ~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V 422 (1115)
+....+..+........ + ...... .. ......+|...+
T Consensus 220 ~~~~~~~~~~~~~~~~~-----------------~------------s~~~~~--~~-----------~~~~~~~~~~~v 257 (393)
T 4gq1_A 220 LSAEENSQTELVKNPWL-----------------L------------TLNTLP--LV-----------NTCHSSGIASSL 257 (393)
T ss_dssp C----------CSCCCS-----------------E------------EEESGG--GC-----------------CCSSSC
T ss_pred cccccccccCCcccceE-----------------E------------eccccc--ce-----------eeeecccccccc
Confidence 87655432211100000 0 000000 00 001123566778
Q ss_pred EEEEEc-CCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE----------------------ecCCEEEeeec
Q 001245 423 EALTTS-IDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC----------------------TFGSQIWVGYM 477 (1115)
Q Consensus 423 ~aVa~S-~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla----------------------~dG~~LaSGs~ 477 (1115)
.+++++ +||. |++++.|++|++||+ .++....+..|...+..+. .++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 888865 7876 899999999999999 7777777777766655443 13557889999
Q ss_pred ccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 478 NGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 478 DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
||+|+|||+. |+++..+.+|..+|.+|++ ||++||+++.|| +.+|.+.
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 9999999987 8888889999999999995 899999998765 6666654
No 93
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=1.4e-25 Score=282.20 Aligned_cols=274 Identities=15% Similarity=0.137 Sum_probs=219.2
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKI 266 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrv 266 (1115)
.| .++|.|++|+|+|.+||+|+.||+|++||+.++ +...++.+|.++|++++|+|+|+ |++|+.||+|++
T Consensus 11 ~h-~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 11 NR-SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp EE-CSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cC-CCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 56 889999999999999999999999999999863 45678899999999999999998 799999999999
Q ss_pred EeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCc-cE
Q 001245 267 WPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTR-EL 344 (1115)
Q Consensus 267 Wdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg-~l 344 (1115)
||+.+++... .+.+|. ..+.++++++++..+++++ +++|++||+.++ .+
T Consensus 82 w~~~~~~~~~-------------------~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 132 (814)
T 3mkq_A 82 FNYNTGEKVV-------------------DFEAHP----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132 (814)
T ss_dssp EETTTCCEEE-------------------EEECCS----------SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred EECCCCcEEE-------------------EEecCC----------CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE
Confidence 9998875542 123343 6788999999998888876 689999999987 66
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-c----ccc-c
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-G----GFG-D 417 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-g----~l~-~ 417 (1115)
..++.+|...+..+.++|. ++..+++++.+ .++.|+.. + .+. .
T Consensus 133 ~~~~~~~~~~v~~~~~~p~------------------------------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 182 (814)
T 3mkq_A 133 EQTFEGHEHFVMCVAFNPK------------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182 (814)
T ss_dssp EEEEECCSSCEEEEEEETT------------------------------EEEEEEEEETTSEEEEEETTCSSCSEEEECC
T ss_pred EEEEcCCCCcEEEEEEEcC------------------------------CCCEEEEEeCCCeEEEEECCCCcceeEEecC
Confidence 7777666655444444331 33445555554 45566542 1 122 2
Q ss_pred CCCceEEEEEcC--CCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccc
Q 001245 418 DNRRTEALTTSI--DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNL 490 (1115)
Q Consensus 418 h~~~V~aVa~S~--Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~l 490 (1115)
+...+.+++++| ++. +++|+.||+|++||+ +++++.++.+|...|.+++ ++|++|++|+.||+|++||+. +++
T Consensus 183 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 337789999998 776 899999999999999 8999999999999999998 789999999999999999987 889
Q ss_pred ccccccccCCEEEEEe--cCCE-EEeecCCCceEEeeecCCC
Q 001245 491 LGGWVAHSSPVIKMAV--GAGY-IFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~--dg~~-laSgS~DgtIRlWdl~~p~ 529 (1115)
+..+..|...|+++++ +|+. +++++.|+.+.+|++....
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 9999999999999985 4542 3455557789999986543
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=2.1e-25 Score=280.44 Aligned_cols=307 Identities=14% Similarity=0.139 Sum_probs=227.8
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++.+++ +.|++|+|||+.++..... ...| .++|.+++|+|++++|+
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~-~~~v~~~~~s~~~~~l~ 71 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-------------------IQVT-ETPVRAGKFIARKNWII 71 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-------------------EECC-SSCEEEEEEEGGGTEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-------------------EecC-CCcEEEEEEeCCCCEEE
Confidence 34456666766 344444 5789999999998876543 1245 78999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
+|+.||+|++||+.++ +...++.+|.+.|++++|+|+|. |++|+.||+|++||++++....
T Consensus 72 ~~~~dg~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~---------- 133 (814)
T 3mkq_A 72 VGSDDFRIRVFNYNTG--------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE---------- 133 (814)
T ss_dssp EEETTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEE----------
T ss_pred EEeCCCeEEEEECCCC--------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEE----------
Confidence 9999999999999873 45678899999999999999997 8999999999999997652210
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcCCccEEEEEecCC-ceeeEEeccCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNIDG-QIENRVDMSLL 363 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~-~~~~~v~~s~~ 363 (1115)
..+.+|. ..+.++++++ ++..+++++ +++|++||+.+++....+..+. ..+.
T Consensus 134 --------~~~~~~~----------~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~------- 188 (814)
T 3mkq_A 134 --------QTFEGHE----------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN------- 188 (814)
T ss_dssp --------EEEECCS----------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCC-------
T ss_pred --------EEEcCCC----------CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEE-------
Confidence 1122343 5688888888 666777765 7899999999887766654322 2222
Q ss_pred CCccccccceEEEEecCCCCccceeeeeec--cccceEEeccCc-EEEEecc-----cccccCCCceEEEEEcCCCc-EE
Q 001245 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ--RSRNAIMGAADA-VRRVAAK-----GGFGDDNRRTEALTTSIDGM-IW 434 (1115)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~--~~~~~~~Gs~d~-v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~-la 434 (1115)
.+.+.+ ++..+++|..++ ++.|+.. ..+.+|...|.+++++|++. ++
T Consensus 189 ------------------------~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 189 ------------------------YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp ------------------------EEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred ------------------------EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 233443 445566666554 5666542 23556888999999999997 79
Q ss_pred EEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCC--EEEeeecccEEEEEeCC-C----------ccc-------
Q 001245 435 TGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGS--QIWVGYMNGIVQVLDLE-G----------NLL------- 491 (1115)
Q Consensus 435 SGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~--~LaSGs~DGtIrlWD~~-G----------~ll------- 491 (1115)
+|+.||+|++||+ ++++++++..|...|++++ ++|+ ++++|+ |+.+.+|++. + +.+
T Consensus 245 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA 323 (814)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred EEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence 9999999999999 7999999999999999999 6776 455555 5567888753 1 111
Q ss_pred --------------------------cccccccCCEEEEEe--cCCEEEeecCCCceEEeeec
Q 001245 492 --------------------------GGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 492 --------------------------~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~ 526 (1115)
..+..|...+.++++ +|+++++++ |+.+++|++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred cceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 112345556777774 889999988 8999999964
No 95
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.95 E-value=4.9e-26 Score=264.93 Aligned_cols=305 Identities=13% Similarity=0.123 Sum_probs=204.3
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCc-eeeeccC------------Cce
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGV------------SSV 194 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~-~~s~~G~------------~~V 194 (1115)
....+..++.+ ++++++ +.|+.|+|||+.++..... .+. .+.... ....| . .+|
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-------~~~--~~~~~~~~~~~h-~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-------HSR--GEYNVYSTFQSH-EPEFDYLKSLEIEEKI 96 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-------CCC--CCEEEEEEEECC-CCEEEGGGTEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-------ccc--cceeEecccccc-cccccccccccccCce
Confidence 34567777777 444554 5799999999987763110 000 000000 11133 4 789
Q ss_pred EEEEEcCCC--CEEEEEeCCCeEEEEECCCCCCC-------C----------CCCC--------------cceEE-eecC
Q 001245 195 MCMVGDEAS--GVVWSGHRDGRIMCWKMNARLLD-------S----------DDGF--------------GEVLS-WQAH 240 (1115)
Q Consensus 195 ~~la~s~dg--~~LaSGS~DgtIrlWdl~~~~~~-------~----------~~~~--------------~~~~~-l~GH 240 (1115)
.+++|+|++ ..|++|+.||+|++||+.++... . .... ..... +.+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 89999999999999998652110 0 0000 00112 3689
Q ss_pred CCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE
Q 001245 241 RGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (1115)
Q Consensus 241 ~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las 319 (1115)
.+.|++|+|+|+|+ |+|| .|++|++||+++....+.. + ......+.+|. ..+.++++
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~----------~-~~~~~~~~~~~----------~~v~~~~~ 234 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNI----------V-DIKPANMEELT----------EVITAAEF 234 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEE----------E-ECCCSSGGGCC----------CCEEEEEE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeee----------e-ecccccccccC----------cceEEEEE
Confidence 99999999999998 6787 7999999999853222110 0 00000123343 67889999
Q ss_pred eCCC-CEEEeec-CCeEEEEEcCCccE----EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeec
Q 001245 320 DHSR-AKVWSAG-FLSFALWDARTREL----LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ 393 (1115)
Q Consensus 320 ~~~~-~~v~S~s-d~tI~lWD~~tg~l----l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~ 393 (1115)
++++ ..+++++ |++|++||++++++ ++++..+...
T Consensus 235 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------------------------- 275 (447)
T 3dw8_B 235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDP--------------------------------------- 275 (447)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC------------------------------------------
T ss_pred CCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCc---------------------------------------
Confidence 9987 7888776 68999999998875 4444322211
Q ss_pred cccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-C-CCeeEEeecCCCcE--------
Q 001245 394 RSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAV-------- 462 (1115)
Q Consensus 394 ~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-t-G~~l~tl~gH~~~V-------- 462 (1115)
.....+.+|...|.+++++|+|. |++|+. ++|++||+ + ++++.++.+|...+
T Consensus 276 ----------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 276 ----------------SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp ------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ----------------cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 00012345667899999999998 678888 99999999 5 89999999996422
Q ss_pred ---------EEEEecCCEEEeeecccEEEEEeCC-Cccccccccc---------------------------------cC
Q 001245 463 ---------QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH---------------------------------SS 499 (1115)
Q Consensus 463 ---------~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH---------------------------------~~ 499 (1115)
.++.++|++|++|+.||+|++||+. ++.+ .+.+| ..
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK 417 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCC
Confidence 2333899999999999999999987 4432 43333 45
Q ss_pred CEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 500 PVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 500 ~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
.|+++++ ++.+||+++.|+ +.+|..
T Consensus 418 ~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 418 KILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ceeEEEECCCCCEEEEEecce-eeeecc
Confidence 6778874 788999998876 788863
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.6e-25 Score=241.68 Aligned_cols=269 Identities=17% Similarity=0.245 Sum_probs=197.4
Q ss_pred ceeeEEEEEeCC-eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 132 GCFLRTIVCTEE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 132 ~~~l~~l~~~~~-~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
...+..++..++ .|++ +.|++|++||+.++..... ...| ..+|.+++|+|++.+|++|
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~-~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTV-------------------VYTG-QGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEE-------------------EEEC-SSCEEEEEEETTTTEEEEE
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEE-------------------eecC-CccEEEEEECCCCCEEEEe
Confidence 344555555544 4444 6899999999987765442 2245 7899999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
+.||+|++|++.... ..+....+.+|.++|++++|++ ..|++|+.|++|++||. ....
T Consensus 78 ~~dg~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~~~d~--~~~~-------------- 135 (313)
T 3odt_A 78 GKDTMINGVPLFATS-----GEDPLYTLIGHQGNVCSLSFQD-GVVISGSWDKTAKVWKE--GSLV-------------- 135 (313)
T ss_dssp ETTSCEEEEETTCCT-----TSCC-CEECCCSSCEEEEEEET-TEEEEEETTSEEEEEET--TEEE--------------
T ss_pred cCCCeEEEEEeeecC-----CCCcccchhhcccCEEEEEecC-CEEEEEeCCCCEEEEcC--CcEE--------------
Confidence 999999999987521 1244567899999999999943 34899999999999993 2221
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcCCccEEEEEec-CCceeeEEeccCCCCc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDF 366 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~-~~~~~~~v~~s~~~~~ 366 (1115)
..+..|. ..+.++++.+ ++..+++++ +++|++|| .++.+..+.. +...+
T Consensus 136 -----~~~~~~~----------~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i----------- 187 (313)
T 3odt_A 136 -----YNLQAHN----------ASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV----------- 187 (313)
T ss_dssp -----EEEECCS----------SCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE-----------
T ss_pred -----EecccCC----------CceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccE-----------
Confidence 1112233 4566666655 667777765 68999999 5566666643 33222
Q ss_pred cccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-----cccccCCCceEEEEEcCCCcEEEEeCCC
Q 001245 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-----GGFGDDNRRTEALTTSIDGMIWTGGANG 440 (1115)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-----g~l~~h~~~V~aVa~S~Dg~laSGS~Dg 440 (1115)
..+.+.+++. +++++.+ .++.|+.. ..+.+|...|.+++++|++.+++|+.||
T Consensus 188 --------------------~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg 246 (313)
T 3odt_A 188 --------------------RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDR 246 (313)
T ss_dssp --------------------EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTS
T ss_pred --------------------EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCC
Confidence 2344555555 4555544 46666653 2455788999999999999999999999
Q ss_pred eEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccc
Q 001245 441 LLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG 492 (1115)
Q Consensus 441 tIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~ 492 (1115)
+|++||+ ++++++++..|...|++++ ++|+ +++|+.||+|++||++ ++.+.
T Consensus 247 ~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 247 TVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 9999999 8999999999999999999 5777 6679999999999987 55443
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-24 Score=244.57 Aligned_cols=281 Identities=13% Similarity=0.096 Sum_probs=206.1
Q ss_pred cceeeEEEEEe-CCe-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
+...+..++.+ ++. |++ +.|+.|++||+.++..... ...| ..+|.+++|+|++++|+
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h-~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-------------------LDGH-TGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE-------------------ECCC-SSCEEEEEECTTSSEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh-------------------hhhc-CCcEEEEEEcCCCCEEE
Confidence 33445556665 333 444 5799999999998876543 1245 78999999999999999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCC-----CcEEEEeCCCcceeeccCCC
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-----GGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~D-----gtIrvWdl~t~~~~l~~~~~ 281 (1115)
+|+.||+|++||+.++ +....+. |..+|.+++|+|+|. |++++.| ++|++||+.+......+...
T Consensus 91 s~~~dg~i~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNG--------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EEETTTEEEEEETTTC--------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EEeCCCeEEEEECCCC--------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 9999999999999873 3345555 899999999999998 7888888 99999999765332111000
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCC-ccEEEEEecCCceeeEEe
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDART-RELLKVFNIDGQIENRVD 359 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~t-g~ll~tl~~~~~~~~~v~ 359 (1115)
. ......+..|. ....+.++++++++..+++++ ++.|++||+++ ++.+..+..+...+..+.
T Consensus 162 ~--------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 225 (369)
T 3zwl_B 162 S--------EEPIHKIITHE--------GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQ 225 (369)
T ss_dssp C--------SSCSEEEECCT--------TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEE
T ss_pred c--------cceeeeccCCc--------CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEE
Confidence 0 00000111121 012678888988888888765 68999999999 788888776555444444
Q ss_pred ccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-cc---cccCCCceEEEEEcCCCc-E
Q 001245 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-GG---FGDDNRRTEALTTSIDGM-I 433 (1115)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-g~---l~~h~~~V~aVa~S~Dg~-l 433 (1115)
|++++..+++++.+ .++.|+.. +. ...+...+.+++++|++. +
T Consensus 226 -------------------------------~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 274 (369)
T 3zwl_B 226 -------------------------------FSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFI 274 (369)
T ss_dssp -------------------------------ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred -------------------------------ECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceE
Confidence 44444455555544 45556542 11 122566788999999998 7
Q ss_pred EEEeCCC--------------eEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 434 WTGGANG--------------LLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 434 aSGS~Dg--------------tIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
++|+.++ .|++||. +++++..+.+|...|++++ ++|++|++|+.||+|++||++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 8888888 8999999 8999999999999999999 689999999999999999987
No 98
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-25 Score=259.38 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=195.6
Q ss_pred ceeeEEEEEeC--CeEEE--eCCCCEEEEeCCC---CcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCC
Q 001245 132 GCFLRTIVCTE--EQLWA--GGENGLRVWNLKE---LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG 204 (1115)
Q Consensus 132 ~~~l~~l~~~~--~~l~a--g~D~tvrvWdl~t---g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~ 204 (1115)
...+..++.+. +.+++ +.|++|+|||+.+ +....+ .....| ..+|.|++|+|++.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h-~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDC-SSTVTQITMIPNFD 124 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEEC-SSCEEEEEECTTSS
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce-----------------eeeccC-CCCEEEEEEeCCCC
Confidence 34566777765 44544 5899999999887 332211 111135 78999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeec------------CCCCEEEEE--EeCCCc-EEEEeCCCcEEEEeC
Q 001245 205 VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA------------HRGPVLSLC--ISSYGD-LWSGSEGGGIKIWPW 269 (1115)
Q Consensus 205 ~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G------------H~~~V~sVa--fSpdG~-L~SgS~DgtIrvWdl 269 (1115)
+|+||+.||+|++||++... . .+....+.+ |...+.+++ +++++. |++|+.|++|++||+
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~--~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQ--Q---ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEE--E---TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred EEEEEeCCCEEEEEEecccc--C---CceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999995210 0 011222222 566777777 557776 789999999999999
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecc--cceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRS--HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~--h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
.++++... +.+ |. ..+.++++++++..+++++ |++|++||++++++++
T Consensus 200 ~~~~~~~~-------------------~~~~~h~----------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 200 RTLERLQI-------------------IENSPRH----------GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp TTCCEEEE-------------------EECCGGG----------CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCCeeeEE-------------------EccCCCC----------CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 88655421 122 33 6788999999999898876 6899999999999999
Q ss_pred EEe-cCCceeeEEeccCC----CCc--cccccceEEEEecCCCCccc---------eeeeeeccccceEEeccCcEEEEe
Q 001245 347 VFN-IDGQIENRVDMSLL----PDF--AMEDEFKTKIVTSSKKDKAQ---------SSFGFFQRSRNAIMGAADAVRRVA 410 (1115)
Q Consensus 347 tl~-~~~~~~~~v~~s~~----~~~--~~~~~~~~~~~~~~~~~~~~---------~~v~f~~~~~~~~~Gs~d~v~~~~ 410 (1115)
++. .+...+..+.+++. ... ....+..+++|......... ..+.|.+.+..+
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------ 318 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL------------ 318 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG------------
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc------------
Confidence 986 45555666644442 111 11223334444432111000 000011100000
Q ss_pred ccccccc--CCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeec------------------------------
Q 001245 411 AKGGFGD--DNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQY------------------------------ 457 (1115)
Q Consensus 411 ~~g~l~~--h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~g------------------------------ 457 (1115)
....+.+ |...|.+++++++..|++|+.|++|++||+ ++++++++.+
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTH 398 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----
T ss_pred ccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEeccccccc
Confidence 0112334 777899999994445899999999999999 8888888776
Q ss_pred -------CCCcEEEEE--ec--CCEEEeeecccEEEEEe
Q 001245 458 -------LPFAVQCLC--TF--GSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 458 -------H~~~V~sla--~d--G~~LaSGs~DGtIrlWD 485 (1115)
|.+.|++|+ ++ +.+|+||+.||+|+||+
T Consensus 399 ~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 399 SVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 889999998 45 77999999999999995
No 99
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=5.1e-26 Score=255.94 Aligned_cols=239 Identities=13% Similarity=0.143 Sum_probs=191.1
Q ss_pred eccCCceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeec-----CCCCEEEEEEeCC----Cc
Q 001245 188 VKGVSSVMCMVGDEA----SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA-----HRGPVLSLCISSY----GD 254 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d----g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G-----H~~~V~sVafSpd----G~ 254 (1115)
.| .++|.|++|+|+ ...+++++.|++|++||+.++ +....+++ |.+.|++++|+|+ |.
T Consensus 16 ~h-~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 86 (366)
T 3k26_A 16 DH-NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--------GEIRLLQSYVDADADENFYTCAWTYDSNTSHP 86 (366)
T ss_dssp TT-CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--------GCEEEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred CC-CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--------cEEEeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence 45 789999999983 556677777779999999853 22334443 6688999999999 55
Q ss_pred -EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-C
Q 001245 255 -LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-F 331 (1115)
Q Consensus 255 -L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d 331 (1115)
|++|+.||+|++||+.+++... .+.+|. ..+.++++++ ++..+++++ |
T Consensus 87 ~l~~~~~dg~i~v~d~~~~~~~~-------------------~~~~~~----------~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 87 LLAVAGSRGIIRIINPITMQCIK-------------------HYVGHG----------NAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp EEEEEETTCEEEEECTTTCCEEE-------------------EEESCC----------SCEEEEEECSSCTTEEEEEETT
T ss_pred EEEEecCCCEEEEEEchhceEee-------------------eecCCC----------CcEEEEEECCCCCCEEEEEeCC
Confidence 7899999999999998765431 123343 6788999998 788888876 6
Q ss_pred CeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEec
Q 001245 332 LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (1115)
Q Consensus 332 ~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~ 411 (1115)
++|++||+++++.+..+..
T Consensus 138 g~i~iwd~~~~~~~~~~~~------------------------------------------------------------- 156 (366)
T 3k26_A 138 HALRLWNIQTDTLVAIFGG------------------------------------------------------------- 156 (366)
T ss_dssp SCEEEEETTTTEEEEEECS-------------------------------------------------------------
T ss_pred CeEEEEEeecCeEEEEecc-------------------------------------------------------------
Confidence 8999999998887655410
Q ss_pred ccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeec----------------------------CCCc
Q 001245 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----------------------------LPFA 461 (1115)
Q Consensus 412 ~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~g----------------------------H~~~ 461 (1115)
+.+|...|.+++++|++. +++|+.||+|++||+ ++++++.+.. |...
T Consensus 157 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 157 ---VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp ---TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred ---cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 224556788899999986 899999999999999 6665554443 9999
Q ss_pred EEEEEecCCEEEeeecccEEEEEeCC-Cc--------------cccccccccCCEEEEE--ec--CCEEEeecCCCceEE
Q 001245 462 VQCLCTFGSQIWVGYMNGIVQVLDLE-GN--------------LLGGWVAHSSPVIKMA--VG--AGYIFTLANHGGIRG 522 (1115)
Q Consensus 462 V~sla~dG~~LaSGs~DGtIrlWD~~-G~--------------ll~~l~gH~~~V~sva--~d--g~~laSgS~DgtIRl 522 (1115)
|.+++.+|++|++|+.||+|++||+. ++ ++..+.+|...|++++ ++ |++|++|+.||+|++
T Consensus 234 v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~v 313 (366)
T 3k26_A 234 VDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYV 313 (366)
T ss_dssp CCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEE
T ss_pred EEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEE
Confidence 99999889999999999999999975 33 3778889999999887 46 999999999999999
Q ss_pred eeecCC
Q 001245 523 WNVTSP 528 (1115)
Q Consensus 523 Wdl~~p 528 (1115)
||+...
T Consensus 314 wd~~~~ 319 (366)
T 3k26_A 314 WDLEVE 319 (366)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 998764
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-26 Score=287.42 Aligned_cols=241 Identities=12% Similarity=0.058 Sum_probs=190.5
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGI 264 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtI 264 (1115)
+| .++|+|++|+|+|++|+||+.||+|++||+.++. .....++.+|.++|++|+|+|+ |. |+||+.||+|
T Consensus 7 gH-~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 7 AH-NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp -C-CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred cC-cceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 56 8899999999999999999999999999997422 2456688999999999999988 76 7999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC--CCEEEeec-CCeEEEEEcCC
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS--RAKVWSAG-FLSFALWDART 341 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~--~~~v~S~s-d~tI~lWD~~t 341 (1115)
++||+.++.... ...+.+|. ..+.+++++++ +..+++++ +++|++||+++
T Consensus 80 ~vwd~~~~~~~~-----------------~~~~~~h~----------~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 80 LIWKEENGRWSQ-----------------IAVHAVHS----------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp EEEEEETTEEEE-----------------EEEECCCS----------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred EEEECCCCcccc-----------------cccccCCC----------CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 999997754210 01123343 67889999988 78888876 68999999987
Q ss_pred ccEE--EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC
Q 001245 342 RELL--KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1115)
Q Consensus 342 g~ll--~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~ 419 (1115)
+... ..+.. |.
T Consensus 133 ~~~~~~~~~~~-------------------------------------------------------------------~~ 145 (753)
T 3jro_A 133 NGTTSPIIIDA-------------------------------------------------------------------HA 145 (753)
T ss_dssp SSCCCCEEEEC-------------------------------------------------------------------CS
T ss_pred CCCcceeEeec-------------------------------------------------------------------CC
Confidence 6322 11222 22
Q ss_pred CceEEEEEcC-------------CCc-EEEEeCCCeEEEEcC-CC----CeeEEeecCCCcEEEEE--ec---CCEEEee
Q 001245 420 RRTEALTTSI-------------DGM-IWTGGANGLLLQWDP-NG----NRLQDFQYLPFAVQCLC--TF---GSQIWVG 475 (1115)
Q Consensus 420 ~~V~aVa~S~-------------Dg~-laSGS~DgtIklWD~-tG----~~l~tl~gH~~~V~sla--~d---G~~LaSG 475 (1115)
..|.+++++| ++. +++|+.||+|++||+ ++ .++.++.+|...|++++ |+ |++|++|
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 3344444444 444 899999999999999 55 56788899999999999 67 8999999
Q ss_pred ecccEEEEEeCC-Cc-----cccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecCCC
Q 001245 476 YMNGIVQVLDLE-GN-----LLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 476 s~DGtIrlWD~~-G~-----ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~p~ 529 (1115)
+.||+|++||+. ++ .+....+|.+.|+++++ +|+++++|+.||+|++|++.+.+
T Consensus 226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999986 32 45566789999999985 78999999999999999997643
No 101
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=250.25 Aligned_cols=242 Identities=18% Similarity=0.213 Sum_probs=181.4
Q ss_pred eccCCceEEEEEcCCCC-EEEEEeC---CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC---Cc-EEEEe
Q 001245 188 VKGVSSVMCMVGDEASG-VVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY---GD-LWSGS 259 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~-~LaSGS~---DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd---G~-L~SgS 259 (1115)
.| ..+|.+++|+|++. ++++|+. ||+|++||+.++.. ......+|.++|++++|+|+ |. |++|+
T Consensus 16 ~h-~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 16 GF-NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL-------KLLREIEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EC-SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE-------EEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred CC-CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc-------cceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence 46 78999999999985 6677877 99999999987321 11223489999999999998 45 89999
Q ss_pred CCCcEEEEeCCCcc-eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEE------EeCCCCEEEeec-C
Q 001245 260 EGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL------SDHSRAKVWSAG-F 331 (1115)
Q Consensus 260 ~DgtIrvWdl~t~~-~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~la------s~~~~~~v~S~s-d 331 (1115)
.||+|++||+.++. ... .+.+|. ..+.++. +++++..+++++ +
T Consensus 88 ~dg~i~iwd~~~~~~~~~-------------------~~~~~~----------~~v~~~~~~~~~~~s~~~~~l~~~~~d 138 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVY-------------------SVKGHK----------EIINAIDGIGGLGIGEGAPEIVTGSRD 138 (357)
T ss_dssp TTSCEEEECTTSCSSCSE-------------------EECCCS----------SCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred CCCeEEEEeCCCCCccEE-------------------EEEecc----------cceEEEeeccccccCCCccEEEEEeCC
Confidence 99999999998765 221 123343 4455553 356677787766 6
Q ss_pred CeEEEEEcCCcc-EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEe
Q 001245 332 LSFALWDARTRE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVA 410 (1115)
Q Consensus 332 ~tI~lWD~~tg~-ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~ 410 (1115)
++|++||+++++ .+..+..+..
T Consensus 139 ~~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------------------- 161 (357)
T 3i2n_A 139 GTVKVWDPRQKDDPVANMEPVQG--------------------------------------------------------- 161 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCTT---------------------------------------------------------
T ss_pred CeEEEEeCCCCCCcceeccccCC---------------------------------------------------------
Confidence 899999998876 4444422110
Q ss_pred cccccccCCCceEEEE----EcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--e---cCCEEEeeeccc
Q 001245 411 AKGGFGDDNRRTEALT----TSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--T---FGSQIWVGYMNG 479 (1115)
Q Consensus 411 ~~g~l~~h~~~V~aVa----~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~---dG~~LaSGs~DG 479 (1115)
.+...+.+++ +++++. +++|+.|++|++||+ ++++ .....|...|.+++ + +|.+|++|+.||
T Consensus 162 ------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 162 ------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 0012344444 677776 789999999999999 5555 45577899999999 5 899999999999
Q ss_pred EEEEEeCC-Cccccccc-----cccCCEEEEEe--cCC-EEEeecCCCceEEeeecCCCC
Q 001245 480 IVQVLDLE-GNLLGGWV-----AHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 480 tIrlWD~~-G~ll~~l~-----gH~~~V~sva~--dg~-~laSgS~DgtIRlWdl~~p~p 530 (1115)
+|++||+. ++.+..+. +|...|.++++ +++ ++++++.|++|++||+..+..
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 99999986 66666655 99999999986 556 799999999999999987544
No 102
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=3.5e-25 Score=250.44 Aligned_cols=271 Identities=11% Similarity=0.037 Sum_probs=197.0
Q ss_pred eEEEEEe-CCe-EEEe-CCCCEEEEeCCCCc--ccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 135 LRTIVCT-EEQ-LWAG-GENGLRVWNLKELY--DESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 135 l~~l~~~-~~~-l~ag-~D~tvrvWdl~tg~--~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
+..++.+ ++. ++++ .|++|++||+.++. .... ...| ..+|.+++|+|++++|++|
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h-~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEH-NGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE-------------------EECC-SSCEEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCC-CCcccEEEEeCCCCEEEEE
Confidence 3445554 333 4444 89999999998775 3321 1245 7899999999999999999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
+.||+|++||+.++.. .....+.+|...|++++|+|+|+ |++|+.|++|++||+++...... .
T Consensus 71 ~~dg~i~vwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-------~--- 134 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTW------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-------C--- 134 (372)
T ss_dssp ETTSCEEEEEEETTEE------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-------E---
T ss_pred cCCCeEEEEECCCCee------eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee-------e---
Confidence 9999999999976321 22344578999999999999997 78999999999999977532100 0
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcC------------------CccEEEEEe
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR------------------TRELLKVFN 349 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~------------------tg~ll~tl~ 349 (1115)
.....+|. ..+.++++.+++..+++++ +++|++||++ +++++..+.
T Consensus 135 -----~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 135 -----KHIKKPIR----------STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp -----EEECTTCC----------SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred -----eeeecccC----------CCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 00012232 6788999999888888876 7899999964 556666554
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-----cccccCCCceE
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-----GGFGDDNRRTE 423 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-----g~l~~h~~~V~ 423 (1115)
.+...+. .+.|.+++..+++++.++ ++.|+.. ..+..|...|.
T Consensus 200 ~~~~~v~-------------------------------~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 200 SSCGWVH-------------------------------GVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248 (372)
T ss_dssp CCSSCEE-------------------------------EEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred CCCCeEE-------------------------------EEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence 4433333 345555666666666654 6666653 23456778899
Q ss_pred EEEEcCCCcEEEEeCCCeEEEEcC-C--CC--ee------------------------------------EEe-ecCCCc
Q 001245 424 ALTTSIDGMIWTGGANGLLLQWDP-N--GN--RL------------------------------------QDF-QYLPFA 461 (1115)
Q Consensus 424 aVa~S~Dg~laSGS~DgtIklWD~-t--G~--~l------------------------------------~tl-~gH~~~ 461 (1115)
++++++++.+++++.|+.|++||+ + |+ ++ ..+ .+|...
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 999999999655559999999999 5 42 11 233 489999
Q ss_pred EEEEE---ecC---CEEEeeecccEEEEEeCC
Q 001245 462 VQCLC---TFG---SQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 462 V~sla---~dG---~~LaSGs~DGtIrlWD~~ 487 (1115)
|++++ ++| .+|+||+.||+|++||+.
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 99998 467 999999999999999985
No 103
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=6.2e-26 Score=257.28 Aligned_cols=163 Identities=11% Similarity=0.023 Sum_probs=114.6
Q ss_pred CCeEEEEEeC---CCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccce
Q 001245 312 SDIKNLLSDH---SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQS 387 (1115)
Q Consensus 312 ~~v~~las~~---~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1115)
..+..+++++ ++..|+|++ |++|||||++||+++++|.++...+. ...
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~----------------------------~v~ 230 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA----------------------------SVC 230 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C----------------------------CCE
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee----------------------------eeE
Confidence 3444455544 678899866 79999999999999999975432200 111
Q ss_pred eeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEe-----ecCCCc
Q 001245 388 SFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDF-----QYLPFA 461 (1115)
Q Consensus 388 ~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl-----~gH~~~ 461 (1115)
.++|++++..+++++.+.- .| .++||+.|++|++||. +|+++.++ .+|...
T Consensus 231 ~vafSpdG~~lvs~s~~~~-~w----------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~ 287 (356)
T 2w18_A 231 HKAYSEMGLLFIVLSHPCA-KE----------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR 287 (356)
T ss_dssp EEEEEETTEEEEEEC-----------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred EEEECCCCCEEEEeccCCC-cc----------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence 2345555444433321100 00 2689999999999999 88888876 478777
Q ss_pred EEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE-EE--ecCCEEEeecCCCceEEeee
Q 001245 462 VQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MA--VGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 462 V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s-va--~dg~~laSgS~DgtIRlWdl 525 (1115)
+.+...+|.++|+|+.||+|+|||+. |+++.++.+|.+.|.+ ++ +||++|+|||.|++|||||+
T Consensus 288 ~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 288 FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 77666779999999999999999997 9999999999987664 66 48999999999999999996
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.8e-26 Score=271.11 Aligned_cols=254 Identities=6% Similarity=-0.033 Sum_probs=195.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~ 270 (1115)
..+|.+|+|+|||++|||||.|+||| |... ..++.||.+.|.+|+|+|+| .|+++++|+.+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~-----------~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~ 75 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKY-----------AKDINCNSKNLFHVKEFPLE------FENKLDFELAQ 75 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECC-----------CSCCSSBGGGTEEEEEECCC------CCCTTTTSCCC
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccc-----------cceecCCCccEEEEEECCCC------CcceEEEEeCC
Confidence 45889999999999999999999999 7443 12347999999999999998 56666666654
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
... .+.+ .| ...|.+++++|++..|++++ +++|+|||..+ ++..+.
T Consensus 76 ~~~-~~~~--------------------~~----------~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~ 122 (588)
T 2j04_A 76 QNG-LLNS--------------------QP----------VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD 122 (588)
T ss_dssp SSC-SSTT--------------------SC----------SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC
T ss_pred Cce-Eeec--------------------CC----------CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc
Confidence 321 1110 11 25788999999999999876 78999999544 555554
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecccc------------c-
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAKGG------------F- 415 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~g~------------l- 415 (1115)
+...+ ......+++|+++++.+++|+.|+ ++.|+..+. +
T Consensus 123 -~~~~~--------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 123 -SKGNL--------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp -CSSCS--------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred -CCCcc--------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 22110 011234678888888888888765 667765422 1
Q ss_pred ---ccCCCceEEEEEcCCCcEEEEeCCCeEEEEcCC-CC---eeEEee-cCCCcEEEEEecCCEEEeeecccEEEEEeCC
Q 001245 416 ---GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPN-GN---RLQDFQ-YLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 416 ---~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~t-G~---~l~tl~-gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.+|..+|.+|+++||| +++++.|++|++||+. +. ..+++. +|...|.+|++.|++||+++ +++|++||+.
T Consensus 176 ~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETT
T ss_pred cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECC
Confidence 5677899999999999 9999999999999994 44 236774 88899999997689999998 6999999998
Q ss_pred Cccccccc-cccCCEEEEEe----cCCEEEeecCCCceEEeeec
Q 001245 488 GNLLGGWV-AHSSPVIKMAV----GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 488 G~ll~~l~-gH~~~V~sva~----dg~~laSgS~DgtIRlWdl~ 526 (1115)
++.+..+. ||.+.|.+|++ |++.+++++.||+ |+|...
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 65554444 99999999887 5678999999999 999973
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-24 Score=254.58 Aligned_cols=236 Identities=10% Similarity=0.091 Sum_probs=184.0
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCCCCCCCCCcceEEee--cCCCCEEEEEEeCCCc-EEEEeCCCcE
Q 001245 191 VSSVMCMVGDEASGVV-WSGHRDGRIMCWKMN--ARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~L-aSGS~DgtIrlWdl~--~~~~~~~~~~~~~~~l~--GH~~~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
.+.|.|++|+|+|++| |+|+.||+|++||+. ++ +....+. +|...|++|+|+|+|+ |++|+.||+|
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence 4579999999999996 999999999999998 53 3345554 6789999999999997 7899999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC---CCEEEeec-CCeEEEEEcC
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDAR 340 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~---~~~v~S~s-d~tI~lWD~~ 340 (1115)
++|++.++..... ....+.+|. ..+.+++++++ +..|++++ |++|+|||+.
T Consensus 174 ~~~~~~~~~~~~~---------------~~~~~~~h~----------~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 174 YSIDINSIPEEKF---------------TQEPILGHV----------SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp EEEETTSCCCSSC---------------CCCCSEECS----------SCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred EEEecCCcccccc---------------cceeeeccc----------CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 9999977543210 000122343 67888999888 77888776 6899999998
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCC
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~ 420 (1115)
+++++..+ +.+|..
T Consensus 229 ~~~~~~~~------------------------------------------------------------------~~~h~~ 242 (450)
T 2vdu_B 229 QCFIVDKW------------------------------------------------------------------LFGHKH 242 (450)
T ss_dssp CTTCEEEE------------------------------------------------------------------CCCCSS
T ss_pred CCceeeee------------------------------------------------------------------ecCCCC
Confidence 87765442 124556
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC-------------------------CCcEEEEE--ecCCE
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-------------------------PFAVQCLC--TFGSQ 471 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH-------------------------~~~V~sla--~dG~~ 471 (1115)
.|.+++|+ |+. |++|+.|++|++||+ +|++++++..| ...|.+|+ ++|++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 78889999 876 799999999999999 89999988743 35688888 68999
Q ss_pred EEeee-cccEEEEEeC--C-C---ccccccccccCCEEEEEecCC-EEEeec-C------CCceEEeeecC
Q 001245 472 IWVGY-MNGIVQVLDL--E-G---NLLGGWVAHSSPVIKMAVGAG-YIFTLA-N------HGGIRGWNVTS 527 (1115)
Q Consensus 472 LaSGs-~DGtIrlWD~--~-G---~ll~~l~gH~~~V~sva~dg~-~laSgS-~------DgtIRlWdl~~ 527 (1115)
|++++ .|++|+|||+ . + +++..+.+| +.|+++++.+. .+++.+ . +..|++|.+..
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999 8999999999 4 4 567888899 88999997543 444443 2 56689998764
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=4e-24 Score=244.13 Aligned_cols=334 Identities=12% Similarity=0.092 Sum_probs=199.5
Q ss_pred cceeeEEEEEeC--CeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCE
Q 001245 131 IGCFLRTIVCTE--EQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGV 205 (1115)
Q Consensus 131 ~~~~l~~l~~~~--~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~ 205 (1115)
+...+..++.+. +++++ +.|++|++||+.++.....+ ... ............| ..+|.+++|+| ++.+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-----TCK-AVCSIGRDHPDVH-RYSVETVQWYPHDTGM 114 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-----EEC-EEEEECTTCTTCC-SSCEEEEEECTTCTTC
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-----ecc-ccccccccccccC-CCcEEEEEEccCCCcE
Confidence 344556666653 44444 57999999999988765420 000 0000000000135 78999999999 7889
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC---c-EEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG---D-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG---~-L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
|+||+.||+|++||+.++ +....+ .|...+.++++++.+ . +++|+.|+.|++||+.+++...
T Consensus 115 l~s~~~d~~i~iwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~----- 180 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTL--------QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH----- 180 (408)
T ss_dssp EEEEETTSEEEEEETTTT--------EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-----
T ss_pred EEEEeCCCeEEEeeCCCC--------ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-----
Confidence 999999999999999873 223333 488899999999854 3 6899999999999998765431
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCcc-EEEEEecCCceeeEE
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRE-LLKVFNIDGQIENRV 358 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg~-ll~tl~~~~~~~~~v 358 (1115)
.+.+|. ..+.++++.+++. .+++++ +++|++||++++. ++..+..+....
T Consensus 181 --------------~~~~~~----------~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--- 233 (408)
T 4a11_B 181 --------------ILQGHR----------QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK--- 233 (408)
T ss_dssp --------------EECCCC----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS---
T ss_pred --------------eecCCC----------CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc---
Confidence 122343 5788899988877 466655 7899999999876 444443221110
Q ss_pred eccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecc-ccc----ccC-----CCc-eEEEE
Q 001245 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAK-GGF----GDD-----NRR-TEALT 426 (1115)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~-g~l----~~h-----~~~-V~aVa 426 (1115)
...... ...........+.|++++..+++++.+ .++.|+.. +.. ..+ ... ...+.
T Consensus 234 ------~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (408)
T 4a11_B 234 ------SQAVES-------ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS 300 (408)
T ss_dssp ------CCCTTT-------SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEEC
T ss_pred ------ceeecc-------ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEe
Confidence 000000 001112234567888888888887765 57777653 111 111 111 12223
Q ss_pred EcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEE
Q 001245 427 TSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI 502 (1115)
Q Consensus 427 ~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~ 502 (1115)
....+.+++++.|++|++||+ +++++.++.+|...|++++ ++|++|++|+.||+|++||++ ++.+.....+... .
T Consensus 301 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~ 379 (408)
T 4a11_B 301 CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-S 379 (408)
T ss_dssp CSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------
T ss_pred cCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-c
Confidence 344556888899999999999 8999999999999999998 689999999999999999987 6666555444332 2
Q ss_pred EEEe-cCCEEEeecCCCceEEeeec
Q 001245 503 KMAV-GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 503 sva~-dg~~laSgS~DgtIRlWdl~ 526 (1115)
.+.. ......+++.|+.|++|+..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 380 QLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------------
T ss_pred ccccccceeecccCccCceeecCCc
Confidence 2222 33445577889999999853
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=3.1e-24 Score=237.72 Aligned_cols=304 Identities=11% Similarity=0.049 Sum_probs=185.4
Q ss_pred cceeeEEEEEe-CCe-EEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC--CCCE
Q 001245 131 IGCFLRTIVCT-EEQ-LWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGV 205 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~-l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~--dg~~ 205 (1115)
+...+..++.+ ++. |++ +.|++|++||+.++..... .......| ..+|.|++|+| ++.+
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~-~~~v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAH-DSSIVAIDWASPEYGRI 73 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECC-SSCEEEEEECCGGGCSE
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce---------------ecceeccC-CCcEEEEEEcCCCCCCE
Confidence 44566677776 344 444 5799999999987643211 00011235 78999999999 6999
Q ss_pred EEEEeCCCeEEEEECCCCCCC-CCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 206 VWSGHRDGRIMCWKMNARLLD-SDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~-~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
|++|+.||+|++||+.++... .....+....+.+|.++|++++|+|+ +. |++|+.||+|++||+.+++....+...
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 999999999999999864310 01111346678899999999999999 87 789999999999999886544222100
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC---CCEEEeec-CCeEEEEEcCCccE--EEEEecCCcee
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS---RAKVWSAG-FLSFALWDARTREL--LKVFNIDGQIE 355 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~---~~~v~S~s-d~tI~lWD~~tg~l--l~tl~~~~~~~ 355 (1115)
.. .....+. .......+.++++.++ +..+++++ ++.+.+|+..+++. +..+.+|...+
T Consensus 154 ~~--------~~~~~~~--------~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 154 SE--------MKVLSIP--------PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217 (351)
T ss_dssp EE--------EESCSCC--------CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCE
T ss_pred cc--------ccccccc--------cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcce
Confidence 00 0000000 0012256778888875 66777665 56788888777765 44444444443
Q ss_pred eEEeccCCCCccccccceEEEEecCCCCccceeeeeeccc----cceEEeccCc-EEEEeccccc-----ccCCCceEEE
Q 001245 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS----RNAIMGAADA-VRRVAAKGGF-----GDDNRRTEAL 425 (1115)
Q Consensus 356 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~----~~~~~Gs~d~-v~~~~~~g~l-----~~h~~~V~aV 425 (1115)
+.+ .|.+++ ..+++|+.|+ ++.|+..... ..+...+...
T Consensus 218 ~~~-------------------------------~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 266 (351)
T 3f3f_A 218 RSI-------------------------------SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF 266 (351)
T ss_dssp EEE-------------------------------EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------
T ss_pred eEE-------------------------------EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc
Confidence 333 444444 4566776654 7777653211 1111122222
Q ss_pred EEcCCCc-E----EEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cc---cccc
Q 001245 426 TTSIDGM-I----WTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GN---LLGG 493 (1115)
Q Consensus 426 a~S~Dg~-l----aSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~---ll~~ 493 (1115)
..+++.. + ..+..+..+++|+. +++++.++.+|...|++++ ++|++|++|+.||+|++||++ ++ ++..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSV 346 (351)
T ss_dssp ------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred CCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheee
Confidence 2333322 1 23344567788887 7889999999999999999 689999999999999999986 43 3444
Q ss_pred cccc
Q 001245 494 WVAH 497 (1115)
Q Consensus 494 l~gH 497 (1115)
+..|
T Consensus 347 ~~~~ 350 (351)
T 3f3f_A 347 ITAQ 350 (351)
T ss_dssp EC--
T ss_pred hccc
Confidence 4443
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.93 E-value=1.3e-25 Score=263.84 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=183.8
Q ss_pred cceeeEEEEEe--CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCE
Q 001245 131 IGCFLRTIVCT--EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGV 205 (1115)
Q Consensus 131 ~~~~l~~l~~~--~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~ 205 (1115)
....+..|+.+ +..++| +.|++|+|||+.++..... +...+| .++|.||+|+| ++.+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH-~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGA-GGSITGLKFNPLNTNQ 179 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSS-SCCCCEEEECSSCTTE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCC-CCCEEEEEEeCCCCCE
Confidence 34457788887 344554 5799999999987754331 112246 78999999998 6899
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEee---cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ---AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~---GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
|+|||.||+||+||+.++ ....+. .|...|.+++|+|+|. |++|+.||+|++||+++.. .
T Consensus 180 l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~------ 243 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-L------ 243 (435)
T ss_dssp EEEECSSSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-C------
T ss_pred EEEEeCCCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-e------
Confidence 999999999999999862 233333 3355789999999998 7899999999999986532 1
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCccEEEEE---ecCCceee
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTRELLKVF---NIDGQIEN 356 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg~ll~tl---~~~~~~~~ 356 (1115)
..+.+|. ..|.++++++.+. .+++++ |++|+|||+++++....+ .+|...
T Consensus 244 -------------~~~~~h~----------~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~-- 298 (435)
T 4e54_B 244 -------------WNLRMHK----------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP-- 298 (435)
T ss_dssp -------------CCSBCCS----------SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSC--
T ss_pred -------------EEEeccc----------ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccc--
Confidence 1123454 6788889887765 566665 789999999886643322 122222
Q ss_pred EEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc-c----ccccCC-----------
Q 001245 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK-G----GFGDDN----------- 419 (1115)
Q Consensus 357 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~-g----~l~~h~----------- 419 (1115)
+..+.|++++..+++|+.|+ ++.|+.. + .+..|.
T Consensus 299 -----------------------------v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (435)
T 4e54_B 299 -----------------------------VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK 349 (435)
T ss_dssp -----------------------------EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred -----------------------------ccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence 23445666666666666553 5555442 1 111111
Q ss_pred ------CceEEEEEcCCCc--EEEEeCCCeEEEEcC-CCCeeEEee-cCCCcEEEEE---ecCCEEEeeecccEEEEEeC
Q 001245 420 ------RRTEALTTSIDGM--IWTGGANGLLLQWDP-NGNRLQDFQ-YLPFAVQCLC---TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 420 ------~~V~aVa~S~Dg~--laSGS~DgtIklWD~-tG~~l~tl~-gH~~~V~sla---~dG~~LaSGs~DGtIrlWD~ 486 (1115)
..+.++++++|+. ++++..+++|++||. +|+++.++. +|...|.++. |+|++||+|+ |++|+|||+
T Consensus 350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 1223344455554 234445678999999 899988865 6888888874 6899999987 789999998
Q ss_pred C-Ccc
Q 001245 487 E-GNL 490 (1115)
Q Consensus 487 ~-G~l 490 (1115)
+ |+.
T Consensus 429 ~~gk~ 433 (435)
T 4e54_B 429 QEART 433 (435)
T ss_dssp C----
T ss_pred CcCee
Confidence 7 654
No 109
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=6.2e-25 Score=250.41 Aligned_cols=282 Identities=12% Similarity=0.025 Sum_probs=182.1
Q ss_pred EEEe-CCeEEE--eCCCCEEEEeCCCC--cccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC
Q 001245 138 IVCT-EEQLWA--GGENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1115)
Q Consensus 138 l~~~-~~~l~a--g~D~tvrvWdl~tg--~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D 212 (1115)
++.+ ++.+++ +.|++|++||+.++ ..... + ..| ..+|.+++|+|++++|+||+.|
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~-----------------~--~~h-~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHART-----------------F--SDH-DKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTEEEECCC-----------------B--CCC-SSCEEEEEECTTTCCEEEEETT
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCceEEEEE-----------------E--ecC-CceEEEEEEeCCCCEEEEEeCC
Confidence 3443 344444 47999999999877 44332 1 245 7899999999999999999999
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEee
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~ 291 (1115)
|+|++||+.++. .......+.+|.+.|++++|+|+|+ |++|+.|++|++||++++.....
T Consensus 77 ~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------- 137 (377)
T 3dwl_C 77 RNAYVYEKRPDG-----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV-------------- 137 (377)
T ss_dssp SSEEEC-----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC--------------
T ss_pred CeEEEEEcCCCC-----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee--------------
Confidence 999999998632 1234667889999999999999997 89999999999999987542100
Q ss_pred eeeeeecc-cceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCcccc
Q 001245 292 RSYIDLRS-HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAME 369 (1115)
Q Consensus 292 ~~~~~l~~-h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~ 369 (1115)
...+.+ |. ..+.++++++++..+++++ |++|++||+.+++........ + ..
T Consensus 138 --~~~~~~~h~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----------~-----~~ 190 (377)
T 3dwl_C 138 --SKHLKRPLR----------STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS----------V-----WG 190 (377)
T ss_dssp --CEEECSSCC----------SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC----------S-----SC
T ss_pred --eeEeecccC----------CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc----------c-----cc
Confidence 011222 33 6788999999998888876 689999999754421110000 0 00
Q ss_pred cc-ceEEEEecCCCCccceeeeeeccccceEEeccCc-EEEEecc---------cccccCCCceEEEEEcCCCc-EEEEe
Q 001245 370 DE-FKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADA-VRRVAAK---------GGFGDDNRRTEALTTSIDGM-IWTGG 437 (1115)
Q Consensus 370 ~~-~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~-v~~~~~~---------g~l~~h~~~V~aVa~S~Dg~-laSGS 437 (1115)
.. ..-..............+.|++++..+++|+.|+ ++.|+.. ..+.+|...|.+++++|||. |++|+
T Consensus 191 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 191 SRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp SCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred cccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 00 0000011112222345667777877788877764 5566542 23456888999999999998 56776
Q ss_pred CCCeEEEEcCC--C-Cee----------------------------------EEe----------------ecCCCcEEE
Q 001245 438 ANGLLLQWDPN--G-NRL----------------------------------QDF----------------QYLPFAVQC 464 (1115)
Q Consensus 438 ~DgtIklWD~t--G-~~l----------------------------------~tl----------------~gH~~~V~s 464 (1115)
.|+.+ +|+.. | ++. ..+ ..|.+.|++
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~ 349 (377)
T 3dwl_C 271 NYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIAT 349 (377)
T ss_dssp SSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEE
T ss_pred CCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEE
Confidence 66555 77652 2 011 111 129999999
Q ss_pred EEe---cCC---EEEeeecccEEEEEeC
Q 001245 465 LCT---FGS---QIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 465 la~---dG~---~LaSGs~DGtIrlWD~ 486 (1115)
|++ ++. +|+||+.||+|+|||+
T Consensus 350 ~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 350 LRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred EeccCCCCCceEEEEeecCCCcEEEecC
Confidence 982 233 7999999999999985
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=1.3e-24 Score=248.95 Aligned_cols=264 Identities=8% Similarity=-0.003 Sum_probs=185.6
Q ss_pred eccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEE
Q 001245 188 VKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIK 265 (1115)
Q Consensus 188 ~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIr 265 (1115)
.| ..+|+|++|+|||++||+|+.|| +++|+++++ +. .+..+...+..+++.+++. + ++|+.|++|+
T Consensus 17 ~h-~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 17 HV-SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AH--IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EE--EEEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred cC-CCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ce--eeeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 35 78999999999999999999886 789998862 22 2233334588889988876 4 5788899999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCc-cE
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR-EL 344 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg-~l 344 (1115)
+||+.++++...+ . + ...+.+++++++ .++.+.+++|+|||+.++ ++
T Consensus 85 iWd~~~~~~~~~~-------------------~-~----------~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 85 IWDDVKKQDVSRI-------------------K-V----------DAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKR 132 (355)
T ss_dssp EEETTTTEEEEEE-------------------E-C----------SSCEEEEEECSS--EEEEEETTEEEEEESSTTCCB
T ss_pred EEECCCCcEEEEE-------------------E-C----------CCceEEEEEcCC--EEEEEEcCEEEEEECCCCcee
Confidence 9999887654211 0 1 145666766643 455566889999999988 66
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEE-eccC-cEEEEecc----------
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GAAD-AVRRVAAK---------- 412 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-Gs~d-~v~~~~~~---------- 412 (1115)
++++.. ......+++ ...++. |..+ .++.|+..
T Consensus 133 ~~~~~~---~~~~~~~s~--------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~ 177 (355)
T 3vu4_A 133 ITDDIR---FGGVCEFSN--------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQ 177 (355)
T ss_dssp SSCCEE---EEEEEEEET--------------------------------TEEEEEESSCTTCEEEEECCC---------
T ss_pred eEEecc---CCceEEEEc--------------------------------cEEEEeCCCcCcEEEEEECCCCCccccccc
Confidence 555433 111112221 011111 2222 34444332
Q ss_pred -----------cccccCCCceEEEEEcCCCc-EEEEeCCCe-EEEEcC-CCCeeEEee-c-CCCcEEEEE--ecCCEEEe
Q 001245 413 -----------GGFGDDNRRTEALTTSIDGM-IWTGGANGL-LLQWDP-NGNRLQDFQ-Y-LPFAVQCLC--TFGSQIWV 474 (1115)
Q Consensus 413 -----------g~l~~h~~~V~aVa~S~Dg~-laSGS~Dgt-IklWD~-tG~~l~tl~-g-H~~~V~sla--~dG~~LaS 474 (1115)
..+.+|...|.+++++|||. |+||+.|++ |++||+ +|+++.++. + |...|++++ |+|++|++
T Consensus 178 ~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s 257 (355)
T 3vu4_A 178 GVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAV 257 (355)
T ss_dssp ---------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEE
T ss_pred cccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEE
Confidence 23568999999999999998 799999999 999999 899999998 6 999999999 78999999
Q ss_pred eecccEEEEEeCC-Cc--ccccccc---------------------ccCCEEEEE--ecCCEEEeecCCCceEEeeecCC
Q 001245 475 GYMNGIVQVLDLE-GN--LLGGWVA---------------------HSSPVIKMA--VGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 475 Gs~DGtIrlWD~~-G~--ll~~l~g---------------------H~~~V~sva--~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
|+.|++|+|||++ +. ....+.+ +......++ .||++|++++.||++++|++...
T Consensus 258 ~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 258 VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred EECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 9999999999985 22 1111111 111123344 48889999999999999998764
Q ss_pred CC
Q 001245 529 GP 530 (1115)
Q Consensus 529 ~p 530 (1115)
+.
T Consensus 338 ~~ 339 (355)
T 3vu4_A 338 DE 339 (355)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.7e-24 Score=254.08 Aligned_cols=249 Identities=14% Similarity=0.141 Sum_probs=193.2
Q ss_pred eccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCC--CCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCC
Q 001245 188 VKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDS--DDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGG 262 (1115)
Q Consensus 188 ~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~--~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~Dg 262 (1115)
.| .+.|++++|+|+ +.+||+|+.||+|++||+....... ........++.+|.+.|++|+|+|++. |++|+.||
T Consensus 126 ~h-~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 126 NH-EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EE-SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred cC-CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 45 789999999997 7899999999999999997411000 001245678899999999999999986 78999999
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-CCCEEEeec-CCeEEEEEcC
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-SRAKVWSAG-FLSFALWDAR 340 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~~~~v~S~s-d~tI~lWD~~ 340 (1115)
+|++|++.++..... .+ .....+.+|. ..+.++++++ ++..+++++ ++.|++||++
T Consensus 205 ~i~vwd~~~~~~~~~------~~------~~~~~~~~h~----------~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 205 TICLWDINATPKEHR------VI------DAKNIFTGHT----------AVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CEEEEETTSCCBGGG------EE------ECSEEECCCS----------SCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred eEEEEeCCCCCCCCc------ee------ccceeecCCC----------CCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 999999987322100 00 0001122343 5688899888 566777765 7899999998
Q ss_pred Ccc---EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccccccc
Q 001245 341 TRE---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD 417 (1115)
Q Consensus 341 tg~---ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~ 417 (1115)
++. .+.. +..
T Consensus 263 ~~~~~~~~~~-------------------------------------------------------------------~~~ 275 (430)
T 2xyi_A 263 NNNTSKPSHT-------------------------------------------------------------------VDA 275 (430)
T ss_dssp CSCSSSCSEE-------------------------------------------------------------------EEC
T ss_pred CCCCCcceeE-------------------------------------------------------------------eec
Confidence 652 1111 123
Q ss_pred CCCceEEEEEcCCCc--EEEEeCCCeEEEEcC-C-CCeeEEeecCCCcEEEEE--ecC-CEEEeeecccEEEEEeCCC--
Q 001245 418 DNRRTEALTTSIDGM--IWTGGANGLLLQWDP-N-GNRLQDFQYLPFAVQCLC--TFG-SQIWVGYMNGIVQVLDLEG-- 488 (1115)
Q Consensus 418 h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~-t-G~~l~tl~gH~~~V~sla--~dG-~~LaSGs~DGtIrlWD~~G-- 488 (1115)
|...|.+++++|++. +++|+.||+|++||+ + +.++.++.+|...|++|+ ++| .+|++|+.||+|+|||+..
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 456788999999885 789999999999999 4 678999999999999999 677 4799999999999999863
Q ss_pred -------------ccccccccccCCEEEEEe--cCC-EEEeecCCCceEEeeec
Q 001245 489 -------------NLLGGWVAHSSPVIKMAV--GAG-YIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 489 -------------~ll~~l~gH~~~V~sva~--dg~-~laSgS~DgtIRlWdl~ 526 (1115)
+++..+.+|.+.|.++++ ++. +++|++.|++|++|++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 567788899999999996 566 89999999999999985
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=6.3e-25 Score=255.06 Aligned_cols=261 Identities=15% Similarity=0.094 Sum_probs=159.4
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCc-eeeeccCCceEEEEEcC--------CCCEEEEEeCCCeEEEE
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPF-KESVKGVSSVMCMVGDE--------ASGVVWSGHRDGRIMCW 218 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~-~~s~~G~~~V~~la~s~--------dg~~LaSGS~DgtIrlW 218 (1115)
+.|++||+||+.++..... .++ ...+| .++|++|+|+| |+++|||||.|++||+|
T Consensus 108 ~~d~~v~lw~~~~~~~~~~---------------~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQ---------------HVLGGKSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp ETTSCEEEEEEETTEEEEE---------------EEECTTTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred eCCCcEEEEECCCCcccee---------------eeecccCCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 6899999999988764321 000 11256 88999999997 89999999999999999
Q ss_pred ECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcc--eeEEEEeeeee
Q 001245 219 KMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEER--HTAALIVERSY 294 (1115)
Q Consensus 219 dl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~--~~~a~~~~~~~ 294 (1115)
|+.++ .++..+.+|.++|.+|+|+|++. |++|+.|++||+||+.+++.......... ....+.....
T Consensus 172 d~~~~--------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~- 242 (393)
T 4gq1_A 172 RLTDE--------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL- 242 (393)
T ss_dssp EEETT--------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG-
T ss_pred ECCCC--------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc-
Confidence 99752 34667889999999999999874 78999999999999988655432211110 0000000000
Q ss_pred eeecccceecceeeeecCCeEEEEEe-CCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccc
Q 001245 295 IDLRSHLSVNGFSSILTSDIKNLLSD-HSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1115)
Q Consensus 295 ~~l~~h~~~~~~~~~~s~~v~~las~-~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~ 372 (1115)
.. . ...........+.++.+. +++..+++++ |+++++||+.++.....+..+...+..+.+.+.
T Consensus 243 -~~---~-~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~--------- 308 (393)
T 4gq1_A 243 -PL---V-NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN--------- 308 (393)
T ss_dssp -GG---C-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS---------
T ss_pred -cc---e-eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc---------
Confidence 00 0 000001122445566654 6778888876 689999999998877666443322211111111
Q ss_pred eEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc-CCCc-EEEEeCCCeEEEEcC-CC
Q 001245 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGM-IWTGGANGLLLQWDP-NG 449 (1115)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S-~Dg~-laSGS~DgtIklWD~-tG 449 (1115)
.+. ...+...+.++.++ .++. +++|+.||+|+|||+ +|
T Consensus 309 ----------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 309 ----------------------VQG-----------------ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp ----------------------EEE-----------------ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred ----------------------ccc-----------------ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence 000 00001111222222 3444 578899999999999 89
Q ss_pred CeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 450 NRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 450 ~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+++..+.+|..+|++|+ |||++||+|+.+| |.+|.+.
T Consensus 350 ~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 350 DSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred cEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999999999999 7999999999887 5666654
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.93 E-value=3.9e-24 Score=247.48 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=185.5
Q ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC-CCc-EEEEeCCCcEEEEeCCC
Q 001245 195 MCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 195 ~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp-dG~-L~SgS~DgtIrvWdl~t 271 (1115)
.+++++|+.. ++++|+.||+|++|++... .........+.+|.++|++|+|+| ++. |++|+.||+|+|||+.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~----~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKT----GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCC----EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccC----CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 3577788754 4557899999999999641 111123456789999999999999 776 78999999999999987
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
+....... .....+.+|. ..+.++++.+++ ..+++++ |++|+|||+.+++++.++.
T Consensus 114 ~~~~~~~~------------~~~~~~~~h~----------~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 114 GGLVLPLR------------EPVITLEGHT----------KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp TCCSSCBC------------SCSEEEECCS----------SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCccccC------------CceEEecCCC----------CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 63221000 0011233454 678899999887 5777765 7899999999888765541
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
..+|...|.+++++|
T Consensus 172 -----------------------------------------------------------------~~~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 172 -----------------------------------------------------------------PDVHPDTIYSVDWSR 186 (402)
T ss_dssp -----------------------------------------------------------------TTTCCSCEEEEEECT
T ss_pred -----------------------------------------------------------------cCCCCCceEEEEECC
Confidence 012445677889999
Q ss_pred CCc-EEEEeCCCeEEEEcC-CCCeeEEe-ecCCCc-EEEEE--ecCCEEEee---ecccEEEEEeCC-Ccc-ccccc-cc
Q 001245 430 DGM-IWTGGANGLLLQWDP-NGNRLQDF-QYLPFA-VQCLC--TFGSQIWVG---YMNGIVQVLDLE-GNL-LGGWV-AH 497 (1115)
Q Consensus 430 Dg~-laSGS~DgtIklWD~-tG~~l~tl-~gH~~~-V~sla--~dG~~LaSG---s~DGtIrlWD~~-G~l-l~~l~-gH 497 (1115)
++. |++|+.|++|++||+ +++++.++ .+|.+. +.+++ ++|++|++| +.|++|++||+. ++. +.... .|
T Consensus 187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 986 899999999999999 89999998 788876 77777 789999999 799999999987 433 33333 67
Q ss_pred cCCEEEEEe--cCCEEE-eecCCCceEEeeecCCCC
Q 001245 498 SSPVIKMAV--GAGYIF-TLANHGGIRGWNVTSPGP 530 (1115)
Q Consensus 498 ~~~V~sva~--dg~~la-SgS~DgtIRlWdl~~p~p 530 (1115)
...|.++++ ++++++ +++.|++|++||+.+..+
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 788998875 678886 667899999999987554
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=3.2e-23 Score=242.03 Aligned_cols=247 Identities=14% Similarity=0.161 Sum_probs=178.3
Q ss_pred eeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 133 CFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 133 ~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
..+..|+.+ ++.+++ +.|++|+|||++++..... ...| ...|.|++++ +.+|+||
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~-------------------~~~h-~~~v~~~s~~--~~~l~sg 205 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLSWN--SYILSSG 205 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-------------------ECCC-SSCEEEEEEE--TTEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-------------------EeCC-CCceEEEeeC--CCEEEEE
Confidence 345556665 444444 5899999999999877653 2245 7788888774 6899999
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
+.|+++++||..... ..+.++.+|...|..+.++|+|. |++++.|++|++|+..+++.....
T Consensus 206 s~d~~i~~~d~~~~~-------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~---------- 268 (420)
T 4gga_A 206 SRSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP---------- 268 (420)
T ss_dssp ETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----------
T ss_pred eCCCceeEeeecccc-------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----------
Confidence 999999999987532 34667899999999999999998 789999999999999875432100
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCCC-EEEee---cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA-KVWSA---GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~---sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
......|. ..|.++++.+.+. .++++ .|++|++||+.+|+++..+..+.+
T Consensus 269 -----~~~~~~~~----------~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~----------- 322 (420)
T 4gga_A 269 -----LQTFTQHQ----------GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----------- 322 (420)
T ss_dssp -----SEEECCCS----------SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-----------
T ss_pred -----eeeecccC----------CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-----------
Confidence 00112222 5677888877544 44443 268999999999998877643322
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEE--EeCCCe
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANGL 441 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laS--GS~Dgt 441 (1115)
+.++++++++. +++ |+.|++
T Consensus 323 ---------------------------------------------------------v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 323 ---------------------------------------------------------VCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp ---------------------------------------------------------EEEEEEETTTTEEEEEECTTTCC
T ss_pred ---------------------------------------------------------eeeeeecCCCCeEEEEEecCCCE
Confidence 23344555554 554 447999
Q ss_pred EEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCE
Q 001245 442 LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV 501 (1115)
Q Consensus 442 IklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V 501 (1115)
|+|||+ +++++.++.+|.+.|++|+ |||++||||+.||+|+|||+. ....+....|...+
T Consensus 346 I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 346 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASA 409 (420)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence 999999 8999999999999999999 799999999999999999985 45555555555443
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=2.3e-23 Score=234.03 Aligned_cols=266 Identities=11% Similarity=0.129 Sum_probs=186.6
Q ss_pred ccceeeEEEEEeCC----eEEE--eCCCCEEEEeCCC-CcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC
Q 001245 130 QIGCFLRTIVCTEE----QLWA--GGENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA 202 (1115)
Q Consensus 130 ~~~~~l~~l~~~~~----~l~a--g~D~tvrvWdl~t-g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d 202 (1115)
.+...+..++.+.. .+++ +.|++|++||+.+ +..... ....| ..+|.+++|+|+
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h-~~~v~~~~~~~~ 97 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH-TGPVLDVCWSDD 97 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC-SSCEEEEEECTT
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc-cCCEEEEEECcC
Confidence 34567778888743 5555 5799999999987 433211 22346 789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEE--eCCCc-EEEEeCCCcEEEEeCCCcceeeccC
Q 001245 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCI--SSYGD-LWSGSEGGGIKIWPWEAIEKALSLK 279 (1115)
Q Consensus 203 g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVaf--SpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~ 279 (1115)
+++|++|+.||+|++||+.++ ....+.+|.++|++++| +|++. |++|+.||+|++||+.+++....+.
T Consensus 98 ~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 168 (368)
T 3mmy_A 98 GSKVFTASCDKTAKMWDLSSN---------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ 168 (368)
T ss_dssp SSEEEEEETTSEEEEEETTTT---------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE
T ss_pred CCEEEEEcCCCcEEEEEcCCC---------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe
Confidence 999999999999999999873 34557889999999999 88887 7899999999999998865432211
Q ss_pred CCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEec--CCceeeE
Q 001245 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNI--DGQIENR 357 (1115)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~--~~~~~~~ 357 (1115)
.+ ..+.++.... ...++...++.+++||+.+......... .....
T Consensus 169 -------------------~~-----------~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-- 215 (368)
T 3mmy_A 169 -------------------LP-----------ERCYCADVIY-PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQH-- 215 (368)
T ss_dssp -------------------CS-----------SCEEEEEEET-TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCE--
T ss_pred -------------------cC-----------CCceEEEecC-CeeEEEeCCCcEEEEEeccccchhhhccccccCCC--
Confidence 11 1223333332 2334445578999999987654322110 00110
Q ss_pred EeccCCCCccccccceEEEEecCCCCccceeeeeecccc----ceEEeccCc-EEEEeccc--------ccccCCC----
Q 001245 358 VDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR----NAIMGAADA-VRRVAAKG--------GFGDDNR---- 420 (1115)
Q Consensus 358 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~----~~~~Gs~d~-v~~~~~~g--------~l~~h~~---- 420 (1115)
..+.+..... .+++|+.++ ++.|+... .+..|..
T Consensus 216 -----------------------------~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 216 -----------------------------RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp -----------------------------EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred -----------------------------ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 0111111111 145555554 55554421 2334443
Q ss_pred --------ceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEe
Q 001245 421 --------RTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 421 --------~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD 485 (1115)
.|.+++++|++. |++|+.||+|++||+ ++++++++.+|...|++++ ++|++|++|+.|+..+.|+
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 699999999986 899999999999999 7999999999999999999 7899999999998655554
No 116
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=2e-23 Score=233.65 Aligned_cols=264 Identities=10% Similarity=0.103 Sum_probs=190.2
Q ss_pred eeeEEEEEe--CCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCC-EEEE
Q 001245 133 CFLRTIVCT--EEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWS 208 (1115)
Q Consensus 133 ~~l~~l~~~--~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~-~LaS 208 (1115)
..+..++.+ ...|++ +.|++|++||+.++..... ......| ..+|.|++|+|+++ +|++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~-~~~v~~~~~~~~~~~~l~~ 74 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRY-KHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------------EEEEEEC-SSCEEEEEEEESSSEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeec-CCceEEEEECCCCCcEEEE
Confidence 345566665 334544 5899999999987652110 0111245 78999999999999 9999
Q ss_pred EeCCCeEEEEEC-CCCCCCCCCCCcceEEeec--CCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC---------ccee
Q 001245 209 GHRDGRIMCWKM-NARLLDSDDGFGEVLSWQA--HRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA---------IEKA 275 (1115)
Q Consensus 209 GS~DgtIrlWdl-~~~~~~~~~~~~~~~~l~G--H~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t---------~~~~ 275 (1115)
|+.||+|++||+ .++ ....+.+ |.+.|++|+|+| +. |++|+.|++|++||+.+ +++.
T Consensus 75 ~~~dg~i~~wd~~~~~---------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSP---------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EETTSCEEEECSSSSS---------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EcCCCeEEEEEeccCC---------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999 762 3567889 999999999999 66 79999999999999876 3222
Q ss_pred eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCC-ccEE--EEEecCC
Q 001245 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDART-RELL--KVFNIDG 352 (1115)
Q Consensus 276 l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~t-g~ll--~tl~~~~ 352 (1115)
.. +. | ...+.++++++++ .+..+.+++|++||+++ +... .....+.
T Consensus 145 ~~-------------------~~-~----------~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 193 (342)
T 1yfq_A 145 NN-------------------TK-V----------KNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193 (342)
T ss_dssp SS-------------------SS-S----------CCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCS
T ss_pred eE-------------------Ee-e----------CCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCC
Confidence 11 00 1 2567788887765 44444578999999988 5531 1222222
Q ss_pred ceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeec-cccceEEeccCc-EEEEeccc-----------ccccC-
Q 001245 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQ-RSRNAIMGAADA-VRRVAAKG-----------GFGDD- 418 (1115)
Q Consensus 353 ~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~-~~~~~~~Gs~d~-v~~~~~~g-----------~l~~h- 418 (1115)
..+ ..+.|.+ ++..+++|+.++ ++.|.... .+..|
T Consensus 194 ~~i-------------------------------~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 194 YQI-------------------------------RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp SCE-------------------------------EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred Cce-------------------------------eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 222 2345555 555566665554 44443321 12334
Q ss_pred --------CCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeecC-CCcEEEEEecCCEEEeeecccE-EEEEe
Q 001245 419 --------NRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLCTFGSQIWVGYMNGI-VQVLD 485 (1115)
Q Consensus 419 --------~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH-~~~V~sla~dG~~LaSGs~DGt-IrlWD 485 (1115)
...|.+++++|++. |++|+.||+|++||+ +++++.++.+| ..+|++++++|++|++|+.||+ .+.|.
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCccccccc
Confidence 34899999999987 899999999999999 79999999998 9999999999999999999998 55544
No 117
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-23 Score=237.99 Aligned_cols=241 Identities=11% Similarity=0.114 Sum_probs=178.3
Q ss_pred cceeeEEEEEe-CCe-EEE-eCCCCEEEEeCCCC--cccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC--C
Q 001245 131 IGCFLRTIVCT-EEQ-LWA-GGENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--S 203 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~-l~a-g~D~tvrvWdl~tg--~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d--g 203 (1115)
+...+..++.+ +++ |.+ +.|++|+|||+.++ .... ....| ..+|.|++|+++ +
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h-~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID-------------------TLTGH-EGPVWRVDWAHPKFG 69 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE-------------------EECCC-SSCEEEEEECCGGGC
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeee-------------------EecCC-CCcEEEEEeCCCCCC
Confidence 44556677766 344 444 47999999999733 2222 11245 789999999977 9
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
.+|+||+.||+|++||+.++.. .....+.+|..+|++++|+|+ +. |++|+.|++|++||+.+......
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--- 140 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRW------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--- 140 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE---
T ss_pred CEEEEeccCCEEEEEEcCCCce------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee---
Confidence 9999999999999999986321 246678899999999999999 76 78999999999999987532210
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-------------CCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-------------~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
..+.+|. ..+.++++.+ ++..+++++ +++|++||++++....
T Consensus 141 --------------~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 196 (379)
T 3jrp_A 141 --------------IIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 196 (379)
T ss_dssp --------------EEEECCT----------TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE
T ss_pred --------------EEecCCC----------CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce
Confidence 1122233 5677777777 577777765 7899999987654221
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
.+ ...+.+|...|.+++
T Consensus 197 ~~---------------------------------------------------------------~~~~~~h~~~v~~~~ 213 (379)
T 3jrp_A 197 VL---------------------------------------------------------------ESTLEGHSDWVRDVA 213 (379)
T ss_dssp EE---------------------------------------------------------------EEEECCCSSCEEEEE
T ss_pred ee---------------------------------------------------------------EEEEecccCcEeEEE
Confidence 11 001345667788999
Q ss_pred EcCC---Cc-EEEEeCCCeEEEEcC-CCC---eeEE--eecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 427 TSID---GM-IWTGGANGLLLQWDP-NGN---RLQD--FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 427 ~S~D---g~-laSGS~DgtIklWD~-tG~---~l~t--l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
++|+ +. +++|+.||+|++||+ ++. .... ...|...|++++ ++|++|++|+.||+|++||++
T Consensus 214 ~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9999 66 799999999999999 543 2223 334888999998 789999999999999999986
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=2e-22 Score=230.78 Aligned_cols=288 Identities=8% Similarity=0.060 Sum_probs=204.6
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L-aSGS~DgtIrlWdl~~~~~~ 226 (1115)
+.|++|++||+.++..... .. . ...+.+++|+|+|+.| ++++.|++|++||+.++
T Consensus 9 ~~d~~v~v~d~~~~~~~~~------------------~~-~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--- 64 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTAT------------------IP-V--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--- 64 (391)
T ss_dssp TTTTEEEEEETTTTEEEEE------------------EE-C--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---
T ss_pred CCCCEEEEEECCCCeEEEE------------------ee-c--CCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---
Confidence 4789999999998876542 11 2 3468999999999976 78889999999999863
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceec
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVN 304 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~ 304 (1115)
+....+..|. .|.+++|+|+|+ | ++++.|++|++||+.+++.... +..+
T Consensus 65 -----~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-------------------~~~~---- 115 (391)
T 1l0q_A 65 -----NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-------------------VKTG---- 115 (391)
T ss_dssp -----EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS----
T ss_pred -----eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE-------------------EeCC----
Confidence 3345555555 999999999998 6 4677889999999988654311 1111
Q ss_pred ceeeeecCCeEEEEEeCCCCEE-Eeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCC
Q 001245 305 GFSSILTSDIKNLLSDHSRAKV-WSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKK 382 (1115)
Q Consensus 305 ~~~~~~s~~v~~las~~~~~~v-~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~ 382 (1115)
..+..+++++++..+ ++++ ++.|++||+.+++++..+..+..+ ..+
T Consensus 116 -------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~------------------------ 163 (391)
T 1l0q_A 116 -------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-KGI------------------------ 163 (391)
T ss_dssp -------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE-EEE------------------------
T ss_pred -------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc-ceE------------------------
Confidence 345678888888877 4555 689999999999998887654433 233
Q ss_pred Cccceeeeeeccccce-EEeccC-cEEEEecc-cc---cccCCCceEEEEEcCCCc-EEEEe---CCCeEEEEcC-CCCe
Q 001245 383 DKAQSSFGFFQRSRNA-IMGAAD-AVRRVAAK-GG---FGDDNRRTEALTTSIDGM-IWTGG---ANGLLLQWDP-NGNR 451 (1115)
Q Consensus 383 ~~~~~~v~f~~~~~~~-~~Gs~d-~v~~~~~~-g~---l~~h~~~V~aVa~S~Dg~-laSGS---~DgtIklWD~-tG~~ 451 (1115)
.|.+++..+ +++..+ .+..|+.. +. ...+...+.+++++++|. +++++ .|+.|++||+ ++++
T Consensus 164 -------~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 164 -------AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp -------EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred -------EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 333444333 333333 45555542 11 123445788899999997 67766 6899999999 7889
Q ss_pred eEEeecCCCcEEEEE--ecCCEE-EeeecccEEEEEeCC-CccccccccccCCEE------E-----------EEecC--
Q 001245 452 LQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVI------K-----------MAVGA-- 508 (1115)
Q Consensus 452 l~tl~gH~~~V~sla--~dG~~L-aSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~------s-----------va~dg-- 508 (1115)
+..+..|.. +.+++ ++|++| ++++.|++|++||+. ++++..+..|..+.. . ...+.
T Consensus 237 ~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~ 315 (391)
T 1l0q_A 237 TARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITS 315 (391)
T ss_dssp EEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCS
T ss_pred EEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccc
Confidence 999988754 67776 789888 566889999999987 888888877765431 1 11111
Q ss_pred --------CEEEeecCCCceEEeeecCC
Q 001245 509 --------GYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 509 --------~~laSgS~DgtIRlWdl~~p 528 (1115)
-.+.+.+.|.++++|++..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 316 GYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp SEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred ccccccceEEEEeCCCCceEEEEECCCC
Confidence 23556778889999998653
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.8e-25 Score=263.59 Aligned_cols=245 Identities=7% Similarity=0.001 Sum_probs=180.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCC-----CEEEEEEeCCCc-EEEEeCCCcE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG-----PVLSLCISSYGD-LWSGSEGGGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~-----~V~sVafSpdG~-L~SgS~DgtI 264 (1115)
...|.+++|||+|++||+++.||+|++||.++ ....+. |.. .|.+|+|||||+ |++|+.||+|
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 56899999999999999999999999999653 344556 766 499999999998 8999999999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccE
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTREL 344 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~l 344 (1115)
+|||+.++... .+.-..+..+ .....+|. +.|.++++++++ .++++.|++|++||+.++++
T Consensus 154 kIWd~~~~~l~---~~~~i~l~ti-----~~~~~gh~----------~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 154 QFFSIRKNSEN---TPEFYFESSI-----RLSDAGSK----------DWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EEEECCCCTTT---CCCCEEEEEE-----ECSCTTCC----------CCEEEEEEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred EEEECCCCccc---cccceeeeee-----eccccccc----------ccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence 99999875320 0000000000 00012333 678999999998 66677799999999988773
Q ss_pred ---EEEEe-cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccccc-----
Q 001245 345 ---LKVFN-IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF----- 415 (1115)
Q Consensus 345 ---l~tl~-~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l----- 415 (1115)
.+++. +|... +..++|+ +..+++++.+.+++|+..+..
T Consensus 215 ~~~~~tL~~~h~~~-------------------------------V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 215 QPVSRMIQNASRRK-------------------------------ITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp CCCEEEEECCCSSC-------------------------------CCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEE
T ss_pred ccceeeecccccCc-------------------------------EEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEE
Confidence 34553 22222 2234555 345566666778888764322
Q ss_pred ccCCCceEEEEE--cCCCc-EEEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCCCcccc
Q 001245 416 GDDNRRTEALTT--SIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLEGNLLG 492 (1115)
Q Consensus 416 ~~h~~~V~aVa~--S~Dg~-laSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~G~ll~ 492 (1115)
.+|...|..+++ ++|+. ++++++||+ |+|..+ .+. +.+||..++++ |++|++|+..|+.+.
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------~~~-~spd~~l~a~~--d~~v~lW~~~g~~l~ 325 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------ELH-VTADNIIAPYL--EKKFKKWSTIWNEFN 325 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------SEE-EECCCSSHHHH--HHHHHHTTTTTTSSS
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------cEE-ECCCceEEEEc--CCEEEEEECCCCcee
Confidence 278889999999 99987 788899999 999876 233 66888888876 999999998887777
Q ss_pred ccccccCCEEEEE--ecCCEEEeec
Q 001245 493 GWVAHSSPVIKMA--VGAGYIFTLA 515 (1115)
Q Consensus 493 ~l~gH~~~V~sva--~dg~~laSgS 515 (1115)
.+.+ ...|.+++ +||+.+|+++
T Consensus 326 ~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 326 NYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred eecc-ceEEEEEEECCCCCEEEEEE
Confidence 7766 77899988 4889999886
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.6e-24 Score=242.05 Aligned_cols=253 Identities=7% Similarity=0.040 Sum_probs=176.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCC-
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLD- 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~- 226 (1115)
+.|++|++||+.++..... .. ...|.++++.|+ ++|||.|++|++|+.++....
T Consensus 55 ~~Dg~v~iwd~~~~~~~~~---------------------~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 55 CEDGALHFTQLKDSKTITT---------------------IT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp EETTEEEEEEESSSSCEEE---------------------EE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred CCCCcEEEEECCCCcEEEE---------------------Ee-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 6899999999998876543 11 235667788887 999999999999987641100
Q ss_pred CCCCCcceEEe-ecCCCCEEEEEEeC--CCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccce
Q 001245 227 SDDGFGEVLSW-QAHRGPVLSLCISS--YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (1115)
Q Consensus 227 ~~~~~~~~~~l-~GH~~~V~sVafSp--dG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~ 302 (1115)
.....+....+ .+|.++|.+|+|+| +++ |+|||.||+|++||++++++.... ..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------------------~~~~- 169 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH-------------------SAKS- 169 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE-------------------CCCS-
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE-------------------ecCC-
Confidence 00011213333 37889999999999 887 789999999999999886543110 0111
Q ss_pred ecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEE-EEEecCCceeeEEeccCCCCccccccceEEEEecC
Q 001245 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELL-KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSS 380 (1115)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll-~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~ 380 (1115)
...+.++++++++..+++++ |++|+|||+++++.+ .++
T Consensus 170 --------~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~-------------------------------- 209 (343)
T 3lrv_A 170 --------DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF-------------------------------- 209 (343)
T ss_dssp --------SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC--------------------------------
T ss_pred --------CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE--------------------------------
Confidence 13577889999999999865 789999999877643 222
Q ss_pred CCCccceeeeeeccccceEEeccCcEEEEeccccccc-CCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeec
Q 001245 381 KKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGD-DNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY 457 (1115)
Q Consensus 381 ~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~-h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~g 457 (1115)
.. |...|.+++|+|+|. |++|+ |++|++||+ ++++++++..
T Consensus 210 -----------------------------------~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 210 -----------------------------------PVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp -----------------------------------CCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred -----------------------------------eccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence 22 556788999999998 78888 559999999 7777655543
Q ss_pred ---CCCcEE--EEE--ecCCEEEeeec-ccEEEEEeCC-CccccccccccCCEEEEEe-----cCCEEEeecCCCceEEe
Q 001245 458 ---LPFAVQ--CLC--TFGSQIWVGYM-NGIVQVLDLE-GNLLGGWVAHSSPVIKMAV-----GAGYIFTLANHGGIRGW 523 (1115)
Q Consensus 458 ---H~~~V~--sla--~dG~~LaSGs~-DGtIrlWD~~-G~ll~~l~gH~~~V~sva~-----dg~~laSgS~DgtIRlW 523 (1115)
|...+. +++ ++|++|++|+. |+.|+||+.+ +.. .|.. .++..+++ +++.+++++.|+++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK--NWTK--DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC--SEEE--EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc--ceEe--cCceeEecCccccccceeEEEecCCceEEE
Confidence 444443 466 78999999998 9999999985 221 1221 33444432 45678888888888887
Q ss_pred ee
Q 001245 524 NV 525 (1115)
Q Consensus 524 dl 525 (1115)
-.
T Consensus 330 ~~ 331 (343)
T 3lrv_A 330 LK 331 (343)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.4e-24 Score=241.49 Aligned_cols=231 Identities=9% Similarity=0.000 Sum_probs=169.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeecc
Q 001245 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSL 278 (1115)
Q Consensus 199 ~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~ 278 (1115)
+.+++.+|+||+.||+|++||+.++. .+.++. .+.|.+++|+|+ ++|||.|++|++|+.........+
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~--------~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~ 111 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSK--------TITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDS 111 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSS--------CEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEET
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCc--------EEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeec
Confidence 34578899999999999999998742 344454 567889999997 999999999999998753222111
Q ss_pred CCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC--CCCEEEeec-CCeEEEEEcCCccEEEEEecCCcee
Q 001245 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH--SRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIE 355 (1115)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~--~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~ 355 (1115)
.. ... +..+ .......+.++++.+ ++..+++++ |++|++||++++++++.+..
T Consensus 112 ~~--~~~-----------~~~~------~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----- 167 (343)
T 3lrv_A 112 KT--NKV-----------LREI------EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA----- 167 (343)
T ss_dssp TT--CCE-----------EEEE------ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC-----
T ss_pred CC--cce-----------eEEe------ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec-----
Confidence 10 110 0000 001125688899998 888888776 78999999998887544311
Q ss_pred eEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EE
Q 001245 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW 434 (1115)
Q Consensus 356 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-la 434 (1115)
.+...+.+++++|||. ++
T Consensus 168 -------------------------------------------------------------~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 168 -------------------------------------------------------------KSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp -------------------------------------------------------------CSSCCCCEEEECTTSCEEE
T ss_pred -------------------------------------------------------------CCCCceEEEEECCCCCEEE
Confidence 1122467789999987 68
Q ss_pred EEeCCCeEEEEcC-CCCee-EEeec-CCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccc---ccCCEE--E
Q 001245 435 TGGANGLLLQWDP-NGNRL-QDFQY-LPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA---HSSPVI--K 503 (1115)
Q Consensus 435 SGS~DgtIklWD~-tG~~l-~tl~g-H~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g---H~~~V~--s 503 (1115)
+|+.||+|++||+ +++++ .++.+ |..+|++|+ ++|.+|++|+ |++|++||+. ++.+..+.. |...+. +
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceE
Confidence 9999999999999 78887 88998 999999999 6899999999 4599999987 655555443 555544 3
Q ss_pred EEe--cCCEEEeecC-CCceEEeeecC
Q 001245 504 MAV--GAGYIFTLAN-HGGIRGWNVTS 527 (1115)
Q Consensus 504 va~--dg~~laSgS~-DgtIRlWdl~~ 527 (1115)
+++ +|+++++++. |+.|++|++..
T Consensus 266 ~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 664 7899999988 99999999865
No 122
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.92 E-value=6.1e-23 Score=237.92 Aligned_cols=237 Identities=16% Similarity=0.167 Sum_probs=178.0
Q ss_pred ceeeEEEEEe-CC-eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 132 GCFLRTIVCT-EE-QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 132 ~~~l~~l~~~-~~-~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
...+..++.+ ++ .|++ +.|+.|++||+.++..... ...| ...|.++++ ++.+|++
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------~~~~-~~~v~~~~~--~~~~l~~ 191 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT-------------------MAGH-QARVGCLSW--NRHVLSS 191 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------------------ECCC-SSCEEEEEE--ETTEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-------------------ecCC-CCceEEEEE--CCCEEEE
Confidence 4456666665 33 4444 4799999999998876543 1245 789999999 4579999
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 209 GS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
|+.||+|++||+.... .....+.+|.+.|.+++|+|+|. |++|+.|++|++||+.++.....
T Consensus 192 ~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~---------- 254 (401)
T 4aez_A 192 GSRSGAIHHHDVRIAN-------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT---------- 254 (401)
T ss_dssp EETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE----------
T ss_pred EcCCCCEEEEecccCc-------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE----------
Confidence 9999999999998421 34677899999999999999997 78999999999999987654321
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEeec---CCeEEEEEcCCccEEEEEecCCceeeEEeccCC
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLL 363 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S~s---d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~ 363 (1115)
+.+|. ..+.++++++++ ..+++++ +++|++||+.++++++.+..+
T Consensus 255 ---------~~~~~----------~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~------------ 303 (401)
T 4aez_A 255 ---------KTNHN----------AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG------------ 303 (401)
T ss_dssp ---------ECCCS----------SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS------------
T ss_pred ---------ecCCc----------ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC------------
Confidence 22333 567788888855 5556654 789999999998877665311
Q ss_pred CCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEE--EeCCC
Q 001245 364 PDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWT--GGANG 440 (1115)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laS--GS~Dg 440 (1115)
..|.++++++++. +++ |+.||
T Consensus 304 --------------------------------------------------------~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 304 --------------------------------------------------------SQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp --------------------------------------------------------SCEEEEEECSSSSEEEEEECTTTC
T ss_pred --------------------------------------------------------CcEEEEEECCCCCeEEEEeecCCC
Confidence 2356778888887 566 55899
Q ss_pred eEEEEcC-CCCeeE--EeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccc
Q 001245 441 LLLQWDP-NGNRLQ--DFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 441 tIklWD~-tG~~l~--tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l 494 (1115)
+|++||+ +++... .+.+|...|++++ ++|++|++|+.||+|++||+. ++++...
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 9999999 665544 4779999999998 789999999999999999986 6665544
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=1.8e-22 Score=234.51 Aligned_cols=262 Identities=12% Similarity=0.065 Sum_probs=198.3
Q ss_pred CCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
++.++++ .|++|++||++++..... .. +-....| ...|.++++++++.++++++.|++|++||
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~--~~~~~~~-~~~v~~~~~~~~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRL------------SP--PEKYKKK-LGFVETISIPEHNELWVSQMQANAVHVFD 197 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEE------------CC--CHHHHTT-CCEEEEEEEGGGTEEEEEEGGGTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeee------------cC--ccccccc-CCceeEEEEcCCCEEEEEECCCCEEEEEE
Confidence 4566663 577899999998876542 00 0011134 67899999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeee
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l 297 (1115)
++++ +...++.+|...|.+++|+|+|+ | ++++.|++|++||+.+++....+
T Consensus 198 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~------------------- 250 (433)
T 3bws_A 198 LKTL--------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT------------------- 250 (433)
T ss_dssp TTTC--------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC-------------------
T ss_pred CCCc--------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe-------------------
Confidence 9863 34667889999999999999997 5 46668999999999876543111
Q ss_pred cccceecceeeeecCCeEEEEEeCCCCEEEeec---------CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccc
Q 001245 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---------FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1115)
Q Consensus 298 ~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s---------d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~ 368 (1115)
..+ ..+..+++++++..+++++ ++.|++||+.+++++..+..
T Consensus 251 ~~~-----------~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~------------------ 301 (433)
T 3bws_A 251 DKI-----------GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP------------------ 301 (433)
T ss_dssp CCC-----------SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE------------------
T ss_pred cCC-----------CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC------------------
Confidence 111 2355677788887777765 56899999998876554310
Q ss_pred cccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-E-EEEeCCCeEEEEc
Q 001245 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGANGLLLQWD 446 (1115)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-l-aSGS~DgtIklWD 446 (1115)
...+.+++++|++. + ++++.|++|++||
T Consensus 302 --------------------------------------------------~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 302 --------------------------------------------------PGNKRHIVSGNTENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp --------------------------------------------------EECEEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred --------------------------------------------------CCCcceEEECCCCCEEEEEecCCCEEEEEE
Confidence 01234577888884 4 6778999999999
Q ss_pred C-CCCeeEEeecCCCcEEEEE--ecCCEEEeeec---------------ccEEEEEeCC-CccccccccccCCEEEEEe-
Q 001245 447 P-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYM---------------NGIVQVLDLE-GNLLGGWVAHSSPVIKMAV- 506 (1115)
Q Consensus 447 ~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~---------------DGtIrlWD~~-G~ll~~l~gH~~~V~sva~- 506 (1115)
+ +++++..+. |...+.+++ ++|++|++++. ||+|++||++ ++++..+.++ ..+.++++
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 409 (433)
T 3bws_A 332 LKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVS 409 (433)
T ss_dssp TTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEEC
T ss_pred CCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEc
Confidence 9 788888776 667888888 68999998876 5799999986 7887777764 46888875
Q ss_pred -cCCEEEeec-CCCceEEeeec
Q 001245 507 -GAGYIFTLA-NHGGIRGWNVT 526 (1115)
Q Consensus 507 -dg~~laSgS-~DgtIRlWdl~ 526 (1115)
+|++|++++ .|++|++|++.
T Consensus 410 ~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 410 PDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTSCEEEEEETTTTEEEEEEET
T ss_pred CCCCEEEEEECCCCeEEEEEec
Confidence 788888776 59999999985
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=5.1e-23 Score=242.51 Aligned_cols=238 Identities=10% Similarity=0.026 Sum_probs=182.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe----------------------------------
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW---------------------------------- 237 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l---------------------------------- 237 (1115)
.++.|++|+++|++|+++ .++.|++||+.++.. .+.+.+|
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNH-----WEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTE-----EEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCc-----ceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 378899999999977766 578999999887540 0012222
Q ss_pred --------------------ecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEEeCC--CcceeeccCCCcceeEEEEeeee
Q 001245 238 --------------------QAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWE--AIEKALSLKPEERHTAALIVERS 293 (1115)
Q Consensus 238 --------------------~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvWdl~--t~~~~l~~~~~~~~~~a~~~~~~ 293 (1115)
.+|.+.|++++|+|+|+ | ++|+.||+|+|||+. ++.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~---------------- 142 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL---------------- 142 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE----------------
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee----------------
Confidence 25666899999999998 5 799999999999998 5543311
Q ss_pred eeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccc
Q 001245 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1115)
Q Consensus 294 ~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~ 372 (1115)
+..|. ....+.++++++++..|++++ ++.|++||+.+++....
T Consensus 143 ---~~~~~--------~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------- 186 (450)
T 2vdu_B 143 ---RKRFC--------FSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKF------------------------- 186 (450)
T ss_dssp ---EEEEE--------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSC-------------------------
T ss_pred ---eeccc--------CCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccc-------------------------
Confidence 11111 125678899999999888876 58899999876542110
Q ss_pred eEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC---Cc-EEEEeCCCeEEEEcC-
Q 001245 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID---GM-IWTGGANGLLLQWDP- 447 (1115)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D---g~-laSGS~DgtIklWD~- 447 (1115)
....+.+|...|.+++++|+ +. |++|+.|++|++||+
T Consensus 187 --------------------------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 187 --------------------------------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp --------------------------------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred --------------------------------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence 00013456678899999999 85 899999999999999
Q ss_pred CCCeeEE-eecCCCcEEEEEe-cCCEEEeeecccEEEEEeCC-Cccccccccc-------------------------cC
Q 001245 448 NGNRLQD-FQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH-------------------------SS 499 (1115)
Q Consensus 448 tG~~l~t-l~gH~~~V~sla~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH-------------------------~~ 499 (1115)
+++++.+ +.+|...|+++++ +|++|++|+.|++|+|||+. |+++..+..| ..
T Consensus 229 ~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 229 QCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 7888888 6699999999996 79999999999999999987 7877777633 35
Q ss_pred CEEEEEe--cCCEEEeec-CCCceEEeee
Q 001245 500 PVIKMAV--GAGYIFTLA-NHGGIRGWNV 525 (1115)
Q Consensus 500 ~V~sva~--dg~~laSgS-~DgtIRlWdl 525 (1115)
.|.+|++ +++++++++ .|++|++|++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 6888874 788999988 8999999999
No 125
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.91 E-value=6.7e-22 Score=218.45 Aligned_cols=235 Identities=15% Similarity=0.182 Sum_probs=170.0
Q ss_pred cceeeEEEEEe-CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEE
Q 001245 131 IGCFLRTIVCT-EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVW 207 (1115)
Q Consensus 131 ~~~~l~~l~~~-~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~La 207 (1115)
.+..+..++.+ ++++++ +.|++|++||++++..... ...| ...+.+++. ++.+|+
T Consensus 66 ~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~-------------------~~~h-~~~~~~~~~--~~~~l~ 123 (318)
T 4ggc_A 66 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-------------------MTSH-SARVGSLSW--NSYILS 123 (318)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-------------------EECC-SSCEEEEEE--ETTEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE-------------------ecCc-cceEEEeec--CCCEEE
Confidence 34456666666 344444 6899999999999887653 2245 566666554 568999
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
+|+.|+.+++|+...+. .....+.+|...+.+++++++|+ |+||+.|++|++||+.+++......
T Consensus 124 s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------- 189 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAE-------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL------- 189 (318)
T ss_dssp EEETTSEEEEEETTSSS-------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS-------
T ss_pred EEecCCceEeeecCCCc-------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce-------
Confidence 99999999999987632 34667899999999999999998 7899999999999998765331100
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEE-E--eec-CCeEEEEEcCCccEEEEEecCCceeeEEeccC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKV-W--SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSL 362 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v-~--S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~ 362 (1115)
.....+ .+.+..++..+.+..+ . +++ +++|++||..++........
T Consensus 190 --------~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~------------ 239 (318)
T 4ggc_A 190 --------QTFTQH----------QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA------------ 239 (318)
T ss_dssp --------EEECCC----------CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC------------
T ss_pred --------eeeccc----------CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc------------
Confidence 001111 1445566665544333 2 222 57899999887765543321
Q ss_pred CCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EE--EEeCC
Q 001245 363 LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW--TGGAN 439 (1115)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-la--SGS~D 439 (1115)
...+..+++++++. ++ +|+.|
T Consensus 240 --------------------------------------------------------~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 240 --------------------------------------------------------HSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp --------------------------------------------------------SSCEEEEEEETTTTEEEEEECTTT
T ss_pred --------------------------------------------------------eeeeeeeeecccccceEEEEEcCC
Confidence 12234455555554 44 45589
Q ss_pred CeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 440 gtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
++|++||+ +|++++++.+|.+.|++|+ |||++||||+.||+|+|||+.
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 99999999 8999999999999999999 789999999999999999974
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=4.7e-22 Score=227.66 Aligned_cols=229 Identities=10% Similarity=0.090 Sum_probs=156.3
Q ss_pred ceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeec
Q 001245 233 EVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (1115)
Q Consensus 233 ~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s 311 (1115)
.+.++.+|.++|++|+|+|||+ |++|+.| .+++|++++++..... +.
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~---------------------~~---------- 58 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQ---------------------EM---------- 58 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEE---------------------EC----------
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeee---------------------ec----------
Confidence 3446789999999999999998 5666655 5899998875443110 00
Q ss_pred CCeEEEEEeCCCCEEE--eecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceee
Q 001245 312 SDIKNLLSDHSRAKVW--SAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSF 389 (1115)
Q Consensus 312 ~~v~~las~~~~~~v~--S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v 389 (1115)
..+..++..+.+..++ ++++++|+|||+.+++++..+..+.. +..+.+++.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~-v~~v~~~~~-------------------------- 111 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAP-VKDLFLSRE-------------------------- 111 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSC-EEEEEECSS--------------------------
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCc-eEEEEEcCC--------------------------
Confidence 0122334444444443 23457999999999999988864443 233333322
Q ss_pred eeeccccceEEeccCcEEEEecccc--cccCC-CceEEEEEcCCCcEEE--EeCCCeEEEEcC-CCC-------------
Q 001245 390 GFFQRSRNAIMGAADAVRRVAAKGG--FGDDN-RRTEALTTSIDGMIWT--GGANGLLLQWDP-NGN------------- 450 (1115)
Q Consensus 390 ~f~~~~~~~~~Gs~d~v~~~~~~g~--l~~h~-~~V~aVa~S~Dg~laS--GS~DgtIklWD~-tG~------------- 450 (1115)
.++.+.++.++.|+.... ..... .....+++++ ..++. |+.||+|++||+ +++
T Consensus 112 -------~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~ 183 (355)
T 3vu4_A 112 -------FIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA 183 (355)
T ss_dssp -------EEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCEEEEECCC---------------
T ss_pred -------EEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccc
Confidence 122233445666654311 11111 1233455666 55554 688999999999 554
Q ss_pred ---eeEEeecCCCcEEEEE--ecCCEEEeeecccE-EEEEeCC-Cccccccc-c-ccCCEEEEEe--cCCEEEeecCCCc
Q 001245 451 ---RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGI-VQVLDLE-GNLLGGWV-A-HSSPVIKMAV--GAGYIFTLANHGG 519 (1115)
Q Consensus 451 ---~l~tl~gH~~~V~sla--~dG~~LaSGs~DGt-IrlWD~~-G~ll~~l~-g-H~~~V~sva~--dg~~laSgS~Dgt 519 (1115)
+++++.+|...|++++ ++|++||+|+.||+ |+|||+. |+++.++. | |.+.|.++++ +|++|+++|.|++
T Consensus 184 ~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 184 ILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp ---CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred cCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence 3889999999999999 78999999999998 9999997 89999998 6 9999999996 7899999999999
Q ss_pred eEEeeecCC
Q 001245 520 IRGWNVTSP 528 (1115)
Q Consensus 520 IRlWdl~~p 528 (1115)
|++||+..+
T Consensus 264 v~iw~~~~~ 272 (355)
T 3vu4_A 264 LHVFEIFND 272 (355)
T ss_dssp EEEEESSCC
T ss_pred EEEEEccCC
Confidence 999999764
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=1.4e-22 Score=229.87 Aligned_cols=207 Identities=11% Similarity=0.020 Sum_probs=133.2
Q ss_pred CCceEEEEEcCC----CCEEEEEeC--------------------CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEE
Q 001245 191 VSSVMCMVGDEA----SGVVWSGHR--------------------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLS 246 (1115)
Q Consensus 191 ~~~V~~la~s~d----g~~LaSGS~--------------------DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~s 246 (1115)
.+.|.+|+++|+ ++++++|+. |++|++|++... .+.+..+.+|...|+.
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d-------G~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED-------GGGKENQFLMPPEETI 183 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT-------SCEEEEEEECCCSSCE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC-------CceeeeeccCCCceee
Confidence 447889999999 889888774 888888888531 1345577899999999
Q ss_pred EEEeC---CCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecc---eeeeecCCeEEEEE
Q 001245 247 LCISS---YGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNG---FSSILTSDIKNLLS 319 (1115)
Q Consensus 247 VafSp---dG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~---~~~~~s~~v~~las 319 (1115)
++|++ ++. |+|||.|+||||||++++++..++.. +|..... +++.|++. .++..
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g------------------~~~~v~~v~~vafSpdG~-~lvs~ 244 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI------------------DDSYQASVCHKAYSEMGL-LFIVL 244 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC------------------CC---CCCEEEEEEETTE-EEEEE
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC------------------CCcceeeeEEEEECCCCC-EEEEe
Confidence 99999 556 78999999999999999876633311 1111111 13334332 22222
Q ss_pred eCCCC--EEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecccc
Q 001245 320 DHSRA--KVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSR 396 (1115)
Q Consensus 320 ~~~~~--~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~ 396 (1115)
+++.. .+++++ |++|++||..+|++++++... + + +
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~--------~-p-------------------------------~-- 282 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC--------L-P-------------------------------P-- 282 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEEC--------C-C-------------------------------T--
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee--------c-c-------------------------------C--
Confidence 22111 235554 689999999999988765210 0 0 0
Q ss_pred ceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEE-EEE--ecCCEE
Q 001245 397 NAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQ-CLC--TFGSQI 472 (1115)
Q Consensus 397 ~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~-sla--~dG~~L 472 (1115)
+|...+.+..++ +..+++|+.|++|||||+ +|+++++|.+|...|. +++ |||++|
T Consensus 283 --------------------Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 283 --------------------GQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp --------------------TCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred --------------------CCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 000011111112 224789999999999999 8999999999988655 466 899999
Q ss_pred EeeecccEEEEEeC
Q 001245 473 WVGYMNGIVQVLDL 486 (1115)
Q Consensus 473 aSGs~DGtIrlWD~ 486 (1115)
|||+.|++|||||.
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999995
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=1e-21 Score=230.44 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=173.3
Q ss_pred eEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCC-EEEEEeCCCeEEEEEC
Q 001245 144 QLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG-VVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 144 ~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~-~LaSGS~DgtIrlWdl 220 (1115)
.+++ +.|++|++||+.+...... ..+ ..........| ...|.+++|+|++. +|+||+.||+|++|++
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~--------~~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPE--------PSG-ECQPDLRLRGH-QKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCC--------TTC-CCCCSEEEECC-SSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred cEEEEECCCCcEEEEECCCcccccC--------ccc-cCCCcEEecCC-CCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence 3444 5789999999976321110 000 00011122345 77899999999988 9999999999999999
Q ss_pred CCCCCCCCCCCcceEEeecCCCCEEEEEEeCC-Cc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeec
Q 001245 221 NARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR 298 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~ 298 (1115)
..+.. ..........+.+|.+.|.+|+|+|+ +. |++|+.||+|++||+.+..... ....+.
T Consensus 212 ~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~----------------~~~~~~ 274 (430)
T 2xyi_A 212 NATPK-EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK----------------PSHTVD 274 (430)
T ss_dssp TSCCB-GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS----------------CSEEEE
T ss_pred CCCCC-CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc----------------ceeEee
Confidence 86321 00011124567899999999999994 44 6899999999999998753110 001122
Q ss_pred ccceecceeeeecCCeEEEEEeCCCC-EEEeec-CCeEEEEEcCCc-cEEEEEecCCceeeEEeccCCCCccccccceEE
Q 001245 299 SHLSVNGFSSILTSDIKNLLSDHSRA-KVWSAG-FLSFALWDARTR-ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 299 ~h~~~~~~~~~~s~~v~~las~~~~~-~v~S~s-d~tI~lWD~~tg-~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
+|. ..+.++++++++. .+++++ +++|+|||+++. ..+.+
T Consensus 275 ~~~----------~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~---------------------------- 316 (430)
T 2xyi_A 275 AHT----------AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------------------------- 316 (430)
T ss_dssp CCS----------SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE----------------------------
T ss_pred cCC----------CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE----------------------------
Confidence 343 6788999998776 566665 689999998763 22222
Q ss_pred EEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc--EEEEeCCCeEEEEcC-C----
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM--IWTGGANGLLLQWDP-N---- 448 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~--laSGS~DgtIklWD~-t---- 448 (1115)
+..|...|.+++++|++. +++|+.|++|++||+ .
T Consensus 317 ---------------------------------------~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 317 ---------------------------------------FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp ---------------------------------------EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred ---------------------------------------eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 223455678899999884 789999999999999 3
Q ss_pred ----------CCeeEEeecCCCcEEEEE--ecCC-EEEeeecccEEEEEeCCC
Q 001245 449 ----------GNRLQDFQYLPFAVQCLC--TFGS-QIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 449 ----------G~~l~tl~gH~~~V~sla--~dG~-~LaSGs~DGtIrlWD~~G 488 (1115)
.+++..+.+|...|++++ ++|. +|++++.||+|+||++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 277888999999999999 6788 999999999999999863
No 129
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=1.4e-20 Score=215.50 Aligned_cols=251 Identities=8% Similarity=0.073 Sum_probs=185.1
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
.++++|+.|++|++||+.++ +....+.+|. .+.+++|+|+|+ | ++++.|++|++||+.+++....+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~--------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~--- 70 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN--------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV--- 70 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT--------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---
T ss_pred EEEEEcCCCCEEEEEECCCC--------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---
Confidence 47899999999999999873 3455677775 489999999997 5 68889999999999887543111
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-c-CCeEEEEEcCCccEEEEEecCCceeeEEe
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-FLSFALWDARTRELLKVFNIDGQIENRVD 359 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~ 359 (1115)
..+ ..+.++++++++..++.+ . +++|++||+.+++.+..+..+..+ ..+
T Consensus 71 ----------------~~~-----------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~- 121 (391)
T 1l0q_A 71 ----------------PAG-----------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP-LGL- 121 (391)
T ss_dssp ----------------ECS-----------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEE-
T ss_pred ----------------ECC-----------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCc-ceE-
Confidence 111 256788888888877544 3 489999999999998887654433 233
Q ss_pred ccCCCCccccccceEEEEecCCCCccceeeeeeccccce-EEecc-CcEEEEecc-ccc---ccCCCceEEEEEcCCCc-
Q 001245 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNA-IMGAA-DAVRRVAAK-GGF---GDDNRRTEALTTSIDGM- 432 (1115)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~-~~Gs~-d~v~~~~~~-g~l---~~h~~~V~aVa~S~Dg~- 432 (1115)
.|++++..+ +++.. +.+..|+.. +.. ......+.++++++||.
T Consensus 122 ------------------------------~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 122 ------------------------------ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK 171 (391)
T ss_dssp ------------------------------EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSE
T ss_pred ------------------------------EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCE
Confidence 344444333 34433 345555542 111 11234568899999996
Q ss_pred E-EEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeee---cccEEEEEeCC-CccccccccccCCEEEE
Q 001245 433 I-WTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY---MNGIVQVLDLE-GNLLGGWVAHSSPVIKM 504 (1115)
Q Consensus 433 l-aSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs---~DGtIrlWD~~-G~ll~~l~gH~~~V~sv 504 (1115)
+ ++++.|++|++||+ +++++..+.. ...+.+++ ++|++|++++ .+++|++||+. ++.+..+..|.. +.++
T Consensus 172 l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 249 (391)
T 1l0q_A 172 VYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI 249 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE
Confidence 5 57888999999999 7787777764 56788887 6899999998 68999999987 788888888765 6777
Q ss_pred Ee--cCCEE-EeecCCCceEEeeecC
Q 001245 505 AV--GAGYI-FTLANHGGIRGWNVTS 527 (1115)
Q Consensus 505 a~--dg~~l-aSgS~DgtIRlWdl~~ 527 (1115)
++ +|+++ ++++.|++|++||+.+
T Consensus 250 ~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEccCCCEEEEEcCCCCEEEEEECCC
Confidence 64 68877 6889999999999875
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.3e-22 Score=251.02 Aligned_cols=239 Identities=12% Similarity=0.132 Sum_probs=176.8
Q ss_pred eeeEEEEEe-CC-eEEE-eCCCCEEEEeCCCC--cccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC--CCE
Q 001245 133 CFLRTIVCT-EE-QLWA-GGENGLRVWNLKEL--YDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA--SGV 205 (1115)
Q Consensus 133 ~~l~~l~~~-~~-~l~a-g~D~tvrvWdl~tg--~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d--g~~ 205 (1115)
..+..++.+ ++ .+.+ +.|++|+|||+.++ .... ....| .++|.|++|+++ +.+
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h-~~~V~~l~~s~~~~~~~ 69 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID-------------------TLTGH-EGPVWRVDWAHPKFGTI 69 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEE-------------------EECCC-SSCEEEEEECCTTSCSE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccce-------------------eccCC-cCceEEEEecCCCCCCE
Confidence 445556555 33 3444 57999999998743 2222 12245 789999999988 999
Q ss_pred EEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC--Cc-EEEEeCCCcEEEEeCCCcceeeccCCCc
Q 001245 206 VWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY--GD-LWSGSEGGGIKIWPWEAIEKALSLKPEE 282 (1115)
Q Consensus 206 LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd--G~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~ 282 (1115)
|+||+.||+|++||+.++. ......+.+|.++|++++|+|+ |. |++|+.||+|++||+.+......
T Consensus 70 l~s~s~Dg~I~vwd~~~~~------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~----- 138 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGR------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----- 138 (753)
T ss_dssp EEEEETTSCEEEEEEETTE------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC-----
T ss_pred EEEEeCCCeEEEEECCCCc------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce-----
Confidence 9999999999999998632 1245678899999999999999 76 78999999999999987532210
Q ss_pred ceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-------------CCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 283 RHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-------------SRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 283 ~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-------------~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
..+.+|. ..+.++++++ ++..+++++ |++|++||++++.....+
T Consensus 139 ------------~~~~~~~----------~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~ 196 (753)
T 3jro_A 139 ------------IIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (753)
T ss_dssp ------------EEEECCS----------SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred ------------eEeecCC----------CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence 1112232 4566777766 356666665 789999998765321110
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS 428 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S 428 (1115)
...+.+|...|.+++++
T Consensus 197 ---------------------------------------------------------------~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 197 ---------------------------------------------------------------ESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp ---------------------------------------------------------------EEEECCCSSCEEEEEEC
T ss_pred ---------------------------------------------------------------eeeecCCCCcEEEEEec
Confidence 00134567788999999
Q ss_pred CC---Cc-EEEEeCCCeEEEEcC-CCC-----eeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 429 ID---GM-IWTGGANGLLLQWDP-NGN-----RLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 429 ~D---g~-laSGS~DgtIklWD~-tG~-----~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
|+ +. +++|+.||+|++||+ +++ .+....+|...|++++ ++|++|++|+.||+|++||++
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 99 66 799999999999999 543 3444556888999888 789999999999999999986
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=8.5e-20 Score=221.86 Aligned_cols=305 Identities=11% Similarity=0.036 Sum_probs=207.4
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
++++++ +.|++|+|||.+++....+ ...++ .+.+++|+|+|++|++++.|++|++||
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~------------------i~~g~---~~~~v~~spdg~~l~v~~~d~~V~v~D 206 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKV------------------IDTGY---AVHISRMSASGRYLLVIGRDARIDMID 206 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEE------------------EECST---TEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEE------------------EecCc---ccceEEECCCCCEEEEECCCCeEEEEE
Confidence 445555 4788999999999887653 11122 378999999999999999999999999
Q ss_pred C--CCCCCCCCCCCcceEEeecCCCCEEEEEEeC----CCc-EEEEe-CCCcEEEEeCCCcceeeccCCCcceeEEEEee
Q 001245 220 M--NARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1115)
Q Consensus 220 l--~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp----dG~-L~SgS-~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~ 291 (1115)
+ .++ +.+.++.. ...+.+|+|+| ||+ |++++ .|++|+|||..++++...+.
T Consensus 207 ~~~~t~--------~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~------------ 265 (543)
T 1nir_A 207 LWAKEP--------TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS------------ 265 (543)
T ss_dssp TTSSSC--------EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE------------
T ss_pred CcCCCC--------cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec------------
Confidence 9 542 34556664 44579999999 998 67776 58999999998876542211
Q ss_pred eeeeeecccceecceeeeecCCeEEEEEeCCCCEEE-eec-CCeEEEEEcCCccEEE--EEecCCceeeEEeccCCCCcc
Q 001245 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLK--VFNIDGQIENRVDMSLLPDFA 367 (1115)
Q Consensus 292 ~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~-S~s-d~tI~lWD~~tg~ll~--tl~~~~~~~~~v~~s~~~~~~ 367 (1115)
..+.. ..+..+.+...+..+++++++..++ +.. +++|.+||..+++.++ ++. .+..
T Consensus 266 -----~~g~~-~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~------------- 325 (543)
T 1nir_A 266 -----TRGMT-VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPF------------- 325 (543)
T ss_dssp -----CCEEC-SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSS-------------
T ss_pred -----ccCcc-cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcC-------------
Confidence 10000 0001111223567778887665544 443 5789999998876544 221 1111
Q ss_pred ccccceEEEEecCCCCccceeeeeeccccceEEec--cCcEEEEecc-cccc--------cCCCceEEEEEcCC-CcE-E
Q 001245 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA--ADAVRRVAAK-GGFG--------DDNRRTEALTTSID-GMI-W 434 (1115)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs--~d~v~~~~~~-g~l~--------~h~~~V~aVa~S~D-g~l-a 434 (1115)
...++|+++++.+++++ .+.+..|+.. +.+. .|......+ ++|+ |.+ +
T Consensus 326 ------------------~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 326 ------------------LHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp ------------------CCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEE
T ss_pred ------------------ccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEE
Confidence 12345666666544332 3566667653 2221 143333333 4565 665 5
Q ss_pred EEe-CCCeEEEEcC-C-------CCeeEEeecCCCcEEEEE--ecCCEEEeee-------cccEEEEEeCC-Cccc-ccc
Q 001245 435 TGG-ANGLLLQWDP-N-------GNRLQDFQYLPFAVQCLC--TFGSQIWVGY-------MNGIVQVLDLE-GNLL-GGW 494 (1115)
Q Consensus 435 SGS-~DgtIklWD~-t-------G~~l~tl~gH~~~V~sla--~dG~~LaSGs-------~DGtIrlWD~~-G~ll-~~l 494 (1115)
|++ .|++|++||. + +++++++.+|...+..|+ |+|++|++++ .+++|.|||++ ++.. ..+
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~ 466 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL 466 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe
Confidence 665 6899999999 6 799999999998888888 8999999998 37899999986 5544 332
Q ss_pred --------ccccCCEEEEEe--cCCEEEee-----cCCCceEEeeecC
Q 001245 495 --------VAHSSPVIKMAV--GAGYIFTL-----ANHGGIRGWNVTS 527 (1115)
Q Consensus 495 --------~gH~~~V~sva~--dg~~laSg-----S~DgtIRlWdl~~ 527 (1115)
..|...|..+++ ||++++.+ +.|++|.|||..+
T Consensus 467 ~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 467 PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 514 (543)
T ss_dssp CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred echhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence 456778899885 89988854 3589999999876
No 132
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.85 E-value=5.7e-20 Score=213.37 Aligned_cols=229 Identities=14% Similarity=0.105 Sum_probs=174.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceE-----EeecCCCCEEEEEEeCCCc-EEEEeCCCcEE
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-----SWQAHRGPVLSLCISSYGD-LWSGSEGGGIK 265 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~-----~l~GH~~~V~sVafSpdG~-L~SgS~DgtIr 265 (1115)
..+.+++|+|++.++++++.|++|++||+.++. ... .+.+|.+.|.+++|+++|. +++++.|++|+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ--------TVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC--------EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe--------EeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 346689999988899999999999999998743 222 3568999999999999998 67999999999
Q ss_pred EEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEE-ee-cCCeEEEEEcCCcc
Q 001245 266 IWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SA-GFLSFALWDARTRE 343 (1115)
Q Consensus 266 vWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~-S~-sd~tI~lWD~~tg~ 343 (1115)
+||+++++.... +..|. ..+.++++++++..++ ++ .+++|++||+++++
T Consensus 195 ~~d~~~~~~~~~-------------------~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 195 VFDLKTLAYKAT-------------------VDLTG----------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp EEETTTCCEEEE-------------------EECSS----------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEECCCceEEEE-------------------EcCCC----------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 999987654311 11222 4567888888888775 44 36899999999888
Q ss_pred EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceE
Q 001245 344 LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTE 423 (1115)
Q Consensus 344 ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~ 423 (1115)
.+..+..+ ..+.
T Consensus 246 ~~~~~~~~--------------------------------------------------------------------~~~~ 257 (433)
T 3bws_A 246 EIRKTDKI--------------------------------------------------------------------GLPR 257 (433)
T ss_dssp EEEECCCC--------------------------------------------------------------------SEEE
T ss_pred EEEEecCC--------------------------------------------------------------------CCce
Confidence 76554211 1245
Q ss_pred EEEEcCCCc-EEEEe--------CCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEE-EeeecccEEEEEeCC-Cc
Q 001245 424 ALTTSIDGM-IWTGG--------ANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQI-WVGYMNGIVQVLDLE-GN 489 (1115)
Q Consensus 424 aVa~S~Dg~-laSGS--------~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~L-aSGs~DGtIrlWD~~-G~ 489 (1115)
+++++|+|. +++++ .|++|++||+ +++++..+ .|...+.+++ ++|++| ++++.|++|++||++ ++
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 677788875 66666 5899999999 67776665 4556788887 678755 666899999999997 66
Q ss_pred cccccccccCCEEEEEe--cCCEEEeecC---------------CCceEEeeecC
Q 001245 490 LLGGWVAHSSPVIKMAV--GAGYIFTLAN---------------HGGIRGWNVTS 527 (1115)
Q Consensus 490 ll~~l~gH~~~V~sva~--dg~~laSgS~---------------DgtIRlWdl~~ 527 (1115)
++..+. |...+.++++ +|+++++++. ||.|++||+.+
T Consensus 337 ~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 337 VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 666664 7778999885 6888887765 67999999865
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=8.7e-20 Score=213.86 Aligned_cols=234 Identities=12% Similarity=0.046 Sum_probs=168.9
Q ss_pred CCEEEEEeCC------CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC---cEEEEeCCCc
Q 001245 203 SGVVWSGHRD------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG---GIKIWPWEAI 272 (1115)
Q Consensus 203 g~~LaSGS~D------gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg---tIrvWdl~t~ 272 (1115)
+..|+.++.+ ++|++||+++ .....+.+|.+.|.+++|||||+ |++++.|+ +|++||++++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g---------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG---------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS---------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC---------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 5677777665 7999999985 23567889999999999999998 88888885 9999999886
Q ss_pred ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEE-eec-C--CeEEEEEcCCccEEEEE
Q 001245 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAG-F--LSFALWDARTRELLKVF 348 (1115)
Q Consensus 273 ~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~-S~s-d--~tI~lWD~~tg~ll~tl 348 (1115)
+... +..|. ..+.++++++++..|+ +++ + ..|.+||+.++++. .+
T Consensus 214 ~~~~--------------------l~~~~----------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l 262 (415)
T 2hqs_A 214 AVRQ--------------------VASFP----------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV 262 (415)
T ss_dssp CEEE--------------------EECCS----------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC
T ss_pred cEEE--------------------eecCC----------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC
Confidence 5431 11122 3566788888888776 543 3 35999999998863 44
Q ss_pred ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc-C---cEEEEecc-c---ccccCCC
Q 001245 349 NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-D---AVRRVAAK-G---GFGDDNR 420 (1115)
Q Consensus 349 ~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~-d---~v~~~~~~-g---~l~~h~~ 420 (1115)
..+...+..+ .|+++++.++.++. + .+.+|+.. + .+..+..
T Consensus 263 ~~~~~~~~~~-------------------------------~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~ 311 (415)
T 2hqs_A 263 TDGRSNNTEP-------------------------------TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS 311 (415)
T ss_dssp CCCSSCEEEE-------------------------------EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred cCCCCcccce-------------------------------EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCC
Confidence 3333333333 44444444443332 2 35555542 1 2334556
Q ss_pred ceEEEEEcCCCc-EEEEeCC---CeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeeccc---EEEEEeCCCcc
Q 001245 421 RTEALTTSIDGM-IWTGGAN---GLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG---IVQVLDLEGNL 490 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~D---gtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DG---tIrlWD~~G~l 490 (1115)
.+.+++++|||. |++++.+ .+|.+||+ +|++ ..+..|. .+.+++ |||++|++++.++ .|++||++|+.
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 788899999998 6666654 58999999 5655 5666664 777777 7999999999877 89999999988
Q ss_pred ccccccccCCEEEEEecCC
Q 001245 491 LGGWVAHSSPVIKMAVGAG 509 (1115)
Q Consensus 491 l~~l~gH~~~V~sva~dg~ 509 (1115)
+..+.+|.+.|.++++.+.
T Consensus 390 ~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 390 KARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp EEECCCSSSEEEEEEECCC
T ss_pred EEEeeCCCCCCcCCccccc
Confidence 9999999999999998664
No 134
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=188.51 Aligned_cols=128 Identities=16% Similarity=0.278 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhccCCCceeeccCcEEecc-----ceeEEEEEEecCceeeeEEEEeecCCcccccCC
Q 001245 905 ESVRRQEFGDIMTSNEKVKIILEDLCRIPETIVSTNNIIIQN-----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDG 979 (1115)
Q Consensus 905 ~~~~~~~~~ei~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~-----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~ 979 (1115)
+++++++|+||++.+||+ ||+..|.+.++.+.|+|++ ..++.|+|+|+|++ +|.|+|+.+. +
T Consensus 2 ~~~~~~~~~ev~r~ld~~-----ENe~~P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~v-pa~F~f~~~~------~- 68 (140)
T 3qbt_B 2 ERRYRKVFEDSVRIMDRM-----ENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV-PCHFSFIPKL------N- 68 (140)
T ss_dssp ---------CCCCHHHHH-----HHHTSCCEEESCCEEEEEEECBTCCEEEEEEEEECSSS-CEEEEEECCT------T-
T ss_pred chHHHHHHHHHHHHHHHH-----hhccCCceEeeeeeEEeeeceeeeeeeeEEEEEcCCcc-ceEEEEecCC------C-
Confidence 578999999999999998 6788899999999999885 35789999999998 9999999531 1
Q ss_pred CCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEEEEE-eeccchHhHhcCCCCCCcccCcCcceeEEEEEEEecccccc
Q 001245 980 QASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHH-EDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRYSTET 1058 (1115)
Q Consensus 980 ~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Lvl~v~~~~~~~~ 1058 (1115)
++..||+||+|+|..|+|+||++++|+|++ .+..+++.+|+| ...++++|||||+||
T Consensus 69 --------~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g---------~~~l~diLvL~Ve~G----- 126 (140)
T 3qbt_B 69 --------DSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSG---------EDKIEDILVLHLDRG----- 126 (140)
T ss_dssp --------CSSSSCTTEEEESCEEEECTTCEEEEEEEECBCHHHHHHHHHS---------SSCSCEEEEEEETTS-----
T ss_pred --------chhhhhHhhhcCCcccccCCCCeeEEEEEEEEccCcccccccc---------hhhhheeEEEEeecC-----
Confidence 123589999999999999999999999994 444778899998 778899999999999
Q ss_pred eeeEEEeee
Q 001245 1059 RNHRIRVRH 1067 (1115)
Q Consensus 1059 ~~h~i~v~~ 1067 (1115)
|||||+|+.
T Consensus 127 ~d~fI~v~g 135 (140)
T 3qbt_B 127 KDYFLTISG 135 (140)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEec
Confidence 999999985
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=2.6e-18 Score=224.13 Aligned_cols=358 Identities=8% Similarity=-0.058 Sum_probs=232.3
Q ss_pred eeEEEEEeCCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC-
Q 001245 134 FLRTIVCTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD- 212 (1115)
Q Consensus 134 ~l~~l~~~~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D- 212 (1115)
.++..+.+..++....++.|.+||++++.... + ..| ...|.+++|||||+.||+++.+
T Consensus 16 ~~~~~~~S~~~iaf~~~~~l~~~~~~gg~~~~------------------l--t~~-~~~v~~~~~SPDG~~la~~s~~~ 74 (1045)
T 1k32_A 16 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRK------------------I--VSN-LGVINNARFFPDGRKIAIRVMRG 74 (1045)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCEEE------------------E--ECS-SSEEEEEEECTTSSEEEEEEEES
T ss_pred eEeCcEEeCCEEEEEECCcEEEEECCCCcEEE------------------e--eeC-CCcccCeEECCCCCEEEEEEeec
Confidence 44455555555544556899999998765432 1 234 6789999999999999998764
Q ss_pred -----CeEEEEECCCCCCCCCCCCcceEEeecCCCCE-------EEEEEeCCCc-EEEEeCC------CcEEEEeCCCcc
Q 001245 213 -----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV-------LSLCISSYGD-LWSGSEG------GGIKIWPWEAIE 273 (1115)
Q Consensus 213 -----gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V-------~sVafSpdG~-L~SgS~D------gtIrvWdl~t~~ 273 (1115)
..|++|+++++ ....+.+|.+.| .+++|||||+ +++++.| ..|.+|++++++
T Consensus 75 ~~~~~~~i~~~d~~~g---------~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~ 145 (1045)
T 1k32_A 75 SSLNTADLYFYNGENG---------EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN 145 (1045)
T ss_dssp TTCCEEEEEEEETTTT---------EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred cCCCCCeEEEEECCCC---------CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCC
Confidence 38999999862 356788999888 9999999999 4677755 357777877755
Q ss_pred eeeccCCCcceeEEEEeeeeeeee---------c-cc--ceeccee-----------eeecCCeEEEEEeCCCCEEEeec
Q 001245 274 KALSLKPEERHTAALIVERSYIDL---------R-SH--LSVNGFS-----------SILTSDIKNLLSDHSRAKVWSAG 330 (1115)
Q Consensus 274 ~~l~~~~~~~~~~a~~~~~~~~~l---------~-~h--~~~~~~~-----------~~~s~~v~~las~~~~~~v~S~s 330 (1115)
.. .+........++.. . .+-. . .+ .....++ ......+.+++++++ ..+++++
T Consensus 146 ~~-~l~~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~ 221 (1045)
T 1k32_A 146 FV-PLNLGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITD 221 (1045)
T ss_dssp EE-ECCSCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEEC
T ss_pred eE-EecCCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEe
Confidence 32 12111111111110 0 0000 0 00 0000000 112245566666665 4444443
Q ss_pred -CCeEEEEEcCC-ccEEEEEecCCceeeEEeccCCCCcc-ccccceEEEEecCC-------C------------Ccccee
Q 001245 331 -FLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFA-MEDEFKTKIVTSSK-------K------------DKAQSS 388 (1115)
Q Consensus 331 -d~tI~lWD~~t-g~ll~tl~~~~~~~~~v~~s~~~~~~-~~~~~~~~~~~~~~-------~------------~~~~~~ 388 (1115)
+++++||.+.. +..++.+..+... ....+++++... ...+..+++|.... . ......
T Consensus 222 ~dg~~~l~~~~~~g~~~~~l~~~~~~-~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~ 300 (1045)
T 1k32_A 222 IDGFGQIYSTDLDGKDLRKHTSFTDY-YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFA 300 (1045)
T ss_dssp TTSSCEEEEEETTSCSCEECCCCCSS-CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGE
T ss_pred ccCceEEEEEeCCCCcceEecCCCCc-ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccce
Confidence 57889997653 3334445444332 234555544321 11222344443210 0 012457
Q ss_pred eeee-ccccceEEeccCcEEEEeccc----ccccCCC-ceEEEEEcCCCc-EEEEeCCCeEE-EEcCCCCeeEEeecCCC
Q 001245 389 FGFF-QRSRNAIMGAADAVRRVAAKG----GFGDDNR-RTEALTTSIDGM-IWTGGANGLLL-QWDPNGNRLQDFQYLPF 460 (1115)
Q Consensus 389 v~f~-~~~~~~~~Gs~d~v~~~~~~g----~l~~h~~-~V~aVa~S~Dg~-laSGS~DgtIk-lWD~tG~~l~tl~gH~~ 460 (1115)
+.|+ ++++.++.++.+.+..|...+ .+..+.. .+..++++ ||. +++++.++.|. +||+.+.....+.+|..
T Consensus 301 ~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~ 379 (1045)
T 1k32_A 301 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG 379 (1045)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCC
T ss_pred eeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcc
Confidence 7899 999888888777787776532 2345556 78889999 987 78888888898 99995554555668888
Q ss_pred cEEEEE--ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCC----------ceEEeee
Q 001245 461 AVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHG----------GIRGWNV 525 (1115)
Q Consensus 461 ~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~Dg----------tIRlWdl 525 (1115)
.+.+++ |||++||+++.+++|++||++ |++...+.+|.+.|.++++ ||++|++++.++ +|++||+
T Consensus 380 ~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 380 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 898888 799999999999999999997 6776667799999888874 899998887654 9999998
Q ss_pred cC
Q 001245 526 TS 527 (1115)
Q Consensus 526 ~~ 527 (1115)
.+
T Consensus 460 ~~ 461 (1045)
T 1k32_A 460 EG 461 (1045)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 136
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.82 E-value=3e-20 Score=214.17 Aligned_cols=156 Identities=17% Similarity=0.289 Sum_probs=107.4
Q ss_pred eccCHHHHHHHHHHHhhcchhhhhhhhhccCCCceeeccCcEEecc-----ceeEEEEEEecCceeeeEEEEeecCCccc
Q 001245 901 ARVDESVRRQEFGDIMTSNEKVKIILEDLCRIPETIVSTNNIIIQN-----QDTSILRVTNKCGKKDAFYQINCEGQSTV 975 (1115)
Q Consensus 901 ~~v~~~~~~~~~~ei~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~-----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~ 975 (1115)
++||+++|+++++|+++.+||+ ||+.+|.+.|+.+.|+|++ ..++.|+|+|+|++ +|+|+|+.+
T Consensus 1 ~~i~~~~~~~~~~ev~~~~d~~-----en~~~P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~-pa~f~f~~~----- 69 (366)
T 3qis_A 1 KVVDERRYRKVFEDSVRIMDRM-----ENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNGQV-PCHFSFIPK----- 69 (366)
T ss_dssp --------------------------------CCEEESCSEEEEEEECBTCCEEEEEEEEECSSS-CEEEEEECC-----
T ss_pred CccCHHHHHHHHHHHHHHHhHH-----HhccCCeEEEecCeEEeeeeeeCCeEEEEEEEEecCCc-eEEEEEEeC-----
Confidence 4789999999999999999998 6778899999999998875 45789999999998 999999963
Q ss_pred ccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEEEEE-eeccchHhHhcCCCCCCcccCcCcceeEEEEEEEecc
Q 001245 976 KDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSVHH-EDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRY 1054 (1115)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Lvl~v~~~~ 1054 (1115)
.+ ++..||+||+|+|..|+|.||++++|+|++ .+..+++.+|+| ...+++||||+|++|
T Consensus 70 -~~---------~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g---------~~~l~diLvL~ve~G- 129 (366)
T 3qis_A 70 -LN---------DSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSG---------EDKIEDILVLHLDRG- 129 (366)
T ss_dssp -TT---------CSSSSCTTEEEESCEEEECTTCEEEEEEEECBCTTTHHHHHHT---------SSCSCEEEEEEETTS-
T ss_pred -CC---------CCCCCCCcEEEeCCccEECCCCEEEEEEEEEECHHHHHHHhcC---------ccccceEEEEEEeCC-
Confidence 11 233589999999999999999999999994 556889999999 677899999999999
Q ss_pred cccceeeEEEee-----eecCCCcccccCCCCCcCccCCCcc
Q 001245 1055 STETRNHRIRVR-----HCFSAKTKREDHKPNESAQIPGNVL 1091 (1115)
Q Consensus 1055 ~~~~~~h~i~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 1091 (1115)
++|||+|+ +|||.+...+-..+.+.|..+.+.+
T Consensus 130 ----~d~FI~v~~~~~~s~FG~sl~~l~~~~~pir~~~~~~l 167 (366)
T 3qis_A 130 ----KDYFLTISGNYLPSCFGTSLEALCRMKRPIREVPVTKL 167 (366)
T ss_dssp ----CEEEEEEEEEECCCSTTSCHHHHHHCCSCTTC------
T ss_pred ----CcEEEEeccccCCccccCcHHHHHHhccchhhcChhhh
Confidence 99999998 6999999887777777777665544
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.82 E-value=6.4e-19 Score=214.15 Aligned_cols=272 Identities=9% Similarity=-0.024 Sum_probs=189.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee-cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeC--CCcc
Q 001245 198 VGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPW--EAIE 273 (1115)
Q Consensus 198 a~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~-GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl--~t~~ 273 (1115)
+++|++.++++++.|++|++||..++ +.+.++. ||. +.+++|+|||+ |++++.|++|++||+ .+++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK--------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC--------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc--------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 47899999999999999999999874 3456776 454 89999999998 789999999999999 6654
Q ss_pred eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC----CCCEEEeec--CCeEEEEEcCCccEEEE
Q 001245 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH----SRAKVWSAG--FLSFALWDARTRELLKV 347 (1115)
Q Consensus 274 ~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~----~~~~v~S~s--d~tI~lWD~~tg~ll~t 347 (1115)
...+ +. +. .....+++++ ++..++++. +++|.|||..+++++++
T Consensus 214 ~~~~-------------------i~-~g----------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~ 263 (543)
T 1nir_A 214 KVAE-------------------IK-IG----------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 263 (543)
T ss_dssp EEEE-------------------EE-CC----------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred EEEE-------------------Ee-cC----------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence 3311 11 01 2356788888 888888775 68999999999999998
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccc-eEEec-cCcEEEEeccc-c-----cccCC
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN-AIMGA-ADAVRRVAAKG-G-----FGDDN 419 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~-~~~Gs-~d~v~~~~~~g-~-----l~~h~ 419 (1115)
+...+.......+++. .....+.+++++.. +++.. .+.+..|+... . ...+.
T Consensus 264 i~~~g~~~~~~~~~~~--------------------~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~ 323 (543)
T 1nir_A 264 VSTRGMTVDTQTYHPE--------------------PRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 323 (543)
T ss_dssp EECCEECSSSCCEESC--------------------CCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred ecccCcccCccccccC--------------------CceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence 8643211000000000 00112233333222 22222 23455554321 0 11233
Q ss_pred CceEEEEEcCCCc-EE-EEeCCCeEEEEcC-CCCeeEEeec----CCCcEEEEE-ec-CCEEEeee-cccEEEEEeCC--
Q 001245 420 RRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCLC-TF-GSQIWVGY-MNGIVQVLDLE-- 487 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-la-SGS~DgtIklWD~-tG~~l~tl~g----H~~~V~sla-~d-G~~LaSGs-~DGtIrlWD~~-- 487 (1115)
..+..++|+|||+ ++ ++..|++|++||. +|+++.++.. |.+....+. ++ |..++++. .|++|.|||++
T Consensus 324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCC
Confidence 4566789999998 54 4556899999999 8999998875 765554454 66 55666665 68999999974
Q ss_pred ------CccccccccccCCEEEEE--ecCCEEEeec-------CCCceEEeeecCCC
Q 001245 488 ------GNLLGGWVAHSSPVIKMA--VGAGYIFTLA-------NHGGIRGWNVTSPG 529 (1115)
Q Consensus 488 ------G~ll~~l~gH~~~V~sva--~dg~~laSgS-------~DgtIRlWdl~~p~ 529 (1115)
+++++++.+|.+.+..|+ ++|++|++++ .+++|++||+.+..
T Consensus 404 ~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 404 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 578999999998888887 5899999987 37899999998754
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.77 E-value=2.2e-17 Score=206.15 Aligned_cols=293 Identities=9% Similarity=-0.036 Sum_probs=185.8
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCCCCCCCCCCcceEEeecCCC----------------------
Q 001245 191 VSSVMCMVGDEASGVVWSGHR-DG-----RIMCWKMNARLLDSDDGFGEVLSWQAHRG---------------------- 242 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~-Dg-----tIrlWdl~~~~~~~~~~~~~~~~l~GH~~---------------------- 242 (1115)
...|.+++|||||+.||+++. |+ +|++||++++. ....+.+|..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--------TRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--------EEEEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--------eeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 346889999999999999998 98 99999998742 2333444432
Q ss_pred --CEEEEEEeCCCc-EEEEeCCCcEEEEeCCCc---ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEE
Q 001245 243 --PVLSLCISSYGD-LWSGSEGGGIKIWPWEAI---EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKN 316 (1115)
Q Consensus 243 --~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~---~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~ 316 (1115)
.|.+++|||||+ |++++. ++|++||+.++ ... . +..+. ..+..
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~-------------------l~~~~----------~~~~~ 156 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-Q-------------------LTHGE----------GFATD 156 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-B-------------------CCCSS----------SCEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-E-------------------cccCC----------ccccc
Confidence 388999999998 677775 99999999876 321 1 11121 45677
Q ss_pred EEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCc-e---------------eeEEeccCCCCcccc---ccceEEEE
Q 001245 317 LLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQ-I---------------ENRVDMSLLPDFAME---DEFKTKIV 377 (1115)
Q Consensus 317 las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~-~---------------~~~v~~s~~~~~~~~---~~~~~~~~ 377 (1115)
+++++++..|+.+++..|.+||+.+|+..+....+.. + ...+.++|++....- +...+..+
T Consensus 157 ~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~ 236 (741)
T 2ecf_A 157 AKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQ 236 (741)
T ss_dssp EEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEE
T ss_pred ccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceE
Confidence 8899999999988888999999999987765543322 1 123344443322110 00000000
Q ss_pred ec---CCCCccceeeeeeccccceEEeccCcEEEEeccc--cc---c---cCCCceEEEEEcCCCc-EEEEeC-----CC
Q 001245 378 TS---SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG--GF---G---DDNRRTEALTTSIDGM-IWTGGA-----NG 440 (1115)
Q Consensus 378 ~~---~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g--~l---~---~h~~~V~aVa~S~Dg~-laSGS~-----Dg 440 (1115)
.. .........+.+...+.. .....+..|+..+ .. . .+...+..+++ |||+ |++++. +.
T Consensus 237 ~~~~~~p~~~~~~~~~~~~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~ 312 (741)
T 2ecf_A 237 KRYEVYADRTDVIEQRYPAAGDA---NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKL 312 (741)
T ss_dssp EEEEECSSCEEEEEEECCBTTSC---CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEE
T ss_pred ecCCCCCCcccceEeecCCCCCC---CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeE
Confidence 00 000000000000000000 0000344444322 11 1 35567888999 9998 665543 57
Q ss_pred eEEEEcC-CCCeeEEeecCCC----cEEEEE--ecCCEEEeeecccEEEEEeC--CCccccccccccCCEEEEE---ecC
Q 001245 441 LLLQWDP-NGNRLQDFQYLPF----AVQCLC--TFGSQIWVGYMNGIVQVLDL--EGNLLGGWVAHSSPVIKMA---VGA 508 (1115)
Q Consensus 441 tIklWD~-tG~~l~tl~gH~~----~V~sla--~dG~~LaSGs~DGtIrlWD~--~G~ll~~l~gH~~~V~sva---~dg 508 (1115)
.|.+||+ +|++...+..|.. .+.+++ +||+++++++.||+++||.+ +|+ ...+.+|...|.++. .||
T Consensus 313 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg 391 (741)
T 2ecf_A 313 DLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKA 391 (741)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTT
T ss_pred EEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCC
Confidence 8999999 7888887776653 233444 79999999999997777764 577 888999988888753 478
Q ss_pred CEEE-eecCCC--ceEEeeecC
Q 001245 509 GYIF-TLANHG--GIRGWNVTS 527 (1115)
Q Consensus 509 ~~la-SgS~Dg--tIRlWdl~~ 527 (1115)
+.|+ +++.|+ +++||++..
T Consensus 392 ~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 392 GLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TEEEEEECSSCTTCBEEEEEET
T ss_pred CEEEEEEeCCCCceEEEEEEEc
Confidence 7765 566666 999999875
No 139
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=2.8e-17 Score=192.54 Aligned_cols=264 Identities=9% Similarity=-0.037 Sum_probs=180.9
Q ss_pred eEEEEEcCCC-CEEEEEe----CCC----eEEEEEC--CCCCCCCCCCCcceEEeecCCCCEEEEEEeC-----------
Q 001245 194 VMCMVGDEAS-GVVWSGH----RDG----RIMCWKM--NARLLDSDDGFGEVLSWQAHRGPVLSLCISS----------- 251 (1115)
Q Consensus 194 V~~la~s~dg-~~LaSGS----~Dg----tIrlWdl--~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp----------- 251 (1115)
+...++++.| ..+++|+ .|| +||+||+ .++++ ....++.+|...|..+++++
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTV------LAQNSYKVNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCE------EEEEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCE------EeeeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence 3444555554 4666886 568 9999999 76321 11246899999999888875
Q ss_pred ----CCcEEEEeCC------CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC
Q 001245 252 ----YGDLWSGSEG------GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH 321 (1115)
Q Consensus 252 ----dG~L~SgS~D------gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~ 321 (1115)
+++++.++.+ ++|++||+++.... .+.+|. ..+.++++++
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~--------------------~l~~~~----------~~v~~~~~Sp 188 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF--------------------VVHRSP----------QPLMSPAWSP 188 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE--------------------EEEEES----------SCEEEEEECT
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE--------------------EEeCCC----------CcceeeEEcC
Confidence 4457665554 79999999753211 112232 5677889999
Q ss_pred CCCEEEeecC----CeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccc
Q 001245 322 SRAKVWSAGF----LSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (1115)
Q Consensus 322 ~~~~v~S~sd----~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~ 397 (1115)
++..|+.++. .+|++||+.+|++.... .+...+..+ .|+++++.
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~~~~~~-------------------------------~~spdg~~ 236 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAP-------------------------------AFSPDGSK 236 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSSCEEEE-------------------------------EECTTSSE
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCCcccCE-------------------------------EEcCCCCE
Confidence 9998887763 38999999999876433 232233333 44444443
Q ss_pred eE-EeccC---cEEEEecc----cccccCCCceEEEEEcCCCc-EEEEeC-CC--eEEEEcCCCCeeEEeecCCCcEEEE
Q 001245 398 AI-MGAAD---AVRRVAAK----GGFGDDNRRTEALTTSIDGM-IWTGGA-NG--LLLQWDPNGNRLQDFQYLPFAVQCL 465 (1115)
Q Consensus 398 ~~-~Gs~d---~v~~~~~~----g~l~~h~~~V~aVa~S~Dg~-laSGS~-Dg--tIklWD~tG~~l~tl~gH~~~V~sl 465 (1115)
++ +++.+ .+.+|+.. ..+..|...+.+++++|||. |++++. ++ .|.+||+.+..+..+..|...+.++
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~ 316 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 316 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEE
T ss_pred EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCe
Confidence 33 33322 25566542 23456677889999999998 777776 45 6777798544456667777788887
Q ss_pred E--ecCCEEEeeecc---cEEEEEeCCCccccccccccCCEEEEEe--cCCEEEeecCCC---ceEEeeec
Q 001245 466 C--TFGSQIWVGYMN---GIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHG---GIRGWNVT 526 (1115)
Q Consensus 466 a--~dG~~LaSGs~D---GtIrlWD~~G~ll~~l~gH~~~V~sva~--dg~~laSgS~Dg---tIRlWdl~ 526 (1115)
+ |||++|++++.+ ++|++||+++..+..+..|. .+.++++ ||++|++++.|+ .|++||+.
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 7 799999998864 69999999844345677775 7888774 899999988877 79999975
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.76 E-value=1.3e-16 Score=207.94 Aligned_cols=339 Identities=12% Similarity=-0.032 Sum_probs=226.1
Q ss_pred eeEEEEEe-CCeEEE--eC------CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCce-------EEE
Q 001245 134 FLRTIVCT-EEQLWA--GG------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSV-------MCM 197 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~------D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V-------~~l 197 (1115)
.+..++.+ +++.+| +. +..|.+||++++...+. ..| ...+ .++
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~l--------------------t~~-~~~~~~~~~~~~~~ 112 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI--------------------TYF-SGKSTGRRMFTDVA 112 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC--------------------CCC-CEEEETTEECSEEE
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEc--------------------ccC-CCcccccccccccc
Confidence 44455555 555444 22 23899999988763321 122 3344 899
Q ss_pred EEcCCCCEEEEEeCC------CeEEEEECCCCCCC--CCCC---------------------------------------
Q 001245 198 VGDEASGVVWSGHRD------GRIMCWKMNARLLD--SDDG--------------------------------------- 230 (1115)
Q Consensus 198 a~s~dg~~LaSGS~D------gtIrlWdl~~~~~~--~~~~--------------------------------------- 230 (1115)
+|+|||+++++++.| ..|.+|++.++... ....
T Consensus 113 ~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~ 192 (1045)
T 1k32_A 113 GFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVN 192 (1045)
T ss_dssp EECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEE
T ss_pred cCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECC
Confidence 999999999999866 45777887654311 0000
Q ss_pred CcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC-cceeeccCCCcceeEEEEeeeeeeeecccceecceee
Q 001245 231 FGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSS 308 (1115)
Q Consensus 231 ~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~ 308 (1115)
......+.+|.+.|.+++|+++ . +++++.|++++||.++. +.... .+..|.
T Consensus 193 ~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~-------------------~l~~~~------- 245 (1045)
T 1k32_A 193 SGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR-------------------KHTSFT------- 245 (1045)
T ss_dssp TTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE-------------------ECCCCC-------
T ss_pred CCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce-------------------EecCCC-------
Confidence 0122345789999999999998 5 46788899999998653 11110 011111
Q ss_pred eecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCC-----------ceeeEEecc-CCCCcc-ccccceEE
Q 001245 309 ILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDG-----------QIENRVDMS-LLPDFA-MEDEFKTK 375 (1115)
Q Consensus 309 ~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~-----------~~~~~v~~s-~~~~~~-~~~~~~~~ 375 (1115)
.+...++++++..|+.+.++.|.+||+.++++. .+..+. ..+..+.++ |++... ......+.
T Consensus 246 ----~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~ 320 (1045)
T 1k32_A 246 ----DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAF 320 (1045)
T ss_dssp ----SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEE
T ss_pred ----CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEE
Confidence 122346677778777777899999999655544 554422 124567777 765422 11122334
Q ss_pred EEecCCC--------Cc-cceeeeeeccccceEEeccC-cEE-EEeccc----ccccCCCceEEEEEcCCCc-EEEEeCC
Q 001245 376 IVTSSKK--------DK-AQSSFGFFQRSRNAIMGAAD-AVR-RVAAKG----GFGDDNRRTEALTTSIDGM-IWTGGAN 439 (1115)
Q Consensus 376 ~~~~~~~--------~~-~~~~v~f~~~~~~~~~Gs~d-~v~-~~~~~g----~l~~h~~~V~aVa~S~Dg~-laSGS~D 439 (1115)
++..... .. ....+.|+ +++.++.++.+ .+. +|+..+ .+.++...+..+++||||+ |++++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 321 IQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp EECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred EEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCC
Confidence 4432111 11 22356677 76666665543 344 444432 2445667889999999998 7899999
Q ss_pred CeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecc----------cEEEEEeCCCccccccccccCCEEEEEe
Q 001245 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMN----------GIVQVLDLEGNLLGGWVAHSSPVIKMAV 506 (1115)
Q Consensus 440 gtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~D----------GtIrlWD~~G~ll~~l~gH~~~V~sva~ 506 (1115)
++|++||+ +|++...+.+|...|.+++ |||++|++++.+ ++|++||+++..+..+.+|...+.++++
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~ 479 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 479 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceE
Confidence 99999999 7888888878998888887 799999988765 4999999984447888899988888875
Q ss_pred --cCCEEEeecCCCceEEeeec
Q 001245 507 --GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 507 --dg~~laSgS~DgtIRlWdl~ 526 (1115)
||++|++++.++..++|+..
T Consensus 480 spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 480 DADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CTTSCEEEEEESCCCCCEECSS
T ss_pred cCCCCEEEEEecccCCcCcchh
Confidence 89999999999999999865
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=1.2e-16 Score=172.97 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=172.1
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNA-RLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~-~~~~ 226 (1115)
+.|++|++||+.++..... . .| ...|.+++|+|+|++|++++ |+.|++||+++ +.
T Consensus 19 ~~~~~i~~~d~~~~~~~~~------------------~--~~-~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-- 74 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVV------------------W--QT-PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-- 74 (297)
T ss_dssp CCCEEEEEEETTTTEEEEE------------------E--EE-SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS--
T ss_pred CcceeEEEEeCCCCceeee------------------c--cC-CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC--
Confidence 4688999999988764431 1 24 56899999999999999987 88999999986 43
Q ss_pred CCCCCcceEEeecC-CCCEEEEEEeCCCc-EEEEe--CCCcEEEEeCCC--cceeeccCCCcceeEEEEeeeeeeeeccc
Q 001245 227 SDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSH 300 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH-~~~V~sVafSpdG~-L~SgS--~DgtIrvWdl~t--~~~~l~~~~~~~~~~a~~~~~~~~~l~~h 300 (1115)
......+| ...|.+++|+|+|+ |++++ .|+.++||.++. +... . +..+
T Consensus 75 ------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~-------------------~~~~ 128 (297)
T 2ojh_A 75 ------PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-L-------------------MTKN 128 (297)
T ss_dssp ------CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-E-------------------CCSS
T ss_pred ------ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-E-------------------eecC
Confidence 23344566 47899999999998 67777 456777776643 2211 0 1001
Q ss_pred ceecceeeeecCCeEEEEEeCCCCEEE-ee-cCCeEEEEEcC--CccEEEEEecCCceeeEEeccCCCCccccccceEEE
Q 001245 301 LSVNGFSSILTSDIKNLLSDHSRAKVW-SA-GFLSFALWDAR--TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1115)
Q Consensus 301 ~~~~~~~~~~s~~v~~las~~~~~~v~-S~-sd~tI~lWD~~--tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~ 376 (1115)
..+..+++++++..++ ++ .++.++||++. +++.. .
T Consensus 129 -----------~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~----------------------------- 167 (297)
T 2ojh_A 129 -----------LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-R----------------------------- 167 (297)
T ss_dssp -----------SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-E-----------------------------
T ss_pred -----------CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-E-----------------------------
Confidence 2245667788887766 44 36778888853 22211 0
Q ss_pred EecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEe-CCCeEEEEcC--CCCee
Q 001245 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP--NGNRL 452 (1115)
Q Consensus 377 ~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS-~DgtIklWD~--tG~~l 452 (1115)
+..+...+.+++++|||. ++.++ .|+.+++|++ ++..+
T Consensus 168 --------------------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 168 --------------------------------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV 209 (297)
T ss_dssp --------------------------------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE
T ss_pred --------------------------------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc
Confidence 112233567788999997 65554 5999999987 57788
Q ss_pred EEeecCCCcEEEEE--ecCCEEEeeecc-----------cEEEEEeCC-Ccc--ccccccccCCEEEEEe--cCCEEEee
Q 001245 453 QDFQYLPFAVQCLC--TFGSQIWVGYMN-----------GIVQVLDLE-GNL--LGGWVAHSSPVIKMAV--GAGYIFTL 514 (1115)
Q Consensus 453 ~tl~gH~~~V~sla--~dG~~LaSGs~D-----------GtIrlWD~~-G~l--l~~l~gH~~~V~sva~--dg~~laSg 514 (1115)
..+..|...+.+++ ++|++|++++.+ +.|.+||++ ++. +..+.+|...|.++++ +|++|+++
T Consensus 210 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 289 (297)
T 2ojh_A 210 ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYV 289 (297)
T ss_dssp EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEE
T ss_pred EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEE
Confidence 88988888888887 789999988876 679999997 443 4455588888888774 78999888
Q ss_pred cCCC
Q 001245 515 ANHG 518 (1115)
Q Consensus 515 S~Dg 518 (1115)
+.|.
T Consensus 290 ~~~~ 293 (297)
T 2ojh_A 290 RYFP 293 (297)
T ss_dssp EECC
T ss_pred Eecc
Confidence 7664
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.73 E-value=3.3e-16 Score=174.36 Aligned_cols=263 Identities=12% Similarity=0.146 Sum_probs=167.2
Q ss_pred eCCCCEEEEeCCC-CcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC-CeEEEEECC--CC
Q 001245 148 GGENGLRVWNLKE-LYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD-GRIMCWKMN--AR 223 (1115)
Q Consensus 148 g~D~tvrvWdl~t-g~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D-gtIrlWdl~--~~ 223 (1115)
+.|++|++||+.. +.... .....+ ...+.+++|+|+|+.|++++.+ ++|++|+++ ++
T Consensus 12 ~~~~~v~~~~~~~~~~~~~------------------~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~ 72 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTL------------------TQVVDV-PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG 72 (343)
T ss_dssp GGGTEEEEEEECTTSCEEE------------------EEEEEC-SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCCeEEEEEECCCCcEEE------------------eeeEec-CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC
Confidence 4689999999863 22111 111123 4567889999999999999887 999999997 32
Q ss_pred CCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccc
Q 001245 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (1115)
Q Consensus 224 ~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~ 301 (1115)
. ......+..+. .+.+++|+|+|+ |+.++ .|++|++||+..+... . . ...+..+
T Consensus 73 ~------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~-------~--------~~~~~~~- 128 (343)
T 1ri6_A 73 A------LTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-G-------V--------VDVVEGL- 128 (343)
T ss_dssp C------EEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-E-------E--------EEEECCC-
T ss_pred c------eeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-c-------c--------cccccCC-
Confidence 1 12233444444 789999999998 65554 5899999998422110 0 0 0001111
Q ss_pred eecceeeeecCCeEEEEEeCCCCEEEee--cCCeEEEEEcCC-ccEEEEEecCCceeeEEeccCCCCccccccceEEEEe
Q 001245 302 SVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1115)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~S~--sd~tI~lWD~~t-g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~ 378 (1115)
..+..+++++++..++.+ .++.|.+||+.+ +++...... . ..
T Consensus 129 ----------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~----------------------~~ 173 (343)
T 1ri6_A 129 ----------DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA---E----------------------VT 173 (343)
T ss_dssp ----------TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---E----------------------EE
T ss_pred ----------CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc---c----------------------cc
Confidence 234456778888776655 468899999876 554321100 0 00
Q ss_pred cCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EE-EEeCCCeEEEEcCC---CCe--
Q 001245 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDPN---GNR-- 451 (1115)
Q Consensus 379 ~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-la-SGS~DgtIklWD~t---G~~-- 451 (1115)
......+..++++|||. ++ ++..+++|++||++ |+.
T Consensus 174 -------------------------------------~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 174 -------------------------------------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp -------------------------------------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred -------------------------------------cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 00012355688999997 54 45579999999982 433
Q ss_pred eEEee----cC--CCcEEEEE--ecCCEEEe-eecccEEEEEeCC--C---ccccccccccCCEEEEEe--cCCEEEeec
Q 001245 452 LQDFQ----YL--PFAVQCLC--TFGSQIWV-GYMNGIVQVLDLE--G---NLLGGWVAHSSPVIKMAV--GAGYIFTLA 515 (1115)
Q Consensus 452 l~tl~----gH--~~~V~sla--~dG~~LaS-Gs~DGtIrlWD~~--G---~ll~~l~gH~~~V~sva~--dg~~laSgS 515 (1115)
++.+. +| ...+.+++ ++|++|++ +..++.|++||++ + +.+..+..+.. +.++++ +|++|+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEEC
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEec
Confidence 33332 11 23455666 78988874 4579999999986 2 34445555544 666765 788888776
Q ss_pred -CCCceEEeeec
Q 001245 516 -NHGGIRGWNVT 526 (1115)
Q Consensus 516 -~DgtIRlWdl~ 526 (1115)
.|++|++|++.
T Consensus 296 ~~~~~v~v~~~d 307 (343)
T 1ri6_A 296 QKSHHISVYEIV 307 (343)
T ss_dssp TTTCEEEEEEEE
T ss_pred CCCCeEEEEEEc
Confidence 68999999875
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.73 E-value=6.8e-16 Score=172.27 Aligned_cols=258 Identities=11% Similarity=0.037 Sum_probs=166.0
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCCcEEEEeCCCcce-
Q 001245 199 GDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWEAIEK- 274 (1115)
Q Consensus 199 ~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~DgtIrvWdl~t~~~- 274 (1115)
|+++ +.++++++.|++|++||++++ +....+..+...+ +++|+|+|+ |+.++ .+++|.+||+++++.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTL--------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTC--------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred EcCCCCEEEEEecCCCeEEEEeCccc--------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 4444 555889999999999999874 2344555666667 999999998 66554 489999999987653
Q ss_pred eeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCC----eEEEEEcCCccEEEEEec
Q 001245 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL----SFALWDARTRELLKVFNI 350 (1115)
Q Consensus 275 ~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~----tI~lWD~~tg~ll~tl~~ 350 (1115)
... +..+. ....++++++++..++++... .|.+||+.+++.++.+..
T Consensus 76 ~~~-------------------~~~~~----------~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 126 (331)
T 3u4y_A 76 VVA-------------------IQEGQ----------SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI 126 (331)
T ss_dssp EEE-------------------EEECS----------SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC
T ss_pred EEe-------------------cccCC----------CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC
Confidence 110 00011 122226778888888755444 899999999999888765
Q ss_pred CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEe-c-cCc-EEEEecc---------cccccC
Q 001245 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMG-A-ADA-VRRVAAK---------GGFGDD 418 (1115)
Q Consensus 351 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~G-s-~d~-v~~~~~~---------g~l~~h 418 (1115)
+... ..+.++++.. .+++. . .+. +..|... ......
T Consensus 127 ~~~~-~~~~~spdg~-------------------------------~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 174 (331)
T 3u4y_A 127 PYDA-VGIAISPNGN-------------------------------GLILIDRSSANTVRRFKIDADGVLFDTGQEFISG 174 (331)
T ss_dssp CTTE-EEEEECTTSS-------------------------------CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred CCCc-cceEECCCCC-------------------------------EEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence 4433 4445555432 11111 1 122 3322211 011122
Q ss_pred CCceEEEEEcCCCc-EE-EEeCCCeEEEEcC-CCCe---eEEeecCCCcEEEEE--ecCCEEEeee-cccEEEEEeCC-C
Q 001245 419 NRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNR---LQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-G 488 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-la-SGS~DgtIklWD~-tG~~---l~tl~gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~-G 488 (1115)
...+..++++|||. ++ ++..+++|.+||+ +|+. +.++..+ ..+.+++ +||++|++++ .++.|.+||++ |
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 34578899999997 54 5556899999999 7888 7777755 4455565 7899877665 58899999987 6
Q ss_pred cc--ccccccc----cCCE-----EEEEecCCEEE-eecCCCceEEeeecC
Q 001245 489 NL--LGGWVAH----SSPV-----IKMAVGAGYIF-TLANHGGIRGWNVTS 527 (1115)
Q Consensus 489 ~l--l~~l~gH----~~~V-----~sva~dg~~la-SgS~DgtIRlWdl~~ 527 (1115)
++ +..+..+ ...+ .++.+||++|+ +++.+++|++||+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 254 TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 55 3333222 2211 24446888876 455677999999875
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=8.1e-17 Score=200.15 Aligned_cols=316 Identities=8% Similarity=-0.062 Sum_probs=181.4
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc--CCceEEEEEcCCCCEEEEEeCC---------CeEE
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHRD---------GRIM 216 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G--~~~V~~la~s~dg~~LaSGS~D---------gtIr 216 (1115)
+.|++|++||++++..... .. .+. ...|.+++|||||++|++++.| ++|.
T Consensus 34 ~~dg~i~~~d~~~g~~~~~------------------~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTVL------------------IE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CSSSCEEEBCGGGCCCEEE------------------EC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred eCCCCEEEEECCCCcEEEE------------------ec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 5788999999998876542 11 120 1248899999999999999875 7888
Q ss_pred EEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeee
Q 001245 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYI 295 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~ 295 (1115)
+||++++.+ ..+....+|...|.+++|||||+ |++++. ++|++||+.+++............
T Consensus 95 ~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~---------- 157 (723)
T 1xfd_A 95 LSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV---------- 157 (723)
T ss_dssp EEESSSCCC------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT----------
T ss_pred EEECCCCce------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc----------
Confidence 999987431 11122245666799999999997 777775 799999998865431111000000
Q ss_pred eecccceeccee-eeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccc
Q 001245 296 DLRSHLSVNGFS-SILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEF 372 (1115)
Q Consensus 296 ~l~~h~~~~~~~-~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~ 372 (1115)
...++.. .+. ....+.+..+++++++..|+.++ +..+++|++..... .... ....+.+++.+.. ....
T Consensus 158 ~~~g~~~--~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~G~~--~~~~ 228 (723)
T 1xfd_A 158 IYNGLSD--WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG----SIYP-TVKPYHYPKAGSE--NPSI 228 (723)
T ss_dssp EEEEECC--HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----SSSC-CCEEEECCBTTSC--CCEE
T ss_pred eECcccc--eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC----cCCC-cceeccCCCCCCC--CCee
Confidence 0000000 000 00002346788899998888765 24577887542110 0001 1122333332111 0011
Q ss_pred eEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeC----CCeEEEEcC
Q 001245 373 KTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDP 447 (1115)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~----DgtIklWD~ 447 (1115)
.+.+|....... ...+.....+..+...+..+++||||+ +++.+. +..|++||+
T Consensus 229 ~l~~~d~~~~~~---------------------~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 229 SLHVIGLNGPTH---------------------DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp EEEEEESSSSCC---------------------CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred EEEEEECCCCce---------------------eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 222222111000 000000011222355688899999998 445432 368999999
Q ss_pred -CCCeeEEeecC-CCcEE----EEE--ecCCEEEee--eccc------EEEEEe-CCCcc---ccccccccCCEEE---E
Q 001245 448 -NGNRLQDFQYL-PFAVQ----CLC--TFGSQIWVG--YMNG------IVQVLD-LEGNL---LGGWVAHSSPVIK---M 504 (1115)
Q Consensus 448 -tG~~l~tl~gH-~~~V~----sla--~dG~~LaSG--s~DG------tIrlWD-~~G~l---l~~l~gH~~~V~s---v 504 (1115)
+|++...+..+ ...+. +++ |||++|+.. ..++ .|.+|| .++.. ...+..+...+.. .
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~ 367 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY 367 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence 78887776543 34432 444 799988754 4566 678888 45444 6667654444544 3
Q ss_pred EecCCEEEeecCC---CceEEeeecCCC
Q 001245 505 AVGAGYIFTLANH---GGIRGWNVTSPG 529 (1115)
Q Consensus 505 a~dg~~laSgS~D---gtIRlWdl~~p~ 529 (1115)
.+||++|+..+.+ +++++|++...+
T Consensus 368 spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 368 DEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp ETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred cCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 4589998765544 899999997543
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.72 E-value=4.6e-16 Score=172.70 Aligned_cols=278 Identities=9% Similarity=0.020 Sum_probs=165.5
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCC-ceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVS-SVMCMVGDEASGVV-WSGHRDGRIMCWKMNARLL 225 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~-~V~~la~s~dg~~L-aSGS~DgtIrlWdl~~~~~ 225 (1115)
+.+++|++||++++..... .. ..+.. .+.+++|+|+|+.| ++++.+++|.+||+.++.
T Consensus 8 ~~~~~v~~~d~~~~~~~~~------------------~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~- 67 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKV------------------IT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE- 67 (337)
T ss_dssp ETTTEEEEEETTTTEEEEE------------------EE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-
T ss_pred CCCCeEEEEECCCCcEEEE------------------EE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-
Confidence 5789999999998876542 11 11011 36789999999765 666778999999998632
Q ss_pred CCCCCCcceEEee-cC----CCCEEEEEEeCCCc-EEEEe------------CCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 226 DSDDGFGEVLSWQ-AH----RGPVLSLCISSYGD-LWSGS------------EGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 226 ~~~~~~~~~~~l~-GH----~~~V~sVafSpdG~-L~SgS------------~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
....+. ++ ...+.+++|+|+|+ |+.++ .|+.|++||+++++....+
T Consensus 68 -------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--------- 131 (337)
T 1pby_B 68 -------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF--------- 131 (337)
T ss_dssp -------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---------
T ss_pred -------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE---------
Confidence 233343 22 22677899999997 66665 5799999999876433110
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCcc
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFA 367 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~ 367 (1115)
.. . ..+..+++++++..++.+ ++.|.+||+.+++.+..+..+... ..+.++++....
T Consensus 132 --------~~---~----------~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 132 --------EA---P----------RQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp --------EC---C----------SSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred --------eC---C----------CCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 00 0 123346677788777766 578999999999988877543311 011233322211
Q ss_pred cc---ccceE-EEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-cc-----cccCCCceEEEEEcCCCc-EEEE
Q 001245 368 ME---DEFKT-KIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GG-----FGDDNRRTEALTTSIDGM-IWTG 436 (1115)
Q Consensus 368 ~~---~~~~~-~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g~-----l~~h~~~V~aVa~S~Dg~-laSG 436 (1115)
+- ....+ ..+... ....+..........+..|+.. +. +..+...+..++++|||. ++++
T Consensus 189 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 189 WNQHESSGVMATPFYTA----------RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp CCCCTTTTEEEEEEEEE----------BTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred eeeccCCCceeeeeecc----------ccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 00 00000 000000 0000000000000012333321 11 122334566788999987 5555
Q ss_pred eCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccccccccc
Q 001245 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAH 497 (1115)
Q Consensus 437 S~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH 497 (1115)
|+.|.+||+ +++.+..+..+ ..+.+++ +||++|++++.++.|++||++ ++.+..+..+
T Consensus 259 --~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 259 --YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp --ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred --CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 789999999 67777777644 3455666 688989988889999999986 6666666544
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=2.5e-16 Score=191.47 Aligned_cols=256 Identities=11% Similarity=0.010 Sum_probs=173.0
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCCCCCCCCCcceEEeecCC-CCEEEEEEeCCCc-EEEEeC---CCcE
Q 001245 191 VSSVMCMVGDEASGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-LWSGSE---GGGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~-DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~-~~V~sVafSpdG~-L~SgS~---DgtI 264 (1115)
..+|.+++|+|||+.||+++. ||++++|+++++ ....+..|. ..|.+++|||| + +++++. +...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---------ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---------EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---------CcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 468999999999999999987 999999999762 345566665 68999999999 7 566665 5667
Q ss_pred EEEeCCC--cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCC--EEEeecCCeEEEEEcC
Q 001245 265 KIWPWEA--IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRA--KVWSAGFLSFALWDAR 340 (1115)
Q Consensus 265 rvWdl~t--~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~--~v~S~sd~tI~lWD~~ 340 (1115)
+||.+.. ......+.. . ......++++++. .++++..+.+.|||+.
T Consensus 91 ~l~~~~~~~~g~~~~l~~-------------------~-----------~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQRLEA-------------------V-----------KPMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp EEEEEETTSTTCCEECTT-------------------S-----------CSBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred EEEEEeccCCCccccccC-------------------C-----------CCceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 7776543 111101100 0 0111223333332 3444555556699999
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-----cEEEEecc-c-
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-----AVRRVAAK-G- 413 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-----~v~~~~~~-g- 413 (1115)
+|++.+...... ..+.|+++++.++.++.+ .+++|+.. +
T Consensus 141 ~g~~~~l~~~~~----------------------------------~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~ 186 (582)
T 3o4h_A 141 GGGLRELARLPG----------------------------------FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG 186 (582)
T ss_dssp TTEEEEEEEESS----------------------------------CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCcEEEeecCCC----------------------------------ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC
Confidence 998765543222 123455666655543322 36666642 2
Q ss_pred --ccccCCCceEEEEEcCCCc-EEEEeCCC--eEEEEcC-CCCeeEEeecCCCcEEE----------EEecCCEEEeeec
Q 001245 414 --GFGDDNRRTEALTTSIDGM-IWTGGANG--LLLQWDP-NGNRLQDFQYLPFAVQC----------LCTFGSQIWVGYM 477 (1115)
Q Consensus 414 --~l~~h~~~V~aVa~S~Dg~-laSGS~Dg--tIklWD~-tG~~l~tl~gH~~~V~s----------la~dG~~LaSGs~ 477 (1115)
.+..+...+..++|||||+ |+++..|+ +|++||+ +|++. .+.+|...|.+ +.+||.++++++.
T Consensus 187 ~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 187 LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 3456777889999999998 77778888 8999999 66766 77788765542 4578999999999
Q ss_pred ccEEEEEeCCCccccccccccCCEEEEEe-cCCEEEeecCCCc---eEEeee
Q 001245 478 NGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGG---IRGWNV 525 (1115)
Q Consensus 478 DGtIrlWD~~G~ll~~l~gH~~~V~sva~-dg~~laSgS~Dgt---IRlWdl 525 (1115)
||+++||++ |+++.. +.+.|.++++ ||+++++++.+.+ +.+|+.
T Consensus 266 ~g~~~l~~~-g~~~~~---~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 266 EGRSAVFID-GERVEA---PQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp TTEEEEEET-TEEECC---CSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred CCcEEEEEE-CCeecc---CCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 999999999 877653 3356777664 7888888887754 555553
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.71 E-value=1e-15 Score=190.07 Aligned_cols=275 Identities=13% Similarity=0.067 Sum_probs=173.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCC
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~ 270 (1115)
..|.+++|+|| +.|+.+ .|++|++||+.++ ....+..|.+.|.+++|||||+ |++ +.|++|++||+.
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---------~~~~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~ 149 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---------KVTYLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGG 149 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---------EEEEEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECB
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---------ceEEccCCcccccCCcCCCCCCEEEE-EECCeEEEEecC
Confidence 57999999999 555544 4699999999863 3455677888899999999998 666 478999999998
Q ss_pred C-----cceeeccCCCcceeEEEEeeeeeeeecccceeccee--eeecCCeEEEEEeCCCCEEEeec-------------
Q 001245 271 A-----IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFS--SILTSDIKNLLSDHSRAKVWSAG------------- 330 (1115)
Q Consensus 271 t-----~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~--~~~s~~v~~las~~~~~~v~S~s------------- 330 (1115)
+ ++............ .++.. ......+..+++++++..|+.++
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~-----------------~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~ 212 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETL-----------------VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD 212 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTE-----------------EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred cccccCCCcEEeccCCCCCe-----------------EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence 7 55431111100000 00000 00001234566677777766553
Q ss_pred ---------------------CCeEEEEEcCCccEEEEEec--CCceeeEEeccCCCCccccccceEEEEecCCCCccce
Q 001245 331 ---------------------FLSFALWDARTRELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQS 387 (1115)
Q Consensus 331 ---------------------d~tI~lWD~~tg~ll~tl~~--~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1115)
+..|.+||+.+++....... +...+..+.++++
T Consensus 213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd------------------------ 268 (706)
T 2z3z_A 213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPD------------------------ 268 (706)
T ss_dssp CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTT------------------------
T ss_pred cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECC------------------------
Confidence 24689999998886554421 2233344455543
Q ss_pred eeeeeccccceEEeccC------cEEEEecc-c-c---cc--cCCC---ceEEEEEcC--CCc-EEEEeCCCeEEEEcC-
Q 001245 388 SFGFFQRSRNAIMGAAD------AVRRVAAK-G-G---FG--DDNR---RTEALTTSI--DGM-IWTGGANGLLLQWDP- 447 (1115)
Q Consensus 388 ~v~f~~~~~~~~~Gs~d------~v~~~~~~-g-~---l~--~h~~---~V~aVa~S~--Dg~-laSGS~DgtIklWD~- 447 (1115)
++.++.+..+ .+.+|+.. + . +. .+.. .+..++++| ||. +++++.|++++||++
T Consensus 269 -------g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 269 -------ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp -------SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred -------CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 3322222111 23334331 1 0 00 1111 235678999 998 678888999999986
Q ss_pred -CCCeeEEeecCCCcEEE-EE--ecCCEEEeeec-cc----EEEEEeCCCccccccccccCCEEEEEe--cCCEEEeecC
Q 001245 448 -NGNRLQDFQYLPFAVQC-LC--TFGSQIWVGYM-NG----IVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGYIFTLAN 516 (1115)
Q Consensus 448 -tG~~l~tl~gH~~~V~s-la--~dG~~LaSGs~-DG----tIrlWD~~G~ll~~l~gH~~~V~sva~--dg~~laSgS~ 516 (1115)
+|..++.+..|...|.+ ++ +||++|+.++. ++ .|..||+++..+..+. |...+.++++ ||++++..+.
T Consensus 342 ~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~spdg~~l~~~~~ 420 (706)
T 2z3z_A 342 TTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT-PESGMHRTQLSPDGSAIIDIFQ 420 (706)
T ss_dssp TTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC-CSSSEEEEEECTTSSEEEEEEE
T ss_pred CCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc-CCCceEEEEECCCCCEEEEEec
Confidence 68889999998888876 45 78988776554 44 7788887643344444 6777888775 7888776533
Q ss_pred -C---CceEEeeecC
Q 001245 517 -H---GGIRGWNVTS 527 (1115)
Q Consensus 517 -D---gtIRlWdl~~ 527 (1115)
+ +.|++||+.+
T Consensus 421 ~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 421 SPTVPRKVTVTNIGK 435 (706)
T ss_dssp CSSCSCEEEEEESSS
T ss_pred CCCCCcEEEEEECCC
Confidence 3 5699999865
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.71 E-value=5.3e-16 Score=193.55 Aligned_cols=279 Identities=7% Similarity=-0.012 Sum_probs=170.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t 271 (1115)
.|.+++|||||+.|++++. ++|++||+.++.. .....+.+|.+.|.+++|||||+ |++++ +++|++||+.+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGK------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCST------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCc------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 4778999999999999997 9999999987310 02345778889999999999998 67776 56999999988
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CC------------------
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FL------------------ 332 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~------------------ 332 (1115)
++...........+. .++. ..+.......+..+++++++..|+.++ +.
T Consensus 182 g~~~~~~~~~~~~~~-----------~g~~--~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 182 GRQMQLTADGSTTIG-----------NGIA--EFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp TEEEECCCCCCSSEE-----------ESCC--CHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred CCEEEeccCCcccee-----------cccc--ceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence 654321111000000 0000 000000001123455666666665543 22
Q ss_pred ---------------eEEEEEcCC-ccEEEEEec--CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecc
Q 001245 333 ---------------SFALWDART-RELLKVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (1115)
Q Consensus 333 ---------------tI~lWD~~t-g~ll~tl~~--~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~ 394 (1115)
.|.+||+.+ ++....... +...+. .+.| ++
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~-pD 296 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLA-------------------------------RVNW-RD 296 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEE-------------------------------EEEE-EE
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEE-------------------------------EEEe-CC
Confidence 577778877 765443321 222222 3344 45
Q ss_pred ccceEEecc------CcEEEEecc-cc----cccCC-C---ceEEEEEcCCCc-EEEEeCCCeEEEEcC--CCCeeEEee
Q 001245 395 SRNAIMGAA------DAVRRVAAK-GG----FGDDN-R---RTEALTTSIDGM-IWTGGANGLLLQWDP--NGNRLQDFQ 456 (1115)
Q Consensus 395 ~~~~~~Gs~------d~v~~~~~~-g~----l~~h~-~---~V~aVa~S~Dg~-laSGS~DgtIklWD~--tG~~l~tl~ 456 (1115)
++.++.+.. ..+.+|+.. +. +..+. . .+..++|+|||+ +++++.|++++||.+ +|. +..+.
T Consensus 297 g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 297 PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 444433221 134445432 11 11111 1 345789999998 578888998888765 577 88898
Q ss_pred cCCCcEEEE---EecCCEEE-eeeccc--EEEEEeCC--CccccccccccCCEEEEEe--cCCEEEeecCC----CceEE
Q 001245 457 YLPFAVQCL---CTFGSQIW-VGYMNG--IVQVLDLE--GNLLGGWVAHSSPVIKMAV--GAGYIFTLANH----GGIRG 522 (1115)
Q Consensus 457 gH~~~V~sl---a~dG~~La-SGs~DG--tIrlWD~~--G~ll~~l~gH~~~V~sva~--dg~~laSgS~D----gtIRl 522 (1115)
.|...|.++ .+||++|+ +++.++ +++||+++ |+.+..+.+ ...+.++++ ||++++....+ ..+.+
T Consensus 376 ~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l 454 (741)
T 2ecf_A 376 HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL 454 (741)
T ss_dssp CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence 888888765 37898775 455555 89999864 666677766 566777774 78877754322 46777
Q ss_pred eeec
Q 001245 523 WNVT 526 (1115)
Q Consensus 523 Wdl~ 526 (1115)
|+..
T Consensus 455 ~~~~ 458 (741)
T 2ecf_A 455 FRAN 458 (741)
T ss_dssp EETT
T ss_pred EEcC
Confidence 7753
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.70 E-value=6.6e-15 Score=165.02 Aligned_cols=266 Identities=9% Similarity=0.039 Sum_probs=178.0
Q ss_pred cceeeEEEEEe--CCeEEEeC--------CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEc
Q 001245 131 IGCFLRTIVCT--EEQLWAGG--------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGD 200 (1115)
Q Consensus 131 ~~~~l~~l~~~--~~~l~ag~--------D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s 200 (1115)
.+.....++.+ ++.++++. +++|.+||++++..... .. . ...+.+++++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~------------------~~-~--~~~~~~~~~s 97 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA------------------IH-N--DLKPFGATIN 97 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE------------------EE-E--SSCCCSEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE------------------Ee-c--CCCcceEEEC
Confidence 33344455555 44677643 67899999998876542 11 1 2345678999
Q ss_pred CCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCC---------EEEEEEeCCCc-EEEEe--CCCcEEEE
Q 001245 201 EASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP---------VLSLCISSYGD-LWSGS--EGGGIKIW 267 (1115)
Q Consensus 201 ~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~---------V~sVafSpdG~-L~SgS--~DgtIrvW 267 (1115)
++|+ +++++..|++|.+||+.++ +....+..+.+. +.+++|+|+|+ |+.++ .+++|.+|
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTG--------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTC--------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEeCCCC--------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 9999 4556667899999999873 234455544322 78999999997 65444 58999999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
|+++++....+. .+. .....+++++++..++.+. ++.|.+||+.+++.+.
T Consensus 170 d~~~~~~~~~~~-------------------~~~----------~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~ 220 (353)
T 3vgz_A 170 DGGNIKLKTAIQ-------------------NTG----------KMSTGLALDSEGKRLYTTNADGELITIDTADNKILS 220 (353)
T ss_dssp ETTTTEEEEEEC-------------------CCC----------TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred cCCCCceEEEec-------------------CCC----------CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE
Confidence 998865431110 011 1233456677777776654 5789999999998776
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEE
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALT 426 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa 426 (1115)
.+.... .++...+..++
T Consensus 221 ~~~~~~---------------------------------------------------------------~~~~~~~~~~~ 237 (353)
T 3vgz_A 221 RKKLLD---------------------------------------------------------------DGKEHFFINIS 237 (353)
T ss_dssp EEECCC---------------------------------------------------------------SSSCCCEEEEE
T ss_pred EEEcCC---------------------------------------------------------------CCCCcccceEE
Confidence 552100 01112345678
Q ss_pred EcCCCc-EEEEe-CCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeee-cccEEEEEeCC-CccccccccccCCE
Q 001245 427 TSIDGM-IWTGG-ANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAHSSPV 501 (1115)
Q Consensus 427 ~S~Dg~-laSGS-~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs-~DGtIrlWD~~-G~ll~~l~gH~~~V 501 (1115)
++|||. ++.++ .++.|.+||. +|+.+..+..+...-.++.++|++|++++ .+++|.+||+. ++.+..+..+. .+
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~ 316 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HP 316 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EE
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CC
Confidence 889887 65544 4599999999 89988888765443334458999777666 68999999986 77777776544 56
Q ss_pred EEEEe--cCCEEEeecCCC
Q 001245 502 IKMAV--GAGYIFTLANHG 518 (1115)
Q Consensus 502 ~sva~--dg~~laSgS~Dg 518 (1115)
.++++ ||++++.+..++
T Consensus 317 ~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEECTTSCEEEEEEECC
T ss_pred CeEEEcCCCCEEEEEEccc
Confidence 77775 788777665543
No 150
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.68 E-value=7.3e-15 Score=163.90 Aligned_cols=265 Identities=8% Similarity=0.049 Sum_probs=167.0
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeC-CCeEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR-DGRIMCW 218 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~-DgtIrlW 218 (1115)
.+.+|+ +.+++|++||++++..... .. .+ ...+ +++|+|+|+.|+.++. |++|.+|
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~------------------~~-~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQ------------------IT-LG-YDFV-DTAITSDCSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEE------------------EE-CC-CCEE-EEEECSSSCEEEEEESTTCEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeee------------------EE-cc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEE
Confidence 445565 4788999999998876542 11 22 3456 9999999996666665 8999999
Q ss_pred ECCCCCCCCCCCCcc-eEEeecCCCCEEEEEEeCCCc-EEEEeCC-C--cEEEEeCCCcceeeccCCCcceeEEEEeeee
Q 001245 219 KMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGD-LWSGSEG-G--GIKIWPWEAIEKALSLKPEERHTAALIVERS 293 (1115)
Q Consensus 219 dl~~~~~~~~~~~~~-~~~l~GH~~~V~sVafSpdG~-L~SgS~D-g--tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~ 293 (1115)
|+.++. . ...+..|..++.+++|+|+|+ |+++..+ + +|++||+++++....+
T Consensus 68 d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~--------------- 124 (331)
T 3u4y_A 68 ETQLEP--------PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI--------------- 124 (331)
T ss_dssp ECSSSS--------CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE---------------
T ss_pred ECCCCc--------eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE---------------
Confidence 998632 2 456677888877799999998 6754444 2 9999999876543110
Q ss_pred eeeecccceecceeeeecCCeEEEEEeCCCCEEEee-c-CCe-EEEEEcCCccEEEEEecCCceeeEEeccCCCCccccc
Q 001245 294 YIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-FLS-FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1115)
Q Consensus 294 ~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-s-d~t-I~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~ 370 (1115)
..+ .....+++++++..++.+ . ++. |.+|++.....+.... ...
T Consensus 125 ----~~~-----------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~---------------- 171 (331)
T 3u4y_A 125 ----PIP-----------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEF---------------- 171 (331)
T ss_dssp ----ECC-----------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEE----------------
T ss_pred ----ECC-----------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--Ccc----------------
Confidence 001 234577888888755544 3 467 9999987543221110 000
Q ss_pred cceEEEEecCCCCccceeeeeeccccceEE-ec-cCcEEEEecc-ccc---c---cCCCceEEEEEcCCCc-EEEE-eCC
Q 001245 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GA-ADAVRRVAAK-GGF---G---DDNRRTEALTTSIDGM-IWTG-GAN 439 (1115)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-Gs-~d~v~~~~~~-g~l---~---~h~~~V~aVa~S~Dg~-laSG-S~D 439 (1115)
.. .......+.|+++++.++. +. .+.+..|+.. +.. . .....+..++++|||+ ++.+ ..+
T Consensus 172 ------~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 242 (331)
T 3u4y_A 172 ------IS---GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTEST 242 (331)
T ss_dssp ------EC---SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSE
T ss_pred ------cc---CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCC
Confidence 00 0011234466666654433 32 2346666543 332 1 1234567799999998 5544 457
Q ss_pred CeEEEEcC-CCCe--eEEeecC----CCcE-----EEEEecCCEEEeeec-ccEEEEEeCCCcccc
Q 001245 440 GLLLQWDP-NGNR--LQDFQYL----PFAV-----QCLCTFGSQIWVGYM-NGIVQVLDLEGNLLG 492 (1115)
Q Consensus 440 gtIklWD~-tG~~--l~tl~gH----~~~V-----~sla~dG~~LaSGs~-DGtIrlWD~~G~ll~ 492 (1115)
+.|.+||. +|++ +.++..+ ...+ .++.+||++|++++. +++|++||+++..+.
T Consensus 243 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 243 VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 89999999 6766 5554433 2222 244489999876664 679999999865443
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.68 E-value=7.1e-15 Score=165.81 Aligned_cols=247 Identities=12% Similarity=0.121 Sum_probs=158.1
Q ss_pred CCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCCcEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHR---DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGIK 265 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~---DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~DgtIr 265 (1115)
...+..++|+|+|+ |++++. |+.|++|+++++.. +.+..+.+|...+..|+|+|||+ |++++ .+++|+
T Consensus 39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 34567799999999 555544 68999999976321 23344566888899999999998 77776 789999
Q ss_pred EEeCCC-cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcC-Cc
Q 001245 266 IWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TR 342 (1115)
Q Consensus 266 vWdl~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~-tg 342 (1115)
+|++.. +.... +.. +...+.... .......+.++++++++..+++.. ++.|.+||+. +|
T Consensus 112 v~~~~~~g~~~~--------~~~-------~~~~~~~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 112 VMKIAADGALTL--------TDT-------VQHSGHGPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp EEEECTTSCEEE--------EEE-------EECCCCCSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred EEEeCCCCCeee--------cce-------eecCCCCCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 999963 21110 000 000000000 000113466788888888444443 5789999987 45
Q ss_pred cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCce
Q 001245 343 ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRT 422 (1115)
Q Consensus 343 ~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V 422 (1115)
++..... .. ......+
T Consensus 174 ~~~~~~~---------------------------~~-------------------------------------~~~g~~p 189 (347)
T 3hfq_A 174 QLSEQSV---------------------------LT-------------------------------------MEAGFGP 189 (347)
T ss_dssp CEEEEEE---------------------------EE-------------------------------------CCTTCCE
T ss_pred cEEEeee---------------------------EE-------------------------------------cCCCCCC
Confidence 4321100 00 0001124
Q ss_pred EEEEEcCCCc-EE-EEeCCCeEEEEcCC---CCe--eEEeecCC------CcEEEEE--ecCCEEEe-eecccEEEEEeC
Q 001245 423 EALTTSIDGM-IW-TGGANGLLLQWDPN---GNR--LQDFQYLP------FAVQCLC--TFGSQIWV-GYMNGIVQVLDL 486 (1115)
Q Consensus 423 ~aVa~S~Dg~-la-SGS~DgtIklWD~t---G~~--l~tl~gH~------~~V~sla--~dG~~LaS-Gs~DGtIrlWD~ 486 (1115)
..++++|||+ ++ ++..++.|++||++ |+. ++.+.... ..+..++ +||++|++ +..+++|.+||+
T Consensus 190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 5688999998 55 45678999999983 443 33444333 3466777 78998855 456899999998
Q ss_pred C--C--ccccccccccCCEEEEEe--cCCEEEeecC-CCceEEeeec
Q 001245 487 E--G--NLLGGWVAHSSPVIKMAV--GAGYIFTLAN-HGGIRGWNVT 526 (1115)
Q Consensus 487 ~--G--~ll~~l~gH~~~V~sva~--dg~~laSgS~-DgtIRlWdl~ 526 (1115)
+ | +.+..+..|...+.++++ ||++|++++. +++|++|++.
T Consensus 270 ~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 270 TADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 5 4 345666677677778775 7888887765 5999999764
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=1.3e-14 Score=162.22 Aligned_cols=282 Identities=9% Similarity=0.023 Sum_probs=165.4
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEE-EEEeCCCeEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVV-WSGHRDGRIMCW 218 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~L-aSGS~DgtIrlW 218 (1115)
++.+++ +.+++|++||++++..... .. .++...+..++++|+|+.+ ++++.+++|.+|
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~------------------~~-~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~ 70 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKS------------------CV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 70 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEE------------------EE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEE------------------Ee-cCCCCCCceeEECCCCCEEEEEeCCCCcEEEE
Confidence 455555 5789999999998876542 11 1101246689999999855 566789999999
Q ss_pred ECCCCCCCCCCCCcceEEee-cC-----CCCEEEEEEeCCCc-EEEEeCC------------CcEEEEeCCCcceeeccC
Q 001245 219 KMNARLLDSDDGFGEVLSWQ-AH-----RGPVLSLCISSYGD-LWSGSEG------------GGIKIWPWEAIEKALSLK 279 (1115)
Q Consensus 219 dl~~~~~~~~~~~~~~~~l~-GH-----~~~V~sVafSpdG~-L~SgS~D------------gtIrvWdl~t~~~~l~~~ 279 (1115)
|+.++ +....+. +| ...+.+++|+|||+ |++++.| ++|.+||+++++.....
T Consensus 71 d~~t~--------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~- 141 (349)
T 1jmx_B 71 DLDTC--------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV- 141 (349)
T ss_dssp ETTTT--------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred eCCCC--------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence 99863 2233443 22 23378999999997 7777655 99999999875422000
Q ss_pred CCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEe
Q 001245 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVD 359 (1115)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~ 359 (1115)
. ... + + ..+.++++++++. ++.++ ..|.+||+.+++.+..+........ ..
T Consensus 142 ------~---------~~~-~---------~-~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~-~~ 192 (349)
T 1jmx_B 142 ------R---------TFP-M---------P-RQVYLMRAADDGS-LYVAG-PDIYKMDVKTGKYTVALPLRNWNRK-GY 192 (349)
T ss_dssp ------E---------EEE-C---------C-SSCCCEEECTTSC-EEEES-SSEEEECTTTCCEEEEECSTTCCCT-TB
T ss_pred ------e---------ecc-C---------C-CcccceeECCCCc-EEEcc-CcEEEEeCCCCceeccccccccCCc-cc
Confidence 0 000 0 0 1344566777777 55543 4599999999998887753220000 00
Q ss_pred ccCCCCccccccceEEEEecCCCCc---cceeeeeecccc-----------ce-EEeccCcEEEEecccccccCCCceEE
Q 001245 360 MSLLPDFAMEDEFKTKIVTSSKKDK---AQSSFGFFQRSR-----------NA-IMGAADAVRRVAAKGGFGDDNRRTEA 424 (1115)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~f~~~~~-----------~~-~~Gs~d~v~~~~~~g~l~~h~~~V~a 424 (1115)
+++.... +|....... ....+.+.+++. .+ +....+.+..+.. ..+...+..
T Consensus 193 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 259 (349)
T 1jmx_B 193 SAPDVLY---------FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF----ADLTELYFT 259 (349)
T ss_dssp CCCBCCC---------CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE----EECSSCEEE
T ss_pred cCcccee---------eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc----ccCCCccee
Confidence 0000000 000000000 000111111100 00 0111122333322 123345778
Q ss_pred EEEcC-CCc-EEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccc
Q 001245 425 LTTSI-DGM-IWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA 496 (1115)
Q Consensus 425 Va~S~-Dg~-laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g 496 (1115)
++++| ||. ++++ ++.|.+||+ +++.++.+..+ ..+.+++ ++|++|++++.+++|++||++ ++.+..+..
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 89999 987 5555 889999999 78888877643 3455666 789999999889999999986 666655543
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.66 E-value=2e-14 Score=161.16 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=165.7
Q ss_pred CceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EE-EEeCCC
Q 001245 192 SSVMCMVGDEASGVVWSGHR-------DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LW-SGSEGG 262 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~-------DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~-SgS~Dg 262 (1115)
..+..++++|+|+.|+.++. +++|.+||+.++ +....+.. ...+.+++|+|+|+ ++ +++.++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--------EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--------CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--------eEEEEEec-CCCcceEEECCCCCEEEEEecCCC
Confidence 45778999999999998885 568999999863 23344443 34478899999998 54 666789
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec---CCeEEEEEc
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDA 339 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s---d~tI~lWD~ 339 (1115)
+|.+||+++++....+. + +.... ...........+++++++..++.+. ++.|.+||+
T Consensus 112 ~v~~~d~~~~~~~~~~~-----------------~--~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLV-----------------L--DDRKR-TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EEEEEETTTCCEEEEEE-----------------S--CCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred EEEEEeCCCCeeEEEEe-----------------c--CCCcc-ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 99999998875432111 0 00000 0000001145678888888777654 567999999
Q ss_pred CCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC
Q 001245 340 RTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN 419 (1115)
Q Consensus 340 ~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~ 419 (1115)
.+++.++.+...+
T Consensus 172 ~~~~~~~~~~~~~------------------------------------------------------------------- 184 (353)
T 3vgz_A 172 GNIKLKTAIQNTG------------------------------------------------------------------- 184 (353)
T ss_dssp TTTEEEEEECCCC-------------------------------------------------------------------
T ss_pred CCCceEEEecCCC-------------------------------------------------------------------
Confidence 9988776552111
Q ss_pred CceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEEeec----CCCcEEEEE--ecCCEEEeeec-ccEEEEEeCC-Cc
Q 001245 420 RRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQDFQY----LPFAVQCLC--TFGSQIWVGYM-NGIVQVLDLE-GN 489 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~tl~g----H~~~V~sla--~dG~~LaSGs~-DGtIrlWD~~-G~ 489 (1115)
..+..+++++||. +++++.|+.|.+||. +++.+..+.. +...+.+++ ++|++|++++. ++.|.+||++ ++
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 0123356778876 788888999999999 8888887764 455676666 78998887765 5999999986 77
Q ss_pred cccccccccCCEEEEEecCCEEE-eecCCCceEEeeecC
Q 001245 490 LLGGWVAHSSPVIKMAVGAGYIF-TLANHGGIRGWNVTS 527 (1115)
Q Consensus 490 ll~~l~gH~~~V~sva~dg~~la-SgS~DgtIRlWdl~~ 527 (1115)
.+..+..+...-..+.++|++++ +...+++|.+||+.+
T Consensus 265 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 265 ILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 77766655443334456888655 555799999999765
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.66 E-value=1.2e-14 Score=161.23 Aligned_cols=255 Identities=11% Similarity=0.085 Sum_probs=160.8
Q ss_pred CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee-cCCC-CEEEEEEeCCCc-E-EEEeCCCcEEEEeCCCcceeeccC
Q 001245 204 GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRG-PVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIEKALSLK 279 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~-GH~~-~V~sVafSpdG~-L-~SgS~DgtIrvWdl~t~~~~l~~~ 279 (1115)
.+|++++.|++|++||+.++ +....+. ++.. .+.+++|+|+|+ | ++++.+++|.+||+.+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~ 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM--------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT--------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC--------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence 47899999999999999863 2344443 3322 478999999996 5 577788999999998865432111
Q ss_pred CCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-------------cCCeEEEEEcCCccEEE
Q 001245 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-------------GFLSFALWDARTRELLK 346 (1115)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-------------sd~tI~lWD~~tg~ll~ 346 (1115)
+.... ... ..+..+++++++..++.+ .++.|.+||+.+++.++
T Consensus 74 -----------------~~~~~---~~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 74 -----------------LSTPE---ERV----KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp -----------------CCBTT---EEE----ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred -----------------cCCcc---ccc----ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 00000 000 122346677777777766 35889999999999887
Q ss_pred EEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-cccc----cCCCc
Q 001245 347 VFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFG----DDNRR 421 (1115)
Q Consensus 347 tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g~l~----~h~~~ 421 (1115)
.+.....+ ..+.+ +++++.++.+ .+.+..|+.. +... .+. .
T Consensus 130 ~~~~~~~~-~~~~~-------------------------------s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~ 175 (337)
T 1pby_B 130 AFEAPRQI-TMLAW-------------------------------ARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-W 175 (337)
T ss_dssp EEECCSSC-CCEEE-------------------------------CTTSSCEEEE-SSSEEEEETTTTEEEEEECSTT-T
T ss_pred EEeCCCCc-ceeEE-------------------------------CCCCCEEEEe-CCeEEEEECCCCcEeeeeeccc-c
Confidence 76542221 22233 3333333333 2334444432 1110 000 0
Q ss_pred eEEEEEcCCCc-EEEEe-CCC-----------------------eEEEEcC-CCCee-EEeecCCCcEEEEE--ecCCEE
Q 001245 422 TEALTTSIDGM-IWTGG-ANG-----------------------LLLQWDP-NGNRL-QDFQYLPFAVQCLC--TFGSQI 472 (1115)
Q Consensus 422 V~aVa~S~Dg~-laSGS-~Dg-----------------------tIklWD~-tG~~l-~tl~gH~~~V~sla--~dG~~L 472 (1115)
...++++|||. ++..+ .++ .|.+||+ ++++. ..+..|...+.+++ +||++|
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 01125566665 33222 222 5799999 67664 33455666777777 789999
Q ss_pred EeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 473 WVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 473 aSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+++ +++|.+||++ ++.+..+..+ ..+.++++ ||+++++++.|+.|++||+.+
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~ 310 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred EEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence 998 7999999987 6766666544 34566764 788999999999999999875
No 155
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.64 E-value=1e-15 Score=190.24 Aligned_cols=279 Identities=9% Similarity=-0.016 Sum_probs=177.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCC---CEEEEEEeCCCc-EEEEeCC-------
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSEG------- 261 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~---~V~sVafSpdG~-L~SgS~D------- 261 (1115)
.+.+++|+|||+++++ +.||+|++||++++. ....+.+|.. .|.+++|||||+ |++++.|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~--------~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT--------STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC--------CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc--------EEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 3567899999998887 789999999998742 3455667765 499999999998 7888765
Q ss_pred --CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEc
Q 001245 262 --GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDA 339 (1115)
Q Consensus 262 --gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~ 339 (1115)
++|++||+++++.. .+.. ..+|. ..+..+++++++..|+.+++++|.+||+
T Consensus 89 ~~~~i~~~d~~~~~~~-~l~~----------------~~~~~----------~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDPQ-SLDP----------------PEVSN----------AKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp CCSEEEEEESSSCCCE-ECCC----------------TTCCS----------CCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ceeeEEEEECCCCceE-eccC----------------Ccccc----------ccccccEECCCCCEEEEEECCeEEEEEC
Confidence 78889999886542 1110 01111 2234556788888888888889999999
Q ss_pred CCccEEEEEecCCc-eeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC--cEEEEecccccc
Q 001245 340 RTRELLKVFNIDGQ-IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD--AVRRVAAKGGFG 416 (1115)
Q Consensus 340 ~tg~ll~tl~~~~~-~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d--~v~~~~~~g~l~ 416 (1115)
.+|+..+....+.. ++. ....+...+++. ......+.|+++++.++.++.+ .+..|.......
T Consensus 142 ~~g~~~~~~~~~~~~~~~----~g~~~~v~~ee~----------~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 142 VGKQAIRVVSTGKEGVIY----NGLSDWLYEEEI----------LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp SSSCCEEEECCCBTTTEE----EEECCHHHHHTT----------SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred CCCceEEEecCCCCCceE----CcccceeEEEEe----------ccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 99987766543211 100 000000000000 0011346777887766665432 233333221111
Q ss_pred cCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecC------CCcEEEEE--ecCCEEEeee----cccEEEE
Q 001245 417 DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYL------PFAVQCLC--TFGSQIWVGY----MNGIVQV 483 (1115)
Q Consensus 417 ~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH------~~~V~sla--~dG~~LaSGs----~DGtIrl 483 (1115)
.+...+..+.++++|.. ..+.+|++||+ ++++...+..| ...|.+++ |||++|++++ .+..|++
T Consensus 208 ~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 23345778888888763 34568999999 67766777765 56788887 8999997765 3478999
Q ss_pred EeCC-Ccccccccc-ccCCEE----EEE--ecCCEEEe--ecCCC------ceEEee
Q 001245 484 LDLE-GNLLGGWVA-HSSPVI----KMA--VGAGYIFT--LANHG------GIRGWN 524 (1115)
Q Consensus 484 WD~~-G~ll~~l~g-H~~~V~----sva--~dg~~laS--gS~Dg------tIRlWd 524 (1115)
||++ |++...+.. |.+.+. +++ +||+.|+. ...|+ .|.+||
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 9987 666555544 344443 444 58887764 45666 455566
No 156
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.64 E-value=1e-14 Score=157.56 Aligned_cols=213 Identities=10% Similarity=-0.055 Sum_probs=150.8
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCC-cceeeccCCCccee
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEA-IEKALSLKPEERHT 285 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t-~~~~l~~~~~~~~~ 285 (1115)
+++.|++|++||+.++ ....+.+|.+.|.+++|+|+|+ |++++ ++.|++||+++ ++.....
T Consensus 17 ~~~~~~~i~~~d~~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~------- 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---------KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD------- 79 (297)
T ss_dssp -CCCCEEEEEEETTTT---------EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-------
T ss_pred CCCcceeEEEEeCCCC---------ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-------
Confidence 5678999999999873 3456778999999999999998 66665 88999999988 6543111
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC---CeEEEEEc--CCccEEEEEecCCceeeEEec
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF---LSFALWDA--RTRELLKVFNIDGQIENRVDM 360 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd---~tI~lWD~--~tg~ll~tl~~~~~~~~~v~~ 360 (1115)
.++. ...+.++++++++..++.+.. +..+||.+ .+++. +.
T Consensus 80 ------------~~~~---------~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~------------- 124 (297)
T 2ojh_A 80 ------------TGFA---------TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RL------------- 124 (297)
T ss_dssp ------------CTTC---------CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EE-------------
T ss_pred ------------cccc---------cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EE-------------
Confidence 1111 022344566777777776551 34555553 22211 00
Q ss_pred cCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EE-EEeC
Q 001245 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGA 438 (1115)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-la-SGS~ 438 (1115)
+.. ...+..++++|||. |+ +++.
T Consensus 125 ------------------------------------------------------~~~-~~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 125 ------------------------------------------------------MTK-NLPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp ------------------------------------------------------CCS-SSSEEEEEECTTSSEEEEEEEE
T ss_pred ------------------------------------------------------eec-CCCccceEECCCCCEEEEEECC
Confidence 000 11255678899987 55 7888
Q ss_pred CCeEEEEcC--CCCeeEEeecCCCcEEEEE--ecCCEEEeee-cccEEEEEeC--CCccccccccccCCEEEEEe--cCC
Q 001245 439 NGLLLQWDP--NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDL--EGNLLGGWVAHSSPVIKMAV--GAG 509 (1115)
Q Consensus 439 DgtIklWD~--tG~~l~tl~gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~--~G~ll~~l~gH~~~V~sva~--dg~ 509 (1115)
|++++||++ .+.....+..|...+.+++ ++|++|+.++ .++.++||++ .+..+..+..|...+.++++ +|+
T Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 999999995 5556677888888899888 7899888766 5899999986 46677888889888888874 889
Q ss_pred EEEeecCC-----------CceEEeeecC
Q 001245 510 YIFTLANH-----------GGIRGWNVTS 527 (1115)
Q Consensus 510 ~laSgS~D-----------gtIRlWdl~~ 527 (1115)
+|+.++.| +.|.+||+.+
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 99888766 5689998764
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=6.4e-15 Score=183.44 Aligned_cols=314 Identities=7% Similarity=-0.039 Sum_probs=180.0
Q ss_pred eEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc--CCceEEEEEcCCCCEEEEEeC---------
Q 001245 144 QLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG--VSSVMCMVGDEASGVVWSGHR--------- 211 (1115)
Q Consensus 144 ~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G--~~~V~~la~s~dg~~LaSGS~--------- 211 (1115)
++++ +.|++|++||++++..... .. .+. ...|.+++|||||+.||+++.
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~~~~~------------------~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQSYTI------------------LS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp EEEEECTTSCEEEEESSSCCEEEE------------------EC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEE------------------Ec-cccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 4443 5789999999998875542 11 110 114789999999999999987
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEe
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~ 290 (1115)
|++|++||++++... . ...+ .+.|.+++|||||+ |++++ |++|++|++.+++... ++......
T Consensus 89 ~~~i~~~d~~~g~~~-----~-~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-l~~~~~~~----- 152 (719)
T 1z68_A 89 TATYYIYDLSNGEFV-----R-GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-ITFNGREN----- 152 (719)
T ss_dssp EEEEEEEETTTTEEC-----C-SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-CCCCCBTT-----
T ss_pred ceEEEEEECCCCccc-----c-ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-EecCCCcC-----
Confidence 899999999874210 0 0122 25688999999998 77765 7899999998865431 11110000
Q ss_pred eeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-C-C---------------------------------eEE
Q 001245 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F-L---------------------------------SFA 335 (1115)
Q Consensus 291 ~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d-~---------------------------------tI~ 335 (1115)
..+.|+.... ...........+++++++..|+.++ + . +|+
T Consensus 153 ----~v~~g~~~~v-~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 153 ----KIFNGIPDWV-YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp ----TEEESSCCHH-HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred ----CeEcccccce-eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 0000110000 0000001113456667776666543 1 1 567
Q ss_pred EEEcCCccEE---EE-----EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc----
Q 001245 336 LWDARTRELL---KV-----FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA---- 403 (1115)
Q Consensus 336 lWD~~tg~ll---~t-----l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~---- 403 (1115)
+||+.+++.+ +. +..+...+..+.+ +++++.+++...
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------SpD~~~~~~~~~~~~~ 276 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTW-------------------------------VTDERVCLQWLKRVQN 276 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEE-------------------------------SSSSEEEEEEEESSTT
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEE-------------------------------eCCCeEEEEEeccccC
Confidence 7887777642 11 1122333333444 444333332111
Q ss_pred -CcEEEEe----cc-c----cc----ccCCCceE-----EEEEcCCCc-EE--EEeCCC--eEEEEcCCCCeeEEeecCC
Q 001245 404 -DAVRRVA----AK-G----GF----GDDNRRTE-----ALTTSIDGM-IW--TGGANG--LLLQWDPNGNRLQDFQYLP 459 (1115)
Q Consensus 404 -d~v~~~~----~~-g----~l----~~h~~~V~-----aVa~S~Dg~-la--SGS~Dg--tIklWD~tG~~l~tl~gH~ 459 (1115)
..+.+|+ .. + .+ .++...+. .++++|||. ++ ++..++ .|.+||+++...+.+..+.
T Consensus 277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~ 356 (719)
T 1z68_A 277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGK 356 (719)
T ss_dssp EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSS
T ss_pred eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCc
Confidence 1244454 21 1 12 24455565 788999997 43 344555 6778888554466777776
Q ss_pred CcEEEEE-ecCCEEEeeecc-----cEEEEEeCC---Cc----ccc-ccccccCCEEEEEe--cCCEEE-eecCC--Cce
Q 001245 460 FAVQCLC-TFGSQIWVGYMN-----GIVQVLDLE---GN----LLG-GWVAHSSPVIKMAV--GAGYIF-TLANH--GGI 520 (1115)
Q Consensus 460 ~~V~sla-~dG~~LaSGs~D-----GtIrlWD~~---G~----ll~-~l~gH~~~V~sva~--dg~~la-SgS~D--gtI 520 (1115)
..|..+. .+|+.|+..+.+ ++++||.+. |. ++. .+.+|...+..+.+ ||++++ +++.+ .++
T Consensus 357 ~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~ 436 (719)
T 1z68_A 357 WEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPIS 436 (719)
T ss_dssp SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEE
T ss_pred eEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeE
Confidence 6676554 478777766654 889999853 32 222 24457777777764 677655 55544 578
Q ss_pred EEeeecCC
Q 001245 521 RGWNVTSP 528 (1115)
Q Consensus 521 RlWdl~~p 528 (1115)
.+||+.+.
T Consensus 437 ~l~d~~~g 444 (719)
T 1z68_A 437 TLHDGRTD 444 (719)
T ss_dssp EEECSSSC
T ss_pred EEEECCCC
Confidence 88987653
No 158
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.63 E-value=3.8e-14 Score=175.97 Aligned_cols=306 Identities=10% Similarity=-0.015 Sum_probs=180.4
Q ss_pred eEEEEEe-CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCC
Q 001245 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1115)
Q Consensus 135 l~~l~~~-~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dg 213 (1115)
+..++.+ ++.++.+.|++|++||++++..... . .+ ...+.+++|||||+.||++ .|+
T Consensus 84 v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l------------------~--~~-~~~~~~~~~SpdG~~la~~-~~~ 141 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYL------------------F--DT-NEETASLDFSPVGDRVAYV-RNH 141 (706)
T ss_dssp CEEEEETTTTEEEEEETTEEEEEETTTTEEEEE------------------E--CC-TTCCTTCEECTTSSEEEEE-ETT
T ss_pred ceeEEECCCCeEEEEECCEEEEEECCCCceEEc------------------c--CC-cccccCCcCCCCCCEEEEE-ECC
Confidence 4455555 3455567889999999988764331 1 12 3456778999999999995 789
Q ss_pred eEEEEECCC-----CCCCCCCCCcceEEeecCCCC--------------EEEEEEeCCCc-EEEEe--------------
Q 001245 214 RIMCWKMNA-----RLLDSDDGFGEVLSWQAHRGP--------------VLSLCISSYGD-LWSGS-------------- 259 (1115)
Q Consensus 214 tIrlWdl~~-----~~~~~~~~~~~~~~l~GH~~~--------------V~sVafSpdG~-L~SgS-------------- 259 (1115)
+|++||+.+ +.. ......+... +.+++|||||+ |++++
T Consensus 142 ~i~v~~~~~~~~~~g~~--------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 142 NLYIARGGKLGEGMSRA--------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEEEECBCTTSCCCCC--------EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred eEEEEecCcccccCCCc--------EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 999999986 431 2222333332 58999999998 77776
Q ss_pred -------------------CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEe
Q 001245 260 -------------------EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD 320 (1115)
Q Consensus 260 -------------------~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~ 320 (1115)
.+.+|++||+++++...... ...|. ..+..++++
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-----------------~~~~~----------~~~~~~~~s 266 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-----------------GEPKE----------KFLTNLSWS 266 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-----------------CSCTT----------CEEEEEEEC
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-----------------CCCCc----------eeEeeEEEE
Confidence 45789999998765321100 00111 345677888
Q ss_pred CCCCEEEeec-CC-----eEEEEEcCCccEEEEEe-c-CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeee
Q 001245 321 HSRAKVWSAG-FL-----SFALWDARTRELLKVFN-I-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFF 392 (1115)
Q Consensus 321 ~~~~~v~S~s-d~-----tI~lWD~~tg~ll~tl~-~-~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 392 (1115)
+++..|+.++ +. +|.+||+.+|+.++.+. . +...+ .....+.|+
T Consensus 267 pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~----------------------------~~~~~~~~s 318 (706)
T 2z3z_A 267 PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV----------------------------EPLHPLTFL 318 (706)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC----------------------------CCCSCCEEC
T ss_pred CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE----------------------------CccCCceee
Confidence 8888777643 33 79999999995444332 1 11110 001123455
Q ss_pred c--cccceEEeccCc-EEEE--eccc----ccccCCCceEE-EEEcCCCc-EE-EEeCCC----eEEEEcCCCCeeEEee
Q 001245 393 Q--RSRNAIMGAADA-VRRV--AAKG----GFGDDNRRTEA-LTTSIDGM-IW-TGGANG----LLLQWDPNGNRLQDFQ 456 (1115)
Q Consensus 393 ~--~~~~~~~Gs~d~-v~~~--~~~g----~l~~h~~~V~a-Va~S~Dg~-la-SGS~Dg----tIklWD~tG~~l~tl~ 456 (1115)
+ +++.++++..++ +.+| +..+ .+..+...+.. ++++|||. |+ +++.++ .|..||..+..+..+.
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESC
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceecc
Confidence 5 555444444332 3333 2122 23445555665 78999996 54 455554 6777777443355554
Q ss_pred cCCCcEEEEE--ecCCEEEeeecc----cEEEEEeCCCccccccccccCCEEEEEe-cCCEEEeecCCC--ceEEeeecC
Q 001245 457 YLPFAVQCLC--TFGSQIWVGYMN----GIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHG--GIRGWNVTS 527 (1115)
Q Consensus 457 gH~~~V~sla--~dG~~LaSGs~D----GtIrlWD~~G~ll~~l~gH~~~V~sva~-dg~~laSgS~Dg--tIRlWdl~~ 527 (1115)
|...+.+++ +||++|+.++.+ +.|++||+++.. ..+..|...+..... ....+.--+.|+ .+..|-..+
T Consensus 399 -~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P 476 (706)
T 2z3z_A 399 -PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLEAKNPDTGYAMPEIRTGTIMAADGQTPLYYKLTMP 476 (706)
T ss_dssp -CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEECC------CCCCEEEEEEECTTSSSEEEEEEECC
T ss_pred -CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-EeeccccchhhhcCCCCcEEEEEEcCCCCEEEEEEEEeC
Confidence 667788877 789998877544 679999997433 334445444443332 112222223454 677766544
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=187.55 Aligned_cols=290 Identities=9% Similarity=-0.052 Sum_probs=173.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCC---CEEEEEEeCCCc-EEEEeC---------CC
Q 001245 196 CMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRG---PVLSLCISSYGD-LWSGSE---------GG 262 (1115)
Q Consensus 196 ~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~---~V~sVafSpdG~-L~SgS~---------Dg 262 (1115)
.++|+|+|++++++ .|++|++||+.++. ....+.+|.. .|.+++|||||+ |++++. |+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQ--------SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCC--------EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCc--------EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 57899999766655 69999999998742 2344455543 489999999998 777665 79
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCc
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTR 342 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg 342 (1115)
+|++||+++++..... .+ ...+..+++++++..|+.+.+++|++||+.+|
T Consensus 91 ~i~~~d~~~g~~~~~~-----------------~l-------------~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g 140 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGN-----------------EL-------------PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD 140 (719)
T ss_dssp EEEEEETTTTEECCSS-----------------CC-------------CSSBCCEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred EEEEEECCCCccccce-----------------ec-------------CcccccceECCCCCEEEEEECCeEEEEeCCCC
Confidence 9999999887541000 00 02244567889999999888899999999999
Q ss_pred cEEEEEe-cCCc-ee----------------eEEeccCCCCcccc---ccceEEEEe---cCC-CCccceeeeeeccccc
Q 001245 343 ELLKVFN-IDGQ-IE----------------NRVDMSLLPDFAME---DEFKTKIVT---SSK-KDKAQSSFGFFQRSRN 397 (1115)
Q Consensus 343 ~ll~tl~-~~~~-~~----------------~~v~~s~~~~~~~~---~~~~~~~~~---~~~-~~~~~~~v~f~~~~~~ 397 (1115)
++.+... ++.. +. ..+.+||++....- ++..+..+. ... .......+.+...+..
T Consensus 141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 8765331 1111 10 13444443322110 000000000 000 0000000111000000
Q ss_pred eEEeccCcEEEEeccc-c------------cccCCCceEEEEEcCCCcEE-EEeC--C--CeEEEEc----C-CCCeeEE
Q 001245 398 AIMGAADAVRRVAAKG-G------------FGDDNRRTEALTTSIDGMIW-TGGA--N--GLLLQWD----P-NGNRLQD 454 (1115)
Q Consensus 398 ~~~Gs~d~v~~~~~~g-~------------l~~h~~~V~aVa~S~Dg~la-SGS~--D--gtIklWD----~-tG~~l~t 454 (1115)
.....+..|+..+ . +.+|...+..+++|||++++ +... + ..|.+|| + +|++...
T Consensus 221 ---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 221 ---NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp ---CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred ---CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 0011355555432 1 22466778999999999854 4332 2 2488999 8 6777666
Q ss_pred e----ecCCCcEE-----EEE--ecCCEEEe--eeccc--EEEEEeCCCccccccccccCCEEEEE-ecCCEEEeecC--
Q 001245 455 F----QYLPFAVQ-----CLC--TFGSQIWV--GYMNG--IVQVLDLEGNLLGGWVAHSSPVIKMA-VGAGYIFTLAN-- 516 (1115)
Q Consensus 455 l----~gH~~~V~-----sla--~dG~~LaS--Gs~DG--tIrlWD~~G~ll~~l~gH~~~V~sva-~dg~~laSgS~-- 516 (1115)
+ .+|...|. +++ +||+.|+. +..+| .|.+||+++.....+..+...|..+. .+++.|+..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~~~~~~ 377 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEF 377 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEEEESCG
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEEEEecC
Confidence 6 46777665 444 79996654 33444 78888987555667777776777654 37777765554
Q ss_pred ---CCceEEeeecC
Q 001245 517 ---HGGIRGWNVTS 527 (1115)
Q Consensus 517 ---DgtIRlWdl~~ 527 (1115)
++++++|.+..
T Consensus 378 ~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 378 EEYPGRRNIYRISI 391 (719)
T ss_dssp GGCTTCBEEEEEEC
T ss_pred CCCCceEEEEEEeC
Confidence 48999999875
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.61 E-value=1.8e-14 Score=170.03 Aligned_cols=209 Identities=16% Similarity=0.061 Sum_probs=139.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC---CCCCCCcc----eEEeecCCCCEEEEEEeCCCc-EE----EEeC
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL---DSDDGFGE----VLSWQAHRGPVLSLCISSYGD-LW----SGSE 260 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~---~~~~~~~~----~~~l~GH~~~V~sVafSpdG~-L~----SgS~ 260 (1115)
.+.++++++++++|++|+.|+ |++|+...-.. ........ ......|.+.|++|+|+|+|+ |+ ||+.
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 456899999999999999998 99988531000 00000000 001124678899999999998 67 8999
Q ss_pred CCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCC-CCEEEeec-CCeEEEEE
Q 001245 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHS-RAKVWSAG-FLSFALWD 338 (1115)
Q Consensus 261 DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~-~~~v~S~s-d~tI~lWD 338 (1115)
|++|+|||+.+..... ......+. ....+.+|. ..+.+++++++ +..+++++ |++|+|||
T Consensus 117 d~~v~iwd~~~~~~~~--~~~~~~~~------~~~~~~~h~----------~~V~~v~~~p~~~~~las~s~Dg~v~iwD 178 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEA--KQQKRPFA------YHKLLKDAG----------GMVIDMKWNPTVPSMVAVCLADGSIAVLQ 178 (434)
T ss_dssp EEEEEEEEHHHHHCTT--CSSCCCSE------EEECCCSGG----------GSEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred CceEEEEEccccccCC--cCCcceee------eeeccCCCC----------CceEEEEECCCCCCEEEEEECCCeEEEEE
Confidence 9999999987641000 00000000 011223454 67889999887 67788765 78999999
Q ss_pred cCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccC
Q 001245 339 ARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDD 418 (1115)
Q Consensus 339 ~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h 418 (1115)
++++..+... .+|
T Consensus 179 ~~~~~~~~~~-------------------------------------------------------------------~~~ 191 (434)
T 2oit_A 179 VTETVKVCAT-------------------------------------------------------------------LPS 191 (434)
T ss_dssp ESSSEEEEEE-------------------------------------------------------------------ECG
T ss_pred cCCCcceeec-------------------------------------------------------------------cCC
Confidence 9877433211 123
Q ss_pred CCceEEEEEcCCCc-EEEEeCCCeEEEEcCCCCeeEEeecCC-------CcEEEEEe--cCCEEEee-eccc------EE
Q 001245 419 NRRTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQDFQYLP-------FAVQCLCT--FGSQIWVG-YMNG------IV 481 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l~tl~gH~-------~~V~sla~--dG~~LaSG-s~DG------tI 481 (1115)
...|.+++++|+|. |++|+.||+|++||+.|+...++..|. ..|.++++ ++.++++. +.|| .+
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 34678899999987 899999999999999888777776543 37888884 45565443 3343 48
Q ss_pred EEEeCC
Q 001245 482 QVLDLE 487 (1115)
Q Consensus 482 rlWD~~ 487 (1115)
++||+.
T Consensus 272 ~i~~l~ 277 (434)
T 2oit_A 272 VMALLP 277 (434)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999986
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.60 E-value=3.8e-14 Score=158.32 Aligned_cols=263 Identities=10% Similarity=-0.002 Sum_probs=152.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC-CCEEEEEEeCCCc-E-EEEeCCCcEEEEeCCCcc
Q 001245 197 MVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGD-L-WSGSEGGGIKIWPWEAIE 273 (1115)
Q Consensus 197 la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~-~~V~sVafSpdG~-L-~SgS~DgtIrvWdl~t~~ 273 (1115)
+++++++.++++++.|++|++||+.++ +...++..+. ..+..++|+|+|+ + ++++.+++|.+||+++++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASD--------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTT--------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCC--------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 467788999999999999999999863 3344555443 2578999999997 5 466789999999998865
Q ss_pred eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-------------CCeEEEEEcC
Q 001245 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------------FLSFALWDAR 340 (1115)
Q Consensus 274 ~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-------------d~tI~lWD~~ 340 (1115)
....+. + .+. .... ...+..+++++++..++.+. .+.|.+||+.
T Consensus 77 ~~~~~~-----------------~-~~~--~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 77 NTFHAN-----------------L-SSV--PGEV---GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp EEEEEE-----------------S-CCS--TTEE---EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred EEEEEE-----------------c-ccc--cccc---cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC
Confidence 432110 0 000 0000 01133566777777777665 3789999998
Q ss_pred CccEE---EEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-cccc
Q 001245 341 TRELL---KVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFG 416 (1115)
Q Consensus 341 tg~ll---~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g~l~ 416 (1115)
+++.. ..+..... ...+.|+++++ ++.+.. .+..|+.. +...
T Consensus 134 ~~~~~~~~~~~~~~~~--------------------------------~~~~~~s~dg~-l~~~~~-~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 134 DGLEAKPVRTFPMPRQ--------------------------------VYLMRAADDGS-LYVAGP-DIYKMDVKTGKYT 179 (349)
T ss_dssp GGGGBCCSEEEECCSS--------------------------------CCCEEECTTSC-EEEESS-SEEEECTTTCCEE
T ss_pred CccccceeeeccCCCc--------------------------------ccceeECCCCc-EEEccC-cEEEEeCCCCcee
Confidence 86532 22221111 11234555555 333322 25555542 2111
Q ss_pred ----cCC-C-----------------------ceEEEEEcCCCcE--EEEeCCCeEEEEcC-CCCe-eEEeecCCCcEEE
Q 001245 417 ----DDN-R-----------------------RTEALTTSIDGMI--WTGGANGLLLQWDP-NGNR-LQDFQYLPFAVQC 464 (1115)
Q Consensus 417 ----~h~-~-----------------------~V~aVa~S~Dg~l--aSGS~DgtIklWD~-tG~~-l~tl~gH~~~V~s 464 (1115)
.+. . ....+++++|+.. ........+..+|. +++. ...+..+...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 111 0 2233445544310 00000111222444 3321 1122334455666
Q ss_pred EE--e-cCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEE--ecCCEEEeecCCCceEEeeecC
Q 001245 465 LC--T-FGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 465 la--~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
++ + ||++|+++ ++.|.+||++ ++.+..+..+ ..+.+++ .||++|++++.+++|++||+.+
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence 66 8 99999999 8899999987 7766666533 2355666 4788888888999999999765
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.59 E-value=1.9e-13 Score=155.92 Aligned_cols=266 Identities=11% Similarity=0.049 Sum_probs=157.4
Q ss_pred EEEcCCCCEEEEEeC-CCe--EEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCc
Q 001245 197 MVGDEASGVVWSGHR-DGR--IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 197 la~s~dg~~LaSGS~-Dgt--IrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~ 272 (1115)
.+|+|||+.|+.++. ||+ |.+||++++ +......+|...+.+++|||||+ |+.++.|++|++||++++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 689999999999988 774 778888763 22333456766666789999998 888999999999999987
Q ss_pred ceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe----------------------e-
Q 001245 273 EKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS----------------------A- 329 (1115)
Q Consensus 273 ~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S----------------------~- 329 (1115)
+............ .. .....++++..++. .
T Consensus 113 ~~~~~~~~~~~~~------------------~~---------~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 113 EENVVYQVPAEWV------------------GY---------GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp CEEEEEECCTTEE------------------EE---------EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred cceeeeechhhcc------------------cc---------cceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 6432111110000 00 00112333443331 1
Q ss_pred cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec-------
Q 001245 330 GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA------- 402 (1115)
Q Consensus 330 sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs------- 402 (1115)
.+..|.+||+.+|+......... .+..+.++|. +++.++...
T Consensus 166 ~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~------------------------------dg~~l~~~~~~~~~~~ 214 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPY------------------------------DDSTVAFCHEGPHDLV 214 (388)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS-CEEEEEEETT------------------------------EEEEEEEEECSCTTTS
T ss_pred CcceEEEEECCCCceEEeecCCc-cccccEECCC------------------------------CCCEEEEEEecCCCCC
Confidence 12568999999998765543332 2234444440 222111111
Q ss_pred cCcEEEEeccc----ccccCC--CceEEEEEcCCCc-EEEEeC-C----CeEEEEcC-CCCe--eEEeecCCCcE-----
Q 001245 403 ADAVRRVAAKG----GFGDDN--RRTEALTTSIDGM-IWTGGA-N----GLLLQWDP-NGNR--LQDFQYLPFAV----- 462 (1115)
Q Consensus 403 ~d~v~~~~~~g----~l~~h~--~~V~aVa~S~Dg~-laSGS~-D----gtIklWD~-tG~~--l~tl~gH~~~V----- 462 (1115)
...+..++..+ .+..+. ..+..+++||||+ |+..+. + ..|.+||+ +|+. +..+.++....
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 215 DARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp SCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred cceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 11233343321 122222 2466788999997 654333 2 24999999 6663 33343311111
Q ss_pred EEEEecCCEEEee---------ecccEEEEEeCCCccccccccccC-----------CEEEEE--ecCCEEEeec-CCCc
Q 001245 463 QCLCTFGSQIWVG---------YMNGIVQVLDLEGNLLGGWVAHSS-----------PVIKMA--VGAGYIFTLA-NHGG 519 (1115)
Q Consensus 463 ~sla~dG~~LaSG---------s~DGtIrlWD~~G~ll~~l~gH~~-----------~V~sva--~dg~~laSgS-~Dgt 519 (1115)
..+.|||++|+.. ..+..|.+||+++..+..+..|.. .+.+++ +||++|+.+| .++.
T Consensus 295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~ 374 (388)
T 3pe7_A 295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGK 374 (388)
T ss_dssp SEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSS
T ss_pred CeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCc
Confidence 1456999988854 456799999998655667777766 456555 5898877554 6888
Q ss_pred eEEeeecCC
Q 001245 520 IRGWNVTSP 528 (1115)
Q Consensus 520 IRlWdl~~p 528 (1115)
..||.+..+
T Consensus 375 ~~l~~~~l~ 383 (388)
T 3pe7_A 375 PALYLATLP 383 (388)
T ss_dssp CEEEEEECC
T ss_pred eeEEEEECC
Confidence 999987653
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.59 E-value=9e-15 Score=172.61 Aligned_cols=229 Identities=14% Similarity=0.077 Sum_probs=149.8
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEee
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVE 291 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~ 291 (1115)
++||+|+... . .+...++.|++++++. |++|+.|+ |++|+............+.......
T Consensus 23 ~~vri~~~~~---------~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~--- 83 (434)
T 2oit_A 23 KKVRIFDSPE---------E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDK--- 83 (434)
T ss_dssp CEEECSCCCS---------S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEEC---
T ss_pred eeEEecCCcc---------c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccccc---
Confidence 5789987532 0 1334678999999876 67888887 9999874321110000000000000
Q ss_pred eeeeeecccceecceeeeecCCeEEEEEeCCCCEEE----eec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCc
Q 001245 292 RSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW----SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDF 366 (1115)
Q Consensus 292 ~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~----S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~ 366 (1115)
. ..........+.++++++++..|+ +++ |++|+|||+.++.. +..+.
T Consensus 84 ---------~--~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~-----~~~~~------------ 135 (434)
T 2oit_A 84 ---------V--QGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN-----EAKQQ------------ 135 (434)
T ss_dssp ---------C--CCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHC-----TTCSS------------
T ss_pred ---------C--ccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccccc-----CCcCC------------
Confidence 0 000011125688999999999988 665 68999999865410 00000
Q ss_pred cccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC-Cc-EEEEeCCCeEEE
Q 001245 367 AMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID-GM-IWTGGANGLLLQ 444 (1115)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D-g~-laSGS~DgtIkl 444 (1115)
.+. + .....+.+|...|.+++++|+ +. +++|+.||+|++
T Consensus 136 ----------------~~~---~--------------------~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i 176 (434)
T 2oit_A 136 ----------------KRP---F--------------------AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV 176 (434)
T ss_dssp ----------------CCC---S--------------------EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred ----------------cce---e--------------------eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence 000 0 000114467788999999997 55 799999999999
Q ss_pred EcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccc-------cCCEEEEEec--CCEEE
Q 001245 445 WDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAH-------SSPVIKMAVG--AGYIF 512 (1115)
Q Consensus 445 WD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH-------~~~V~sva~d--g~~la 512 (1115)
||+ ++.++....+|...|++++ ++|++|++|+.||+|++||++++....+..| ...|.++.++ +.+++
T Consensus 177 wD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 177 LQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred EEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 999 7777777788999999999 6899999999999999999987665555544 3378888864 44554
Q ss_pred e-ecCCCc------eEEeeecC
Q 001245 513 T-LANHGG------IRGWNVTS 527 (1115)
Q Consensus 513 S-gS~Dgt------IRlWdl~~ 527 (1115)
+ .+.||. +++|++..
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEETTCCSSSCCEEEEEECCC
T ss_pred EEccCCCccCCCCceEEEEecc
Confidence 3 334433 88999875
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=1.2e-12 Score=143.62 Aligned_cols=236 Identities=8% Similarity=0.103 Sum_probs=164.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee------cCCCCEEEEEE-eCCCcEEEEe-C-C
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ------AHRGPVLSLCI-SSYGDLWSGS-E-G 261 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~------GH~~~V~sVaf-SpdG~L~SgS-~-D 261 (1115)
...+.+++++++|.++++.+.++.|++||.++ +....+. +|...+.+|++ .++|.|+.+. . +
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 45678999999999999999999999999875 2233342 45567999999 4788876444 3 8
Q ss_pred CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcC
Q 001245 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR 340 (1115)
Q Consensus 262 gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~ 340 (1115)
+.|++||.+ ++....+ .. .+ ......+++++++..+++.. ++.|.+||.
T Consensus 100 ~~i~~~d~~-g~~~~~~-----------------~~-~~----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 149 (286)
T 1q7f_A 100 HQIQIYNQY-GQFVRKF-----------------GA-TI----------LQHPRGVTVDNKGRIIVVECKVMRVIIFDQ- 149 (286)
T ss_dssp CEEEEECTT-SCEEEEE-----------------CT-TT----------CSCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred CEEEEECCC-CcEEEEe-----------------cC-cc----------CCCceEEEEeCCCCEEEEECCCCEEEEEcC-
Confidence 999999953 3322110 00 00 12356778888776555543 467899985
Q ss_pred CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCC
Q 001245 341 TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNR 420 (1115)
Q Consensus 341 tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~ 420 (1115)
+|+.+..+... .+..
T Consensus 150 ~g~~~~~~~~~-----------------------------------------------------------------~~~~ 164 (286)
T 1q7f_A 150 NGNVLHKFGCS-----------------------------------------------------------------KHLE 164 (286)
T ss_dssp TSCEEEEEECT-----------------------------------------------------------------TTCS
T ss_pred CCCEEEEeCCC-----------------------------------------------------------------CccC
Confidence 34444333100 1112
Q ss_pred ceEEEEEcCCCcEE-EEeCCCeEEEEcCCCCeeEEeecC--CCcEEEEE--ecCCEEEeeeccc-EEEEEeCCCcccccc
Q 001245 421 RTEALTTSIDGMIW-TGGANGLLLQWDPNGNRLQDFQYL--PFAVQCLC--TFGSQIWVGYMNG-IVQVLDLEGNLLGGW 494 (1115)
Q Consensus 421 ~V~aVa~S~Dg~la-SGS~DgtIklWD~tG~~l~tl~gH--~~~V~sla--~dG~~LaSGs~DG-tIrlWD~~G~ll~~l 494 (1115)
.+..++++++|.++ +.+.++.|++||.+|+.+.++..+ ...+..|+ ++|.++++...++ .|++||.+|+.+..+
T Consensus 165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 165 FPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL 244 (286)
T ss_dssp SEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred CcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 35678899999865 556689999999999988888654 35688888 5788888877776 999999989888888
Q ss_pred ccccC--CEEEEEe--cCCEEEeecCCCceEEeeecCCCCC
Q 001245 495 VAHSS--PVIKMAV--GAGYIFTLANHGGIRGWNVTSPGPL 531 (1115)
Q Consensus 495 ~gH~~--~V~sva~--dg~~laSgS~DgtIRlWdl~~p~pl 531 (1115)
..|.. .+.++++ +|+++++ +.|++|++|++....|+
T Consensus 245 ~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~pv 284 (286)
T 1q7f_A 245 ESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAPV 284 (286)
T ss_dssp EESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred cccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccccc
Confidence 77654 3667775 6776666 57999999998765553
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.58 E-value=5.4e-13 Score=151.37 Aligned_cols=254 Identities=9% Similarity=0.096 Sum_probs=155.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe-CCCcE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRD----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS-EGGGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~D----gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS-~DgtI 264 (1115)
...+..++|+|+|++|++++.| +.|++|+++.... ....+.....+......+++ +|+ |++++ .|++|
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g----~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG----TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT----EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC----cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 4566779999999999999987 8999999875210 01223334446667788888 676 66554 68999
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCc
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTR 342 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg 342 (1115)
.+|++.+........ . .....+.... ........+.++++++++..++.+. ++.|.+|++...
T Consensus 123 ~~~~~~~~g~~~~~~----~---------~~~~~g~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 123 TVFPIGQDGALLPAS----D---------VIEFKGSGPD--KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp EEEEBCTTSCBCSCS----E---------EEECCCCCSC--TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEEeCCCCcCcccc----e---------eEEccCCCCC--ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 999997532221100 0 0000000000 0000113356788899988665543 578999987543
Q ss_pred cE------EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccc
Q 001245 343 EL------LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFG 416 (1115)
Q Consensus 343 ~l------l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~ 416 (1115)
.. +... +.. ... ..
T Consensus 188 ~~~~~~~~l~~~---~~~----------------------------------------------------~~~-----~~ 207 (361)
T 3scy_A 188 ANADNKEKFLTK---GTP----------------------------------------------------EAF-----KV 207 (361)
T ss_dssp CCTTTCCCCEEE---EEE----------------------------------------------------EEE-----EC
T ss_pred CCcccccceeec---ccc----------------------------------------------------cce-----ec
Confidence 21 1000 000 000 00
Q ss_pred cCCCceEEEEEcCCCc-EEEEe-CCCeEEEEcC-CCCe--eEEeec---CCCcEEEEE--ecCCEEEeeec--ccEEEEE
Q 001245 417 DDNRRTEALTTSIDGM-IWTGG-ANGLLLQWDP-NGNR--LQDFQY---LPFAVQCLC--TFGSQIWVGYM--NGIVQVL 484 (1115)
Q Consensus 417 ~h~~~V~aVa~S~Dg~-laSGS-~DgtIklWD~-tG~~--l~tl~g---H~~~V~sla--~dG~~LaSGs~--DGtIrlW 484 (1115)
.....+..++|+|||+ +++++ .+++|.+||+ +|++ ++.+.. |.....+++ +||++|+++.. +++|.+|
T Consensus 208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 1112355789999997 66655 6899999999 6654 343332 334466776 79999977765 4899999
Q ss_pred eCC---Cc--cccccccccCCEEEEEe--cCCEEEeec-CCCceEEeeec
Q 001245 485 DLE---GN--LLGGWVAHSSPVIKMAV--GAGYIFTLA-NHGGIRGWNVT 526 (1115)
Q Consensus 485 D~~---G~--ll~~l~gH~~~V~sva~--dg~~laSgS-~DgtIRlWdl~ 526 (1115)
+++ |+ .+..+.. ...+.++++ ||++|++++ .+++|++|.+.
T Consensus 288 ~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 974 44 3444443 345666764 788888776 77999998765
No 166
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.55 E-value=9.6e-13 Score=148.29 Aligned_cols=237 Identities=13% Similarity=0.067 Sum_probs=149.1
Q ss_pred CCeEEEe----CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe-CCCeEE
Q 001245 142 EEQLWAG----GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH-RDGRIM 216 (1115)
Q Consensus 142 ~~~l~ag----~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS-~DgtIr 216 (1115)
+++|+++ .++.|++||++++..... .....+ ...+..++|+|+|++|++++ .|++|+
T Consensus 50 dg~l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~~~~-~~~p~~~a~spdg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 50 KDCLYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTVVAP-GTPPAYVAVDEARQLVYSANYHKGTAE 111 (347)
T ss_dssp TCEEEEEEEETTEEEEEEEEEETTEEEEE-----------------EEEEEE-SCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred CCeEEEEEecCCCceEEEEEecCCcEEEe-----------------eeeecC-CCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence 4456653 257999999976653221 010123 45677899999999999888 789999
Q ss_pred EEECCCCCCCCCCCCcceEEeec---------CCCCEEEEEEeCCCcE-EEEeCCCcEEEEeCC-CcceeeccCCCccee
Q 001245 217 CWKMNARLLDSDDGFGEVLSWQA---------HRGPVLSLCISSYGDL-WSGSEGGGIKIWPWE-AIEKALSLKPEERHT 285 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l~G---------H~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~-t~~~~l~~~~~~~~~ 285 (1115)
+|++.... . ...+..+.. +...+.+++|+|||+| +++..+++|++|+++ +++... .
T Consensus 112 v~~~~~~g----~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~--------~ 178 (347)
T 3hfq_A 112 VMKIAADG----A-LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE--------Q 178 (347)
T ss_dssp EEEECTTS----C-EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE--------E
T ss_pred EEEeCCCC----C-eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE--------e
Confidence 99996310 0 122222221 1234899999999995 466678999999997 332210 0
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCC--ccEEEEEecCCceeeEEecc
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDART--RELLKVFNIDGQIENRVDMS 361 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~t--g~ll~tl~~~~~~~~~v~~s 361 (1115)
. .+..+ .......+++++++..++.+. ++.|.+||+.. |++.....
T Consensus 179 ~---------~~~~~---------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~------------ 228 (347)
T 3hfq_A 179 S---------VLTME---------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI------------ 228 (347)
T ss_dssp E---------EEECC---------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE------------
T ss_pred e---------eEEcC---------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee------------
Confidence 0 00000 012345688899888666543 57899999763 44321100
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-E-EEEeCC
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-I-WTGGAN 439 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-l-aSGS~D 439 (1115)
.... + ..+ .....+..++++|||+ | +++..+
T Consensus 229 ---------------~~~~------------~-------------------~~~-~~~~~~~~i~~spdG~~l~v~~~~~ 261 (347)
T 3hfq_A 229 ---------------VKTI------------P-------------------ADY-TAHNGAAAIRLSHDGHFLYVSNRGY 261 (347)
T ss_dssp ---------------EESS------------C-------------------TTC-CSCCEEEEEEECTTSCEEEEEEETT
T ss_pred ---------------eeec------------C-------------------CCC-CCCCcceeEEECCCCCEEEEEeCCC
Confidence 0000 0 000 0112466789999997 5 466679
Q ss_pred CeEEEEcCC--C--CeeEEeecCCCcEEEEE--ecCCEEEeeec-ccEEEEEeC
Q 001245 440 GLLLQWDPN--G--NRLQDFQYLPFAVQCLC--TFGSQIWVGYM-NGIVQVLDL 486 (1115)
Q Consensus 440 gtIklWD~t--G--~~l~tl~gH~~~V~sla--~dG~~LaSGs~-DGtIrlWD~ 486 (1115)
++|.+||++ | +.+..+..|...+.+++ +||++|++++. +++|.+|++
T Consensus 262 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 262 NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 999999983 4 45666777666677777 78999998876 499999954
No 167
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.54 E-value=4.4e-13 Score=148.98 Aligned_cols=220 Identities=12% Similarity=0.158 Sum_probs=141.8
Q ss_pred CEEEEEeCCCeEEEEECCC-CCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCC-CcEEEEeCC--Ccceeecc
Q 001245 204 GVVWSGHRDGRIMCWKMNA-RLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG-GGIKIWPWE--AIEKALSL 278 (1115)
Q Consensus 204 ~~LaSGS~DgtIrlWdl~~-~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~D-gtIrvWdl~--t~~~~l~~ 278 (1115)
.++++++.|++|++|+++. +. .. ......|...+.+++|+|+|+ |++++.+ ++|++|+++ ++....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-- 76 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGA------LT-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-- 76 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSC------EE-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--
T ss_pred EEEEeCCCCCeEEEEEECCCCc------EE-EeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--
Confidence 3455668899999999963 11 11 223346888899999999998 7777766 999999997 332210
Q ss_pred CCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCcc---EEEEEecCCc
Q 001245 279 KPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRE---LLKVFNIDGQ 353 (1115)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~---ll~tl~~~~~ 353 (1115)
+. .+..+ ..+..+++++++..++.++ ++.|.+||+.+|. .+..+.
T Consensus 77 ------~~---------~~~~~-----------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---- 126 (343)
T 1ri6_A 77 ------AA---------ESALP-----------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE---- 126 (343)
T ss_dssp ------EE---------EEECS-----------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC----
T ss_pred ------cc---------ccccC-----------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc----
Confidence 00 00000 1345677888888776554 5789999984332 111110
Q ss_pred eeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-
Q 001245 354 IENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM- 432 (1115)
Q Consensus 354 ~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~- 432 (1115)
....+.+++++|||.
T Consensus 127 ----------------------------------------------------------------~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 127 ----------------------------------------------------------------GLDGCHSANISPDNRT 142 (343)
T ss_dssp ----------------------------------------------------------------CCTTBCCCEECTTSSE
T ss_pred ----------------------------------------------------------------CCCCceEEEECCCCCE
Confidence 001245577889986
Q ss_pred EEEEe-CCCeEEEEcC-C-CCeeE----EeecC-CCcEEEEE--ecCCEEEeee-cccEEEEEeCC---Ccc--ccccc-
Q 001245 433 IWTGG-ANGLLLQWDP-N-GNRLQ----DFQYL-PFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE---GNL--LGGWV- 495 (1115)
Q Consensus 433 laSGS-~DgtIklWD~-t-G~~l~----tl~gH-~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~---G~l--l~~l~- 495 (1115)
+++++ .|++|++||+ + |+... .+..+ ...+.+++ ++|++|++++ .+++|++||++ |++ +....
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence 66666 8999999999 4 65432 23333 34677777 7899776555 89999999984 332 22221
Q ss_pred ---cc--cCCEEEEEe--cCCEEE-eecCCCceEEeeec
Q 001245 496 ---AH--SSPVIKMAV--GAGYIF-TLANHGGIRGWNVT 526 (1115)
Q Consensus 496 ---gH--~~~V~sva~--dg~~la-SgS~DgtIRlWdl~ 526 (1115)
+| ...+.++++ +|++|+ +++.|+.|++|++.
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred cCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 22 234556664 687776 66789999999986
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.50 E-value=4.2e-12 Score=143.37 Aligned_cols=251 Identities=11% Similarity=0.034 Sum_probs=172.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRD------------------------GRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVL 245 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~D------------------------gtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~ 245 (1115)
.+.|.+|+++++|+++++++.+ ++|.+||.+++. ....+ .++.....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~p~ 94 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--------ILQSSGKNLFYLPH 94 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--------EEEEECTTTCSSEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--------EEeccCCCccCCce
Confidence 5679999999999999999988 579999987632 23333 25667899
Q ss_pred EEEEeCCCcE-EEEeCCCcEEEEeCCCcc-eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeC-C
Q 001245 246 SLCISSYGDL-WSGSEGGGIKIWPWEAIE-KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDH-S 322 (1115)
Q Consensus 246 sVafSpdG~L-~SgS~DgtIrvWdl~t~~-~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~-~ 322 (1115)
.|+|+++|.| ++.+.+++|++||.++.. ....+.. .+. .+.....-.....+++++ +
T Consensus 95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~-----------------~~~---~g~~~~~~~~P~~ia~~~~~ 154 (329)
T 3fvz_A 95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGR-----------------SMQ---PGSDQNHFCQPTDVAVEPST 154 (329)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESB-----------------TTB---CCCSTTCCSSEEEEEECTTT
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecc-----------------cCC---CCCCccccCCCcEEEEeCCC
Confidence 9999999996 577788999999986542 1111100 000 000000012356788888 6
Q ss_pred CCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEE
Q 001245 323 RAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM 400 (1115)
Q Consensus 323 ~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~ 400 (1115)
+..+++.+ +..|++|| .+|+.+.++...+.- .
T Consensus 155 g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~----------~----------------------------------- 188 (329)
T 3fvz_A 155 GAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSG----------S----------------------------------- 188 (329)
T ss_dssp CCEEEEECSSCCEEEEEC-TTSCEEEEECEECCS----------S-----------------------------------
T ss_pred CeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCC----------C-----------------------------------
Confidence 66666653 57899999 677777665321100 0
Q ss_pred eccCcEEEEecccccccCCCceEEEEEcCC-CcE-EEEeCCCeEEEEcC-CCCeeEEee--cCCCcEEEEE--e------
Q 001245 401 GAADAVRRVAAKGGFGDDNRRTEALTTSID-GMI-WTGGANGLLLQWDP-NGNRLQDFQ--YLPFAVQCLC--T------ 467 (1115)
Q Consensus 401 Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D-g~l-aSGS~DgtIklWD~-tG~~l~tl~--gH~~~V~sla--~------ 467 (1115)
....++......|+++++ |.| ++.+.++.|++||. +|+++.++. .+...+.+++ |
T Consensus 189 ------------~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 189 ------------SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp ------------SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred ------------CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 000011234567889998 776 56677899999999 599999884 3555677766 3
Q ss_pred cCCEEEeeecccEEEEEeCC-Ccccccc---ccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 468 FGSQIWVGYMNGIVQVLDLE-GNLLGGW---VAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 468 dG~~LaSGs~DGtIrlWD~~-G~ll~~l---~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
+|...++.+.+.+|++||.. |+++..+ .+|...+.+|++ +|..+++.+.+++|++|++..
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 45555555566799999975 8888877 478888999986 677788889999999999864
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.48 E-value=1.3e-12 Score=149.45 Aligned_cols=238 Identities=8% Similarity=0.030 Sum_probs=151.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCCCCCCCCCcceEEe--ecCCCCEEEEEEeCCCc--E-EEEe------
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMN-ARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGD--L-WSGS------ 259 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~-~~~~~~~~~~~~~~~l--~GH~~~V~sVafSpdG~--L-~SgS------ 259 (1115)
..+..++++|+|++|++++.+ +|++|+++ ++ +..... ..+ +.+.+++|+|||+ + ++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--------~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~ 109 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--------EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAV 109 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--------EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCE
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCC--------CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCccee
Confidence 356689999999999999998 99999986 42 112111 111 3356799999998 3 4553
Q ss_pred -------CCCcEEEEeCCC-cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-
Q 001245 260 -------EGGGIKIWPWEA-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG- 330 (1115)
Q Consensus 260 -------~DgtIrvWdl~t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s- 330 (1115)
.++++++|+++. ++.... +....+. ....+..+++++++..++.+.
T Consensus 110 ~~~~~~~~~g~v~v~~~~~~g~~~~~-----------------~~~~~~~--------~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 110 YANPFYKFAGYGNVFSVSETGKLEKN-----------------VQNYEYQ--------ENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp EEEEESSSCCEEEEEEECTTCCEEEE-----------------EEEEECC--------TTCCEEEEEECTTSSEEEEEET
T ss_pred ccceeecCCceEEEEccCCCCcCcce-----------------EeeEEeC--------CCCcceEEEECCCCCEEEEEcC
Confidence 799999999964 332100 0000000 013466788899888777653
Q ss_pred -CCeEEEEEcC-CccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEE
Q 001245 331 -FLSFALWDAR-TRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (1115)
Q Consensus 331 -d~tI~lWD~~-tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~ 408 (1115)
++.|++||+. +|++...-. . .
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~----~-----------------------~------------------------------ 187 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGS----V-----------------------D------------------------------ 187 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEE----E-----------------------E------------------------------
T ss_pred CCCEEEEEEECCCCCEEEeee----E-----------------------e------------------------------
Confidence 5789999987 676432100 0 0
Q ss_pred EecccccccCCCceEEEEEcCCCc-EEEEeC-CCeEEEEcC---CCCee---EEee-------cCCC------cEEEEE-
Q 001245 409 VAAKGGFGDDNRRTEALTTSIDGM-IWTGGA-NGLLLQWDP---NGNRL---QDFQ-------YLPF------AVQCLC- 466 (1115)
Q Consensus 409 ~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~-DgtIklWD~---tG~~l---~tl~-------gH~~------~V~sla- 466 (1115)
+..+...+..++++|||+ +++++. +++|.+|+. +|++. +.+. +|.. .+.+++
T Consensus 188 ------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 188 ------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp ------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred ------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 000112356788999997 666664 789999975 46653 2222 2232 466666
Q ss_pred --ecCCEEEeeeccc------EEEEEeCC--Ccccc---ccccccCCEEE--EEe---cCCEEEeecCC-CceEEeeecC
Q 001245 467 --TFGSQIWVGYMNG------IVQVLDLE--GNLLG---GWVAHSSPVIK--MAV---GAGYIFTLANH-GGIRGWNVTS 527 (1115)
Q Consensus 467 --~dG~~LaSGs~DG------tIrlWD~~--G~ll~---~l~gH~~~V~s--va~---dg~~laSgS~D-gtIRlWdl~~ 527 (1115)
|||++|++++.+. +|++|+++ |++.. ....|...+.. +.+ ||++|++++.+ ++|++|++..
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 7899998877533 89999974 65433 13234333333 456 79999988764 9999999864
No 170
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.47 E-value=1.7e-13 Score=166.58 Aligned_cols=102 Identities=11% Similarity=-0.090 Sum_probs=83.9
Q ss_pred EEEEEcCCCc-EEEEeCC----CeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeeccc--EEEEEeCC-Ccccc
Q 001245 423 EALTTSIDGM-IWTGGAN----GLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNG--IVQVLDLE-GNLLG 492 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~D----gtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DG--tIrlWD~~-G~ll~ 492 (1115)
.++++||||+ |++++.| ++|++||+++..++.+..|...+.+++ |||++||++..+| +|++||++ |++.
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~- 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE- 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-
Confidence 6788999998 6777777 789999994434557888988898888 7999999888888 99999998 5555
Q ss_pred ccccccCCEEEEE----------ecCCEEEeecCCCceEEeee
Q 001245 493 GWVAHSSPVIKMA----------VGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 493 ~l~gH~~~V~sva----------~dg~~laSgS~DgtIRlWdl 525 (1115)
.+.+|...|.+++ +||+.+++++.|+++++|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 232 DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7778876665433 58888999999999999997
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.43 E-value=1.8e-12 Score=162.81 Aligned_cols=292 Identities=7% Similarity=-0.056 Sum_probs=173.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCC-----EEEEEEeCCCc-EEEEeCC-----
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-----VLSLCISSYGD-LWSGSEG----- 261 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~-----V~sVafSpdG~-L~SgS~D----- 261 (1115)
...+++|+|||++|+++ ||+|++||+.++. +...+.+|... ..+++|||||+ |++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGN--------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCC--------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCc--------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 34578999999999997 9999999998743 34456777543 34588999998 7777776
Q ss_pred ----CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEE
Q 001245 262 ----GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALW 337 (1115)
Q Consensus 262 ----gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lW 337 (1115)
+.+.+||+++++... +..+. ..+...+++|++..|+.+.+..|.+|
T Consensus 88 ~~~~~~~~~~d~~~~~~~~--------------------l~~~~----------~~~~~~~~SPdG~~la~~~~~~i~~~ 137 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLIT--------------------EERIP----------NNTQWVTWSPVGHKLAYVWNNDIYVK 137 (740)
T ss_dssp SCEEEEEEEEETTTTEECC--------------------SSCCC----------TTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred EccceEEEEEECCCCcEEE--------------------cccCC----------CcceeeEECCCCCEEEEEECCeEEEE
Confidence 455699999875431 11111 34667788999999998889999999
Q ss_pred EcCCccEEEEEe-cCCc-ee----------------eEEeccCCCCccc---cccceEEEEec--CCCC----ccceeee
Q 001245 338 DARTRELLKVFN-IDGQ-IE----------------NRVDMSLLPDFAM---EDEFKTKIVTS--SKKD----KAQSSFG 390 (1115)
Q Consensus 338 D~~tg~ll~tl~-~~~~-~~----------------~~v~~s~~~~~~~---~~~~~~~~~~~--~~~~----~~~~~v~ 390 (1115)
|+.+|+..+... ++.. +. ..+.+||++.... .++..+..+.- .... .....+.
T Consensus 138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 999998655321 1111 11 1245666554321 11111111110 0000 0001112
Q ss_pred eeccccceEEeccCcEEEEeccc---c-------c------ccCCCceEEEEEcCCCc-EEEEe----CCCeEEEEcC-C
Q 001245 391 FFQRSRNAIMGAADAVRRVAAKG---G-------F------GDDNRRTEALTTSIDGM-IWTGG----ANGLLLQWDP-N 448 (1115)
Q Consensus 391 f~~~~~~~~~Gs~d~v~~~~~~g---~-------l------~~h~~~V~aVa~S~Dg~-laSGS----~DgtIklWD~-t 448 (1115)
+...+... ....+.+|+..+ . + .++...+..+++||||+ ++... .+.+|++||+ +
T Consensus 218 yp~~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 218 YPKAGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CCBTTSCC---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CCCCcCcC---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 21111100 001244444332 1 1 12556688899999998 44322 2347999999 7
Q ss_pred CC----eeE--Ee--ecCCCcEE-----EEE--ecCCEEE-eeecc---cEEEEEeCCCccccccccccCCEEEEE-ecC
Q 001245 449 GN----RLQ--DF--QYLPFAVQ-----CLC--TFGSQIW-VGYMN---GIVQVLDLEGNLLGGWVAHSSPVIKMA-VGA 508 (1115)
Q Consensus 449 G~----~l~--tl--~gH~~~V~-----sla--~dG~~La-SGs~D---GtIrlWD~~G~ll~~l~gH~~~V~sva-~dg 508 (1115)
|+ |.. ++ .+|..+|. +++ |||+.|+ ..+.. ..|.+||++|.....+......|..+. +|+
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~ 374 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTS 374 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeC
Confidence 77 432 23 55666554 333 8999877 66532 579999998655555665556677654 777
Q ss_pred CEEE-eecC----CCceEEeeecC
Q 001245 509 GYIF-TLAN----HGGIRGWNVTS 527 (1115)
Q Consensus 509 ~~la-SgS~----DgtIRlWdl~~ 527 (1115)
+.|+ +++. -+...||.+..
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~ 398 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQL 398 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEET
T ss_pred CEEEEEEecCCCCCceeEEEEEEC
Confidence 7655 4443 24566776643
No 172
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.41 E-value=9.4e-12 Score=142.30 Aligned_cols=238 Identities=7% Similarity=0.022 Sum_probs=142.8
Q ss_pred eEEEeCCCCEEEEeCC-CCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCC--EEEEEe----------
Q 001245 144 QLWAGGENGLRVWNLK-ELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASG--VVWSGH---------- 210 (1115)
Q Consensus 144 ~l~ag~D~tvrvWdl~-tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~--~LaSGS---------- 210 (1115)
.|+++..++|++||+. ++..... .....+ +.+.+++++|+|+ +|++++
T Consensus 53 ~l~~~~~~~v~~~~~~~~g~~~~~-----------------~~~~~~--g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 113 (365)
T 1jof_A 53 NIYGAAMKKWSSFAVKSPTEIVHE-----------------ASHPIG--GHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp EEEEEEBTEEEEEEEEETTEEEEE-----------------EEEECC--SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred EEEEEccceEEEEEECCCCCEEEe-----------------eEeecC--CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence 4666433399999997 6654321 000011 2244588999999 466664
Q ss_pred ---CCCeEEEEECCCCCCCCCCCCcceEEee----cCCCCEEEEEEeCCCc-EEEEe-CCCcEEEEeCC-CcceeeccCC
Q 001245 211 ---RDGRIMCWKMNARLLDSDDGFGEVLSWQ----AHRGPVLSLCISSYGD-LWSGS-EGGGIKIWPWE-AIEKALSLKP 280 (1115)
Q Consensus 211 ---~DgtIrlWdl~~~~~~~~~~~~~~~~l~----GH~~~V~sVafSpdG~-L~SgS-~DgtIrvWdl~-t~~~~l~~~~ 280 (1115)
.||++++|+++.. + +....+. .|...+.+++|+|||+ |+++. .+++|++|+++ +++...
T Consensus 114 ~~~~~g~v~v~~~~~~----g---~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~---- 182 (365)
T 1jof_A 114 FYKFAGYGNVFSVSET----G---KLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL---- 182 (365)
T ss_dssp ESSSCCEEEEEEECTT----C---CEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE----
T ss_pred eecCCceEEEEccCCC----C---cCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE----
Confidence 7999999999731 0 1122222 3567899999999998 66554 46899999997 553220
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcC--CccEEEEEecCCceee
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TRELLKVFNIDGQIEN 356 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~--tg~ll~tl~~~~~~~~ 356 (1115)
... +....| ......+++++++..++.+. +++|.+|+.. +|++...+. .
T Consensus 183 ----~~~-------~~~~~~----------g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~----~-- 235 (365)
T 1jof_A 183 ----VGS-------VDAPDP----------GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH----S-- 235 (365)
T ss_dssp ----EEE-------EECSST----------TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE----E--
T ss_pred ----eee-------EecCCC----------CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc----e--
Confidence 000 000001 13467788899998887654 4789998754 565432110 0
Q ss_pred EEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCC------CceEEEE-EcC
Q 001245 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDN------RRTEALT-TSI 429 (1115)
Q Consensus 357 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~------~~V~aVa-~S~ 429 (1115)
+...+. .+.++. ..+..++ ++|
T Consensus 236 -~~~~~~--------------------------------------------------~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 236 -FPLIPP--------------------------------------------------GIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp -EESSCT--------------------------------------------------TCCCBCTTTSSBSEEEEEEEECT
T ss_pred -EEcCCC--------------------------------------------------CcCCcccccccccccccEEEECC
Confidence 000000 000111 1466788 999
Q ss_pred CCc-EEEEeC-CC-----eEEEEcC--CCCeeE---EeecCCCcEE--EEEe---cCCEEEeeec-ccEEEEEeCCCc
Q 001245 430 DGM-IWTGGA-NG-----LLLQWDP--NGNRLQ---DFQYLPFAVQ--CLCT---FGSQIWVGYM-NGIVQVLDLEGN 489 (1115)
Q Consensus 430 Dg~-laSGS~-Dg-----tIklWD~--tG~~l~---tl~gH~~~V~--sla~---dG~~LaSGs~-DGtIrlWD~~G~ 489 (1115)
||+ |+++.. ++ +|++|++ +|++.. .+..+...+. ++.| ||++|++++. +++|+||+++++
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 997 655543 23 8999998 466543 2333433333 3458 8999999986 499999998754
No 173
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.41 E-value=1e-10 Score=132.63 Aligned_cols=227 Identities=9% Similarity=0.067 Sum_probs=135.1
Q ss_pred CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCCcceEEeec--------CCCCEEEEEEeCCCc-EE-EEeC
Q 001245 192 SSVMCMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA--------HRGPVLSLCISSYGD-LW-SGSE 260 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS-~DgtIrlWdl~~~~~~~~~~~~~~~~l~G--------H~~~V~sVafSpdG~-L~-SgS~ 260 (1115)
..+..+++ +|+.|++++ .|++|.+|++..... ...........+ +...+.+++|+|||+ |+ ++..
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA--LLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC--BCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc--CcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 35566777 778777776 688999999974211 000111111111 233468999999998 65 4556
Q ss_pred CCcEEEEeCCCcce----e-eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCe
Q 001245 261 GGGIKIWPWEAIEK----A-LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLS 333 (1115)
Q Consensus 261 DgtIrvWdl~t~~~----~-l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~t 333 (1115)
+++|++|+++.... . +... .. .....+. .......+++++++..++.+. +++
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~---~~-------~~~~~~~-----------~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTK---GT-------PEAFKVA-----------PGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEE---EE-------EEEEECC-----------TTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CCEEEEEEEcCCCCcccccceeec---cc-------ccceecC-----------CCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 89999999875321 0 0000 00 0000000 112356788899988776554 678
Q ss_pred EEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccc
Q 001245 334 FALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG 413 (1115)
Q Consensus 334 I~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g 413 (1115)
|.+||+.+|++..... ..
T Consensus 235 v~v~~~~~g~~~~~~~---------------------------~~----------------------------------- 252 (361)
T 3scy_A 235 VIAFRYADGMLDEIQT---------------------------VA----------------------------------- 252 (361)
T ss_dssp EEEEEEETTEEEEEEE---------------------------EE-----------------------------------
T ss_pred EEEEEecCCceEEeEE---------------------------Ee-----------------------------------
Confidence 9999988775422110 00
Q ss_pred ccccCCCceEEEEEcCCCc-EEEEeC--CCeEEEEcCC---CC--eeEEeecCCCcEEEEE--ecCCEEEeee-cccEEE
Q 001245 414 GFGDDNRRTEALTTSIDGM-IWTGGA--NGLLLQWDPN---GN--RLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQ 482 (1115)
Q Consensus 414 ~l~~h~~~V~aVa~S~Dg~-laSGS~--DgtIklWD~t---G~--~l~tl~gH~~~V~sla--~dG~~LaSGs-~DGtIr 482 (1115)
....+...+..++++|||+ |+++.. +++|.+|+++ |+ .+..+.. ...+.+++ +||++|++++ .+++|.
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 0001112346788999998 655444 5899999983 55 4555554 44566666 7899999888 679999
Q ss_pred EEe--CC-Ccccccc-ccccCCEEEEEe
Q 001245 483 VLD--LE-GNLLGGW-VAHSSPVIKMAV 506 (1115)
Q Consensus 483 lWD--~~-G~ll~~l-~gH~~~V~sva~ 506 (1115)
+|+ .+ |++.... ..|...+.||.+
T Consensus 332 v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 332 IFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 965 43 5554332 235556777765
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.41 E-value=3.4e-11 Score=151.20 Aligned_cols=108 Identities=12% Similarity=-0.002 Sum_probs=77.5
Q ss_pred CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC---------
Q 001245 142 EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD--------- 212 (1115)
Q Consensus 142 ~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D--------- 212 (1115)
++++++++|++|++||++++.+...+ .+.. +. .. ......++|||||+.|+.++.|
T Consensus 27 dg~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~-------~~--~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 27 DHEYLYKQENNILVFNAEYGNSSVFL-----ENST-------FD--EF-GHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp SSEEEEEETTEEEEEETTTCCEEEEE-----CTTT-------TT--TC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred CCcEEEEcCCcEEEEECCCCceEEEE-----echh-------hh--hh-cccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 45666655999999999998765320 0000 00 00 1112347889999999999988
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcce
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEK 274 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~ 274 (1115)
+.+.+||+.++ ....+.+|.+.+..++|||||+ |+.++ |+.|.+|++.++..
T Consensus 92 ~~~~~~d~~~~---------~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 92 ASYDIYDLNKR---------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp EEEEEEETTTT---------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred eEEEEEECCCC---------cEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce
Confidence 45569999974 2445778889999999999998 77664 78999999988654
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.41 E-value=2.8e-11 Score=136.60 Aligned_cols=227 Identities=11% Similarity=-0.052 Sum_probs=146.6
Q ss_pred CEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCC
Q 001245 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGF 231 (1115)
Q Consensus 152 tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~ 231 (1115)
+|.+||.+++..... + ...+ ...+..|+++++|.++++.+.+++|++||.++..
T Consensus 70 ~i~~~d~~~g~~~~~-----------------~-~~~~-~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~------- 123 (329)
T 3fvz_A 70 TILVIDPNNAEILQS-----------------S-GKNL-FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE------- 123 (329)
T ss_dssp CEEEECTTTCCEEEE-----------------E-CTTT-CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-------
T ss_pred cEEEEECCCCeEEec-----------------c-CCCc-cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-------
Confidence 699999988775432 0 0011 3467889999999999999999999999987621
Q ss_pred cceEEe---------ecCCCCEEEEEEeC-CCcE-EEEe-CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc
Q 001245 232 GEVLSW---------QAHRGPVLSLCISS-YGDL-WSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1115)
Q Consensus 232 ~~~~~l---------~GH~~~V~sVafSp-dG~L-~SgS-~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~ 299 (1115)
..+.++ .+|.....+|+|+| +|.| ++.+ .+++|++|+.+. .....+. ..+
T Consensus 124 ~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~~~-----------------~~g 185 (329)
T 3fvz_A 124 GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQWG-----------------EES 185 (329)
T ss_dssp CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEEEC-----------------EEC
T ss_pred EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEEec-----------------cCC
Confidence 123333 35666789999999 7886 5665 699999999543 2221110 000
Q ss_pred cceecceeeeecCCeEEEEEeCCCCEEEee--cCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEE
Q 001245 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSA--GFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIV 377 (1115)
Q Consensus 300 h~~~~~~~~~~s~~v~~las~~~~~~v~S~--sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~ 377 (1115)
... ......-.....+++++++..|+.+ .++.|++||..+|++++++...+.-
T Consensus 186 ~~~--~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~----------------------- 240 (329)
T 3fvz_A 186 SGS--SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG----------------------- 240 (329)
T ss_dssp CSS--SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT-----------------------
T ss_pred CCC--CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC-----------------------
Confidence 000 0000000234678888874445443 3578999999999988876321100
Q ss_pred ecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC------CCc-EEEEeCCCeEEEEcC-CC
Q 001245 378 TSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI------DGM-IWTGGANGLLLQWDP-NG 449 (1115)
Q Consensus 378 ~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~------Dg~-laSGS~DgtIklWD~-tG 449 (1115)
..+.+++++| +|. .++.+.+.+|++||. +|
T Consensus 241 ------------------------------------------~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g 278 (329)
T 3fvz_A 241 ------------------------------------------RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG 278 (329)
T ss_dssp ------------------------------------------TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred ------------------------------------------CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence 0011122222 222 233445679999998 89
Q ss_pred CeeEEee---cCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCc
Q 001245 450 NRLQDFQ---YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGN 489 (1115)
Q Consensus 450 ~~l~tl~---gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ 489 (1115)
+++.++. +|...+.+|+ ++|.++++...+++|++|+++++
T Consensus 279 ~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 279 EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 9999884 6777788888 67878888888999999998753
No 176
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.40 E-value=1.5e-11 Score=151.40 Aligned_cols=280 Identities=10% Similarity=-0.014 Sum_probs=167.1
Q ss_pred cceeeEEEEEeCCeE-EEe----CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc-CCceEEEEEcCCCC
Q 001245 131 IGCFLRTIVCTEEQL-WAG----GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASG 204 (1115)
Q Consensus 131 ~~~~l~~l~~~~~~l-~ag----~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~la~s~dg~ 204 (1115)
.+..+..++.+.+.+ |+. .++..+||....+...+.+ .++.. .....+|+ .+...+...||||+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--------~~~~~--~~~~~~~~~~~~~~~~~~SPDg~ 91 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA--------LPAPW--NVRNRVFEYSGFPWAGVPRPAGG 91 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES--------SCTTC--CBCCCGGGTCCCCEEEECCSSSS
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee--------CCCCc--cccccccccCCccceeeeecCCC
Confidence 456777888886644 443 3678999996433222210 00000 00001111 11122222349998
Q ss_pred E-EEEEeC-CCeEEEEECC--C-CCCCCCCCCcceEEeec-----CCCCEEEEEEeCCCc-EEEEeCC----------Cc
Q 001245 205 V-VWSGHR-DGRIMCWKMN--A-RLLDSDDGFGEVLSWQA-----HRGPVLSLCISSYGD-LWSGSEG----------GG 263 (1115)
Q Consensus 205 ~-LaSGS~-DgtIrlWdl~--~-~~~~~~~~~~~~~~l~G-----H~~~V~sVafSpdG~-L~SgS~D----------gt 263 (1115)
. |+.++. +..|.+|+++ + + ....+.. |...+.+++|||||+ |++++.| .+
T Consensus 92 ~~la~~~~~~~~l~~~~~~~~g~~---------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 92 PLLVFTHFGDQRLYAFEPDAPGGA---------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CEEEEEBTTTCCEEEECTTSTTCC---------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred eEEEEEECCCCeEEEEcCCCCCCC---------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 8 776554 5556666655 2 2 2344555 778899999999998 7887777 68
Q ss_pred EEEEeCCC------cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-C-----
Q 001245 264 IKIWPWEA------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F----- 331 (1115)
Q Consensus 264 IrvWdl~t------~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d----- 331 (1115)
|++||+++ ++.. .+.. .+. ..+..+++++++..|+.++ +
T Consensus 163 i~~~~~~~~~~~~~~~~~-~l~~------------------~~~----------~~~~~~~~SpDG~~la~~~~~~~~~~ 213 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAVR-ELSD------------------DAH----------RFVTGPRLSPDGRQAVWLAWDHPRMP 213 (662)
T ss_dssp EEEEETTSTTTTCGGGSE-ESSC------------------SCS----------SEECCCEECTTSSEEEEEEECTTCCT
T ss_pred EEEEECCCCccccCCcee-EEEe------------------cCC----------CcccCceECCCCCEEEEEECCCCCCC
Confidence 99999987 4332 1110 010 1122344567777665443 2
Q ss_pred ---CeEEEEEcC-Ccc---EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC
Q 001245 332 ---LSFALWDAR-TRE---LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD 404 (1115)
Q Consensus 332 ---~tI~lWD~~-tg~---ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d 404 (1115)
..|.+||+. +|. ......
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~------------------------------------------------------- 238 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLG------------------------------------------------------- 238 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEE-------------------------------------------------------
T ss_pred CCCcEEEEEEECCCCcccccEEeCC-------------------------------------------------------
Confidence 368888887 452 111110
Q ss_pred cEEEEecccccccCCCceEEEEEcCCCcE-EEEeCCC--eEEEEcC-CCCeeEEeecCCCc--------EEEEE--ecCC
Q 001245 405 AVRRVAAKGGFGDDNRRTEALTTSIDGMI-WTGGANG--LLLQWDP-NGNRLQDFQYLPFA--------VQCLC--TFGS 470 (1115)
Q Consensus 405 ~v~~~~~~g~l~~h~~~V~aVa~S~Dg~l-aSGS~Dg--tIklWD~-tG~~l~tl~gH~~~--------V~sla--~dG~ 470 (1115)
++...+..++++|||++ ++++.|+ .|.+||+ +|++.+.+.+|... +.+++ ++|+
T Consensus 239 ------------~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 239 ------------GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp ------------ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred ------------CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence 11234566788999984 5677788 6777777 56655544443322 34555 5789
Q ss_pred EEEeeecccEEEEE--eCCCccccccccccCCEEEE-EecCCEE--EeecCCCceEEeeec
Q 001245 471 QIWVGYMNGIVQVL--DLEGNLLGGWVAHSSPVIKM-AVGAGYI--FTLANHGGIRGWNVT 526 (1115)
Q Consensus 471 ~LaSGs~DGtIrlW--D~~G~ll~~l~gH~~~V~sv-a~dg~~l--aSgS~DgtIRlWdl~ 526 (1115)
++++++. ++++|| |+++..+..+..|.+.+.++ +++++.+ ++++.+...++|.+.
T Consensus 307 ~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 307 IAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp EEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 9999998 999999 66655578888998888888 7877643 355667766777654
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.36 E-value=1e-10 Score=134.33 Aligned_cols=268 Identities=8% Similarity=-0.028 Sum_probs=151.0
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe----------CCCeEEEE
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCW 218 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS----------~DgtIrlW 218 (1115)
.|++|.+||.+++..... .. . |..+ .++|+|||+.|+.+. .|++|.+|
T Consensus 29 ~d~~v~v~D~~t~~~~~~------------------i~-~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~ 86 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGM------------------VP-T-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVW 86 (361)
T ss_dssp GGCEEEEEETTTCCEEEE------------------EE-C-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred ccCeEEEEECCCCeEEEE------------------ec-C-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEE
Confidence 478999999988875432 11 1 1234 799999999999987 37889999
Q ss_pred ECCCCCCCCCCCCcceEEeec------CCCCEEEEEEeCCCc-EEEEe-C-CCcEEEEeCCCcceeec-cCCCcceeEEE
Q 001245 219 KMNARLLDSDDGFGEVLSWQA------HRGPVLSLCISSYGD-LWSGS-E-GGGIKIWPWEAIEKALS-LKPEERHTAAL 288 (1115)
Q Consensus 219 dl~~~~~~~~~~~~~~~~l~G------H~~~V~sVafSpdG~-L~SgS-~-DgtIrvWdl~t~~~~l~-~~~~~~~~~a~ 288 (1115)
|+.+. +.+.++.. +......|+|+|||+ |+.++ . +++|.+||+++++.... +.
T Consensus 87 d~~t~--------~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--------- 149 (361)
T 2oiz_A 87 DADKL--------TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--------- 149 (361)
T ss_dssp ETTTC--------CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG---------
T ss_pred ECcCC--------cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec---------
Confidence 98863 23344432 234567899999998 66655 3 68999999988654311 10
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCC-CEEEe-ecCCeEEEEEcCC-ccEEEEEecCCceeeEEeccCCCC
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSR-AKVWS-AGFLSFALWDART-RELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~-~~v~S-~sd~tI~lWD~~t-g~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
..+. .+ +...+.+ ..+++ +.++.+.+|+..+ |+....... .. .+.+...
T Consensus 150 --------~~~~---~~-----------v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-~~-----~~~~~~~ 201 (361)
T 2oiz_A 150 --------AAGC---WS-----------VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-KQ-----MFSVKDD 201 (361)
T ss_dssp --------GTTE---EE-----------EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-CC-----CSCTTTS
T ss_pred --------CCCc---ce-----------eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-cc-----eEcCCCC
Confidence 0000 00 1112211 22222 3356677777754 555422110 00 0011000
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccc-eEEeccCcEEEEecc-------------cccccCC----CceEEEEE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN-AIMGAADAVRRVAAK-------------GGFGDDN----RRTEALTT 427 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~-~~~Gs~d~v~~~~~~-------------g~l~~h~----~~V~aVa~ 427 (1115)
... +.+.+++.. +.....+.+..++.. ..-..+. .....+++
T Consensus 202 ~~~--------------------~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 202 PIF--------------------IAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp CBC--------------------SCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred ceE--------------------EEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 000 000000000 000001111111110 0000000 11112678
Q ss_pred cCCCc-EEEEeC-----------CCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-C--c
Q 001245 428 SIDGM-IWTGGA-----------NGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-G--N 489 (1115)
Q Consensus 428 S~Dg~-laSGS~-----------DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G--~ 489 (1115)
++|+. ++.+.. .++|.+||+ +++.+.++..|. +.+|+ +||++|++++. ++|.+||++ + +
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 99865 554432 358999999 899999999887 77777 79999999987 999999986 8 8
Q ss_pred cccccccccCCEEEEEe
Q 001245 490 LLGGWVAHSSPVIKMAV 506 (1115)
Q Consensus 490 ll~~l~gH~~~V~sva~ 506 (1115)
+++++..+......+++
T Consensus 339 ~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 339 LLRTIEGAAEASLQVQF 355 (361)
T ss_dssp EEEEETTSCSSEEEEEE
T ss_pred eeEEeccCCCCcEEEEe
Confidence 88887666666666654
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.35 E-value=4.2e-11 Score=136.22 Aligned_cols=289 Identities=9% Similarity=-0.027 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCEEEEEeCC---CeEEEEECCCCCCCCCCCCcceEEeecCCCC-EEEEEEeCCCc-EEEEeCCCcEEEEe
Q 001245 194 VMCMVGDEASGVVWSGHRD---GRIMCWKMNARLLDSDDGFGEVLSWQAHRGP-VLSLCISSYGD-LWSGSEGGGIKIWP 268 (1115)
Q Consensus 194 V~~la~s~dg~~LaSGS~D---gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~-V~sVafSpdG~-L~SgS~DgtIrvWd 268 (1115)
+.+++|+|||+.|+..+.+ ..|.+||++++ ....+..+... +..++|||||+ |+.++.++.|++||
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---------~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---------QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---------EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC---------cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 5567899999998877543 36888898863 23344444333 33478999998 78888999999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee------cCCeEEEEEcCCc
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA------GFLSFALWDARTR 342 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~------sd~tI~lWD~~tg 342 (1115)
+.+++............ .....+............ ......++++..++.. .+..|.+||+.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~----~~g~~l~~~~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 109 LETLEEQVIYTVDEEWK----GYGTWVANSDCTKLVGIE------ILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp TTTCCEEEEEECCTTEE----EEEEEEECTTSSEEEEEE------EEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred CCCCCcEEEEecccccC----CCCCEEEeccCCcccccc------ccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 98865432211111100 000000000000000000 0000123333333221 2357899999999
Q ss_pred cEEEEEecCCceeeEEeccC-CCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccc----cccc
Q 001245 343 ELLKVFNIDGQIENRVDMSL-LPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKG----GFGD 417 (1115)
Q Consensus 343 ~ll~tl~~~~~~~~~v~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g----~l~~ 417 (1115)
+......... .+..+.+++ +... +-+......... ...+..++..+ .+..
T Consensus 179 ~~~~~~~~~~-~~~~~~~sp~dg~~-------l~~~~~~~~~~~-----------------~~~l~~~d~~~~~~~~l~~ 233 (396)
T 3c5m_A 179 ELEVIHQDTA-WLGHPIYRPFDDST-------VGFCHEGPHDLV-----------------DARMWLVNEDGSNVRKIKE 233 (396)
T ss_dssp CEEEEEEESS-CEEEEEEETTEEEE-------EEEEECSCSSSC-----------------SCCCEEEETTSCCCEESSC
T ss_pred cEEeeccCCc-ccccceECCCCCCE-------EEEEecCCCCCC-----------------CceEEEEECCCCceeEeec
Confidence 8766553322 223334443 1110 000000000000 01233333221 1122
Q ss_pred C--CCceEEEEEcCCCc-EEEEeCC-----CeEEEEcC-CCCeeEEeecCCCcEEEEEe-cCCEEEeee-----------
Q 001245 418 D--NRRTEALTTSIDGM-IWTGGAN-----GLLLQWDP-NGNRLQDFQYLPFAVQCLCT-FGSQIWVGY----------- 476 (1115)
Q Consensus 418 h--~~~V~aVa~S~Dg~-laSGS~D-----gtIklWD~-tG~~l~tl~gH~~~V~sla~-dG~~LaSGs----------- 476 (1115)
+ ...+..++++|||. |+.++.+ +.|.+||+ +|+....... ........+ ||++|++++
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PPCSHLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CSEEEEEECSSSSEEEEEECCC--------
T ss_pred cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CCCCCCccCCCCceEEEecCCcceeecccc
Confidence 2 22467789999997 7666544 55999999 6654433221 111133447 999888765
Q ss_pred -----cccEEEEEeCCCccccccccccCC-----------EEEE--EecCCEEEeec-CCCceEEeeecC
Q 001245 477 -----MNGIVQVLDLEGNLLGGWVAHSSP-----------VIKM--AVGAGYIFTLA-NHGGIRGWNVTS 527 (1115)
Q Consensus 477 -----~DGtIrlWD~~G~ll~~l~gH~~~-----------V~sv--a~dg~~laSgS-~DgtIRlWdl~~ 527 (1115)
.++.|.+||+++..+..+..|... +.++ .+||++|+.++ .++...+|.+..
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 347899999974444566666542 3333 46888887665 467888887754
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.35 E-value=9.2e-11 Score=129.44 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=146.5
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEE-EeCCCcEEEEe
Q 001245 191 VSSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWS-GSEGGGIKIWP 268 (1115)
Q Consensus 191 ~~~V~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~S-gS~DgtIrvWd 268 (1115)
.....+++|+++|+ ++|++..++.|..||.++ . ...+..+...+.+|+|+++|+|+. .+.++.|.+||
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------Q-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------C-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------C-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 34567899999998 899999999999999986 2 456777888999999999999754 44568999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-Ce--------------
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LS-------------- 333 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~t-------------- 333 (1115)
..+++..... .. .. +. +...+..++.++++..+++... ++
T Consensus 97 ~~~g~~~~~~-----------------~~--~~---~~---~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 97 EPGGEWESIA-----------------DS--FE---GK---KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp STTCCEEEEE-----------------CE--ET---TE---ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred CCCCcEEEEe-----------------ec--cC---CC---CCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 9776432100 00 00 00 0122334666776654443110 00
Q ss_pred -EEEEEcCC-ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEec
Q 001245 334 -FALWDART-RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAA 411 (1115)
Q Consensus 334 -I~lWD~~t-g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~ 411 (1115)
-.||.+.. |+ +..
T Consensus 152 ~~~l~~~~~~g~--------------------------------------------------------------~~~--- 166 (296)
T 3e5z_A 152 GRWVFRLAPDGT--------------------------------------------------------------LSA--- 166 (296)
T ss_dssp SCEEEEECTTSC--------------------------------------------------------------EEE---
T ss_pred CcEEEEECCCCC--------------------------------------------------------------EEE---
Confidence 01111100 00 000
Q ss_pred ccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC--CCCe---eEEeecCCCcEEEEE--ecCCEEEeeecccEEEE
Q 001245 412 KGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP--NGNR---LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQV 483 (1115)
Q Consensus 412 ~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~--tG~~---l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrl 483 (1115)
+..+......+++++||. +++.+.++.|.+||+ +|++ .+.+..+...+.+|+ ++|.+. ++. ++.|.+
T Consensus 167 ---~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~-~~~v~~ 241 (296)
T 3e5z_A 167 ---PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW-ASA-GDGVHV 241 (296)
T ss_dssp ---EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE-EEE-TTEEEE
T ss_pred ---eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE-EEc-CCeEEE
Confidence 111223456788999997 567777889999998 4665 344433444556666 567644 444 888999
Q ss_pred EeCCCccccccccccCCEEEEEe---cCCEEEeecCCCceEEeeec
Q 001245 484 LDLEGNLLGGWVAHSSPVIKMAV---GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 484 WD~~G~ll~~l~gH~~~V~sva~---dg~~laSgS~DgtIRlWdl~ 526 (1115)
||.+|+++..+..+.. +.++++ +++.|+.++.++ +|.+.
T Consensus 242 ~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~ 283 (296)
T 3e5z_A 242 LTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIE 283 (296)
T ss_dssp ECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEE
T ss_pred ECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEE
Confidence 9999998888888887 888876 456888887774 45443
No 180
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.33 E-value=2.3e-11 Score=130.61 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=78.6
Q ss_pred ceEEEEEEeCCCCCCc-----hhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhccc
Q 001245 553 KILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKIL 627 (1115)
Q Consensus 553 rI~v~TWNv~~~~~~~-----~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L 627 (1115)
.+-|.||||++..... ..+.++|.. .+||| |+|||+... +.+.+.+.+
T Consensus 9 ~l~v~swNi~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~-----------------------~~~~l~~~~ 61 (256)
T 4gz1_A 9 TISFITWNIDGLDGCNLPERARGVCSCLAL--YSPDV--VFLQEVIPP-----------------------YCAYLKKRA 61 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHHHHC
T ss_pred cEEEEEEEcCCCcCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCCHH-----------------------HHHHHHhhc
Confidence 6889999998654321 235566652 35785 789998421 122333333
Q ss_pred CCCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccchhHHH
Q 001245 628 DDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (1115)
Q Consensus 628 ~~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~ 707 (1115)
. .|..... .-.+-...++.++..... +... .....+....++.+.+.+.+.+..|.++|+||.++....+.
T Consensus 62 ~---~~~~~~~-~~~~~~~~~l~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 132 (256)
T 4gz1_A 62 A---SYTIITG-NEEGYFTAILLKKGRVKF---KSQE--IIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAE 132 (256)
T ss_dssp T---TEEEEES-CSSSSEEEEEEETTTEEE---EEEE--EEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHH
T ss_pred c---ccceeec-cccCCceEEEEEeccccc---eecc--cccCCcccccceEEEEEEEeCCEEEEEEeecccccccchhh
Confidence 2 1221111 112222344555443221 1111 11233344567889999999999999999999998888888
Q ss_pred HHHHHHHHHHhc
Q 001245 708 RNADFDHVYRTM 719 (1115)
Q Consensus 708 Rn~d~~~I~~~l 719 (1115)
|.+++..|++.+
T Consensus 133 ~~~q~~~~~~~l 144 (256)
T 4gz1_A 133 RIRQLKTVLGKM 144 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHhhhh
Confidence 888888888765
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.33 E-value=5.4e-10 Score=122.27 Aligned_cols=232 Identities=7% Similarity=0.045 Sum_probs=147.3
Q ss_pred EEEEe-CCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEE-cCCCCEEEEEeC-
Q 001245 137 TIVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVG-DEASGVVWSGHR- 211 (1115)
Q Consensus 137 ~l~~~-~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~-s~dg~~LaSGS~- 211 (1115)
.++.+ ++.+|++ .++.|++||.+ +.....+ .-.+ . ...+ ...+.++++ ++++.+++++..
T Consensus 34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~------~~~~---~----~~~~-~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 34 GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF------GECG---K----RDSQ-LLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE------CCBS---S----STTC-BSSEEEEEEETTTTEEEEEECGG
T ss_pred eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEe------cccC---C----Cccc-ccCceEEEEEcCCCeEEEEcCCC
Confidence 44444 5567764 57899999987 4333210 0000 0 0011 346788999 477777777644
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEee-cCCCCEEEEEEeCCCcE-EEEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~-GH~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
++.|++||.++ +....+. ++...+.+|+++++|+| ++.+.++.|++||.+.. ....+
T Consensus 99 ~~~i~~~d~~g---------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~----------- 157 (286)
T 1q7f_A 99 THQIQIYNQYG---------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKF----------- 157 (286)
T ss_dssp GCEEEEECTTS---------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEE-----------
T ss_pred CCEEEEECCCC---------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEe-----------
Confidence 89999999654 2333442 35567899999999996 46667899999997542 11000
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~ 368 (1115)
...++. .....+++++++..+++.. ++.|++||. +|+.+..+..+
T Consensus 158 ------~~~~~~----------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~----------------- 203 (286)
T 1q7f_A 158 ------GCSKHL----------EFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGE----------------- 203 (286)
T ss_dssp ------ECTTTC----------SSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCT-----------------
T ss_pred ------CCCCcc----------CCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccC-----------------
Confidence 000111 2356778888766555543 578999996 44444433111
Q ss_pred cccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEE-EEeCCC-eEEEEc
Q 001245 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-TGGANG-LLLQWD 446 (1115)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~la-SGS~Dg-tIklWD 446 (1115)
++...+..++++++|.++ +...++ .|.+||
T Consensus 204 ------------------------------------------------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 204 ------------------------------------------------GITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp ------------------------------------------------TTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred ------------------------------------------------CccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 011235668889999865 455565 999999
Q ss_pred CCCCeeEEeecCCC--cEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 447 PNGNRLQDFQYLPF--AVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 447 ~tG~~l~tl~gH~~--~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.+|+.+.++..+.. .+.+++ ++|+++++ +.|++|++|+..
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 236 QDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred CCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 99999988877644 366777 67876655 679999999975
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.32 E-value=3.2e-10 Score=127.24 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=68.0
Q ss_pred cCCCc-EEEEeCC--------CeEEEEcCCCCeeEEeecCCCcEEE-EEe-cCCEEEeeecccEEEEEeCC-Cccccccc
Q 001245 428 SIDGM-IWTGGAN--------GLLLQWDPNGNRLQDFQYLPFAVQC-LCT-FGSQIWVGYMNGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 428 S~Dg~-laSGS~D--------gtIklWD~tG~~l~tl~gH~~~V~s-la~-dG~~LaSGs~DGtIrlWD~~-G~ll~~l~ 495 (1115)
+|||. |+.++.+ ..|.+|| +|+....+.+|...|.+ ++. || ++++++.+++++|| +. |+. ..+.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~-~~~~ 298 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEI-KPIA 298 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSE-EEEE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCce-EEEe
Confidence 66665 5555533 4688889 77766666667777775 553 56 88899999999999 86 654 4445
Q ss_pred cccCCEEEEEecCCEEEeecCCCce-EEeeec
Q 001245 496 AHSSPVIKMAVGAGYIFTLANHGGI-RGWNVT 526 (1115)
Q Consensus 496 gH~~~V~sva~dg~~laSgS~DgtI-RlWdl~ 526 (1115)
.+.+.|.++++.+..+++++.+++. ++|.+.
T Consensus 299 ~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred cCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 5677888888755667777777765 888875
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.31 E-value=1e-10 Score=134.27 Aligned_cols=258 Identities=9% Similarity=0.063 Sum_probs=149.4
Q ss_pred CCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe----------CCCcEEEEeCCCcceeeccC
Q 001245 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGIKIWPWEAIEKALSLK 279 (1115)
Q Consensus 211 ~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS----------~DgtIrvWdl~t~~~~l~~~ 279 (1115)
.|++|.+||.+++ +.+.++..+..+ .|+|+|||+ |+.++ .|++|.+||+.+++...++.
T Consensus 29 ~d~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~ 98 (361)
T 2oiz_A 29 TESRVHVYDYTNG--------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS 98 (361)
T ss_dssp GGCEEEEEETTTC--------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred ccCeEEEEECCCC--------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence 5889999998863 335567777666 899999998 66654 37789999998765432110
Q ss_pred CCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec---CCeEEEEEcCCccEEEE-EecCCcee
Q 001245 280 PEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKV-FNIDGQIE 355 (1115)
Q Consensus 280 ~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s---d~tI~lWD~~tg~ll~t-l~~~~~~~ 355 (1115)
. ...+.. .+ .....+++++++..|+.+. +++|.+||+.+++.+.+ +...+..
T Consensus 99 ~----------------~~~~~~-~g------~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~- 154 (361)
T 2oiz_A 99 L----------------PPKRVQ-GL------NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW- 154 (361)
T ss_dssp E----------------CTTBCC-BC------CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-
T ss_pred c----------------Cccccc-cC------CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-
Confidence 0 000000 00 1223467788888887653 47899999999998887 5433221
Q ss_pred eEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc--CcEE-EEecccccccCCCceEEEEEcCCCc
Q 001245 356 NRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA--DAVR-RVAAKGGFGDDNRRTEALTTSIDGM 432 (1115)
Q Consensus 356 ~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~--d~v~-~~~~~g~l~~h~~~V~aVa~S~Dg~ 432 (1115)
.+.+.+.... ..+.+.+++..+..... +.+. .......+......+ .+.+++++.
T Consensus 155 -~v~~~p~~~~--------------------~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~ 212 (361)
T 2oiz_A 155 -SVIPQPNRPR--------------------SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD 212 (361)
T ss_dssp -EEEECTTSSS--------------------EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred -eeEEcCCCCe--------------------eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence 0111221100 00111122211111110 1111 000000011111111 222345554
Q ss_pred -EEEEeCCCeEEEEcCC-CC--eeEEeec------------CCCcEEEEEecCCEEEeeec-----------ccEEEEEe
Q 001245 433 -IWTGGANGLLLQWDPN-GN--RLQDFQY------------LPFAVQCLCTFGSQIWVGYM-----------NGIVQVLD 485 (1115)
Q Consensus 433 -laSGS~DgtIklWD~t-G~--~l~tl~g------------H~~~V~sla~dG~~LaSGs~-----------DGtIrlWD 485 (1115)
++..+.+++|.+||+. +. .+.++.- +.....++.+||++++++.. +++|.+||
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD 292 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD 292 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence 6667788999999984 32 2222211 11112455688998888754 35899999
Q ss_pred CC-CccccccccccCCEEEEEe--cCCEEEeecCCCceEEeeecC
Q 001245 486 LE-GNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 486 ~~-G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl~~ 527 (1115)
++ ++.+.++..|. +.+|++ ||++|++++. ++|.+||..+
T Consensus 293 ~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 293 TKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp TTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred CCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 87 88899998887 777764 8999998887 9999999876
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.27 E-value=2.2e-10 Score=128.14 Aligned_cols=254 Identities=12% Similarity=0.020 Sum_probs=161.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEE-EEeCCCcEEEEeCC
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWE 270 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~-SgS~DgtIrvWdl~ 270 (1115)
..|.+++|++++..+++.+.+++++.|.- +....+.+|...+.+++|+++|+|+ +++.++.|.+||.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA-----------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC-----------EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCccccc-----------ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC
Confidence 45677889999888888899999999932 2355677888888999999999975 78889999999998
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-----CeEEEEEcCCccEE
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELL 345 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-----~tI~lWD~~tg~ll 345 (1115)
+++.... . .. ....+..++.++++..+++... ..|.+||..+++..
T Consensus 75 ~~~~~~~-----------------~--~~----------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 75 TKEIKRP-----------------F--VS----------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 125 (333)
T ss_dssp TCCEEEE-----------------E--EC----------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CCcEEEE-----------------e--eC----------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence 7643210 0 00 1134667888887766555543 47999999988765
Q ss_pred EEEec--CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec-------cCcEEEEeccc-cc
Q 001245 346 KVFNI--DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-------ADAVRRVAAKG-GF 415 (1115)
Q Consensus 346 ~tl~~--~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-------~d~v~~~~~~g-~l 415 (1115)
..+.. .+...+.+.+++. +...++.. ...+.+++..+ .+
T Consensus 126 ~~~~~~~~~~~~~~i~~d~~-------------------------------g~l~v~~~~~~~~~~~~~l~~~~~~~~~~ 174 (333)
T 2dg1_A 126 DIIEDLSTAYCIDDMVFDSK-------------------------------GGFYFTDFRGYSTNPLGGVYYVSPDFRTV 174 (333)
T ss_dssp EEECSSSSCCCEEEEEECTT-------------------------------SCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred EEEccCccCCcccceEECCC-------------------------------CCEEEEeccccccCCCceEEEEeCCCCEE
Confidence 44421 1112223333332 21111111 11233333321 11
Q ss_pred ---ccCCCceEEEEEcCCCc-EE-EEeCCCeEEEEcC--CCCeeEEe--------ecCCCcEEEEE--ecCCEEEeeecc
Q 001245 416 ---GDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP--NGNRLQDF--------QYLPFAVQCLC--TFGSQIWVGYMN 478 (1115)
Q Consensus 416 ---~~h~~~V~aVa~S~Dg~-la-SGS~DgtIklWD~--tG~~l~tl--------~gH~~~V~sla--~dG~~LaSGs~D 478 (1115)
......+..+++++||. ++ +.+.++.|.+||. +|..+..+ .++ ..+..++ ++|.++++...+
T Consensus 175 ~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~ 253 (333)
T 2dg1_A 175 TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQ 253 (333)
T ss_dssp EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETT
T ss_pred EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCC
Confidence 11223467899999986 64 4556889999998 45544322 222 3566777 468877777778
Q ss_pred cEEEEEeCCCccccccccccC------CEEEEEe--cCCEEEeecCC
Q 001245 479 GIVQVLDLEGNLLGGWVAHSS------PVIKMAV--GAGYIFTLANH 517 (1115)
Q Consensus 479 GtIrlWD~~G~ll~~l~gH~~------~V~sva~--dg~~laSgS~D 517 (1115)
+.|.+||.+|+.+..+..+.. .+.++++ |++.|+.++.+
T Consensus 254 ~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 254 GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999998877766654432 5777775 66677655444
No 185
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.20 E-value=1.5e-10 Score=124.34 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=79.2
Q ss_pred cccceEEEEEEeCCCCCCc-----hhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHh
Q 001245 550 ENLKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG 624 (1115)
Q Consensus 550 ~~irI~v~TWNv~~~~~~~-----~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~ 624 (1115)
+..++-|.||||++..... +.|.++|.. .+||| |+|||+.... ...+.
T Consensus 10 ~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~--~~pDI--i~LQEv~~~~-----------------------~~~l~ 62 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPID 62 (256)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHHH
T ss_pred CCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEecChhH-----------------------hHHHH
Confidence 4567999999998643321 235566652 45774 7899984311 11222
Q ss_pred cccCCCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccchh
Q 001245 625 KILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEA 704 (1115)
Q Consensus 625 ~~L~~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~ 704 (1115)
+.+. .|.......-.+-...++.++.+. ...... ..+......++.+.+.+.+.+..|.++|+||.+....
T Consensus 63 ~~~~---~~~~~~~~~~~~~g~~il~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~ 133 (256)
T 4fva_A 63 KLQS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDV--IHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 133 (256)
T ss_dssp GGGG---TEEEEESSTTSSSEEEEEEETTCE----EEEEEE--EECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred HhcC---CceEeecCCCCCcceEEEEeeccc----ceeccc--ccCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcc
Confidence 2221 122222222333344556665432 112221 1222333567788899999999999999999998887
Q ss_pred HHHHHHHHHHHHHhc
Q 001245 705 VNRRNADFDHVYRTM 719 (1115)
Q Consensus 705 ~~~Rn~d~~~I~~~l 719 (1115)
-.+|.+++..+...+
T Consensus 134 ~~~~~~q~~~~~~~~ 148 (256)
T 4fva_A 134 RPQRCAQFGFCMDKV 148 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 777888887776643
No 186
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.19 E-value=4.4e-10 Score=118.89 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=38.6
Q ss_pred cCcceEEEEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 675 gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
...+.+.+.+.+.+..+.++|+||.+.....+.|.+++..|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l 138 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKI 138 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHH
Confidence 345677888889999999999999998888888999999988765
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.19 E-value=1e-08 Score=114.41 Aligned_cols=220 Identities=11% Similarity=0.047 Sum_probs=134.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCcEE-EEeCC----CcE
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLW-SGSEG----GGI 264 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~L~-SgS~D----gtI 264 (1115)
...+.+++++++|++++++..++.|.+||.+++. ...+ ..+...|.+|+++++|+|+ ++..+ +.|
T Consensus 44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE---------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC---------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred CccccCcEECCCCCEEEEECCCCEEEEEeCCCCc---------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 3456889999999988899999999999998632 2233 3577889999999999965 44455 689
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-------CeEEEE
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-------LSFALW 337 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-------~tI~lW 337 (1115)
.+||.+++.....+. ... ....+..++.++++..+++... ..|..|
T Consensus 115 ~~~d~~~~~~~~~~~-------------------~~~--------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 115 FAATENGDNLQDIIE-------------------DLS--------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp EEECTTSCSCEEEEC-------------------SSS--------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred EEEeCCCCEEEEEEc-------------------cCc--------cCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 999988754320000 000 0134566777877765555432 345666
Q ss_pred EcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEE-ec-cCcEEEEec--cc
Q 001245 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIM-GA-ADAVRRVAA--KG 413 (1115)
Q Consensus 338 D~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~-Gs-~d~v~~~~~--~g 413 (1115)
|..+++......... ..+.+.+++... .+.. .. .+.+.+++. .+
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~i~~~~dg~-------------------------------~l~v~~~~~~~i~~~d~~~~g 215 (333)
T 2dg1_A 168 SPDFRTVTPIIQNIS-VANGIALSTDEK-------------------------------VLWVTETTANRLHRIALEDDG 215 (333)
T ss_dssp CTTSCCEEEEEEEES-SEEEEEECTTSS-------------------------------EEEEEEGGGTEEEEEEECTTS
T ss_pred eCCCCEEEEeecCCC-cccceEECCCCC-------------------------------EEEEEeCCCCeEEEEEecCCC
Confidence 666666543322111 123333443322 1111 11 122333322 11
Q ss_pred c------------cccCCCceEEEEEcCCCcEEEE-eCCCeEEEEcCCCCeeEEeecCCC------cEEEEE--ecCCEE
Q 001245 414 G------------FGDDNRRTEALTTSIDGMIWTG-GANGLLLQWDPNGNRLQDFQYLPF------AVQCLC--TFGSQI 472 (1115)
Q Consensus 414 ~------------l~~h~~~V~aVa~S~Dg~laSG-S~DgtIklWD~tG~~l~tl~gH~~------~V~sla--~dG~~L 472 (1115)
. +.++ ..+..++++++|.++.+ ..++.|.+||.+|+.+..+..+.. .+.+++ +||+.|
T Consensus 216 ~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L 294 (333)
T 2dg1_A 216 VTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQL 294 (333)
T ss_dssp SSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEE
T ss_pred cCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEE
Confidence 1 1111 35678999999997655 457899999999988888865543 577777 578888
Q ss_pred Eeeeccc
Q 001245 473 WVGYMNG 479 (1115)
Q Consensus 473 aSGs~DG 479 (1115)
+.++.++
T Consensus 295 ~v~~~~g 301 (333)
T 2dg1_A 295 IICSNDI 301 (333)
T ss_dssp EEEEECG
T ss_pred EEEeCcc
Confidence 8777653
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.18 E-value=1.9e-09 Score=120.93 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=68.5
Q ss_pred eEEEEEcCCCcEEEEeCC------C---eEEEEcCCCCeeEEeecCCCcEEEEEecCCEEEeeecc--------cEEEEE
Q 001245 422 TEALTTSIDGMIWTGGAN------G---LLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGYMN--------GIVQVL 484 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~D------g---tIklWD~tG~~l~tl~gH~~~V~sla~dG~~LaSGs~D--------GtIrlW 484 (1115)
+..++++|||.+++++.+ . .|.+|| +|+. +.+..+ ..+.++.|||++|+.++.+ ..|.+|
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 173 FSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGKE-EKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp TCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTEE-EEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred cccccCCCCeEEEEEecccccccccccccEEEeC-CCce-EEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 445677788833455443 2 344455 5554 444455 6677778999999887744 479999
Q ss_pred eCCCccccccccccCCEEE-EEe-cCCEEEeecCCCceEEeeec
Q 001245 485 DLEGNLLGGWVAHSSPVIK-MAV-GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 485 D~~G~ll~~l~gH~~~V~s-va~-dg~~laSgS~DgtIRlWdl~ 526 (1115)
| .|+......+|...+.+ +.+ || .+++++.|+.++|| +.
T Consensus 250 d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 250 D-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp C-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EE
T ss_pred C-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-Ec
Confidence 9 77665556677777876 665 55 88899999999999 87
No 189
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.17 E-value=7.7e-10 Score=136.06 Aligned_cols=235 Identities=13% Similarity=-0.052 Sum_probs=147.0
Q ss_pred CCceEEEEEcCCCCEEEEE--eCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEE---------EEEEe--CCCcE-E
Q 001245 191 VSSVMCMVGDEASGVVWSG--HRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVL---------SLCIS--SYGDL-W 256 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSG--S~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~---------sVafS--pdG~L-~ 256 (1115)
...+..+++++++-.++++ +.|++.++|....+ .....+.+|...|. +.+++ |||+. +
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--------CCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 5678999999887777777 66899999996421 23556777776666 66666 99863 4
Q ss_pred EEeC--CCcEEEEeCC--C-cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC
Q 001245 257 SGSE--GGGIKIWPWE--A-IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF 331 (1115)
Q Consensus 257 SgS~--DgtIrvWdl~--t-~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd 331 (1115)
..+. +..|.+|++. + ++.. .++... ...|. ..+..+++++++..|+.++.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~--------------~~~~~----------~~~~~~~~spDg~~l~~~~~ 149 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPR-PLTPVS--------------AVGGG----------LRWADPVLLPERGEVWCMAE 149 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCE-ECSCCC--------------CSTTC----------EEEEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCeEEEEcCCCCCCCCCE-eccCCc--------------cCCCC----------ccccCcEECCCCCEEEEEEe
Confidence 3333 4555555654 2 2211 111000 00011 22446677888887776542
Q ss_pred -----------CeEEEEEcCC------ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecc
Q 001245 332 -----------LSFALWDART------RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (1115)
Q Consensus 332 -----------~tI~lWD~~t------g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~ 394 (1115)
.+|.+||+.+ ++... +
T Consensus 150 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-l---------------------------------------------- 182 (662)
T 3azo_A 150 EFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE-L---------------------------------------------- 182 (662)
T ss_dssp EECSSSTTCEEEEEEEEETTSTTTTCGGGSEE-S----------------------------------------------
T ss_pred cccCCCCCCceeEEEEEECCCCccccCCceeE-E----------------------------------------------
Confidence 3577788765 33211 0
Q ss_pred ccceEEeccCcEEEEecccccc-cCCCceEEEEEcCCCc-EEEEeCC--------CeEEEEcCC--C---CeeEEeecCC
Q 001245 395 SRNAIMGAADAVRRVAAKGGFG-DDNRRTEALTTSIDGM-IWTGGAN--------GLLLQWDPN--G---NRLQDFQYLP 459 (1115)
Q Consensus 395 ~~~~~~Gs~d~v~~~~~~g~l~-~h~~~V~aVa~S~Dg~-laSGS~D--------gtIklWD~t--G---~~l~tl~gH~ 459 (1115)
. .+...+..+++||||+ |+.++.| ..|.+||++ | +..+...+|.
T Consensus 183 ---------------------~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 183 ---------------------SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp ---------------------SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred ---------------------EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 0 1112334467889987 6666654 379999995 4 4444455567
Q ss_pred CcEEEEE--ecCCEEEeeeccc--EEEEEeCC-CccccccccccCC--------EEEEEe--cCCEEEeecCCCceEEee
Q 001245 460 FAVQCLC--TFGSQIWVGYMNG--IVQVLDLE-GNLLGGWVAHSSP--------VIKMAV--GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 460 ~~V~sla--~dG~~LaSGs~DG--tIrlWD~~-G~ll~~l~gH~~~--------V~sva~--dg~~laSgS~DgtIRlWd 524 (1115)
..+.+++ +||+++++++.++ .|.+||++ |++.....+|... +.++++ +++++++++. ++++||.
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 8888887 7899888888888 77778875 5544333344332 345554 7889999998 9999996
Q ss_pred ecC
Q 001245 525 VTS 527 (1115)
Q Consensus 525 l~~ 527 (1115)
+..
T Consensus 321 ~d~ 323 (662)
T 3azo_A 321 LDP 323 (662)
T ss_dssp EET
T ss_pred EEC
Confidence 653
No 190
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.16 E-value=1.3e-09 Score=123.93 Aligned_cols=258 Identities=11% Similarity=-0.023 Sum_probs=142.3
Q ss_pred cceEEeecCCCCEEE-----EEEeCCCc-EEEEeC-CCc--EEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccce
Q 001245 232 GEVLSWQAHRGPVLS-----LCISSYGD-LWSGSE-GGG--IKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLS 302 (1115)
Q Consensus 232 ~~~~~l~GH~~~V~s-----VafSpdG~-L~SgS~-Dgt--IrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~ 302 (1115)
.....+..|.+.+.. .+|||||+ |+.++. |++ |.+||+++++..... .++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-------------------~~~~- 80 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-------------------EGRG- 80 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-------------------CSSC-
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-------------------eCCC-
Confidence 346677888777776 89999998 777666 774 788888876543111 1111
Q ss_pred ecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEE--eccCCCCccccccceEEEEec
Q 001245 303 VNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRV--DMSLLPDFAMEDEFKTKIVTS 379 (1115)
Q Consensus 303 ~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v--~~s~~~~~~~~~~~~~~~~~~ 379 (1115)
..+...++++++..|+.++ +..|.+||+.+|+....+..+....... .++++...... +...
T Consensus 81 ---------~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~------~~~~ 145 (388)
T 3pe7_A 81 ---------DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG------IEIR 145 (388)
T ss_dssp ---------BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE------EEEE
T ss_pred ---------CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc------cccc
Confidence 1111234677887777665 5689999999999877766554432211 12332221110 0000
Q ss_pred CCCCcc-ceeeeeeccccceEEeccCcEEEEecc-c---ccccCCCceEEEEEcC-CCc-EEEEeCC------CeEEEEc
Q 001245 380 SKKDKA-QSSFGFFQRSRNAIMGAADAVRRVAAK-G---GFGDDNRRTEALTTSI-DGM-IWTGGAN------GLLLQWD 446 (1115)
Q Consensus 380 ~~~~~~-~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g---~l~~h~~~V~aVa~S~-Dg~-laSGS~D------gtIklWD 446 (1115)
...... .....|.. ....+....+.+|+.. + .+..+...+..++++| ||. |+..+.+ ..|.+||
T Consensus 146 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d 222 (388)
T 3pe7_A 146 REDWVPLTDWKKFHE---FYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN 222 (388)
T ss_dssp GGGCCCCCSHHHHHH---HGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred Ccccccccccchhhh---hhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence 000000 00000000 0000011234444432 1 1223445678899999 987 6655543 3788888
Q ss_pred CCCCeeEEeecCCC--cEEEEE--ecCCEEEeeec-----ccEEEEEeCC-Cc--cccccccccCCEE-----EEEecCC
Q 001245 447 PNGNRLQDFQYLPF--AVQCLC--TFGSQIWVGYM-----NGIVQVLDLE-GN--LLGGWVAHSSPVI-----KMAVGAG 509 (1115)
Q Consensus 447 ~tG~~l~tl~gH~~--~V~sla--~dG~~LaSGs~-----DGtIrlWD~~-G~--ll~~l~gH~~~V~-----sva~dg~ 509 (1115)
.+|..++.+..+.. .+..++ |||++|+..+. ++.|.+||++ |+ .+..+.++..... .+.+||+
T Consensus 223 ~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~ 302 (388)
T 3pe7_A 223 EDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS 302 (388)
T ss_dssp TTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred CCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC
Confidence 87766667766553 466555 79998866543 2359999987 54 3444444211111 3567888
Q ss_pred EEEee---------cCCCceEEeeecC
Q 001245 510 YIFTL---------ANHGGIRGWNVTS 527 (1115)
Q Consensus 510 ~laSg---------S~DgtIRlWdl~~ 527 (1115)
.|+.. +.+..|.+||+.+
T Consensus 303 ~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 303 DAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CC------------CCCCEEEEEETTT
T ss_pred cceeEeeeccccccCCCCEEEEEeccC
Confidence 77633 5567899999865
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.13 E-value=1.1e-09 Score=136.26 Aligned_cols=231 Identities=5% Similarity=-0.086 Sum_probs=141.7
Q ss_pred CceEEEEEcCCCCEEE-----EEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCE--EEEEEeCCCc-EEEEeCCCc
Q 001245 192 SSVMCMVGDEASGVVW-----SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPV--LSLCISSYGD-LWSGSEGGG 263 (1115)
Q Consensus 192 ~~V~~la~s~dg~~La-----SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V--~sVafSpdG~-L~SgS~Dgt 263 (1115)
..+.+++|||||++|| +|+.+.+|++||++++.. .. ..|...+ .+++|+|||+ |+.++.|.+
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~---------~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW---------SK-VDVIEGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB---------CS-SCCBSCCTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC---------cC-CcccCcccccceEEecCCCEEEEEEecCC
Confidence 3578899999999999 777788999999997432 10 1222222 6899999998 788888887
Q ss_pred -------------EEEEeCCCccee--eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEe
Q 001245 264 -------------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWS 328 (1115)
Q Consensus 264 -------------IrvWdl~t~~~~--l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S 328 (1115)
|++|++.++... +.+ ...++. ..+..+..++++..|+.
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-----------------~~~~~~----------~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVH-----------------ERTGDP----------TTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEE-----------------CCCCCT----------TCEEEEEECTTSCCEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEE-----------------ecCCCC----------EEEEEEEECCCCCEEEE
Confidence 999999875421 100 001111 23445566777766554
Q ss_pred ec-CC----eEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc
Q 001245 329 AG-FL----SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA 403 (1115)
Q Consensus 329 ~s-d~----tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~ 403 (1115)
.+ +. .|.+||..+++.......
T Consensus 244 ~~~~~~~~~~l~~~~~~~~~~~~l~~~----------------------------------------------------- 270 (695)
T 2bkl_A 244 YILRGWSENDVYWKRPGEKDFRLLVKG----------------------------------------------------- 270 (695)
T ss_dssp EEEETTTEEEEEEECTTCSSCEEEEEC-----------------------------------------------------
T ss_pred EEeCCCCceEEEEEcCCCCceEEeecC-----------------------------------------------------
Confidence 32 22 355555444432211100
Q ss_pred CcEEEEecccccccCCCceEEEEEcCCCcEEEEe----CCCeEEEEcC-CCCe--eEEeecC--CCcEEEEEe-cCCEEE
Q 001245 404 DAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG----ANGLLLQWDP-NGNR--LQDFQYL--PFAVQCLCT-FGSQIW 473 (1115)
Q Consensus 404 d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS----~DgtIklWD~-tG~~--l~tl~gH--~~~V~sla~-dG~~La 473 (1115)
...+....+ ++|.++..+ .++.|.+||+ +++. .+++..| ...|.++++ ++.+++
T Consensus 271 ---------------~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~ 334 (695)
T 2bkl_A 271 ---------------VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSL 334 (695)
T ss_dssp ---------------SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEE
T ss_pred ---------------CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEE
Confidence 001111122 222233222 3688999999 5553 3455544 345777774 567888
Q ss_pred eeecccEEEEEeC--CCccccccccc-cCCEEEEE--ecCCEEE----eecCCCceEEeeecCC
Q 001245 474 VGYMNGIVQVLDL--EGNLLGGWVAH-SSPVIKMA--VGAGYIF----TLANHGGIRGWNVTSP 528 (1115)
Q Consensus 474 SGs~DGtIrlWD~--~G~ll~~l~gH-~~~V~sva--~dg~~la----SgS~DgtIRlWdl~~p 528 (1115)
++..|++.+||.. +|+.+..+..| .+.|.+++ .+++.++ |....++|.+||+.+.
T Consensus 335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 8889999888864 47766667666 56666665 3677666 5556789999998763
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.12 E-value=9.7e-09 Score=115.94 Aligned_cols=257 Identities=11% Similarity=-0.016 Sum_probs=158.2
Q ss_pred CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeecc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 149 GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKG-VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 149 ~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G-~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
.+++|.+||.+++...... ........ ......++++ ++++.++...+++|.+||..++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i---------------~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---- 74 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV---------------FYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---- 74 (328)
T ss_dssp CCBEEEEEETTTTEEECSH---------------HHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC----
T ss_pred CCceEEEEECCCCEEhhhh---------------HhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc----
Confidence 3789999999988755420 00000000 1234567775 4566677777899999999873
Q ss_pred CCCCcceEEeecCCCCEEEEEEeCCCcEEEEe-CCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecce
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS-EGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGF 306 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS-~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~ 306 (1115)
+.+.++. .......|+|+++|+|+.+. .+++|.+||+++++....+ .+. .. .+.
T Consensus 75 ----~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i-----------------~~g-~~--~~~ 129 (328)
T 3dsm_A 75 ----KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI-----------------ECP-DM--DME 129 (328)
T ss_dssp ----CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE-----------------ECT-TC--CTT
T ss_pred ----EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE-----------------EcC-Cc--ccc
Confidence 3345554 34668999999999876444 8999999999886543111 000 00 000
Q ss_pred eeeecCCeEEEEEeCCCCEEEeec---CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCC
Q 001245 307 SSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKD 383 (1115)
Q Consensus 307 ~~~~s~~v~~las~~~~~~v~S~s---d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~ 383 (1115)
. .....++. ++.+++.+. +++|.+||+.+++.++++.....
T Consensus 130 ~----~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~------------------------------ 173 (328)
T 3dsm_A 130 S----GSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ------------------------------ 173 (328)
T ss_dssp T----CBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC------------------------------
T ss_pred C----CCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC------------------------------
Confidence 0 01112333 234444432 57899999999987765521100
Q ss_pred ccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeC-C----------CeEEEEcC-CCCe
Q 001245 384 KAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGA-N----------GLLLQWDP-NGNR 451 (1115)
Q Consensus 384 ~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~-D----------gtIklWD~-tG~~ 451 (1115)
...+++++||+++.++. + +.|.+||. +++.
T Consensus 174 --------------------------------------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v 215 (328)
T 3dsm_A 174 --------------------------------------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV 215 (328)
T ss_dssp --------------------------------------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred --------------------------------------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence 11245567777654443 2 68999999 7887
Q ss_pred eEEeecC-CCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccc-cc-ccccCCEEEEEec---CCEEEee----cCCC
Q 001245 452 LQDFQYL-PFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLG-GW-VAHSSPVIKMAVG---AGYIFTL----ANHG 518 (1115)
Q Consensus 452 l~tl~gH-~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~-~l-~gH~~~V~sva~d---g~~laSg----S~Dg 518 (1115)
+.++... ......|+ +||++|+++.. +|.+||.+ +++.. .+ ..+......|+++ +...++. ..++
T Consensus 216 ~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 216 EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp EEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred EEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 7777542 23567777 57999998765 89999986 55432 22 2224567788863 3455565 6789
Q ss_pred ceEEeeec
Q 001245 519 GIRGWNVT 526 (1115)
Q Consensus 519 tIRlWdl~ 526 (1115)
+|.+||..
T Consensus 294 ~V~v~d~~ 301 (328)
T 3dsm_A 294 IVYRYSPQ 301 (328)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 99999964
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.11 E-value=2.2e-07 Score=101.02 Aligned_cols=266 Identities=11% Similarity=0.090 Sum_probs=158.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEE-EEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~-SgS~DgtIrvWdl 269 (1115)
...+.+++++++|.+.++...++.|.+||..+ .. ....+..+...+.+|+++++|.|+ +...++.|..||.
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-~~-------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLDG-KI-------TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCCC-Ce-------EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 35688999999999887777789999999873 21 111223456789999999999975 4455788999997
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
+...... .+... ......++.++++...++.. ++.|.+||. +++.....
T Consensus 86 ~g~~~~~-------------------~~~~~----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~ 135 (299)
T 2z2n_A 86 KGIIKEY-------------------TLPNP----------DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE 135 (299)
T ss_dssp TSCEEEE-------------------ECSST----------TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred CCcEEEE-------------------eCCCc----------CCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec
Confidence 5211110 00000 13456677777665555443 468999998 66654322
Q ss_pred ec-CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEEEeccccc-----ccCCCc
Q 001245 349 NI-DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGGF-----GDDNRR 421 (1115)
Q Consensus 349 ~~-~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~g~l-----~~h~~~ 421 (1115)
.. .......+.+. +++...++.. .+.+.+++..+.+ ......
T Consensus 136 ~~~~~~~~~~i~~~-------------------------------~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 136 LPNKGSYPSFITLG-------------------------------SDNALWFTENQNNAIGRITESGDITEFKIPTPASG 184 (299)
T ss_dssp CSSTTCCEEEEEEC-------------------------------TTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCCCCCCCceEEEc-------------------------------CCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCc
Confidence 11 11111222222 2221111111 1234444332221 122345
Q ss_pred eEEEEEcCCCcEEEEe-CCCeEEEEcCCCCeeEE-eecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCcccc-cccc
Q 001245 422 TEALTTSIDGMIWTGG-ANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLG-GWVA 496 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS-~DgtIklWD~tG~~l~t-l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~-~l~g 496 (1115)
+..++++++|.++.+. .++.|.+||.+|+.... +..+...+.+|+ ++|...++...++.|.+||.+|+... .+.+
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~ 264 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQI 264 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSS
T ss_pred ceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCC
Confidence 7789999999987665 47899999997764432 233456788888 46775555447789999998765322 1335
Q ss_pred ccCCEEEEEe-cCCEEEeecCCCceEEeeec
Q 001245 497 HSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 497 H~~~V~sva~-dg~~laSgS~DgtIRlWdl~ 526 (1115)
+...+.++++ +|+..++.+. +.|..++..
T Consensus 265 ~~~~~~~i~~~~g~l~v~~~~-~~l~~~~~~ 294 (299)
T 2z2n_A 265 KSAEPHGICFDGETIWFAMEC-DKIGKLTLI 294 (299)
T ss_dssp SSCCEEEEEECSSCEEEEETT-TEEEEEEEC
T ss_pred CCCccceEEecCCCEEEEecC-CcEEEEEcC
Confidence 5567888775 5555555554 455555543
No 194
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=2.4e-09 Score=133.44 Aligned_cols=245 Identities=9% Similarity=-0.103 Sum_probs=141.2
Q ss_pred eeEEEEEe-CCeEEE-----e--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 134 FLRTIVCT-EEQLWA-----G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~a-----g--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
.+..++.+ +++++| + .+.+|++||++++..... + ... ......++|+|||+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-------------~------~~~-~~~~~~~~wspDg~~ 181 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-------------D------VIE-GGKYATPKWTPDSKG 181 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-------------C------CBS-CCTTCCCEECTTSSE
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-------------c------ccC-cccccceEEecCCCE
Confidence 34555555 556655 2 246899999998875511 0 011 011146889999999
Q ss_pred EEEEeCCCe-------------EEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC----cEEEE
Q 001245 206 VWSGHRDGR-------------IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG----GIKIW 267 (1115)
Q Consensus 206 LaSGS~Dgt-------------IrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg----tIrvW 267 (1115)
|+.++.|.+ |++|++.++... ...+....+|...+.+++|||||+ |+.++.++ .|.+|
T Consensus 182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~----~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK----DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG----CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEE
T ss_pred EEEEEecCCCCCccccCCCCCEEEEEECCCCchh----ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEE
Confidence 999999887 999999874310 012223345677899999999998 76555444 55555
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec----CCeEEEEEcCCcc
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG----FLSFALWDARTRE 343 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s----d~tI~lWD~~tg~ 343 (1115)
+..+++.. . +..+. ......+.. ++..++... +..|.+||+.+++
T Consensus 258 ~~~~~~~~-~-------------------l~~~~----------~~~~~~~~~-~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 258 RPGEKDFR-L-------------------LVKGV----------GAKYEVHAW-KDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp CTTCSSCE-E-------------------EEECS----------SCCEEEEEE-TTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCCCceE-E-------------------eecCC----------CceEEEEec-CCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 54333211 0 00011 011112222 222222222 3567888876543
Q ss_pred E--EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCc
Q 001245 344 L--LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR 421 (1115)
Q Consensus 344 l--l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~ 421 (1115)
. .+.+..+ .+...
T Consensus 307 ~~~~~~l~~~-----------------------------------------------------------------~~~~~ 321 (695)
T 2bkl_A 307 RASWKEIVPE-----------------------------------------------------------------DSSAS 321 (695)
T ss_dssp GGGCEEEECC-----------------------------------------------------------------CSSCE
T ss_pred ccCCeEEecC-----------------------------------------------------------------CCCCe
Confidence 1 0111000 00112
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEcC--CCCeeEEeecC-CCcEEEEE--ecCCEEE----eeecccEEEEEeCCCcccc
Q 001245 422 TEALTTSIDGMIWTGGANGLLLQWDP--NGNRLQDFQYL-PFAVQCLC--TFGSQIW----VGYMNGIVQVLDLEGNLLG 492 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~DgtIklWD~--tG~~l~tl~gH-~~~V~sla--~dG~~La----SGs~DGtIrlWD~~G~ll~ 492 (1115)
+..++++.+..++++..|++.+||.+ +|+.++++..+ ...|.+++ ++|+.|+ +....++|.+||+.+....
T Consensus 322 l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 322 LLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 33455553333678889999888865 68888888765 56677666 6788777 3345689999998733344
Q ss_pred cccccc
Q 001245 493 GWVAHS 498 (1115)
Q Consensus 493 ~l~gH~ 498 (1115)
.++.+.
T Consensus 402 ~l~~~~ 407 (695)
T 2bkl_A 402 LWAKVD 407 (695)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 455444
No 195
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.11 E-value=1.1e-09 Score=118.86 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=37.7
Q ss_pred ccCcceEEEEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 674 ~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
+..++++.+++.+.+..|+++|+||.+.....+.|.+++..|.+.+
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~ 165 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCETEDMGKNIQTILNRT 165 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSS
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCChHHHHHHHHHHHHHH
Confidence 4568999999999999999999999987554456788888887643
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.11 E-value=1.9e-08 Score=110.89 Aligned_cols=236 Identities=9% Similarity=-0.021 Sum_probs=147.8
Q ss_pred CCceEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCCCCCCCCCcceEEee-----cCCCCEEEEEEeCC-CcEEE
Q 001245 191 VSSVMCMVGDEASGVVWS-------GHRDGRIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSY-GDLWS 257 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaS-------GS~DgtIrlWdl~~~~~~~~~~~~~~~~l~-----GH~~~V~sVafSpd-G~L~S 257 (1115)
.....+++++++|.++++ +..++.|.+||..++. ...+. +|...+.+++++++ |+|+-
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v 87 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---------KTVICKPEVNGYGGIPAGCQCDRDANQLFV 87 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---------EEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---------EEEEEecccCCCCCCCceEEEecCCCcEEE
Confidence 345678999999998888 6889999999987532 22332 36678999999999 88776
Q ss_pred EeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCC-----
Q 001245 258 GSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFL----- 332 (1115)
Q Consensus 258 gS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~----- 332 (1115)
++.++.|.+||.+ ++....... . .. + .+...+..++.++++...++....
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~----------------~--~~---~---~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 142 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKK----------------D--SE---G---RRMQGCNDCAFDYEGNLWITAPAGEVAPA 142 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSB----------------C--TT---S---CBCBCCCEEEECTTSCEEEEECBCBCTTS
T ss_pred EECCCCEEEEeCC-CCEEEEEec----------------c--CC---C---ccccCCcCEEECCCCCEEEEecCcccccc
Confidence 6656689999987 443210000 0 00 0 001234566777766544333211
Q ss_pred -----------eEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEe
Q 001245 333 -----------SFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMG 401 (1115)
Q Consensus 333 -----------tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~G 401 (1115)
.|..||.. ++....
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-g~~~~~------------------------------------------------------ 167 (314)
T 1pjx_A 143 DYTRSMQEKFGSIYCFTTD-GQMIQV------------------------------------------------------ 167 (314)
T ss_dssp CCCBTTSSSCEEEEEECTT-SCEEEE------------------------------------------------------
T ss_pred cccccccCCCCeEEEECCC-CCEEEe------------------------------------------------------
Confidence 12222211 111100
Q ss_pred ccCcEEEEecccccccCCCceEEEEEc----CCCc-EEE-EeCCCeEEEEcC--CCC-----eeEEeecCC-CcEEEEE-
Q 001245 402 AADAVRRVAAKGGFGDDNRRTEALTTS----IDGM-IWT-GGANGLLLQWDP--NGN-----RLQDFQYLP-FAVQCLC- 466 (1115)
Q Consensus 402 s~d~v~~~~~~g~l~~h~~~V~aVa~S----~Dg~-laS-GS~DgtIklWD~--tG~-----~l~tl~gH~-~~V~sla- 466 (1115)
..+......++++ +||. ++. .+.++.|.+||. +|+ ....+.++. ..+..++
T Consensus 168 --------------~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 168 --------------DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp --------------EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred --------------ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 0011124556777 8884 554 456789999997 354 233344443 5567777
Q ss_pred -ecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEe--cCCEE-EeecCCCceEEeeecCCC
Q 001245 467 -TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAV--GAGYI-FTLANHGGIRGWNVTSPG 529 (1115)
Q Consensus 467 -~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~--dg~~l-aSgS~DgtIRlWdl~~p~ 529 (1115)
++|.+.++...++.|.+||.+ |+.+..+..+...+.++++ +|+.| ++.+.++.|..|++..++
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 468777776778899999998 8888888778788999985 67745 455667889999987654
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.11 E-value=1e-08 Score=113.45 Aligned_cols=212 Identities=11% Similarity=0.041 Sum_probs=140.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCC-CCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-GPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~-~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
.+++|++|+.|+.|.+||.++| +.+.++..|. ..+.+++++|+|+++. +.++.|..||. +++....+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK--------EIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT--------EEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC--------eEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcC
Confidence 4689999999999999999764 4566777665 4789999999999544 56888999998 6654432211
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC--CeEEEEEcCCccEEEEEecCCceeeEE
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDGQIENRV 358 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd--~tI~lWD~~tg~ll~tl~~~~~~~~~v 358 (1115)
. .. ..+......+++..+++... ..+..+|. +|+.+..+......
T Consensus 74 ~------------------~~----------~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---- 120 (276)
T 3no2_A 74 P------------------AG----------CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---- 120 (276)
T ss_dssp C------------------TT----------CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC----
T ss_pred C------------------CC----------ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC----
Confidence 0 00 12233445566666666443 45556664 67766655321100
Q ss_pred eccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEe
Q 001245 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGG 437 (1115)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS 437 (1115)
..+......++..++|. +++.+
T Consensus 121 ---------------------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 121 ---------------------------------------------------------ERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp ---------------------------------------------------------SSGGGSCSCCEECTTSCEEEEET
T ss_pred ---------------------------------------------------------CcccccccCceECCCCCEEEEec
Confidence 00000112234566776 67888
Q ss_pred CCCeEEEEcCCCCeeEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Ccccccccccc------CCEEEEE--e
Q 001245 438 ANGLLLQWDPNGNRLQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHS------SPVIKMA--V 506 (1115)
Q Consensus 438 ~DgtIklWD~tG~~l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~------~~V~sva--~ 506 (1115)
.++.|..||.+|+.+-++..+. .+.++. ++|..+++++.+++|..+|.+ |+.+.++..+. ..+.+++ .
T Consensus 144 ~~~~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 144 ATSEVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TTTEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 8999999999999999988653 333444 679999999989999999998 99877775442 2256665 3
Q ss_pred cCCEEEee
Q 001245 507 GAGYIFTL 514 (1115)
Q Consensus 507 dg~~laSg 514 (1115)
+|..+++.
T Consensus 223 ~G~i~v~~ 230 (276)
T 3no2_A 223 NGGLYICN 230 (276)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 67777665
No 198
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.10 E-value=5.5e-10 Score=128.74 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=83.4
Q ss_pred ecccceEEEEEEeCCCCCCc-----hhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHH
Q 001245 549 MENLKILAGTWNVGQGRASQ-----DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMI 623 (1115)
Q Consensus 549 ~~~irI~v~TWNv~~~~~~~-----~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l 623 (1115)
....++-|.||||+|..... ..+.+||.. .+||| |+|||+.... ...+
T Consensus 115 ~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~--~~PDI--V~LQEv~~~~-----------------------~~~l 167 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN--VNPDI--LFLQEVVDRD-----------------------LAPI 167 (362)
T ss_dssp TTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH--HCCSE--EEEEEECSTT-----------------------CHHH
T ss_pred CCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH--cCCCE--EEEEcCChhH-----------------------hHHH
Confidence 34568999999998654321 346677753 45775 7899984211 1122
Q ss_pred hcccCCCCceEEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccch
Q 001245 624 GKILDDGSTFERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (1115)
Q Consensus 624 ~~~L~~~~~y~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~ 703 (1115)
.+.+. .|.......-.+-.+++|.|+.+. .+....+. +.+.....+++.+++.+.+..|+++|.||.+...
T Consensus 168 ~~~~~---~y~~~~~~~~~~~G~aIlsk~~i~----~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~ 238 (362)
T 4gew_A 168 DKLQS---LYKIYYSNKGCQYYTAILVSKMFD----VEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTRE 238 (362)
T ss_dssp HGGGG---TEEEEESSTTSSSEEEEEEETTEE----EEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred HHhcC---CceEEeCCCCCCceEEEEEeccCc----cccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCcccc
Confidence 23221 244444444444456677776331 12221111 1122234678888999999999999999999888
Q ss_pred hHHHHHHHHHHHHHhc
Q 001245 704 AVNRRNADFDHVYRTM 719 (1115)
Q Consensus 704 ~~~~Rn~d~~~I~~~l 719 (1115)
...+|.+++..+...+
T Consensus 239 ~~~~R~~Q~~~l~~~~ 254 (362)
T 4gew_A 239 HRPQRCAQFGFCMDKV 254 (362)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHh
Confidence 8888998888887654
No 199
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.10 E-value=9.3e-09 Score=128.30 Aligned_cols=231 Identities=10% Similarity=-0.013 Sum_probs=143.3
Q ss_pred ceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCCCCCCCCcceE-EeecCCCCEEEEEEeCCCc-EEEEeCCCc--
Q 001245 193 SVMCMVGDEASGVVWSGHRDG-----RIMCWKMNARLLDSDDGFGEVL-SWQAHRGPVLSLCISSYGD-LWSGSEGGG-- 263 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~Dg-----tIrlWdl~~~~~~~~~~~~~~~-~l~GH~~~V~sVafSpdG~-L~SgS~Dgt-- 263 (1115)
.+..++|||||++||.++.++ +|++||++++.. .. ++.+ ..+.+++|+|||+ |+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~--------~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE--------LPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE--------EEEEEEE--ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--------CcccccC--cccceEEEEeCCCEEEEEEECCccc
Confidence 577899999999999877654 899999997431 11 2222 2367899999998 788887776
Q ss_pred --------------EEEEeCCCccee--eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEE
Q 001245 264 --------------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW 327 (1115)
Q Consensus 264 --------------IrvWdl~t~~~~--l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~ 327 (1115)
|++|++.++... +.+. ...+. .....+..++++..|+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~-----------------~~~~~----------~~~~~~~~SpDg~~l~ 248 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAE-----------------FPDEP----------KWMGGAELSDDGRYVL 248 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC-----------------CTTCT----------TCEEEEEECTTSCEEE
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEec-----------------cCCCC----------eEEEEEEEcCCCCEEE
Confidence 999999875421 1000 00011 1133455566666655
Q ss_pred eec------CCeEEEEEcCC------cc-EEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeecc
Q 001245 328 SAG------FLSFALWDART------RE-LLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (1115)
Q Consensus 328 S~s------d~tI~lWD~~t------g~-ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~ 394 (1115)
..+ +..|.+||+.+ +. .++.+..
T Consensus 249 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-------------------------------------------- 284 (710)
T 2xdw_A 249 LSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID-------------------------------------------- 284 (710)
T ss_dssp EEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC--------------------------------------------
T ss_pred EEEEccCCCccEEEEEECcccccccCCccceEEeeC--------------------------------------------
Confidence 432 34688888765 32 1111110
Q ss_pred ccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeC----CCeEEEEcC-CCC--eeEEeecCCC--cEEE
Q 001245 395 SRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDP-NGN--RLQDFQYLPF--AVQC 464 (1115)
Q Consensus 395 ~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~----DgtIklWD~-tG~--~l~tl~gH~~--~V~s 464 (1115)
+...+.. .+++||. |+..+. ++.|.+||+ ++. ..+++..|.. .|.+
T Consensus 285 -----------------------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ 340 (710)
T 2xdw_A 285 -----------------------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW 340 (710)
T ss_dssp -----------------------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEE
T ss_pred -----------------------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEE
Confidence 0001111 2334443 443333 346999999 454 3567777655 5777
Q ss_pred EE-e-cCCEEEeeecccE--EEEEeC-CCccccccccccCCEEEEEe--cCCEEE----eecCCCceEEeeecCC
Q 001245 465 LC-T-FGSQIWVGYMNGI--VQVLDL-EGNLLGGWVAHSSPVIKMAV--GAGYIF----TLANHGGIRGWNVTSP 528 (1115)
Q Consensus 465 la-~-dG~~LaSGs~DGt--IrlWD~-~G~ll~~l~gH~~~V~sva~--dg~~la----SgS~DgtIRlWdl~~p 528 (1115)
++ . ++.+++++..|+. |++||+ +|+.+..+..|.+.|.++++ +++.++ |....++|.+||+.+.
T Consensus 341 ~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 341 VACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 77 3 5667788888874 566787 58877888888888888875 666554 3345688999998764
No 200
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.09 E-value=4.4e-10 Score=122.25 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=76.5
Q ss_pred eEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhcccCCCCce
Q 001245 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGSTF 633 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L~~~~~y 633 (1115)
+-|+||||++.....+.+.++|.. .+|| ||+|||+......+ ..+.+. . .++.|
T Consensus 1 lrv~t~Nv~~~~~~~~~i~~~i~~--~~~D--ii~LQE~~~~~~~~-------------------~~~~l~-~--~gy~~ 54 (268)
T 1ako_A 1 MKFVSFNINGLRARPHQLEAIVEK--HQPD--VIGLQETKVHDDMF-------------------PLEEVA-K--LGYNV 54 (268)
T ss_dssp CEEEEEECSCGGGCHHHHHHHHHH--HCCS--EEEEECCCCCGGGC-------------------CHHHHH-H--TTCEE
T ss_pred CEEEEEehhHHHHHHHHHHHHHHH--cCCC--EEEEEeccCChhhC-------------------CHhHhc-c--CCCcE
Confidence 358999998765444567777753 4577 47899996532100 011121 1 13333
Q ss_pred EEEeeeccccEEEEEEEeccccCccCceeeeeeeeeccc--cccCcceEEEEEEEecEEEEEEeecccccch-----hHH
Q 001245 634 ERVGSRQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGR--AIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE-----AVN 706 (1115)
Q Consensus 634 ~~v~s~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g--~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~-----~~~ 706 (1115)
.... .-.+--+++|.|..+. .+. .++.+ ...+++++.+++.+.+..|+++|+||.+... ..+
T Consensus 55 ~~~~--~~~~~G~ailsr~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~ 123 (268)
T 1ako_A 55 FYHG--QKGHYGVALLTKETPI----AVR-----RGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFP 123 (268)
T ss_dssp EEEE--ETTEEEEEEEESSCCS----EEE-----ESSTTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHH
T ss_pred EEeC--CCCcceEEEEEecCcc----eee-----eCCCCcccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHH
Confidence 3332 2233345566776542 111 23321 1346788999999988999999999987753 345
Q ss_pred HHHHHHHHHHHhc
Q 001245 707 RRNADFDHVYRTM 719 (1115)
Q Consensus 707 ~Rn~d~~~I~~~l 719 (1115)
.|.+.+..|.+.+
T Consensus 124 ~r~~~~~~l~~~~ 136 (268)
T 1ako_A 124 AKAQFYQNLQNYL 136 (268)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776554
No 201
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.09 E-value=1.4e-08 Score=109.57 Aligned_cols=231 Identities=10% Similarity=-0.042 Sum_probs=144.6
Q ss_pred ceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCC
Q 001245 193 SVMCMVGDEASGVVW-SGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 193 ~V~~la~s~dg~~La-SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~ 270 (1115)
...+++++++|.+.+ +.+.++.|.+|+..++. ...+ .++...+.+|+++++|.|+.+..++.|.+||.+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---------TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---------cceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC
Confidence 567899999999777 55788999999976521 1111 234456789999999997654448899999987
Q ss_pred CcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 271 AIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 271 t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
+..... + ... . ......++.++++..+++.. ++.|.+||..+......
T Consensus 96 ~~~~~~-~-----------------~~~-~----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-- 144 (270)
T 1rwi_B 96 SNNQTV-L-----------------PFD-G----------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-- 144 (270)
T ss_dssp CSCCEE-C-----------------CCC-S----------CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--
T ss_pred CceEee-e-----------------ecC-C----------cCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--
Confidence 643210 0 000 0 02345677777665444432 45677776432211100
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
.......+..+++++
T Consensus 145 -----------------------------------------------------------------~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 145 -----------------------------------------------------------------PFTGLNDPDGVAVDN 159 (270)
T ss_dssp -----------------------------------------------------------------CCCSCCSCCCEEECT
T ss_pred -----------------------------------------------------------------ccccCCCceeEEEeC
Confidence 000011344577888
Q ss_pred CCcEEEE-eCCCeEEEEcCCCCeeEE-eecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccc-cccCCEEEE
Q 001245 430 DGMIWTG-GANGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWV-AHSSPVIKM 504 (1115)
Q Consensus 430 Dg~laSG-S~DgtIklWD~tG~~l~t-l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~-gH~~~V~sv 504 (1115)
+|.++.+ ..++.|.+||.++..... ...+...+.+|+ ++|.+.++...++.|.+||.++....... .+...+.++
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i 239 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE
Confidence 8887544 457899999996543333 333446678888 45755556566889999998865433332 344568888
Q ss_pred Ee--cCCEEEeecCCCceEEeeecCC
Q 001245 505 AV--GAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 505 a~--dg~~laSgS~DgtIRlWdl~~p 528 (1115)
++ +|+..++.+.+++|+++++..+
T Consensus 240 ~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 240 AVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EECCCCCEEEEECCCCEEEEEcCCCc
Confidence 86 5777888889999999997653
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.09 E-value=1.5e-08 Score=114.42 Aligned_cols=237 Identities=11% Similarity=0.016 Sum_probs=149.1
Q ss_pred cceeeEEEEEeCCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 131 IGCFLRTIVCTEEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 131 ~~~~l~~l~~~~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
.|...+.++.+++.+|++ .+++|.+||.+++....+ + . . ......+++++++++.++
T Consensus 42 lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~-----------------i-~--~-~~~p~~i~~~~~g~lyv~ 100 (328)
T 3dsm_A 42 LGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGR-----------------I-T--G-FTSPRYIHFLSDEKAYVT 100 (328)
T ss_dssp CBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEE-----------------E-E--C-CSSEEEEEEEETTEEEEE
T ss_pred cCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEE-----------------c-C--C-CCCCcEEEEeCCCeEEEE
Confidence 344556677788899884 568999999998876553 1 1 1 345678999888866666
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCcceEEeecCC-----CCEEEEEEeCCCcEEEEe--CCCcEEEEeCCCcceeeccCCC
Q 001245 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHR-----GPVLSLCISSYGDLWSGS--EGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 209 GS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~-----~~V~sVafSpdG~L~SgS--~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
...+++|.+||+.+++ ...++.... .....|++ .+++|+.+. .+++|.+||+++++....+
T Consensus 101 ~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--- 168 (328)
T 3dsm_A 101 QIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--- 168 (328)
T ss_dssp EBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE---
T ss_pred ECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE---
Confidence 5589999999998732 233343222 14457788 556676554 4899999999886543111
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-----------CeEEEEEcCCccEEEEEec
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----------LSFALWDARTRELLKVFNI 350 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-----------~tI~lWD~~tg~ll~tl~~ 350 (1115)
.. + .....+++++++..++++.. ..|.+||..++++.+++..
T Consensus 169 --------------~~-g------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 169 --------------TI-G------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp --------------EC-S------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred --------------Ec-C------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 00 0 01123445555554444322 4688999888876654311
Q ss_pred CCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCC
Q 001245 351 DGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSID 430 (1115)
Q Consensus 351 ~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~D 430 (1115)
. .......++++||
T Consensus 222 ~------------------------------------------------------------------~g~~p~~la~~~d 235 (328)
T 3dsm_A 222 K------------------------------------------------------------------LGDWPSEVQLNGT 235 (328)
T ss_dssp C------------------------------------------------------------------TTCCCEEEEECTT
T ss_pred C------------------------------------------------------------------CCCCceeEEEecC
Confidence 0 0013456788887
Q ss_pred Cc-EEEEeCCCeEEEEcC-CCCeeEE--eecCCCcEEEEE--ecCCEEEee-----ecccEEEEEeCCCccccccc
Q 001245 431 GM-IWTGGANGLLLQWDP-NGNRLQD--FQYLPFAVQCLC--TFGSQIWVG-----YMNGIVQVLDLEGNLLGGWV 495 (1115)
Q Consensus 431 g~-laSGS~DgtIklWD~-tG~~l~t--l~gH~~~V~sla--~dG~~LaSG-----s~DGtIrlWD~~G~ll~~l~ 495 (1115)
+. ++.+.. +|.+||. +++.... +..+......|+ |++..|+++ ..+++|.+||.+|+++.++.
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 66 555443 8999999 6665421 222235677777 445555555 46899999999998877664
No 203
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.07 E-value=1.8e-08 Score=110.88 Aligned_cols=214 Identities=14% Similarity=0.131 Sum_probs=136.9
Q ss_pred EEEe-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001245 145 LWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNAR 223 (1115)
Q Consensus 145 l~ag-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~ 223 (1115)
+|++ .++.|..||.+++ ... +. .+ ...+.+++++++|+++++.+.++.|.+||..++
T Consensus 43 ~~~~~~~~~i~~~~~~~~--~~~-----------------~~--~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g 100 (296)
T 3e5z_A 43 IFSDVRQNRTWAWSDDGQ--LSP-----------------EM--HP-SHHQNGHCLNKQGHLIACSHGLRRLERQREPGG 100 (296)
T ss_dssp EEEEGGGTEEEEEETTSC--EEE-----------------EE--SS-CSSEEEEEECTTCCEEEEETTTTEEEEECSTTC
T ss_pred EEEeCCCCEEEEEECCCC--eEE-----------------EE--CC-CCCcceeeECCCCcEEEEecCCCeEEEEcCCCC
Confidence 5554 6789999999876 221 11 22 456889999999999988888899999999653
Q ss_pred CCCCCCCCcceEEe-e---cC-CCCEEEEEEeCCCcEE-EEeCCC---------------cEEEEeCCC-cceeeccCCC
Q 001245 224 LLDSDDGFGEVLSW-Q---AH-RGPVLSLCISSYGDLW-SGSEGG---------------GIKIWPWEA-IEKALSLKPE 281 (1115)
Q Consensus 224 ~~~~~~~~~~~~~l-~---GH-~~~V~sVafSpdG~L~-SgS~Dg---------------tIrvWdl~t-~~~~l~~~~~ 281 (1115)
. ...+ . +. ...+..|+++|+|.|+ |.+.+| .-+||.++. +...
T Consensus 101 ~---------~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~------ 165 (296)
T 3e5z_A 101 E---------WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLS------ 165 (296)
T ss_dssp C---------EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEE------
T ss_pred c---------EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEE------
Confidence 2 1222 1 11 2356789999999964 522111 124554432 2111
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcC-CccE-E--EEEecCCceee
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDAR-TREL-L--KVFNIDGQIEN 356 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~-tg~l-l--~tl~~~~~~~~ 356 (1115)
. +..+. .....+++++++..+++.. ++.|.+||+. +|++ . +.+
T Consensus 166 -----~---------~~~~~----------~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-------- 213 (296)
T 3e5z_A 166 -----A---------PIRDR----------VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-------- 213 (296)
T ss_dssp -----E---------EECCC----------SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--------
T ss_pred -----E---------eecCC----------CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--------
Confidence 0 00011 2234577788887776554 4689999975 4443 1 111
Q ss_pred EEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEE
Q 001245 357 RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTG 436 (1115)
Q Consensus 357 ~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSG 436 (1115)
. .+...+..++++++|.|+.+
T Consensus 214 ----------------------~-------------------------------------~~~~~p~~i~~d~~G~l~v~ 234 (296)
T 3e5z_A 214 ----------------------T-------------------------------------VEPGKTDGLRVDAGGLIWAS 234 (296)
T ss_dssp ----------------------C-------------------------------------CSSSCCCSEEEBTTSCEEEE
T ss_pred ----------------------e-------------------------------------CCCCCCCeEEECCCCCEEEE
Confidence 0 00112334778899998877
Q ss_pred eCCCeEEEEcCCCCeeEEeecCCCcEEEEE---ecCCEEEeeecccEEEEEeCCCc
Q 001245 437 GANGLLLQWDPNGNRLQDFQYLPFAVQCLC---TFGSQIWVGYMNGIVQVLDLEGN 489 (1115)
Q Consensus 437 S~DgtIklWD~tG~~l~tl~gH~~~V~sla---~dG~~LaSGs~DGtIrlWD~~G~ 489 (1115)
. ++.|.+||.+|+++..+..+.. +++++ ++|+.|++++.++.. -++.+.+
T Consensus 235 ~-~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~-~~~~~~~ 287 (296)
T 3e5z_A 235 A-GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFW-SIETNVR 287 (296)
T ss_dssp E-TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEE-EEECSCC
T ss_pred c-CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEE-EEEcccc
Confidence 7 8899999999999999988877 88777 467899999988643 3455433
No 204
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.98 E-value=5.4e-08 Score=121.39 Aligned_cols=242 Identities=11% Similarity=0.037 Sum_probs=143.9
Q ss_pred eeEEEEEe-CCeEEE--eC----C-CCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 134 FLRTIVCT-EEQLWA--GG----E-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~----D-~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
.+..++.+ +++++| .. | .+|++||++++..... . .. ...+..++|+|||+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~--~~-~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------V--LE-RVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------E--EE-EECSCCEEECTTSSE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------c--cc-CcccceEEEEeCCCE
Confidence 34455555 555555 21 1 2899999998875531 1 11 112557899999999
Q ss_pred EEEEeCCCe----------------EEEEECCCCCCCCCCCCcceEEee--cCCCCEEEEEEeCCCc-EEEEeC-----C
Q 001245 206 VWSGHRDGR----------------IMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSE-----G 261 (1115)
Q Consensus 206 LaSGS~Dgt----------------IrlWdl~~~~~~~~~~~~~~~~l~--GH~~~V~sVafSpdG~-L~SgS~-----D 261 (1115)
|+.++.|+. |++|++.++.. .....+. .|...+.+++|||||+ |+.++. +
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcc------cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 999999877 99999986421 1123333 3667789999999998 654443 6
Q ss_pred CcEEEEeCCC------cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-----
Q 001245 262 GGIKIWPWEA------IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG----- 330 (1115)
Q Consensus 262 gtIrvWdl~t------~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s----- 330 (1115)
..|.+||+.+ +.... ..+..+. ..+.. .+++++..++..+
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~------------------~~l~~~~----------~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKW------------------VKLIDNF----------EGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCC------------------EEEECSS----------SSCEE-EEEEETTEEEEEECTTCT
T ss_pred cEEEEEECcccccccCCccce------------------EEeeCCC----------CcEEE-EEeccCCEEEEEECCCCC
Confidence 7899999876 31100 0011111 11111 1233344443322
Q ss_pred CCeEEEEEcCCccE--EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEE
Q 001245 331 FLSFALWDARTREL--LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRR 408 (1115)
Q Consensus 331 d~tI~lWD~~tg~l--l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~ 408 (1115)
...|.+||+.+++. .+.+..+.
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~-------------------------------------------------------- 333 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEH-------------------------------------------------------- 333 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCC--------------------------------------------------------
T ss_pred CCEEEEEeCCCCCcccceeccCCC--------------------------------------------------------
Confidence 12477777765421 11110000
Q ss_pred EecccccccCCCceEEEEEcCCCc-EEEEeCCCe--EEEEcC-CCCeeEEeecCCCcEEEEE--ecCCEEEeee----cc
Q 001245 409 VAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGL--LLQWDP-NGNRLQDFQYLPFAVQCLC--TFGSQIWVGY----MN 478 (1115)
Q Consensus 409 ~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~Dgt--IklWD~-tG~~l~tl~gH~~~V~sla--~dG~~LaSGs----~D 478 (1115)
....+..+++++++. ++++..|+. |.+||+ +|+.++.+..|...|.+++ ++|+.|+... ..
T Consensus 334 ---------~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P 404 (710)
T 2xdw_A 334 ---------EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSP 404 (710)
T ss_dssp ---------SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCC
T ss_pred ---------CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCC
Confidence 001244556666665 577888885 566788 8998899988877888887 5787776332 45
Q ss_pred cEEEEEeCC-Ccc-cccccc
Q 001245 479 GIVQVLDLE-GNL-LGGWVA 496 (1115)
Q Consensus 479 GtIrlWD~~-G~l-l~~l~g 496 (1115)
++|.+||+. |+. +..++.
T Consensus 405 ~~i~~~d~~tg~~~~~~l~~ 424 (710)
T 2xdw_A 405 GIIYHCDLTKEELEPRVFRE 424 (710)
T ss_dssp CEEEEEETTSSSCCCEEEEE
T ss_pred CEEEEEECCCCccceEEeee
Confidence 899999986 552 344443
No 205
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.95 E-value=1.6e-07 Score=101.18 Aligned_cols=226 Identities=7% Similarity=-0.041 Sum_probs=140.1
Q ss_pred EEEEEe-CCeEEE-e--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeC
Q 001245 136 RTIVCT-EEQLWA-G--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1115)
Q Consensus 136 ~~l~~~-~~~l~a-g--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~ 211 (1115)
..++.+ ++.+|+ + .++.|.+||..++..... + . .. ...+.+++++++|.++++..
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~----------------~--~-~~-~~~p~~i~~~~~g~l~v~~~- 85 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL----------------P--F-NG-LYQPQGLAVDGAGTVYVTDF- 85 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EEC----------------C--C-CS-CCSCCCEEECTTCCEEEEET-
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccceE----------------e--e-CC-cCCcceeEECCCCCEEEEcC-
Confidence 355554 567887 4 567999999765432210 0 0 11 23566799999999777666
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEee-cCCCCEEEEEEeCCCcEE-EEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-AHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~-GH~~~V~sVafSpdG~L~-SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
++.|.+||.++.. ...+. +....+.+|+++++|.|+ +.+.++.|.+|+..+......
T Consensus 86 ~~~i~~~d~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~------------ 144 (270)
T 1rwi_B 86 NNRVVTLAAGSNN---------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL------------ 144 (270)
T ss_dssp TTEEEEECTTCSC---------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC------------
T ss_pred CCEEEEEeCCCce---------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee------------
Confidence 8999999987621 22232 233678999999999965 556788999997654322100
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~ 368 (1115)
.... ......++.++++..+++.. .+.|.+||..++......
T Consensus 145 -------~~~~----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-------------------- 187 (270)
T 1rwi_B 145 -------PFTG----------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-------------------- 187 (270)
T ss_dssp -------CCCS----------CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------------------
T ss_pred -------cccc----------CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--------------------
Confidence 0000 01233466677665444433 467888886544321100
Q ss_pred cccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEe-CCCeEEEEcC
Q 001245 369 EDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQWDP 447 (1115)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS-~DgtIklWD~ 447 (1115)
..+...+..++++++|.++.+. .++.|.+||.
T Consensus 188 -----------------------------------------------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 188 -----------------------------------------------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp -----------------------------------------------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred -----------------------------------------------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 0011245678888998876544 5789999999
Q ss_pred CCCeeEEee-cCCCcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 448 NGNRLQDFQ-YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 448 tG~~l~tl~-gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+|.....+. .+...+.+|+ ++|+++++...+++|++++..
T Consensus 221 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 221 GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp TCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred CCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 765544433 3445688888 578877788889999999986
No 206
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.95 E-value=2e-06 Score=93.30 Aligned_cols=264 Identities=11% Similarity=0.070 Sum_probs=154.3
Q ss_pred eeEEEEEe-CCeEEEeC--CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe
Q 001245 134 FLRTIVCT-EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH 210 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~ag~--D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS 210 (1115)
....++.+ ++.+|.+. ++.|.+||.. +..... ..... ...+.+++++++|.+.++..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~-~~~~~~i~~~~~g~l~v~~~ 75 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITEY------------------PLPTP-DAKVMCLTISSDGEVWFTEN 75 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE------------------ECSST-TCCEEEEEECTTSCEEEEET
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe------------------cCCcc-cCceeeEEECCCCCEEEeCC
Confidence 34566655 66888853 6789999987 442210 10011 34678999999999888888
Q ss_pred CCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEE-EEeCCCcEEEEeCCCcceeeccCCCcceeEEEE
Q 001245 211 RDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALI 289 (1115)
Q Consensus 211 ~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~-SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~ 289 (1115)
.++.|..||.++ . .....+..+...+.+|+++++|.|+ +...++.|.+||. ++....
T Consensus 76 ~~~~i~~~~~~g-~-------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~------------- 133 (299)
T 2z2n_A 76 AANKIGRITKKG-I-------IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE------------- 133 (299)
T ss_dssp TTTEEEEECTTS-C-------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-------------
T ss_pred CCCeEEEECCCC-c-------EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-------------
Confidence 889999999863 1 0111222355679999999999975 5556789999998 432210
Q ss_pred eeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEec-CCceeeEEeccCCCCcc
Q 001245 290 VERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQIENRVDMSLLPDFA 367 (1115)
Q Consensus 290 ~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~-~~~~~~~v~~s~~~~~~ 367 (1115)
..+... ......++.++++...++.. .+.|..||. +|+....... .......+.+.
T Consensus 134 -----~~~~~~----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~------ 191 (299)
T 2z2n_A 134 -----YELPNK----------GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG------ 191 (299)
T ss_dssp -----EECSST----------TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC------
T ss_pred -----ecCCCC----------CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC------
Confidence 000000 12355677777765444443 468999998 7776543111 11111122222
Q ss_pred ccccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEEEeccccc-----ccCCCceEEEEEcCCCcEEEEe-CCC
Q 001245 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGGF-----GDDNRRTEALTTSIDGMIWTGG-ANG 440 (1115)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~g~l-----~~h~~~V~aVa~S~Dg~laSGS-~Dg 440 (1115)
+++...+... .+.+.+++..+.+ ..+...+.+++++++|.++.+. .++
T Consensus 192 -------------------------~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 246 (299)
T 2z2n_A 192 -------------------------NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN 246 (299)
T ss_dssp -------------------------TTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred -------------------------CCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCc
Confidence 2221111111 2234444432221 1234568899999999987766 678
Q ss_pred eEEEEcCCCCeeEE-eecCCCcEEEEE-ecCCEEEeeecccEEEEEeCC
Q 001245 441 LLLQWDPNGNRLQD-FQYLPFAVQCLC-TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 441 tIklWD~tG~~l~t-l~gH~~~V~sla-~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.|..||.+|+.... +..+...+.+++ ++|.+.++.+ .+.|..+|.+
T Consensus 247 ~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 247 KIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp EEEEEETTTEEEEEECSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC
T ss_pred eEEEECCCCceEEEeCCCCCCccceEEecCCCEEEEec-CCcEEEEEcC
Confidence 99999997753322 234456677777 4555444444 5566666754
No 207
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.94 E-value=1.3e-08 Score=113.15 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=38.1
Q ss_pred ccCcceEEEEEEEecEEEEEEeecccccc------hhHHHHHHHHHHHHHhc
Q 001245 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 674 ~gNKGaV~ir~~i~~t~l~FVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1115)
..+||++.+++.+.+..|.++|+||.+.. .....|.+++..|.+.+
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFI 179 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 45899999999999999999999998873 35667888888887654
No 208
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.94 E-value=2e-07 Score=106.31 Aligned_cols=315 Identities=10% Similarity=0.086 Sum_probs=169.6
Q ss_pred EEeCCeEEEe-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCce-EEEEEcCCCCEEEEEeCCCeEE
Q 001245 139 VCTEEQLWAG-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSV-MCMVGDEASGVVWSGHRDGRIM 216 (1115)
Q Consensus 139 ~~~~~~l~ag-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V-~~la~s~dg~~LaSGS~DgtIr 216 (1115)
+..++.+|++ .++.|..+|.++|...... . .+... .... .. ...+ ..++. ++..|+.++.|+.|.
T Consensus 50 ~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~-----~--~~~~~--~~~~-~~-~~~~~~~~~~--~~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 50 ALADNVVYAADRAGLVKALNADDGKEIWSV-----S--LAEKD--GWFS-KE-PALLSGGVTV--SGGHVYIGSEKAQVY 116 (376)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEE-----E--CCC-----CCS-CC-CCCEEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEECCEEEEEcCCCeEEEEEccCCceeeee-----c--Ccccc--cccc-cc-CcccccCceE--eCCEEEEEcCCCEEE
Confidence 3357888885 5779999999999876530 0 00000 0000 00 0112 22222 356888899999999
Q ss_pred EEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeee
Q 001245 217 CWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYID 296 (1115)
Q Consensus 217 lWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~ 296 (1115)
.+|..+|+ ...+...+.....+.++ .++.++.++.|+.|..+|.++++........... ..
T Consensus 117 a~d~~tG~--------~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~----------~~ 177 (376)
T 3q7m_A 117 ALNTSDGT--------VAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS----------LS 177 (376)
T ss_dssp EEETTTCC--------EEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------------
T ss_pred EEECCCCC--------EEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc----------ee
Confidence 99998742 23333322221112222 3567888999999999999988765332111000 00
Q ss_pred ecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEE
Q 001245 297 LRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTK 375 (1115)
Q Consensus 297 l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~ 375 (1115)
+.+. ... +.. +..++.+. ++.+..+|+.+|+.+..+......- ........+. ...+
T Consensus 178 ~~~~----------~~~----~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~--~~~p--- 235 (376)
T 3q7m_A 178 LRGE----------SAP----TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSDV--DTTP--- 235 (376)
T ss_dssp -CCC----------CCC----EEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CC--CCCC---
T ss_pred ecCC----------CCc----EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-Cccccccccc--CCCc---
Confidence 0000 011 111 23455444 5789999999999987764322100 0000000000 0000
Q ss_pred EEecCCCCccceeeeeeccccceEEec-cCcEEEEecc-cccc--cCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCC
Q 001245 376 IVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAK-GGFG--DDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGN 450 (1115)
Q Consensus 376 ~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~-g~l~--~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~ 450 (1115)
... ...+..+. .+.+..++.. |... ........++. .++.++.++.++.|..+|. +|+
T Consensus 236 ---------------~~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 236 ---------------VVV-NGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV-DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ---------------EEE-TTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE-ETTEEEEEETTCCEEEEETTTCC
T ss_pred ---------------EEE-CCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 000 01111111 1222222221 1110 01122333333 3667888999999999999 898
Q ss_pred eeEEeec-CCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE-EEecCCEEEeecCCCceEEee
Q 001245 451 RLQDFQY-LPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-MAVGAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 451 ~l~tl~g-H~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s-va~dg~~laSgS~DgtIRlWd 524 (1115)
.+-.... ....+.+....+..|+.++.+|.|.++|.+ |+.+.....+...+.+ ....+..|+.++.||.|..|+
T Consensus 299 ~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 299 TLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 8766652 222333444568899999999999999976 8877666553333433 334567888899999999886
No 209
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.90 E-value=2.3e-07 Score=102.50 Aligned_cols=211 Identities=11% Similarity=0.036 Sum_probs=132.3
Q ss_pred CeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 143 EQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 143 ~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
+++++ +.|+.|++||.++|..+.. ...++...+.+++++|+|++|+ +.++.|..||.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~ 63 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR 63 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC
Confidence 44444 4788999999999987764 1111012467899999999999 45888999999
Q ss_pred CCCCCCCCCCCcceEEeecC-CCCEEEEEEeCCCc-EEEEeC-CCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeee
Q 001245 221 NARLLDSDDGFGEVLSWQAH-RGPVLSLCISSYGD-LWSGSE-GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDL 297 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~GH-~~~V~sVafSpdG~-L~SgS~-DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l 297 (1115)
++ +.+.++..+ ...+.++.+.++|+ |++.+. ++.|..+|.+ ++....+. ... ..
T Consensus 64 ~G---------~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~----------~~~---~~ 120 (276)
T 3no2_A 64 DG---------RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTE----------FET---GI 120 (276)
T ss_dssp TS---------CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEE----------ECC---SC
T ss_pred CC---------CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEe----------ccC---CC
Confidence 53 456677665 35789999999998 567666 6667666653 33221110 000 00
Q ss_pred cccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEE
Q 001245 298 RSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKI 376 (1115)
Q Consensus 298 ~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~ 376 (1115)
.++. .....++..+++..+++.. ++.|..||.. |+.+..+...+.
T Consensus 121 ~~~~----------~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~----------------------- 166 (276)
T 3no2_A 121 ERPH----------AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT----------------------- 166 (276)
T ss_dssp SSGG----------GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-----------------------
T ss_pred Cccc----------ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-----------------------
Confidence 0010 0111234456677777664 5789999987 888877642211
Q ss_pred EecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CCCeeEE
Q 001245 377 VTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NGNRLQD 454 (1115)
Q Consensus 377 ~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG~~l~t 454 (1115)
+.++...++|. +++++.++.|..+|. +|+.+-+
T Consensus 167 ---------------------------------------------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 167 ---------------------------------------------PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp ---------------------------------------------CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred ---------------------------------------------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 11223345555 556666778999999 5999888
Q ss_pred eecCC------CcEEEEE--ecCCEEEeee
Q 001245 455 FQYLP------FAVQCLC--TFGSQIWVGY 476 (1115)
Q Consensus 455 l~gH~------~~V~sla--~dG~~LaSGs 476 (1115)
+..+. ..+.+++ ++|..+++.+
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 202 VNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ecCCCCCCccccccccceEcCCCCEEEEec
Confidence 86432 1255655 4677666653
No 210
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.89 E-value=2.1e-08 Score=113.14 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=39.9
Q ss_pred cccCcceEEEEEEEecEEEEEEeecccccc------hhHHHHHHHHHHHHHhc
Q 001245 673 AIGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 673 ~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1115)
...+||.+.+++.+.+..|.++|+||.+.. .....|.++...|.+.+
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 198 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFV 198 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHH
Confidence 357999999999999999999999998764 34778999998887765
No 211
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.88 E-value=8.8e-07 Score=107.94 Aligned_cols=269 Identities=12% Similarity=0.052 Sum_probs=160.9
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDS 227 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~ 227 (1115)
..+++|.|||.+++..... .. . ...+..++|+|||++|+.++.|++|.+||+..++
T Consensus 174 ~~~~~V~viD~~t~~v~~~------------------i~-~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t--- 229 (567)
T 1qks_A 174 RDAGQIALIDGSTYEIKTV------------------LD-T--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--- 229 (567)
T ss_dssp TTTTEEEEEETTTCCEEEE------------------EE-C--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS---
T ss_pred CCCCeEEEEECCCCeEEEE------------------Ee-C--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCC---
Confidence 4788999999998876542 11 1 2245589999999999999999999999995111
Q ss_pred CCCCcceEEeecCCCCEEEEEEe----CCCc-EE-EEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccc
Q 001245 228 DDGFGEVLSWQAHRGPVLSLCIS----SYGD-LW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHL 301 (1115)
Q Consensus 228 ~~~~~~~~~l~GH~~~V~sVafS----pdG~-L~-SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~ 301 (1115)
.+.+.++....+ ...|+|| |||+ ++ +.-.+++|.|+|..+.+....+ .+.+..
T Consensus 230 ---~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i-----------------~~~~~~ 288 (567)
T 1qks_A 230 ---PTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ-----------------STRGMT 288 (567)
T ss_dssp ---CCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE-----------------ECCEEC
T ss_pred ---CcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE-----------------eccccc
Confidence 133445544333 4799999 6998 54 5567799999998886544211 111100
Q ss_pred eecceeeeecCCeEEEEEeCCCCEEE-eec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEec
Q 001245 302 SVNGFSSILTSDIKNLLSDHSRAKVW-SAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTS 379 (1115)
Q Consensus 302 ~~~~~~~~~s~~v~~las~~~~~~v~-S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~ 379 (1115)
..+....+...+..+..++++..++ +.. .+.|.++|..+.+.+.+-.
T Consensus 289 -~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~------------------------------ 337 (567)
T 1qks_A 289 -YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE------------------------------ 337 (567)
T ss_dssp -TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE------------------------------
T ss_pred -cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee------------------------------
Confidence 0000011222445555555543332 222 2556666655433221100
Q ss_pred CCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCc-EE-EEeCCCeEEEEcC-CCCeeEEee
Q 001245 380 SKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IW-TGGANGLLLQWDP-NGNRLQDFQ 456 (1115)
Q Consensus 380 ~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-la-SGS~DgtIklWD~-tG~~l~tl~ 456 (1115)
+ ........+.+++||+ ++ +...+++|.+||. +++++.++.
T Consensus 338 -----------------------------i-------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 338 -----------------------------I-------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp -----------------------------E-------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred -----------------------------e-------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 0 0001233467888887 44 4446789999999 888777665
Q ss_pred c-----CCC-cEEEEEecCCEEEeee--cccEEEEEeCC--------CccccccccccCC-E-EEEEecCCEEEeecC--
Q 001245 457 Y-----LPF-AVQCLCTFGSQIWVGY--MNGIVQVLDLE--------GNLLGGWVAHSSP-V-IKMAVGAGYIFTLAN-- 516 (1115)
Q Consensus 457 g-----H~~-~V~sla~dG~~LaSGs--~DGtIrlWD~~--------G~ll~~l~gH~~~-V-~sva~dg~~laSgS~-- 516 (1115)
. |.+ .+.-+.+++..+++.+ .+++|.++|.+ .+.++++.+.... + ....+++++++....
T Consensus 382 vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~ 461 (567)
T 1qks_A 382 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 461 (567)
T ss_dssp CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC
T ss_pred ccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCC
Confidence 4 543 3332347766666544 46899999975 2355666544222 1 223468888876442
Q ss_pred -----CCceEEeeecCC
Q 001245 517 -----HGGIRGWNVTSP 528 (1115)
Q Consensus 517 -----DgtIRlWdl~~p 528 (1115)
.++|-++|+.+.
T Consensus 462 ~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 462 PEAEISGSVAVFDIKAM 478 (567)
T ss_dssp SSHHHHTCEEEEEGGGC
T ss_pred CCcccCceEEEEECCcc
Confidence 468999998764
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.88 E-value=5e-06 Score=90.21 Aligned_cols=263 Identities=11% Similarity=0.096 Sum_probs=155.2
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEE-EEeCCCcEEEEeC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPW 269 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~-SgS~DgtIrvWdl 269 (1115)
...+.+++++++|.+.++...++.|.+||.. +.. . ...+..+...+.+|+++++|.|+ +...++.|..||.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~------~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI------K-EFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE------E-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce------E-EEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 3467899999999988887789999999987 321 1 11233445689999999999975 4445788999998
Q ss_pred CCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 270 EAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 270 ~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
. ++.. .+ .+... ......++.++++...++.. .+.|..||.. |+.....
T Consensus 91 ~-g~~~-~~-----------------~~~~~----------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~ 140 (300)
T 2qc5_A 91 K-GGFT-EY-----------------PLPQP----------DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD 140 (300)
T ss_dssp T-SCEE-EE-----------------ECSST----------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred C-CCeE-Ee-----------------cCCCC----------CCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc
Confidence 6 3221 00 00000 12355677777665554443 4678889987 6654321
Q ss_pred -ecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEEEeccccc-----ccCCCc
Q 001245 349 -NIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGGF-----GDDNRR 421 (1115)
Q Consensus 349 -~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~g~l-----~~h~~~ 421 (1115)
.........+.+ .+++...++.. .+.+.+++..+.+ ......
T Consensus 141 ~~~~~~~~~~i~~-------------------------------d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~ 189 (300)
T 2qc5_A 141 LPNKGSYPAFITL-------------------------------GSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAA 189 (300)
T ss_dssp CSSTTCCEEEEEE-------------------------------CTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC
T ss_pred CCCCCCCceeEEE-------------------------------CCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCC
Confidence 111111112222 22222111111 2234444332221 123346
Q ss_pred eEEEEEcCCCcEEEEeC-CCeEEEEcCCCCeeEE-eecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCcccc-cccc
Q 001245 422 TEALTTSIDGMIWTGGA-NGLLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLG-GWVA 496 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~-DgtIklWD~tG~~l~t-l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~-~l~g 496 (1115)
+..+++.++|.++.+.. .+.|.+||.+|+.... +..+...+.+|+ ++|.+.++...++.|..||.+|+... .+..
T Consensus 190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~ 269 (300)
T 2qc5_A 190 PVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQT 269 (300)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCS
T ss_pred cceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCc
Confidence 78899999999876654 5689999997776543 334456688888 46775555556789999998765432 2333
Q ss_pred ccCCEEEEEe--cCCEEEeecCCCceEEee
Q 001245 497 HSSPVIKMAV--GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 497 H~~~V~sva~--dg~~laSgS~DgtIRlWd 524 (1115)
+...+.+++. +|+..++.. . .|..++
T Consensus 270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp TTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred cCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 4456777775 455545444 3 555544
No 213
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.86 E-value=6.3e-08 Score=109.84 Aligned_cols=238 Identities=11% Similarity=-0.013 Sum_probs=131.1
Q ss_pred CEEEEEEeCCCc-EEEEe-CC--CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEE
Q 001245 243 PVLSLCISSYGD-LWSGS-EG--GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLL 318 (1115)
Q Consensus 243 ~V~sVafSpdG~-L~SgS-~D--gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~la 318 (1115)
.+.+++|||||+ |+.++ .+ ..|.+||+++++... ++ .++. .......
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~------------------~~~~----------~~~~~~~ 87 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LT------------------EGKG----------DNTFGGF 87 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CC------------------CSSC----------BCTTTCE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-ee------------------cCCC----------Cccccce
Confidence 378899999998 55443 33 368888988765321 10 0010 0000123
Q ss_pred EeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceee---EEeccCCCCccccccceEEEEecCCCCccceeeeeecc
Q 001245 319 SDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIEN---RVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQR 394 (1115)
Q Consensus 319 s~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~---~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~ 394 (1115)
.++++..|+.++ +..|.+||+.+++....+..+..... .+.+.... ....++. ....++++
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-------~~~~~~~--------~~~~~spd 152 (396)
T 3c5m_A 88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT-------KLVGIEI--------LKRDWQPL 152 (396)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS-------EEEEEEE--------EGGGCCCC
T ss_pred ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC-------ccccccc--------cccccCCC
Confidence 466777775544 56799999999987766653332211 12221110 0000110 01123333
Q ss_pred ccceEEe------ccCcEEEEecc-cc---cccCCCceEEEEEcC-CCc-EEEEeCC------CeEEEEcCCCCeeEEee
Q 001245 395 SRNAIMG------AADAVRRVAAK-GG---FGDDNRRTEALTTSI-DGM-IWTGGAN------GLLLQWDPNGNRLQDFQ 456 (1115)
Q Consensus 395 ~~~~~~G------s~d~v~~~~~~-g~---l~~h~~~V~aVa~S~-Dg~-laSGS~D------gtIklWD~tG~~l~tl~ 456 (1115)
+..++.. ....+.+|+.. +. +..+...+..++++| |+. |+..+.+ ..|.+||+++..++.+.
T Consensus 153 g~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 153 TSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp CSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred CcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 3322221 11234445432 11 223445677889999 776 6655543 36888898665555554
Q ss_pred cCC--CcEEEEE--ecCCEEEeeecc-----cEEEEEeCC-Ccc--ccccccccCCEEEEEe-cCCEEEeec--------
Q 001245 457 YLP--FAVQCLC--TFGSQIWVGYMN-----GIVQVLDLE-GNL--LGGWVAHSSPVIKMAV-GAGYIFTLA-------- 515 (1115)
Q Consensus 457 gH~--~~V~sla--~dG~~LaSGs~D-----GtIrlWD~~-G~l--l~~l~gH~~~V~sva~-dg~~laSgS-------- 515 (1115)
.+. ..+..++ +||++|+.++.+ ++|++||+. |+. +..+.++. ....+ ||+++++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~---~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS---HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE---EEEECSSSSEEEEEECCC-----
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC---CCccCCCCceEEEecCCcceeec
Confidence 442 2466666 789988877654 679999987 543 22233332 33446 899888754
Q ss_pred --------CCCceEEeeecC
Q 001245 516 --------NHGGIRGWNVTS 527 (1115)
Q Consensus 516 --------~DgtIRlWdl~~ 527 (1115)
.+..|.+||+.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp -----CCCCCCEEEEEETTT
T ss_pred cccccccCCCCcEEEEeccc
Confidence 347899998764
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.85 E-value=1.5e-07 Score=118.09 Aligned_cols=230 Identities=8% Similarity=-0.023 Sum_probs=136.1
Q ss_pred ceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCc---
Q 001245 193 SVMCMVGDEASGVVWSGHRD-----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGG--- 263 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~D-----gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dgt--- 263 (1115)
.+..++|||||++||.++.+ .+|++||++++. ......+...+.+++|+|| + |+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~---------~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK---------PLADELKWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC---------EEEEEEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---------CCCccCCCceeccEEEECC-CEEEEEEecCcccc
Confidence 57789999999999988765 469999999743 2222112222357899999 7 777776655
Q ss_pred -----------EEEEeCCCccee--eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec
Q 001245 264 -----------IKIWPWEAIEKA--LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG 330 (1115)
Q Consensus 264 -----------IrvWdl~t~~~~--l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s 330 (1115)
|++|++.++... +.+ ....+. ..+..+..++++..|+..+
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~-----------------~~~~~~----------~~~~~~~~SpDG~~l~~~~ 286 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVF-----------------ATPELP----------KRGHGASVSSDGRWVVITS 286 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEE-----------------CCTTCT----------TCEEEEEECTTSCEEEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEe-----------------ccCCCC----------eEEEEEEECCCCCEEEEEE
Confidence 889998765321 000 000110 1234455666766554332
Q ss_pred -C-----CeEEEEEcCCc--cEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEec
Q 001245 331 -F-----LSFALWDARTR--ELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA 402 (1115)
Q Consensus 331 -d-----~tI~lWD~~tg--~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs 402 (1115)
+ ..|.+||+.++ ++.+.+..+.
T Consensus 287 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-------------------------------------------------- 316 (741)
T 1yr2_A 287 SEGTDPVNTVHVARVTNGKIGPVTALIPDL-------------------------------------------------- 316 (741)
T ss_dssp ECTTCSCCEEEEEEEETTEECCCEEEECSS--------------------------------------------------
T ss_pred EccCCCcceEEEEECCCCCCcccEEecCCC--------------------------------------------------
Confidence 2 36888888765 2122221100
Q ss_pred cCcEEEEecccccccCCCceEEEEEcCCCc-EEEEeC----CCeEEEEcCC-C-CeeEEee-cCCCcEEEEEe-cCCEEE
Q 001245 403 ADAVRRVAAKGGFGDDNRRTEALTTSIDGM-IWTGGA----NGLLLQWDPN-G-NRLQDFQ-YLPFAVQCLCT-FGSQIW 473 (1115)
Q Consensus 403 ~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~-laSGS~----DgtIklWD~t-G-~~l~tl~-gH~~~V~sla~-dG~~La 473 (1115)
..+.... ++||. |+..+. ++.|.+||++ + ...+.+. .+...+.++++ ++.+++
T Consensus 317 -----------------~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~ 378 (741)
T 1yr2_A 317 -----------------KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFA 378 (741)
T ss_dssp -----------------SSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEE
T ss_pred -----------------CceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEE
Confidence 0001111 13333 444443 4569999994 3 3444444 44445666774 566778
Q ss_pred eeecccEEEEEe--CCCccccccccc-cCCEEEEEe--cCCEEE----eecCCCceEEeeecC
Q 001245 474 VGYMNGIVQVLD--LEGNLLGGWVAH-SSPVIKMAV--GAGYIF----TLANHGGIRGWNVTS 527 (1115)
Q Consensus 474 SGs~DGtIrlWD--~~G~ll~~l~gH-~~~V~sva~--dg~~la----SgS~DgtIRlWdl~~ 527 (1115)
+...|+..+||. ++|+.+..+..+ .+.|..+++ +++.++ |....++|.+||+.+
T Consensus 379 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 379 SYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 888899877775 457766666653 566777764 676555 455678999999865
No 215
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.84 E-value=3.2e-08 Score=107.94 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=32.9
Q ss_pred cCcceEEEEEEE--ecEEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 675 GNKGAVGLRVRV--YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 675 gNKGaV~ir~~i--~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
.+++++.+.|.. .+..|+++|+||.+.. .+.|.++...|.+.+
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~l 158 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG--EEARRQSALLIIRKI 158 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC--HHHHHHHHHHHHHHH
Confidence 467888888885 5789999999998754 356777777776654
No 216
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.83 E-value=8.2e-07 Score=103.74 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=144.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCC--cEEEEe
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGG--GIKIWP 268 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~Dg--tIrvWd 268 (1115)
.....|+++++|.++++...++.|++||++++ .+.++.+...... ++|+++|+ |+.+..++ .|.+|+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---------~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---------KVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---------EEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---------EEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 45778999999999999888999999999863 2333332222233 99999997 77777765 788887
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKV 347 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~t 347 (1115)
..+......+ -.+..+. ......+++++++..|+.+ .++.|..||..++... .
T Consensus 201 ~~~~~~~~~~----------------g~~~~~~---------~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~ 254 (409)
T 3hrp_A 201 KASGWAPTRI----------------GQLGSTF---------SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-L 254 (409)
T ss_dssp GGGTTCEEEE----------------EECCTTS---------CSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-E
T ss_pred cCCCceeEEe----------------eeccchh---------cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-E
Confidence 7553221000 0000000 0223456677744444443 3467899998776532 2
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCc-e-EEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRR-T-EAL 425 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~-V-~aV 425 (1115)
+...+.. ++... . ..+
T Consensus 255 ~~~~~~~--------------------------------------------------------------g~~~~~P~~~i 272 (409)
T 3hrp_A 255 IKQLELS--------------------------------------------------------------GSLGTNPGPYL 272 (409)
T ss_dssp EEECCCC--------------------------------------------------------------SCCCCSSCCEE
T ss_pred Eeccccc--------------------------------------------------------------CCCCCCccccE
Confidence 2100000 00000 0 157
Q ss_pred EEcC-CCcE-EEEeCCCeEEEEcCCCCeeEEeecCC---------------CcEEEEE--ecCCEEEeee-cccEEEEEe
Q 001245 426 TTSI-DGMI-WTGGANGLLLQWDPNGNRLQDFQYLP---------------FAVQCLC--TFGSQIWVGY-MNGIVQVLD 485 (1115)
Q Consensus 426 a~S~-Dg~l-aSGS~DgtIklWD~tG~~l~tl~gH~---------------~~V~sla--~dG~~LaSGs-~DGtIrlWD 485 (1115)
+++| ++.| ++-+.++.|+.||.+|+ +.++.++. .....|+ ++|.+.++-+ .+++|++||
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 7888 4666 45566789999999877 44554543 3466777 5788666666 789999999
Q ss_pred CC-Cccccccccc---------------cCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 486 LE-GNLLGGWVAH---------------SSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 486 ~~-G~ll~~l~gH---------------~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
+. |+ +.++.++ -.....|++ +|.+.++-..++.||.+++
T Consensus 352 ~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 352 ILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 54 54 4555555 245778886 4667777788888888765
No 217
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.83 E-value=7.3e-08 Score=106.91 Aligned_cols=287 Identities=12% Similarity=0.085 Sum_probs=171.7
Q ss_pred eCCeEEEeC-CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 141 TEEQLWAGG-ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 141 ~~~~l~ag~-D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
.++.+|++. ++.|..|| .++..... .... ...+.++.++++|. |+.|+.+ |..+|
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~-~~~~~~~~~~~~g~-l~v~t~~--l~~~d 84 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWF-------------------FKSG-EIIECRPSIGKDGT-IYFGSDK--VYAIN 84 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEES-------------------SCGG-GEEEECCEETTTTE-ECCSSCE--EEEEC
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEE-------------------EecC-CCcccceEEecCCc-EEEecCc--EEEEC
Confidence 477899864 88999999 87775542 0011 23456677777664 6666666 88888
Q ss_pred CCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc
Q 001245 220 MNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS 299 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~ 299 (1115)
..+ +....+..+.....+.++. +|.|+.|+.++.|..+|.+ ++.......
T Consensus 85 ~~g---------~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~------------------- 134 (330)
T 3hxj_A 85 PDG---------TEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKT------------------- 134 (330)
T ss_dssp CCG---------GGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEEC-------------------
T ss_pred CCC---------cEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcC-------------------
Confidence 643 1121222222223334444 6779999999999999987 443311100
Q ss_pred cceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEe
Q 001245 300 HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVT 378 (1115)
Q Consensus 300 h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~ 378 (1115)
.. ..+..++.++++. +|.++ ++.|..+|.. |+.+..+.......... ..+.
T Consensus 135 ~~----------~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~--------~~d~-------- 186 (330)
T 3hxj_A 135 KK----------AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA--------SIGK-------- 186 (330)
T ss_dssp SS----------CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC--------EECT--------
T ss_pred CC----------ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee--------EEcC--------
Confidence 00 1111223444444 55554 5889999998 88776664322211100 0000
Q ss_pred cCCCCccceeeeeeccccceEEeccCcEEEEeccccc----ccCCCceEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeEE
Q 001245 379 SSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNGNRLQD 454 (1115)
Q Consensus 379 ~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l----~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~t 454 (1115)
+ ..+..+. +++..++..+.. ......+.+++..++|.|+.|+.++.|..+|.+|+.+..
T Consensus 187 ---------------~-g~l~v~t-~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~ 249 (330)
T 3hxj_A 187 ---------------D-GTIYFGS-DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWR 249 (330)
T ss_dssp ---------------T-CCEEEES-SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEE
T ss_pred ---------------C-CEEEEEe-CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEE
Confidence 1 1122222 344444422211 112244667888899999999999999999988888877
Q ss_pred eecCCCcEEEEEec-CCEEEeeecccEEEEEeCCCccccccccccCCEEEEEe-cCCEEEeecCCCceEEeeec
Q 001245 455 FQYLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 455 l~gH~~~V~sla~d-G~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~-dg~~laSgS~DgtIRlWdl~ 526 (1115)
+..+...+.++..+ +..|+.|+.+|.|..+|.+|+.+..+.-....+.++.. .+..|+-++.+|.+++-...
T Consensus 250 ~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred eeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 76554444445544 66889999998999999888776666555556667666 44567778999999987754
No 218
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.77 E-value=9.9e-08 Score=103.35 Aligned_cols=134 Identities=13% Similarity=0.031 Sum_probs=75.3
Q ss_pred eEEEEEEeCCCCCCch---------hhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHh
Q 001245 554 ILAGTWNVGQGRASQD---------ALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIG 624 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~---------~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~ 624 (1115)
+.|+||||.+..+... .+.++|.. .+||| |+|||++.. +.+.+.
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~--~~~DI--v~LQEv~~~-----------------------~~~~l~ 53 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINF--HDWSL--CCIQEVRPN-----------------------QVRDLK 53 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHH--HCCSE--EEEEEECHH-----------------------HHHHHH
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHH--cCCCE--EEEeCCCHH-----------------------HHHHHH
Confidence 4689999987654321 23344432 24665 789998521 112233
Q ss_pred cccCCCCceEEEeeec-cccEEEEEEEeccccCccCceee--e----eeeeeccccccCcceEEEEEEEe--cEEEEEEe
Q 001245 625 KILDDGSTFERVGSRQ-LAGLLIAVWVRKNLKDYVGDVDV--A----AVPCGFGRAIGNKGAVGLRVRVY--DRIMCFVN 695 (1115)
Q Consensus 625 ~~L~~~~~y~~v~s~~-L~Gi~l~vfvr~~l~~~i~~v~~--~----~v~tG~~g~~gNKGaV~ir~~i~--~t~l~FVn 695 (1115)
+.| ++.|....... -.|-.+.+|.|++..+.+..-.. . ..+.+. +...+++++.++|... +..|.++|
T Consensus 54 ~~l--~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~ 130 (257)
T 3l1w_A 54 AYT--TFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVIN 130 (257)
T ss_dssp HHS--SSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEE
T ss_pred hcC--CCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEE
Confidence 334 33333222111 34556777887654332211110 0 001111 2344778888998884 67999999
Q ss_pred ecccccchhHHHHHHHHHHHHHhc
Q 001245 696 CHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 696 ~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
+||.+... +.|.+++..|.+.+
T Consensus 131 ~Hl~~~~~--~~r~~q~~~l~~~i 152 (257)
T 3l1w_A 131 VHLDHISA--HARLAGMTVILEEL 152 (257)
T ss_dssp EECCSSCH--HHHHHHHHHHHHHT
T ss_pred eCCCCCCH--HHHHHHHHHHHHHH
Confidence 99987643 56888888887765
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.75 E-value=9e-07 Score=98.27 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeC-CCcEEEEeC
Q 001245 192 SSVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSE-GGGIKIWPW 269 (1115)
Q Consensus 192 ~~V~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~-DgtIrvWdl 269 (1115)
......+++++|+ +++++..++.|..|+.++ ....+..+.+.+.+++++++|+|+.+.. ++.|.+|+.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----------~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----------TVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----------CEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----------CEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 4556788999988 899999999999999853 2445666778899999999999876664 578999998
Q ss_pred C
Q 001245 270 E 270 (1115)
Q Consensus 270 ~ 270 (1115)
+
T Consensus 115 ~ 115 (305)
T 3dr2_A 115 D 115 (305)
T ss_dssp T
T ss_pred C
Confidence 6
No 220
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.73 E-value=5.4e-07 Score=113.02 Aligned_cols=111 Identities=7% Similarity=-0.020 Sum_probs=72.2
Q ss_pred eeEEEEEe-CCeEEE--eC----C-CCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 134 FLRTIVCT-EEQLWA--GG----E-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~a--g~----D-~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
.+..++.+ +++++| +. | .+|++||+++|..... ..+ ...+..++|+|| +.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~-~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELK-WVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEE-EEESCCCEESTT-SE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCC-CceeccEEEECC-CE
Confidence 34455555 555554 21 1 3799999998875431 111 111246889999 99
Q ss_pred EEEEeCCCe--------------EEEEECCCCCCCCCCCCcceEEee--cCCCCEEEEEEeCCCc-EEEEeCC-----Cc
Q 001245 206 VWSGHRDGR--------------IMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGD-LWSGSEG-----GG 263 (1115)
Q Consensus 206 LaSGS~Dgt--------------IrlWdl~~~~~~~~~~~~~~~~l~--GH~~~V~sVafSpdG~-L~SgS~D-----gt 263 (1115)
|+.++.|+. |++|++.++.. .....+. +|...+.++.|||||+ |+..+.+ ..
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT 295 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGG------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCch------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence 999988765 89999976321 1123343 3445689999999997 6655433 48
Q ss_pred EEEEeCCCc
Q 001245 264 IKIWPWEAI 272 (1115)
Q Consensus 264 IrvWdl~t~ 272 (1115)
|.+||++++
T Consensus 296 l~~~d~~~~ 304 (741)
T 1yr2_A 296 VHVARVTNG 304 (741)
T ss_dssp EEEEEEETT
T ss_pred EEEEECCCC
Confidence 999998765
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.71 E-value=3e-07 Score=104.25 Aligned_cols=264 Identities=9% Similarity=-0.038 Sum_probs=144.9
Q ss_pred CceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCCCCCCCCcc-eEEeecCCCCEEEEEEeCCCcEEEEeC------CC
Q 001245 192 SSVMCMVGDEASGVVWSGH--RDGRIMCWKMNARLLDSDDGFGE-VLSWQAHRGPVLSLCISSYGDLWSGSE------GG 262 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS--~DgtIrlWdl~~~~~~~~~~~~~-~~~l~GH~~~V~sVafSpdG~L~SgS~------Dg 262 (1115)
..+..++++++|+++++.. .++.++||.++.+.. .++.. .....+|...+.+|+|+++|+|+-... ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~---~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL---IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE---EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe---ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 4678899999999999975 345477887753211 00000 001235677899999999999764432 57
Q ss_pred cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEE-ee----cCCeEEEE
Q 001245 263 GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SA----GFLSFALW 337 (1115)
Q Consensus 263 tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~-S~----sd~tI~lW 337 (1115)
.|.+||+.+++....+ .+.... . .+......+++++++..++ +. .+..|.+|
T Consensus 94 ~i~~~d~~tg~~~~~~-----------------~~~~~~--~----~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVI-----------------YLPPPI--T----LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEEEEETTTTEEEEEE-----------------ECCTTT--S----CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred eEEEEECCCCeEEEEE-----------------ECChhh--c----ccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 8999999886533111 010000 0 0112234566775444443 32 34689999
Q ss_pred EcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc-CcEEEEecccccc
Q 001245 338 DARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKGGFG 416 (1115)
Q Consensus 338 D~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~-d~v~~~~~~g~l~ 416 (1115)
|+.+|+..+++..+... .+.. ..+..++..+..... +.+..|.
T Consensus 151 d~~~g~~~r~~~~~~~~------~~~~------------------------~~~~~~g~~~~~~~~~g~~~~~~------ 194 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGI------APED------------------------IDLVIDGVPVQIGQPDGTVIRPH------ 194 (343)
T ss_dssp ETTTCCEEEECTTCTTT------SCCS------------------------CCCEETTEECBEECTTSCEECCC------
T ss_pred ECCCCCEEEEecCCCcc------cccc------------------------cceeECCEEEEeccCCCceecee------
Confidence 99999987766432111 0000 011111111111111 1121121
Q ss_pred cCCCceEEEEEcCCCc-EEEEeCCCeEEEEcCC------CC-----eeE--EeecCCCcEEEEE--ecCCEEEeeecccE
Q 001245 417 DDNRRTEALTTSIDGM-IWTGGANGLLLQWDPN------GN-----RLQ--DFQYLPFAVQCLC--TFGSQIWVGYMNGI 480 (1115)
Q Consensus 417 ~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~t------G~-----~l~--tl~gH~~~V~sla--~dG~~LaSGs~DGt 480 (1115)
..++.|++++||. |+.+..++. ++|.++ +. ... ...++......++ ++|.+.++...++.
T Consensus 195 ---~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~ 270 (343)
T 2qe8_A 195 ---LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSA 270 (343)
T ss_dssp ---CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTE
T ss_pred ---cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCe
Confidence 2457799999996 777776663 455431 11 011 1123333333444 67888888888999
Q ss_pred EEEEeC-CCcccccccc-ccCCEEEEEe--cCCEEEeecCCCceE
Q 001245 481 VQVLDL-EGNLLGGWVA-HSSPVIKMAV--GAGYIFTLANHGGIR 521 (1115)
Q Consensus 481 IrlWD~-~G~ll~~l~g-H~~~V~sva~--dg~~laSgS~DgtIR 521 (1115)
|.+||. +|+....... +...+.++++ +|++.++.+..+.+-
T Consensus 271 V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 271 IGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp EEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred EEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 999999 6764322221 2456888887 456666655444443
No 222
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.71 E-value=1.9e-06 Score=95.35 Aligned_cols=210 Identities=15% Similarity=0.132 Sum_probs=128.6
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcce
Q 001245 196 CMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (1115)
Q Consensus 196 ~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~ 274 (1115)
+.++++ ++.++|+...+++|..||.+++ ....+ .+...+.+++++++|+|+.+. ++.|.+||+++++.
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~---------~~~~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTK---------QVQRV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSA 85 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEEE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCC---------cEEEE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcE
Confidence 567888 4778899999999999999863 22233 345789999999999977665 56899999987543
Q ss_pred eeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-C---------eEEEEEcCCccE
Q 001245 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-L---------SFALWDARTREL 344 (1115)
Q Consensus 275 ~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~---------tI~lWD~~tg~l 344 (1115)
.... ...... +......+++++++..+++... . ...||.+..
T Consensus 86 ~~~~-----------------~~~~~~--------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~--- 137 (297)
T 3g4e_A 86 VVLA-----------------TVDNDK--------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP--- 137 (297)
T ss_dssp EEEE-----------------ECCTTC--------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT---
T ss_pred EEEE-----------------ecCCCC--------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC---
Confidence 2100 000000 0012345666776653332110 0 011111100
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEE
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~a 424 (1115)
++ .+..+ .......+.
T Consensus 138 ------~g----------------------------------------------------~~~~~------~~~~~~png 153 (297)
T 3g4e_A 138 ------DH----------------------------------------------------HVKKY------FDQVDISNG 153 (297)
T ss_dssp ------TS----------------------------------------------------CEEEE------EEEESBEEE
T ss_pred ------CC----------------------------------------------------CEEEE------eeccccccc
Confidence 00 00000 011123467
Q ss_pred EEEcCCCc-E-EEEeCCCeEEEEcC---CCCee-----EEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCC-Cccc
Q 001245 425 LTTSIDGM-I-WTGGANGLLLQWDP---NGNRL-----QDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLE-GNLL 491 (1115)
Q Consensus 425 Va~S~Dg~-l-aSGS~DgtIklWD~---tG~~l-----~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~-G~ll 491 (1115)
+++++|+. + ++.+.++.|.+||+ +|... ..+..+......++ ++|.+.++...++.|.+||.+ |+++
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 89999986 5 56666889999985 45432 22333345567777 468666666678899999997 9999
Q ss_pred cccccccCCEEEEEecC
Q 001245 492 GGWVAHSSPVIKMAVGA 508 (1115)
Q Consensus 492 ~~l~gH~~~V~sva~dg 508 (1115)
..+..+...+++++++|
T Consensus 234 ~~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 234 QTVKLPVDKTTSCCFGG 250 (297)
T ss_dssp EEEECSSSBEEEEEEES
T ss_pred EEEECCCCCceEEEEeC
Confidence 88888877899998753
No 223
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=1.1e-07 Score=106.04 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=74.6
Q ss_pred cceEEEEEEeCCCCCCc-----------hhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHH
Q 001245 552 LKILAGTWNVGQGRASQ-----------DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWL 620 (1115)
Q Consensus 552 irI~v~TWNv~~~~~~~-----------~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~ 620 (1115)
-.+.|.||||....+.. +.+..+|.. .+|| ||||||+... +.
T Consensus 5 ~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~--~~~D--Iv~LQEv~~~-----------------------~~ 57 (298)
T 3mpr_A 5 TSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQY--HDFD--IFGTQECFLH-----------------------QL 57 (298)
T ss_dssp EEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHH--TTCS--EEEEESBCHH-----------------------HH
T ss_pred CcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHH--cCCC--EEEEeCCCHH-----------------------HH
Confidence 46889999997554321 123333432 3567 5889999521 12
Q ss_pred HHHhcccCCCCceEEEeeecc----ccEEEEEEEeccccCccCceee------eeeeeeccccccCcceEEEEEE--Eec
Q 001245 621 DMIGKILDDGSTFERVGSRQL----AGLLIAVWVRKNLKDYVGDVDV------AAVPCGFGRAIGNKGAVGLRVR--VYD 688 (1115)
Q Consensus 621 ~~l~~~L~~~~~y~~v~s~~L----~Gi~l~vfvr~~l~~~i~~v~~------~~v~tG~~g~~gNKGaV~ir~~--i~~ 688 (1115)
+.|.+.|+ .|..+..... .|-.+.+|.|++-.+.+..-.. ...+.|.. ..-+++++.+.|. ..+
T Consensus 58 ~~l~~~l~---~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~-~~~~R~~~~~~~~~~~~g 133 (298)
T 3mpr_A 58 KDMKEALP---GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWD-AVLPRICSWGHFKCKDTG 133 (298)
T ss_dssp HHHHHHST---TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTT-CSSCCEEEEEEEEETTTC
T ss_pred HHHHHhCC---CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccc-cccCceeEEEEEEEcCCC
Confidence 33444452 2443433322 3444666666654333211110 00011221 1236778888888 467
Q ss_pred EEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 689 t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
..|+++|+||.+.. .+.|.++...|.+.+
T Consensus 134 ~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i 162 (298)
T 3mpr_A 134 FEFLFFNLHMDHIG--KKARVESAFLVQEKM 162 (298)
T ss_dssp CEEEEEEEECCSSC--HHHHHHHHHHHHHHH
T ss_pred CEEEEEEecCCCCC--HHHHHHHHHHHHHHH
Confidence 89999999998543 356778888887664
No 224
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.70 E-value=3.2e-06 Score=102.94 Aligned_cols=233 Identities=13% Similarity=0.037 Sum_probs=145.4
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCC--Cccee
Q 001245 199 GDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE--AIEKA 275 (1115)
Q Consensus 199 ~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~--t~~~~ 275 (1115)
.|+.+.++++...|++|.+||.+++ +.+.++.. ...+..++|||||+ |+.++.|++|.+||+. +++..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~--------~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTY--------EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTC--------CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCC--------eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 4566778889999999999999873 23444432 23567999999998 7888999999999995 44322
Q ss_pred eccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEe----CCCCEEEeec--CCeEEEEEcCCccEEEEEe
Q 001245 276 LSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSD----HSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 276 l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~----~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~ 349 (1115)
.++ .. + ..-..++++ +++..++.+. .++|.|+|..|.+.++++.
T Consensus 234 ~~i-----------------~~-G------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~ 283 (567)
T 1qks_A 234 AEI-----------------KI-G------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 283 (567)
T ss_dssp EEE-----------------EC-C------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEE-----------------ec-C------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe
Confidence 100 00 0 123466777 5777777654 5889999999999888764
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
..+... . . ..+.+ ..++.++..++
T Consensus 284 ~~~~~~-------~---------------------~---~~~~p-------------------------~~rva~i~~s~ 307 (567)
T 1qks_A 284 TRGMTY-------D---------------------E---QEYHP-------------------------EPRVAAILASH 307 (567)
T ss_dssp CCEECT-------T---------------------T---CCEES-------------------------CCCEEEEEECS
T ss_pred cccccc-------c---------------------c---ccccC-------------------------CCceEEEEEcC
Confidence 211000 0 0 00000 01344556666
Q ss_pred CCc--EEEEeCCCeEEEEcC-CCCee--EEeecCCCcEEEEE--ecCCEEEeee-cccEEEEEeCC-Cccccccc-----
Q 001245 430 DGM--IWTGGANGLLLQWDP-NGNRL--QDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV----- 495 (1115)
Q Consensus 430 Dg~--laSGS~DgtIklWD~-tG~~l--~tl~gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~-G~ll~~l~----- 495 (1115)
++. +++-..+|+|.++|. +.+.+ .++. .......+. +||++++++. .+++|.++|++ ++++..+.
T Consensus 308 ~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 308 YRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 654 345566789999998 43322 2222 222344444 7899988776 57899999987 66655443
Q ss_pred cccC-CEEEEEecCCEEE-eec-CCCceEEeeecC
Q 001245 496 AHSS-PVIKMAVGAGYIF-TLA-NHGGIRGWNVTS 527 (1115)
Q Consensus 496 gH~~-~V~sva~dg~~la-SgS-~DgtIRlWdl~~ 527 (1115)
.|.+ .+.-+.+++..++ +.. .+++|-++|..+
T Consensus 387 Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 387 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 3643 2331335555554 432 578999999765
No 225
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.69 E-value=3.2e-07 Score=101.91 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=37.3
Q ss_pred ccCcceEEEEEEEecEEEEEEeecccccc------hhHHHHHHHHHHHHHhc
Q 001245 674 IGNKGAVGLRVRVYDRIMCFVNCHFAAHL------EAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 674 ~gNKGaV~ir~~i~~t~l~FVn~HLaA~~------~~~~~Rn~d~~~I~~~l 719 (1115)
..++|++.+++.+.+..|.++|+||.+.. .....|.+++..|.+.+
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999998873 24567888888887654
No 226
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.67 E-value=8.1e-06 Score=89.60 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCcEEEE-eCCCeEEEEcCC-CCeeEEeecCCCcEEEEE--ecCCEEEeee-cccEEEEEeCC
Q 001245 421 RTEALTTSIDGMIWTG-GANGLLLQWDPN-GNRLQDFQYLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLE 487 (1115)
Q Consensus 421 ~V~aVa~S~Dg~laSG-S~DgtIklWD~t-G~~l~tl~gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~ 487 (1115)
.+..++++++|.++.+ ..++.|.+||.+ |+.+..+..+...+.+++ ++|++|++++ .++.|..|+++
T Consensus 227 ~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 227 GADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 3456788899997655 468899999995 998888887778899998 6788676665 56889999975
No 227
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.67 E-value=5.5e-08 Score=104.82 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=25.5
Q ss_pred eEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccCc
Q 001245 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMG 595 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~~ 595 (1115)
+-|.||||++.....+.+.+++.. .+||| |+|||+...
T Consensus 1 lrv~t~Nv~~~~~~~~~i~~~i~~--~~~DI--v~LQE~~~~ 38 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQVQNLLAD--NPPDI--LVLQELKLD 38 (256)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHS--SCCSE--EEEECCCSC
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHh--cCCCE--EEEEeeccc
Confidence 358999998643333456667753 45775 789999653
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.67 E-value=1e-08 Score=118.00 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=103.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCC
Q 001245 202 ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKP 280 (1115)
Q Consensus 202 dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~ 280 (1115)
++++|++|+.||.|+.||..+| +...+++. +++.+..+..+|. +++++.|++|+.||.++++.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG--------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG--------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC--------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCC--------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec
Confidence 5789999999999999999874 34455555 5666666777776 67788999999999988765422211
Q ss_pred CcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEEecCCceeeEEe
Q 001245 281 EERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDGQIENRVD 359 (1115)
Q Consensus 281 ~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~ 359 (1115)
+.. ..+.. ..+. .. +..|+.+ .++.+..||+.||+.+..+..++..
T Consensus 78 -------------------~~~-~~~~~---sp~~----~~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~----- 124 (369)
T 2hz6_A 78 -------------------TIP-ELVQA---SPCR----SS-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD----- 124 (369)
T ss_dssp -------------------CHH-HHHTT---CSCC----------CCCCEEEEEEEEECCC-------------------
T ss_pred -------------------cCc-ccccc---CceE----ec-CCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc-----
Confidence 000 00000 1110 11 2234433 3578999999999887654211100
Q ss_pred ccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEc-CCCcEEEEeC
Q 001245 360 MSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTS-IDGMIWTGGA 438 (1115)
Q Consensus 360 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S-~Dg~laSGS~ 438 (1115)
.++ .++.+++|+.
T Consensus 125 ------------------------------------------------------------------~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 125 ------------------------------------------------------------------SLSPSTSLLYLGRT 138 (369)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred ------------------------------------------------------------------cccccCCEEEEEec
Confidence 001 2345788899
Q ss_pred CCeEEEEcC-CCCeeEEeecCCCcEEEEEecC-----CEEEeeecccEEEEEeCC-CccccccccccCCEEE
Q 001245 439 NGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFG-----SQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK 503 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG-----~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s 503 (1115)
|++|..||. +|+++-++..+. ..+.+.++ ..+++++.||.|..||.+ |+++-.+. ...++.+
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEE
T ss_pred CCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEE
Confidence 999999999 898876655332 11222222 678889999999999986 88765554 3345554
No 229
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.67 E-value=3.7e-07 Score=105.85 Aligned_cols=175 Identities=8% Similarity=0.044 Sum_probs=112.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--CC-CCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEE
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARL--LD-SDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIW 267 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~--~~-~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvW 267 (1115)
.++..|++++..+++|+|+.|+ +++|++.... .. ....++.. ....+.+ |+.|+| |+. |+.+ .|+.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 3577899999999999999995 5569964210 00 00002221 2345777 999999 666 6666 88999999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKV 347 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~t 347 (1115)
|+.+......+ ..|. ..+..+...+.+ .++...++++.+||+.++...+.
T Consensus 112 dv~sl~~~~~~-------------------~~~~----------~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~~ 161 (388)
T 1xip_A 112 DLEELSEFRTV-------------------TSFE----------KPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQL 161 (388)
T ss_dssp ESSSTTCEEEE-------------------EECS----------SCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred EchhhhccCcc-------------------ceee----------cceeeEEecCCC-EEEEECCCCEEEEEccCCccccc
Confidence 99774321000 0011 112222222222 23334578999999987664310
Q ss_pred EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEE
Q 001245 348 FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTT 427 (1115)
Q Consensus 348 l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~ 427 (1115)
...|.|+++
T Consensus 162 -----------------------------------------------------------------------~~~Vs~v~W 170 (388)
T 1xip_A 162 -----------------------------------------------------------------------AQNVTSFDV 170 (388)
T ss_dssp -----------------------------------------------------------------------EESEEEEEE
T ss_pred -----------------------------------------------------------------------cCCceEEEE
Confidence 014678999
Q ss_pred cCCCcEEEEeCCCeEEEEcCCCCe---eEEe------e---cCCCcEEEEE--ecCCEEEe
Q 001245 428 SIDGMIWTGGANGLLLQWDPNGNR---LQDF------Q---YLPFAVQCLC--TFGSQIWV 474 (1115)
Q Consensus 428 S~Dg~laSGS~DgtIklWD~tG~~---l~tl------~---gH~~~V~sla--~dG~~LaS 474 (1115)
||+| ++.|..||+|++|+.++.. ..++ . +|...|.+|+ .++.++++
T Consensus 171 SpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 171 TNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999 7889999999999995544 5666 3 4788899998 46666664
No 230
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.65 E-value=4.3e-06 Score=94.07 Aligned_cols=215 Identities=13% Similarity=0.017 Sum_probs=127.7
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcce
Q 001245 196 CMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEK 274 (1115)
Q Consensus 196 ~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~ 274 (1115)
+.+++++ +.+++++..++.|..||.+++ ....+. +...|.+++++++|+++-++.++ |.+||+++++.
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~---------~~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~ 121 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASG---------RKTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGVL 121 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTT---------EEEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCC---------cEEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcE
Confidence 4678886 668888889999999999863 223332 45689999999999976555554 99999877643
Q ss_pred eeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-----CeEEEEEcCCccEEEEEe
Q 001245 275 ALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-----LSFALWDARTRELLKVFN 349 (1115)
Q Consensus 275 ~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-----~tI~lWD~~tg~ll~tl~ 349 (1115)
.... ...... +...+..++.++++..+++... ....||.+.+|+....
T Consensus 122 ~~~~-----------------~~~~~~--------~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~-- 174 (326)
T 2ghs_A 122 TLHA-----------------ELESDL--------PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKL-- 174 (326)
T ss_dssp EEEE-----------------CSSTTC--------TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEE--
T ss_pred EEEe-----------------eCCCCC--------CCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEe--
Confidence 2100 000000 0012445666776653332211 1122222112211100
Q ss_pred cCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcC
Q 001245 350 IDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSI 429 (1115)
Q Consensus 350 ~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~ 429 (1115)
. .+....+.+++++
T Consensus 175 ------------------------------------------------------------~------~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 175 ------------------------------------------------------------F------ADISIPNSICFSP 188 (326)
T ss_dssp ------------------------------------------------------------E------EEESSEEEEEECT
T ss_pred ------------------------------------------------------------e------CCCcccCCeEEcC
Confidence 0 0011245678899
Q ss_pred CCc-EE-EEeCCCeEEEEcC---CC-Ce-----eEEeecCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCcccccccc
Q 001245 430 DGM-IW-TGGANGLLLQWDP---NG-NR-----LQDFQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVA 496 (1115)
Q Consensus 430 Dg~-la-SGS~DgtIklWD~---tG-~~-----l~tl~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~g 496 (1115)
||. ++ +.+.++.|.+||+ +| .. +..+..+......++ .+|.+.++...++.|.+||.+|+.+..+..
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~ 268 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEV 268 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEEC
Confidence 986 54 4556789999997 35 32 222333344566777 457655555567899999998888888877
Q ss_pred ccCCEEEEEec---CCEEEee
Q 001245 497 HSSPVIKMAVG---AGYIFTL 514 (1115)
Q Consensus 497 H~~~V~sva~d---g~~laSg 514 (1115)
+...+.+++++ ++.|+.+
T Consensus 269 ~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 269 PGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp SCSBEEEEEEESTTSCEEEEE
T ss_pred CCCCcEEEEEecCCCCEEEEE
Confidence 77778998864 3455433
No 231
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.65 E-value=4.3e-05 Score=82.69 Aligned_cols=260 Identities=12% Similarity=0.111 Sum_probs=150.5
Q ss_pred eEEEEEe-CCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeC
Q 001245 135 LRTIVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1115)
Q Consensus 135 l~~l~~~-~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~ 211 (1115)
...++.+ ++.+|.+ .++.|.+||.. +..... ..... ...+.+++++++|.+.++...
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~ 81 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF------------------EVPTP-DAKVMCLIVSSLGDIWFTENG 81 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE------------------ECSST-TCCEEEEEECTTSCEEEEETT
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE------------------ECCCC-CCcceeEEECCCCCEEEEecC
Confidence 3455554 6778875 46899999987 432210 00011 346788999999998888777
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEE-EEeCCCcEEEEeCCCcceeeccCCCcceeEEEEe
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLW-SGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~-SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~ 290 (1115)
++.|..+|..+ .. ....+.++...+.+|+++++|.|+ +...++.|..||.+ ++.. .+
T Consensus 82 ~~~v~~~d~~g-~~-------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~------------ 139 (300)
T 2qc5_A 82 ANKIGKLSKKG-GF-------TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY------------ 139 (300)
T ss_dssp TTEEEEECTTS-CE-------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE------------
T ss_pred CCeEEEECCCC-Ce-------EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec------------
Confidence 89999999873 11 112223345679999999999975 55557899999986 3221 00
Q ss_pred eeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEec--CCceeeEEeccCCCCcc
Q 001245 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI--DGQIENRVDMSLLPDFA 367 (1115)
Q Consensus 291 ~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~--~~~~~~~v~~s~~~~~~ 367 (1115)
.+... ......++.++++...++.. .+.|..+|. +++... +.. .......+.+
T Consensus 140 -----~~~~~----------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~------- 195 (300)
T 2qc5_A 140 -----DLPNK----------GSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITS------- 195 (300)
T ss_dssp -----ECSST----------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEE-------
T ss_pred -----cCCCC----------CCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEE-------
Confidence 00000 12345677777776444433 467999998 666553 221 1111111222
Q ss_pred ccccceEEEEecCCCCccceeeeeeccccceEEec-cCcEEEEeccccc-----ccCCCceEEEEEcCCCcEEEEe-CCC
Q 001245 368 MEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGGF-----GDDNRRTEALTTSIDGMIWTGG-ANG 440 (1115)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~g~l-----~~h~~~V~aVa~S~Dg~laSGS-~Dg 440 (1115)
.+++...++.. .+.+.+++..+.+ ......+.+++++++|.|+.+. .++
T Consensus 196 ------------------------d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 196 ------------------------GNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp ------------------------CTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred ------------------------CCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 11221111111 1234444432221 1234567889999999987665 468
Q ss_pred eEEEEcCCCCeeEE-eecCCCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 441 LLLQWDPNGNRLQD-FQYLPFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 441 tIklWD~tG~~l~t-l~gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
.|..||.+|+.... +..+...+.+|+ ++|.+.++.. . .|..+|.
T Consensus 252 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 252 QIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred eEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 99999997765432 333445677777 4566444444 5 6776664
No 232
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.62 E-value=6.5e-06 Score=95.24 Aligned_cols=270 Identities=9% Similarity=0.024 Sum_probs=156.4
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe----------C
Q 001245 197 MVGDEASGVVWSGHR-----DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------E 260 (1115)
Q Consensus 197 la~s~dg~~LaSGS~-----DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS----------~ 260 (1115)
....|+++.|+.... +++|-+.|..++ +.+.++..-..+ . |++||||+ |+.++ .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--------~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--------RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--------EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC--------eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 445788888888865 789999999873 334455433445 4 99999998 65443 4
Q ss_pred CCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecc--cceecceeeeecCCeEEEEEeCCCCEEEeec---CCeEE
Q 001245 261 GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRS--HLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFA 335 (1115)
Q Consensus 261 DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~--h~~~~~~~~~~s~~v~~las~~~~~~v~S~s---d~tI~ 335 (1115)
+++|.+||..+.+..-++ .+.. +.. +. ..-..+++++++..++.+. +++|.
T Consensus 108 ~~~VsviD~~t~~v~~~I-----------------~v~~g~r~~---~g----~~P~~~a~spDGk~lyVan~~~~~~Vs 163 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADI-----------------ELPDAPRFL---VG----TYPWMTSLTPDGKTLLFYQFSPAPAVG 163 (386)
T ss_dssp EEEEEEECTTTCCEEEEE-----------------EETTCCCCC---BS----CCGGGEEECTTSSEEEEEECSSSCEEE
T ss_pred CCEEEEEECCCCeEEEEE-----------------ECCCccccc---cC----CCCceEEEcCCCCEEEEEEcCCCCeEE
Confidence 689999999986543111 0100 000 00 1122467788888877653 47899
Q ss_pred EEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc--CcEEEEeccc
Q 001245 336 LWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA--DAVRRVAAKG 413 (1115)
Q Consensus 336 lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~--d~v~~~~~~g 413 (1115)
++|+.+++.++++...+.. ..++... ...+...++++.+..... +.+..... .
T Consensus 164 VID~~t~~vv~tI~v~g~~---~~~P~g~---------------------~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~ 218 (386)
T 3sjl_D 164 VVDLEGKAFKRMLDVPDCY---HIFPTAP---------------------DTFFMHCRDGSLAKVAFGTEGTPEITHT-E 218 (386)
T ss_dssp EEETTTTEEEEEEECCSEE---EEEEEET---------------------TEEEEEETTSCEEEEECCSSSCCEEEEC-C
T ss_pred EEECCCCcEEEEEECCCcc---eeecCCC---------------------ceeEEECCCCCEEEEECCCCCeEEEeec-c
Confidence 9999999999888543321 0000000 001122233333322221 11111000 0
Q ss_pred ccccCCCce-EEEEE-cCCCcEEEEeCCCeEEEEcCCCC---eeEEee------------cCCCcEEEEEecCCEEEeee
Q 001245 414 GFGDDNRRT-EALTT-SIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGY 476 (1115)
Q Consensus 414 ~l~~h~~~V-~aVa~-S~Dg~laSGS~DgtIklWD~tG~---~l~tl~------------gH~~~V~sla~dG~~LaSGs 476 (1115)
.+.-....+ ...++ .+||+++-.+.+|+|.+.|..+. .+..+. .......++.+++++|+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~ 298 (386)
T 3sjl_D 219 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 298 (386)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence 010011111 11233 57888766777999999999543 333332 11223345557899999875
Q ss_pred c----------ccEEEEEeCC-Cccccccc-cccCCEEEEE--ecCC-EEEe-ecCCCceEEeeecC
Q 001245 477 M----------NGIVQVLDLE-GNLLGGWV-AHSSPVIKMA--VGAG-YIFT-LANHGGIRGWNVTS 527 (1115)
Q Consensus 477 ~----------DGtIrlWD~~-G~ll~~l~-gH~~~V~sva--~dg~-~laS-gS~DgtIRlWdl~~ 527 (1115)
. ..+|.+.|++ ++.++.+. ++ .+++|+ +|++ +|++ ...+++|-++|..+
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 3 3689999987 77777664 43 466666 5886 6665 45699999999875
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.58 E-value=1.7e-06 Score=107.78 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=57.6
Q ss_pred CCeEEEEcC-CCCe--eEEeecCCCcEEEEEecCCEEEeeeccc---EEEEEeCCCccccccc-cccCCEEEEEe--cCC
Q 001245 439 NGLLLQWDP-NGNR--LQDFQYLPFAVQCLCTFGSQIWVGYMNG---IVQVLDLEGNLLGGWV-AHSSPVIKMAV--GAG 509 (1115)
Q Consensus 439 DgtIklWD~-tG~~--l~tl~gH~~~V~sla~dG~~LaSGs~DG---tIrlWD~~G~ll~~l~-gH~~~V~sva~--dg~ 509 (1115)
.+.|..||+ ++.+ .+++..|...+.+++++|++|+..+.++ .|++||++|.....+. .+.+.+..+.. +++
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCS
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCC
Confidence 367889999 5544 4677777766557779999888776543 7999999876555443 23344555543 555
Q ss_pred EEEeecCC----CceEEeeecC
Q 001245 510 YIFTLANH----GGIRGWNVTS 527 (1115)
Q Consensus 510 ~laSgS~D----gtIRlWdl~~ 527 (1115)
.++-...+ ++|..||+.+
T Consensus 384 ~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 384 ALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp CEEEEEECSSSCCEEEEECTTT
T ss_pred EEEEEecCCCCCCEEEEEECCC
Confidence 54433222 6788887654
No 234
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.53 E-value=2.7e-05 Score=86.06 Aligned_cols=212 Identities=11% Similarity=0.140 Sum_probs=127.5
Q ss_pred CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001245 142 EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWK 219 (1115)
Q Consensus 142 ~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWd 219 (1115)
++.||. ..++.|..||.+++.... + .. ...+.+++++++|+++++ . ++.|.+||
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~~~~i~~~~dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQR------------------V---TM-DAPVSSVALRQSGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEE------------------E---EC-SSCEEEEEEBTTSSEEEE-E-TTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEE------------------E---eC-CCceEEEEECCCCCEEEE-E-CCeEEEEE
Confidence 345554 257799999988765321 1 11 346889999999996665 4 56899999
Q ss_pred CCCCCCCCCCCCcceEEeecC-----CCCEEEEEEeCCCcEEEEeC----------CCcEEEEeCCCcceeeccCCCcce
Q 001245 220 MNARLLDSDDGFGEVLSWQAH-----RGPVLSLCISSYGDLWSGSE----------GGGIKIWPWEAIEKALSLKPEERH 284 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~GH-----~~~V~sVafSpdG~L~SgS~----------DgtIrvWdl~t~~~~l~~~~~~~~ 284 (1115)
.+++. ...+..+ ...++.++++|+|+|+-++. ....+||.++......
T Consensus 80 ~~~g~---------~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-------- 142 (297)
T 3g4e_A 80 WKEQS---------AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-------- 142 (297)
T ss_dssp TTTTE---------EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE--------
T ss_pred CCCCc---------EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE--------
Confidence 98632 2222211 23588999999999764432 2345666654321110
Q ss_pred eEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-c-CCeEEEEEc--CCccEEEEEecCCceeeEEec
Q 001245 285 TAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-FLSFALWDA--RTRELLKVFNIDGQIENRVDM 360 (1115)
Q Consensus 285 ~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-s-d~tI~lWD~--~tg~ll~tl~~~~~~~~~v~~ 360 (1115)
.+ .. .. .....+++++++..++-+ + .+.|.+||+ .+|.+... +.
T Consensus 143 --~~--------~~-~~----------~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~-----~~------ 190 (297)
T 3g4e_A 143 --KY--------FD-QV----------DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR-----RS------ 190 (297)
T ss_dssp --EE--------EE-EE----------SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-----EE------
T ss_pred --EE--------ee-cc----------ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-----EE------
Confidence 00 00 00 112356677777655433 2 467888876 45543210 00
Q ss_pred cCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEe-CC
Q 001245 361 SLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-AN 439 (1115)
Q Consensus 361 s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS-~D 439 (1115)
+.. +......+..+++.++|.|+.+. .+
T Consensus 191 ----------------~~~-----------------------------------~~~~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 191 ----------------VYK-----------------------------------LEKEEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp ----------------EEE-----------------------------------CCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred ----------------EEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEcCC
Confidence 000 00011234567888999987554 46
Q ss_pred CeEEEEcC-CCCeeEEeecCCCcEEEEEe---cCCEEEeeec
Q 001245 440 GLLLQWDP-NGNRLQDFQYLPFAVQCLCT---FGSQIWVGYM 477 (1115)
Q Consensus 440 gtIklWD~-tG~~l~tl~gH~~~V~sla~---dG~~LaSGs~ 477 (1115)
+.|..||. +|+++.++..+...++++++ +++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 78999999 69999999888778999884 5677776664
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.51 E-value=9.7e-06 Score=92.29 Aligned_cols=267 Identities=14% Similarity=0.068 Sum_probs=148.3
Q ss_pred CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecC---------CCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcc
Q 001245 203 SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAH---------RGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIE 273 (1115)
Q Consensus 203 g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH---------~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~ 273 (1115)
+..|+.++.++.|..+|.++++ ...+..-. ...+.+.....++.++.++.|+.|..+|.++++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK--------EIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--------EEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEEccCCc--------eeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 5688889999999999998642 23232221 233444333445678899999999999999886
Q ss_pred eeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-cCCeEEEEEcCCccEEEEEecCC
Q 001245 274 KALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-GFLSFALWDARTRELLKVFNIDG 352 (1115)
Q Consensus 274 ~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-sd~tI~lWD~~tg~ll~tl~~~~ 352 (1115)
........ +. +. ...+ .. + ..|+.+ .++.+..+|+++|+.+..+....
T Consensus 125 ~~W~~~~~-----------------~~-----~~---~~p~----~~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 125 VAWQTKVA-----------------GE-----AL---SRPV----VS-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp EEEEEECS-----------------SC-----CC---SCCE----EE-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred EEEEEeCC-----------------Cc-----eE---cCCE----EE-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 55321110 00 00 0111 11 2 344443 46789999999999988775433
Q ss_pred ceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEeccccc-ccC--CCc---eEEEE
Q 001245 353 QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGF-GDD--NRR---TEALT 426 (1115)
Q Consensus 353 ~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l-~~h--~~~---V~aVa 426 (1115)
.... ..........++ . ++-... ++...+.-..++-.+|...... .+. ... +....
T Consensus 174 ~~~~---~~~~~~~~~~~~-~--v~~g~~------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 174 PSLS---LRGESAPTTAFG-A--AVVGGD------------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp --------CCCCCCEEETT-E--EEECCT------------TTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred Ccee---ecCCCCcEEECC-E--EEEEcC------------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 2210 000000000000 0 111100 0111111111222233221000 000 000 10101
Q ss_pred EcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccccccc-ccCCEEE
Q 001245 427 TSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA-HSSPVIK 503 (1115)
Q Consensus 427 ~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g-H~~~V~s 503 (1115)
.-.++.++.++.++.+..+|. +|+.+-.... ....++..++..|+.++.+|.|..+|.+ |+.+-.... ....+.+
T Consensus 236 ~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 313 (376)
T 3q7m_A 236 VVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS 313 (376)
T ss_dssp EEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC
T ss_pred EEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC
Confidence 113577888999999999999 8988765542 3455666788999999999999999986 776544431 1223334
Q ss_pred EEecCCEEEeecCCCceEEeeecCC
Q 001245 504 MAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 504 va~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
....+..|+.++.+|.+..+|..+.
T Consensus 314 ~~~~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 314 PVLYNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTC
T ss_pred CEEECCEEEEEeCCCeEEEEECCCC
Confidence 4456778999999999999997663
No 236
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.50 E-value=0.00012 Score=92.33 Aligned_cols=314 Identities=13% Similarity=0.167 Sum_probs=180.8
Q ss_pred eEEEEE-eCCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCc-eEEEEEcCCCCEEEEEeCC
Q 001245 135 LRTIVC-TEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSS-VMCMVGDEASGVVWSGHRD 212 (1115)
Q Consensus 135 l~~l~~-~~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~-V~~la~s~dg~~LaSGS~D 212 (1115)
+..+.. .++.+|++.++.|..||.+++..... ..... ... |.++..+++|. ||-|..+
T Consensus 133 i~~i~~d~~g~lwi~t~~gl~~~~~~~~~~~~~------------------~~~~~-~~~~i~~i~~d~~g~-lwigt~~ 192 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTPEGLIMFDIKESKFIDD------------------SFSTA-MHKTIASTLYRQGDQ-IYIGTST 192 (795)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTTEEECS------------------SSCHH-HHTCCEEEEEEETTE-EEEEESS
T ss_pred EEEEEECCCCCEEEEECCceEEEECCCCEEEec------------------cCCCC-CCcceEEEEECCCCC-EEEEECC
Confidence 444544 48899998778899999876543221 00011 123 88898888775 5557776
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEe--ecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEe
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSW--QAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l--~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~ 290 (1115)
+-|..|+..++. ...+ ..+...|.+|...++|.||-|+.++-+.+||..+.+... +..
T Consensus 193 ~Gl~~~~~~~~~---------~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-~~~---------- 252 (795)
T 4a2l_A 193 DGLYTYSITQKT---------FEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKN-YLH---------- 252 (795)
T ss_dssp SCEEEEETTTCC---------EEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEE-ECC----------
T ss_pred CCEEEEeCCCCe---------EEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEE-eec----------
Confidence 568889987532 1111 123567999999999998888766568899987643220 000
Q ss_pred eeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccc
Q 001245 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMED 370 (1115)
Q Consensus 291 ~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~ 370 (1115)
... .....+...+.+++.+.++ .+|.+.+..+.+||..+++........... .....
T Consensus 253 --------~~~---~~~~l~~~~i~~i~~d~~g-~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~-----------~~l~~ 309 (795)
T 4a2l_A 253 --------SPS---NPKSISSNYIRSLAMDSQN-RLWIGTFNDLNIYHEGTDSFASYSSNPVEN-----------GSLSQ 309 (795)
T ss_dssp --------CTT---CTTSCSCSBEEEEEECTTS-CEEEEESSCEEEEETTTTEEEEECCCTTST-----------TSCSS
T ss_pred --------CCC---CccccCCCeEEEEEEcCCC-CEEEEeCChhheEcCCCCeEEEEecCCCCC-----------CCCCC
Confidence 000 0000122457788777654 577666668999999887754332111000 00000
Q ss_pred cceEEEEecCCCCccceeeeeeccccceEEecc-CcEEEEecc-cccc----------cCCCceEEEEEcCCCcEEEEeC
Q 001245 371 EFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAK-GGFG----------DDNRRTEALTTSIDGMIWTGGA 438 (1115)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~-d~v~~~~~~-g~l~----------~h~~~V~aVa~S~Dg~laSGS~ 438 (1115)
. ...++....+ ..+-+|.. +++.++... +.+. -....|.+++...+|.||.|+.
T Consensus 310 ~-------------~i~~i~~D~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~ 375 (795)
T 4a2l_A 310 R-------------SVRSIFMDSQ-GGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN 375 (795)
T ss_dssp S-------------CEEEEEECTT-SCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES
T ss_pred C-------------cEEEEEEeCC-cCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 0 0001111111 12223332 455555432 1110 0234688999999999999999
Q ss_pred CCeEEEEcC-CCCeeEEeec--------CCCcEEEEEec--CCEEEeeecccEEEEEeCCCccccccc-----cccCCEE
Q 001245 439 NGLLLQWDP-NGNRLQDFQY--------LPFAVQCLCTF--GSQIWVGYMNGIVQVLDLEGNLLGGWV-----AHSSPVI 502 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~g--------H~~~V~sla~d--G~~LaSGs~DGtIrlWD~~G~ll~~l~-----gH~~~V~ 502 (1115)
++-|..||. +++..+-... ....|.+++.| |..|+.|+.++-|.++|..+.....+. .+...|.
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~ 455 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY 455 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence 988999999 4544332211 23579999854 555999998777999998633233332 2345799
Q ss_pred EEEecC-CEEEeecCCCceEEeeec
Q 001245 503 KMAVGA-GYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 503 sva~dg-~~laSgS~DgtIRlWdl~ 526 (1115)
++..|. ..|+-|+. +.+.+|+..
T Consensus 456 ~i~~d~~g~lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 456 AILPDGEGNLWLGTL-SALVRFNPE 479 (795)
T ss_dssp EEEECSSSCEEEEES-SCEEEEETT
T ss_pred EEEECCCCCEEEEec-CceeEEeCC
Confidence 988652 33444444 457778743
No 237
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.50 E-value=4.7e-05 Score=87.74 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=50.7
Q ss_pred EEEEEcCCCc-EEEEeC----------CCeEEEEcC-CCCeeEEeecCCCcEEEEE--ecCC-EEEeee-cccEEEEEeC
Q 001245 423 EALTTSIDGM-IWTGGA----------NGLLLQWDP-NGNRLQDFQYLPFAVQCLC--TFGS-QIWVGY-MNGIVQVLDL 486 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS~----------DgtIklWD~-tG~~l~tl~gH~~~V~sla--~dG~-~LaSGs-~DGtIrlWD~ 486 (1115)
..+++++|+. ++.+.. +++|.+.|. +++.+.++.... ...+++ +||+ +|+++. .+++|.++|+
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 3477888876 555432 357999999 788888886432 355555 7898 788877 5899999998
Q ss_pred C-Cccccc
Q 001245 487 E-GNLLGG 493 (1115)
Q Consensus 487 ~-G~ll~~ 493 (1115)
+ ++.+.+
T Consensus 349 ~t~~vv~~ 356 (373)
T 2mad_H 349 GAGDQDQS 356 (373)
T ss_pred CCCCEEee
Confidence 6 676655
No 238
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.46 E-value=3.6e-05 Score=88.98 Aligned_cols=96 Identities=7% Similarity=-0.097 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 001245 150 ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWK 219 (1115)
Q Consensus 150 D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS----------~DgtIrlWd 219 (1115)
+++|.|.|.+++..... .. . |..+ . ++++|||+.|+.++ .+++|.+||
T Consensus 58 ~~~V~ViD~~t~~v~~~------------------I~-v-G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGM------------------ID-G-GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp SEEEEEEETTTTEEEEE------------------EE-E-CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEECCCCeEEEE------------------EE-C-CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 57999999998876653 12 1 2344 4 99999999888775 478899999
Q ss_pred CCCCCCCCCCCCcceEEee-cC------CCCEEEEEEeCCCc-EEEEe--CCCcEEEEeCCCccee
Q 001245 220 MNARLLDSDDGFGEVLSWQ-AH------RGPVLSLCISSYGD-LWSGS--EGGGIKIWPWEAIEKA 275 (1115)
Q Consensus 220 l~~~~~~~~~~~~~~~~l~-GH------~~~V~sVafSpdG~-L~SgS--~DgtIrvWdl~t~~~~ 275 (1115)
..+. +.+.++. +. ...-..++|+|||+ |+.+. .+++|-++|+++++..
T Consensus 116 ~~t~--------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 116 PVTL--------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp TTTC--------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCCC--------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 9873 2233332 11 11345799999998 66554 3789999999987654
No 239
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.45 E-value=7.7e-05 Score=85.90 Aligned_cols=272 Identities=8% Similarity=-0.058 Sum_probs=145.7
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe----------CC
Q 001245 198 VGDEASGVVWSGHR--DG---RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EG 261 (1115)
Q Consensus 198 a~s~dg~~LaSGS~--Dg---tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS----------~D 261 (1115)
..+++++.++.... .. +|.++|.+++ +.+.++..-..+ .++|||||+ |+.+. .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--------~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG--------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCC--------eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 44577887777653 22 8999999863 334455433445 999999998 65443 37
Q ss_pred CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeec-ccceecceeeeecCCeEEEEEeCCCCEEEeec---CCeEEEE
Q 001245 262 GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLR-SHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALW 337 (1115)
Q Consensus 262 gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~-~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s---d~tI~lW 337 (1115)
++|.+||..+++..-.+. +. ......+ ..-..+++++++..|+.+. +.+|.++
T Consensus 97 ~~v~viD~~t~~~~~~i~-----------------~~~~~~~~~g------~~p~~~~~spDG~~l~v~n~~~~~~v~vi 153 (373)
T 2mad_H 97 DYVEVFDPVTFLPIADIE-----------------LPDAPRFDVG------PYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CeEEEEECCCCcEEEEEE-----------------CCCccccccC------CCccceEECCCCCEEEEEecCCCCeEEEE
Confidence 899999998755431110 00 0000000 1123567788888887653 3679999
Q ss_pred EcCCccEEEE-EecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEE-EEeccccc
Q 001245 338 DARTRELLKV-FNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVR-RVAAKGGF 415 (1115)
Q Consensus 338 D~~tg~ll~t-l~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~-~~~~~g~l 415 (1115)
| .+++.+.+ +...+.+ .+.+.... ..+.+.+++..+.......+. .......+
T Consensus 154 D-~t~~~~~~~i~~~~~~----~~~~~~~~--------------------~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 154 V-QGGSSDDQLLSSPTCY----HIHPGAPS--------------------TFYLLCAQGGLAKTDHAGGAAGAGLVGAML 208 (373)
T ss_pred E-CCCCEEeEEcCCCceE----EEEeCCCc--------------------eEEEEcCCCCEEEEECCCcEEEEEeccccc
Confidence 9 99998877 5432221 11110000 001111222211111111111 00000001
Q ss_pred ccCCCceEEEEEcCC-CcEEEEeCCCeEEEEcCC-C--CeeEEeecC----------CCcE--EEEEecCCEEEeeec--
Q 001245 416 GDDNRRTEALTTSID-GMIWTGGANGLLLQWDPN-G--NRLQDFQYL----------PFAV--QCLCTFGSQIWVGYM-- 477 (1115)
Q Consensus 416 ~~h~~~V~aVa~S~D-g~laSGS~DgtIklWD~t-G--~~l~tl~gH----------~~~V--~sla~dG~~LaSGs~-- 477 (1115)
.+........++.++ +.++..+..+.|.+.|+. + +.+.++.-. .... ..+.+||++|+++..
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 111100112233444 344444467788888883 3 223333211 1112 234478999988754
Q ss_pred --------ccEEEEEeCC-CccccccccccCCEEEEE--ecCC-EEEeec-CCCceEEeeecCC
Q 001245 478 --------NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTSP 528 (1115)
Q Consensus 478 --------DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~-~laSgS-~DgtIRlWdl~~p 528 (1115)
+++|.+.|++ ++.++++..- ....+++ .||+ .++++. .+++|.+||+.+.
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 3689999987 6777777432 2356665 5888 788877 5899999998763
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.44 E-value=9.7e-06 Score=89.64 Aligned_cols=254 Identities=11% Similarity=0.083 Sum_probs=149.5
Q ss_pred EEEEEe-CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCe
Q 001245 136 RTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGR 214 (1115)
Q Consensus 136 ~~l~~~-~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dgt 214 (1115)
..+... ++.+|++.++ |..+|. ++...... + .. .......++. ++.|+.|+.++.
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~---------------~----~~-~~~~~~~~~~--~~~l~v~t~~~~ 118 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRF---------------D----TK-KAIVSDFTIF--EDILYVTSMDGH 118 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGS---------------C----C------CCEEEE--TTEEEEECTTSE
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEE---------------E----CC-CCcccCceEE--CCEEEEEecCCE
Confidence 444444 7899998777 999986 56544320 0 00 0011112222 567888999999
Q ss_pred EEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeee
Q 001245 215 IMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSY 294 (1115)
Q Consensus 215 IrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~ 294 (1115)
|..+|..+ +.......+...+.++++.++|.|+.|+.++.|..+|.+ ++......
T Consensus 119 l~~~d~~g---------~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~--------------- 173 (330)
T 3hxj_A 119 LYAINTDG---------TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK--------------- 173 (330)
T ss_dssp EEEECTTS---------CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE---------------
T ss_pred EEEEcCCC---------CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe---------------
Confidence 99999873 233444455666778888888999999999999999987 54331110
Q ss_pred eeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceE
Q 001245 295 IDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKT 374 (1115)
Q Consensus 295 ~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~ 374 (1115)
+ .. ..+..++.+.++ .+|.++ +.+..+| .+|+.+..+......+..+..
T Consensus 174 --~--~~----------~~~~~~~~d~~g-~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~-------------- 222 (330)
T 3hxj_A 174 --T--ND----------AITSAASIGKDG-TIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAI-------------- 222 (330)
T ss_dssp --C--SS----------CCCSCCEECTTC-CEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEE--------------
T ss_pred --c--CC----------CceeeeEEcCCC-EEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEE--------------
Confidence 0 00 112223344444 466555 8899999 788776655432211111110
Q ss_pred EEEecCCCCccceeeeeeccccceEEec-cCcEEEEeccccc----ccCCCceEEEEEcCCCcEEEEeCCCeEEEEcCCC
Q 001245 375 KIVTSSKKDKAQSSFGFFQRSRNAIMGA-ADAVRRVAAKGGF----GDDNRRTEALTTSIDGMIWTGGANGLLLQWDPNG 449 (1115)
Q Consensus 375 ~~~~~~~~~~~~~~v~f~~~~~~~~~Gs-~d~v~~~~~~g~l----~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~tG 449 (1115)
..++ .+..+. .+++..++..+.. ......+.++++.+++.|+.|+.+|.|..+|.+|
T Consensus 223 -----------------~~~g-~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g 284 (330)
T 3hxj_A 223 -----------------SEDG-TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDG 284 (330)
T ss_dssp -----------------CTTS-CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTS
T ss_pred -----------------CCCC-eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCC
Confidence 0111 111121 1233333221111 1111122345566788999999999999999989
Q ss_pred CeeEEeecCCCcEEEEEe-cCCEEEeeecccEEEEEeCC
Q 001245 450 NRLQDFQYLPFAVQCLCT-FGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 450 ~~l~tl~gH~~~V~sla~-dG~~LaSGs~DGtIrlWD~~ 487 (1115)
+.+..+......+.++.. .+..|+.|+.+|.+++...+
T Consensus 285 ~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 285 TEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-
T ss_pred cEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecc
Confidence 888777665566777775 45678889999999987754
No 241
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.43 E-value=9.4e-07 Score=104.83 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=25.7
Q ss_pred ceEEEEEEeCCCCCCc----hhhhccccCCCCCceeEEEEEecccC
Q 001245 553 KILAGTWNVGQGRASQ----DALISWLGSAASDVGIVVVGLQEVEM 594 (1115)
Q Consensus 553 rI~v~TWNv~~~~~~~----~~L~~wl~~~~~~~Di~viGlQEi~~ 594 (1115)
.+-|.||||++..... +.|.+||.. .+|| ||+|||+..
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~--~~pD--IVcLQEtk~ 190 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA--EKPD--VLCLQETKL 190 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH--HCCS--EEEEECCCC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH--cCCC--EEEEEeccc
Confidence 4789999999643211 346777763 3567 478999865
No 242
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.43 E-value=2.5e-06 Score=90.48 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=61.4
Q ss_pred ceEEEEEEeCCCCCCc--hhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhcccCCC
Q 001245 553 KILAGTWNVGQGRASQ--DALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDG 630 (1115)
Q Consensus 553 rI~v~TWNv~~~~~~~--~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L~~~ 630 (1115)
.+-|.||||++..... +.+.+++.. .+||| |+|||+......+ . .+ .+ .+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~--~~~DI--v~LQE~~~~~~~~-----------------~----~l--~~-~~ 58 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS--QDPSV--CCIQETHLTCRDT-----------------H----RL--KI-KG 58 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH--HCCSE--EEEECCCCCTTSG-----------------G----GC--CC-TT
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH--cCCCE--EEEecccCCCCCc-----------------h----hH--hh-CC
Confidence 5789999998765432 456677753 35665 7899985432110 0 00 11 23
Q ss_pred CceEEEee--eccccEEEEEEEeccccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccch
Q 001245 631 STFERVGS--RQLAGLLIAVWVRKNLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLE 703 (1115)
Q Consensus 631 ~~y~~v~s--~~L~Gi~l~vfvr~~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~ 703 (1115)
+.|..... ..-.| +++|.|+.+...+..+ ... ...-.+.+++.+.+..+.++|+|+.....
T Consensus 59 y~~~~~~~~~~~~~G--vail~r~~~~~~~~~~-----~~~-----~~~r~i~~~~~~~~~~~~v~~~y~p~~~~ 121 (238)
T 1vyb_A 59 WRKIYQANGKQKKAG--VAILVSDKTDFKPTKI-----KRD-----KEGHYIMVKGSIQQEELTILNIYAPNTGA 121 (238)
T ss_dssp CCEEEEECCSSSSCC--EEEEECTTCCCEEEEE-----EEC-----TTSSEEEEEEEETTEEEEEEEEECCSSSH
T ss_pred CCeEEEccCCCCCce--EEEEEeCCCCccccce-----eEc-----CCCcEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 33332221 12234 5677777643222211 110 11225677888888999999999987654
No 243
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.43 E-value=4.3e-05 Score=89.11 Aligned_cols=242 Identities=11% Similarity=0.061 Sum_probs=141.4
Q ss_pred EEEEe-CCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCC
Q 001245 137 TIVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1115)
Q Consensus 137 ~l~~~-~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dg 213 (1115)
.|+.+ ++.||++ .++.|++||++++..... .. . ..... ++++++++.|+.+..++
T Consensus 135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~------------------~~-~--~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV------------------HP-G--FKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp EEEECSTTEEEEEETTTTEEEEEETTTTEEEEE------------------EE-T--CCBCB-CEECTTSSEEEEEBSST
T ss_pred EEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe------------------ec-c--CCCCc-eeEecCCCcEEEEecCC
Confidence 34444 6677774 457999999987764431 11 1 11222 89999999999998877
Q ss_pred --eEEEEECCCCCCCCCCCCcceEEe---ec-CCCCEEEEEEeC-CCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeE
Q 001245 214 --RIMCWKMNARLLDSDDGFGEVLSW---QA-HRGPVLSLCISS-YGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTA 286 (1115)
Q Consensus 214 --tIrlWdl~~~~~~~~~~~~~~~~l---~G-H~~~V~sVafSp-dG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~ 286 (1115)
.|.+|+..++. ....+ .. +...+.+++++| +|.|+.+..+++|+.||.+++...+.
T Consensus 193 ~~~I~~~d~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~--------- 255 (409)
T 3hrp_A 193 THTVYVYMKASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI--------- 255 (409)
T ss_dssp TCEEEEEEGGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE---------
T ss_pred CceEEEEEcCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE---------
Confidence 78888876421 11222 12 456788999999 67787777789999999987542210
Q ss_pred EEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEee-c-CCeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 287 ALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSA-G-FLSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 287 a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~-s-d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
+ . ....++. .. .+...+++++.+..|+.+ . ...|+.||... + +.++.+....
T Consensus 256 ~----~--~~~~g~~-----~~---~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~---------- 309 (409)
T 3hrp_A 256 K----Q--LELSGSL-----GT---NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQ---------- 309 (409)
T ss_dssp E----E--CCCCSCC-----CC---SSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTC----------
T ss_pred e----c--ccccCCC-----CC---CccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCC----------
Confidence 0 0 0000010 00 111157777754444433 2 46788888643 3 2222111100
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEE-EEe-CCCeE
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIW-TGG-ANGLL 442 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~la-SGS-~DgtI 442 (1115)
. |..++. . ..........++++++|.|+ +-+ .++.|
T Consensus 310 -----------------~------------------g~~dg~---~----~~~~~~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 310 -----------------K------------------TVQDGL---R----EEALFAQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp -----------------C------------------SCBCEE---G----GGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred -----------------C------------------CcCCCc---c----cccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 0 000000 0 00112346789999999875 555 68899
Q ss_pred EEEcC-CCCeeEEeecC---------------CCcEEEEE--ecCCEEEeeecccEEEEEeC
Q 001245 443 LQWDP-NGNRLQDFQYL---------------PFAVQCLC--TFGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 443 klWD~-tG~~l~tl~gH---------------~~~V~sla--~dG~~LaSGs~DGtIrlWD~ 486 (1115)
+.||+ +|. +.++.++ -.....|+ ++|.++++-..++.|+.+++
T Consensus 348 ~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 348 RKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 99996 665 5566665 23567777 56767777777888888765
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.43 E-value=0.0003 Score=88.81 Aligned_cols=315 Identities=16% Similarity=0.240 Sum_probs=180.9
Q ss_pred eeEEEEEe-CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC
Q 001245 134 FLRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D 212 (1115)
.++.+..+ ++.+|+|.++.|.+||..++..... ...... + .+.. ...|.++..|.+|. ||-|..+
T Consensus 264 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~--------~~~~~~--~--~~l~-~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 264 YIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASY--------SSNPVE--N--GSLS-QRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp BEEEEEECTTSCEEEEESSCEEEEETTTTEEEEE--------CCCTTS--T--TSCS-SSCEEEEEECTTSC-EEEEESS
T ss_pred eEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEE--------ecCCCC--C--CCCC-CCcEEEEEEeCCcC-EEEEECC
Confidence 45666655 7899998777999999876643221 000000 0 1122 46799999999875 7889998
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEeec-------CCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCccee
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQA-------HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHT 285 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~G-------H~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~ 285 (1115)
+-|..|+..++. ...+.. ....|.+|+..++|.||-|+.++-|..|+..++.... +..
T Consensus 330 ~Gl~~~~~~~~~---------~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~-~~~----- 394 (795)
T 4a2l_A 330 GGLNYYHPIRNR---------FKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTS-YTL----- 394 (795)
T ss_dssp SCEEEECGGGGS---------SEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEE-ECC-----
T ss_pred CCeEEeCCCccc---------ceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEE-Eec-----
Confidence 889999876421 111211 2456999999999999999999889999987643210 000
Q ss_pred EEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEEecCCceeeEEeccCCC
Q 001245 286 AALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNIDGQIENRVDMSLLP 364 (1115)
Q Consensus 286 ~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~ 364 (1115)
...... ...+...|.+++.+.++..||.+.. +.+.+||..+++..+........ +.
T Consensus 395 -------------~~~~~~--~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l------~~-- 451 (795)
T 4a2l_A 395 -------------QEDESA--RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL------VN-- 451 (795)
T ss_dssp -------------C--------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC------SC--
T ss_pred -------------CCCCcc--cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc------CC--
Confidence 000000 0012256788888877665777764 78999999988754322100000 00
Q ss_pred CccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-cccc----------cCCCceEEEEEcCCCcE
Q 001245 365 DFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFG----------DDNRRTEALTTSIDGMI 433 (1115)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g~l~----------~h~~~V~aVa~S~Dg~l 433 (1115)
. .+ .++....++ .+-.|..+++.+++.. +.+. -....|.++...++|.|
T Consensus 452 -----~--~v------------~~i~~d~~g-~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l 511 (795)
T 4a2l_A 452 -----E--NV------------YAILPDGEG-NLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL 511 (795)
T ss_dssp -----S--CE------------EEEEECSSS-CEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred -----C--ee------------EEEEECCCC-CEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence 0 00 000100111 2223333455555432 1111 01256888999999999
Q ss_pred EEEeCCCeEEEEcC-CCCeeEEee-------cCCCcEEEEEec-CCEEEeeecccEEEEEeCCCccccccc---cc-cCC
Q 001245 434 WTGGANGLLLQWDP-NGNRLQDFQ-------YLPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWV---AH-SSP 500 (1115)
Q Consensus 434 aSGS~DgtIklWD~-tG~~l~tl~-------gH~~~V~sla~d-G~~LaSGs~DGtIrlWD~~G~ll~~l~---gH-~~~ 500 (1115)
|.|+. +-|..||. +++. .+. .....|.+|+.| ...|+.|+..| |..||........+. |- ...
T Consensus 512 Wigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~G-l~~~d~~~~~~~~~~~~~gl~~~~ 587 (795)
T 4a2l_A 512 WIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTREG-FYCFNEKDKQIKRYNTTNGLPNNV 587 (795)
T ss_dssp EEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSC-EEEEETTTTEEEEECGGGTCSCSC
T ss_pred EEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCC-ceeECCCCCcEEEeCCCCCCchhh
Confidence 99888 55888998 4544 332 133579999854 33466666665 788897643333222 21 346
Q ss_pred EEEEEecC-CEEEeecCCCceEEeee
Q 001245 501 VIKMAVGA-GYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 501 V~sva~dg-~~laSgS~DgtIRlWdl 525 (1115)
|.++..|. ..|+-++. +.|..|+.
T Consensus 588 i~~i~~d~~g~lWi~t~-~Gl~~~~~ 612 (795)
T 4a2l_A 588 VYGILEDSFGRLWLSTN-RGISCFNP 612 (795)
T ss_dssp EEEEEECTTSCEEEEET-TEEEEEET
T ss_pred eEEEEECCCCCEEEEcC-CceEEEcC
Confidence 88887652 23444443 45666664
No 245
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.36 E-value=1.5e-05 Score=99.18 Aligned_cols=111 Identities=8% Similarity=0.113 Sum_probs=72.4
Q ss_pred eeEEEEEe-CCeEEE------eCC-CCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 134 FLRTIVCT-EEQLWA------GGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~a------g~D-~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
.+..++.+ +++++| |+| .+|++||+++|..... ...+ .....++|+ ||+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--------------------~~~~-~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--------------------PLKD-VKFSGISWL-GNEG 187 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--------------------EEEE-EESCCCEEE-TTTE
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--------------------ccCC-ceeccEEEe-CCCE
Confidence 34444555 556555 233 4899999999875431 1110 012357899 9999
Q ss_pred EEEEeCCCe-------------EEEEECCCCCCCCCCCCcceEEe--ec-CCCCEEEEEEeCCCc-E-EEEeC---CCcE
Q 001245 206 VWSGHRDGR-------------IMCWKMNARLLDSDDGFGEVLSW--QA-HRGPVLSLCISSYGD-L-WSGSE---GGGI 264 (1115)
Q Consensus 206 LaSGS~Dgt-------------IrlWdl~~~~~~~~~~~~~~~~l--~G-H~~~V~sVafSpdG~-L-~SgS~---DgtI 264 (1115)
|+.++.|.. |++|++.++.. .....+ .+ |...+.++.+||||+ | ++.+. +..|
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~------~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE------DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGG------GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcc------cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 999998854 99999986321 112233 34 566788999999998 4 45443 3589
Q ss_pred EEEeCCCc
Q 001245 265 KIWPWEAI 272 (1115)
Q Consensus 265 rvWdl~t~ 272 (1115)
.+||++++
T Consensus 262 ~~~d~~~~ 269 (693)
T 3iuj_A 262 YVKDLSQE 269 (693)
T ss_dssp EEEETTST
T ss_pred EEEECCCC
Confidence 99998765
No 246
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.36 E-value=9.5e-07 Score=95.19 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=24.7
Q ss_pred eEEEEEEeCCCCCCch-hhhccccCCCCCceeEEEEEecccCc
Q 001245 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMG 595 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~-~L~~wl~~~~~~~Di~viGlQEi~~~ 595 (1115)
+-|.||||++...... .+.+++.. .+||| |+|||+...
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~~ 40 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA--SGADI--VCVQELKAQ 40 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH--TTCSE--EEEECCCCC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh--cCCCE--EEEEEecch
Confidence 5689999986432222 26666652 45775 788999653
No 247
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.36 E-value=9.3e-07 Score=97.26 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=26.0
Q ss_pred ccceEEEEEEeCCCCCCchh-hhccccCCCCCceeEEEEEecccCc
Q 001245 551 NLKILAGTWNVGQGRASQDA-LISWLGSAASDVGIVVVGLQEVEMG 595 (1115)
Q Consensus 551 ~irI~v~TWNv~~~~~~~~~-L~~wl~~~~~~~Di~viGlQEi~~~ 595 (1115)
.-.+-|.||||++....... +..+|.. .+|| ||+|||+...
T Consensus 26 ~~~l~v~t~Ni~~~~~~~~~~i~~~i~~--~~~D--Ii~LQE~~~~ 67 (285)
T 2o3h_A 26 PATLKIASWNVDGLRAWIKKKGLDWVKE--EAPD--ILCLQETKCS 67 (285)
T ss_dssp BCCEEEEEEECSSHHHHHHTTHHHHHHH--HCCS--EEEEECCCCC
T ss_pred ccceEEEEEecccChhhhhhhHHHHHHh--cCCC--EEEEEEeecc
Confidence 34688999999864322122 5556642 3567 5889999653
No 248
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.36 E-value=2.3e-06 Score=92.13 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=66.2
Q ss_pred ceEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccCccchhhhhhhhhhhcCCCCcchhhHHHHHhcccCCCCc
Q 001245 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEMGAGFLAMSAAKETVGLEGSAVGHWWLDMIGKILDDGST 632 (1115)
Q Consensus 553 rI~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~~~~~~~~~~~ke~~~~~~s~~~~~W~~~l~~~L~~~~~ 632 (1115)
.+-|.||||++.....+.+..|+.. .+|| ||+|||+....... +.. . . .
T Consensus 19 ~lri~s~Nv~~~~~~~~~l~~~i~~--~~~D--Iv~lQE~~~~~~~~-----------------------~~~-~-~--g 67 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAAT--RKAA--IALIQEPYVGGAKS-----------------------MKG-F-R--G 67 (245)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHH--HTCS--EEEEESCCC-----------------------------CC-C-S--S
T ss_pred ceeeeeeeccccHHHHHHHHHHHhh--cCCC--EEEEEcccccCCcc-----------------------ccC-C-C--c
Confidence 4789999999765444567777763 3566 58899985421100 000 0 1 1
Q ss_pred eEEEeee----ccccEEEEEEEec-cccCccCceeeeeeeeeccccccCcceEEEEEEEecEEEEEEeecccccchhHHH
Q 001245 633 FERVGSR----QLAGLLIAVWVRK-NLKDYVGDVDVAAVPCGFGRAIGNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNR 707 (1115)
Q Consensus 633 y~~v~s~----~L~Gi~l~vfvr~-~l~~~i~~v~~~~v~tG~~g~~gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~ 707 (1115)
|..+... .-.|+ .+|.++ .+ +. . .+. ..-..|++.+.+...+..|.|+|+|+..+.. .+.
T Consensus 68 y~~~~~~~~~~~~~Gv--aIl~~~~~~-~~------~----~~~-~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~ 132 (245)
T 1wdu_A 68 VRVFQSTAQGDGTVKA--AIAVFDHDL-DV------I----QYP-QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IES 132 (245)
T ss_dssp CEEEECCCCTTCCCCE--EEEECCSSC-EE------E----ECT-TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SHH
T ss_pred ceEeccccccCCCCCe--EEEEECCCc-ce------E----Eec-ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHH
Confidence 2222111 11343 455543 22 11 0 111 1235788889998888899999999987753 234
Q ss_pred HHHHHHHHHH
Q 001245 708 RNADFDHVYR 717 (1115)
Q Consensus 708 Rn~d~~~I~~ 717 (1115)
+.+.+..+++
T Consensus 133 ~~~~l~~~~~ 142 (245)
T 1wdu_A 133 YLEQIKRVER 142 (245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555554
No 249
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.35 E-value=0.00011 Score=82.57 Aligned_cols=211 Identities=13% Similarity=0.115 Sum_probs=124.7
Q ss_pred CeEEE-e-CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001245 143 EQLWA-G-GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMCWKM 220 (1115)
Q Consensus 143 ~~l~a-g-~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrlWdl 220 (1115)
+.+|. + .++.|.+||.+++.... + .. ...+.+++++++|+++++. .+ .|.+||.
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~------------------~---~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTV------------------H---AL-PFMGSALAKISDSKQLIAS-DD-GLFLRDT 116 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEE------------------E---EC-SSCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred CEEEEEECCCCEEEEEECCCCcEEE------------------E---EC-CCcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence 45544 3 56799999988764321 1 11 2468899999999877754 44 4999998
Q ss_pred CCCCCCCCCCCcceEEeec----C-CCCEEEEEEeCCCcEEEEeCC-----CcEEEEeCCCcceeeccCCCcceeEEEEe
Q 001245 221 NARLLDSDDGFGEVLSWQA----H-RGPVLSLCISSYGDLWSGSEG-----GGIKIWPWEAIEKALSLKPEERHTAALIV 290 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~G----H-~~~V~sVafSpdG~L~SgS~D-----gtIrvWdl~t~~~~l~~~~~~~~~~a~~~ 290 (1115)
.++. ...+.. + ...+++++++|+|+++-++.+ +..+||.+++++.. .+
T Consensus 117 ~~g~---------~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~-----------~~-- 174 (326)
T 2ghs_A 117 ATGV---------LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-----------KL-- 174 (326)
T ss_dssp TTCC---------EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-----------EE--
T ss_pred CCCc---------EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE-----------Ee--
Confidence 7632 222222 1 235899999999997644321 34556655332211 00
Q ss_pred eeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcC--Cc-cEEEEEecCCceeeEEeccCCCC
Q 001245 291 ERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDAR--TR-ELLKVFNIDGQIENRVDMSLLPD 365 (1115)
Q Consensus 291 ~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~--tg-~ll~tl~~~~~~~~~v~~s~~~~ 365 (1115)
.... .....+++++++..++.+. .+.|.+||+. +| ++.. ..
T Consensus 175 -------~~~~----------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----~~------------ 220 (326)
T 2ghs_A 175 -------FADI----------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----AE------------ 220 (326)
T ss_dssp -------EEEE----------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----CE------------
T ss_pred -------eCCC----------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----ce------------
Confidence 0000 1223566777776654432 3678888864 44 2100 00
Q ss_pred ccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEe-CCCeEEE
Q 001245 366 FAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGG-ANGLLLQ 444 (1115)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS-~DgtIkl 444 (1115)
.+.. +......+..+++.++|.++.+. .++.|.+
T Consensus 221 ----------~~~~-----------------------------------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 221 ----------VFID-----------------------------------STGIKGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp ----------EEEE-----------------------------------CTTSSSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred ----------EEEE-----------------------------------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 0000 00011123457788888887655 4678999
Q ss_pred EcCCCCeeEEeecCCCcEEEEEe---cCCEEEeeecc
Q 001245 445 WDPNGNRLQDFQYLPFAVQCLCT---FGSQIWVGYMN 478 (1115)
Q Consensus 445 WD~tG~~l~tl~gH~~~V~sla~---dG~~LaSGs~D 478 (1115)
||.+|+.+..+..+...++++++ +++.|++++..
T Consensus 256 ~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 99999999888887778999883 56777666543
No 250
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.35 E-value=4.1e-06 Score=90.26 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=25.8
Q ss_pred eEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEecccC
Q 001245 554 ILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVEM 594 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~~ 594 (1115)
+-|.||||++.....+.+.+++.. .+||| |+|||+..
T Consensus 2 lrv~t~Nv~g~~~~~~~i~~~i~~--~~~Di--i~lQE~~~ 38 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHIVIPWLKE--NKPDI--LCMQETKV 38 (257)
T ss_dssp EEEEEEECSCGGGTHHHHHHHHHH--HCCSE--EEEECCCC
T ss_pred eEEEEEecCChHHHHHHHHHHHhh--cCCCE--EEEEEeec
Confidence 568999998765444556666652 35665 78999965
No 251
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.34 E-value=1.8e-05 Score=98.57 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=39.8
Q ss_pred ccEEEEEeCC-CccccccccccCCEE-EEEecCCEEEeecCCCceEEeeecCC
Q 001245 478 NGIVQVLDLE-GNLLGGWVAHSSPVI-KMAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 478 DGtIrlWD~~-G~ll~~l~gH~~~V~-sva~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
+|+|..||+. |+.+-....|..... .+...|..++.|+.|+.++.||..+.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 5899999986 888776665543322 34568889999999999999998874
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=0.00071 Score=85.16 Aligned_cols=323 Identities=15% Similarity=0.196 Sum_probs=181.0
Q ss_pred eeeEEEEEe-CCe-EEEeCCC-CEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC--CCCEEE
Q 001245 133 CFLRTIVCT-EEQ-LWAGGEN-GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE--ASGVVW 207 (1115)
Q Consensus 133 ~~l~~l~~~-~~~-l~ag~D~-tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~--dg~~La 207 (1115)
..++.|..+ ++. ||.|..+ .+-.||..++..... ..... ...... ...|.++..+. +| .||
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~------~~~~~------~~~~l~-~~~i~~i~~d~~~~g-~lw 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVY------QYNPE------DPQSLI-TNDVTHITSSVQAGK-GLW 131 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEE------CCCTT------CSSSCS-CSCEEEEEECSSTTS-EEE
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEee------ccccC------CCCCcc-cCcceEEEecCccCC-CEE
Confidence 346667665 577 9998766 999999886543220 00000 000011 34688998887 65 567
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCcceEEeec------CCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA------HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G------H~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
-|..++-|..+|..++. ...+.. ....|.+|+..++|.||-|..++-|..+|..+.+... +.
T Consensus 132 i~t~~~gl~~~~~~~~~---------~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-~~-- 199 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGK---------FTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKH-FV-- 199 (781)
T ss_dssp EEESSSCEEEEETTTTE---------EEEESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEE-EC--
T ss_pred EEECCCCeeEEECCCCe---------EEeeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEe-ee--
Confidence 77755557788876521 222211 1356999999999999888877668889987643210 00
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEecc
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMS 361 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s 361 (1115)
+.. ......+...+.+++.+.++ .||.+....+.+||..+++........... ...+
T Consensus 200 ------------------~~~-~~~~~l~~~~i~~i~~d~~g-~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~---~~l~ 256 (781)
T 3v9f_A 200 ------------------HDP-QNPNSLPGNDVRCIYKDTNG-NIWIGTSKGLALFNANTETFTNFHNNPGNI---HGAL 256 (781)
T ss_dssp ------------------C---------CCSSEEEEEECTTC-CEEEEETTEEEEEETTTTEEEC--------------C
T ss_pred ------------------cCC-CCcccCCCCceeEEEEcCCC-CEEEEeCCcHheECCCCCcEEEEEcCCCcc---cccc
Confidence 000 00001122457777777654 466666568999998887654322111000 0000
Q ss_pred CCCCccccccceEEEEecCCCCccceeeeeeccccceEEecc-CcEEEEeccc-cc------------------ccCCCc
Q 001245 362 LLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAA-DAVRRVAAKG-GF------------------GDDNRR 421 (1115)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~-d~v~~~~~~g-~l------------------~~h~~~ 421 (1115)
.. ...++.... ...+-+|.. +++.+++... .+ .-....
T Consensus 257 ~~---------------------~i~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~ 314 (781)
T 3v9f_A 257 SS---------------------YIFSIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNAS 314 (781)
T ss_dssp CC---------------------CEEEEEECT-TSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSC
T ss_pred Cc---------------------eEEEEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCe
Confidence 00 000000001 111222332 3444443321 00 112356
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEcCCCCeeEEeec----------CCCcEEEEEecC-CEEEeeecccEEEEEeCCCcc
Q 001245 422 TEALTTSIDGMIWTGGANGLLLQWDPNGNRLQDFQY----------LPFAVQCLCTFG-SQIWVGYMNGIVQVLDLEGNL 490 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~DgtIklWD~tG~~l~tl~g----------H~~~V~sla~dG-~~LaSGs~DGtIrlWD~~G~l 490 (1115)
|.++....+|.||.|+.++-|..|+......+.+.. ....|.+++.|. ..|+.|+.++-|.+||.....
T Consensus 315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~ 394 (781)
T 3v9f_A 315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV 394 (781)
T ss_dssp EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE
T ss_pred EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe
Confidence 889999999999999988889999985433333321 235699999663 578888876668899976332
Q ss_pred cccc----ccccCCEEEEEec-CCEEEeecCCCceEEeeec
Q 001245 491 LGGW----VAHSSPVIKMAVG-AGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 491 l~~l----~gH~~~V~sva~d-g~~laSgS~DgtIRlWdl~ 526 (1115)
...+ ......|.++..| ...|+-|+.++.+..++..
T Consensus 395 ~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 395 AIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR 435 (781)
T ss_dssp EECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSS
T ss_pred EEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCC
Confidence 2222 1234578999875 4456667777778888754
No 253
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.30 E-value=4.6e-05 Score=94.97 Aligned_cols=80 Identities=25% Similarity=0.415 Sum_probs=56.9
Q ss_pred CCeEEEEcC-CCCeeEEeecCCCcEE-EEEecCCEEEeeecccEEEEEeCC-CccccccccccCCE---EEEEecCC-EE
Q 001245 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ-CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG-YI 511 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~gH~~~V~-sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V---~sva~dg~-~l 511 (1115)
+|+|+.||+ +|+.+-++..+..... .+...|.+++.|+.||+|+.||.+ |+++.+++.+.+.+ .....+|+ |+
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 588999999 8998877766543222 444688999999999999999986 99988877554322 22246775 56
Q ss_pred EeecCCC
Q 001245 512 FTLANHG 518 (1115)
Q Consensus 512 aSgS~Dg 518 (1115)
+..+..|
T Consensus 534 ~~~~G~g 540 (689)
T 1yiq_A 534 TFMAGWG 540 (689)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 6554433
No 254
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.30 E-value=2.4e-07 Score=106.67 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=54.0
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEec
Q 001245 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVG 507 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~d 507 (1115)
++.+++|+.|++|..||. +|+++.++..+.. ...++++..|++|+.|++|+.||.+ |+++..+..+. ..+.+++
T Consensus 92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~ 167 (369)
T 2hz6_A 92 DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPE 167 (369)
T ss_dssp ---CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCC
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcccc
Confidence 456777888999999999 8999888776542 2334689999999999999999986 88766654332 1222333
Q ss_pred C-----CEEEeecCCCceEEeeecCC
Q 001245 508 A-----GYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 508 g-----~~laSgS~DgtIRlWdl~~p 528 (1115)
+ ..++.++.|+.|+.||..+.
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred CCccccceEEEECCCCEEEEEECCCC
Confidence 3 56788889999999998763
No 255
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.30 E-value=3.3e-05 Score=96.04 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=67.8
Q ss_pred eCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCC--ceeeeccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001245 141 TEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAP--FKESVKGVSSVMCMVGDEASGVVWSGHRDGRIMC 217 (1115)
Q Consensus 141 ~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~--~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtIrl 217 (1115)
.++.+++ +.++.|.-+|++||..+.... .. ......+ +.... .. .+++ ++..|+.++.|+.+..
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~-----~~-~~~~~~~~~~~~~~--~~---~~a~--~~~~v~v~~~dg~l~a 142 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYD-----PQ-IDRSTGFKGCCDVV--NR---GVAL--WKGKVYVGAWDGRLIA 142 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEEC-----CC-CCGGGGGGSSSCSC--CC---CCEE--ETTEEEEECTTSEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEc-----CC-CCccccccccccCC--CC---CceE--ECCEEEEEcCCCEEEE
Confidence 4777877 457899999999998776410 00 0000000 00000 01 1223 4678999999999999
Q ss_pred EECCCCCCCCCCCCcceEEeecC-C----CCEEEEEEeCCCcEEEEeC------CCcEEEEeCCCcceeecc
Q 001245 218 WKMNARLLDSDDGFGEVLSWQAH-R----GPVLSLCISSYGDLWSGSE------GGGIKIWPWEAIEKALSL 278 (1115)
Q Consensus 218 Wdl~~~~~~~~~~~~~~~~l~GH-~----~~V~sVafSpdG~L~SgS~------DgtIrvWdl~t~~~~l~~ 278 (1115)
+|..+| +.+.++..+ . ..+++--+-.++.++.++. |+.|+.+|.++++....+
T Consensus 143 lD~~tG--------~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 143 LDAATG--------KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EETTTC--------CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EECCCC--------CEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 999874 334444433 1 1222211122556655443 799999999998876443
No 256
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.30 E-value=8.9e-07 Score=99.67 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=25.0
Q ss_pred cceEEEEEEeCCCCCCch-hhhccccCCCCCceeEEEEEecccC
Q 001245 552 LKILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEM 594 (1115)
Q Consensus 552 irI~v~TWNv~~~~~~~~-~L~~wl~~~~~~~Di~viGlQEi~~ 594 (1115)
-.+-|.||||++...... .+..+|.. .+||| |+|||+..
T Consensus 60 ~~lrv~t~Nv~g~~~~~~~~i~~~i~~--~~~DI--i~LQE~~~ 99 (318)
T 1hd7_A 60 ATLKICSWNVDGLRAWIKKKGLDWVKE--EAPDI--LCLQETKC 99 (318)
T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHH--HCCSE--EEEECCCC
T ss_pred CceEEEEEecCcchhhhhhhHHHHHHh--hCCCE--EEEEEccC
Confidence 468899999985432111 25566642 35665 78999965
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=0.00098 Score=83.88 Aligned_cols=316 Identities=16% Similarity=0.244 Sum_probs=177.4
Q ss_pred eeEEEEEe-CCeEEEeCC-CCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeC
Q 001245 134 FLRTIVCT-EEQLWAGGE-NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHR 211 (1115)
Q Consensus 134 ~l~~l~~~-~~~l~ag~D-~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~ 211 (1115)
.++.+..+ ++.+|+|.+ +.|.++|..++...... . ....+-.+. . ...+.. ...|.++..|.+|. ||-|..
T Consensus 259 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-~-~~f~~~~~~-~--~~~~l~-~~~v~~i~~D~~g~-lWigt~ 331 (781)
T 3v9f_A 259 YIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE-Q-IRFEFIREG-D--NNYSLS-NASARYIFQDSFNN-IWIGTW 331 (781)
T ss_dssp CEEEEEECTTSEEEEEESSSCEEEEETTCC-----------CEEECBC-S--STTSBS-SSCEEEEEECSSCC-EEEEEB
T ss_pred eEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee-c-cccccccCC-C--CCCCCC-CCeEEEEEEeCCCC-EEEEec
Confidence 45566554 789999876 89999998766432210 0 000000000 0 001123 56799999999875 888998
Q ss_pred CCeEEEEECCCCCCCCCCCCcceEEee-------c---CCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCC
Q 001245 212 DGRIMCWKMNARLLDSDDGFGEVLSWQ-------A---HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPE 281 (1115)
Q Consensus 212 DgtIrlWdl~~~~~~~~~~~~~~~~l~-------G---H~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~ 281 (1115)
++-|..++..++. ...+. . ....|.+|+..++|.||-|+.++-|..|+..+..... +..
T Consensus 332 ~~Gl~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~- 400 (781)
T 3v9f_A 332 GGGINFISNAPPT---------FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIY-NKE- 400 (781)
T ss_dssp SSCEEEECSSCCS---------CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEEC-C---
T ss_pred CCeEEEeCCCCCc---------ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEE-ccC-
Confidence 8889899877521 11121 0 2457999999999999999987779999986542210 000
Q ss_pred cceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecC-CeEEEEEcCCccEEEEEec--CCceeeEE
Q 001245 282 ERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGF-LSFALWDARTRELLKVFNI--DGQIENRV 358 (1115)
Q Consensus 282 ~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd-~tI~lWD~~tg~ll~tl~~--~~~~~~~v 358 (1115)
.. ..+...|.+++.+.++ .||.+.. +.+..+|..+++..+.... ....+.++
T Consensus 401 ------------------~~------~~~~~~v~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 401 ------------------NR------ELLSNSVLCSLKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp ---------------------------CCCSBEEEEEECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred ------------------CC------CCCCcceEEEEECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 00 0122457777776554 5676664 6799999888765332110 00001100
Q ss_pred eccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecc-cccc---------cCCCceEEEEEc
Q 001245 359 DMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAK-GGFG---------DDNRRTEALTTS 428 (1115)
Q Consensus 359 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~-g~l~---------~h~~~V~aVa~S 428 (1115)
....+ ..+-+|...++.+++.. +.+. .....|.+++..
T Consensus 456 -------------------------------~~d~~-g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 456 -------------------------------YEDKN-KKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp -------------------------------EECTT-SEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC
T ss_pred -------------------------------EECCC-CCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEc
Confidence 00001 11222333445554432 1111 013568899999
Q ss_pred CCCcEEEEeCCCeEEEEcCCCCeeEEeec----CCCcEEEEEec-CCEEEeeecccEEEEEeCCCccccccccc----cC
Q 001245 429 IDGMIWTGGANGLLLQWDPNGNRLQDFQY----LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWVAH----SS 499 (1115)
Q Consensus 429 ~Dg~laSGS~DgtIklWD~tG~~l~tl~g----H~~~V~sla~d-G~~LaSGs~DGtIrlWD~~G~ll~~l~gH----~~ 499 (1115)
++|.||.|+.++-+..||..+.....+.. ....|.+|..| ...|+.|+.+|-|..||.+......+... ..
T Consensus 504 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~ 583 (781)
T 3v9f_A 504 SEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNT 583 (781)
T ss_dssp TTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCC
T ss_pred CCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCc
Confidence 99999999985557779985555555432 13468999854 34577777788768899764333333222 23
Q ss_pred CEEEEEec-CCEEEeecCCCceEEeee
Q 001245 500 PVIKMAVG-AGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 500 ~V~sva~d-g~~laSgS~DgtIRlWdl 525 (1115)
.|.++..| ...|+-++.+| |-.++.
T Consensus 584 ~i~~i~~d~~g~lW~~t~~G-l~~~~~ 609 (781)
T 3v9f_A 584 HIRAISEDKNGNIWASTNTG-ISCYIT 609 (781)
T ss_dssp CCCEEEECSSSCEEEECSSC-EEEEET
T ss_pred eEEEEEECCCCCEEEEcCCc-eEEEEC
Confidence 57777764 22444444444 555553
No 258
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.23 E-value=0.00013 Score=80.61 Aligned_cols=237 Identities=15% Similarity=0.088 Sum_probs=127.5
Q ss_pred eEEeecCCCCEEEEEEeCCCc--EEEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeec
Q 001245 234 VLSWQAHRGPVLSLCISSYGD--LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILT 311 (1115)
Q Consensus 234 ~~~l~GH~~~V~sVafSpdG~--L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s 311 (1115)
+..+..+.....+.+|+|+|+ ++++..++.|..|+.. ++.. . +.. +.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~-~-------------------~~~----------~~ 85 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD-V-------------------LLD----------AT 85 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE-E-------------------EEE----------SC
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE-E-------------------EeC----------CC
Confidence 334555566788999999997 5788889999999974 3211 0 000 11
Q ss_pred CCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEec-CCce---eeEEeccCCCCccccccceEEEEec---CCCC
Q 001245 312 SDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNI-DGQI---ENRVDMSLLPDFAMEDEFKTKIVTS---SKKD 383 (1115)
Q Consensus 312 ~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~-~~~~---~~~v~~s~~~~~~~~~~~~~~~~~~---~~~~ 383 (1115)
.....++.++++..+++.. ...|.+||.. |+....... .+.. .+.+.+.+ +..+++... ....
T Consensus 86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~--------dG~l~~td~~~g~~~~ 156 (305)
T 3dr2_A 86 AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR--------DGAIWFTDPPFGLRKP 156 (305)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT--------TSCEEEECCSGGGSCG
T ss_pred CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC--------CCCEEEeCcCCCcccc
Confidence 3455677788776444433 3679999985 664332211 1111 11122222 112222110 0000
Q ss_pred ccceeeeeeccccceEE-eccCcEEEEecc-ccccc--CCCceEEEEEcCCCc-EEEEeCC------CeEEEEcCCCCee
Q 001245 384 KAQSSFGFFQRSRNAIM-GAADAVRRVAAK-GGFGD--DNRRTEALTTSIDGM-IWTGGAN------GLLLQWDPNGNRL 452 (1115)
Q Consensus 384 ~~~~~v~f~~~~~~~~~-Gs~d~v~~~~~~-g~l~~--h~~~V~aVa~S~Dg~-laSGS~D------gtIklWD~tG~~l 452 (1115)
. .+..... .....+.+++.. +.+.. .....+.+++++|+. |+.+... +.|.+||+.+..+
T Consensus 157 ~---------~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l 227 (305)
T 3dr2_A 157 S---------QGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL 227 (305)
T ss_dssp G---------GSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE
T ss_pred c---------cccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc
Confidence 0 0000000 001234444431 22211 233467799999997 7666554 7899999833213
Q ss_pred E---Eee-cCCCcEEEEE--ecCCEEEeeecccEEEEEeCCCccccccccccCCEEEEEe--cCCEEEeecCCCceEE
Q 001245 453 Q---DFQ-YLPFAVQCLC--TFGSQIWVGYMNGIVQVLDLEGNLLGGWVAHSSPVIKMAV--GAGYIFTLANHGGIRG 522 (1115)
Q Consensus 453 ~---tl~-gH~~~V~sla--~dG~~LaSGs~DGtIrlWD~~G~ll~~l~gH~~~V~sva~--dg~~laSgS~DgtIRl 522 (1115)
. .+. ........++ ++|. |+++..+| |.+||.+|+.+..+..+. .+.++++ +++.|+.++.++..++
T Consensus 228 ~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 228 HDRRHFASVPDGLPDGFCVDRGGW-LWSSSGTG-VCVFDSDGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp EEEEEEECCSSSCCCSEEECTTSC-EEECCSSE-EEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred cCCeEEEECCCCCCCeEEECCCCC-EEEecCCc-EEEECCCCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 2 111 1122233444 5677 66666665 999999998888777665 4777776 6777877766654443
No 259
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.19 E-value=3.7e-05 Score=88.57 Aligned_cols=90 Identities=7% Similarity=-0.213 Sum_probs=65.0
Q ss_pred CEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECC
Q 001245 152 GLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKMN 221 (1115)
Q Consensus 152 tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS----------~DgtIrlWdl~ 221 (1115)
+|-|.|.++++.+.+ .. . |..+ .++++|||+.|+.+. .|++|.+||+.
T Consensus 47 ~vsvID~~t~~v~~~------------------i~-v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~ 104 (368)
T 1mda_H 47 ENWVSCAGCGVTLGH------------------SL-G-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV 104 (368)
T ss_dssp EEEEEETTTTEEEEE------------------EE-E-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred eEEEEECCCCeEEEE------------------Ee-C-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence 888999998876653 11 1 2345 699999999999997 47899999998
Q ss_pred CCCCCCCCCCcceEEeecC-------CCCEEEEEEeCCCc-EEEEeC--CCcEEE--EeCCC
Q 001245 222 ARLLDSDDGFGEVLSWQAH-------RGPVLSLCISSYGD-LWSGSE--GGGIKI--WPWEA 271 (1115)
Q Consensus 222 ~~~~~~~~~~~~~~~l~GH-------~~~V~sVafSpdG~-L~SgS~--DgtIrv--Wdl~t 271 (1115)
++ +.+.++.-+ -.....++|||||+ |+.+.. +.+|.+ ||+.+
T Consensus 105 T~--------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 105 TF--------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TC--------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CC--------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 73 334555322 02245799999997 766653 467888 99866
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.17 E-value=0.00034 Score=77.94 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeec--------------------CCCCEEEEEEeC-
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA--------------------HRGPVLSLCISS- 251 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G--------------------H~~~V~sVafSp- 251 (1115)
...+++++++|.+++++..++.|..|+..++. ...+.. ..+.+.+|++.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~ 90 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG---------FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ 90 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC---------EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc---------eEEEecccccccccccccccchhccccCCCCceEEEcCC
Confidence 34568899999989999999999999987521 222321 123578999997
Q ss_pred CCcEEEEeCCCcEEEEeCCCc
Q 001245 252 YGDLWSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 252 dG~L~SgS~DgtIrvWdl~t~ 272 (1115)
+|.|+-+...+.|..+|.+++
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g 111 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGG 111 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCE
T ss_pred CCcEEEEECCCCEEEEeCCCC
Confidence 788877766666888887654
No 261
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.12 E-value=4e-05 Score=88.82 Aligned_cols=133 Identities=8% Similarity=0.005 Sum_probs=100.5
Q ss_pred eeeeeeccccceEEeccCcEEEEecc----------c-----ccccCCCceEEEEEcCCCc-EEEEeCCCeEEEEcC-CC
Q 001245 387 SSFGFFQRSRNAIMGAADAVRRVAAK----------G-----GFGDDNRRTEALTTSIDGM-IWTGGANGLLLQWDP-NG 449 (1115)
Q Consensus 387 ~~v~f~~~~~~~~~Gs~d~v~~~~~~----------g-----~l~~h~~~V~aVa~S~Dg~-laSGS~DgtIklWD~-tG 449 (1115)
..+++++....+++|+.++++.|..+ + ....+.. |..|+| |+. |+++ .++.|++||+ +-
T Consensus 41 nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp BCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred cEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 45667777777888888888887642 0 1122345 999999 655 6676 8899999998 44
Q ss_pred CeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEEEEecCCEEEeecCCCceEEeeecC
Q 001245 450 NRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 450 ~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~sva~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.....+..|...|.++.+-...+|+++.||+|.+||++ ++... +...|.|+++.++-++.|..||+|++|+...
T Consensus 117 ~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 117 SEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp TCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred hccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEcCCcEEEEcCCC
Confidence 45556677888898888655559999999999999997 55432 5678999998766688999999999997653
No 262
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.10 E-value=0.00039 Score=81.50 Aligned_cols=95 Identities=7% Similarity=-0.119 Sum_probs=66.9
Q ss_pred CCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEe----------CCCeEEEEEC
Q 001245 151 NGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGH----------RDGRIMCWKM 220 (1115)
Q Consensus 151 ~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS----------~DgtIrlWdl 220 (1115)
++|.|.|++++..... .. . |..+ -++++|||+.|+.+. .+++|-++|.
T Consensus 99 ~~VsVID~~t~~vv~~------------------I~-v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 99 TQQFVIDGSTGRILGM------------------TD-G-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp EEEEEEETTTTEEEEE------------------EE-E-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CeEEEEECCCCEEEEE------------------EE-C-CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 6999999998876653 11 1 2344 699999999998886 4789999999
Q ss_pred CCCCCCCCCCCcceEEee-c------CCCCEEEEEEeCCCc-EEEEeC--CCcEEEEeCCCccee
Q 001245 221 NARLLDSDDGFGEVLSWQ-A------HRGPVLSLCISSYGD-LWSGSE--GGGIKIWPWEAIEKA 275 (1115)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~-G------H~~~V~sVafSpdG~-L~SgS~--DgtIrvWdl~t~~~~ 275 (1115)
.+. +.+.++. + +...-..++|+|||+ |+.+.. +++|-+.|+.+.+..
T Consensus 157 ~t~--------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 157 VTF--------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp TTC--------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCC--------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence 873 2233332 1 012235789999998 666553 689999999886543
No 263
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.06 E-value=0.00056 Score=80.20 Aligned_cols=269 Identities=8% Similarity=0.011 Sum_probs=147.9
Q ss_pred CCCCEEEEEeC-C----CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe----------CCCcE
Q 001245 201 EASGVVWSGHR-D----GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS----------EGGGI 264 (1115)
Q Consensus 201 ~dg~~LaSGS~-D----gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS----------~DgtI 264 (1115)
+++..++.... + ++|-+.|+++. +.+.++.--..+ .|+|||||+ |+.+. .+++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG--------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT--------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC--------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 45665555544 2 69999999873 334444322346 899999998 65443 47799
Q ss_pred EEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec---CCeEEEEEcCC
Q 001245 265 KIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG---FLSFALWDART 341 (1115)
Q Consensus 265 rvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s---d~tI~lWD~~t 341 (1115)
-++|..+++..-.+ .+.+.... ... ..-..+++++++..++.+. .++|.+.|+.+
T Consensus 152 sviD~~t~~vv~~I-----------------~v~g~~r~-~~g----~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 152 EVFDPVTFLPIADI-----------------ELPDAPRF-LVG----TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp EEECTTTCCEEEEE-----------------EETTCCCC-CBS----CCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred EEEECCCCcEEEEE-----------------ECCCcccc-ccC----CCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence 99999886543111 11000000 000 0112345677787777653 46899999999
Q ss_pred ccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccC-cEEEEecccccccCCC
Q 001245 342 RELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAAD-AVRRVAAKGGFGDDNR 420 (1115)
Q Consensus 342 g~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d-~v~~~~~~g~l~~h~~ 420 (1115)
++.++++...+.. ...+.. . ...+.+..+++.+...... .+..... ..+.-...
T Consensus 210 ~kvv~~I~v~g~~----~~~p~g----------------~----~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~ 264 (426)
T 3c75_H 210 KTFDRMLDVPDCY----HIFPAS----------------P----TVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDE 264 (426)
T ss_dssp TEEEEEEECCSEE----EEEEEE----------------T----TEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTS
T ss_pred CeEEEEEEcCCce----eeccCC----------------C----cEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCC
Confidence 9999887542211 000000 0 0011222333222222111 1110000 00100011
Q ss_pred c-eEEEEEcCCCc-EEEEeCCCeEEEEcCCCCee---EEee------------cCCCcEEEEEecCCEEEeeec------
Q 001245 421 R-TEALTTSIDGM-IWTGGANGLLLQWDPNGNRL---QDFQ------------YLPFAVQCLCTFGSQIWVGYM------ 477 (1115)
Q Consensus 421 ~-V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l---~tl~------------gH~~~V~sla~dG~~LaSGs~------ 477 (1115)
. ...+.+++++. ++..+..++|.+.|..+..+ .++. .+......+.+||++|+++..
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 1 11245677765 66666788899999843321 1111 111112356689998888753
Q ss_pred ----ccEEEEEeCC-CccccccccccCCEEEEE--ecCC-EEEeec-CCCceEEeeecC
Q 001245 478 ----NGIVQVLDLE-GNLLGGWVAHSSPVIKMA--VGAG-YIFTLA-NHGGIRGWNVTS 527 (1115)
Q Consensus 478 ----DGtIrlWD~~-G~ll~~l~gH~~~V~sva--~dg~-~laSgS-~DgtIRlWdl~~ 527 (1115)
+++|.+.|+. ++.+.++..-. ..++|+ .||+ +++++. .+++|-++|+.+
T Consensus 345 hk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 345 HKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred ccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 4689999987 77777775322 245555 5888 888876 599999999876
No 264
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.06 E-value=6.7e-06 Score=89.52 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=25.0
Q ss_pred eEEEEEEeCCCCCCch-hhhccccCCCCCceeEEEEEecccCc
Q 001245 554 ILAGTWNVGQGRASQD-ALISWLGSAASDVGIVVVGLQEVEMG 595 (1115)
Q Consensus 554 I~v~TWNv~~~~~~~~-~L~~wl~~~~~~~Di~viGlQEi~~~ 595 (1115)
+-|.||||++...... .+.+|+.. .+||| |+|||+...
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~--~~~DI--v~LQEt~~~ 42 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME--EKPDI--LCLQEIKAA 42 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH--HCCSE--EEEECCCSC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh--cCCCE--EEEEecccc
Confidence 5789999996543222 36677753 34664 789998653
No 265
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.90 E-value=0.0011 Score=82.50 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=50.2
Q ss_pred CCeEEEEcC-CCCeeEEeecCCCcEE--EEEecCCEEEeeecccEEEEEeCC-CccccccccccC---CEEEEEecCCEE
Q 001245 439 NGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS---PVIKMAVGAGYI 511 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~gH~~~V~--sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~---~V~sva~dg~~l 511 (1115)
.++|..||+ +|+.+-++..+ .++. .+..+|.+++.|+.||++++||++ |+++.++.-..+ .......+|+..
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 378999999 89887766543 2222 244688899999999999999986 998887764432 111123677643
No 266
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.88 E-value=0.00036 Score=78.72 Aligned_cols=64 Identities=8% Similarity=-0.005 Sum_probs=40.6
Q ss_pred EEEEE--ecCCEEEeeeccc-EEEEEeCC----Cc-----cccc--cccccCCEEEEEe--cCCEEEeecCCCceEEeee
Q 001245 462 VQCLC--TFGSQIWVGYMNG-IVQVLDLE----GN-----LLGG--WVAHSSPVIKMAV--GAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 462 V~sla--~dG~~LaSGs~DG-tIrlWD~~----G~-----ll~~--l~gH~~~V~sva~--dg~~laSgS~DgtIRlWdl 525 (1115)
+..|+ +||++|+++..++ .|..+|.. +. .... ..++.+....+++ +|...++...++.|.+||.
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 45566 7899999888766 55555421 11 1111 2244444445554 6788888888999999996
No 267
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.79 E-value=0.0015 Score=75.09 Aligned_cols=99 Identities=11% Similarity=0.016 Sum_probs=62.9
Q ss_pred EcCCCcEEEEeCCCeEEEEcCCCC---eeEEee------------cCCCcEEEEEecCCEEEeeec---------ccEEE
Q 001245 427 TSIDGMIWTGGANGLLLQWDPNGN---RLQDFQ------------YLPFAVQCLCTFGSQIWVGYM---------NGIVQ 482 (1115)
Q Consensus 427 ~S~Dg~laSGS~DgtIklWD~tG~---~l~tl~------------gH~~~V~sla~dG~~LaSGs~---------DGtIr 482 (1115)
...++.++..+. ++|.+-|..+. .+.++. .+......+.+||++|+++.. ++.+.
T Consensus 219 ~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 444455655555 88888888432 222221 111122456789999997643 23566
Q ss_pred EEeCC-CccccccccccCCEEEEE--ecCCE-EEeec-CCCceEEeeecC
Q 001245 483 VLDLE-GNLLGGWVAHSSPVIKMA--VGAGY-IFTLA-NHGGIRGWNVTS 527 (1115)
Q Consensus 483 lWD~~-G~ll~~l~gH~~~V~sva--~dg~~-laSgS-~DgtIRlWdl~~ 527 (1115)
++|+. ++.++++.... ....|+ .||++ +++.. .+++|.++|+.+
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 99987 77777776544 356666 47874 56666 599999999876
No 268
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.68 E-value=0.021 Score=61.41 Aligned_cols=198 Identities=11% Similarity=0.149 Sum_probs=114.0
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCC-cEE-EEeCCCcEEEEe
Q 001245 193 SVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG-DLW-SGSEGGGIKIWP 268 (1115)
Q Consensus 193 ~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG-~L~-SgS~DgtIrvWd 268 (1115)
.+..++++++ +.+.++-..++.|..++++++. ...+ .........|++++++ .|+ +-...+.|.+++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 4568999986 4566666678899999998621 1222 2223467899999975 564 666678999999
Q ss_pred CCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-C---CeEEEEEcCCccE
Q 001245 269 WEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-F---LSFALWDARTREL 344 (1115)
Q Consensus 269 l~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d---~tI~lWD~~tg~l 344 (1115)
+++..... + .. .+. ..-..+++++++..|+-+. . ..|..+++. |..
T Consensus 108 ~~g~~~~~-----------~------~~-~~~-----------~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~ 157 (267)
T 1npe_A 108 MDGTQRRV-----------L------FD-TGL-----------VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTN 157 (267)
T ss_dssp TTSCSCEE-----------E------EC-SSC-----------SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCC
T ss_pred cCCCCEEE-----------E------EE-CCC-----------CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCC
Confidence 86532110 0 00 000 1224567777544443221 1 123333321 000
Q ss_pred EEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccceEEeccCcEEEEecccccccCCCceEE
Q 001245 345 LKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEA 424 (1115)
Q Consensus 345 l~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~a 424 (1115)
.+++ . .........
T Consensus 158 ~~~~-------------------------------------------------------------~-----~~~~~~P~g 171 (267)
T 1npe_A 158 RRIL-------------------------------------------------------------A-----QDNLGLPNG 171 (267)
T ss_dssp CEEE-------------------------------------------------------------E-----CTTCSCEEE
T ss_pred cEEE-------------------------------------------------------------E-----ECCCCCCcE
Confidence 0000 0 001123566
Q ss_pred EEEcCCC-cE-EEEeCCCeEEEEcCCCCeeEEeecCCCcEEEEEecCCEEEeee-cccEEEEEeCC-Cccccccc
Q 001245 425 LTTSIDG-MI-WTGGANGLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWV 495 (1115)
Q Consensus 425 Va~S~Dg-~l-aSGS~DgtIklWD~tG~~l~tl~gH~~~V~sla~dG~~LaSGs-~DGtIrlWD~~-G~ll~~l~ 495 (1115)
+++++++ .| ++-...+.|..+|.+|..+..+......-..|++++..|+.+. .++.|.++|.+ |+.+.++.
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 7888864 56 4555568999999976544443322334467787787777776 46899999986 77776664
No 269
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.52 E-value=0.0022 Score=79.53 Aligned_cols=52 Identities=8% Similarity=0.041 Sum_probs=38.4
Q ss_pred cccEEEEEeCC-CccccccccccCCE-EEEEecCCEEEeecCCCceEEeeecCC
Q 001245 477 MNGIVQVLDLE-GNLLGGWVAHSSPV-IKMAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 477 ~DGtIrlWD~~-G~ll~~l~gH~~~V-~sva~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.+|+|..||+. |+.+-....+.... ..++..|..++.++.|+.++.||..+.
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 45999999986 87765554433222 235568889999999999999998764
No 270
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.39 E-value=2.2e-05 Score=98.52 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=0.0
Q ss_pred ecEEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 687 YDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 687 ~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
.+..|+++|+||.++.+.-..|......|++.|
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l 577 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHL 577 (727)
T ss_dssp ---------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHH
Confidence 367899999999876443344555555555443
No 271
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=97.36 E-value=0.00052 Score=79.67 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=25.4
Q ss_pred EEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 689 RIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 689 t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
..|+++|.||..+-+.-..|..+...|++.+
T Consensus 195 ~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l 225 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEYSDVKLIQTMMFVSEV 225 (398)
T ss_dssp CEEEEEEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 4699999999987666677888888888765
No 272
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.36 E-value=0.011 Score=73.28 Aligned_cols=78 Identities=24% Similarity=0.425 Sum_probs=54.0
Q ss_pred eCCCeEEEEcC-CCCeeEEeecCCCcE-EEEEecCCEEEeeecccEEEEEeCC-CccccccccccC----CEEEEEecCC
Q 001245 437 GANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG 509 (1115)
Q Consensus 437 S~DgtIklWD~-tG~~l~tl~gH~~~V-~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~----~V~sva~dg~ 509 (1115)
..+|.|..||+ +|+.+-....+.... ..++..|.+|+.|+.||.+++||.+ |+.+..+....+ ++. ...+|+
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~-~~~~G~ 513 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT-FELAGR 513 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTE
T ss_pred CccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE-EEECCE
Confidence 35689999999 898876655443221 2455689999999999999999987 888877765432 222 245776
Q ss_pred -EEEeec
Q 001245 510 -YIFTLA 515 (1115)
Q Consensus 510 -~laSgS 515 (1115)
+++.++
T Consensus 514 ~yva~~~ 520 (668)
T 1kv9_A 514 QYVAIMA 520 (668)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 555443
No 273
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.32 E-value=0.11 Score=55.52 Aligned_cols=106 Identities=8% Similarity=-0.046 Sum_probs=65.0
Q ss_pred eEEEEEcC-CCcEEEEeC---CCeEEEEcCCCCeeEEee-cCCCcEEEEE--ecCCEEEeee-cccEEEEEeCCCccccc
Q 001245 422 TEALTTSI-DGMIWTGGA---NGLLLQWDPNGNRLQDFQ-YLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLEGNLLGG 493 (1115)
Q Consensus 422 V~aVa~S~-Dg~laSGS~---DgtIklWD~tG~~l~tl~-gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~G~ll~~ 493 (1115)
...+++++ ++.|+.+.. .+.|..++++|...+.+. ........|+ +++++|+.+. ..+.|.++|.+|.....
T Consensus 124 P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 203 (267)
T 1npe_A 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK 203 (267)
T ss_dssp EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred ccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence 45677777 456654443 367888888776655543 2223456666 5677776665 56899999998543332
Q ss_pred cccccCCEEEEEecCCEEEeec-CCCceEEeeecC
Q 001245 494 WVAHSSPVIKMAVGAGYIFTLA-NHGGIRGWNVTS 527 (1115)
Q Consensus 494 l~gH~~~V~sva~dg~~laSgS-~DgtIRlWdl~~ 527 (1115)
+.........|++++..|+-+. ..+.|...|..+
T Consensus 204 ~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 204 VLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp EEECCCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence 2222233467777777666544 557888877543
No 274
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.31 E-value=0.027 Score=68.40 Aligned_cols=117 Identities=9% Similarity=0.065 Sum_probs=64.6
Q ss_pred eCCeEEEe-C-CCCEEEEeC-CCCcccccccccccccCCCCCCCC--CceeeeccCCceEEEEEcCCCCEEEEEeCCCeE
Q 001245 141 TEEQLWAG-G-ENGLRVWNL-KELYDESESDSVSVSKSKGEDGTA--PFKESVKGVSSVMCMVGDEASGVVWSGHRDGRI 215 (1115)
Q Consensus 141 ~~~~l~ag-~-D~tvrvWdl-~tg~~~~~~~~~~~~~~~~d~~~~--~~~~s~~G~~~V~~la~s~dg~~LaSGS~DgtI 215 (1115)
.++.++++ . ++.|.-.|. ++|..+... ... ...... ++..... .+ +++ ++..|+.++.|+.+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~-----~~~-~~~~~~~~~~~~~~~-~~----~~~--~~~~v~v~~~dg~l 127 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQH-----KPK-QDASTKAVMCCDVVD-RG----LAY--GAGQIVKKQANGHL 127 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEE-----CCC-CCGGGGGGCTTCSCC-CC----CEE--ETTEEEEECTTSEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEE-----cCC-CCccccccccccccc-cc----cEE--ECCEEEEEeCCCEE
Confidence 47777774 4 678999999 888876531 000 000000 0000001 11 122 35688889999999
Q ss_pred EEEECCCCCCCCCCCCcceEEee--cCCC--CEEEEEEeCCCcEEEEeC------CCcEEEEeCCCcceeecc
Q 001245 216 MCWKMNARLLDSDDGFGEVLSWQ--AHRG--PVLSLCISSYGDLWSGSE------GGGIKIWPWEAIEKALSL 278 (1115)
Q Consensus 216 rlWdl~~~~~~~~~~~~~~~~l~--GH~~--~V~sVafSpdG~L~SgS~------DgtIrvWdl~t~~~~l~~ 278 (1115)
..+|..+|+ .+.+.. +|.. .+.+--.-.++.++.++. |+.|..+|.++++...++
T Consensus 128 ~alD~~tG~--------~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 128 LALDAKTGK--------INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEETTTCC--------EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEECCCCC--------EEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 999998743 232221 2110 122111112566665554 799999999998776443
No 275
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.28 E-value=0.00018 Score=78.18 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=20.4
Q ss_pred cceEEEEEEEe---cEEEEEEeecccccc
Q 001245 677 KGAVGLRVRVY---DRIMCFVNCHFAAHL 702 (1115)
Q Consensus 677 KGaV~ir~~i~---~t~l~FVn~HLaA~~ 702 (1115)
.....+.|... +..|.+||+||.+..
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~ 139 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSD 139 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGG
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCC
Confidence 56677778765 569999999999654
No 276
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.16 E-value=0.021 Score=62.16 Aligned_cols=173 Identities=15% Similarity=0.132 Sum_probs=103.8
Q ss_pred CCCEEEEEEeCCCcE-EEEeCCC--cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEE
Q 001245 241 RGPVLSLCISSYGDL-WSGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNL 317 (1115)
Q Consensus 241 ~~~V~sVafSpdG~L-~SgS~Dg--tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~l 317 (1115)
+.....|.|+ ++.| .|++.+| +|++.|+++++...++. +... .-..-+
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-----------------l~~~-----------~FgeGi 92 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-----------------LGKR-----------YFGEGI 92 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-----------------CCTT-----------CCEEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-----------------cCCc-----------cceeEE
Confidence 3446899999 6776 4777776 99999999986542211 1000 001112
Q ss_pred EEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccc
Q 001245 318 LSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRS 395 (1115)
Q Consensus 318 as~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~ 395 (1115)
+. .+.+||-+. ++.+.++|..|++.++++...+.- ++
T Consensus 93 t~--~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG----------------------------------~g----- 131 (262)
T 3nol_A 93 SD--WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG----------------------------------WG----- 131 (262)
T ss_dssp EE--ETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC----------------------------------CC-----
T ss_pred EE--eCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc----------------------------------eE-----
Confidence 22 245677665 578999999999999887421100 00
Q ss_pred cceEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcC-CCCeeEEeecC--CC---cEEEEE-e
Q 001245 396 RNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYL--PF---AVQCLC-T 467 (1115)
Q Consensus 396 ~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~-tG~~l~tl~gH--~~---~V~sla-~ 467 (1115)
+++|+ .|+....+++|.++|. +.+.++++.-. .. .++.+. .
T Consensus 132 -------------------------------lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 132 -------------------------------LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp -------------------------------EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred -------------------------------EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 11222 3554445678999999 78888876542 22 244455 4
Q ss_pred cCCEEEeee-cccEEEEEeCC-Cccccccccc------------cCCEEEEEec--CCEEEeec
Q 001245 468 FGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------SSPVIKMAVG--AGYIFTLA 515 (1115)
Q Consensus 468 dG~~LaSGs-~DGtIrlWD~~-G~ll~~l~gH------------~~~V~sva~d--g~~laSgS 515 (1115)
+| .|+++. .+.+|.+.|.+ |+.+..+.-. .+..+.||+| ++.++..+
T Consensus 181 ~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 181 DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 56 455555 68899999986 7765544321 1245678864 45555443
No 277
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.16 E-value=0.049 Score=66.52 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=36.0
Q ss_pred cccEEEEEeCC-CccccccccccCCEE-E-EEecCCEEEeecCCCceEEeeecCC
Q 001245 477 MNGIVQVLDLE-GNLLGGWVAHSSPVI-K-MAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 477 ~DGtIrlWD~~-G~ll~~l~gH~~~V~-s-va~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.+|.|..||+. |+.+-...- ..+++ . ++..|..++.++.|+.++.+|..+.
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 45899999986 776544421 11222 2 4567888888999999999998774
No 278
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.07 E-value=0.064 Score=58.67 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=115.0
Q ss_pred CEEEEEEeCCCcEE-EEeC--CCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE
Q 001245 243 PVLSLCISSYGDLW-SGSE--GGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (1115)
Q Consensus 243 ~V~sVafSpdG~L~-SgS~--DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las 319 (1115)
....|+|++||.|+ |.+. +++|++.|+++++....+. +..+ .....++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-----------~fgeGi~~ 73 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-----------YFGEGLTL 73 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-----------CCEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-----------cceEEEEE
Confidence 46899999998875 4443 6899999999976542211 1111 01112233
Q ss_pred eCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccc
Q 001245 320 DHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (1115)
Q Consensus 320 ~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~ 397 (1115)
. +.+||.+. ++.+.++|..|++.+.++... .. .
T Consensus 74 ~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~---------------------------------------~--- 108 (266)
T 2iwa_A 74 L--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK---------------------------------------D--- 108 (266)
T ss_dssp E--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS---------------------------------------S---
T ss_pred e--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC---------------------------------------C---
Confidence 3 34666554 578999999999988776321 00 0
Q ss_pred eEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcC-CCCeeEEeecCC--C---cEEEEE-ecC
Q 001245 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQYLP--F---AVQCLC-TFG 469 (1115)
Q Consensus 398 ~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~-tG~~l~tl~gH~--~---~V~sla-~dG 469 (1115)
...+++|| +++.+..+++|.++|. +.+.+.++.-.. . .++.+. .+|
T Consensus 109 --------------------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 109 --------------------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp --------------------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred --------------------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 00122333 3655556789999999 678777766321 1 255666 355
Q ss_pred CEEEeee-cccEEEEEeCC-Cccccccccc-----------c--CCEEEEEe--cCC-EEEeecCCCceEEeeecC
Q 001245 470 SQIWVGY-MNGIVQVLDLE-GNLLGGWVAH-----------S--SPVIKMAV--GAG-YIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 470 ~~LaSGs-~DGtIrlWD~~-G~ll~~l~gH-----------~--~~V~sva~--dg~-~laSgS~DgtIRlWdl~~ 527 (1115)
+|++.. .+++|.+-|.+ |+.+..+.-. . .....|++ +++ .++|+....++..=++..
T Consensus 163 -~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 163 -EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp -EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred -EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 566555 57899999986 7776665421 1 24567886 455 556777788888878764
No 279
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.04 E-value=0.00063 Score=64.27 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=52.1
Q ss_pred CCceeeccCcEEec-----cceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeC
Q 001245 932 IPETIVSTNNIIIQ-----NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIK 1006 (1115)
Q Consensus 932 ~p~~~~~~~~i~~~-----~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~ 1006 (1115)
-|++.++...|+|+ ...++.++|+|+|.+ ++.|++.... ..|..++.++|..|.|.
T Consensus 7 ~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~-p~~~~~~~~~------------------~~~~~~f~v~p~~g~i~ 67 (112)
T 2e6j_A 7 GPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSI-DALFNMTPPT------------------SALGACFVFSPKEGIIE 67 (112)
T ss_dssp CCSEEESCSEEEEEEEESSCCEEEEEEEEECCSS-CEEEEECCCS------------------SHHHHHCEEESSEEEEC
T ss_pred CCEEEECcccEecEeEEECCEEEEEEEEEECCcc-eEEEEEecCC------------------ccccCcEEEECCcCEEC
Confidence 36666666666665 456788999999998 9999996310 01224699999999999
Q ss_pred CCCeeEEEEEEe
Q 001245 1007 PDRTAEMSVHHE 1018 (1115)
Q Consensus 1007 p~~~~~i~~~~~ 1018 (1115)
||++.+|+++..
T Consensus 68 pg~~~~i~V~f~ 79 (112)
T 2e6j_A 68 PSGVQAIQISFS 79 (112)
T ss_dssp TTBCCEEEEEEC
T ss_pred CCCEEEEEEEEE
Confidence 999999999964
No 280
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.96 E-value=0.03 Score=61.17 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=104.4
Q ss_pred CCCEEEEEEeCCCcE-EEEeCCCcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEE
Q 001245 241 RGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLS 319 (1115)
Q Consensus 241 ~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las 319 (1115)
+.....|.|+. +.| .|.+.+|.|++.|+++++....+ +.... -..-++.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~------------------l~~~~-----------FgeGit~ 103 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME------------------RLGNI-----------FAEGLAS 103 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE------------------ECTTC-----------CEEEEEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE------------------CCCCc-----------ceeEEEE
Confidence 45578999984 566 58889999999999997654211 10000 0011222
Q ss_pred eCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeeeeccccc
Q 001245 320 DHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGFFQRSRN 397 (1115)
Q Consensus 320 ~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~~~ 397 (1115)
.+.+||-+. ++.+.++|..|++.++++...+.- ++
T Consensus 104 --~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG----------------------------------wG------- 140 (268)
T 3nok_A 104 --DGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG----------------------------------WG------- 140 (268)
T ss_dssp --CSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC----------------------------------CC-------
T ss_pred --eCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce----------------------------------eE-------
Confidence 345666555 578999999999999887421100 00
Q ss_pred eEEeccCcEEEEecccccccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcC-CCCeeEEeec--CCC---cEEEEE-ecC
Q 001245 398 AIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDG-MIWTGGANGLLLQWDP-NGNRLQDFQY--LPF---AVQCLC-TFG 469 (1115)
Q Consensus 398 ~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~-tG~~l~tl~g--H~~---~V~sla-~dG 469 (1115)
+ ++|+ .|+.+..+++|.++|. +.+.++++.- +.. .++.|. .+|
T Consensus 141 ---------------------------L--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG 191 (268)
T 3nok_A 141 ---------------------------L--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG 191 (268)
T ss_dssp ---------------------------E--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred ---------------------------E--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC
Confidence 1 1222 3555556889999999 7888887764 222 345555 466
Q ss_pred CEEEeee-cccEEEEEeCC-Cccccccccc------------c-CCEEEEEec--CC-EEEee
Q 001245 470 SQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------S-SPVIKMAVG--AG-YIFTL 514 (1115)
Q Consensus 470 ~~LaSGs-~DGtIrlWD~~-G~ll~~l~gH------------~-~~V~sva~d--g~-~laSg 514 (1115)
.|+++. .+.+|.+-|.+ |+.+..+.-. . +..+.||.+ ++ +++||
T Consensus 192 -~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 192 -VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 466555 67899999986 7765544321 1 355678875 34 45554
No 281
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.93 E-value=0.083 Score=58.37 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=65.1
Q ss_pred ceEEEEEcCCCc-EEEE-eCCCeEEEEcCCCC---eeEEeecCCCcEEEEE--ecCCEEEeeec----------ccEEEE
Q 001245 421 RTEALTTSIDGM-IWTG-GANGLLLQWDPNGN---RLQDFQYLPFAVQCLC--TFGSQIWVGYM----------NGIVQV 483 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSG-S~DgtIklWD~tG~---~l~tl~gH~~~V~sla--~dG~~LaSGs~----------DGtIrl 483 (1115)
..+.|++++||. |+.+ +.++.|..+|+++. ....+....+ ...|+ ++|.+.++... .+.|..
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~ 264 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIK 264 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEE
Confidence 455689999986 6544 55689999998542 1222221122 45566 56764444333 478999
Q ss_pred EeCCCcccccccccc----CCEEEEEe-cCCEEEeecCCCceEEeeec
Q 001245 484 LDLEGNLLGGWVAHS----SPVIKMAV-GAGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 484 WD~~G~ll~~l~gH~----~~V~sva~-dg~~laSgS~DgtIRlWdl~ 526 (1115)
+|.+|+.+..+.... ..+.+++. +|+..++....+.|..+++.
T Consensus 265 ~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 265 FDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred ECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 998888777665432 34566665 45555555677888888864
No 282
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.93 E-value=0.0035 Score=60.36 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=64.3
Q ss_pred eeccCcEEeccceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEEEE
Q 001245 936 IVSTNNIIIQNQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEMSV 1015 (1115)
Q Consensus 936 ~~~~~~i~~~~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i~~ 1015 (1115)
.++.+....+...++.+.|+|+|.. ++.|++.. +.=..|+|..|.|.||++++|++
T Consensus 31 ~l~fg~~~v~~~~~~~~~l~N~g~~-~~~f~~~~-----------------------~~~F~i~P~~g~L~pg~~~~i~V 86 (122)
T 2ys4_A 31 KLNFSTCPVKYSTQKILLVRNIGNK-NAVFHIKT-----------------------CRPFSIEPAIGTLNVGESMQLEV 86 (122)
T ss_dssp EECCCSEESSSCEEEEEEEECCSSS-CEEEEEEC-----------------------CTTEEEESSEEEECTTCEEEEEE
T ss_pred eeecCCeecCCeEEEEEEEEECCCC-CEEEEEec-----------------------CCCeEEECCcCEECCCCEEEEEE
Confidence 4666666777788899999999997 99999763 12358999999999999999999
Q ss_pred EEeeccchHhHhcCCCCCCcccCcCcceeEEEEEEEecccccceeeEEEee
Q 001245 1016 HHEDFQTLEEFVDGVPQNWWCEDTRDQEVVLVLKVRGRYSTETRNHRIRVR 1066 (1115)
Q Consensus 1016 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Lvl~v~~~~~~~~~~h~i~v~ 1066 (1115)
+..-.. ...-+..|++++.+| .++.|++.
T Consensus 87 ~F~P~~-----------------~g~~~~~l~v~~~~g-----~~~~v~L~ 115 (122)
T 2ys4_A 87 EFEPQS-----------------VGDHSGRLIVCYDTG-----EKVFVSLY 115 (122)
T ss_dssp EECCSS-----------------SBCCCCBCEEEESSS-----CEECCEEC
T ss_pred EEEcCC-----------------CccEEEEEEEEECCC-----CEEEEEEE
Confidence 975321 222466778888777 56666665
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.87 E-value=0.11 Score=63.33 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=36.7
Q ss_pred cccEEEEEeCC-CccccccccccCCEE--EEEecCCEEEeecCCCceEEeeecCC
Q 001245 477 MNGIVQVLDLE-GNLLGGWVAHSSPVI--KMAVGAGYIFTLANHGGIRGWNVTSP 528 (1115)
Q Consensus 477 ~DGtIrlWD~~-G~ll~~l~gH~~~V~--sva~dg~~laSgS~DgtIRlWdl~~p 528 (1115)
.+|+|..||+. |+.+-+...+. ++. .+...|..++.++.|+.++.||..+.
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 36899999986 87765444332 222 24456788999999999999998764
No 284
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=96.84 E-value=0.00068 Score=73.15 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=27.3
Q ss_pred ceEEEEEEeCCCCCCchhhhccccCCCCCceeEEEEEeccc
Q 001245 553 KILAGTWNVGQGRASQDALISWLGSAASDVGIVVVGLQEVE 593 (1115)
Q Consensus 553 rI~v~TWNv~~~~~~~~~L~~wl~~~~~~~Di~viGlQEi~ 593 (1115)
.+-|.|||||+.+...+.|.+|+.. .+||| |+|||..
T Consensus 7 ~mki~s~Nvn~~r~~~~~l~~~l~~--~~~DI--l~LQEt~ 43 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRELPSIARD--LGLDI--VLVQEQY 43 (240)
T ss_dssp EEEEEEEECTTCHHHHHTHHHHHHH--HTCSE--EEEESCC
T ss_pred cceEEEEecCccHHHHHHHHHHHHH--cCCCE--EEeecce
Confidence 3679999999876655567888863 45665 6789973
No 285
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.13 Score=60.36 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred EEEEc--CCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEee--------cCCCCEEEEEEeCCCcEEEEeCC---
Q 001245 196 CMVGD--EASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQ--------AHRGPVLSLCISSYGDLWSGSEG--- 261 (1115)
Q Consensus 196 ~la~s--~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~--------GH~~~V~sVafSpdG~L~SgS~D--- 261 (1115)
|.+++ .+.+ ++++|-.+++|.+.|+.+.. ...+...+.+ |-+ .-..+..+|+|-++|+..+
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p----~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdGi~Vs~~g~~~g 160 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNP----REPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDAIYISALGNEEG 160 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCT----TSCEEEEEECHHHHHHHHCEE-EEEEEEECSSCEEEEEEEETTS
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCC----CCceeeeeechhhcccccCCC-cccceeECCCeEEEEcCCCcCC
Confidence 33445 5555 45667789999999997521 1122333332 111 2356788999932455444
Q ss_pred ---CcEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--------
Q 001245 262 ---GGIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-------- 330 (1115)
Q Consensus 262 ---gtIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-------- 330 (1115)
+.|-+.|.+|.+..-+..... .. . .-.-.+..++++..++++.
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~-----------------~~--~-------~~~Yd~~~~p~~~~mvsS~wg~p~~~~ 214 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDR-----------------GD--Q-------YLAYDFWWNLPNEVLVSSEWAVPNTIE 214 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBC-----------------TT--C-------CCCCCEEEETTTTEEEECBCCCHHHHT
T ss_pred CCCCeEEEEECCCCeEEEEEccCC-----------------CC--c-------cccceEEECCCCCEEEEccCcCccccc
Confidence 789999998876542221100 00 0 0000122345555555553
Q ss_pred ------------CCeEEEEEcCCccEEEEEec
Q 001245 331 ------------FLSFALWDARTRELLKVFNI 350 (1115)
Q Consensus 331 ------------d~tI~lWD~~tg~ll~tl~~ 350 (1115)
..+|.+||+.+++.++++..
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 47899999999999988865
No 286
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.70 E-value=0.15 Score=54.87 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=105.5
Q ss_pred cC--CCCEEEEEEeCCCcEE-EEeCCC--cEEEEeCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCC
Q 001245 239 AH--RGPVLSLCISSYGDLW-SGSEGG--GIKIWPWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSD 313 (1115)
Q Consensus 239 GH--~~~V~sVafSpdG~L~-SgS~Dg--tIrvWdl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~ 313 (1115)
-| ...+..|.|+. +.|+ |.+.+| .|++.|+++++...+.. +..+. -
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-----------------l~~~~-----------f 66 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-----------------VPPPY-----------F 66 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-----------------CCTTC-----------C
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-----------------CCCCc-----------c
Confidence 46 45688999987 5664 777654 99999999986542211 11010 0
Q ss_pred eEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccccccceEEEEecCCCCccceeeee
Q 001245 314 IKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQSSFGF 391 (1115)
Q Consensus 314 v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 391 (1115)
..-++. .+.+||-+. ++.+.++|..|.+.++++...+.- ++
T Consensus 67 geGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G----------------------------------wg- 109 (243)
T 3mbr_X 67 GAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG----------------------------------WA- 109 (243)
T ss_dssp EEEEEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC----------------------------------CE-
T ss_pred eeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc----------------------------------eE-
Confidence 011222 245666655 578999999999999887421100 00
Q ss_pred eccccceEEeccCcEEEEecccccccCCCceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCC-----CcEEEE
Q 001245 392 FQRSRNAIMGAADAVRRVAAKGGFGDDNRRTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLP-----FAVQCL 465 (1115)
Q Consensus 392 ~~~~~~~~~Gs~d~v~~~~~~g~l~~h~~~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~-----~~V~sl 465 (1115)
++ ..++.|+.+..+++|.++|. +.+.++++.-.. ..++.+
T Consensus 110 ---------------------------------lt-~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 110 ---------------------------------LT-SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp ---------------------------------EE-ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred ---------------------------------Ee-eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 11 11224655556788999999 788888776422 234556
Q ss_pred EecCCEEEeee-cccEEEEEeCC-Cccccccccc------------c-CCEEEEEec--CCEEEeec
Q 001245 466 CTFGSQIWVGY-MNGIVQVLDLE-GNLLGGWVAH------------S-SPVIKMAVG--AGYIFTLA 515 (1115)
Q Consensus 466 a~dG~~LaSGs-~DGtIrlWD~~-G~ll~~l~gH------------~-~~V~sva~d--g~~laSgS 515 (1115)
...+.+|++.. .+..|.+.|.+ |+.+..+.-. . +..+.||.| ++.++..+
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 64444466555 57799999986 7765543311 1 245678864 45554433
No 287
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.63 E-value=2.4 Score=52.71 Aligned_cols=317 Identities=15% Similarity=0.213 Sum_probs=158.9
Q ss_pred eEEEEEe-CCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCCC
Q 001245 135 LRTIVCT-EEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRDG 213 (1115)
Q Consensus 135 l~~l~~~-~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~Dg 213 (1115)
++.+..+ ++.||+|.++.+.++|..++..... . . ....+ .+.. ...|.++..|.+|. ||-|...|
T Consensus 234 i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~------~--~--~~~~~--~~l~-~~~i~~i~~D~~g~-lWiGT~~G 299 (758)
T 3ott_A 234 IKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHI------I--H--DSRNI--QSLT-NNIIWNIFADQEHN-IWLGTDYG 299 (758)
T ss_dssp EEEEEECTTCCEEEEETTEEEEECCTTSCCEEE------C--C--CTTCT--TSCS-CSCEEEEEECTTCC-EEEEESSS
T ss_pred EEEEEEcCCCCEEEEeCCceeEEecCCCcEEEE------E--c--CCCCc--CcCC-cCeEEEEEEcCCCC-EEEEeCCc
Confidence 3444444 7789988778888888766532210 0 0 00000 0122 45799999998765 78888777
Q ss_pred eEEEEECCCCCCCCCCCCcceEEee-----cCCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEEE
Q 001245 214 RIMCWKMNARLLDSDDGFGEVLSWQ-----AHRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAAL 288 (1115)
Q Consensus 214 tIrlWdl~~~~~~~~~~~~~~~~l~-----GH~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a~ 288 (1115)
+.+..... .+.. .... .....|.+|.-.++|.||-|..+| +-.++..++... . ..
T Consensus 300 -l~~~~~~~-------~~~~-~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~-~-------~~-- 359 (758)
T 3ott_A 300 -ISLSRYNS-------ALQF-IPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERH-D-------AI-- 359 (758)
T ss_dssp -EEEECCCC--------CEE-EEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCC-C-------CE--
T ss_pred -ccccccCC-------ceeE-EecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccc-e-------eE--
Confidence 44443221 0111 1110 113469999999999999888766 444554432110 0 00
Q ss_pred EeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCCccc
Q 001245 289 IVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPDFAM 368 (1115)
Q Consensus 289 ~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~~~~ 368 (1115)
... +.. .........|.+++.+.+ ..||.+.++.+..+|..+++..+........ ..+.....
T Consensus 360 -------~~~-~~~--~~~~l~~~~v~~i~~d~~-g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-- 422 (758)
T 3ott_A 360 -------WYR-MGD--KTYPLSHNRIRHIYEDKE-QQLWIATDGSINRYDYATRQFIHYNIVDNTG----TYNTNWTY-- 422 (758)
T ss_dssp -------EEC-TTC--SSSCCSCSCEEEEEECTT-SCEEEEETTEEEEEETTTTEEEEEEEECCC------CBSSSEE--
T ss_pred -------Eec-cCC--cCCCCCCCceEEEEECCC-CCEEEEeCCcHhhcCcCCCcEEEeecCCCcC----CCCCceEE--
Confidence 000 000 000012245777777665 4578777778999999888754322111100 00000000
Q ss_pred cccceEEEEecCCCCccceeeeeecc-ccceEEec-cCcEEEEeccc-------ccc---------c-CCCceEEEEEcC
Q 001245 369 EDEFKTKIVTSSKKDKAQSSFGFFQR-SRNAIMGA-ADAVRRVAAKG-------GFG---------D-DNRRTEALTTSI 429 (1115)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~f~~~-~~~~~~Gs-~d~v~~~~~~g-------~l~---------~-h~~~V~aVa~S~ 429 (1115)
.+..+ ...+-+|. .+++.+++... .+. + ....|.++....
T Consensus 423 ---------------------~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~ 481 (758)
T 3ott_A 423 ---------------------YIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN 481 (758)
T ss_dssp ---------------------EEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT
T ss_pred ---------------------EEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC
Confidence 00000 01111222 12343333210 010 0 123588888889
Q ss_pred CCcEEE-EeCCCeEEEEcCCCCeeEEeecC----CCcEEEEEec-CCEEEeeecccEEEEEeCCCccccccc--cc-cCC
Q 001245 430 DGMIWT-GGANGLLLQWDPNGNRLQDFQYL----PFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNLLGGWV--AH-SSP 500 (1115)
Q Consensus 430 Dg~laS-GS~DgtIklWD~tG~~l~tl~gH----~~~V~sla~d-G~~LaSGs~DGtIrlWD~~G~ll~~l~--gH-~~~ 500 (1115)
+|.||. ++..+-|..+|........+... ...|.++..| ...|+.|+..| +..+|........+. +- ...
T Consensus 482 ~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~gl~~~~ 560 (758)
T 3ott_A 482 EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPKDESQQSISFGSFSNNE 560 (758)
T ss_dssp TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC--CCCCBCCCCC---CC
T ss_pred CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecCCCceEEecccCCCccc
Confidence 999986 34444577789844334443211 2467888854 35677777766 777887633333221 11 245
Q ss_pred EEEEEecCCEEEeecCCCceEEeee
Q 001245 501 VIKMAVGAGYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 501 V~sva~dg~~laSgS~DgtIRlWdl 525 (1115)
|.++..+...|+-++..| +-.+|.
T Consensus 561 i~~i~~~~g~lWi~t~~G-l~~~~~ 584 (758)
T 3ott_A 561 ILSMTCVKNSIWVSTTNG-LWIIDR 584 (758)
T ss_dssp EEEEEEETTEEEEEESSC-EEEEET
T ss_pred eEEEEECCCCEEEECCCC-eEEEcC
Confidence 777765545566555554 555553
No 288
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.57 E-value=0.16 Score=55.24 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=66.0
Q ss_pred EEEEcCCCCEEEEEeCCC--eEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCC-cEEEEe-CCCcEEEEeCCC
Q 001245 196 CMVGDEASGVVWSGHRDG--RIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYG-DLWSGS-EGGGIKIWPWEA 271 (1115)
Q Consensus 196 ~la~s~dg~~LaSGS~Dg--tIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG-~L~SgS-~DgtIrvWdl~t 271 (1115)
-|.|+ ++.+..|.+.+| +|+..|+++++ ...++.-. .......++++| +|+... .++++.++|.++
T Consensus 47 GL~~~-~~~LyestG~~g~S~v~~vD~~Tgk--------v~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 47 GFFYR-NGYFYESTGLNGRSSIRKVDIESGK--------TLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEECTTTCC--------EEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred eEEEE-CCEEEEECCCCCCceEEEEECCCCc--------EEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 47788 678888888877 99999999753 23333211 223332233334 476444 588999999998
Q ss_pred cceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEE-eecCCeEEEEEcCCccEEEEE
Q 001245 272 IEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVW-SAGFLSFALWDARTRELLKVF 348 (1115)
Q Consensus 272 ~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~-S~sd~tI~lWD~~tg~ll~tl 348 (1115)
.+..-++ ...++ ...++. ++..|+ |.+...|.++|..|.+.++++
T Consensus 117 ~~~~~ti-----------------~~~~e-------------G~glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 117 LRQVRSF-----------------NYDGE-------------GWGLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp CCEEEEE-----------------ECSSC-------------CCCEEE--CSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred CcEEEEE-----------------ECCCC-------------ceEEec--CCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 7654221 11111 111222 234444 434567999999998887765
No 289
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.52 E-value=1.3 Score=48.40 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEe--CCC-cEEEEe
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS--EGG-GIKIWP 268 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS--~Dg-tIrvWd 268 (1115)
.....++++++|.++++-..+++|..||.+++ ....+. -.+.+.+|+++++|+|+-+. .++ .|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 34567999999998888888999999998751 122222 23468899999999975443 222 355556
Q ss_pred CCCcc
Q 001245 269 WEAIE 273 (1115)
Q Consensus 269 l~t~~ 273 (1115)
..+++
T Consensus 102 ~~~g~ 106 (306)
T 2p4o_A 102 KSDGT 106 (306)
T ss_dssp CTTSC
T ss_pred CCCCe
Confidence 55543
No 290
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.51 E-value=0.85 Score=55.34 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=56.2
Q ss_pred CCCeEEEEcC-CCCeeEEeecCCCcE-EEEEecCCEEEeeecccEEEEEeCC-CccccccccccCCEEE-E--EecCC-E
Q 001245 438 ANGLLLQWDP-NGNRLQDFQYLPFAV-QCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPVIK-M--AVGAG-Y 510 (1115)
Q Consensus 438 ~DgtIklWD~-tG~~l~tl~gH~~~V-~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V~s-v--a~dg~-~ 510 (1115)
.+|+|..||+ +|+.+=+...+.... ..+...|.+++.|+.||.++.||.+ |+.+-.++...+.+.+ + ..+|+ |
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 4789999999 898875554332111 1234568889999999999999986 9988777654432211 3 36776 5
Q ss_pred EEeec-CCCceEEe
Q 001245 511 IFTLA-NHGGIRGW 523 (1115)
Q Consensus 511 laSgS-~DgtIRlW 523 (1115)
++..+ ..+.+-+|
T Consensus 544 v~~~~G~gg~~~~~ 557 (582)
T 1flg_A 544 LGVTVGYGGAVPLW 557 (582)
T ss_dssp EEEEECCCSHHHHH
T ss_pred EEEEccCCCccccc
Confidence 55443 34545555
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.47 E-value=0.14 Score=62.85 Aligned_cols=71 Identities=7% Similarity=0.116 Sum_probs=47.7
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCcE-EEEe-C
Q 001245 196 CMVGDE-ASGVVWSGHRDG-----------RIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDL-WSGS-E 260 (1115)
Q Consensus 196 ~la~s~-dg~~LaSGS~Dg-----------tIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~L-~SgS-~ 260 (1115)
++++.+ +|++++.|+.+. .+.+||+.++.- ..+..+ ..|.....++++..+|+| +.|+ .
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w------~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV------SDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB------CCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE------EeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 455666 899999998654 688999887432 222233 223334456788899985 5676 4
Q ss_pred CCcEEEEeCCCc
Q 001245 261 GGGIKIWPWEAI 272 (1115)
Q Consensus 261 DgtIrvWdl~t~ 272 (1115)
+.++.+||..+.
T Consensus 264 ~~~v~~yd~~t~ 275 (656)
T 1k3i_A 264 AKKTSLYDSSSD 275 (656)
T ss_dssp TTCEEEEEGGGT
T ss_pred CCceEEecCcCC
Confidence 568999998764
No 292
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.46 E-value=1.3 Score=50.65 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=63.3
Q ss_pred eEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 001245 144 QLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNA 222 (1115)
Q Consensus 144 ~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~ 222 (1115)
.|+.+..+.|+..++.+..... + ..+...+..+++++ ++.+.|+-...+.|..|++++
T Consensus 89 ~l~~~~~~~I~~i~~~~~~~~~------------------~---~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g 147 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRSEYTL------------------L---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147 (386)
T ss_dssp EEEEECBSCEEEECTTSCCCEE------------------E---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eeEeecCccceeeccCCCcEEE------------------E---ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 3444666788888876543221 1 11234577899996 566777877889999999986
Q ss_pred CCCCCCCCCcceEEe-ecCCCCEEEEEEeCCC-cE-EEEeCCCcEEEEeCCC
Q 001245 223 RLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 223 ~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG-~L-~SgS~DgtIrvWdl~t 271 (1115)
+ ...++ .........|++.+.+ .| ++-+..+.|.+.++++
T Consensus 148 ~---------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 148 S---------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp C---------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred C---------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 2 12222 2223345789999754 56 5666778888888765
No 293
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.32 E-value=0.49 Score=57.73 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=51.0
Q ss_pred CCCeEEEEcC-CCCeeEEeecCCCcEE--EEEecCCEEEeeecccEEEEEeCC-CccccccccccCCE---EEEEecCC-
Q 001245 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSSPV---IKMAVGAG- 509 (1115)
Q Consensus 438 ~DgtIklWD~-tG~~l~tl~gH~~~V~--sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~~V---~sva~dg~- 509 (1115)
.+|.|..||+ +|+.+=+.... .++. .++..|.+++.|+.||.++.+|.+ |+++-+++-..+.+ .....+|+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence 4588999999 89877655422 1121 244678889999999999999986 98887665433221 11236775
Q ss_pred EEEeec
Q 001245 510 YIFTLA 515 (1115)
Q Consensus 510 ~laSgS 515 (1115)
|+++.+
T Consensus 530 yv~~~~ 535 (599)
T 1w6s_A 530 YVAIYY 535 (599)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 555543
No 294
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.31 E-value=0.49 Score=57.32 Aligned_cols=80 Identities=24% Similarity=0.320 Sum_probs=52.5
Q ss_pred CCCeEEEEcC-CCCeeEEeecCCCcEE--EEEecCCEEEeeecccEEEEEeCC-CccccccccccC----CEEEEEecCC
Q 001245 438 ANGLLLQWDP-NGNRLQDFQYLPFAVQ--CLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVAHSS----PVIKMAVGAG 509 (1115)
Q Consensus 438 ~DgtIklWD~-tG~~l~tl~gH~~~V~--sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~gH~~----~V~sva~dg~ 509 (1115)
.++.|..||. +|+.+-++.... .+. .+...|.+++.|+.||.|+.||.+ |+++.++.-... ++. ...+|+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~-~~~~G~ 519 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMT-YSFKGK 519 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE-EEETTE
T ss_pred CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEE-EEECCE
Confidence 4689999999 898877765432 222 233567888899999999999986 888776653322 222 235776
Q ss_pred -EEEeecCCCc
Q 001245 510 -YIFTLANHGG 519 (1115)
Q Consensus 510 -~laSgS~Dgt 519 (1115)
++++.+..+.
T Consensus 520 ~yv~~~~G~~g 530 (571)
T 2ad6_A 520 QYIGSMYGVGG 530 (571)
T ss_dssp EEEEEEECCCT
T ss_pred EEEEEECCCCC
Confidence 4444444444
No 295
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.21 E-value=0.17 Score=55.20 Aligned_cols=161 Identities=11% Similarity=0.093 Sum_probs=98.3
Q ss_pred cceeeEEEEEeCCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEE
Q 001245 131 IGCFLRTIVCTEEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWS 208 (1115)
Q Consensus 131 ~~~~l~~l~~~~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaS 208 (1115)
-.+|-+-|..++++||. |.++.|++.|+++++..+. . ....+|.+ .++++. +++...
T Consensus 53 ~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~-----~------l~~~~Fge---------Git~~g-~~Ly~l 111 (268)
T 3nok_A 53 TNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWM-----E------RLGNIFAE---------GLASDG-ERLYQL 111 (268)
T ss_dssp TTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEE-----E------ECTTCCEE---------EEEECS-SCEEEE
T ss_pred CccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeE-----E------CCCCccee---------EEEEeC-CEEEEE
Confidence 34577788888999998 4677899999999987763 0 11112222 144443 466666
Q ss_pred EeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 209 GHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 209 GS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
...++.+.++|.++. +.+.++.--.. ...+++||+ |+.+..+++|.++|.++.+..-++
T Consensus 112 tw~~~~v~V~D~~Tl--------~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I--------- 171 (268)
T 3nok_A 112 TWTEGLLFTWSGMPP--------QRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAV--------- 171 (268)
T ss_dssp ESSSCEEEEEETTTT--------EEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEE---------
T ss_pred EccCCEEEEEECCcC--------cEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEE---------
Confidence 678999999999872 44555542111 234446676 765556889999999886543111
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec--CCeEEEEEcCCccEEEEEe
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG--FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s--d~tI~lWD~~tg~ll~tl~ 349 (1115)
....+. . +-..+.-|... ++ +||... ...|.+-|.+||+.+.++.
T Consensus 172 --------~V~~~g----~---~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 172 --------QVKLRG----Q---PVELINELECA-NG-VIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp --------ECEETT----E---ECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred --------EeCCCC----c---ccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 110000 0 00122233333 33 566543 4689999999999988874
No 296
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.20 E-value=0.053 Score=59.33 Aligned_cols=106 Identities=8% Similarity=0.027 Sum_probs=77.6
Q ss_pred eEEEEEcCCCcEEEEeC---CCeEEEEcC-CCCeeEEeecCCC-cEEEEEecCCEEEeee-cccEEEEEeCC-Ccccccc
Q 001245 422 TEALTTSIDGMIWTGGA---NGLLLQWDP-NGNRLQDFQYLPF-AVQCLCTFGSQIWVGY-MNGIVQVLDLE-GNLLGGW 494 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~---DgtIklWD~-tG~~l~tl~gH~~-~V~sla~dG~~LaSGs-~DGtIrlWD~~-G~ll~~l 494 (1115)
...+++++|+.|+.++. +++|.+.|+ +|+.++++.-... ..-.++.+|++|+.+. .+++|.++|.+ ++.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 46788999888765543 579999999 8999988753222 2345777888888776 57899999986 7777777
Q ss_pred ccccCCEEEEEecCCEEEeecCCCceEEeeecC
Q 001245 495 VAHSSPVIKMAVGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 495 ~gH~~~V~sva~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
..-...=+.++.||+.++.+..+++|.+.|..+
T Consensus 103 ~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t 135 (266)
T 2iwa_A 103 THQMKDGWGLATDGKILYGSDGTSILYEIDPHT 135 (266)
T ss_dssp ECCSSSCCEEEECSSSEEEECSSSEEEEECTTT
T ss_pred ECCCCCeEEEEECCCEEEEECCCCeEEEEECCC
Confidence 422122255888998877666788899988655
No 297
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.14 E-value=2.7 Score=48.21 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC-CCcE-EEEeCCCcEEEE
Q 001245 191 VSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS-YGDL-WSGSEGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp-dG~L-~SgS~DgtIrvW 267 (1115)
...+..|+|++. +.+.|+-...+.|+.+++++... .................|++.+ .+.| ++-+..+.|.+-
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~----~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC----CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 346778999974 66777777889999999875210 0011122222345678999998 4556 576777899988
Q ss_pred eCCCc
Q 001245 268 PWEAI 272 (1115)
Q Consensus 268 dl~t~ 272 (1115)
++++.
T Consensus 187 ~~~g~ 191 (400)
T 3p5b_L 187 DTKGV 191 (400)
T ss_dssp CTTTC
T ss_pred eCCCC
Confidence 88753
No 298
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.13 E-value=0.26 Score=59.54 Aligned_cols=70 Identities=7% Similarity=-0.011 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCcEE-EEeCCCeEEEEcC-C----------CCeeEEeecCCCcE-EEE------EecCCEEEeeec---
Q 001245 420 RRTEALTTSIDGMIW-TGGANGLLLQWDP-N----------GNRLQDFQYLPFAV-QCL------CTFGSQIWVGYM--- 477 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~la-SGS~DgtIklWD~-t----------G~~l~tl~gH~~~V-~sl------a~dG~~LaSGs~--- 477 (1115)
.....++|++||.++ +--.|++|-.||+ + .+.++++..|-.+- .+. .+||++|+++..
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 356678999999754 5556999999998 5 46788888775542 121 279999999863
Q ss_pred ccE----------EEEEeCCCc
Q 001245 478 NGI----------VQVLDLEGN 489 (1115)
Q Consensus 478 DGt----------IrlWD~~G~ 489 (1115)
|+. -+|.|++|.
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSS
T ss_pred cccccCCCCCCCcceEEEcCCC
Confidence 442 288898753
No 299
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.12 E-value=2.2 Score=47.05 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=62.3
Q ss_pred EEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 001245 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNAR 223 (1115)
Q Consensus 145 l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~ 223 (1115)
|+.+..+.|+.-|+++..... . +.+...+..+++++. +.+.|+-..++.|..+++++.
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~------------------~---~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~ 62 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTS------------------L---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEE------------------E---ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred EEEECCCeEEEEECCCcceEe------------------h---hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCC
Confidence 444666789999987654221 1 111335678999985 567777778899999998751
Q ss_pred CCCCCCCCcceEEeecCCCCEEEEEEeCC-CcE-EEEeCCCcEEEEeCCC
Q 001245 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 224 ~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~L-~SgS~DgtIrvWdl~t 271 (1115)
.. .. .....+...-.....|++.+. +.| ++-+..++|.+.++++
T Consensus 63 ~~--~~--~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 63 HG--VS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CC--Cc--ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 00 00 111122222345589999974 456 5667788999999865
No 300
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.03 E-value=2.5 Score=46.91 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=65.2
Q ss_pred EEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCC
Q 001245 145 LWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNAR 223 (1115)
Q Consensus 145 l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~ 223 (1115)
|+.+..+.|+..|+++...... .+ +.+...+.+|+|++. +.+.|+-...+.|..++++++
T Consensus 7 ll~~~~~~I~~i~l~~~~~~~~---------------~~----~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~ 67 (318)
T 3sov_A 7 LLYANRRDLRLVDATNGKENAT---------------IV----VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT 67 (318)
T ss_dssp EEEECEEEEEEEETTCTTSCCE---------------EE----EEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS
T ss_pred EEEEccCeEEEEECCCCceEEE---------------EE----ecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCC
Confidence 4446667899999875531110 01 111234668999974 777888888899999999863
Q ss_pred CCCCCCCCcceEEeecCCCCEEEEEEeCC-CcE-EEEeCCCcEEEEeCCCc
Q 001245 224 LLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 224 ~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~L-~SgS~DgtIrvWdl~t~ 272 (1115)
.. . ...+..--.....|++.+. |.| ++-+..+.|.+.++++.
T Consensus 68 ~~------~-~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 68 ES------V-QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp SC------C-CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred Cc------e-EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 10 1 1122222345678999974 456 57677789999998753
No 301
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.98 E-value=4.9 Score=49.79 Aligned_cols=332 Identities=16% Similarity=0.219 Sum_probs=169.3
Q ss_pred eeEEEE-EeCCeEEEeCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEEeCC
Q 001245 134 FLRTIV-CTEEQLWAGGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSGHRD 212 (1115)
Q Consensus 134 ~l~~l~-~~~~~l~ag~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSGS~D 212 (1115)
.+..+. ..++.||.|.++.+..+|..+..... +.. .. ...|.++..+ + +.||-|..+
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~-----------------~~~--~~-~~~i~~i~~~-~-g~lWigt~~ 121 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQ-----------------PET--DF-PTDVRTMALQ-G-DTLWLGALN 121 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTTTEECC-----------------CSC--CC-CSCEEEEEEE-T-TEEEEEETT
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEEC-----------------ccc--CC-CceEEEEEec-C-CcEEEEcCC
Confidence 345544 44789999888889999987653211 000 01 2346666543 3 468888877
Q ss_pred CeEEEEECCCCCCCCCCCCcceEEee----c-CCCCEEEEEEeCCCcEEEEeCCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 213 GRIMCWKMNARLLDSDDGFGEVLSWQ----A-HRGPVLSLCISSYGDLWSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 213 gtIrlWdl~~~~~~~~~~~~~~~~l~----G-H~~~V~sVafSpdG~L~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
-+..+|..++ ....+. + ....|.+|+..++|.||-|..+| +..++..+..... +
T Consensus 122 -Gl~~~~~~~~---------~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~-~--------- 180 (758)
T 3ott_A 122 -GLYTYQLQSR---------KLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEG-I--------- 180 (758)
T ss_dssp -EEEEEETTTC---------CEEEECHHHHCCSCSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEE-E---------
T ss_pred -cceeEeCCCC---------eEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEE-e---------
Confidence 4667887652 122221 1 13569999999899988777655 6667775532110 0
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeecCCeEEEEEcCCccEEEEEecCCceeeEEeccCCCC-c
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAGFLSFALWDARTRELLKVFNIDGQIENRVDMSLLPD-F 366 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~sd~tI~lWD~~tg~ll~tl~~~~~~~~~v~~s~~~~-~ 366 (1115)
.+.... ......+.+++.+..+..||-+.++.+..+|..+++...........+.++....... .
T Consensus 181 --------~~~~~~------~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 246 (758)
T 3ott_A 181 --------PLPVHS------SQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL 246 (758)
T ss_dssp --------CCCCCT------TCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE
T ss_pred --------cCCCcc------ccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE
Confidence 000000 0011346677777766777877666788888887764322111111111111111100 0
Q ss_pred cccccceEEEEecCCC-------------Ccccee-eeeecc-ccceEEeccCcEEEEecccccc----------cCCCc
Q 001245 367 AMEDEFKTKIVTSSKK-------------DKAQSS-FGFFQR-SRNAIMGAADAVRRVAAKGGFG----------DDNRR 421 (1115)
Q Consensus 367 ~~~~~~~~~~~~~~~~-------------~~~~~~-v~f~~~-~~~~~~Gs~d~v~~~~~~g~l~----------~h~~~ 421 (1115)
..... .+..+..... ...... ..+..+ ...+=+|...++........+. .....
T Consensus 247 igT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (758)
T 3ott_A 247 AGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYGISLSRYNSALQFIPISQITGTGDGNQ 325 (758)
T ss_dssp EEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSSEEEECCCC-CEEEEHHHHSCSCCCCB
T ss_pred EEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCcccccccCCceeEEecccCCCCCCCce
Confidence 00000 0111110000 000000 112222 1223334434443322111110 11245
Q ss_pred eEEEEEcCCCcEEEEeCCCeEEEEcC-CCC--eeEEeec-------CCCcEEEEEec-CCEEEeeecccEEEEEeCCCcc
Q 001245 422 TEALTTSIDGMIWTGGANGLLLQWDP-NGN--RLQDFQY-------LPFAVQCLCTF-GSQIWVGYMNGIVQVLDLEGNL 490 (1115)
Q Consensus 422 V~aVa~S~Dg~laSGS~DgtIklWD~-tG~--~l~tl~g-------H~~~V~sla~d-G~~LaSGs~DGtIrlWD~~G~l 490 (1115)
|.++....+|.||.|+.+| +-.++. +++ ....+.. ....|.+|..| ...|+.|+.. -+..+|.+...
T Consensus 326 v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~-GL~~~~~~~~~ 403 (758)
T 3ott_A 326 FYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATDG-SINRYDYATRQ 403 (758)
T ss_dssp EEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEETT-EEEEEETTTTE
T ss_pred EEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeCC-cHhhcCcCCCc
Confidence 8888888899999998766 555665 442 1222221 12468999865 3467888854 58889976332
Q ss_pred ccccc--c-----ccCCEEEEEecC-CEEEeecCCCceEEeee
Q 001245 491 LGGWV--A-----HSSPVIKMAVGA-GYIFTLANHGGIRGWNV 525 (1115)
Q Consensus 491 l~~l~--g-----H~~~V~sva~dg-~~laSgS~DgtIRlWdl 525 (1115)
...+. . ....|.++..|. ..|+-|+..+.+..+|.
T Consensus 404 ~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~ 446 (758)
T 3ott_A 404 FIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDK 446 (758)
T ss_dssp EEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEH
T ss_pred EEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEcc
Confidence 22221 0 234688888653 46777777677777774
No 302
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.85 E-value=0.043 Score=59.63 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=25.6
Q ss_pred CcceEEEEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHh
Q 001245 676 NKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRT 718 (1115)
Q Consensus 676 NKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~ 718 (1115)
..|+++|+ +.+ +.|++.||.+... .+|.+....|...
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~ 157 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGG--SDAVSLIRNIFTT 157 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTT--TTHHHHHHHHHHH
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCC--chHHHHHHHHHHH
Confidence 77888885 777 9999999998752 2244445555553
No 303
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.76 E-value=3.5 Score=46.30 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=50.2
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCC-CcE-EEEeCCCcEEEE
Q 001245 192 SSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSY-GDL-WSGSEGGGIKIW 267 (1115)
Q Consensus 192 ~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpd-G~L-~SgS~DgtIrvW 267 (1115)
..+..+++++ ++.+.|+-...+.|..++++++. ...+ .........|++.+. |.| ++-+..+.|.+.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~ 143 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 143 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC---------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEE
Confidence 4577899996 46677787788999999998621 1222 222334578999975 456 577778899999
Q ss_pred eCCCc
Q 001245 268 PWEAI 272 (1115)
Q Consensus 268 dl~t~ 272 (1115)
++++.
T Consensus 144 ~~dG~ 148 (349)
T 3v64_C 144 NLDGA 148 (349)
T ss_dssp ETTSC
T ss_pred cCCCC
Confidence 98753
No 304
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=95.39 E-value=0.18 Score=48.69 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=49.8
Q ss_pred eeeccC-cEEecc----ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCC
Q 001245 935 TIVSTN-NIIIQN----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1009 (1115)
Q Consensus 935 ~~~~~~-~i~~~~----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~ 1009 (1115)
+.+++. .|.|.- +.+..|+|+|++.. ...|.+-+. .|.-+.|.|..|+|.||+
T Consensus 9 l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~-~vaFKVKTT---------------------~p~~y~VrP~~Gii~P~~ 66 (126)
T 1msp_A 9 INTQPSQKIVFNAPYDDKHTYHIKITNAGGR-RIGWAIKTT---------------------NMRRLSVDPPCGVLDPKE 66 (126)
T ss_dssp EEEESSSCEEEESCCSSCCCEEEEEEECSSS-CEEEEEEES---------------------CTTTEEEESCEEEECTTC
T ss_pred EEEcCCCeEEEcCcCCcceEEEEEEECCCCC-eEEEEEEcC---------------------CCCcEEEECCCeEECCCC
Confidence 566665 777743 45678999999986 788998641 256789999999999999
Q ss_pred eeEEEEEEee
Q 001245 1010 TAEMSVHHED 1019 (1115)
Q Consensus 1010 ~~~i~~~~~~ 1019 (1115)
+++|.|.+..
T Consensus 67 s~~v~V~~q~ 76 (126)
T 1msp_A 67 KVLMAVSCDT 76 (126)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEecC
Confidence 9999998644
No 305
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.32 E-value=0.84 Score=49.07 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=62.1
Q ss_pred eCCCeEEEEcC-CCCeeEEeecCCCcEEEEEecCCEEEeeecccEEEEEeCC-Ccccccccc--cc---CCEEEEEecCC
Q 001245 437 GANGLLLQWDP-NGNRLQDFQYLPFAVQCLCTFGSQIWVGYMNGIVQVLDLE-GNLLGGWVA--HS---SPVIKMAVGAG 509 (1115)
Q Consensus 437 S~DgtIklWD~-tG~~l~tl~gH~~~V~sla~dG~~LaSGs~DGtIrlWD~~-G~ll~~l~g--H~---~~V~sva~dg~ 509 (1115)
-.++.+.++|. +++.+.++...... +.|++||++|+.+..+++|.++|.+ .+.++++.- +. ..++-+...+.
T Consensus 82 w~~~~v~v~D~~tl~~~~ti~~~~~G-wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G 160 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRARFRYPGEG-WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNG 160 (243)
T ss_dssp SSSSEEEEEETTTTEEEEEEECSSCC-CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred eeCCEEEEEECCcCcEEEEEeCCCCc-eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCC
Confidence 45789999999 89999998754333 5778899989888889999999986 565555442 21 23445554333
Q ss_pred EEEee-cCCCceEEeeecC
Q 001245 510 YIFTL-ANHGGIRGWNVTS 527 (1115)
Q Consensus 510 ~laSg-S~DgtIRlWdl~~ 527 (1115)
.|+.. -.+..|.+-|..+
T Consensus 161 ~lyanvw~s~~I~vIDp~t 179 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPAS 179 (243)
T ss_dssp EEEEEETTTTEEEEECTTT
T ss_pred EEEEEECCCCeEEEEECCC
Confidence 45444 3466787777655
No 306
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.28 E-value=4.6 Score=44.65 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred CCceEEEEEcCCCcEEEEeCCCeEEEEcCC-CCeeEEee----cCCCcEEEEEe--cCCEEEeeecccEEEEEeCC-Ccc
Q 001245 419 NRRTEALTTSIDGMIWTGGANGLLLQWDPN-GNRLQDFQ----YLPFAVQCLCT--FGSQIWVGYMNGIVQVLDLE-GNL 490 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~laSGS~DgtIklWD~t-G~~l~tl~----gH~~~V~sla~--dG~~LaSGs~DGtIrlWD~~-G~l 490 (1115)
...+..+++++++.++.++.+|.+.+++.+ |+--+.+. .+...+.+|+. ++..+++| .+|.| .+..+ |+.
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~t 281 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQT 281 (327)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSS
T ss_pred CCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcc
Confidence 346778889999998888889999888543 43222222 12345788873 45655555 46766 34444 432
Q ss_pred ---ccccccccCCEEEEEe-cCCEEEeecCCCceEEee
Q 001245 491 ---LGGWVAHSSPVIKMAV-GAGYIFTLANHGGIRGWN 524 (1115)
Q Consensus 491 ---l~~l~gH~~~V~sva~-dg~~laSgS~DgtIRlWd 524 (1115)
+.....+...+.+|.+ ++..++.++.+|+|.-++
T Consensus 282 W~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 282 WQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp CEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred cEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 2222223455677775 566788888899877665
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.28 E-value=7.1 Score=49.07 Aligned_cols=78 Identities=10% Similarity=0.107 Sum_probs=51.3
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEE
Q 001245 191 VSSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIW 267 (1115)
Q Consensus 191 ~~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvW 267 (1115)
...+..|++++ ++.+.|+-...+.|+.+++++... .......+.........||+.+.+. | |+-+..++|.+-
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~----~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG----VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCC----CcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 44677899998 566778888889999999985210 0011222333445667899998774 6 577788899999
Q ss_pred eCCCc
Q 001245 268 PWEAI 272 (1115)
Q Consensus 268 dl~t~ 272 (1115)
++++.
T Consensus 499 ~ldG~ 503 (791)
T 3m0c_C 499 DTKGV 503 (791)
T ss_dssp ETTSS
T ss_pred eCCCC
Confidence 98753
No 308
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.25 E-value=4.1 Score=47.18 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=40.8
Q ss_pred ceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEe
Q 001245 193 SVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGS 259 (1115)
Q Consensus 193 ~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS 259 (1115)
....|++|| +++.|+.....+.|+.+|++++ .+..+.........|+|+++|+ |+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---------~v~~~~~~~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---------YVSTVYSGLSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---------EEEEEECCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---------EEEEEecCCCCcceEEEeCCCCEEEEEe
Confidence 456789998 4566666666689999999862 2334444455688999999998 75443
No 309
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=95.20 E-value=0.082 Score=50.31 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=49.6
Q ss_pred eeeccCcEEecc-ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEE
Q 001245 935 TIVSTNNIIIQN-QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEM 1013 (1115)
Q Consensus 935 ~~~~~~~i~~~~-~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i 1013 (1115)
.++++..+.|.. +....|+|+|.+.. ...|.+-|. -|.-.+|.|..|+|+||++++|
T Consensus 11 ~~~~p~~l~F~~~gg~~~l~L~N~t~~-~vAFKVKtT---------------------~p~~YrVrP~~G~I~Pg~~~~I 68 (116)
T 1m1s_A 11 INVDPPTGNYPATGGNSTHNITSESDS-RLAFKVKSS---------------------NNEHYRVRPVYGFVDAKGKSKL 68 (116)
T ss_dssp EEEESSEEEECTTCEEEEEEEEECSSS-EEEEEEEES---------------------CTTTEEEECSEEEECTTCEEEE
T ss_pred eecCCCeEEEecCCCEEEEEEECCCCC-eEEEEEEec---------------------CCCceEEcCCceEECCCCeEEE
Confidence 456677777753 45678999999886 888998762 1467899999999999999999
Q ss_pred EEEEe
Q 001245 1014 SVHHE 1018 (1115)
Q Consensus 1014 ~~~~~ 1018 (1115)
.|..-
T Consensus 69 ~I~~q 73 (116)
T 1m1s_A 69 DINRL 73 (116)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99863
No 310
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=95.15 E-value=0.066 Score=50.46 Aligned_cols=61 Identities=10% Similarity=0.234 Sum_probs=48.5
Q ss_pred eeeccCcEEecc-ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCeeEE
Q 001245 935 TIVSTNNIIIQN-QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRTAEM 1013 (1115)
Q Consensus 935 ~~~~~~~i~~~~-~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~~~i 1013 (1115)
+.|++.++.|.. .....|+|+|.+.. ...|.+-|. -|.-.+|.|..|+|+||++++|
T Consensus 3 L~i~P~~l~F~~~~~~~~l~L~N~t~~-~vaFKVKtT---------------------~p~~y~VrP~~G~I~P~~~~~i 60 (109)
T 1row_A 3 LTADPPACTVPAAGVSSTHKLVNGGAE-KIVFKIKSS---------------------NNNEYRIAPVFGFVDPSGSKDV 60 (109)
T ss_dssp CEEESSSEEEETTCEEEEEEEEECSSS-CEEEEEEES---------------------CSSSEEEECSEEEECTTEEEEE
T ss_pred EEEECCEeEEeCCCCeEEEEEEcCCCC-eEEEEEEeC---------------------CCCceEEcCCceEECCCCeEEE
Confidence 356666677753 34678999999886 889998762 1467899999999999999999
Q ss_pred EEEE
Q 001245 1014 SVHH 1017 (1115)
Q Consensus 1014 ~~~~ 1017 (1115)
.|.+
T Consensus 61 ~I~~ 64 (109)
T 1row_A 61 VITR 64 (109)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9886
No 311
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.03 E-value=5 Score=43.64 Aligned_cols=109 Identities=10% Similarity=0.002 Sum_probs=63.6
Q ss_pred eeeEEEEEe-CCeEEEe--CCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 133 CFLRTIVCT-EEQLWAG--GENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 133 ~~l~~l~~~-~~~l~ag--~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
.+...++.+ ++.||.+ .++.|..||.++..... .. . ...+..++++++|+++++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~-------------------~~-~--~~~p~gia~~~dG~l~vad 89 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH-------------------AT-V--EGKVSGLAFTSNGDLVATG 89 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE-------------------EE-C--SSEEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEE-------------------Ee-C--CCCceeEEEcCCCcEEEEe
Confidence 445566665 5567764 56789999876432110 11 1 2356789999999977776
Q ss_pred eCCC--eEEEEECCCCCCCCCCCCcceEEee--cCCCCEEEEEEeCCCcE-EEEeCCCcEEEEeCCCc
Q 001245 210 HRDG--RIMCWKMNARLLDSDDGFGEVLSWQ--AHRGPVLSLCISSYGDL-WSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 210 S~Dg--tIrlWdl~~~~~~~~~~~~~~~~l~--GH~~~V~sVafSpdG~L-~SgS~DgtIrvWdl~t~ 272 (1115)
.... .|..++..++. ...+. .....-..+++.+++.+ ++-+.++.|..+|..++
T Consensus 90 ~~~~~~~v~~~d~~~g~---------~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 90 WNADSIPVVSLVKSDGT---------VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp ECTTSCEEEEEECTTSC---------EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred ccCCcceEEEEcCCCCe---------EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 5433 35555655422 22221 12233466777776664 45556788888887653
No 312
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.78 E-value=0.62 Score=58.24 Aligned_cols=70 Identities=7% Similarity=-0.050 Sum_probs=44.8
Q ss_pred ceEEEEEc-CCCCEEEEEeC-C----CeEEEEECCCC-CCCCCCCCcceEEeecCCCCEEEEEEeCCCc-EEEEeCC---
Q 001245 193 SVMCMVGD-EASGVVWSGHR-D----GRIMCWKMNAR-LLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-LWSGSEG--- 261 (1115)
Q Consensus 193 ~V~~la~s-~dg~~LaSGS~-D----gtIrlWdl~~~-~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L~SgS~D--- 261 (1115)
.+...++| |||++||=+.. + .+|+++|++++ .. ... .+.+ ...+++|+|||+ |+-.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-----l~~--~~~~---~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-----IAD--KVSG---TNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-----CCC--CEEE---ECSCCEECSSTTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-----CCc--cccC---ceeeEEEecCCCEEEEEEECCCC
Confidence 56678999 99998884432 2 36999999974 31 010 1211 134688999997 6544544
Q ss_pred --CcEEEEeCCCc
Q 001245 262 --GGIKIWPWEAI 272 (1115)
Q Consensus 262 --gtIrvWdl~t~ 272 (1115)
..|.+|++.++
T Consensus 245 ~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 245 RENKVWRHVMGKL 257 (751)
T ss_dssp CEEEEEEEETTSC
T ss_pred CCCEEEEEECCCC
Confidence 25777787664
No 313
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=94.67 E-value=1.4 Score=55.10 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=60.4
Q ss_pred EEEEEcCCCc-EEEEe---CCCeEEEEcC-CC--Ce-eEEee-cCCCcEEEEE-ecCCEEEeeec-c----cEEEEEeCC
Q 001245 423 EALTTSIDGM-IWTGG---ANGLLLQWDP-NG--NR-LQDFQ-YLPFAVQCLC-TFGSQIWVGYM-N----GIVQVLDLE 487 (1115)
Q Consensus 423 ~aVa~S~Dg~-laSGS---~DgtIklWD~-tG--~~-l~tl~-gH~~~V~sla-~dG~~LaSGs~-D----GtIrlWD~~ 487 (1115)
..+.+|+||+ |+..+ ....|.++|+ ++ +. ++.+. .......++. .+|+.|+..+. + ..|.++|++
T Consensus 274 ~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 274 AFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred EEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 3466888886 44322 2346888898 44 33 14443 3445666766 55776665443 2 367777876
Q ss_pred C-ccccc-cccccC--CEEEEEecCC-EEEeecCCCceEEeeec
Q 001245 488 G-NLLGG-WVAHSS--PVIKMAVGAG-YIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 488 G-~ll~~-l~gH~~--~V~sva~dg~-~laSgS~DgtIRlWdl~ 526 (1115)
+ ..... +..|.. .+.++.++++ .+++...|+..++|-+.
T Consensus 354 ~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 354 QPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp STTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred CcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence 3 33344 555554 3455666555 45677788877777554
No 314
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=94.54 E-value=0.039 Score=59.55 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=28.3
Q ss_pred cCcceEEEEEEEecEEEEEEeecccccchhHHHHHHHHHHHHHhc
Q 001245 675 GNKGAVGLRVRVYDRIMCFVNCHFAAHLEAVNRRNADFDHVYRTM 719 (1115)
Q Consensus 675 gNKGaV~ir~~i~~t~l~FVn~HLaA~~~~~~~Rn~d~~~I~~~l 719 (1115)
+....++||+ . .+.|.|.|+.|.-+ ..|.+....|.+.+
T Consensus 129 ~~Rp~lgiri--~--~~~ff~tHa~a~~g--~da~a~v~~I~~~~ 167 (262)
T 2f1n_A 129 GGRPLLGIRI--G--NDAFFTAHAIAMRN--NDAPALVEEVYNFF 167 (262)
T ss_dssp TCCCEEEEEE--T--TEEEEEEECCSSSS--CSHHHHHHHHHHHH
T ss_pred CCCceEEEEE--C--CEEEEEEEecCCCC--ccHHHHHHHHHHHH
Confidence 3788888887 3 48899999999733 23667777777653
No 315
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=94.42 E-value=0.1 Score=50.50 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=49.5
Q ss_pred eeeccC-cEEec----cceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCC
Q 001245 935 TIVSTN-NIIIQ----NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1009 (1115)
Q Consensus 935 ~~~~~~-~i~~~----~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~ 1009 (1115)
+.+++. .+.|. .+....|+|+|.+.. ...|.+-+. .|.-+.|.|..|+|.||+
T Consensus 11 L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~-~vaFKVKTT---------------------~p~~y~VrP~~G~i~P~~ 68 (128)
T 1z9l_A 11 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTT---------------------APRRYCVRPNSGVIDPGS 68 (128)
T ss_dssp SEEESSSEEEEESCCSSCEEEEEEEECCSSS-CEEEEEEES---------------------CGGGEEEESCEEEECTTC
T ss_pred EEECCCCeEEEcCCCCceEEEEEEEECCCCC-eEEEEEECC---------------------CCCceEEeCCCcEECCCC
Confidence 567774 78874 234678999999986 889998751 245679999999999999
Q ss_pred eeEEEEEEe
Q 001245 1010 TAEMSVHHE 1018 (1115)
Q Consensus 1010 ~~~i~~~~~ 1018 (1115)
+++|.|.+.
T Consensus 69 s~~v~V~~~ 77 (128)
T 1z9l_A 69 IVTVSVMLQ 77 (128)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999964
No 316
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.39 E-value=9.1 Score=43.75 Aligned_cols=106 Identities=12% Similarity=0.074 Sum_probs=65.3
Q ss_pred eEEEEEcC-CCcE-EEEeC-CCeEEEEcCCCCeeEEeec-CCCcEEEEEe--cCCEEEeee-cccEEEEEeCCCcccccc
Q 001245 422 TEALTTSI-DGMI-WTGGA-NGLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1115)
Q Consensus 422 V~aVa~S~-Dg~l-aSGS~-DgtIklWD~tG~~l~tl~g-H~~~V~sla~--dG~~LaSGs-~DGtIrlWD~~G~ll~~l 494 (1115)
...|++.| +|.| ++-.. .+.|...+++|.....+.. .-..-+.|+. ++++|+.+. ..++|+..|++|.....+
T Consensus 204 P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 204 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred cceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence 45566665 4555 34322 3678888888766555532 2345677774 577777765 567999999987544444
Q ss_pred cc---ccCCEEEEEecCC-EEEeecCCCceEEeeecC
Q 001245 495 VA---HSSPVIKMAVGAG-YIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 495 ~g---H~~~V~sva~dg~-~laSgS~DgtIRlWdl~~ 527 (1115)
.. ....-.+|++++. ..++-...+.|..++..+
T Consensus 284 ~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 284 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 32 2334567776554 455666667787777444
No 317
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.39 E-value=8.8 Score=43.57 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=62.0
Q ss_pred ceEEEEEcCC-CcE-EEEeCC-CeEEEEcCCCCeeEEee-cCCCcEEEEE--ecCCEEEeee-cccEEEEEeCCCccccc
Q 001245 421 RTEALTTSID-GMI-WTGGAN-GLLLQWDPNGNRLQDFQ-YLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLEGNLLGG 493 (1115)
Q Consensus 421 ~V~aVa~S~D-g~l-aSGS~D-gtIklWD~tG~~l~tl~-gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~G~ll~~ 493 (1115)
....+++.|+ |.| ++-... +.|...+++|.....+. ..-..-+.|+ +++++|+.+. ..+.|..+|++|.....
T Consensus 203 ~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~ 282 (386)
T 3v65_B 203 KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA 282 (386)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEE
T ss_pred CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEE
Confidence 3456666653 444 444444 67888888776655553 2233456777 4566666654 56789999988654333
Q ss_pred cc-cccCCEEEEEecCC-EEEeecCCCceEEeee
Q 001245 494 WV-AHSSPVIKMAVGAG-YIFTLANHGGIRGWNV 525 (1115)
Q Consensus 494 l~-gH~~~V~sva~dg~-~laSgS~DgtIRlWdl 525 (1115)
+. ........|++++. ..++-...+.|...+.
T Consensus 283 ~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 283 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEECCCCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence 32 22334566775444 4456556666766663
No 318
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.14 E-value=0.13 Score=51.12 Aligned_cols=63 Identities=19% Similarity=0.397 Sum_probs=50.3
Q ss_pred eeeccC-cEEec----cceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCC
Q 001245 935 TIVSTN-NIIIQ----NQDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1009 (1115)
Q Consensus 935 ~~~~~~-~i~~~----~~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~ 1009 (1115)
+.|++. .|.|. .+....|+|+|.+.. ...|.|-+. .|.-+.|.|..|+|.||+
T Consensus 15 L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~-~VaFKVKTT---------------------~p~~y~VrP~~GiI~P~~ 72 (147)
T 2cri_A 15 LVLDPPSDLKFKGPFTDVVTTNLKLQNPSDR-KVCFKVKTT---------------------APRRYCVRPNSGIIDPGS 72 (147)
T ss_dssp SEEESSSEEEEECCSSSCCCEEEEEECCSSS-CEEEEEEES---------------------CTTSEEEESSEEECCTTC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEECCCCC-cEEEEEECC---------------------CCccEEEcCCCcEECCCC
Confidence 567775 78874 334678999999986 889998751 256779999999999999
Q ss_pred eeEEEEEEee
Q 001245 1010 TAEMSVHHED 1019 (1115)
Q Consensus 1010 ~~~i~~~~~~ 1019 (1115)
+++|.|.+..
T Consensus 73 s~~v~V~l~~ 82 (147)
T 2cri_A 73 IVTVSVMLQP 82 (147)
T ss_dssp EEEEEEEECC
T ss_pred eEEEEEEECC
Confidence 9999999743
No 319
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.83 E-value=10 Score=42.33 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=59.8
Q ss_pred eEEEEEcC-CCcE-EEEeCC-CeEEEEcCCCCeeEEeec-CCCcEEEEE--ecCCEEEeee-cccEEEEEeCCCcccccc
Q 001245 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1115)
Q Consensus 422 V~aVa~S~-Dg~l-aSGS~D-gtIklWD~tG~~l~tl~g-H~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~G~ll~~l 494 (1115)
...+++.| +|.| ++-... +.|...+++|.....+.. .-..-+.|+ +++++|+.+. ..+.|..+|.+|.....+
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~ 240 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE
Confidence 45566665 4454 454445 778888887766555532 233456677 3566666664 467899999886543332
Q ss_pred c-cccCCEEEEEecCCE-EEeecCCCceEEee
Q 001245 495 V-AHSSPVIKMAVGAGY-IFTLANHGGIRGWN 524 (1115)
Q Consensus 495 ~-gH~~~V~sva~dg~~-laSgS~DgtIRlWd 524 (1115)
. .......+|++++.. .++-...+.|...+
T Consensus 241 ~~~~~~~P~giav~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp ECSSCSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEECCEEEEecCCCCeEEEEE
Confidence 2 223345666654444 44544556665555
No 320
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.77 E-value=13 Score=43.12 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=40.8
Q ss_pred ceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCcEEEEe
Q 001245 193 SVMCMVGDEA--SGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGDLWSGS 259 (1115)
Q Consensus 193 ~V~~la~s~d--g~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~L~SgS 259 (1115)
....|+++++ ++.|+-+...+.|+.+|+.++ .+.++.+......+|+|+++|.|+-+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---------~v~~~~~~~~~P~giavd~dG~lyVad 199 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---------YVDIKTTNIGQCADVNFTLNGDMVVVD 199 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---------EEEEECCCCSCEEEEEECTTCCEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---------EEEEeecCCCCccEEEECCCCCEEEEc
Confidence 4568999984 455555554489999999652 344554555568999999999976444
No 321
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=93.71 E-value=0.14 Score=51.17 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=49.3
Q ss_pred eeeccC-cEEecc----ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCC
Q 001245 935 TIVSTN-NIIIQN----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDR 1009 (1115)
Q Consensus 935 ~~~~~~-~i~~~~----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~ 1009 (1115)
+.|++. ++.|.- +....|+|+|++.. ...|.+-+. -|.-..|.|..|+|.||+
T Consensus 19 L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~-~VaFKVKTT---------------------~p~~y~VrP~~GiI~P~~ 76 (152)
T 1wic_A 19 LHISPAEELYFGSIESGEKKTLIVLTNVTKN-IVAFKVRTT---------------------APEKYRVKPSNSSCDPGA 76 (152)
T ss_dssp BCBBSSSCBCCCCSSSSCCCEEEEEEBCSSS-CEEEEEEES---------------------CTTTEEEESSEEEECTTC
T ss_pred EEECCCCeEEEeCCCCceEEEEEEEEcCCCC-eEEEEEECC---------------------CCCceeecCCCcEECCCC
Confidence 556666 666652 33578999999986 889998751 245679999999999999
Q ss_pred eeEEEEEEee
Q 001245 1010 TAEMSVHHED 1019 (1115)
Q Consensus 1010 ~~~i~~~~~~ 1019 (1115)
+++|.|.+..
T Consensus 77 s~~V~V~lq~ 86 (152)
T 1wic_A 77 SIDIIVSPHG 86 (152)
T ss_dssp EEEEEEEECS
T ss_pred eEEEEEEecC
Confidence 9999999743
No 322
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.96 E-value=13 Score=40.94 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=40.8
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEcC-CCCeeEEee---cCCCcEEEEEe-cCCEEEeeecccEEEEEeC
Q 001245 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGNRLQDFQ---YLPFAVQCLCT-FGSQIWVGYMNGIVQVLDL 486 (1115)
Q Consensus 421 ~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~~l~tl~---gH~~~V~sla~-dG~~LaSGs~DGtIrlWD~ 486 (1115)
.+.++++.+++.++.++.++.| ++.. .|+-=+.+. .+...+.+|.+ ++..++.++.+|+|.-++-
T Consensus 251 ~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 251 GFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred ceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 3566777777777766678877 5555 354333333 12345667764 4566777778998877764
No 323
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=92.69 E-value=27 Score=43.82 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=63.5
Q ss_pred eEEEEEcCC-CcE-EEEeCC-CeEEEEcCCCCeeEEeec-CCCcEEEEEe--cCCEEEeee-cccEEEEEeCCCcccccc
Q 001245 422 TEALTTSID-GMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLCT--FGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1115)
Q Consensus 422 V~aVa~S~D-g~l-aSGS~D-gtIklWD~tG~~l~tl~g-H~~~V~sla~--dG~~LaSGs-~DGtIrlWD~~G~ll~~l 494 (1115)
...|++.+. |.| |+-..+ +.|...+++|....++.. .-...+.|+. .+++|+.+. ....|+..|++|.....+
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v 595 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE
Confidence 456777664 555 343233 678888888876666543 2346777884 466777664 467899999987654444
Q ss_pred cc---ccCCEEEEEecCCEEE-eecCCCceEEeeec
Q 001245 495 VA---HSSPVIKMAVGAGYIF-TLANHGGIRGWNVT 526 (1115)
Q Consensus 495 ~g---H~~~V~sva~dg~~la-SgS~DgtIRlWdl~ 526 (1115)
.. ......+|++++.+|+ +-...+.|..-+..
T Consensus 596 ~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred ecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCC
Confidence 32 2234567776555554 44455666555533
No 324
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=92.03 E-value=17 Score=39.88 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=63.7
Q ss_pred eEEEEEcC-CCcE-EEEeCC-CeEEEEcCCCCeeEEeec-CCCcEEEEE--ecCCEEEeee-cccEEEEEeCCCcccccc
Q 001245 422 TEALTTSI-DGMI-WTGGAN-GLLLQWDPNGNRLQDFQY-LPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLEGNLLGGW 494 (1115)
Q Consensus 422 V~aVa~S~-Dg~l-aSGS~D-gtIklWD~tG~~l~tl~g-H~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~G~ll~~l 494 (1115)
...+++.| +|.| ++.... +.|...+++|...+.+.. .-..-+.|+ +++++|+.+. ..+.|...|.+|...+.+
T Consensus 122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (316)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence 45566665 4555 343333 678888888876665532 234566777 4577776665 567999999987544444
Q ss_pred cc---ccCCEEEEEecCCE-EEeecCCCceEEeeecC
Q 001245 495 VA---HSSPVIKMAVGAGY-IFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 495 ~g---H~~~V~sva~dg~~-laSgS~DgtIRlWdl~~ 527 (1115)
.. .......|++++.. .++-...+.|...+..+
T Consensus 202 ~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred eecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCC
Confidence 22 12345677765554 44555667777776443
No 325
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=91.66 E-value=7.6 Score=47.35 Aligned_cols=79 Identities=6% Similarity=0.000 Sum_probs=43.0
Q ss_pred CCeEEEEcC-CCCeeEEeecCCC---------cEEEEE---ecCCEEEeeeccc-----------EEEEEeCCC-c--cc
Q 001245 439 NGLLLQWDP-NGNRLQDFQYLPF---------AVQCLC---TFGSQIWVGYMNG-----------IVQVLDLEG-N--LL 491 (1115)
Q Consensus 439 DgtIklWD~-tG~~l~tl~gH~~---------~V~sla---~dG~~LaSGs~DG-----------tIrlWD~~G-~--ll 491 (1115)
...+..||. +.........+.. .-.++. .+|++++.|+.++ .|.+||.+. + .+
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 346788998 4443333322211 123333 3688888888543 788999752 2 11
Q ss_pred c--ccccccCCEEEEEe-cCCEEEeecCC
Q 001245 492 G--GWVAHSSPVIKMAV-GAGYIFTLANH 517 (1115)
Q Consensus 492 ~--~l~gH~~~V~sva~-dg~~laSgS~D 517 (1115)
. .+......-.++.. +|+.++.|+.+
T Consensus 448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 448 ASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred ccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 1 22211122233444 89999998865
No 326
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=91.61 E-value=4.8 Score=48.66 Aligned_cols=97 Identities=9% Similarity=0.089 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCc-E-EEEeCCCeEEEEcCC-CC------------eeEEeecCCCcE-EEEEecCCEEEeee-cccEEEE
Q 001245 421 RTEALTTSIDGM-I-WTGGANGLLLQWDPN-GN------------RLQDFQYLPFAV-QCLCTFGSQIWVGY-MNGIVQV 483 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-l-aSGS~DgtIklWD~t-G~------------~l~tl~gH~~~V-~sla~dG~~LaSGs-~DGtIrl 483 (1115)
...++.++|||+ + +++-.+.+|.++|++ .+ .+.+..-..++- +.+.++| ++++.. .|++|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence 445689999998 3 566678999999994 31 334444444432 2333678 777665 6999999
Q ss_pred EeCCC-----------ccccccccccCCE--EE-----EEecCCEEEee---cCCC
Q 001245 484 LDLEG-----------NLLGGWVAHSSPV--IK-----MAVGAGYIFTL---ANHG 518 (1115)
Q Consensus 484 WD~~G-----------~ll~~l~gH~~~V--~s-----va~dg~~laSg---S~Dg 518 (1115)
||++. +.+.++.-|-.+- .. +.+||++|+++ |.|.
T Consensus 357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 99742 3455555554321 11 12689998876 4464
No 327
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=89.79 E-value=43 Score=40.74 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=62.3
Q ss_pred eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCCC
Q 001245 148 GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHRDGRIMCWKMNARLLD 226 (1115)
Q Consensus 148 g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~DgtIrlWdl~~~~~~ 226 (1115)
+..+.|+.-|+++..... ..|. .|...+..|+|++. +.+.||-..++.|..+++++..
T Consensus 12 s~~~~I~~i~l~~~~~~~---------------~~~~----~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-- 70 (628)
T 4a0p_A 12 SRRADIRRISLETNNNNV---------------AIPL----TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-- 70 (628)
T ss_dssp EETTEEEEEESSCTTCEE---------------ECCC----CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--
T ss_pred EeCCcEEEEECCCCCcce---------------EEEc----CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--
Confidence 456688888887543211 1121 12345778999985 6666787788999999998621
Q ss_pred CCCCCcceEEeecCCCCEEEEEEeCCC-cE-EEEeCCCcEEEEeCCCc
Q 001245 227 SDDGFGEVLSWQAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWPWEAI 272 (1115)
Q Consensus 227 ~~~~~~~~~~l~GH~~~V~sVafSpdG-~L-~SgS~DgtIrvWdl~t~ 272 (1115)
....+..-......||+.+.+ .| ++-+..+.|.+-++++.
T Consensus 71 ------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 71 ------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp ------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred ------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 111222222456789999765 46 57667788888888653
No 328
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=89.52 E-value=7 Score=45.72 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=70.1
Q ss_pred eeEEEEEeCCeEEEe--C------CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCE
Q 001245 134 FLRTIVCTEEQLWAG--G------ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGV 205 (1115)
Q Consensus 134 ~l~~l~~~~~~l~ag--~------D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~ 205 (1115)
.-.++.|..+.++.+ + .++|-+.|.+|+...++. .-+.... .--..+-++|+++.
T Consensus 139 ~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~--------~~~~~~~---------~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 139 RLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKW--------EIDRGDQ---------YLAYDFWWNLPNEV 201 (462)
T ss_dssp EEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEEC--------CSBCTTC---------CCCCCEEEETTTTE
T ss_pred cccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEE--------ccCCCCc---------cccceEEECCCCCE
Confidence 566777774446652 2 368999999988866530 0000000 11123667899998
Q ss_pred EEEEe-------------------CCCeEEEEECCCCCCCCCCCCcceEEeec--CCCCEEEEEE--eCCCc-E-EEEe-
Q 001245 206 VWSGH-------------------RDGRIMCWKMNARLLDSDDGFGEVLSWQA--HRGPVLSLCI--SSYGD-L-WSGS- 259 (1115)
Q Consensus 206 LaSGS-------------------~DgtIrlWdl~~~~~~~~~~~~~~~~l~G--H~~~V~sVaf--SpdG~-L-~SgS- 259 (1115)
++|.. .+.+|.+||++++ +...++.- .......|.| +|+|+ + +++-
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~--------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~ 273 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR--------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVV 273 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEE
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCCC--------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEee
Confidence 88874 5789999999863 23334422 1123345656 99998 4 4555
Q ss_pred ----CCCcEEEEeCCC
Q 001245 260 ----EGGGIKIWPWEA 271 (1115)
Q Consensus 260 ----~DgtIrvWdl~t 271 (1115)
.+++|-+|..+.
T Consensus 274 ~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 274 SLKDLSSSIWLWFYED 289 (462)
T ss_dssp ETTTCCEEEEEEEEET
T ss_pred eccCCCceEEEEEecC
Confidence 778999988754
No 329
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=89.00 E-value=0.98 Score=47.68 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=47.7
Q ss_pred eeccCcEEecc-----ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCCCCe
Q 001245 936 IVSTNNIIIQN-----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKPDRT 1010 (1115)
Q Consensus 936 ~~~~~~i~~~~-----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p~~~ 1010 (1115)
.++.+.|+|+. .....++++|+|.. +..++++. .|+|+.+.+..+.|.||++
T Consensus 4 ~~~~~~idFg~v~~g~~~~~~~~i~N~g~~-pl~i~~~~----------------------~p~~~~~~~~~~~I~PG~~ 60 (220)
T 2qsv_A 4 QVSNARLLFPISMPEDEGVVRLVVNNTDES-DLQVAVVS----------------------LPSFVSLDDRAFRLQAREP 60 (220)
T ss_dssp EESCSEEECCSBCTTCCCEEEEEEEECSSS-CEEEEEEE----------------------CCTTEECSCCEEEECSSSC
T ss_pred EEecCeeEcccccCCCcceEEEEEEeCCCC-ceEEEecc----------------------CCCceEeeeCcceeCCCCc
Confidence 45666666664 45678999999987 87777652 2578999999999999999
Q ss_pred eEEEEEEe
Q 001245 1011 AEMSVHHE 1018 (1115)
Q Consensus 1011 ~~i~~~~~ 1018 (1115)
.+|.++..
T Consensus 61 g~I~vt~~ 68 (220)
T 2qsv_A 61 RELNLSLA 68 (220)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEc
Confidence 99999974
No 330
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=86.02 E-value=3.7 Score=50.85 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=46.5
Q ss_pred CceEEEEEcCC-CcE-EEEeCCCeEEEEcCCCCeeEEeecC---CCcEEEEEecCCEEE-eeecccEEEEEeC-CCcccc
Q 001245 420 RRTEALTTSID-GMI-WTGGANGLLLQWDPNGNRLQDFQYL---PFAVQCLCTFGSQIW-VGYMNGIVQVLDL-EGNLLG 492 (1115)
Q Consensus 420 ~~V~aVa~S~D-g~l-aSGS~DgtIklWD~tG~~l~tl~gH---~~~V~sla~dG~~La-SGs~DGtIrlWD~-~G~ll~ 492 (1115)
...+.|+++++ +.| ++-+..+.|..+|++|...+++... ......|+.++..|+ +....+.|..+|. +|+.+.
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 619 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence 45667999986 456 4555677899999977655554321 122334555554444 5556688888886 366555
Q ss_pred cc
Q 001245 493 GW 494 (1115)
Q Consensus 493 ~l 494 (1115)
.+
T Consensus 620 ~i 621 (699)
T 1n7d_A 620 LL 621 (699)
T ss_dssp CC
T ss_pred Ee
Confidence 44
No 331
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=84.30 E-value=38 Score=38.90 Aligned_cols=68 Identities=9% Similarity=0.034 Sum_probs=44.4
Q ss_pred ceEEEEEcC-CCcEEEE-eCCCeEEEEcCCCCeeEEe-ec-CCCcEEEEE--ecCCEEEeee-cccEEEEEeCCC
Q 001245 421 RTEALTTSI-DGMIWTG-GANGLLLQWDPNGNRLQDF-QY-LPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLEG 488 (1115)
Q Consensus 421 ~V~aVa~S~-Dg~laSG-S~DgtIklWD~tG~~l~tl-~g-H~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~G 488 (1115)
....++++| +|.|+.+ ..++.|..+|.++..+..+ .. ....-..|+ ++|++|+.+. ..+.|..+|.++
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 456688888 7887644 4578899999965544222 21 112344566 7899666654 678999988654
No 332
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=83.72 E-value=1.2e+02 Score=39.67 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=58.0
Q ss_pred CeEEEEcC-CCCeeEEeecCC-CcEEEEE---e-c--CCEEEeee----------cccEEEEEeCCCcccccc--ccccC
Q 001245 440 GLLLQWDP-NGNRLQDFQYLP-FAVQCLC---T-F--GSQIWVGY----------MNGIVQVLDLEGNLLGGW--VAHSS 499 (1115)
Q Consensus 440 gtIklWD~-tG~~l~tl~gH~-~~V~sla---~-d--G~~LaSGs----------~DGtIrlWD~~G~ll~~l--~gH~~ 499 (1115)
+.|++.|. +.+.+.++.-.. ..+.|++ . + ..+|++|. ..|.|.++++.+..+.-+ ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 36999998 777777665433 3577777 2 2 36899887 358999999853222211 13467
Q ss_pred CEEEEE-ecCCEEEeecCCCceEEeeecC
Q 001245 500 PVIKMA-VGAGYIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 500 ~V~sva-~dg~~laSgS~DgtIRlWdl~~ 527 (1115)
.|++|. ++|..+++.+ ++|++|++..
T Consensus 887 ~v~al~~~~g~Lla~ig--~~l~vy~l~~ 913 (1158)
T 3ei3_A 887 AVYSMVEFNGKLLASIN--STVRLYEWTT 913 (1158)
T ss_dssp CEEEEEEETTEEEEEET--TEEEEEEECT
T ss_pred cCEEEeeeCCEEEEEcC--CEEEEEECCC
Confidence 899998 6886666554 7899999864
No 333
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=83.59 E-value=31 Score=38.60 Aligned_cols=66 Identities=8% Similarity=0.042 Sum_probs=43.8
Q ss_pred eEEEEEcCCCcE-EEEeCC-CeEEEEcCCCCeeEEeecCC------CcEEEEE--ecCCEEEeeecccEEEEEeCC
Q 001245 422 TEALTTSIDGMI-WTGGAN-GLLLQWDPNGNRLQDFQYLP------FAVQCLC--TFGSQIWVGYMNGIVQVLDLE 487 (1115)
Q Consensus 422 V~aVa~S~Dg~l-aSGS~D-gtIklWD~tG~~l~tl~gH~------~~V~sla--~dG~~LaSGs~DGtIrlWD~~ 487 (1115)
.+.+++.++|.+ ++++.- +.|...|.+|+.+..+.-.. ...+.|+ |+|.+|++....|.+..+|+.
T Consensus 139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 139 VVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 455677777775 456666 77777777776554432111 1133555 789888888779999999976
No 334
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=83.54 E-value=64 Score=36.37 Aligned_cols=60 Identities=12% Similarity=0.268 Sum_probs=38.3
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeC----CCc---EE--EEeC--CCcEEEEe
Q 001245 200 DEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISS----YGD---LW--SGSE--GGGIKIWP 268 (1115)
Q Consensus 200 s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSp----dG~---L~--SgS~--DgtIrvWd 268 (1115)
+|..++++.-.+.+-+.++|+++ +.+..+.+ +.++.|.+-| .|+ |+ |.-. +++|++++
T Consensus 37 dp~~s~ii~t~k~~gL~Vydl~G---------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 37 TPQNSKLITTNKKSGLVVYSLDG---------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp CGGGCEEEEEETTTEEEEEETTS---------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CCCccEEEEEcCCCCEEEEcCCC---------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 44455666667778899999975 44555543 5566666555 232 43 3334 68999997
Q ss_pred CC
Q 001245 269 WE 270 (1115)
Q Consensus 269 l~ 270 (1115)
++
T Consensus 106 iD 107 (355)
T 3amr_A 106 ID 107 (355)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 335
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=82.03 E-value=64 Score=35.33 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=58.5
Q ss_pred EEEEEcCC-CcEEEEe--CCCeEEEEcCCCCeeEEee-cCCCcEEEEE--ecCCEEEeee-cccEEEEEeCCCccccccc
Q 001245 423 EALTTSID-GMIWTGG--ANGLLLQWDPNGNRLQDFQ-YLPFAVQCLC--TFGSQIWVGY-MNGIVQVLDLEGNLLGGWV 495 (1115)
Q Consensus 423 ~aVa~S~D-g~laSGS--~DgtIklWD~tG~~l~tl~-gH~~~V~sla--~dG~~LaSGs-~DGtIrlWD~~G~ll~~l~ 495 (1115)
..+++.|. |.|+-.. ..+.|...+++|.....+. ..-..-+.|+ +++++|+.+. ..+.|..+|.+|.....+.
T Consensus 125 ~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 204 (318)
T 3sov_A 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV 204 (318)
T ss_dssp EEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe
Confidence 44555543 4443222 2466777777776555443 2223445666 4466666664 4678999998865433332
Q ss_pred -cccCCEEEEEecCC-EEEeecCCCceEEeeecC
Q 001245 496 -AHSSPVIKMAVGAG-YIFTLANHGGIRGWNVTS 527 (1115)
Q Consensus 496 -gH~~~V~sva~dg~-~laSgS~DgtIRlWdl~~ 527 (1115)
+.......|++++. ..++-...+.|...+..+
T Consensus 205 ~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 205 KGSLPHPFALTLFEDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSCCSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred cCCCCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence 23344566776544 445655566777666543
No 336
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=81.09 E-value=43 Score=38.60 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=43.7
Q ss_pred ceEEEEEcC-CCcEEEEe-CCCeEEEEcC-CCCeeEEeec-CC-CcEEEEE--ecCCEEEeee-cccEEEEEeCC
Q 001245 421 RTEALTTSI-DGMIWTGG-ANGLLLQWDP-NGNRLQDFQY-LP-FAVQCLC--TFGSQIWVGY-MNGIVQVLDLE 487 (1115)
Q Consensus 421 ~V~aVa~S~-Dg~laSGS-~DgtIklWD~-tG~~l~tl~g-H~-~~V~sla--~dG~~LaSGs-~DGtIrlWD~~ 487 (1115)
....+++.+ +|.|+.+. .++.|..+|. +|.....+.. .. ..-..|+ ++|++|+.+. ..+.|+.+|.+
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 345578888 78887554 5678999999 5776333322 11 1222455 7898776665 56899998865
No 337
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=79.92 E-value=1.1e+02 Score=36.90 Aligned_cols=295 Identities=12% Similarity=0.075 Sum_probs=148.9
Q ss_pred CceEEEEEcCC-CCEEEEEeC-CCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-E-EEEeCCCcEEEE
Q 001245 192 SSVMCMVGDEA-SGVVWSGHR-DGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD-L-WSGSEGGGIKIW 267 (1115)
Q Consensus 192 ~~V~~la~s~d-g~~LaSGS~-DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~-L-~SgS~DgtIrvW 267 (1115)
.....|+++|. |.+.||-.. .+.|...++++. ....+...-..-+.|++++++. | ++=+..+.|...
T Consensus 123 ~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~---------~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS---------ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---------SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC---------ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 34678999985 666666432 567888888762 1223333445678999999754 6 566677889999
Q ss_pred eCCCcceeeccCCCcceeEEEEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEE
Q 001245 268 PWEAIEKALSLKPEERHTAALIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLK 346 (1115)
Q Consensus 268 dl~t~~~~l~~~~~~~~~~a~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~ 346 (1115)
|+++....+ + . . .+ ..-..++... +...|+-. .+.|..-|..+|+...
T Consensus 194 d~dG~~~~v-~-----------~-~---~l--------------~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 194 NMLGLNREV-I-----------A-D---DL--------------PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp ETTSCSCEE-E-----------E-E---CC--------------SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred cCCCCceEE-e-----------e-c---cC--------------CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 987632210 0 0 0 00 1112344443 34555543 4678888877776555
Q ss_pred EEecCCc-eeeEEeccCCCCcccc----cc---ceEEEEec-CCCC--cc------ceeeeeeccccceEEeccCcEEEE
Q 001245 347 VFNIDGQ-IENRVDMSLLPDFAME----DE---FKTKIVTS-SKKD--KA------QSSFGFFQRSRNAIMGAADAVRRV 409 (1115)
Q Consensus 347 tl~~~~~-~~~~v~~s~~~~~~~~----~~---~~~~~~~~-~~~~--~~------~~~v~f~~~~~~~~~Gs~d~v~~~ 409 (1115)
++..... +..-..+++....... .. ....+... .... .. .....+......++......+++.
T Consensus 243 ~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i 322 (628)
T 4a0p_A 243 IIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRM 322 (628)
T ss_dssp EEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEE
T ss_pred EEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEE
Confidence 5532211 1111112221111000 00 00111111 0000 00 000011111222333334445555
Q ss_pred ecccc------c-ccCCCceEEEEEcCC-CcE-EEEeCCCeEEEEcCCCCeeEE-eec------CCCcEEEEEec--CCE
Q 001245 410 AAKGG------F-GDDNRRTEALTTSID-GMI-WTGGANGLLLQWDPNGNRLQD-FQY------LPFAVQCLCTF--GSQ 471 (1115)
Q Consensus 410 ~~~g~------l-~~h~~~V~aVa~S~D-g~l-aSGS~DgtIklWD~tG~~l~t-l~g------H~~~V~sla~d--G~~ 471 (1115)
..... + ......+.+|++.+. +.| ++=...+.|+.++.+|....+ +.. ....+..||.| ++.
T Consensus 323 ~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~n 402 (628)
T 4a0p_A 323 VIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY 402 (628)
T ss_dssp CCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTE
T ss_pred ecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCe
Confidence 43211 1 112345777888764 565 565567889999997754333 222 23467788855 565
Q ss_pred EE-eeecccEEEEEeCCCccccccc-cccCCEEEEEec---CCEEEeecCCCceEEeeec
Q 001245 472 IW-VGYMNGIVQVLDLEGNLLGGWV-AHSSPVIKMAVG---AGYIFTLANHGGIRGWNVT 526 (1115)
Q Consensus 472 La-SGs~DGtIrlWD~~G~ll~~l~-gH~~~V~sva~d---g~~laSgS~DgtIRlWdl~ 526 (1115)
|+ +-+..++|.+-+++|+....+. .......+|++| |.+.+|-.....-+||.+.
T Consensus 403 LY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~ 462 (628)
T 4a0p_A 403 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAA 462 (628)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEe
Confidence 54 6567889999999987655543 334567888875 3344453222222555543
No 338
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=79.82 E-value=85 Score=35.34 Aligned_cols=107 Identities=11% Similarity=0.209 Sum_probs=68.6
Q ss_pred CceEEEEE--cCC-Cc--EEEEeCCCeEEEEcC--C--C----CeeEEeecCCCcEEEEE-ecCCEEEeeecccEEEEEe
Q 001245 420 RRTEALTT--SID-GM--IWTGGANGLLLQWDP--N--G----NRLQDFQYLPFAVQCLC-TFGSQIWVGYMNGIVQVLD 485 (1115)
Q Consensus 420 ~~V~aVa~--S~D-g~--laSGS~DgtIklWD~--t--G----~~l~tl~gH~~~V~sla-~dG~~LaSGs~DGtIrlWD 485 (1115)
..+..+++ ++. +. ++....+|.+..|++ + | +++++|.-.+..=-|++ +...+|+.|-++.-|..+|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d 207 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFS 207 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence 45555676 663 53 677788899999987 2 2 56788876554444444 3478999999987777777
Q ss_pred CC------Ccccccc-ccccC-CEEEEEe----cCC-EEEeec-CCCceEEeeec
Q 001245 486 LE------GNLLGGW-VAHSS-PVIKMAV----GAG-YIFTLA-NHGGIRGWNVT 526 (1115)
Q Consensus 486 ~~------G~ll~~l-~gH~~-~V~sva~----dg~-~laSgS-~DgtIRlWdl~ 526 (1115)
.+ ++++..+ .+|-. .+-.|+. +|+ +|+..| .+++.-++|..
T Consensus 208 a~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 208 AEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 54 2344443 23332 5666664 344 555444 67889999864
No 339
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=79.10 E-value=1.1e+02 Score=36.12 Aligned_cols=61 Identities=8% Similarity=-0.031 Sum_probs=39.2
Q ss_pred ceEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeec----CCCCEEEEEE-------eCCCc-EEEE
Q 001245 193 SVMCMVGDE-ASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA----HRGPVLSLCI-------SSYGD-LWSG 258 (1115)
Q Consensus 193 ~V~~la~s~-dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G----H~~~V~sVaf-------SpdG~-L~Sg 258 (1115)
....|+||| +.. +.++-...+.|++.|+.++ .+.++.. .......|+| +++|. |+.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 466899998 344 4444444467888898862 3334322 1235899999 99998 7766
Q ss_pred eCCC
Q 001245 259 SEGG 262 (1115)
Q Consensus 259 S~Dg 262 (1115)
...+
T Consensus 211 d~~~ 214 (496)
T 3kya_A 211 IDYD 214 (496)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 5543
No 340
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=78.00 E-value=2.6 Score=52.27 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=44.3
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC-CcE-EEEeCCCcEEEEeC
Q 001245 193 SVMCMVGDEAS-GVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWPW 269 (1115)
Q Consensus 193 ~V~~la~s~dg-~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~L-~SgS~DgtIrvWdl 269 (1115)
.+..|++++.+ .+.|+-...+.|+.+++++... .. .....+.........|++.+. +.| ++-...++|.+.++
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~--~~--~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--VS--SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 482 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC---C--CCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCC--Cc--ceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEec
Confidence 34568899854 4556656778999999875100 00 001111111223457888854 455 56566789999998
Q ss_pred CCc
Q 001245 270 EAI 272 (1115)
Q Consensus 270 ~t~ 272 (1115)
++.
T Consensus 483 dg~ 485 (699)
T 1n7d_A 483 KGV 485 (699)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 341
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=77.04 E-value=15 Score=41.12 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=47.6
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEcCCCC-eeEEee---cCCCcEEEEE--ec---CCEEEeeec----c----cEEE
Q 001245 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGN-RLQDFQ---YLPFAVQCLC--TF---GSQIWVGYM----N----GIVQ 482 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~-~l~tl~---gH~~~V~sla--~d---G~~LaSGs~----D----GtIr 482 (1115)
.....+++.+||.|+.+..++.|+++|.+|+ .+..+. ........|+ ++ +.+|+++.. + ..|.
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 4567899999999888888899999987775 222221 1234577788 44 567777654 3 6788
Q ss_pred EEeCCC
Q 001245 483 VLDLEG 488 (1115)
Q Consensus 483 lWD~~G 488 (1115)
.|+.++
T Consensus 109 r~~~~~ 114 (354)
T 3a9g_A 109 RGRLDG 114 (354)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 888653
No 342
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=76.46 E-value=1e+02 Score=34.41 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=43.8
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEECCCCCCCCCCCCcceEEeec----CCC--CEEEEEE---eCCCcEEEEeC-----
Q 001245 196 CMVGDEASGVVWSGH-RDGRIMCWKMNARLLDSDDGFGEVLSWQA----HRG--PVLSLCI---SSYGDLWSGSE----- 260 (1115)
Q Consensus 196 ~la~s~dg~~LaSGS-~DgtIrlWdl~~~~~~~~~~~~~~~~l~G----H~~--~V~sVaf---SpdG~L~SgS~----- 260 (1115)
|.++++..++++-++ ..|+|-.|+..++.. .++ .+.+ ... .+..|.+ .|+|+|+..+.
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH------FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCE------EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeE------EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 678888656666666 899999999975211 111 2222 111 3579999 68887654332
Q ss_pred ---------CCcEEEEeCC
Q 001245 261 ---------GGGIKIWPWE 270 (1115)
Q Consensus 261 ---------DgtIrvWdl~ 270 (1115)
+..|..+|+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~ 108 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLP 108 (334)
T ss_dssp CTTSCCSSSCCEEEEEESS
T ss_pred cccccccCCCCEEEEEcCC
Confidence 6778888987
No 343
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=75.54 E-value=7.8 Score=40.67 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=47.7
Q ss_pred CCceeeccCcEEecc----ceeEEEEEEecCceeeeEEEEeecCCcccccCCCCCCCCCCCCCCCCCceEEccCceeeCC
Q 001245 932 IPETIVSTNNIIIQN----QDTSILRVTNKCGKKDAFYQINCEGQSTVKDDGQASDRHPRGSFGFPRWLEVTPATGMIKP 1007 (1115)
Q Consensus 932 ~p~~~~~~~~i~~~~----~~~~~l~i~N~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WL~v~p~~g~i~p 1007 (1115)
.|+..++ ..++|+. .....++|+|+|.. +....-+. ..| ..+.+++....|.|
T Consensus 117 ~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~-pL~I~~v~--------------------~sc-gct~~~~~~~~i~P 173 (220)
T 2qsv_A 117 TGVMELS-TYLDMGQLDGETTKAAIEIRNVGAG-PLRLHSVT--------------------TRN-PALTAVPDRTEIKP 173 (220)
T ss_dssp CCCEECC-CEEEEEECTTSCEEEEEEEEECSSS-CEEEEEEE--------------------ECS-TTEEEEESCSEECT
T ss_pred CCEEEEE-eEEeeeccCCCeEEEEEEEEECCCC-CEEEEEEE--------------------eCC-CCEeeecCCccCCC
Confidence 4667777 7777763 44668999999987 55544331 114 47889999999999
Q ss_pred CCeeEEEEEEe
Q 001245 1008 DRTAEMSVHHE 1018 (1115)
Q Consensus 1008 ~~~~~i~~~~~ 1018 (1115)
||+.+|+++..
T Consensus 174 Ge~~~i~v~~~ 184 (220)
T 2qsv_A 174 GGSTLLRIAVD 184 (220)
T ss_dssp TCEEEEEEEEC
T ss_pred CCEEEEEEEEe
Confidence 99999999975
No 344
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=65.11 E-value=52 Score=36.57 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=46.5
Q ss_pred CceEEEEEcCCCcEEEEeCCCeEEEEcCCCCe--eEEee---cCCCcEEEEE--ec---CCEEEeeecc------cEEEE
Q 001245 420 RRTEALTTSIDGMIWTGGANGLLLQWDPNGNR--LQDFQ---YLPFAVQCLC--TF---GSQIWVGYMN------GIVQV 483 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~laSGS~DgtIklWD~tG~~--l~tl~---gH~~~V~sla--~d---G~~LaSGs~D------GtIrl 483 (1115)
.....+++.+||.++.+..++.|++++ +|+. +..+. ........|+ ++ +.+|+++... +.|..
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 356789999999988888889999998 6642 22221 1234567777 44 5677777653 67888
Q ss_pred EeCCC
Q 001245 484 LDLEG 488 (1115)
Q Consensus 484 WD~~G 488 (1115)
++.++
T Consensus 110 ~~~~~ 114 (352)
T 2ism_A 110 LRHLG 114 (352)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 88763
No 345
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=64.10 E-value=1.9e+02 Score=32.43 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCc-EE-EEeCCCeEEEEcC--CCCee--EEeecCCCcEEEEE--e-cCCEEEeeecc-cEEEEEeCC
Q 001245 420 RRTEALTTSIDGM-IW-TGGANGLLLQWDP--NGNRL--QDFQYLPFAVQCLC--T-FGSQIWVGYMN-GIVQVLDLE 487 (1115)
Q Consensus 420 ~~V~aVa~S~Dg~-la-SGS~DgtIklWD~--tG~~l--~tl~gH~~~V~sla--~-dG~~LaSGs~D-GtIrlWD~~ 487 (1115)
...+.+++|||++ ++ +-+..+.|..||+ +|+.. +.+. -....-.++ . +|.+.+++.-+ +.|..||.+
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 4567899999996 54 4555789999998 35432 2332 123344455 3 25544334323 344444543
No 346
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=62.05 E-value=2.7e+02 Score=33.53 Aligned_cols=312 Identities=13% Similarity=0.074 Sum_probs=155.0
Q ss_pred EEEEe--CCeEEE--eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCC-CCEEEEEeC
Q 001245 137 TIVCT--EEQLWA--GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEA-SGVVWSGHR 211 (1115)
Q Consensus 137 ~l~~~--~~~l~a--g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~d-g~~LaSGS~ 211 (1115)
-||.+ ++.||. ...+.|.+-|++.... +. +.. .. ......|+++|. |.+.||-..
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~-----------------l~~-~~-l~~P~~Iavdp~~g~ly~tD~g 147 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KV-----------------LFW-QE-LDQPRAIALDPSSGFMYWTDWG 147 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE-----------------EEC-SS-CSCCCCEEEETTTTEEEEEECS
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EE-----------------EEe-CC-CCCCceEEEecCCCeEEEeccC
Confidence 45555 455555 3567898988864332 11 010 01 224557999986 556666533
Q ss_pred -CCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCC-cE-EEEeCCCcEEEEeCCCcceeeccCCCcceeEE
Q 001245 212 -DGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYG-DL-WSGSEGGGIKIWPWEAIEKALSLKPEERHTAA 287 (1115)
Q Consensus 212 -DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG-~L-~SgS~DgtIrvWdl~t~~~~l~~~~~~~~~~a 287 (1115)
.+.|..-++++. ....+ ...-..-+.|++++++ +| ++=+..++|...|+++.........
T Consensus 148 ~~~~I~r~~~dG~---------~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~------- 211 (619)
T 3s94_A 148 EVPKIERAGMDGS---------SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG------- 211 (619)
T ss_dssp SSCEEEEEETTSC---------SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------
T ss_pred CCCEEEEEECCCC---------ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC-------
Confidence 456777777752 12222 2234467899999865 46 4656677888888865322100000
Q ss_pred EEeeeeeeeecccceecceeeeecCCeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEecCC-ceeeEEeccCCCC
Q 001245 288 LIVERSYIDLRSHLSVNGFSSILTSDIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFNIDG-QIENRVDMSLLPD 365 (1115)
Q Consensus 288 ~~~~~~~~~l~~h~~~~~~~~~~s~~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~~~~-~~~~~v~~s~~~~ 365 (1115)
.+ .| | ..++...+ ...|+-. .+.|..-|..+|+.+.++.... ++..-..+++...
T Consensus 212 --------~~-~~---------P----~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~q 268 (619)
T 3s94_A 212 --------SL-PH---------P----FALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQ 268 (619)
T ss_dssp ----------------------C----CCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGS
T ss_pred --------CC-CC---------c----eEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccC
Confidence 00 00 1 12333332 3444432 3678888888887665553321 1111111222111
Q ss_pred ccc-----cc---cceEEEEecCCCC----c------cceeeeeec-cccceEEeccCcEEEEecccc------c-ccCC
Q 001245 366 FAM-----ED---EFKTKIVTSSKKD----K------AQSSFGFFQ-RSRNAIMGAADAVRRVAAKGG------F-GDDN 419 (1115)
Q Consensus 366 ~~~-----~~---~~~~~~~~~~~~~----~------~~~~v~f~~-~~~~~~~Gs~d~v~~~~~~g~------l-~~h~ 419 (1115)
... .. -....+....... . ......+.. ....++......++++..... + ....
T Consensus 269 p~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l 348 (619)
T 3s94_A 269 PNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDI 348 (619)
T ss_dssp CCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCC
T ss_pred CCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEecccc
Confidence 000 00 0001111110000 0 000001111 111233344455666654211 1 1123
Q ss_pred CceEEEEEcC-CCcE-EEEeCCCeEEEEcCCCCeeEEee-cCCCcEEEEEec--CCEEEee-ecccEEEEEeCCCccccc
Q 001245 420 RRTEALTTSI-DGMI-WTGGANGLLLQWDPNGNRLQDFQ-YLPFAVQCLCTF--GSQIWVG-YMNGIVQVLDLEGNLLGG 493 (1115)
Q Consensus 420 ~~V~aVa~S~-Dg~l-aSGS~DgtIklWD~tG~~l~tl~-gH~~~V~sla~d--G~~LaSG-s~DGtIrlWD~~G~ll~~ 493 (1115)
..+.+|++.+ ++.| ++-...+.|..++++|....++. ........||.| ++.|+.+ +..+.|.+-+++|.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 4567788876 5666 55556789999999775444433 233456677754 5555544 567899999999876555
Q ss_pred ccc-ccCCEEEEEec
Q 001245 494 WVA-HSSPVIKMAVG 507 (1115)
Q Consensus 494 l~g-H~~~V~sva~d 507 (1115)
+.. .-....+|++|
T Consensus 429 l~~~~l~~P~~iavd 443 (619)
T 3s94_A 429 LISEDLEEPRAIVLD 443 (619)
T ss_dssp EECTTCCSEEEEEEE
T ss_pred EEECCCCCeeeEEEE
Confidence 442 23456778865
No 347
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=56.87 E-value=3.2e+02 Score=32.81 Aligned_cols=73 Identities=10% Similarity=0.119 Sum_probs=50.5
Q ss_pred CceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCC-CcE-EEEeCCCcEEEEe
Q 001245 192 SSVMCMVGDE-ASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSY-GDL-WSGSEGGGIKIWP 268 (1115)
Q Consensus 192 ~~V~~la~s~-dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpd-G~L-~SgS~DgtIrvWd 268 (1115)
..+.+|+|++ ++.+.|+-...+.|+.+++++.. ....+..--+....||+... +.| ++-+..++|.+-+
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------SQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc--------cEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 4577899998 46677777778999999998621 11122233356779999974 456 5666778999888
Q ss_pred CCCc
Q 001245 269 WEAI 272 (1115)
Q Consensus 269 l~t~ 272 (1115)
+++.
T Consensus 421 ~~G~ 424 (619)
T 3s94_A 421 LNGT 424 (619)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8653
No 348
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=54.33 E-value=1.2e+02 Score=35.12 Aligned_cols=67 Identities=12% Similarity=0.065 Sum_probs=45.0
Q ss_pred ceEEEEEcCCCcEEEEeCCCeEEEEcC-CCC------------eeEEeec------CCCcEEEEE--e---cCCEEEeee
Q 001245 421 RTEALTTSIDGMIWTGGANGLLLQWDP-NGN------------RLQDFQY------LPFAVQCLC--T---FGSQIWVGY 476 (1115)
Q Consensus 421 ~V~aVa~S~Dg~laSGS~DgtIklWD~-tG~------------~l~tl~g------H~~~V~sla--~---dG~~LaSGs 476 (1115)
.+..+..||+|.+++-..+.+|.+-.+ .+. ..+++.- ...+|..+. | .|..|++=.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 345577788887655566777777766 231 1122322 245677776 2 578999999
Q ss_pred cccEEEEEeCC
Q 001245 477 MNGIVQVLDLE 487 (1115)
Q Consensus 477 ~DGtIrlWD~~ 487 (1115)
.|++||+||+.
T Consensus 147 sD~~Ir~yDl~ 157 (452)
T 3pbp_A 147 EDDTITMFDIL 157 (452)
T ss_dssp TTSCEEEEETT
T ss_pred cCCEEEEEEcc
Confidence 99999999986
No 349
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=54.14 E-value=43 Score=37.77 Aligned_cols=72 Identities=14% Similarity=0.020 Sum_probs=47.7
Q ss_pred CCceEEEEEcCCCCEEEEEe---CC------------CeEEEEECCCCCCCCCCCCcceEEeecCCCCEEEEEEeCCCc-
Q 001245 191 VSSVMCMVGDEASGVVWSGH---RD------------GRIMCWKMNARLLDSDDGFGEVLSWQAHRGPVLSLCISSYGD- 254 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS---~D------------gtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~V~sVafSpdG~- 254 (1115)
....+.++++++|+..+|.. .| ..-++|.++.+ .+..+...-..-+.|+|||||+
T Consensus 164 ~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---------~~~~~~~~l~~pNGia~spDg~~ 234 (355)
T 3sre_A 164 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---------DVRVVAEGFDFANGINISPDGKY 234 (355)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---------CCEEEEEEESSEEEEEECTTSSE
T ss_pred CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC---------eEEEeecCCcccCcceECCCCCE
Confidence 34678899999999888765 12 23455555432 1222322334568999999997
Q ss_pred E-EEEeCCCcEEEEeCCC
Q 001245 255 L-WSGSEGGGIKIWPWEA 271 (1115)
Q Consensus 255 L-~SgS~DgtIrvWdl~t 271 (1115)
| ++-+..++|..++++.
T Consensus 235 lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEGGGTEEEEEEECT
T ss_pred EEEEeCCCCeEEEEEECC
Confidence 5 4666788999999863
No 350
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=53.17 E-value=2.3e+02 Score=30.06 Aligned_cols=112 Identities=12% Similarity=0.060 Sum_probs=65.8
Q ss_pred eeEEEEEe--CCeEEEeC--CCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeeccCCceEEEEEcCCCCEEEEE
Q 001245 134 FLRTIVCT--EEQLWAGG--ENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVKGVSSVMCMVGDEASGVVWSG 209 (1115)
Q Consensus 134 ~l~~l~~~--~~~l~ag~--D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~G~~~V~~la~s~dg~~LaSG 209 (1115)
.+.-|+.. ++.||+-. ++.|..-|+. +...+. .|+ .|..-.-.|++.++|.++++-
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~---------------i~l----~g~~D~EGIa~~~~g~~~vs~ 87 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT---------------IPL----DFVKDLETIEYIGDNQFVISD 87 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE---------------EEC----SSCSSEEEEEECSTTEEEEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE---------------Eec----CCCCChHHeEEeCCCEEEEEE
Confidence 35556665 67899843 4456666665 444332 111 111223457778888877776
Q ss_pred eCCCeEEEEECCCCCCCCCCCCcceE--Eee----cCCCCEEEEEEeCCCc-EEEEeCCCcEEEEeCC
Q 001245 210 HRDGRIMCWKMNARLLDSDDGFGEVL--SWQ----AHRGPVLSLCISSYGD-LWSGSEGGGIKIWPWE 270 (1115)
Q Consensus 210 S~DgtIrlWdl~~~~~~~~~~~~~~~--~l~----GH~~~V~sVafSpdG~-L~SgS~DgtIrvWdl~ 270 (1115)
-.++.+.+.++.... . ..... .+. .+......||++|.++ |+.+.+....+||.++
T Consensus 88 E~~~~l~~~~v~~~~----~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 88 ERDYAIYVISLTPNS----E-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp TTTTEEEEEEECTTC----C-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCCcEEEEEcCCCC----e-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 677888888876421 0 01111 111 1244578999999985 8877776666777764
No 351
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=52.08 E-value=2.7e+02 Score=30.55 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.3
Q ss_pred CEEEEEEeCCCcEEEEeCCCcEEEEe
Q 001245 243 PVLSLCISSYGDLWSGSEGGGIKIWP 268 (1115)
Q Consensus 243 ~V~sVafSpdG~L~SgS~DgtIrvWd 268 (1115)
.-..|+|.|+|+|+-+..++.|++++
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 45799999999987777789999998
No 352
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=45.88 E-value=46 Score=35.23 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=40.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeecCCCC--------EEEEEEeCCCcEEEEeCCCcE
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQAHRGP--------VLSLCISSYGDLWSGSEGGGI 264 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~GH~~~--------V~sVafSpdG~L~SgS~DgtI 264 (1115)
.+.+++|+|+|.+-+- .+|. +|......+ ....|.+-... -.++.|.|+|.|+.+ .||.|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~-------~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~i 109 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK--IYKGTPPTH-------DNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKL 109 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE--EEEESCCCS-------TTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEE
T ss_pred cceeEEECCCccEEEE--eCCe--EEEECCCCC-------CcccccccccEecccccccceEEEECCCCCEEEe-CCCEE
Confidence 5668999998875555 6775 555443111 01122221112 368999999998766 56999
Q ss_pred EEEeCC
Q 001245 265 KIWPWE 270 (1115)
Q Consensus 265 rvWdl~ 270 (1115)
.-|+.-
T Consensus 110 yr~~pP 115 (236)
T 1tl2_A 110 YKASPP 115 (236)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 877753
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.21 E-value=68 Score=41.04 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCC
Q 001245 191 VSSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLL 225 (1115)
Q Consensus 191 ~~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~ 225 (1115)
...+.+++..++...|+|=+.|+++|+|++.++.|
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 44677888888889999999999999999998654
No 354
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=41.05 E-value=5e+02 Score=30.41 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=42.0
Q ss_pred ceEEEEEcC-CCcEE-EEeCCCeEEEEcCC--------CCe-----------eEEe-e-cCCCcEEEEE--ecCCEEEee
Q 001245 421 RTEALTTSI-DGMIW-TGGANGLLLQWDPN--------GNR-----------LQDF-Q-YLPFAVQCLC--TFGSQIWVG 475 (1115)
Q Consensus 421 ~V~aVa~S~-Dg~la-SGS~DgtIklWD~t--------G~~-----------l~tl-~-gH~~~V~sla--~dG~~LaSG 475 (1115)
....+++.| ++.|+ +-..++.|..+|+. |.. +..+ . +...+-..|+ ++|++|+.+
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva 327 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG 327 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence 345677888 56665 55567889999974 333 2222 1 1223345666 789976666
Q ss_pred e-cccEEEEEeCCC
Q 001245 476 Y-MNGIVQVLDLEG 488 (1115)
Q Consensus 476 s-~DGtIrlWD~~G 488 (1115)
. ....|+.+|.++
T Consensus 328 D~~~h~I~kid~dg 341 (496)
T 3kya_A 328 VINNHYFMRSDYDE 341 (496)
T ss_dssp ETTTTEEEEEEEET
T ss_pred eCCCCEEEEEecCC
Confidence 4 567899977653
No 355
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=40.90 E-value=3.5e+02 Score=28.62 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=83.4
Q ss_pred CCeEEEEEeCCCCEEEeecC--CeEEEEEcCCccEEEEEecCC--ceeeEEeccCCCCccccccceEEEEecCCCCccce
Q 001245 312 SDIKNLLSDHSRAKVWSAGF--LSFALWDARTRELLKVFNIDG--QIENRVDMSLLPDFAMEDEFKTKIVTSSKKDKAQS 387 (1115)
Q Consensus 312 ~~v~~las~~~~~~v~S~sd--~tI~lWD~~tg~ll~tl~~~~--~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1115)
.++..++.++++.++|++.+ ..|...|+. |+.++.+.-.+ ..+ .++..+.... .+..... .
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~E-GIa~~~~g~~--------~vs~E~~-~---- 91 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLE-TIEYIGDNQF--------VISDERD-Y---- 91 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEE-EEEECSTTEE--------EEEETTT-T----
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChH-HeEEeCCCEE--------EEEECCC-C----
Confidence 45677888888888988764 467788887 88888764322 221 1122111111 1111000 0
Q ss_pred eeeeeccccceEEeccCcEEEEeccc-cc--ccCCCceEEEEEcCCC-cEEEEeCCCeEEEEcCCC----CeeEEeec--
Q 001245 388 SFGFFQRSRNAIMGAADAVRRVAAKG-GF--GDDNRRTEALTTSIDG-MIWTGGANGLLLQWDPNG----NRLQDFQY-- 457 (1115)
Q Consensus 388 ~v~f~~~~~~~~~Gs~d~v~~~~~~g-~l--~~h~~~V~aVa~S~Dg-~laSGS~DgtIklWD~tG----~~l~tl~g-- 457 (1115)
.+.... ......+....... .+ .......+.|++++++ +|+++.+.....||..+| ..++.+..
T Consensus 92 ~l~~~~------v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 92 AIYVIS------LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EEEEEE------ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred cEEEEE------cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 000000 01111111111110 01 1233457899999987 587777755555554433 23333211
Q ss_pred -----CCCcEEEEEe---cCCEEEeeecccEEEEEeCCCccccc
Q 001245 458 -----LPFAVQCLCT---FGSQIWVGYMNGIVQVLDLEGNLLGG 493 (1115)
Q Consensus 458 -----H~~~V~sla~---dG~~LaSGs~DGtIrlWD~~G~ll~~ 493 (1115)
+...+.+|+. .|.+++....+..+-..|.+|+.+..
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~ 209 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGE 209 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEE
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEE
Confidence 2223456663 47778888888999999999875443
No 356
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=40.52 E-value=3.5e+02 Score=29.97 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=40.4
Q ss_pred cCCCcEEEEeCCCeEEEEcC-CCCeeEEeecCCC-------cEEEEE-------ecCCEEEeeecccEEEEEeCCC
Q 001245 428 SIDGMIWTGGANGLLLQWDP-NGNRLQDFQYLPF-------AVQCLC-------TFGSQIWVGYMNGIVQVLDLEG 488 (1115)
Q Consensus 428 S~Dg~laSGS~DgtIklWD~-tG~~l~tl~gH~~-------~V~sla-------~dG~~LaSGs~DGtIrlWD~~G 488 (1115)
+.+|.+++|+.++++.--|+ +|+.+-++..... ...|-. ..+..|+.|..+.+|.+-+.+|
T Consensus 109 ~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~~sG 184 (339)
T 2be1_A 109 VEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDG 184 (339)
T ss_dssp -CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECCTTS
T ss_pred ccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEECCCC
Confidence 36778999999999999999 8999988864321 111111 1246788887777777755444
No 357
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=39.94 E-value=2.2e+02 Score=31.76 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=45.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe----ecCCCCEEEEEEeCC----CcEE---EEeC
Q 001245 192 SSVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW----QAHRGPVLSLCISSY----GDLW---SGSE 260 (1115)
Q Consensus 192 ~~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l----~GH~~~V~sVafSpd----G~L~---SgS~ 260 (1115)
.....|+|.|+|.++++--..|+|++++.+++.. ..+..+ ..-.+....|+|+|+ +.|+ |...
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE------eeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3567899999999888766599999998654221 111111 223556899999995 6664 2234
Q ss_pred CCcEEEEeCC
Q 001245 261 GGGIKIWPWE 270 (1115)
Q Consensus 261 DgtIrvWdl~ 270 (1115)
++.|--|.+.
T Consensus 106 ~~~v~R~~~~ 115 (347)
T 3das_A 106 DNRIVRMLYD 115 (347)
T ss_dssp SEEEEEEEBC
T ss_pred CCEEEEEEeC
Confidence 4455555554
No 358
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=38.59 E-value=42 Score=35.55 Aligned_cols=69 Identities=9% Similarity=-0.076 Sum_probs=43.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEe-ecCCCCEEEEEEeCCCcEEEEeCCCcEEEEe
Q 001245 195 MCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSW-QAHRGPVLSLCISSYGDLWSGSEGGGIKIWP 268 (1115)
Q Consensus 195 ~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l-~GH~~~V~sVafSpdG~L~SgS~DgtIrvWd 268 (1115)
.++.|+++|.+.++ .||.|.-|+--+...+ +=....... ++-=..+..|.|.|+|.|+... |+.+.-+.
T Consensus 91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~ 160 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTD--NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKAL 160 (236)
T ss_dssp SEEEECTTSCEEEE--ETTEEEEESCCCSTTC--CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEEC
T ss_pred eEEEECCCCCEEEe--CCCEEEEeCCCcCCCC--ceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecC
Confidence 57999999998888 6799988876321110 000000011 1011357999999999998888 88764343
No 359
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=37.84 E-value=4.8e+02 Score=29.27 Aligned_cols=68 Identities=9% Similarity=0.173 Sum_probs=40.2
Q ss_pred eEEEEcCCC--CeeEEeecCCC----cEEEEE--ecCCEEEeee-------cccEEEEEeCCCccccccccccCCEEEEE
Q 001245 441 LLLQWDPNG--NRLQDFQYLPF----AVQCLC--TFGSQIWVGY-------MNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (1115)
Q Consensus 441 tIklWD~tG--~~l~tl~gH~~----~V~sla--~dG~~LaSGs-------~DGtIrlWD~~G~ll~~l~gH~~~V~sva 505 (1115)
.|.-|++.| .+.+.|..|.. .|.... ++.++++..+ -.|.++|+..+-+.-+.+.||.+.-.++.
T Consensus 127 aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~ 206 (365)
T 2xzh_A 127 AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK 206 (365)
T ss_dssp EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEEC
T ss_pred cEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEe
Confidence 455555532 44444444432 343333 3455444322 35889999999778889999987665555
Q ss_pred ecC
Q 001245 506 VGA 508 (1115)
Q Consensus 506 ~dg 508 (1115)
.+|
T Consensus 207 ~~g 209 (365)
T 2xzh_A 207 MEG 209 (365)
T ss_dssp CTT
T ss_pred cCC
Confidence 554
No 360
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=37.34 E-value=1.2e+02 Score=35.08 Aligned_cols=121 Identities=21% Similarity=0.167 Sum_probs=66.9
Q ss_pred EEEEeCCeEEE-eCCCCEEEEeCCCCcccccccccccccCCCCCCCCCceeeec---c--CCceEEEEEcCC---CCEEE
Q 001245 137 TIVCTEEQLWA-GGENGLRVWNLKELYDESESDSVSVSKSKGEDGTAPFKESVK---G--VSSVMCMVGDEA---SGVVW 207 (1115)
Q Consensus 137 ~l~~~~~~l~a-g~D~tvrvWdl~tg~~~~~~~~~~~~~~~~d~~~~~~~~s~~---G--~~~V~~la~s~d---g~~La 207 (1115)
.+....+.++| .++.+|.|=.+-.+..... .-++ +....++...+. + ..+|..+.|-|- +..|+
T Consensus 71 lvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~----~~~~---~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 71 VISSTSGDLLCLFNDNEIFVMEVPWGYSNVE----DVSI---QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp EEECTTSSEEEEECSSEEEEEECCTTCSCCC----CHHH---HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred EEECCCCCEEEEecCCeEEEEEecCccccCc----cccc---ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence 33444666666 6788999988774432210 0000 000001111111 0 357999999884 67899
Q ss_pred EEeCCCeEEEEECCCCCCCCCCCCc---ceEEeecCCCCEEEEEEeCCCc-EEEEe--CCCcEE
Q 001245 208 SGHRDGRIMCWKMNARLLDSDDGFG---EVLSWQAHRGPVLSLCISSYGD-LWSGS--EGGGIK 265 (1115)
Q Consensus 208 SGS~DgtIrlWdl~~~~~~~~~~~~---~~~~l~GH~~~V~sVafSpdG~-L~SgS--~DgtIr 265 (1115)
.=-.|++||+||+....- ....++ ....+..+..-|.+++|.++|- |+..+ .+|-|-
T Consensus 144 VLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred EEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 999999999999985210 000000 0001122335788999999774 66544 667664
No 361
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=36.94 E-value=2.1e+02 Score=32.95 Aligned_cols=58 Identities=7% Similarity=0.115 Sum_probs=36.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCCCCCCCCCcceEEeec------CCCCEEEEEEeC----CCcEE
Q 001245 193 SVMCMVGDEASGVVWSGHRDGRIMCWKMNARLLDSDDGFGEVLSWQA------HRGPVLSLCISS----YGDLW 256 (1115)
Q Consensus 193 ~V~~la~s~dg~~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~~l~G------H~~~V~sVafSp----dG~L~ 256 (1115)
....|+|+|+|+++++-...+.|++++..++.. ..+..+.. -.+....|+|+| ++.|+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE------eEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 456899999999887754445788887653211 11222211 245678999999 56664
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.69 E-value=76 Score=40.59 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=28.2
Q ss_pred CeEEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEE
Q 001245 313 DIKNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVF 348 (1115)
Q Consensus 313 ~v~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl 348 (1115)
.+.+++..++...+++.. |+++|+|++.+|+++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 355666666667777754 899999999999999875
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=32.19 E-value=67 Score=41.96 Aligned_cols=35 Identities=6% Similarity=0.018 Sum_probs=26.3
Q ss_pred EEEEEeCCCCEEEeec-CCeEEEEEcCCccEEEEEe
Q 001245 315 KNLLSDHSRAKVWSAG-FLSFALWDARTRELLKVFN 349 (1115)
Q Consensus 315 ~~las~~~~~~v~S~s-d~tI~lWD~~tg~ll~tl~ 349 (1115)
.+++...+...+++.. |+++|+||+.+|+|+.+..
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3444555566777754 8999999999999998863
No 364
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=28.83 E-value=1.9e+02 Score=31.99 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCc-EEEEeCCCeEEEEcCCCCeeEE---e----ecCCCcEEEEE--ec---CCEEEeeec--------cc
Q 001245 421 RTEALTTSIDGM-IWTGGANGLLLQWDPNGNRLQD---F----QYLPFAVQCLC--TF---GSQIWVGYM--------NG 479 (1115)
Q Consensus 421 ~V~aVa~S~Dg~-laSGS~DgtIklWD~tG~~l~t---l----~gH~~~V~sla--~d---G~~LaSGs~--------DG 479 (1115)
....+++.|||. ++.+...|.|++++.+|..... + .........|+ |+ +.+|+.... ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467899999999 9888889999999876643221 1 11233456777 43 566666643 23
Q ss_pred EEEEEeCC
Q 001245 480 IVQVLDLE 487 (1115)
Q Consensus 480 tIrlWD~~ 487 (1115)
.|..|+.+
T Consensus 99 ~v~r~~~~ 106 (353)
T 2g8s_A 99 AVGYGRLS 106 (353)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 56666654
No 365
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=28.41 E-value=5.3e+02 Score=27.69 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=50.3
Q ss_pred CeEEEEcCCCCeeEEeecCCCcEEEEEecCCEEEeee----cccEEEEEeCCCccccccccccCCEEEEEecCCEEEeec
Q 001245 440 GLLLQWDPNGNRLQDFQYLPFAVQCLCTFGSQIWVGY----MNGIVQVLDLEGNLLGGWVAHSSPVIKMAVGAGYIFTLA 515 (1115)
Q Consensus 440 gtIklWD~tG~~l~tl~gH~~~V~sla~dG~~LaSGs----~DGtIrlWD~~G~ll~~l~gH~~~V~sva~dg~~laSgS 515 (1115)
..|+..+++|.....+.. .....++++|++|+=.. ....|..-+++|.-...+..|.. ..+.++|+.|+=.+
T Consensus 88 ~~Iy~i~~dg~~~~~l~~--~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDP--DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNN 163 (302)
T ss_dssp EEEEEEETTSCCCEEEEC--SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEEC
T ss_pred CeEEEEeCCCCcceEeec--CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEe
Confidence 467888886655444443 33446778998888654 46678888888766666665543 33457787776333
Q ss_pred C-CCceEEee
Q 001245 516 N-HGGIRGWN 524 (1115)
Q Consensus 516 ~-DgtIRlWd 524 (1115)
. ...|.+=+
T Consensus 164 ~g~~~Iy~~~ 173 (302)
T 3s25_A 164 PKNGQLYRYD 173 (302)
T ss_dssp TTTCCEEEEE
T ss_pred CCCceEEEEE
Confidence 3 44444433
No 366
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.08 E-value=7.2e+02 Score=28.98 Aligned_cols=68 Identities=9% Similarity=0.173 Sum_probs=41.2
Q ss_pred eEEEEcCCC--CeeEEeecCCC----cEEEEE--ecCCEEEeee-------cccEEEEEeCCCccccccccccCCEEEEE
Q 001245 441 LLLQWDPNG--NRLQDFQYLPF----AVQCLC--TFGSQIWVGY-------MNGIVQVLDLEGNLLGGWVAHSSPVIKMA 505 (1115)
Q Consensus 441 tIklWD~tG--~~l~tl~gH~~----~V~sla--~dG~~LaSGs-------~DGtIrlWD~~G~ll~~l~gH~~~V~sva 505 (1115)
.|.-|++.| .+.+.|.-|.. .|.... ++.++++..+ ..|.++|+..+-+.-+.+.||.+.-.++.
T Consensus 126 aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~ 205 (494)
T 1bpo_A 126 AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK 205 (494)
T ss_dssp EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEE
T ss_pred eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEe
Confidence 455555532 34444444432 343333 3455554222 35899999999778889999988776666
Q ss_pred ecC
Q 001245 506 VGA 508 (1115)
Q Consensus 506 ~dg 508 (1115)
.+|
T Consensus 206 ~~g 208 (494)
T 1bpo_A 206 MEG 208 (494)
T ss_dssp CTT
T ss_pred cCC
Confidence 655
No 367
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=24.41 E-value=15 Score=42.93 Aligned_cols=17 Identities=53% Similarity=1.099 Sum_probs=15.2
Q ss_pred CcCCcceEEEecccccc
Q 001245 758 ELSEADMVIFLGDFNYR 774 (1115)
Q Consensus 758 ~i~~~D~vfw~GDlNyR 774 (1115)
++.+++.||+=||||||
T Consensus 373 ~L~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 373 DLQKSNLVIFKGDLNYR 389 (471)
T ss_dssp HHTTCSEEEEEHHHHHH
T ss_pred HHhhCcEEEEecchhhh
Confidence 46788999999999999
No 368
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=24.39 E-value=5.1e+02 Score=29.86 Aligned_cols=58 Identities=7% Similarity=0.132 Sum_probs=34.8
Q ss_pred ceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCCCCCCCCcceE-Ee-e----cCCCCEEEEEEeCC
Q 001245 193 SVMCMVGDEASG-VVWSGHRDGRIMCWKMNARLLDSDDGFGEVL-SW-Q----AHRGPVLSLCISSY 252 (1115)
Q Consensus 193 ~V~~la~s~dg~-~LaSGS~DgtIrlWdl~~~~~~~~~~~~~~~-~l-~----GH~~~V~sVafSpd 252 (1115)
....|+|.|+|. .|+.+.+.|.|++++.++... ...+..+. .+ . +-.+....|+|.|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~--~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF--KEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC--SSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee--eeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456899999985 445557899999997653210 00111000 01 1 12457889999996
No 369
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=23.38 E-value=34 Score=38.32 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=37.5
Q ss_pred CCcEEEEeCCCeEEEEcC-CCCeeEEeecC-CCcEEEEE-e----cCCEEEee-ecccEEEEEeCC-C
Q 001245 430 DGMIWTGGANGLLLQWDP-NGNRLQDFQYL-PFAVQCLC-T----FGSQIWVG-YMNGIVQVLDLE-G 488 (1115)
Q Consensus 430 Dg~laSGS~DgtIklWD~-tG~~l~tl~gH-~~~V~sla-~----dG~~LaSG-s~DGtIrlWD~~-G 488 (1115)
++.++.++.||.|.-.|. +|+.+=++... ..++.... + +|..++.. +.||.|..+|.+ |
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G 77 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG 77 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence 346788899999999998 88877666543 12332222 1 23444443 578888888865 5
No 370
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=21.08 E-value=6.6e+02 Score=27.80 Aligned_cols=69 Identities=7% Similarity=0.060 Sum_probs=44.7
Q ss_pred CCceEEEEEcCCCcEEEEeC-CCeEEEEcC-CCCe--eEEe----ecCCCcEEEEEe--c---CCEEEeee---cccEEE
Q 001245 419 NRRTEALTTSIDGMIWTGGA-NGLLLQWDP-NGNR--LQDF----QYLPFAVQCLCT--F---GSQIWVGY---MNGIVQ 482 (1115)
Q Consensus 419 ~~~V~aVa~S~Dg~laSGS~-DgtIklWD~-tG~~--l~tl----~gH~~~V~sla~--d---G~~LaSGs---~DGtIr 482 (1115)
......+++.|||.++.... .|.|++++. +|+. +..+ .........|+. + +.+|+... .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34677899999999877777 899999987 4553 2222 123456778884 2 45566542 455666
Q ss_pred EEeCC
Q 001245 483 VLDLE 487 (1115)
Q Consensus 483 lWD~~ 487 (1115)
-|..+
T Consensus 111 R~~~~ 115 (347)
T 3das_A 111 RMLYD 115 (347)
T ss_dssp EEEBC
T ss_pred EEEeC
Confidence 66654
No 371
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=20.04 E-value=2.9e+02 Score=28.95 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=40.5
Q ss_pred CeEEEEcCCCCeeEE---eecCCCcEEEEEecCCEEEeeecc-----cEEEEEeCCC---ccccccccccCCEEEEEecC
Q 001245 440 GLLLQWDPNGNRLQD---FQYLPFAVQCLCTFGSQIWVGYMN-----GIVQVLDLEG---NLLGGWVAHSSPVIKMAVGA 508 (1115)
Q Consensus 440 gtIklWD~tG~~l~t---l~gH~~~V~sla~dG~~LaSGs~D-----GtIrlWD~~G---~ll~~l~gH~~~V~sva~dg 508 (1115)
..+..+|+....-.. +......-.++..++++++.|+.+ ..|.++|.+. ..+..+......-.++..++
T Consensus 175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 254 (301)
T 2vpj_A 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred ceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECC
Confidence 357788873322222 211111222333577877888754 4688999762 22332222222223344577
Q ss_pred CEEEeecCCC
Q 001245 509 GYIFTLANHG 518 (1115)
Q Consensus 509 ~~laSgS~Dg 518 (1115)
+.++.|+.++
T Consensus 255 ~i~v~GG~~~ 264 (301)
T 2vpj_A 255 RLYAIAGYDG 264 (301)
T ss_dssp EEEEECCBCS
T ss_pred EEEEEcCcCC
Confidence 7777777653
Done!