Citrus Sinensis ID: 001246

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110-----

MTMMTPPPLDQEEEEMLVPHSDIVEGPQPMEVVSQVEPASTVENQQVEDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYARYCYAS

ccccccccccccHHcccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEcccEEEEEEEEcccccccEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEEEEEEEEEcccccccccccccccccccccccEEEcccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEcccccccccccccEEEEEEEcccccHHHHHHHccccEEcccccccccccccccccEEEEEEccccccEEEEEEccEEEcccccEEccccEEEccccccccccccccccccccccccccEEEEEEEEEEccccccEEEEEEccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEcccccEEEccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHccEEEEEEEEccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEcccccccccccccccccccccHHHHccccccccEEEEEEEccccccccccEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHcccccccccEEEEEEEccEEEEEcccccccccccccccEEEEEEEcccccccccccEEEEEEEEEccccccccccccccccEEEEEEccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccHHHHcccccccccccccccEEEccccccccccccccccEEEEEEEcccc

cEEEccccccccHHHccccccccccccccccccccHHHHHcccccccccccccEEEEEEccHHHccccccccccEEEccccEEEEEEEccccccEEEEEEEcccccccccccEEEEEEEEEEEcccccccEEEEcEEEEEcccccccccccHccHHHHcccccccEEccEEEEEEEEEEEEccccEEcccccccccccEccccccHHHHHHHHHHHccHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHHccccEccHHHHHHccccccHHHccEcHHHHHHHHHHHHHHHHcccccccHHHHHHcEEEEEEEEEcccccEEEEEEEEccEEEEcccccEHHHHHHHHHccEEEcHHHcEEcccccEEcEEEEEEEcccccEEEEEEEcEEEEccccEEEEcccccEcccEEEcHHHEcccEccEccEEEEEEEEEEEEEccEEEccEEEEEEEEccccccccEEEEccEEEEccHHHHcHHHcccccccccccccccccccccEccccEEEEEEEEHccHHHHcccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHccccHHHEEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccHHHcccccEEEEEEccccccccccccccHHHHHHHHHccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccHHHHHHcccccccEEEEEEEEccHHHHHcccEEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHHcccccccccEEEEEEEccEEEEEcccccccccccccccEEEEEEccHHHccccccccEEEEEEEcccccccccHcccccccEEEEEEccccHHHHHHHHHHHccccHHHHHHEEEEEEEcccccccccccEEHHHHHcccccccccHcccccccccccccccHHHHcHHHHHHHEccc

mtmmtpppldqeeeemlvphsdivegpqpmevvsqvepastvenqqvedpptmkftwtienfsrlntkkhysdvfvvggykwrilifpkgnnvdhLSMYLdvadsgtlpygwsryaQFSLAVVNQIHSKYSIRKDTQHQfnaresdwgftsfmplgdlydpsrgylvndSVVVEAEVAVRKVLDYwsydskketgyvglknqgaTCYMNSLlqtlyhipyfrkavyhmpttendlpsgsipLALQSLFYKLQYNDTSVATKELtksfgwdtydsfMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDykstrkesfYDLQLDVKGCRDVYASFDKYVEVErlegdnkyhaeehglqdakkgvlfidfppvLQLQLKRFEYDFMRDAMVKINdryefplqldldrengkylspdadrsvRNLYTLHSVLVHsggvhgghyyafirptlsdqwykfddervTKEDVKRALEEqyggeeelpptnpgfnntpfkftkySNAYMLVYIREsdkdkiicnvdEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAkefgipiqLQRFWIWAKrqnhtyrpnrpllpqeeaQTVGQLREVSNKTHTAELRLFLevefgpdlhpiappdkskddILLFFklydpekgelrYVGRLFLKSSSKPIEILRKLnqmagfdpdeeielyeeikfepcvmcehldkrtsfrlsqiedgdiicfqksppleseqecrypdvpsfLEYVHNRQIVRfraldrpkedafclelskqhsYDEVVERVARKiglddpskirltphncysqqpkpqpikyrgvEHLSDMLVHYnqtsdilyyevldiplpelqglknlkvafhhatkdevvihnirlpkqstvgDVINELKTKVELSHPNAELRLLEVFYHKIYkifapnekienINDQYWTLRaeeipeeeknlgpndrlIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFlslgrpeylvdtdtvfnrfqrrdVYGAWEQYlglehsdnapkraysVNQVIYFYARYCYAS

mtmmtpppldqeeeEMLVPHSDIVEGPQPMEVVSQVEPAStvenqqvedpptmKFTWTIENfsrlntkkhysdVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLdywsydskketgyvGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEqyggeeelpptnpgfnnTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRirlkkeqeekedkrrykaqahlytiikvardedlAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPiappdkskddILLFFKLYDPEKGELRYVGRlflkssskpiEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFClelskqhsydeVVERVARKiglddpskirltphncysqqpkpQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDevvihnirlpkqstvgDVINELKTkvelshpnaeLRLLEVFYHKIYKifapnekienINDQYWTLRAEEIPeeeknlgpnDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAflslgrpeylVDTDTVFNRFQRRDVYGAWEQYLGlehsdnapkraySVNQVIYFYARYCYAS

MTMMTPPPLDQEEEEMLVPHSDIVEGPQPMEVVSQVEPASTVENQQVEDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSvvveaevavRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTlhsvlvhsggvhgghYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELpptnpgfnntpfkftKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLkkeqeekedkRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGfdpdeeielyeeikfepCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYARYCYAS

****************************************************MKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERV**************************NNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIR*************YKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTY*************************HTAELRLFLEVEFGPDLHPIA*****KDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQK********ECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDD**KIRLTPHNCY********IKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEEI********PNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYARYCY**

************************************************DPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKY*******SVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGG*****************FTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPL****ECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQ****PIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVE**HPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNA**********IYFYARYCYA*

MTMMTPPPLDQEEEEMLVPHSDIVEGPQPMEVVSQVEPASTVENQQVEDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKE*********YKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYARYCYAS

MT*******************************************Q***PPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYARYCYAS

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MTMMTPPPLDQEEEEMLVPHSDIVEGPQPMEVVSQVEPASTVENQQVEDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIxxxxxxxxxxxxxxxxxxxxxKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYARYCYAS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1115	2.2.26 [Sep-21-2011]
Q9FPT1		1116	Ubiquitin carboxyl-termin	yes	no	0.992	0.991	0.867	0.0
Q84WU2		1115	Ubiquitin carboxyl-termin	no	no	0.992	0.992	0.850	0.0
Q4VSI4		1103	Ubiquitin carboxyl-termin	yes	no	0.899	0.909	0.374	1e-174
Q6A4J8		1103	Ubiquitin carboxyl-termin	yes	no	0.899	0.909	0.373	1e-173
Q93009		1102	Ubiquitin carboxyl-termin	yes	no	0.899	0.910	0.371	1e-173
Q6U7I1		1101	Ubiquitin carboxyl-termin	yes	no	0.901	0.912	0.369	1e-171
Q9UTT1		1129	Ubiquitin carboxyl-termin	yes	no	0.913	0.902	0.362	1e-170
Q9VYQ8		1129	Ubiquitin carboxyl-termin	yes	no	0.884	0.873	0.356	1e-159
Q09879		1108	Probable ubiquitin carbox	no	no	0.889	0.895	0.349	1e-151
P50101		1230	Ubiquitin carboxyl-termin	yes	no	0.748	0.678	0.335	1e-130

>sp\|Q9FPT1\|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2	Back alignment and function desciption

 Score = 1994 bits (5166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 966/1113 (86%), Positives = 1035/1113 (92%), Gaps = 6/1113 (0%)

Query: 1    MTMMTPPPLDQ-EEEEMLVPHSDIVEGP-QPMEVVSQVEPASTVENQQVEDPPTMKFTWT 58
            MTMMTPPP+DQ E+EEMLVP+SD+V+GP QPMEV      ASTVENQ  EDPPT+KFTWT
Sbjct: 1    MTMMTPPPVDQPEDEEMLVPNSDLVDGPAQPMEVTQPETAASTVENQPAEDPPTLKFTWT 60

Query: 59   IENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQF 118
            I NFSR NT+KHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDV+D+ +LPYGWSRYAQF
Sbjct: 61   IPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYAQF 120

Query: 119  SLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVA 178
            SLAVVNQIH++Y++RK+TQHQFNARESDWGFTSFMPL +LYDPSRGYLVND+V+VEAEVA
Sbjct: 121  SLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVA 180

Query: 179  VRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSG 238
            VRKVLDYWSYDSKKETG+VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND P+ 
Sbjct: 181  VRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTA 240

Query: 239  SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT 298
            SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT
Sbjct: 241  SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT 300

Query: 299  VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLE 358
            VVEGTIQQLFEGHHMNYIECINVD+KSTRKESFYDLQLDVKGC+DVYASFDKYVEVERLE
Sbjct: 301  VVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE 360

Query: 359  GDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLD 418
            GDNKYHAE HGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRD MVKINDRYEFPL+LDLD
Sbjct: 361  GDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLD 420

Query: 419  RENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 478
            RE+GKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED
Sbjct: 421  REDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 480

Query: 479  VKRALEEQYGGEEELPPTNPGFNNT-PFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 537
            +KRALEEQYGGEEELP TNPGFNN  PFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA
Sbjct: 481  LKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 540

Query: 538  EHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFR 597
            EHLR+RLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDL EQIG+DIYFDLVDHDKVRSFR
Sbjct: 541  EHLRVRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSFR 600

Query: 598  VQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVS 657
            +QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL PQEE Q VGQ+RE S
Sbjct: 601  IQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREAS 660

Query: 658  NKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSK 717
            NK +TAEL+LFLEVE   DL PI PP+KSK+DILLFFKLYDPEK  L Y GRL +KSSSK
Sbjct: 661  NKANTAELKLFLEVEHL-DLRPIPPPEKSKEDILLFFKLYDPEKAVLSYAGRLMVKSSSK 719

Query: 718  PIEILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777
            P++I  KLN+M GF PDEEIEL+EEIKFEPCVMCEHLDK+TSFRL QIEDGDIICFQK P
Sbjct: 720  PMDITGKLNEMVGFAPDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQK-P 778

Query: 778  PLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKI 837
             +  E EC YP VPSFLEYV NRQ+VRFRAL++PKED F LELSKQH+YD+VVE+VA K+
Sbjct: 779  LVNKEIECLYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEKL 838

Query: 838  GLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQ 897
            GLDDPSK+RLT HNCYSQQPKPQPIKYRGV+HLSDMLVHYNQTSDILYYEVLDIPLPELQ
Sbjct: 839  GLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQ 898

Query: 898  GLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKI 957
            GLK LKVAFHHATK+EVVIHNIRLPKQSTVGDVINELKTKVELSHP+AELRLLEVFYHKI
Sbjct: 899  GLKTLKVAFHHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKI 958

Query: 958  YKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGE 1017
            YKIF   E+IENINDQYWTLRAEEIPEEEKN+GPNDRLI VYHF KE+ QNQ QVQNFGE
Sbjct: 959  YKIFPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQ-QVQNFGE 1017

Query: 1018 PFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRD 1077
            PFFLVIHEGETL E+K RIQ+KL V DE+F+KWKFAF+S+GRPEYL DTD V+NRFQRRD
Sbjct: 1018 PFFLVIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDTDVVYNRFQRRD 1077

Query: 1078 VYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYAR 1110
            VYGA+EQYLGLEH+D  PKRAY+ NQ  + Y +
Sbjct: 1078 VYGAFEQYLGLEHADTTPKRAYAANQNRHAYEK 1110

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp\|Q84WU2\|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1	Back alignment and function description

>sp\|Q4VSI4\|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1	Back alignment and function description

>sp\|Q6A4J8\|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1	Back alignment and function description

>sp\|Q93009\|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2	Back alignment and function description

>sp\|Q6U7I1\|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1	Back alignment and function description

>sp\|Q9UTT1\|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2	Back alignment and function description

>sp\|Q9VYQ8\|UBP7_DROME Ubiquitin carboxyl-terminal hydrolase 7 OS=Drosophila melanogaster GN=Usp7 PE=1 SV=1	Back alignment and function description

>sp\|Q09879\|UBP5_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp5 PE=3 SV=3	Back alignment and function description

>sp\|P50101\|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1115
255566265		1120	Ubiquitin carboxyl-terminal hydrolase, p	0.988	0.983	0.922	0.0
224138194		1117	predicted protein [Populus trichocarpa]	0.988	0.986	0.913	0.0
225439303		1117	PREDICTED: ubiquitin carboxyl-terminal h	0.989	0.987	0.900	0.0
296089314		1116	unnamed protein product [Vitis vinifera]	0.988	0.987	0.897	0.0
449437528		1110	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.980	0.984	0.895	0.0
224091501		1239	predicted protein [Populus trichocarpa]	0.988	0.889	0.825	0.0
297810771		1115	ubiquitin-specific protease 12 [Arabidop	0.992	0.992	0.872	0.0
359487017		1115	PREDICTED: ubiquitin carboxyl-terminal h	0.988	0.988	0.870	0.0
312282613		1115	unnamed protein product [Thellungiella h	0.992	0.992	0.870	0.0
30681531		1115	ubiquitin carboxyl-terminal hydrolase 12	0.992	0.992	0.867	0.0

>gi\|255566265\|ref\|XP_002524120.1\| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi\|223536688\|gb\|EEF38330.1\| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2114 bits (5478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1017/1103 (92%), Positives = 1064/1103 (96%), Gaps = 1/1103 (0%)

Query: 1    MTMMTPPPLDQEEEEMLVPHSDIVEGPQPMEVVSQVEPASTVENQQVEDPPTMKFTWTIE 60
            MTMMTPPPLDQE+EEMLVPHSD+VEGPQPMEV +QVEPASTVENQ VEDPP+MKFTWTIE
Sbjct: 1    MTMMTPPPLDQEDEEMLVPHSDLVEGPQPMEV-AQVEPASTVENQPVEDPPSMKFTWTIE 59

Query: 61   NFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQFSL 120
            NFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDV+DS TLPYGWSRYAQFSL
Sbjct: 60   NFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDSSTLPYGWSRYAQFSL 119

Query: 121  AVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSVVVEAEVAVR 180
            AVVNQIH+KYSIRKDTQHQFNARESDWGFTSFMPL DLYDPSRGYLVND+V+VEAEVAVR
Sbjct: 120  AVVNQIHNKYSIRKDTQHQFNARESDWGFTSFMPLSDLYDPSRGYLVNDTVIVEAEVAVR 179

Query: 181  KVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSI 240
            KVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND+P+GSI
Sbjct: 180  KVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPTGSI 239

Query: 241  PLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV 300
            PLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV
Sbjct: 240  PLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV 299

Query: 301  EGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGD 360
            EGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGD
Sbjct: 300  EGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGD 359

Query: 361  NKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRE 420
            NKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRD MVKINDRYEFPLQLDLDRE
Sbjct: 360  NKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRE 419

Query: 421  NGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVK 480
            NGKYLSP+ADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQW+KFDDERVTKED+K
Sbjct: 420  NGKYLSPEADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWFKFDDERVTKEDMK 479

Query: 481  RALEEQYGGEEELPPTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHL 540
            RALEEQYGGEEEL  TNPGFNN PFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHL
Sbjct: 480  RALEEQYGGEEELQQTNPGFNNAPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHL 539

Query: 541  RIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFRVQK 600
            RIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDL EQIGRDIYFDLVDHDKVR+FR+QK
Sbjct: 540  RIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGRDIYFDLVDHDKVRNFRIQK 599

Query: 601  QTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKT 660
            QT F  FKEE+AKEFGIP+Q QRFWIWAKRQNHTYRPNRPL PQEEAQ+VGQLRE SNK 
Sbjct: 600  QTPFNFFKEEVAKEFGIPVQFQRFWIWAKRQNHTYRPNRPLTPQEEAQSVGQLREASNKA 659

Query: 661  HTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIE 720
            H+AEL+LFLEVE G DL PIAPPDK+K+DILLFFKLY PEKGELRY+GRLF+KSS KPIE
Sbjct: 660  HSAELKLFLEVELGLDLRPIAPPDKTKEDILLFFKLYVPEKGELRYIGRLFVKSSGKPIE 719

Query: 721  ILRKLNQMAGFDPDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLE 780
            IL KLN+MAGF  DEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLE
Sbjct: 720  ILAKLNEMAGFATDEEIELYEEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLE 779

Query: 781  SEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKIGLD 840
             E++C+YPDVPSFLEYVHNRQ+V FR+L++PKED FCLELSK H+YD+VVE+VA++IGLD
Sbjct: 780  VEEDCKYPDVPSFLEYVHNRQVVHFRSLEKPKEDDFCLELSKLHTYDDVVEKVAQQIGLD 839

Query: 841  DPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLK 900
            DPSKIRLT HNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLK
Sbjct: 840  DPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLK 899

Query: 901  NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKIYKI 960
            NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELK KVELSHPNAELRLLEVFYHKIYKI
Sbjct: 900  NLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKAKVELSHPNAELRLLEVFYHKIYKI 959

Query: 961  FAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFF 1020
            F PNEKIENINDQYWTLRAEE+PEEEKNLGP+DRLIHVYHF KE+AQNQ+QVQNFGEPFF
Sbjct: 960  FPPNEKIENINDQYWTLRAEEVPEEEKNLGPHDRLIHVYHFAKETAQNQLQVQNFGEPFF 1019

Query: 1021 LVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRDVYG 1080
            LVIHEGETL++VK RIQ KLQV DEEF+KWKFAFLSLGRPEYL D+D VF RFQRRDVYG
Sbjct: 1020 LVIHEGETLSDVKVRIQNKLQVPDEEFAKWKFAFLSLGRPEYLQDSDIVFTRFQRRDVYG 1079

Query: 1081 AWEQYLGLEHSDNAPKRAYSVNQ 1103
            AWEQYLGLEHSDN PKR+Y+VNQ
Sbjct: 1080 AWEQYLGLEHSDNTPKRSYAVNQ 1102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224138194\|ref\|XP_002322753.1\| predicted protein [Populus trichocarpa] gi\|222867383\|gb\|EEF04514.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225439303\|ref\|XP_002267555.1\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296089314\|emb\|CBI39086.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449437528\|ref\|XP_004136544.1\| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 12-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224091501\|ref\|XP_002309275.1\| predicted protein [Populus trichocarpa] gi\|222855251\|gb\|EEE92798.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297810771\|ref\|XP_002873269.1\| ubiquitin-specific protease 12 [Arabidopsis lyrata subsp. lyrata] gi\|297319106\|gb\|EFH49528.1\| ubiquitin-specific protease 12 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|359487017\|ref\|XP_002263912.2\| PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera] gi\|296084432\|emb\|CBI24991.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|312282613\|dbj\|BAJ34172.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|30681531\|ref\|NP_850783.1\| ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gi\|13430572\|gb\|AAK25908.1\|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gi\|23296847\|gb\|AAN13185.1\| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gi\|332003657\|gb\|AED91040.1\| ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1115
TAIR\|locus:2144118		1116	UBP12 "ubiquitin-specific prot	0.992	0.991	0.813	0.0
TAIR\|locus:2081501		1115	UBP13 "ubiquitin-specific prot	0.992	0.992	0.797	0.0
DICTYBASE\|DDB_G0276443		1306	usp7 "putative ubiquitin carbo	0.390	0.333	0.489	2.4e-171
UNIPROTKB\|F1N556		1086	USP7 "Ubiquitin carboxyl-termi	0.484	0.497	0.408	3.6e-163
RGD\|1306915		1103	Usp7 "ubiquitin specific pepti	0.495	0.501	0.403	5.8e-163
UNIPROTKB\|Q4VSI4		1103	Usp7 "Ubiquitin carboxyl-termi	0.495	0.501	0.403	5.8e-163
UNIPROTKB\|Q93009		1102	USP7 "Ubiquitin carboxyl-termi	0.495	0.501	0.403	2e-162
UNIPROTKB\|B7Z815		1086	USP7 "Ubiquitin carboxyl-termi	0.469	0.481	0.415	3.2e-162
UNIPROTKB\|F1PX83		1086	USP7 "Ubiquitin carboxyl-termi	0.456	0.468	0.422	4.1e-162
MGI\|MGI:2182061		1103	Usp7 "ubiquitin specific pepti	0.495	0.501	0.403	4.1e-162

TAIR\|locus:2144118 UBP12 "ubiquitin-specific protease 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4791 (1691.6 bits), Expect = 0., P = 0.
 Identities = 905/1113 (81%), Positives = 972/1113 (87%)

Query:     1 MTMMTPPPLDQ-EEEEMLVPHSDIVEGP-QPMEVVSQVEPASTVENQQVEDPPTMKFTWT 58
             MTMMTPPP+DQ E+EEMLVP+SD+V+GP QPMEV      ASTVENQ  EDPPT+KFTWT
Sbjct:     1 MTMMTPPPVDQPEDEEMLVPNSDLVDGPAQPMEVTQPETAASTVENQPAEDPPTLKFTWT 60

Query:    59 IENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGTLPYGWSRYAQF 118
             I NFSR NT+KHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDV+D+ +LPYGWSRYAQF
Sbjct:    61 IPNFSRQNTRKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVSDAASLPYGWSRYAQF 120

Query:   119 SLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVNDSXXXXXXXX 178
             SLAVVNQIH++Y++RK+TQHQFNARESDWGFTSFMPL +LYDPSRGYLVND+        
Sbjct:   121 SLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVA 180

Query:   179 XRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSG 238
              RKVLDYWSYDSKKETG+VGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND P+ 
Sbjct:   181 VRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTA 240

Query:   239 SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT 298
             SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT
Sbjct:   241 SIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGT 300

Query:   299 VVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLE 358
             VVEGTIQQLFEGHHMNYIECINVD+KSTRKESFYDLQLDVKGC+DVYASFDKYVEVERLE
Sbjct:   301 VVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERLE 360

Query:   359 GDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLD 418
             GDNKYHAE HGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRD MVKINDRYEFPL+LDLD
Sbjct:   361 GDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLD 420

Query:   419 RENGKYLSPDADRSVRNLYTXXXXXXXXXXXXXXXYYAFIRPTLSDQWYKFDDERVTKED 478
             RE+GKYLSPDADRSVRNLYT               YYAFIRPTLSDQWYKFDDERVTKED
Sbjct:   421 REDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKED 480

Query:   479 VKRALEEQYGGEEELXXXXXXXXXXX-XXXXKYSNAYMLVYIRESDKDKIICNVDEKDIA 537
             +KRALEEQYGGEEEL                KYSNAYMLVYIRESDKDKIICNVDEKDIA
Sbjct:   481 LKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA 540

Query:   538 EHLRIRLXXXXXXXXXXRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVDHDKVRSFR 597
             EHLR+RL          RRYKAQAHLYTIIKVARDEDL EQIG+DIYFDLVDHDKVRSFR
Sbjct:   541 EHLRVRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSFR 600

Query:   598 VQKQTSFMAFKEEIAKEFGIPIQLQRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVS 657
             +QKQT F  FKEE+AKEFG+P+QLQRFWIWAKRQNHTYRPNRPL PQEE Q VGQ+RE S
Sbjct:   601 IQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREAS 660

Query:   658 NKTHTAELRLFLEVEFGPDLHPIAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSK 717
             NK +TAEL+LFLEVE   DL PI PP+KSK+DILLFFKLYDPEK  L Y GRL +KSSSK
Sbjct:   661 NKANTAELKLFLEVEH-LDLRPIPPPEKSKEDILLFFKLYDPEKAVLSYAGRLMVKSSSK 719

Query:   718 PIEILRKLNQMAGXXXXXXXXXXXXXXXXXCVMCEHLDKRTSFRLSQIEDGDIICFQKSP 777
             P++I  KLN+M G                 CVMCEHLDK+TSFRL QIEDGDIICFQK P
Sbjct:   720 PMDITGKLNEMVGFAPDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQK-P 778

Query:   778 PLESEQECRYPDVPSFLEYVHNRQIVRFRALDRPKEDAFCLELSKQHSYDEVVERVARKI 837
              +  E EC YP VPSFLEYV NRQ+VRFRAL++PKED F LELSKQH+YD+VVE+VA K+
Sbjct:   779 LVNKEIECLYPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEKL 838

Query:   838 GLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQ 897
             GLDDPSK+RLT HNCYSQQPKPQPIKYRGV+HLSDMLVHYNQTSDILYYEVLDIPLPELQ
Sbjct:   839 GLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQ 898

Query:   898 GLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHPNAELRLLEVFYHKI 957
             GLK LKVAFHHATK+EVVIHNIRLPKQSTVGDVINELKTKVELSHP+AELRLLEVFYHKI
Sbjct:   899 GLKTLKVAFHHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKI 958

Query:   958 YKIFAPNEKIENINDQYWTLRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGE 1017
             YKIF   E+IENINDQYWTLRAEEIPEEEKN+GPNDRLI VYHF KE+ QNQ QVQNFGE
Sbjct:   959 YKIFPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQ-QVQNFGE 1017

Query:  1018 PFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLSLGRPEYLVDTDTVFNRFQRRD 1077
             PFFLVIHEGETL E+K RIQ+KL V DE+F+KWKFAF+S+GRPEYL DTD V+NRFQRRD
Sbjct:  1018 PFFLVIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDTDVVYNRFQRRD 1077

Query:  1078 VYGAWEQYLGLEHSDNAPKRAYSVNQVIYFYAR 1110
             VYGA+EQYLGLEH+D  PKRAY+ NQ  + Y +
Sbjct:  1078 VYGAFEQYLGLEHADTTPKRAYAANQNRHAYEK 1110

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR\|locus:2081501 UBP13 "ubiquitin-specific protease 13" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276443 usp7 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N556 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1306915 Usp7 "ubiquitin specific peptidase 7 (herpes virus-associated)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4VSI4 Usp7 "Ubiquitin carboxyl-terminal hydrolase 7" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93009 USP7 "Ubiquitin carboxyl-terminal hydrolase 7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|B7Z815 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PX83 USP7 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2182061 Usp7 "ubiquitin specific peptidase 7" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VYQ8	UBP7_DROME	3, ., 4, ., 1, 9, ., 1, 2	0.3566	0.8843	0.8733	yes	no
Q6A4J8	UBP7_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.3735	0.8995	0.9093	yes	no
Q6U7I1	UBP7_CHICK	3, ., 4, ., 1, 9, ., 1, 2	0.3691	0.9013	0.9128	yes	no
Q9UTT1	UBP21_SCHPO	3, ., 4, ., 1, 9, ., 1, 2	0.3621	0.9139	0.9025	yes	no
Q9FPT1	UBP12_ARATH	3, ., 4, ., 1, 9, ., 1, 2	0.8679	0.9928	0.9919	yes	no
Q84WU2	UBP13_ARATH	3, ., 4, ., 1, 9, ., 1, 2	0.8507	0.9928	0.9928	no	no
Q93009	UBP7_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.3716	0.8995	0.9101	yes	no
Q4VSI4	UBP7_RAT	3, ., 4, ., 1, 9, ., 1, 2	0.3745	0.8995	0.9093	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.998
3rd Layer	3.4.19.12	0.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVI.2030.1	hypothetical protein (1117 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1115
COG5077		1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	0.0
cd02659		334	cd02659, peptidase_C19C, A subfamily of Peptidase	1e-164
pfam00443		313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	6e-72
cd02257		255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	2e-59
cd02668		324	cd02668, Peptidase_C19L, A subfamily of Peptidase	9e-52
cd02661		304	cd02661, Peptidase_C19E, A subfamily of Peptidase	3e-43
cd00121		126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	6e-41
cd02663		300	cd02663, Peptidase_C19G, A subfamily of Peptidase	1e-36
cd02660		328	cd02660, Peptidase_C19D, A subfamily of Peptidase	9e-34
cd02674		230	cd02674, Peptidase_C19R, A subfamily of peptidase	1e-32
cd02657		305	cd02657, Peptidase_C19A, A subfamily of Peptidase	1e-30
cd02664		327	cd02664, Peptidase_C19H, A subfamily of Peptidase	5e-30
cd03775		134	cd03775, MATH_Ubp21p, Ubiquitin-specific protease	1e-27
cd02667		279	cd02667, Peptidase_C19K, A subfamily of Peptidase	3e-27
cd02671		332	cd02671, Peptidase_C19O, A subfamily of Peptidase	4e-25
pfam13423		296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	8e-21
cd03772		137	cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui	2e-17
pfam00917		116	pfam00917, MATH, MATH domain	2e-17
smart00061		95	smart00061, MATH, meprin and TRAF homology	3e-17
COG5533		415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	2e-15
cd02665		228	cd02665, Peptidase_C19I, A subfamily of Peptidase	3e-15
COG5560		823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	1e-13
cd02662		240	cd02662, Peptidase_C19F, A subfamily of Peptidase	1e-13
cd02658		311	cd02658, Peptidase_C19B, A subfamily of Peptidase	5e-13
cd02666		343	cd02666, Peptidase_C19J, A subfamily of Peptidase	2e-09
cd03773		132	cd03773, MATH_TRIM37, Tripartite motif containing	1e-07
cd03774		139	cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP	7e-07
COG5560		823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	8e-06
pfam12436		35	pfam12436, USP7, Ubiquitin-specific protease 7	5e-05
COG5207		749	COG5207, UBP14, Isopeptidase T [Posttranslational	5e-04
cd00270		149	cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept	5e-04

>gnl\|CDD\|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

 Score =  649 bits (1676), Expect = 0.0
 Identities = 375/1064 (35%), Positives = 553/1064 (51%), Gaps = 61/1064 (5%)

Query: 46   QVEDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADS 105
             VE+   M FTW ++ +S L  KK  S  F VGG+ W+I++FP+GNN  ++S+YL+    
Sbjct: 32   DVEELLEMSFTWKVKRWSEL-AKKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQ 90

Query: 106  GTLPYGWSRY---AQFSLAVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPS 162
                 G   Y   AQF+  + N  +        + H+F+   +DWGFT+F+ L  L +PS
Sbjct: 91   ELEETGGKYYDCCAQFAFDISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPS 150

Query: 163  RG---YLVNDSVVVEAEVAVRK----VL--DYWSYDSKKETGYVGLKNQGATCYMNSLLQ 213
             G   +L   ++V+   V V K    VL   + +Y+SKKETGYVGL+NQGATCYMNSLLQ
Sbjct: 151  PGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQGATCYMNSLLQ 210

Query: 214  TLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYD 273
            +L+ I  FRK VY +PT ++     S+ LALQ LFY LQ  +  V T ELT+SFGWD+ D
Sbjct: 211  SLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDSDD 269

Query: 274  SFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYD 333
            SFMQHD+QE NRVL + LE  M+GTVVE  +  +F G   +YI+C+NV+Y+S R E F+D
Sbjct: 270  SFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWD 329

Query: 334  LQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRF 393
            +QL+VKG +++  SF +Y++VE L+GDN+Y+AE+HGLQDAKKGV+F   PPVL LQLKRF
Sbjct: 330  IQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRF 389

Query: 394  EYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADRS--VRNLYTLHSVLVHSGGVHG 451
            EYDF RD MVKINDRYEFPL++DL      +L  DAD+S     +Y L+ VLVHSG +H 
Sbjct: 390  EYDFERDMMVKINDRYEFPLEIDLL----PFLDRDADKSENSDAVYVLYGVLVHSGDLHE 445

Query: 452  GHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTKYS 511
            GHYYA ++P    +WYKFDD RVT+   K  LEE +GG+   P  +   +++  K  ++ 
Sbjct: 446  GHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDH--PYKDKIRDHSGIK--RFM 501

Query: 512  NAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVAR 571
            +AYMLVY+R+S  D ++  V   DI  H+   L +E ++ E + +   + HLY  +++  
Sbjct: 502  SAYMLVYLRKSMLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVRCKEIDEIHLYRGVRLYT 561

Query: 572  DEDLAEQIGRDIYFDLVDHDK---VRSFRVQKQTSFMAFKEEIAKEFGIPIQLQ-RFWIW 627
             +      G D Y D         +  F +++       +  IA+    P  L  R W  
Sbjct: 562  IDSFIHYHGFD-YPDFSSELNDSGLAQFVIKRGAKISDLRNNIAEHLNTPQSLYLREWTM 620

Query: 628  AKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHTAELRLFLE--VEFGPDLHPIAPPDK 685
             KR N T R +RP        T  +L  ++ +T   ELR +LE  +E             
Sbjct: 621  IKRHNKTVRVDRPC--NRVNITTRELVGMNTRT-GEELRSYLERIIEHNQLDSQRKVALT 677

Query: 686  SKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELYEEIKF 745
                I +F K +D     +   G L +    K   I   +        +  + LYEEIK 
Sbjct: 678  KDGVINIFVKYFDYTTQPISGFGGLHVNKFLKISSISPWIED--SISSNLPLTLYEEIKP 735

Query: 746  EPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRF 805
                M + +    +F  S+I  GDIICF+    +E +    Y       +++  R +V F
Sbjct: 736  G---MVDTIGDNITFIGSEIGTGDIICFEVPGAVEFDTSSAYDSALKLYDFLQGRVLVAF 792

Query: 806  RAL-DRPKEDAFCLELSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPK---PQP 861
            R   D  +E+ F   L     YD++   V+ K+ +  P  +R T       + +      
Sbjct: 793  RRFSDEYRENVFEFLLFIGDFYDDLCRNVSCKLHV-TPFYLRGTKSTELEDRIRRVVGSK 851

Query: 862  IKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKNLKVAFHHATKDEVVIHNIRL 921
              +   E LS       + + + +YEVLD+PL EL+  + +++ F       V +    +
Sbjct: 852  SIFLLKEALSSSSEF--RQAPVDFYEVLDVPLSELERKRLIRLCFLSNGYQHVYLAEFYV 909

Query: 922  PKQSTVGDVINELKTKVELSHPNAE-LRLLEVFYHKIYKIFAPNEKIENINDQYWTLRAE 980
             K  T  D ++ + TKV  +    + + + EV   +  +  +    I + N    TL  E
Sbjct: 910  EKDYTAVDHLHIVVTKVGCTDELKKSVLVYEVVNLRPVRGHSLKTLIIDDN-VRSTLYGE 968

Query: 981  EIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKL 1040
              P E++ L  N+  + V HF K+  +        G PF  VI   ET  + K R+  + 
Sbjct: 969  VFPLEQEQLTTNEMCVVVQHFFKDLIRTH------GIPFMFVIVPFETFLDTKVRLVARF 1022

Query: 1041 QVLDEEFSKWKFA------FLSLGRP-EYLVDTDTVFNRFQRRD 1077
                + FSK K           L  P  Y  D D +++  +R D
Sbjct: 1023 GYKYKLFSKIKLFVGKSYTDGELDWPMSYFNDEDILYDLIERLD 1066

Length = 1089

>gnl\|CDD\|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>gnl\|CDD\|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases	Back alignment and domain information

>gnl\|CDD\|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins	Back alignment and domain information

>gnl\|CDD\|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19	Back alignment and domain information

>gnl\|CDD\|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast	Back alignment and domain information

>gnl\|CDD\|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>gnl\|CDD\|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway	Back alignment and domain information

>gnl\|CDD\|216189 pfam00917, MATH, MATH domain	Back alignment and domain information

>gnl\|CDD\|214496 smart00061, MATH, meprin and TRAF homology	Back alignment and domain information

>gnl\|CDD\|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19	Back alignment and domain information

>gnl\|CDD\|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins	Back alignment and domain information

>gnl\|CDD\|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP	Back alignment and domain information

>gnl\|CDD\|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|204918 pfam12436, USP7, Ubiquitin-specific protease 7	Back alignment and domain information

>gnl\|CDD\|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1115
COG5077		1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	100.0
KOG1863		1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
cd02659		334	peptidase_C19C A subfamily of Peptidase C19. Pepti	100.0
cd02668		324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	100.0
PF12436		249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	100.0
KOG1865		545	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
cd02664		327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	100.0
cd02663		300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	100.0
cd02671		332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	100.0
KOG4598		1203	consensus Putative ubiquitin-specific protease [Po	100.0
cd02657		305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	100.0
cd02660		328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	100.0
cd02667		279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	100.0
PF14533		213	USP7_C2: Ubiquitin-specific protease C-terminal; P	100.0
cd02661		304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	100.0
KOG1866		944	consensus Ubiquitin carboxyl-terminal hydrolase [P	100.0
cd02658		311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	100.0
cd02669		440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	100.0
cd02662		240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	100.0
cd02665		228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	100.0
cd02666		343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	100.0
COG5560		823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	100.0
COG5533		415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	100.0
cd02674		230	Peptidase_C19R A subfamily of peptidase C19. Pepti	100.0
PF00443		269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	100.0
cd02673		245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	100.0
KOG1868		653	consensus Ubiquitin C-terminal hydrolase [Posttran	100.0
KOG0944		763	consensus Ubiquitin-specific protease UBP14 [Postt	100.0
cd02257		255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	100.0
KOG1867		492	consensus Ubiquitin-specific protease [Posttransla	100.0
cd02672		268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	100.0
KOG1873		877	consensus Ubiquitin-specific protease [Posttransla	100.0
COG5207		749	UBP14 Isopeptidase T [Posttranslational modificati	100.0
KOG1870		842	consensus Ubiquitin C-terminal hydrolase [Posttran	99.97
cd02670		241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.97
PF13423		295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.97
KOG1864		587	consensus Ubiquitin-specific protease [Posttransla	99.97
KOG1871		420	consensus Ubiquitin-specific protease [Posttransla	99.93
KOG1872		473	consensus Ubiquitin-specific protease [Posttransla	99.92
cd03775		134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.89
cd03772		137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.88
KOG2026		442	consensus Spindle pole body protein - Sad1p [Cytos	99.84
cd03774		139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.79
cd03773		132	MATH_TRIM37 Tripartite motif containing protein 37	99.77
cd00270		149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.72
cd03780		148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.69
cd03776		147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.69
KOG1275		1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.68
cd03781		154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.67
cd03777		186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.67
cd00121		126	MATH MATH (meprin and TRAF-C homology) domain; an	99.66
cd03779		147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.66
cd03771		167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.63
cd03778		164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.59
PF00917		119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.59
smart00061		95	MATH meprin and TRAF homology.	99.53
cd03783		167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.23
cd03782		167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.19
PF15499		275	Peptidase_C98: Ubiquitin-specific peptidase-like,	98.36
KOG1987		297	consensus Speckle-type POZ protein SPOP and relate	97.87
KOG1864		587	consensus Ubiquitin-specific protease [Posttransla	96.47
KOG1870		842	consensus Ubiquitin C-terminal hydrolase [Posttran	94.03
PF08715		320	Viral_protease: Papain like viral protease; InterP	92.92
COG5560		823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	92.88
PF14533		213	USP7_C2: Ubiquitin-specific protease C-terminal; P	92.33
PF12436		249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	92.22
PF11976		72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	89.12
KOG1887		806	consensus Ubiquitin carboxyl-terminal hydrolase [P	87.78
PF11543		80	UN_NPL4: Nuclear pore localisation protein NPL4; I	87.31
KOG3556		724	consensus Familial cylindromatosis protein [Genera	86.54
PF05408		193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	86.52
cd06406		80	PB1_P67 A PB1 domain is present in p67 proteins wh	85.85
cd01768		87	RA RA (Ras-associating) ubiquitin domain. The RA (	84.22
cd01763		87	Sumo Small ubiquitin-related modifier (SUMO). Smal	83.95
smart00314		90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	82.35
PF08817		79	YukD: WXG100 protein secretion system (Wss), prote	80.62
KOG0297		391	consensus TNF receptor-associated factor [Signal t	80.12

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=7.4e-186  Score=1566.67  Aligned_cols=1024  Identities=36%  Similarity=0.600  Sum_probs=926.2

Q ss_pred             CCCccCCCCcEEEEEEcCccCcCCCccccCcEEEcceEEEEEEEeCCCCCCceEEEEEecCCCC---CCCCceEEEEEEE
Q 001246           44 NQQVEDPPTMKFTWTIENFSRLNTKKHYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADSGT---LPYGWSRYAQFSL  120 (1115)
Q Consensus        44 ~~~~~~~~~~~~tw~I~nfs~l~~~~~~Sp~F~vGG~~W~Ill~P~G~~~~~lSiyL~~~~~~~---~~~~W~~~a~f~l  120 (1115)
                      ++.+++..+..|+|+|++||.+. +++.||+|.+||+.|+|.+||+|+++..+|+||+....+.   ....|.|||||+|
T Consensus        30 ~pd~Ee~~~~sftW~vk~wsel~-~k~~Sp~F~vg~~twki~lfPqG~nq~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf  108 (1089)
T COG5077          30 DPDVEELLEMSFTWKVKRWSELA-KKVESPPFSVGGHTWKIILFPQGNNQCNVSVYLEYEPQELEETGGKYYDCCAQFAF  108 (1089)
T ss_pred             CccHHHHhhcccceecCChhhhh-hhccCCcccccCeeEEEEEecccCCccccEEEEEeccchhhhhcCcchhhhhheee
Confidence            77889999999999999999994 7899999999999999999999998766999999876531   2236999999999


Q ss_pred             EEEeecccceeeeecceeeecCCCCCcccccccCCCCCCCCCC---Cccccccceeeeeeeeecccc--cc----ccCCC
Q 001246          121 AVVNQIHSKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSR---GYLVNDSVVVEAEVAVRKVLD--YW----SYDSK  191 (1115)
Q Consensus       121 ~l~n~~~~~~~~~~~~~h~F~~~~~dwGf~~Fi~l~~L~~p~~---gfl~nD~l~I~~~V~V~~~~~--~~----~~ds~  191 (1115)
                      .|.|+..|+....++++|+|+...+||||++|+.++.|..|+.   +|++++++.|+|+|||++++.  +|    +|+||
T Consensus       109 ~Is~p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSK  188 (1089)
T COG5077         109 DISNPKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSK  188 (1089)
T ss_pred             ecCCCCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccc
Confidence            9999999998888999999999999999999999999987654   589999999999999999965  34    99999


Q ss_pred             CcccccccccCCcccchhhHHHHHhcchhHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHhcCCccccchhhhhhcCCCc
Q 001246          192 KETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDLPSGSIPLALQSLFYKLQYNDTSVATKELTKSFGWDT  271 (1115)
Q Consensus       192 ~~~g~~GL~N~GnTCY~NSvLQ~L~~~~~fr~~l~~~~~~~~~~~~~~l~~~Lq~Lf~~l~~s~~~v~~~~l~~s~~~~~  271 (1115)
                      ++||||||+|+|+||||||+||+||.+..||+.+|.+|+ ++..+..+++.+||++|++||.+..++++.+|+++|||.+
T Consensus       189 keTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~grdSValaLQr~Fynlq~~~~PvdTteltrsfgWds  267 (1089)
T COG5077         189 KETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTGEEPVDTTELTRSFGWDS  267 (1089)
T ss_pred             cceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHHHhccCCCcchHHhhhhcCccc
Confidence            999999999999999999999999999999999999999 5666778999999999999999999999999999999999


Q ss_pred             ccccccccHHHHHHHHHHHHHHhhcCCccccccccccceEEeeeEEeeceeeecceeeeeeeeEeeccCCCCHHHHHhhc
Q 001246          272 YDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKY  351 (1115)
Q Consensus       272 ~~~~~QqDa~Efl~~Lld~Le~~~~~~~~~~~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~v~~~~sL~e~L~~~  351 (1115)
                      ++.++|||+|||.++|+|.||..|+++..++.++.+|.|+|++++.|.+..++|.|.|.||+++|++++.++|+++|++|
T Consensus       268 ~dsf~QHDiqEfnrVl~DnLEksmrgt~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~y  347 (1089)
T COG5077         268 DDSFMQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRY  347 (1089)
T ss_pred             chHHHHHhHHHHHHHHHHHHHHhhcCChhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEecCCCcccccccCceeeeeeeEeecCCCeEEEEEeeEEeecccCeeeeccceeecCCcccCCcccCCCcCCCcCC
Q 001246          352 VEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDAMVKINDRYEFPLQLDLDRENGKYLSPDADR  431 (1115)
Q Consensus       352 ~~~E~l~g~n~y~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~d~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~l~~~~~~  431 (1115)
                      ++.|+|+|+|+|.|+++|.|+|+|++.|.+|||||++|||||+||+.++.++|||++++||.++||    .||++.++++
T Consensus       348 IqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl----~pfld~da~k  423 (1089)
T COG5077         348 IQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDL----LPFLDRDADK  423 (1089)
T ss_pred             hhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhcc----ccccCchhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999    9999999887


Q ss_pred             Ccc--ccEEEEEEEEeeccCCCceEEEEEecCCCCCEEEEeCceeeEechHhHHHhhcCCCCCCCCCCCCCCCCCcccCC
Q 001246          432 SVR--NLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDVKRALEEQYGGEEELPPTNPGFNNTPFKFTK  509 (1115)
Q Consensus       432 ~~~--~~Y~L~gVVvH~Gs~~~GHY~ayvr~~~~~~W~~fnD~~Vt~v~~~evl~~~fGg~~~~~~~~~~~~~~~~~~~~  509 (1115)
                      ++.  +.|.|+||+||+|+.+.|||||++|+..+|+||+|||++||+++..+|+++||||+....  .+..  ......+
T Consensus       424 sen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~--~k~r--~~~~~kR  499 (1089)
T COG5077         424 SENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYK--DKIR--DHSGIKR  499 (1089)
T ss_pred             hcccCcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCc--cccc--CCchhhh
Confidence            766  999999999999999999999999999999999999999999999999999999975321  0111  1234667


Q ss_pred             CCcEEEEEEEeecCccccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhccceeeeecCChhHHHhccccceecccC
Q 001246          510 YSNAYMLVYIRESDKDKIICNVDEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLAEQIGRDIYFDLVD  589 (1115)
Q Consensus       510 ~~~AYmLfY~R~~~~~~~l~~~~~~~ip~~l~~~~~~e~~~~~~~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~fdl~~  589 (1115)
                      ..+||||+|.|++..++++.||...+||+|+.+++.+|.++.|.+.+|++|+|+|..++++|.+.|.+|+|    ||..|
T Consensus       500 fmsAYmLvYlRks~~ddLlnPV~a~diP~hv~e~l~eei~~~e~r~kei~e~hlYr~vrl~tid~f~~yhg----FDy~D  575 (1089)
T COG5077         500 FMSAYMLVYLRKSMLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVRCKEIDEIHLYRGVRLYTIDSFIHYHG----FDYPD  575 (1089)
T ss_pred             hhhhheeeeehHhHHHhhhCchhhhhCCHHHHHhhCHHHHHHHHHHHHHHHhhhheeeEEeecchhhhccC----cCchh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999    99887


Q ss_pred             CCC------ceEEEEeccccHHHHHHHHHHHhCCCCCc-eeEEEEeecCCCcCCCCCCCCCchhhhhHHHHHhhhccccc
Q 001246          590 HDK------VRSFRVQKQTSFMAFKEEIAKEFGIPIQL-QRFWIWAKRQNHTYRPNRPLLPQEEAQTVGQLREVSNKTHT  662 (1115)
Q Consensus       590 ~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~r~w~~~~~~n~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1115)
                      +..      .+.+++++.+++.+|...||+.++.|-+. +|.|.|.+|+|.|.|.+.|+.  .-..|+.++....++.. 
T Consensus       576 fs~~~~d~~l~qf~iKr~akisdl~~~iae~ln~pqs~~~r~w~m~krhn~tvrvd~P~n--~vnit~~e~~~m~tr~g-  652 (1089)
T COG5077         576 FSSELNDSGLAQFVIKRGAKISDLRNNIAEHLNTPQSLYLREWTMIKRHNKTVRVDRPCN--RVNITTRELVGMNTRTG-  652 (1089)
T ss_pred             hhhhcccccceeEEeecCCCHHHHHHHHHHHcCCCceeeeEEEEEEeccccceeecCcch--hhhhHHHHHhhccchhH-
Confidence            764      57899999999999999999999999998 999999999999999999985  44578888876555433 


Q ss_pred             cceeeEeeeecC-CCCCC-CCCCCCCCCcEEEEEEeecCCCCeEEEEeEEEEecCCChhHHHHHHHHhcCCCCCCcEEEE
Q 001246          663 AELRLFLEVEFG-PDLHP-IAPPDKSKDDILLFFKLYDPEKGELRYVGRLFLKSSSKPIEILRKLNQMAGFDPDEEIELY  740 (1115)
Q Consensus       663 ~~~~l~le~~~~-~~~~~-~~~~~~~~~~il~FlK~fd~~~~~l~~~g~~~v~~~~~i~~l~~~i~~~~g~p~dt~l~ly  740 (1115)
                      ..+++|||.... .++.. ..........++||+||||+.+|.+.|+|++.|.+..+|+++.|.|++  .||.+++|.+|
T Consensus       653 e~l~~yle~~iEhnqL~s~~~~~lt~d~~~~ifvkyfd~~tq~i~gfg~lhvnk~~~issisp~ied--~~ssn~plt~y  730 (1089)
T COG5077         653 EELRSYLERIIEHNQLDSQRKVALTKDGVINIFVKYFDYTTQPISGFGGLHVNKFLKISSISPWIED--SISSNLPLTLY  730 (1089)
T ss_pred             HHHHHHHHhhhhhhhhhhhhheeecCCcceEEEEEeeccccccccCccchhhhhhcccccccHHHhh--cccCCCCcchh
Confidence            478889887643 11110 011123456699999999999999999999999999999999999999  89999999999


Q ss_pred             EEeecCccceeccCCccCccccccCCCCCEEEEEeCCCCCCcccCCCCCHHHHHHHHhcceEEEEEecCCC-CCCcEEEE
Q 001246          741 EEIKFEPCVMCEHLDKRTSFRLSQIEDGDIICFQKSPPLESEQECRYPDVPSFLEYVHNRQIVRFRALDRP-KEDAFCLE  819 (1115)
Q Consensus       741 EEik~~p~~~ie~i~~~~t~~~~el~~GDIl~fQ~~~~~~~~~~~~y~~v~~yy~~L~nr~~v~f~~~~~~-~~~~f~l~  819 (1115)
                      ||||  |+ |+.-|.++.||.++||+.||||||+++...+......|.++.++|+||++||.|.|+..... ....|+++
T Consensus       731 eeik--pg-mvd~i~~n~t~~~sei~tgDIi~Fe~p~a~e~Dts~~ydsa~klydfl~~rVlv~frrfsd~~~~~vfefl  807 (1089)
T COG5077         731 EEIK--PG-MVDTIGDNITFIGSEIGTGDIICFEVPGAVEFDTSSAYDSALKLYDFLQGRVLVAFRRFSDEYRENVFEFL  807 (1089)
T ss_pred             hhhc--cC-ccccccCCcceeecccCcCcEEEEeccCcccccccccchhhhHHHHhhcCcEEEEEEeeccccccceEEEe
Confidence            9998  87 55999999999999999999999998876666666779999999999999999999954322 23479999


Q ss_pred             EcCCCCHHHHHHHHHHHhCCCCCCceEEecccccCCCCCCCCccccCcchHHHhhhc-cCC-ccceEEEEEeccChhhhc
Q 001246          820 LSKQHSYDEVVERVARKIGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVH-YNQ-TSDILYYEVLDIPLPELQ  897 (1115)
Q Consensus       820 ls~~~~Y~~la~~va~~l~~~~p~~lr~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~-~~~~l~YEvL~i~l~elE  897 (1115)
                      ++....|++||..||.++++ +|.+||++++......+. .-++..+.-+|.+.|.. +.. +....+||+|++||+|||
T Consensus       808 l~~~~~Yddlcr~vs~~~hv-~p~ylr~~~~~~l~~~~r-~vv~s~s~fll~eal~ss~e~~q~p~~~yevldvpLsele  885 (1089)
T COG5077         808 LFIGDFYDDLCRNVSCKLHV-TPFYLRGTKSTELEDRIR-RVVGSKSIFLLKEALSSSSEFRQAPVDFYEVLDVPLSELE  885 (1089)
T ss_pred             eecCccHHHHHHHhccccCC-ChhHheeeeccCcccccc-eeeCCchHhHHHHHhcchhhhccCCcceeeecCccHHHHh
Confidence            99999999999999999997 599999999665444443 34555556799999965 332 346679999999999999


Q ss_pred             cCceEEEEEEcCCCCeEEEEEEEcCCCCCHHHHHHHHHhhccCCCC-CccEEEEEEeccEEEEecCCcccccccccccce
Q 001246          898 GLKNLKVAFHHATKDEVVIHNIRLPKQSTVGDVINELKTKVELSHP-NAELRLLEVFYHKIYKIFAPNEKIENINDQYWT  976 (1115)
Q Consensus       898 ~~k~~kv~w~~~~~~~~~~~~~~v~k~~tv~dll~~l~~~~~~~~~-~~~lrl~~i~~~ki~~~~~~~~~i~~i~~~~~~  976 (1115)
                      .+|.+++.|+.+++.+++.+++++.|++|+.|+|..+..|++++++ ..++|+|++.++|+.+-++..+.+..++. ..+
T Consensus       886 r~r~irl~flsngy~h~~l~ef~v~kdyt~~d~l~~v~~Kvg~tde~kk~vlv~e~~n~r~~r~hsl~tl~~d~n~-~st  964 (1089)
T COG5077         886 RKRLIRLCFLSNGYQHVYLAEFYVEKDYTAVDHLHIVVTKVGCTDELKKSVLVYEVVNLRPVRGHSLKTLIIDDNV-RST  964 (1089)
T ss_pred             cccceEEEEeecCceEEEEEEEeecccccHHHHHHHHHhhcCCcHhhhhcEEEEEEeecceecccCccceEEeccc-cce
Confidence            9999999999999999999999999999999999999999999874 57899999999999999999999999986 779


Q ss_pred             eEeeecchhhhcCCCCCeEEEEEEeeccCcccccccccCCccEEEEecCCCCHHHHHHHHHHHhCCCccccceeEEEEEe
Q 001246          977 LRAEEIPEEEKNLGPNDRLIHVYHFTKESAQNQMQVQNFGEPFFLVIHEGETLAEVKERIQRKLQVLDEEFSKWKFAFLS 1056 (1115)
Q Consensus       977 ~~~e~iP~~e~~~~~~~~li~v~hf~k~~~~~h~~~~~fG~PF~~~v~~~E~~~~~k~Rl~~rlgv~~kef~k~Kfai~~ 1056 (1115)
                      +++|.+|.++++...+++.|.|.||+|+..|.|      ||||.|+|.++|+|.++|.||++|+|.++|+|+|+|+++..
T Consensus       965 lygev~pleq~ql~t~e~~VvVqhffkdl~r~h------gi~f~f~i~p~etf~dtk~rl~arfg~~~k~Fskikl~vg~ 1038 (1089)
T COG5077         965 LYGEVFPLEQEQLTTNEMCVVVQHFFKDLIRTH------GIPFMFVIVPFETFLDTKVRLVARFGYKYKLFSKIKLFVGK 1038 (1089)
T ss_pred             eeeEecchhhhccccCCcEEEEeHHHHHHHHhc------CCceEEEeccccccchhHHHHHHHhCCCceeeeeEEEEEee
Confidence            999999999999999999999999999999988      99999999999999999999999999999999999999994


Q ss_pred             ---cC----CCccccCcccccccccccccCCCcceeEeecCCCCCCCCccccCcceE
Q 001246         1057 ---LG----RPEYLVDTDTVFNRFQRRDVYGAWEQYLGLEHSDNAPKRAYSVNQVIY 1106 (1115)
Q Consensus      1057 ---~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~lgldh~~~~~~~~~~~~~~~~ 1106 (1115)
                         .+    ++.|++||+|+++.+...+.      .| ||||++. +..++.||+|-
T Consensus      1039 s~~~g~~~~~~~~fnDedilyd~ie~l~~------il-lDhp~~~-~~~~~~Drai~ 1087 (1089)
T COG5077        1039 SYTDGELDWPMSYFNDEDILYDLIERLDY------IL-LDHPDRL-RSHSSYDRAII 1087 (1089)
T ss_pred             cccccccccccccccchhhhhhhhhccCc------ee-ecCcccc-cCcccccccee
Confidence               23    47999999999888876553      44 9999999 44477898874

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02659 peptidase_C19C A subfamily of Peptidase C19	Back alignment and domain information

>cd02668 Peptidase_C19L A subfamily of Peptidase C19	Back alignment and domain information

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length	Back alignment and domain information

>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02664 Peptidase_C19H A subfamily of Peptidase C19	Back alignment and domain information

>cd02663 Peptidase_C19G A subfamily of Peptidase C19	Back alignment and domain information

>cd02671 Peptidase_C19O A subfamily of Peptidase C19	Back alignment and domain information

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02657 Peptidase_C19A A subfamily of Peptidase C19	Back alignment and domain information

>cd02660 Peptidase_C19D A subfamily of Peptidase C19	Back alignment and domain information

>cd02667 Peptidase_C19K A subfamily of Peptidase C19	Back alignment and domain information

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A	Back alignment and domain information

>cd02661 Peptidase_C19E A subfamily of Peptidase C19	Back alignment and domain information

>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02658 Peptidase_C19B A subfamily of Peptidase C19	Back alignment and domain information

>cd02669 Peptidase_C19M A subfamily of Peptidase C19	Back alignment and domain information

>cd02662 Peptidase_C19F A subfamily of Peptidase C19	Back alignment and domain information

>cd02665 Peptidase_C19I A subfamily of Peptidase C19	Back alignment and domain information

>cd02666 Peptidase_C19J A subfamily of Peptidase C19	Back alignment and domain information

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02674 Peptidase_C19R A subfamily of peptidase C19	Back alignment and domain information

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19	Back alignment and domain information

>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases	Back alignment and domain information

>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02672 Peptidase_C19P A subfamily of Peptidase C19	Back alignment and domain information

>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02670 Peptidase_C19N A subfamily of Peptidase C19	Back alignment and domain information

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase	Back alignment and domain information

>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast	Back alignment and domain information

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway	Back alignment and domain information

>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]	Back alignment and domain information

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP	Back alignment and domain information

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins	Back alignment and domain information

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Back alignment and domain information

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2	Back alignment and domain information

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]	Back alignment and domain information

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1	Back alignment and domain information

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins	Back alignment and domain information

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces	Back alignment and domain information

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses	Back alignment and domain information

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []	Back alignment and domain information

>smart00061 MATH meprin and TRAF homology	Back alignment and domain information

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides	Back alignment and domain information

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides	Back alignment and domain information

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase	Back alignment and domain information

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein	Back alignment and domain information

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A	Back alignment and domain information

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length	Back alignment and domain information

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins	Back alignment and domain information

>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway	Back alignment and domain information

>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]	Back alignment and domain information

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis	Back alignment and domain information

>cd01768 RA RA (Ras-associating) ubiquitin domain	Back alignment and domain information

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)	Back alignment and domain information

>smart00314 RA Ras association (RalGDS/AF-6) domain	Back alignment and domain information

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []	Back alignment and domain information

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates